RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7542
(762 letters)
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif,
rossmann fold, short chain dehydrogenase/REDU family,
reductase; 2.30A {Mycobacterium tuberculosis}
Length = 478
Score = 213 bits (544), Expect = 2e-61
Identities = 68/364 (18%), Positives = 143/364 (39%), Gaps = 38/364 (10%)
Query: 39 FIVKAIPKKFKHLPDRISATLEHKNIFITGASGFVGKVLLEKILRTCE-NVKIYILLRPK 97
FI +LP E + + +TGA+GF+G+ L+ ++LR + + ++ L+R +
Sbjct: 54 FIDADTLATAVNLPGPSP---ELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAE 110
Query: 98 KNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETI 157
++++R RLE+ F S E L+ + +A +++ + GD + PDLG+ + L+ET+
Sbjct: 111 SDEDARRRLEKTFDSGDPELLRHFKELAA--DRLEVVAGDKSEPDLGLDQPMWRRLAETV 168
Query: 158 HIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEE 217
++ AA V Y + + N GT +++ ++ L+ F YVSTA
Sbjct: 169 DLIVDSAAMVNAFPYHELFG-PNVAGTAELIRIALTT-KLKPFTYVSTADVG-------- 218
Query: 218 KTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME-AGMP 276
+ P E A++ + + GY +K E ++ E + +P
Sbjct: 219 ----AAIEPSAFTEDADIRVISPTRTVDGGW----AGGYGTSKWAGEVLLREANDLCALP 270
Query: 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGA--------GKGIIRTMYCDYSTCADF 328
+ R +I + G + + T +++ + D
Sbjct: 271 VAVFRCGMI--LADTSYAGQLNMSDWVTRMVLSLMATGIAPRSFYEPDSEGNRQRAHFDG 328
Query: 329 LPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIENGKDIARNKVPLNNV 388
LPV + + + + ++ D I + ++ + P+ +
Sbjct: 329 LPVTFVAEAIAVLGARVAGSSLAGFATYHVMNPHDDGIGLDEYVD---WLIEAGYPIRRI 385
Query: 389 LWYP 392
+
Sbjct: 386 DDFA 389
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 100 bits (250), Expect = 6e-22
Identities = 99/686 (14%), Positives = 197/686 (28%), Gaps = 234/686 (34%)
Query: 128 FEKVIPINGDVAVPDLGIS-AED--RQMLS--ETIHIVYHIAATVRFDDYMQTYVFLNTR 182
++ ++ + D V + +D + +LS E HI+ + D T
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII------MSKDAVSGTLRLF--- 68
Query: 183 GTRDMLNLSKQMIHLQLFV-------Y---VSTAYCHPKEKVLEEKTY----------PP 222
L LSKQ +Q FV Y +S ++ + + Y
Sbjct: 69 ---WTL-LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 223 PVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRP 282
+ +NV + + K L+Q LL+ P V+ + G+
Sbjct: 125 VFAKYNV-SRLQPYLK-----LRQALLELRPAKN---------VLID----GVL------ 159
Query: 283 SIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLST 342
G+GK + C + + +
Sbjct: 160 --------------------------GSGKTWVAL-----DVCLSYKVQCKMDFKIF--- 185
Query: 343 WNFLSNPGNTMRVINLTANKDFQITWYDIIENGKDIARNKVPLNNVLWYPGGAMTNRGYE 402
W L N + V+ + +QI + + K+ ++++ + ++ YE
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQID-PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 403 P---VLKRVHN-RIKKGFDI------------------FEYYT-----KNSWSF-KNENL 434
VL V N + F++ T +S + +E
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 435 HALRNMMNEK-EAIRYEI------------AMFRD------------LDEAKAYFEMCIH 469
L ++ + + + E+ RD D+ E +
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL- 363
Query: 470 GARQYLLGEPPETLPGAKRHVRIMYY--------VHVITQVLLLGFFLWVLRHPGPKENC 521
L EP E R M+ H+ T +L L +W K +
Sbjct: 364 ---NVL--EPAE--------YRKMFDRLSVFPPSAHIPTILLSL---IW---FDVIKSDV 404
Query: 522 ISV----SGYRLIECEKPYYVYVIHVRMFQQHYIVEKRYSELLSWHSEGFGLGILDGKGK 577
+ V Y L+E + I + ++ + + H I+D
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIP----SIYLELKVKLENEYALHRS-----IVD---- 451
Query: 578 YAYAPPYSRTLKQNRRQKKRNCKYFIYQWLG--LNNVLWYPGGAMTNTVNLY--LYLDFG 633
Y P +T + +YF Y +G L N+ + L+ ++LDF
Sbjct: 452 -HYNIP--KTFDSDDLIPPYLDQYF-YSHIGHHLKNI------EHPERMTLFRMVFLDFR 501
Query: 634 FFQNKTKFSTPSFPPKKIRSNQPKVLDERRHLLEIYLKEMFKFGPSRNQVLAFLGVNSKN 693
F + K + + ++ S + L+ Y + P +++ +
Sbjct: 502 FLEQKIRHDSTAWNASG--SILNTLQQ-----LKFYKPYICDNDPKYERLVNAIL----- 549
Query: 694 SQPQPSISLHHYHFVFRTKTNDYRTP 719
F+ + + N +
Sbjct: 550 ------------DFLPKIEENLICSK 563
Score = 41.0 bits (95), Expect = 0.002
Identities = 91/586 (15%), Positives = 170/586 (29%), Gaps = 203/586 (34%)
Query: 45 PKKFKHLPDRISATLEHKNIFITGASGFVGK-VL-------------------------- 77
+ + L + KN+ I G G GK +
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGS-GKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 78 ------LEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKV 131
LE + + + R + N + R+ I Q+ L LK + +E
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI-QAELRRLLKSKP-----YENC 246
Query: 132 IPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLS 191
+ + +V ++ + A F+ + + T TR
Sbjct: 247 LLVLLNV---------QNAK----------AWNA---FNLSCKILL---T--TRFK---- 275
Query: 192 KQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQD 251
Q+ ++S A L+ + ++P E LL K L+ Q+L
Sbjct: 276 ------QVTDFLSAA--TTTHISLDH--HSMTLTPD---EVKSLLLKY-LDCRPQDL--- 318
Query: 252 FPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGW-------TDNINGPT 304
P + P + SII +D L W D +
Sbjct: 319 -P---------------REVLTTNPRRL---SIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 305 GLLIGAGK-GIIRTMYCDYSTCADFLPVDVLVNGVLLST-WNFLSNPGNTMRVINLTAN- 361
+ + R M+ + F P + +LLS W + + M V+N
Sbjct: 360 ESSLNVLEPAEYRKMFDR---LSVF-PPSAHIPTILLSLIWFDVI-KSDVMVVVNKLHKY 414
Query: 362 -------KDFQITWYDIIENGKDIARNKVPLNNVL--WYPGGAMTNRGYEPVLKRVHNRI 412
K+ I+ I K N+ L+ + Y + ++ + I
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN----IPKTFDS-----DDLI 465
Query: 413 KKGFD--IFEY--YTKNSWSFKNENLHALRNMMNEKEAIRYEIAMFRD--LD----EAKA 462
D + + + H L+N+ + + + +FR LD E K
Sbjct: 466 PPYLDQYFYSHIGH------------H-LKNIEHPE-----RMTLFRMVFLDFRFLEQK- 506
Query: 463 YFEMCIHGARQYLLGEPPETLPGAKRHVRIMYYVHVITQ--------VLLLGFFLWVLRH 514
+ G TL ++ +Y I V + FL
Sbjct: 507 ---IRHDSTAWNASGSILNTL------QQLKFYKPYICDNDPKYERLVNAILDFL----- 552
Query: 515 PGPKENCISVSGYRLIECEKPYYVYVIHVRMFQQH-YIVEKRYSEL 559
P +EN LI + Y ++ + + + I E+ + ++
Sbjct: 553 PKIEEN--------LICSK---YTDLLRIALMAEDEAIFEEAHKQV 587
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 83.9 bits (208), Expect = 1e-17
Identities = 38/286 (13%), Positives = 71/286 (24%), Gaps = 76/286 (26%)
Query: 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKK 120
H + GA+G +G I + ++ RP +RL +
Sbjct: 13 HVKYAVLGATGLLGHHAARAIRA--AGHDLVLIHRPSSQ---IQRLAYL----------- 56
Query: 121 EQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFD-DYMQTYVFL 179
+ ++ +R + + V A Q V
Sbjct: 57 ---------EPECRVAEMLDHA----GLERAL--RGLDGVIFSAGYYPSRPRRWQEEVAS 101
Query: 180 NTRGTRDMLNLSKQMIHLQLFVYVSTA---YCHPKEKVLEEKTYPPPVSPHNVIEKAELL 236
T Q + +YV +A HP+ E + +
Sbjct: 102 ALGQTNPFYAACLQA-RVPRILYVGSAYAMPRHPQGLPGHEGLFYDSLP----------- 149
Query: 237 SKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGW 296
+ Y K + E G+P +I P +++ G
Sbjct: 150 --------------SGKSSYVLCKWALDEQAREQARNGLPVVIGIPGMVL--------GE 187
Query: 297 TDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDV--LVNGVLL 340
D ++ G G + Y +D G+L+
Sbjct: 188 LDIGPTTGRVITAIGNGEMT-HYVAGQRNV----IDAAEAGRGLLM 228
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 64.7 bits (157), Expect = 1e-10
Identities = 64/444 (14%), Positives = 127/444 (28%), Gaps = 157/444 (35%)
Query: 401 YEPVLKRVHNRIKKGFDIFEYYTKNSWSFKNENLHAL-RNMMNEKEAIRYEIAMFRDLDE 459
++ VL + + + ++HAL ++ E + + ++L
Sbjct: 80 FDQVLNLCLTEFENCY------------LEGNDIHALAAKLLQENDT---TLVKTKEL-- 122
Query: 460 AKAYFEMCIHGARQYLLGEPPETLPGAKR-HVRIMYYVHVITQVLLLG-------FF--- 508
K Y I R + + +++ + G +F
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV---------AIFGGQGNTDDYFEEL 173
Query: 509 --LWVLRHPGPKENCISVSGYRLIECEKPYYVYVIHVRMFQQHYIVEKRYSE---LLSWH 563
L+ + + I S L E + EK +++ +L W
Sbjct: 174 RDLYQ-TYHVLVGDLIKFSAETLSELIR-------------TTLDAEKVFTQGLNILEW- 218
Query: 564 SEGFGLGILDGKGK-----Y-AYAP---PYSRTLKQNRRQKKRNCKYFIY-QWLGLNNVL 613
L+ Y P P + Q Y + + LG
Sbjct: 219 --------LENPSNTPDKDYLLSIPISCPLI-GVIQL-------AHYVVTAKLLGFT--- 259
Query: 614 WYPG-------G--------------AMTNT-----VNLYLYLDFGFF-----QNKTKFS 642
PG G A T++ V++ + FF +
Sbjct: 260 --PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA--YP 315
Query: 643 TPSFPPKKIRSN------QP----KVLDERRHLLEIYLKEMFKFGPSRNQVLAFLGVNSK 692
S PP + + P + + + ++ Y+ + P+ QV L VN
Sbjct: 316 NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL-VNG- 373
Query: 693 NSQPQ------PSISLHHYHFVFR-----TKTNDYRTPVDSSRPKRIEH--LPVF----- 734
+ P SL+ + R + + R P S R + + LPV
Sbjct: 374 ---AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP-FSERKLKFSNRFLPVASPFHS 429
Query: 735 -IVNPNIDTLSQEYGTHDVIVNGA 757
++ P D ++++ ++V N
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAK 453
Score = 46.2 bits (109), Expect = 5e-05
Identities = 98/510 (19%), Positives = 162/510 (31%), Gaps = 163/510 (31%)
Query: 10 DIPSHLEHLPDRIASSLKDKHIFMTGASGFIVKAI-PKKFKHLPDRISATLEH-KNIFIT 67
D P+ L + F+ G++ + P K ++ L +N ++
Sbjct: 52 DEPTTPAELVGK----------FL----GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE 97
Query: 68 GAS--GFVGKVLLE---KILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQ 122
G K+L E +++T E +K YI R + ++ S L+ A+ +
Sbjct: 98 GNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN----SALFRAVGEGN 153
Query: 123 SES-AIFEKVIPING------------------DVAVPDLGISAEDRQMLSETIHIVYHI 163
++ AIF G V V DL + + LSE I +
Sbjct: 154 AQLVAIF------GGQGNTDDYFEELRDLYQTYHVLVGDLIKFS--AETLSELIRT--TL 203
Query: 164 AATVRFDDYMQTYVFLNTRGTR---DMLN---LSKQMIHL-QLFVYVSTAY---CHPKEK 213
A F + +L D L +S +I + QL YV TA P E
Sbjct: 204 DAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGEL 263
Query: 214 VLEEKTYPPPVSPHN-------VIEKA---ELLSKNELELLKQELL--------QDFPNG 255
K + H+ I + E + + + +L + +PN
Sbjct: 264 RSYLKG----ATGHSQGLVTAVAIAETDSWESFFVSVRKAI--TVLFFIGVRCYEAYPN- 316
Query: 256 YAYTKCLCEGVVTEYMEA--GMPC-M-----ILRPSIIIPIWK--DPLPGWTD----NIN 301
L ++ + +E G+P M + + + + K LP +N
Sbjct: 317 ----TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN 372
Query: 302 GP-----TGL---LIG-----------AGKGIIRTMYCD----YSTCADFLPVDVLVNGV 338
G +G L G +G R + + +S FLPV +
Sbjct: 373 GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR--FLPVASPFHSH 430
Query: 339 LLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIENGKD-------IARNKVPL---NNV 388
LL + L N ++ A KD QI YD +G D I+ V V
Sbjct: 431 LLVPASDLINKDLVKNNVSFNA-KDIQIPVYD-TFDGSDLRVLSGSISERIVDCIIRLPV 488
Query: 389 LWY--------------PG-----GAMTNR 399
W PG G +T+R
Sbjct: 489 KWETTTQFKATHILDFGPGGASGLGVLTHR 518
Score = 45.0 bits (106), Expect = 1e-04
Identities = 102/649 (15%), Positives = 188/649 (28%), Gaps = 226/649 (34%)
Query: 58 TLEHKNI----FITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSP 113
TL H ++ + AS F+ L E+ + L P + + ++ +P
Sbjct: 10 TLSHGSLEHVLLVPTASFFIASQLQEQFNKI--------LPEPTEGFAA----DDEPTTP 57
Query: 114 L--------YEALKKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSET-IH-IVYHI 163
Y + E S+ F++V+ +L ++ + L IH + +
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVL---------NLCLTEFENCYLEGNDIHALAAKL 108
Query: 164 -----AATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLF---------VYV------ 203
V+ + ++ Y+ R S LF +
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS----ALFRAVGEGNAQLVAIFGGQG 164
Query: 204 -STAYCHPKEKVLEE-----KTYPPPVSPHNVIEK-AELLSKNELELLKQELLQD--FPN 254
+ Y EE +TY V +I+ AE LS EL++ L + F
Sbjct: 165 NTDDY-------FEELRDLYQTYHVLVGD--LIKFSAETLS----ELIRTTLDAEKVFTQ 211
Query: 255 GYAYTKCLCEGVVT---EYMEAGMPCMILRPSIIIPI-WKDPLPGWTDNIN-GPTGLLIG 309
G + L T +Y+ + IPI PL G + T L+G
Sbjct: 212 GLNILEWLENPSNTPDKDYL------------LSIPISC--PLIGVIQLAHYVVTAKLLG 257
Query: 310 AGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTW-NFLSNPGNTMRV---INLTANKDFQ 365
G +R+ + + L V + +W +F + + V I + + +
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAET--DSWESFFVSVRKAITVLFFIGVRCYEAYP 315
Query: 366 ITWY------DIIENGKDIARNKVPLNNVLWYPGGAMTNRGYEPVLKRVHNRIKKGFDIF 419
T D +EN + + P+ ++ ++V + + K
Sbjct: 316 NTSLPPSILEDSLENNEGVPS---PMLSI----------SNLT--QEQVQDYVNK----- 355
Query: 420 EYYTKNSWSFKNENLH-ALRNMMNEKEAIRYEIAMFRDLDEAKAYFEMCIHGARQYLLGE 478
NS + + +L N GA+ ++
Sbjct: 356 ----TNSHLPAGKQVEISLVN------------------------------GAKNLVVSG 381
Query: 479 PPETLPGAKRHVRIMYYVHVITQVLLLGFFLWVLRHPGPKENCISVSGYRLIECEKPYYV 538
PP++L G +R + Q R P + K
Sbjct: 382 PPQSLYGLNLTLRKAKAPSGLDQS----------RIPFSE--------------RKL--- 414
Query: 539 YVIHVRM------FQQHY-------IVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYS 585
R F H I + +S++++ + I P Y
Sbjct: 415 -KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK--DIQI----------PVYD 461
Query: 586 RTLK-QNRRQKKRNCKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFG 633
T + R + I + V W T ++ LDFG
Sbjct: 462 -TFDGSDLRVLSGSISERIVDCIIRLPVKW---ETTTQFKATHI-LDFG 505
Score = 30.8 bits (69), Expect = 2.1
Identities = 31/175 (17%), Positives = 53/175 (30%), Gaps = 59/175 (33%)
Query: 111 QSP-----LYEALKKEQSESA--IFEKVIPINGDVAVPD-LGISAEDRQMLSETIHIVYH 162
Q LY+ S++A ++ + D D G S + IV +
Sbjct: 1627 QEQGMGMDLYKT-----SKAAQDVWNR-----ADNHFKDTYGFS---------ILDIVIN 1667
Query: 163 --IAATVRFDDYM-----QTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYC--HPKEK 213
+ T+ F + Y + D ++++ + ST+Y K
Sbjct: 1668 NPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKI--FKEINEHSTSYTFRSEKG- 1724
Query: 214 VLE--EKTYPPPVSPHNVIEKAELL-SKNELELLKQELLQDFPNGYA------YT 259
+L + T P A L K E LK + L +A Y
Sbjct: 1725 LLSATQFTQP-----------ALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYA 1768
Score = 30.8 bits (69), Expect = 2.6
Identities = 26/105 (24%), Positives = 32/105 (30%), Gaps = 36/105 (34%)
Query: 403 PVLKRVHNRIKKGFDIFEYYTKNSWS------------FKNENLHALRNMMN-EKEAIRY 449
PV +H +KG I E Y+ + FK N H+ EK +
Sbjct: 1669 PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA 1728
Query: 450 -----------EIAMFRDLDE-----AKAYFEMCIHGARQYLLGE 478
E A F DL A A F H LGE
Sbjct: 1729 TQFTQPALTLMEKAAFEDLKSKGLIPADATF--AGHS-----LGE 1766
>2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607,
structural genomics,protein structure initiative PSI;
NMR {Homo sapiens}
Length = 128
Score = 55.6 bits (134), Expect = 1e-09
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 629 YLDFGFFQN--KTKFSTPSFPPKKIRSNQPKVLDERRHLLEIYLKEMFKFGPSRN-QVLA 685
Y +F K + P FP K++ + + + L++RR LE Y++ + ++L
Sbjct: 52 YSEFHALHKRIKKLYKVPDFPSKRLPNWRTRGLEQRRQGLEAYIQGILYLNQEVPKELLE 111
Query: 686 FLGVNSKNSQP 696
FL + + P
Sbjct: 112 FLRLRHFPTDP 122
Score = 41.4 bits (97), Expect = 1e-04
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 533 EKPYYVYVIHVRMFQQHYIVEKRYSELLSWHSE 565
EK + V+ + V + + V +RYSE + H
Sbjct: 29 EKSHMVFRVEVLCSGRRHTVPRRYSEFHALHKR 61
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 56.6 bits (137), Expect = 6e-09
Identities = 32/243 (13%), Positives = 68/243 (27%), Gaps = 71/243 (29%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKE 121
K + +TGA+G +G+V+ E++ E +++ L P E
Sbjct: 4 KRLLVTGAAGQLGRVMRERLAPMAEILRL-ADLSPLDPAGPNEEC--------------- 47
Query: 122 QSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNT 181
+ D+A + + + H+ + + + + N
Sbjct: 48 ------------VQCDLADANAVNAM------VAGCDGIVHLGG-ISVEKPFEQILQGNI 88
Query: 182 RGTRDMLNLSKQMIHLQLFVYVST--AY-CHPKEKVLEEKTYPPPVSPHNVIEKAELLSK 238
G ++ ++ V+ S+ +P+ + L P
Sbjct: 89 IGLYNLYEAARAH-GQPRIVFASSNHTIGYYPQTERLGPDVPARPDGL------------ 135
Query: 239 NELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDP--LPG 295
Y +KC E + Y + G ++R P + L
Sbjct: 136 -----------------YGVSKCFGENLARMYFDKFGQETALVRIGSCTPEPNNYRMLST 178
Query: 296 WTD 298
W
Sbjct: 179 WFS 181
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 53.5 bits (129), Expect = 8e-08
Identities = 33/244 (13%), Positives = 69/244 (28%), Gaps = 77/244 (31%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKE 121
+ +TGA+G VG + + V++ ++ E EEI
Sbjct: 3 NRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGA----AEAHEEI------------ 46
Query: 122 QSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVR---FDDYMQTYVF 178
+ D+A + + H+ ++D +Q
Sbjct: 47 ------------VACDLADAQAVHDL------VKDCDGIIHLGGVSVERPWNDILQA--- 85
Query: 179 LNTRGTRDMLNLSKQMIHLQLFVYVSTA---YCHPKEKVLEEKTYPPPVSPHNVIEKAEL 235
N G ++ ++ + V+ S+ +P+ ++ + P S
Sbjct: 86 -NIIGAYNLYEAARNL-GKPRIVFASSNHTIGYYPRTTRIDTEVPRRPDSL--------- 134
Query: 236 LSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDP-- 292
Y +KC E + + Y + + +R P KD
Sbjct: 135 --------------------YGLSKCFGEDLASLYYHKFDIETLNIRIGSCFPKPKDARM 174
Query: 293 LPGW 296
+ W
Sbjct: 175 MATW 178
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 51.9 bits (125), Expect = 3e-07
Identities = 47/310 (15%), Positives = 85/310 (27%), Gaps = 86/310 (27%)
Query: 64 IFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQS 123
I +TG+SG +G L+ + + I + +
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNV-IASDIVQRDTGGIKF----------------- 43
Query: 124 ESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATV------RFDDYMQTYV 177
I DV+ D A + +I ++H+A + +
Sbjct: 44 ----------ITLDVSNRDEIDRA----VEKYSIDAIFHLAGILSAKGEKDPALAYKV-- 87
Query: 178 FLNTRGTRDMLNLSKQMIHLQLFVYVSTA---YCHPKEKVLEEKTYPPPVSPHNVIEKAE 234
N GT ++L +KQ ++ V ST + + T P +
Sbjct: 88 --NMNGTYNILEAAKQH-RVEKVVIPSTIGVFGPETPKNKVPSITITRPRTM-------- 136
Query: 235 LLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDPL 293
+ TK E + Y E G+ LR II +P
Sbjct: 137 ---------------------FGVTKIAAELLGQYYYEKFGLDVRSLRYPGIISYKAEPT 175
Query: 294 PGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTM 353
G TD + A K Y + + + + ++ + +
Sbjct: 176 AGTTDYA---VEIFYYAVKREKYKCYLAPNRALPMMYMPDALKALVD----LYEADRDKL 228
Query: 354 ---RVINLTA 360
N+TA
Sbjct: 229 VLRNGYNVTA 238
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium
tumefa structural genomics, PSI-2, protein structure
initiative; 1.85A {Agrobacterium tumefaciens}
Length = 342
Score = 51.6 bits (124), Expect = 4e-07
Identities = 45/325 (13%), Positives = 100/325 (30%), Gaps = 75/325 (23%)
Query: 50 HLPDRISATLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEI 109
H R + + +I I GA+G VG+ L ++++ K + +E+
Sbjct: 3 HSSGRENLYFQGMHIAIIGAAGMVGRKLTQRLV--------------KDGSLGGKPVEKF 48
Query: 110 FQSPLYEALKKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATV-- 167
+++ V D++ P +++ +++H+AA V
Sbjct: 49 TLIDVFQPEAPA----GFSGAVDARAADLSAPGE-----AEKLVEARPDVIFHLAAIVSG 99
Query: 168 ----RFDDYMQTYVFLNTRGTRDMLNLSKQ----MIHLQLFVYVSTA--YCHPKEKVLEE 217
FD + +N GTR + + + + V+ S+ + P + +
Sbjct: 100 EAELDFDKGYR----INLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPLPYPIPD 155
Query: 218 KTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMP 276
+ + P++ Y K +CE ++++Y
Sbjct: 156 EFHTTPLTS-----------------------------YGTQKAICELLLSDYSRRGFFD 186
Query: 277 CMILR-PSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLV 335
+ +R P+I I P + + +L G + S V
Sbjct: 187 GIGIRLPTICIRP-GKPNAAASGFFS---NILREPLVGQEAVLPVPESIRHWHASPRSAV 242
Query: 336 NGVLLSTWNFLSNPGNTMRVINLTA 360
L+ R +++
Sbjct: 243 GF-LIHGAMIDVEKVGPRRNLSMPG 266
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD
binding, isomerase; HET: NAD; 2.55A {Helicobacter
pylori}
Length = 362
Score = 49.6 bits (119), Expect = 2e-06
Identities = 39/238 (16%), Positives = 71/238 (29%), Gaps = 67/238 (28%)
Query: 55 ISATLEHKNIFITGASGFVGKVLLEKILRTCENVKIYI---LLRPKKNKNSRERLEEIFQ 111
I LE++ I ITG +GFVG L K+ + N+R
Sbjct: 4 IDDELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPS------ 57
Query: 112 SPLYEALKKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAA--TVRF 169
F+ +I G+V D+ + R++ ++H AA
Sbjct: 58 ------------SLGHFKNLIGFKGEVIAADINNPLDLRRLEKLHFDYLFHQAAVSDTTM 105
Query: 170 DD---YMQTYVFLNTRGTRDMLNLSKQM-IHLQLFVYVSTA--YCHPKEKVLEEKTYPPP 223
+ M+T N + ++L +++ +Y S+A Y + K P
Sbjct: 106 LNQELVMKT----NYQAFLNLLEIARSKKAK---VIYASSAGVYGNTKAPN-VVGKNESP 157
Query: 224 VSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILR 281
+ Y ++K + V + + LR
Sbjct: 158 ENV-----------------------------YGFSKLCMDEFVLSHS-NDNVQVGLR 185
>1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo
sapiens} SCOP: d.189.1.1
Length = 143
Score = 45.4 bits (107), Expect = 8e-06
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 644 PSFPPKKIRSNQPKVLDERRHLLEIYLKEMFKFGP--SRNQ-VLAFLGVNSKNSQPQP 698
P+ P K + ++ + R L Y+K + ++ V F + +S+ P
Sbjct: 86 PTLPAKVYVGVKQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQSPYDSEQVP 143
Score = 36.1 bits (83), Expect = 0.013
Identities = 8/45 (17%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 522 ISVSGYRLIECEKPYYVYVIHVRMF-QQHYIVEKRYSELLSWHSE 565
+++ ++V+VI V+ Y++ +RY + + S+
Sbjct: 23 ANIADIEEKRGFTSHFVFVIEVKTKGGSKYLIYRRYRQFHALQSK 67
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 46.8 bits (112), Expect = 1e-05
Identities = 41/228 (17%), Positives = 61/228 (26%), Gaps = 75/228 (32%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKE 121
I +TG +GF+G+ ++E I I K N YE
Sbjct: 3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKAIN------------DYEY---- 46
Query: 122 QSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFD---DYMQTYVF 178
D + DL D + V H+AAT
Sbjct: 47 ------------RVSDYTLEDLINQLND-------VDAVVHLAATRGSQGKISEFHD--- 84
Query: 179 LNTRGTRDMLNLSKQMIHLQLFVYVSTA--YCHPKEKVLEEKTYPPPVSPHNVIEKAELL 236
N T+++ + + ++ VY ST Y EK P P
Sbjct: 85 -NEILTQNLYDACYEN-NISNIVYASTISAYSDETSLPWNEKELPLPDLM---------- 132
Query: 237 SKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPS 283
Y +K CE + Y G+ LR +
Sbjct: 133 -------------------YGVSKLACEHIGNIYSRKKGLCIKNLRFA 161
>3p0c_A Nischarin; structural genomics, structural genomics consortium,
SGC, PX signaling protein; 2.27A {Homo sapiens}
Length = 130
Score = 44.5 bits (105), Expect = 1e-05
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Query: 629 YLDFGFFQNK----TKFSTPSFPPKKIRSN-QPKVLDERRHLLEIYLKEMFKFGPSRN-- 681
Y DF K K PPKKI ++++R LE+YL+++ P
Sbjct: 56 YSDFHDLHEKLVAERKIDKNLLPPKKIIGKNSRSLVEKREKDLEVYLQKLLAAFPGVTPR 115
Query: 682 QVLAFLGVNS 691
+ FL +
Sbjct: 116 VLAHFLHFHF 125
Score = 37.9 bits (88), Expect = 0.003
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 531 ECEKPYYVYVIHVRMFQQHYIVEKRYSELLSWHS 564
E Y VY+I V + V+ RYS+ H
Sbjct: 31 ELVDTYTVYIIQVTDGSHEWTVKHRYSDFHDLHE 64
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NADH complex, sugar binding protein; HET: NAI;
1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A*
2q1u_A*
Length = 377
Score = 46.9 bits (112), Expect = 1e-05
Identities = 37/246 (15%), Positives = 72/246 (29%), Gaps = 66/246 (26%)
Query: 49 KHLPDRISAT-LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLE 107
H+P ++A+ L + N+ + G +GFVG L++++L N +++++ +
Sbjct: 19 SHMPVIMNASKLANTNVMVVGGAGFVGSNLVKRLLELGVN-QVHVV-----DNLLSAEKI 72
Query: 108 EIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIH---IVYHIA 164
+ P F + D +L+ V+H+A
Sbjct: 73 NVPDHPAVR-----------F-----SETSIT---------DDALLASLQDEYDYVFHLA 107
Query: 165 ATVRFDDYMQ---TYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTA--YCHPKEKVLEEKT 219
+ NT T + K L+ VY + +
Sbjct: 108 TYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATE 167
Query: 220 YPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNG-YAYTKCLCEGVVTEYMEA-GMPC 277
VS HN + Y+ +K E Y + +P
Sbjct: 168 ETDIVSLHN------------------------NDSPYSMSKIFGEFYSVYYHKQHQLPT 203
Query: 278 MILRPS 283
+ R
Sbjct: 204 VRARFQ 209
>2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing
alpha polypeptide; PI3K, PX domain, transferase; 2.6A
{Homo sapiens}
Length = 140
Score = 43.0 bits (101), Expect = 4e-05
Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 10/79 (12%)
Query: 629 YLDFGFFQNKTK-----FSTPSFPPKKI--RSNQPKVLDERRHLLEIYLKEMFKFGP--S 679
+ +F NK + P FP + + R++ V +R+ L YL+ + +
Sbjct: 59 FDEFQELHNKLSIIFPLWKLPGFPNRMVLGRTHIKDVAAKRKIELNSYLQSLMNASTDVA 118
Query: 680 RNQ-VLAFLGVNSKNSQPQ 697
V F ++ + +
Sbjct: 119 ECDLVCTFFHPLLRDEKAE 137
Score = 35.7 bits (82), Expect = 0.018
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 522 ISVSGYRLIECEKPYYVYVIHVRMFQQ--HYIVEKRYSELLSWHS 564
+SV Y +Y+YV+ + Q V + + E H+
Sbjct: 23 VSVFTYHKKYNPDKHYIYVVRILREGQIEPSFVFRTFDEFQELHN 67
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate
metabolism, stress response; HET: NAP ADP BMA; 2.36A
{Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 45.4 bits (108), Expect = 5e-05
Identities = 35/236 (14%), Positives = 72/236 (30%), Gaps = 73/236 (30%)
Query: 56 SATLEHKNIFITGASGFVGKVLLEKILRTCENVKIYI---LLRPKKNKNSRERLEEIFQS 112
+ +E + I +TG +GF+G +++ + I + L K N + +
Sbjct: 41 GSGIEGRMIIVTGGAGFIGSNIVKALNDKGIT-DILVVDNLKDGTKFVNLVDLNIADY-- 97
Query: 113 PLYEALKKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAA----TVR 168
+ KE I + + ++H A T
Sbjct: 98 -----MDKEDFLIQIMAGEEFGDVEA---------------------IFHEGACSSTTEW 131
Query: 169 FDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTA--YCHPKEKVLEEKTYPPPVSP 226
YM N + ++++L+ + F+Y S+A Y +E + Y P++
Sbjct: 132 DGKYMMDN---NYQYSKELLHYCLE--REIPFLYASSAATYGGRTSDFIESREYEKPLNV 186
Query: 227 HNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME-AGMPCMILR 281
+ Y+K L + V + + A + R
Sbjct: 187 -----------------------------FGYSKFLFDEYVRQILPEANSQIVGFR 213
>2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex,
transport protein, phosphatidylinositol 3-phosphate
binding, nucleotide-binding; 2.20A {Homo sapiens}
Length = 134
Score = 42.9 bits (101), Expect = 5e-05
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 629 YLDFGFFQNKTK-----FSTPSFPPKK-IRSNQPKVLDERRHLLEIYLKEMF 674
Y F K + FPPKK + +V+ ERR LE YL++ F
Sbjct: 43 YSRFREMHKTLKLKYAELAALEFPPKKLFGNKDERVIAERRSHLEKYLRDFF 94
Score = 41.7 bits (98), Expect = 1e-04
Identities = 9/44 (20%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 522 ISVSGYRLI-ECEKPYYVYVIHVRMFQQHYIVEKRYSELLSWHS 564
IS+ Y L + + ++ + + + + + + V +RYS H
Sbjct: 8 ISIPRYVLCGQGKDAHFEFEVKITVLDETWTVFRRYSRFREMHK 51
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 43.5 bits (103), Expect = 9e-05
Identities = 34/190 (17%), Positives = 60/190 (31%), Gaps = 46/190 (24%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLR-PKKNKNSRERLEEIFQSPLYEALKK 120
K I + GASGFVG LL + L V ++R P+K K E L+
Sbjct: 5 KKIVLIGASGFVGSALLNEALNRGFEVT--AVVRHPEKIKIENEHLK------------- 49
Query: 121 EQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLN 180
DV+ D + V + +
Sbjct: 50 ------------VKKADVSSLDEVCEV------CKGADAVISAFNPGWNNPDIYD---ET 88
Query: 181 TRGTRDMLNLSKQMIHLQLFVYVSTA---YCHPKEKVLEEKTYPPPVSPHNVIEKAELLS 237
+ +++ K+ + F+ V A + P ++++ P + P + L
Sbjct: 89 IKVYLTIIDGVKKA-GVNRFLMVGGAGSLFIAPGLRLMDSGEVPENILPG-----VKALG 142
Query: 238 KNELELLKQE 247
+ L L +E
Sbjct: 143 EFYLNFLMKE 152
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 43.8 bits (104), Expect = 1e-04
Identities = 60/319 (18%), Positives = 101/319 (31%), Gaps = 86/319 (26%)
Query: 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNS--RERLEEIFQSPLY 115
+ K ITG +GF+G LLE +L+ + K+ L N + + L+E+
Sbjct: 24 PAQPKVWLITGVAGFIGSNLLETLLK--LDQKVVGL----DNFATGHQRNLDEV------ 71
Query: 116 EALKKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIH---IVYHIAATVRFDDY 172
+ + I GD+ + + V H AA
Sbjct: 72 ----RSLVSEKQWSNFKFIQGDIR---------NLDDCNNACAGVDYVLHQAALGSVPRS 118
Query: 173 MQ---TYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTA--YCHPKEKVLEEKTYPPPVSPH 227
+ T N G +ML ++ +Q F Y +++ Y E T P+SP
Sbjct: 119 INDPITSNATNIDGFLNMLIAARDA-KVQSFTYAASSSTYGDHPGLPKVEDTIGKPLSP- 176
Query: 228 NVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIII 286
YA TK + E + G + LR +
Sbjct: 177 ----------------------------YAVTKYVNELYADVFSRCYGFSTIGLRYFNVF 208
Query: 287 PIWKDP-------LPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVL 339
+DP +P WT ++ G + + D T DF ++ V L
Sbjct: 209 GRRQDPNGAYAAVIPKWTSSMI--------QGDDV--YINGDGETSRDFCYIENTVQANL 258
Query: 340 LSTWNFLSNPGNTMRVINL 358
L+ + +V N+
Sbjct: 259 LAA---TAGLDARNQVYNI 274
>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P
transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A
Length = 115
Score = 41.2 bits (97), Expect = 1e-04
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 629 YLDFGFFQN--KTKFST---PSFPPKKIRSNQPKVLDERRHLLEIYLKEMFK 675
Y + ++ P+FPPKK+ S P +++RR LE Y++ + +
Sbjct: 40 YSQLLGLHEQLRKEYGANVLPAFPPKKLFSLTPAEVEQRREQLEKYMQAVRQ 91
Score = 34.3 bits (79), Expect = 0.028
Identities = 12/46 (26%), Positives = 15/46 (32%), Gaps = 6/46 (13%)
Query: 522 ISVSGYRLIECE---KPYYVYVIHVRMFQQHYIVEKRYSELLSWHS 564
S+ + Y Y IHV RYS+LL H
Sbjct: 6 FSIPETESRSGDSGGSAYVAYNIHVNGV---LHCRVRYSQLLGLHE 48
>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase;
1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A
Length = 154
Score = 41.5 bits (97), Expect = 2e-04
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 629 YLDFGFFQN--KTKFS--TPSFPPKKIRSN--QPKVLDERRHLLEIYLKEMFKFGPSRN- 681
Y +F N K +F P K+I + P + +RR L +++ + ++ N
Sbjct: 45 YAEFDKLYNSLKKQFPAMALKIPAKRIFGDNFDPDFIKQRRAGLNEFIQNLVRYPELYNH 104
Query: 682 -QVLAFLGVNSKNSQPQPS 699
V AFL ++S Q PS
Sbjct: 105 PDVRAFLQMDSPRHQSDPS 123
Score = 36.1 bits (83), Expect = 0.015
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 517 PKENCISVS---GYRLIECEKPYYVYVIHVRMFQQHYIVEKRYSE 558
KE+C SVS E +K + VY + V + + + V +RY+E
Sbjct: 3 YKESCPSVSIPSSDEHREKKKRFTVYKVLVSVGRSEWFVFRRYAE 47
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia
pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*
Length = 357
Score = 42.9 bits (101), Expect = 3e-04
Identities = 39/213 (18%), Positives = 73/213 (34%), Gaps = 53/213 (24%)
Query: 62 KNIFITGASGFVG----KVLLEKILRTCENVKIY-ILLRPKKNKNSRERLEEIFQSPLYE 116
K +F+TG +GF G L + L + L+E
Sbjct: 10 KRVFVTGHTGFKGGWLSLWLQTM------GATVKGYSLTAPTVPS------------LFE 51
Query: 117 ALKKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIH-----IVYHIAA--TVR- 168
+ + GD+ D+ L E+I IV+H+AA VR
Sbjct: 52 TARVAD-------GMQSEIGDI---------RDQNKLLESIREFQPEIVFHMAAQPLVRL 95
Query: 169 -FDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPH 227
+ + ++TY N GT +L + + ++ V +++ C+ ++ + + +
Sbjct: 96 SYSEPVETYST-NVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENEAMGGY 154
Query: 228 NVIEKAELLSKNELELLKQELLQDFPNGYAYTK 260
+ SK EL+ F N Y +
Sbjct: 155 DPYS----NSKGCAELVTSSYRNSFFNPANYGQ 183
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, melioidosis,
glanders; 2.10A {Burkholderia pseudomallei}
Length = 372
Score = 42.1 bits (99), Expect = 4e-04
Identities = 18/146 (12%), Positives = 49/146 (33%), Gaps = 33/146 (22%)
Query: 52 PDRISATLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQ 111
+ +++ K + I G +GF+G L ++IL T + ++ + +RL ++ +
Sbjct: 15 QTQGPGSMKAKKVLILGVNGFIGHHLSKRILETTDWE-VFGM------DMQTDRLGDLVK 67
Query: 112 SPLYEALKKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDD 171
GD+ + E + + ++ + A
Sbjct: 68 HERMHF----------------FEGDITINK-----EWVEYHVKKCDVILPLVAIATPAT 106
Query: 172 YM----QTYVFLNTRGTRDMLNLSKQ 193
Y+ + L+ ++ + +
Sbjct: 107 YVKQPLRV-FELDFEANLPIVRSAVK 131
>1xq6_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT5G02240, NADP, center for eukaryotic structural
genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Length = 253
Score = 41.0 bits (96), Expect = 8e-04
Identities = 35/257 (13%), Positives = 75/257 (29%), Gaps = 61/257 (23%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKE 121
+ +TGASG G+++ +K+ + L+R + K ++F + +
Sbjct: 5 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIG---DITDAD 61
Query: 122 QSESAI--FEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFL 179
A + ++ + V G + D+
Sbjct: 62 SINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQV----DW------- 110
Query: 180 NTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELL-SK 238
G ++ ++ +K ++ V V + P P N + +L K
Sbjct: 111 --IGQKNQIDAAKVA-GVKHIVVVGSMGGT------------NPDHPLNKLGNGNILVWK 155
Query: 239 NELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTD 298
+ E + L D +G P I+R ++ D G +
Sbjct: 156 RKAE----QYLAD---------------------SGTPYTIIRAGGLL----DKEGGVRE 186
Query: 299 NINGPTGLLIGAGKGII 315
+ G L+ +
Sbjct: 187 LLVGKDDELLQTDTKTV 203
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 41.5 bits (98), Expect = 8e-04
Identities = 63/325 (19%), Positives = 105/325 (32%), Gaps = 100/325 (30%)
Query: 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNS--RERLEEIFQSPLYE 116
K ITG +GF+G LLEK+L+ N + L N ++ + L+E+
Sbjct: 23 FSPKTWLITGVAGFIGSNLLEKLLK--LNQVVIGL----DNFSTGHQYNLDEV------- 69
Query: 117 ALKKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAA--TVRF----- 169
K + + + I GD+ + + + + V H AA +V
Sbjct: 70 ---KTLVSTEQWSRFCFIEGDIR------DLTTCEQVMKGVDHVLHQAALGSVPRSIVDP 120
Query: 170 DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTA--YCHPKEKVLEEKTYPPPVSPH 227
T N G ++L+ +K +Q F Y +++ Y E+ P+SP
Sbjct: 121 ITTNAT----NITGFLNILHAAKNA-QVQSFTYAASSSTYGDHPALPKVEENIGNPLSP- 174
Query: 228 NVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILR----- 281
YA TK + E Y G + LR
Sbjct: 175 ----------------------------YAVTKYVNEIYAQVYARTYGFKTIGLRYFNVF 206
Query: 282 -PSIIIPIWKDP-------LPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDV 333
+DP +P WT + G + + D T DF +D
Sbjct: 207 GR------RQDPNGAYAAVIPKWTAAML--------KGDDV--YINGDGETSRDFCYIDN 250
Query: 334 LVNGVLLSTWNFLSNPGNTMRVINL 358
++ +LS S + N+
Sbjct: 251 VIQMNILSALAKDSAKD---NIYNV 272
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.2.1.2
Length = 215
Score = 40.4 bits (95), Expect = 0.001
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSR 103
K + + GA+G G+ LL++IL K+ R ++ R
Sbjct: 6 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPR 47
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription;
HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB:
2fmu_A
Length = 242
Score = 40.2 bits (94), Expect = 0.001
Identities = 27/145 (18%), Positives = 50/145 (34%), Gaps = 30/145 (20%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKE 121
K++FI GASG G+VLL++IL K+ ++ R +K
Sbjct: 19 KSVFILGASGETGRVLLKEILEQGLFSKVTLIGR-----------------------RKL 55
Query: 122 QSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNT 181
+ ++ V D D D + + + T R + +V ++
Sbjct: 56 TFDEEAYKNVNQEVVDFEKLD------DYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDR 109
Query: 182 RGTRDMLNLSKQMIHLQLFVYVSTA 206
L+K + F +S+
Sbjct: 110 DYVLKSAELAKAG-GCKHFNLLSSK 133
>2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo
sapiens} PDB: 2rea_A 2red_A
Length = 121
Score = 38.3 bits (89), Expect = 0.001
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 10/77 (12%)
Query: 629 YLDFGFFQNKTK-----FSTPSFPPKKI--RSNQPKVLDERRHLLEIYLKEMFKFGP--S 679
+ +F NK + P FP + + R++ V +R+ L YL+ + +
Sbjct: 44 FDEFQELHNKLSIIFPLWKLPGFPNRMVLGRTHIKDVAAKRKIELNSYLQSLMNASTDVA 103
Query: 680 RNQ-VLAFLGVNSKNSQ 695
V F + +
Sbjct: 104 ECDLVCTFFHGSHHHHH 120
Score = 34.5 bits (79), Expect = 0.031
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 522 ISVSGYRLIECEKPYYVYVIHVRMF--QQHYIVEKRYSELLSWHS 564
+SV Y +Y+YV+ + + V + + E H+
Sbjct: 8 VSVFTYHKKYNPDKHYIYVVRILREGQIEPSFVFRTFDEFQELHN 52
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1,
oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium
frigidimaris}
Length = 312
Score = 40.3 bits (95), Expect = 0.002
Identities = 41/250 (16%), Positives = 70/250 (28%), Gaps = 83/250 (33%)
Query: 61 HKNIFITGASGFVGKVLLEKILRT--CENVKIYILLRPKKNKNSRERLEEIFQSPLYEAL 118
+ I I GA G +G L +K+ + ENV + R+ L
Sbjct: 2 NPKILIIGACGQIGTELTQKLRKLYGTENVIAS---------DIRK-------------L 39
Query: 119 KKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSET-----IHIVYHIAA--TVRFDD 171
+ S FE ++A D + I +Y +AA + +
Sbjct: 40 NTDVVNSGPFEV--------------VNALDFNQIEHLVEVHKITDIYLMAALLSATAEK 85
Query: 172 YMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTA---YCHPKEKVLEEKTYPPPVSPHN 228
LN +LNL+K ++ + S+ ++ + T P +
Sbjct: 86 NPAFAWDLNMNSLFHVLNLAKAK-KIKKIFWPSSIAVFGPTTPKENTPQYTIMEPSTV-- 142
Query: 229 VIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILR-PSIII 286
Y +K E Y G+ +R P +I
Sbjct: 143 ---------------------------YGISKQAGERWCEYYHNIYGVDVRSIRYPGLIS 175
Query: 287 PIWKDPLPGW 296
PG
Sbjct: 176 W---STPPGG 182
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain
rossmann fold, C-terminal mixed alpha/beta domain; HET:
NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Length = 310
Score = 40.3 bits (95), Expect = 0.002
Identities = 35/229 (15%), Positives = 68/229 (29%), Gaps = 75/229 (32%)
Query: 64 IFITGASGFVGKVLLEKILRTCENVKIYI---LLRPKKNKNSRERLEEIFQSPLYEALKK 120
I +TG +GF+G +++ + I + L K N + + + K
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGIT-DILVVDNLKDGTKFVNLVDLNIADY-------MDK 53
Query: 121 EQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAA----TVRFDDYMQTY 176
E I + + ++H A T YM
Sbjct: 54 EDFLIQIMAGEEFGDVEA---------------------IFHEGACSSTTEWDGKYMMDN 92
Query: 177 VFLNTRGTRDMLNLSKQM-IHLQLFVYVSTA--YCHPKEKVLEEKTYPPPVSPHNVIEKA 233
N + ++++L+ + I F+Y S+A Y +E + Y P++
Sbjct: 93 ---NYQYSKELLHYCLEREIP---FLYASSAATYGGRTSDFIESREYEKPLNV------- 139
Query: 234 ELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILR 281
Y Y+K L + V + + + R
Sbjct: 140 ----------------------YGYSKFLFDEYVRQILPEANSQIVGFR 166
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 40.1 bits (93), Expect = 0.002
Identities = 25/170 (14%), Positives = 54/170 (31%), Gaps = 39/170 (22%)
Query: 62 KNIFITGASGFVGKVLLEKILR---TCENVKIYILLRPKKNKNSRERLEEIFQSPLYEAL 118
I G +G +G L E + K+Y + R
Sbjct: 2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVAR----------------------- 38
Query: 119 KKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAAT--VRFDDYMQTY 176
+ + + + D++ PD + + LS + V H+ +
Sbjct: 39 -RTRPAWHEDNPINYVQCDISDPD-----DSQAKLSP-LTDVTHVFYVTWANRSTEQENC 91
Query: 177 VFLNTRGTRDMLN-LSKQMIHLQLFVYVST--AYCHPKEKVLEEKTYPPP 223
N++ R++L+ + +L+ + Y P E + +++ PP
Sbjct: 92 EA-NSKMFRNVLDAVIPNCPNLKHISLQTGRKHYMGPFESYGKIESHDPP 140
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 38.8 bits (90), Expect = 0.005
Identities = 34/231 (14%), Positives = 58/231 (25%), Gaps = 93/231 (40%)
Query: 63 NIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQ 122
NI ITGA GFVGK L + T ++ + + E LE
Sbjct: 2 NIVITGAKGFVGKNLKADLTSTTDHHIFEV-----HRQTKEEELESALLK---------- 46
Query: 123 SESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTR 182
+ H+A R + + + N
Sbjct: 47 ----------------------------------ADFIVHLAGVNRPEHDKEFSL-GNVS 71
Query: 183 GTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELE 242
+L++ + + + +S++ +P
Sbjct: 72 YLDHVLDILTRN-TKKPAILLSSS------------IQATQDNP---------------- 102
Query: 243 LLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDP 292
Y +K E ++ EY E G I R + W P
Sbjct: 103 -------------YGESKLQGEQLLREYAEEYGNTVYIYRWPNLFGKWCKP 140
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N
biosynthes methyltransferase, transferase; 2.3A
{Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A
1z75_A 1z7b_A 1z74_A
Length = 345
Score = 38.5 bits (90), Expect = 0.006
Identities = 27/170 (15%), Positives = 60/170 (35%), Gaps = 37/170 (21%)
Query: 63 NIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQ 122
+ I G +GF+G L E++LR ++ ++Y L + + P +
Sbjct: 2 RVLILGVNGFIGNHLTERLLRE-DHYEVYGL------DIGSDAISRFLNHPHFH------ 48
Query: 123 SESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYM----QTYVF 178
F + GD+++ E + + +V + A +Y +
Sbjct: 49 -----F-----VEGDISIHS-----EWIEYHVKKCDVVLPLVAIATPIEYTRNPLRV-FE 92
Query: 179 LNTRGTRDMLNLSKQMIHLQLFVYVSTA--YCHPKEKVLEEKTYPPPVSP 226
L+ ++ + + + ++ ST+ Y +K +E V P
Sbjct: 93 LDFEENLRIIRYCVK--YRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGP 140
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin C,
SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 38.5 bits (90), Expect = 0.006
Identities = 31/161 (19%), Positives = 62/161 (38%), Gaps = 36/161 (22%)
Query: 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALK 119
E+ I ITGA GF+ + ++ V I KKN++ E +
Sbjct: 28 ENLKISITGAGGFIASHIARRLKHEGHYV---IASDWKKNEHMTE---------DMFCDE 75
Query: 120 KEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTY--- 176
+ + E + + V V+++AA + ++Q+
Sbjct: 76 FHLVDLRVMENCLKVTEGV-------------------DHVFNLAADMGGMGFIQSNHSV 116
Query: 177 -VFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLE 216
++ NT + +M+ ++ ++ F Y S+A +P+ K LE
Sbjct: 117 IMYNNTMISFNMIEAARIN-GIKRFFYASSACIYPEFKQLE 156
>1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain,
phosphoinositide binding, endocytosis/exocytosis
complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1
Length = 117
Score = 36.4 bits (84), Expect = 0.007
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 13/63 (20%)
Query: 644 PSFPPKKI--------RSNQPKVLDERRHLLEIYLKEMFK---FGPSRN--QVLAFLGVN 690
FP K R + P+++DERR LE +L E++ R+ FL ++
Sbjct: 55 YDFPEKPGVLDRRWQRRYDDPEMIDERRIGLERFLNELYNDRFDSRWRDTKIAQDFLQLS 114
Query: 691 SKN 693
N
Sbjct: 115 KPN 117
Score = 34.1 bits (78), Expect = 0.036
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 4/33 (12%)
Query: 533 EKPYYVYVIHVRMFQQHYIVEKRYSELLSWHSE 565
Y +Y + + + KRYSE +
Sbjct: 16 NPKYVLYGVST----PNKRLYKRYSEFWKLKTR 44
>2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase
regulator; NMR {Homo sapiens}
Length = 149
Score = 36.6 bits (84), Expect = 0.008
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 522 ISVSGYRLIECEKPYYVYVIHVRM-FQQHYIVEKRYSELLSWHS 564
+SV G L++ ++ + VR V + + E
Sbjct: 13 VSVQGAALVQIKR-LQTFAFSVRWSDGSDTFVRRSWDEFRQLKK 55
Score = 36.6 bits (84), Expect = 0.010
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 5/58 (8%)
Query: 644 PSFPPKKI--RSNQPKVLDERRHLLEIYLKEMFKFGP--SRN-QVLAFLGVNSKNSQP 696
P + R + R LLE Y + + +R+ + F + +P
Sbjct: 76 PKLLDAPLLGRVGRTSRGLARLQLLETYSRRLLATAERVARSPTITGFFAPQPLDLEP 133
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm
2008} PDB: 3r14_A*
Length = 221
Score = 36.1 bits (83), Expect = 0.021
Identities = 29/175 (16%), Positives = 51/175 (29%), Gaps = 47/175 (26%)
Query: 63 NIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQ 122
I I GA+G + + L +L ++ I + R K +
Sbjct: 7 YITILGAAGQIAQXLTATLLTY-TDMHITLYGRQLK--------------------TRIP 45
Query: 123 SESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTR 182
E E+V I G P + V + VF+
Sbjct: 46 PEIIDHERVTVIEGSFQNP-------------------GXLEQAVTNAE----VVFVGAM 82
Query: 183 GT-RDMLNLSKQMIHL--QLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAE 234
+ DM ++ K + + + VS A + V EK + V + +
Sbjct: 83 ESGSDMASIVKALSRXNIRRVIGVSMAGLSGEFPVALEKWTFDNLPISYVQGERQ 137
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 37.0 bits (86), Expect = 0.022
Identities = 19/161 (11%), Positives = 53/161 (32%), Gaps = 28/161 (17%)
Query: 52 PDRISATLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQ 111
+ + + + G +G +G+ + ++I + N + ++ +I +
Sbjct: 26 EKELQSVVSQSRFLVLGGAGSIGQAVTKEIFK--RNPQKLHVV-------------DISE 70
Query: 112 SPLYEALKKE--QSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAA---- 165
+ + E L ++ S I D+ + + V +++A
Sbjct: 71 NNMVE-LVRDIRSSFGYINGDFQTFALDIGSIEY----DAFIKADGQYDYVLNLSALKHV 125
Query: 166 -TVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVST 205
+ + + + +N T + S + + VST
Sbjct: 126 RSEKDPFTLMRMIDVNVFNTDKTIQQSIDA-GAKKYFCVST 165
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 35.6 bits (82), Expect = 0.054
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQS 112
I I G +G +G+ ++ ++ Y L+R + E EE+ +
Sbjct: 3 NKILILGPTGAIGRHIVWASIKAGNPT--YALVRKTITAANPETKEELIDN 51
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 35.3 bits (81), Expect = 0.054
Identities = 9/48 (18%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEI 109
I + GA+G++G+ + + L ++L+R ++ E+ + +
Sbjct: 5 SRILLIGATGYIGRHVAKASLDLGHPT--FLLVRESTASSNSEKAQLL 50
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK
triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1
MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A*
2gn9_A* 2gna_A*
Length = 344
Score = 35.3 bits (82), Expect = 0.060
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLR 95
L+++ I ITG +G GK + K+L T KI + R
Sbjct: 19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSR 55
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain
dehydrogenase reductase, flavonoi oxidoreductase; HET:
NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Length = 346
Score = 35.4 bits (81), Expect = 0.063
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQS 112
+ I GA+GF+G+ + L YIL RP S+ ++ + +
Sbjct: 11 GRVLIAGATGFIGQFVATASLDAHRPT--YILARPGPRSPSKAKIFKALED 59
>2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide;
phosphoprotein, nucleotide-binding, PIK3C2G, membrane,
PX-domain, transferase, ATP-binding; 1.25A {Homo
sapiens}
Length = 127
Score = 33.7 bits (77), Expect = 0.068
Identities = 10/67 (14%), Positives = 22/67 (32%), Gaps = 9/67 (13%)
Query: 629 YLDFGFFQNKTK-----FSTPSFPPKKIRSNQPKVLDERRHLLEIYLKEMFKFGP---SR 680
+ F ++ + + P FP R L Y++++ +
Sbjct: 59 FEQFSKLHSQLQKQFASLTLPEFPHWWHLPFTN-SDHRRFRDLNHYMEQILNVSHEVTNS 117
Query: 681 NQVLAFL 687
+ VL+F
Sbjct: 118 DCVLSFF 124
Score = 33.3 bits (76), Expect = 0.081
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 521 CISVSGYRLIECEK-PYYVYVIHV-RMFQQHYIVEKRYSELLSWHS 564
+S+ ++ K +Y+I V + + EK + + HS
Sbjct: 22 SMSIERATILGFSKKSSNLYLIQVTHSNNETSLTEKSFEQFSKLHS 67
>1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain,
NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo
sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A
Length = 141
Score = 33.9 bits (77), Expect = 0.078
Identities = 10/45 (22%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 522 ISVSGYRLIECEKPYYVYVIHVRMF-QQHYIVEKRYSELLSWHSE 565
I++ G+ +YVY+ V+ +V +R++E+ +H
Sbjct: 9 IALLGFEKRFVPSQHYVYMFLVKWQDLSEKVVYRRFTEIYEFHKT 53
Score = 32.3 bits (73), Expect = 0.25
Identities = 12/87 (13%), Positives = 24/87 (27%), Gaps = 16/87 (18%)
Query: 629 YLDFGFFQNKTK-----FSTPSFPPKKI--------RSNQPKVLDERRHLLEIYLKEMFK 675
+ + F K + P +I + + + R+ L Y +
Sbjct: 44 FTEIYEFHKTLKEMFPIEAGAINPENRIIPHLPAPKWFDGQRAAENRQGTLTEYCSTLMS 103
Query: 676 FGP--SRNQ-VLAFLGVNSKNSQPQPS 699
SR +L F V + +
Sbjct: 104 LPTKISRCPHLLDFFKVRPDDLKLPTD 130
>2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P,
3-kinase, PX domain, SH3 domain, cytoskeleton, cell
polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A
Length = 156
Score = 33.5 bits (76), Expect = 0.10
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 7/69 (10%)
Query: 644 PSFPPKKIRSNQPKVLDERRHLLEIYLKEMFKFGP--SRNQ-VLAFLGVNSKNSQPQ--- 697
P P + +R+ L IY+ ++ SR++ V + V + +
Sbjct: 87 PYIPGPVPYVTN-SITKKRKEDLNIYVADLVNLPDYISRSEMVHSLFVVLNNGFDREFER 145
Query: 698 PSISLHHYH 706
HH+H
Sbjct: 146 DENGSHHHH 154
Score = 28.1 bits (62), Expect = 6.4
Identities = 6/42 (14%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 523 SVSGYRLIECEKPYYVYVIHVRM-FQQHYIVEKRYSELLSWH 563
SV + L E Y +++ + + +++ Y +
Sbjct: 22 SVESFGL---EDEKYWFLVCCELSNGKTRQLKRYYQDFYDLQ 60
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 34.1 bits (78), Expect = 0.13
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSR 103
+ I G +G++GK ++ + Y+L RP+ N
Sbjct: 5 SRVLIVGGTGYIGKRIVNASISLGHPT--YVLFRPEVVSNID 44
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C,
northeast structural genomics consortium, NESG, C
PSI-biology; 2.00A {Corynebacterium glutamicum}
Length = 516
Score = 34.7 bits (80), Expect = 0.14
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 63 NIFITGASGFVGKVLLEKILRTCENVKIYILLR 95
+ ITG+ G VG+ L ++ ++ L+R
Sbjct: 149 TVAITGSRGLVGRALTAQLQT--GGHEVIQLVR 179
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.14
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 7/32 (21%)
Query: 116 EALKKEQSESAIFEKVIPINGDVAVPDLGISA 147
+ALKK Q+ ++ D A P L I A
Sbjct: 20 QALKKLQASLKLYA---D---DSA-PALAIKA 44
Score = 29.1 bits (64), Expect = 3.5
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 6/26 (23%)
Query: 41 VKAIPKKFK-HLPDR-----ISATLE 60
+K + K + D I AT+E
Sbjct: 22 LKKLQASLKLYADDSAPALAIKATME 47
Score = 28.0 bits (61), Expect = 6.5
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 5/29 (17%)
Query: 211 KE--KVLEE--KTYPPPVSPHNVIEKAEL 235
K+ K L+ K Y +P I KA +
Sbjct: 19 KQALKKLQASLKLYADDSAPALAI-KATM 46
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 33.8 bits (77), Expect = 0.14
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 63 NIFITGASGFVGKVLLEKILR 83
I I GA+G G +LE+
Sbjct: 2 KIGIIGATGRAGSRILEEAKN 22
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins,
biosynthesis, EXO-glycal, rossman transferase; HET: UD1
NAD; 1.90A {Streptomyces chartreusis}
Length = 321
Score = 34.1 bits (79), Expect = 0.14
Identities = 33/170 (19%), Positives = 54/170 (31%), Gaps = 40/170 (23%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKE 121
I ITG +GF+G L ++ + E V + LR E + + P+ E +
Sbjct: 8 HRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIP-PEGTGKFLEKPVLELEE-- 64
Query: 122 QSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQ---TYVF 178
D++ +VYH+A+ + Y+
Sbjct: 65 --------------RDLSDVR----------------LVYHLASHKSVPRSFKQPLDYL- 93
Query: 179 LNTRGTRDMLNLSKQMIHLQLFVYVSTA--YCHPKEKVLEEKTYPPPVSP 226
N R +L L + + V ST Y E + P SP
Sbjct: 94 DNVDSGRHLLALCTSV-GVPKVVVGSTCEVYGQADTLPTPEDSPLSPRSP 142
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi
DSS, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Length = 286
Score = 33.7 bits (77), Expect = 0.18
Identities = 22/169 (13%), Positives = 44/169 (26%), Gaps = 48/169 (28%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKE 121
+ G G+ +VL + + +I R + +++E I S
Sbjct: 6 GTLLSFGH-GYTARVLSRALAP--QGWRIIGTSR------NPDQMEAIRAS--------- 47
Query: 122 QSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNT 181
P+ P L H++ A D +
Sbjct: 48 --------GAEPLLWPGEEPSL----------DGVTHLLISTAPDSGGDPVLAALGDQ-- 87
Query: 182 RGTRDMLNLSKQMIHLQLFVYVSTA--YCHPKEKVLEEKTYPPPVSPHN 228
++ + + Y+ST Y ++E T P +
Sbjct: 88 --------IAARAAQFRWVGYLSTTAVYGDHDGAWVDETTPLTPTAARG 128
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 33.1 bits (76), Expect = 0.20
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLR-PKKNKNSRERLEEIFQ 111
K I I GA+G G L + ++ ++ +L+R + + R +
Sbjct: 4 KKIAIFGATGQTGLTTLAQAVQ--AGYEVTVLVRDSSRLPSEGPRPAHVVV 52
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 33.7 bits (77), Expect = 0.21
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRP 96
I I G +G++G +++ L+ Y+ RP
Sbjct: 12 SKILIFGGTGYIGNHMVKGSLKLGHPT--YVFTRP 44
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET:
NDP; 1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 33.1 bits (75), Expect = 0.22
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 63 NIFITGASGFVGKVLLEKILR 83
I + GA+G G ++ + R
Sbjct: 2 KIAVLGATGRAGSAIVAEARR 22
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 32.7 bits (75), Expect = 0.30
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 63 NIFITGASGFVGKVLLEKILR 83
IFI G++G VGK LL+ +
Sbjct: 2 KIFIVGSTGRVGKSLLKSLST 22
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 32.9 bits (74), Expect = 0.39
Identities = 8/65 (12%), Positives = 17/65 (26%), Gaps = 7/65 (10%)
Query: 80 KILRTCENVKIYILLRPK-------KNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVI 132
L + I + L P + + + K ++ +F I
Sbjct: 302 DRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTI 361
Query: 133 PINGD 137
+N
Sbjct: 362 NLNSM 366
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP;
1.80A {Clarkia breweri}
Length = 321
Score = 32.6 bits (74), Expect = 0.40
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRP 96
+ I I G +G++GK ++ L +I RP
Sbjct: 5 EKIIIYGGTGYIGKFMVRASLSFSHPT--FIYARP 37
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 32.1 bits (73), Expect = 0.49
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 62 KNIFITGASGFVGKVLLEKIL 82
KN+ I GA G + + ++ ++
Sbjct: 24 KNVLILGAGGQIARHVINQLA 44
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative
deamination mechanism, oxidoreductase; HET: PHE NAD;
1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB:
1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Length = 355
Score = 32.1 bits (74), Expect = 0.68
Identities = 9/71 (12%), Positives = 20/71 (28%), Gaps = 16/71 (22%)
Query: 92 ILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING-DVAVPDLGISAED- 149
I L ++ I + E + ++G PD+ ++ D
Sbjct: 81 IALPAPRHSIDPSTWARILR--------------IHAENIDKLSGNYWTGPDVNTNSADM 126
Query: 150 RQMLSETIHIV 160
+ T +
Sbjct: 127 DTLNDTTEFVF 137
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 31.5 bits (72), Expect = 0.79
Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 22/99 (22%)
Query: 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEAL 118
L +KN+ A G +G ++++ N+K +++L +N + L+ I
Sbjct: 3 LTNKNVIFVAALGGIGLDTSRELVK--RNLKNFVILDRVENPTALAELKAINPK------ 54
Query: 119 KKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETI 157
+ DV VP AE +++L +
Sbjct: 55 ----------VNITFHTYDVTVP----VAESKKLLKKIF 79
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 31.8 bits (71), Expect = 0.82
Identities = 8/65 (12%), Positives = 17/65 (26%), Gaps = 7/65 (10%)
Query: 80 KILRTCENVKIYILLRPK-------KNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVI 132
L + I + L P + + + K ++ +F I
Sbjct: 294 DRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTI 353
Query: 133 PINGD 137
+N
Sbjct: 354 NLNSM 358
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural
genomics, APC7755, NADP, P protein structure
initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 31.2 bits (71), Expect = 1.0
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 63 NIFITGASGFVGKVLLEKILR 83
+ + GA+G V + LL ++
Sbjct: 23 RVLVVGANGKVARYLLSELKN 43
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, protein-nucleotide comple binding
protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica}
PDB: 2pzl_A* 2pzk_A*
Length = 330
Score = 31.0 bits (71), Expect = 1.3
Identities = 38/233 (16%), Positives = 62/233 (26%), Gaps = 86/233 (36%)
Query: 63 NIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKN----SRERLEEIFQSPLYEAL 118
I ITG +G +G L+E L + + N RE L + + E
Sbjct: 22 RILITGGAGCLGSNLIEHWLPQGHEILVI--------DNFATGKREVLPPVAGLSVIE-- 71
Query: 119 KKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSET-----IHIVYHIAATVRFDDYM 173
G V D +L V H AA + D
Sbjct: 72 -----------------GSVT---------DAGLLERAFDSFKPTHVVHSAAAYKDPDDW 105
Query: 174 QTYVFLNTRGTRDMLNLSKQMIHLQL--FVYVSTA--YCHPKEKVLEEKTYPPPVSPHNV 229
N +G+ +N++K + + TA Y P + + P +
Sbjct: 106 AEDAATNVQGS---INVAKAASKAGVKRLLNFQTALCYGRPATVPIPIDSPTAPFTS--- 159
Query: 230 IEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILR 281
Y +K E ++ +P + LR
Sbjct: 160 --------------------------YGISKTAGE----AFLMMSDVPVVSLR 182
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain
dehydrogenase reductase, oxidoreductase; HET: NMN AMP;
1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB:
1ujm_A* 1zze_A
Length = 342
Score = 30.7 bits (70), Expect = 1.7
Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 4/21 (19%)
Query: 64 IFITGASGFVG----KVLLEK 80
+ +TGA+GFV + LLE
Sbjct: 14 VLVTGANGFVASHVVEQLLEH 34
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA;
3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Length = 660
Score = 31.2 bits (71), Expect = 1.8
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSP 113
+ I G +GF+G L E++LR ++ ++Y L + + P
Sbjct: 316 TRVLILGVNGFIGNHLTERLLRE-DHYEVYGL------DIGSDAISRFLNHP 360
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 30.4 bits (69), Expect = 1.8
Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 16/88 (18%)
Query: 56 SATLEHKNIFITGASGFVGKVLLEKILRTC-ENVKIYILLRPKKNKNSRERLEEIFQSPL 114
+ L +TGAS G+ L ++ R + + R S L +
Sbjct: 1 ADGLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSAR------SESMLRQ------ 48
Query: 115 YEALKKEQSESAIFEKVIPINGDVAVPD 142
LK+E KV+ D+
Sbjct: 49 ---LKEELGAQQPDLKVVLAAADLGTEA 73
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 30.3 bits (69), Expect = 2.0
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 12 PSHLEHLPDRIAS--SLKDKHIFMTGASGFIVKAIPKKFK 49
H H + S K+I + G SG + + K FK
Sbjct: 4 SHHHHHHSSGLVPRGSHMSKNILVLGGSGALGAEVVKFFK 43
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain
dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A
{Salmonella typhi} SCOP: c.2.1.2
Length = 347
Score = 30.2 bits (69), Expect = 2.1
Identities = 26/156 (16%), Positives = 48/156 (30%), Gaps = 44/156 (28%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKE 121
+ ITG GF+G L L ++ ++ L K ++ L + +E
Sbjct: 2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDN---LHWLSSLGNFE----- 53
Query: 122 QSESAIFEKVIPINGDVAVPDLGISAEDRQMLSET-----IHIVYHIAATVRFD------ 170
F GD+ ++ ++ +H+A V
Sbjct: 54 ------FVH-----GDIR---------NKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNP 93
Query: 171 -DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVST 205
+ N GT ++L +Q +Y ST
Sbjct: 94 CMDFEI----NVGGTLNLLEAVRQYNSNCNIIYSST 125
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA
methyltransferase, ribosome RNA, SAH, RLML; HET: SAH
OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Length = 703
Score = 30.8 bits (70), Expect = 2.3
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 167 VRFDDYMQTYVFLNTRGTRDML-NLSKQMIHLQLFVYVSTAYCH 209
V DY+ T +FL+ R R ML +SK L LF Y +A H
Sbjct: 513 VNLTDYLDTGLFLDHRIARRMLGQMSKGKDFLNLFSYTGSATVH 556
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain
dehydrogenase/reductase, rossmann fold, BIO protein;
HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2
PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Length = 404
Score = 30.5 bits (69), Expect = 2.4
Identities = 54/331 (16%), Positives = 90/331 (27%), Gaps = 69/331 (20%)
Query: 64 IFITGASGFVGKVLLEKILRTCENVKIYILL--RPKKNKNSRERLEEIFQSP-LYEALKK 120
+ + G G+ G + + V I L R ++ E L I K
Sbjct: 14 VMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKA 73
Query: 121 EQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSET-----IHIVYHIAA------TVRF 169
+S GD+ D + L+E+ V H ++
Sbjct: 74 LTGKSIELYV-----GDIC---------DFEFLAESFKSFEPDSVVHFGEQRSAPYSMID 119
Query: 170 DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTA--YCHPKEKVLEEKTYPPPVSPH 227
N GT ++L K+ V + T Y P + E Y H
Sbjct: 120 RSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEE--GYIT--ITH 175
Query: 228 NVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIII 286
N K + Y +K + +A G+ L ++
Sbjct: 176 NGRTDTLPYPKQAS------------SFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVY 223
Query: 287 PIWKDP------LPGWTDNINGPTGLLI------GAGKGIIRTMY-CDYSTCADFLPVDV 333
+ D L D L G + T+Y T +L +
Sbjct: 224 GVKTDETEMHEELRNRLDYDAVFGTALNRFCVQAAVGHPL--TVYGKGGQT-RGYLDIRD 280
Query: 334 LVNGVLLSTWNFLSNPGNT--MRVINLTANK 362
V V ++ ++NP RV N +
Sbjct: 281 TVQCVEIA----IANPAKAGEFRVFNQFTEQ 307
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 29.9 bits (68), Expect = 2.5
Identities = 10/37 (27%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 63 NIFITGASGFVGKVLLEKILRTCENVKIYILLR-PKK 98
+I +TGA+G +G ++++ +L+ +I ++R +K
Sbjct: 2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEK 38
>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine
biosynthesis, NADP+ oxidoreductase (phosphorylating),
domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3
d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A
1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A*
1nx6_A* 1pu2_A* 1q2x_A*
Length = 367
Score = 30.3 bits (69), Expect = 2.5
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 62 KNIFITGASGFVGKVLLEKIL 82
+N+ G G VG VL+++++
Sbjct: 2 QNVGFIGWRGMVGSVLMQRMV 22
>3nz3_A SPR1345 protein, putative uncharacterized protein; all beta sheets,
IG-like fold, mucin-binding, mucin, cell SU cell
adhesion; HET: PGE; 2.00A {Streptococcus pneumoniae}
Length = 112
Score = 28.7 bits (64), Expect = 2.9
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 154 SETIHIVYHIAATVRFDDYMQTYVFLNTR-GTRD 186
+ IH V + +D +Q +R T +
Sbjct: 23 TRIIHYVDKVTNQNVKEDVVQPVTL--SRTKTEN 54
>2l82_A Designed protein OR32; structural genomics, northeast structural
genomics consortiu PSI-biology, protein structure
initiative, de novo protein; NMR {Artificial gene}
Length = 162
Score = 29.4 bits (65), Expect = 3.0
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 77 LLEKILRTC--ENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSE 124
+L++I+R + V++ +L + K RERLEE F+ + E E
Sbjct: 14 ILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEE-FEKQGVDVRTVEDKE 62
>1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein;
HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP:
d.189.1.1 PDB: 1ocu_A*
Length = 162
Score = 29.2 bits (65), Expect = 3.1
Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 644 PSFPPKKIRSNQ--PKVLDERRHLLEIYLK 671
P P K + SN+ +V++ERR L +++
Sbjct: 107 PHLPGKILLSNRFSNEVIEERRQGLNTWMQ 136
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A
{Escherichia coli} PDB: 2zcv_A*
Length = 286
Score = 29.9 bits (68), Expect = 3.1
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 64 IFITGASGFVGKVLLEKILRTCENVKIYILLR-PKK 98
I ITGA+G +G ++E +++T +I ++R P K
Sbjct: 2 IAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAK 37
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain
dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis
vinifera} PDB: 3hfs_A
Length = 338
Score = 29.9 bits (68), Expect = 3.5
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 4/23 (17%)
Query: 62 KNIFITGASGFVG----KVLLEK 80
K + G +GFV K+LL+K
Sbjct: 10 KTACVVGGTGFVASLLVKLLLQK 32
>3lra_A Disks large homolog 1, maguk P55 subfamily member protein LIN-7
homolog C; tripartite complex, L27 tetramer, cell
junction; 2.95A {Homo sapiens} PDB: 1rso_A
Length = 254
Score = 29.5 bits (65), Expect = 3.5
Identities = 27/158 (17%), Positives = 57/158 (36%), Gaps = 33/158 (20%)
Query: 100 KNSRERLEEIFQSPLYEAL--KKEQSESAIFEK-VIPINGDVAVPDLGISAEDRQMLSET 156
++S ER+ IFQS L++AL +E E + + + + D G+ ++L+
Sbjct: 30 RSSIERVINIFQSNLFQALIDIQEFYEVTLLDNPKLEVLFQGPGSDTGLY----ELLAAL 85
Query: 157 IHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLE 216
+ + ++ ++ +H + ++ EK+
Sbjct: 86 PAQLQPHVDSQEDLTFLWDM-------------FGEKSLHSLVKIH---------EKLHY 123
Query: 217 EKTYPP-PVSPHNV---IEKAELLSKNELELLKQELLQ 250
+ P P+ + AE L L +ELL+
Sbjct: 124 YEKQSPVPILHGAAALADDLAEELQNKPLNSEIRELLK 161
>2lta_A De novo designed protein; structural genomics, northeast structural
genomics consortiu PSI-biology, protein structure
initiative; NMR {Artificial gene}
Length = 110
Score = 28.2 bits (62), Expect = 4.0
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 77 LLEKILRTC--ENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSE 124
LE++ R E +++YILL+ K K E++++ +S +E K + +
Sbjct: 15 TLEELARKIKDEGLEVYILLKDKDEKRLEEKIQK-LKSQGFEVRKVKDDD 63
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase
reductase, NADPH, dihydroquercetin, rossmann fold,
oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera}
PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Length = 337
Score = 29.5 bits (67), Expect = 4.7
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 4/23 (17%)
Query: 62 KNIFITGASGFVG----KVLLEK 80
+ + +TGASGF+G LLE+
Sbjct: 6 ETVCVTGASGFIGSWLVMRLLER 28
>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination;
2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1
Length = 290
Score = 29.0 bits (66), Expect = 4.9
Identities = 8/52 (15%), Positives = 18/52 (34%), Gaps = 15/52 (28%)
Query: 176 YVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPH 227
+F + R + +++Q ++ Y A + +SPH
Sbjct: 206 VLFPSQRAQQ----MTRQTFWHRIKHYAVLAGIDSE-----------KLSPH 242
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar,
3-hexulose-6-phosphate isomerase structural genomics;
HET: CME CIT; 2.00A {Methanocaldococcus jannaschii}
SCOP: c.80.1.3
Length = 180
Score = 28.5 bits (64), Expect = 5.5
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 10 DIPSHLEHLPDRIASSLKDKHIFMTGA--SGFIVKAIPKKFKHL 51
+ + L+ L DRI +K K IF+ G SG+I + + HL
Sbjct: 25 EWKNKLDSLIDRI---IKAKKIFIFGVGRSGYIGRCFAMRLMHL 65
>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP,
oxidoreductase-oxidoreductase inhibitor complex; HET:
NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A
Length = 370
Score = 29.1 bits (66), Expect = 5.5
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 63 NIFITGASGFVGKVLLEKIL 82
+ + G G VG VL+++++
Sbjct: 2 RVGLVGWRGMVGSVLMQRMV 21
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 29.0 bits (65), Expect = 6.3
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 24 SSLKDKHIFMTGASGFIVKAIPKKF 48
L +F+TGAS I KAI K
Sbjct: 41 GRLAGCTVFITGASRGIGKAIALKA 65
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 1.95A {Bacillus subtilis} SCOP:
c.80.1.3 PDB: 1viv_A
Length = 186
Score = 28.5 bits (64), Expect = 6.6
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 12 PSHLEHLPDRIASSLKDKHIFMTGA--SGFIVKAIPKKFKHL 51
+ L D I SS IF GA SG + K+ + H+
Sbjct: 24 NEEADQLADHILSS---HQIFTAGAGRSGLMAKSFAMRLMHM 62
>2g7z_A Conserved hypothetical protein SPY1493; long-fatty acid binding
protein, lipid binding protein, PSI, structural
genomics; HET: MSE HXA; 2.05A {Streptococcus pyogenes}
Length = 282
Score = 28.7 bits (65), Expect = 7.2
Identities = 9/46 (19%), Positives = 22/46 (47%)
Query: 66 ITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQ 111
I +G + +L K++ +N ++ L++ + NK + L+
Sbjct: 176 IGRVTGVLSSLLNVKVVMALKNDELKTLVKGRGNKTFTKWLDSYLA 221
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 28.3 bits (64), Expect = 7.4
Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 12/72 (16%)
Query: 74 GK-VLLE------KILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESA 126
K +L+ KI+RT E + + P + E Q ++ +
Sbjct: 110 NKIAILDIEPQTLKIVRTAELSPFIVFIAPT----DQGTQTEALQQLQKDSEAIRSQYAH 165
Query: 127 IFEKVIPINGDV 138
F+ + +N V
Sbjct: 166 YFDLSL-VNNGV 176
>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A,
GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter
vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*
Length = 220
Score = 28.5 bits (64), Expect = 7.7
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 54 RISATLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNK 100
SA+L + I G G KV++E + E V + P +
Sbjct: 5 AASASLAIGGVVIIGGGGH-AKVVIESLRACGETVAAIVDADPTRRA 50
>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid,
plant protein; 1.40A {Medicago sativa}
Length = 322
Score = 28.7 bits (65), Expect = 7.7
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 4/23 (17%)
Query: 62 KNIFITGASGFVG----KVLLEK 80
+ +TG +GF+G K LLE
Sbjct: 2 GRVCVTGGTGFLGSWIIKSLLEN 24
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 28.4 bits (64), Expect = 8.8
Identities = 9/47 (19%), Positives = 17/47 (36%)
Query: 2 QMSSPWIPDIPSHLEHLPDRIASSLKDKHIFMTGASGFIVKAIPKKF 48
Q P + E ++ L + + +TG + I + I F
Sbjct: 15 QTQGPGSMLVVESAEPAERKVMFDLSARSVLVTGGTKGIGRGIATVF 61
>3fys_A Protein DEGV; fatty acid-binding, EDD fold, fatty acid-binding
protein; HET: PLM; 2.50A {Bacillus subtilis}
Length = 315
Score = 28.4 bits (64), Expect = 9.0
Identities = 10/46 (21%), Positives = 21/46 (45%)
Query: 66 ITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQ 111
++ A F+G +L K + +N I + + K + R+ E+
Sbjct: 207 LSSAQAFIGSLLKVKPILHFDNKVIVPFEKIRTRKKAISRIYELLD 252
>1ej6_A Lambda2; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_U
Length = 1289
Score = 28.7 bits (63), Expect = 9.0
Identities = 10/54 (18%), Positives = 22/54 (40%)
Query: 684 LAFLGVNSKNSQPQPSISLHHYHFVFRTKTNDYRTPVDSSRPKRIEHLPVFIVN 737
+ G+ + + SI+++ H R+P + R R+ +LP+
Sbjct: 725 IGISGLCANVGNARKSIAIYESHGARVLTITSRRSPASARRKSRLRYLPLIDPR 778
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.429
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,361,719
Number of extensions: 776964
Number of successful extensions: 2164
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2129
Number of HSP's successfully gapped: 128
Length of query: 762
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 661
Effective length of database: 3,881,772
Effective search space: 2565851292
Effective search space used: 2565851292
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.3 bits)