BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7545
(235 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To
Gtpgammas
pdb|1Z5W|A Chain A, Crystal Structure Of Gamma-Tubulin Bound To Gtp
Length = 474
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
Query: 78 GGEVWKS-----ELMTEDWTDKVRSFVEECDCLQGFQILSDATGGFG-GLCASSLQHLKD 131
G W S E + ED D + + D L+GF + GG G GL + L+ L D
Sbjct: 100 AGNNWASGFSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLND 159
Query: 132 EYSTKSCLVFPVIPPQTLESNFKLRNVNTALFFASLSELSD 172
Y K + V P Q S+ ++ N+ L L++ +D
Sbjct: 160 RYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNAD 200
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
pdb|3CB2|B Chain B, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
Length = 475
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
Query: 78 GGEVWKS-----ELMTEDWTDKVRSFVEECDCLQGFQILSDATGGFG-GLCASSLQHLKD 131
G W S E + ED D + + D L+GF + GG G GL + L+ L D
Sbjct: 100 AGNNWASGFSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLND 159
Query: 132 EYSTKSCLVFPVIPPQTLESNFKLRNVNTALFFASLSELSD 172
Y K + V P Q S+ ++ N+ L L++ +D
Sbjct: 160 RYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNAD 200
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|D Chain D, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 445
Score = 34.3 bits (77), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 61/146 (41%), Gaps = 20/146 (13%)
Query: 19 ENSSQPFDCYLQDCKNYQLEESVKYWSDFMRTRYHPKSFNLIQEYQHENS--SQPF---- 72
E+ P Y D + QLE Y+++ +Y P++ + E +S S PF
Sbjct: 27 EHGIDPTGSYHGDS-DLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIF 85
Query: 73 --DCYLQG----GEVWKSELMTEDW------TDKVRSFVEECDCLQGFQILSDATGGFGG 120
D ++ G G W TE D VR E CDCLQGFQ+ GG G
Sbjct: 86 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGS 145
Query: 121 LCASSL-QHLKDEYSTKSCLVFPVIP 145
+ L +++EY + F V+P
Sbjct: 146 GMGTLLISKIREEYPDRIMNTFSVVP 171
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|D Chain D, Tubulin:stathmin-Like Domain Complex
pdb|1JFF|B Chain B, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|1IA0|B Chain B, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|1SA0|B Chain B, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|D Chain D, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|B Chain B, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|D Chain D, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|2HXF|B Chain B, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|B Chain B, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|B Chain B, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
pdb|3EDL|B Chain B, Kinesin13-Microtubule Ring Complex
pdb|3EDL|G Chain G, Kinesin13-Microtubule Ring Complex
pdb|3DCO|B Chain B, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|B Chain B, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|B Chain B, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|A Chain A, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|C Chain C, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|E Chain E, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|G Chain G, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
Length = 445
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 61/146 (41%), Gaps = 20/146 (13%)
Query: 19 ENSSQPFDCYLQDCKNYQLEESVKYWSDFMRTRYHPKSFNLIQEYQHENS--SQPF---- 72
E+ P Y D + QLE Y+++ +Y P++ + E +S S PF
Sbjct: 27 EHGIDPTGSYHGDS-DLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGPFGQIF 85
Query: 73 --DCYLQG----GEVWKSELMTEDW------TDKVRSFVEECDCLQGFQILSDATGGFGG 120
D ++ G G W TE D VR E CDCLQGFQ+ GG G
Sbjct: 86 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGS 145
Query: 121 LCASSL-QHLKDEYSTKSCLVFPVIP 145
+ L +++EY + F V+P
Sbjct: 146 GMGTLLISKIREEYPDRIMNTFSVVP 171
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|C Chain C, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|E Chain E, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|G Chain G, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|A Chain A, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|C Chain C, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|E Chain E, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|G Chain G, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|A Chain A, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|B Chain B, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|B Chain B, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 445
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 61/146 (41%), Gaps = 20/146 (13%)
Query: 19 ENSSQPFDCYLQDCKNYQLEESVKYWSDFMRTRYHPKSFNLIQEYQHENS--SQPF---- 72
E+ P Y D + QLE Y+++ +Y P++ + E +S S PF
Sbjct: 27 EHGIDPTGSYHGDS-DLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGPFGQIF 85
Query: 73 --DCYLQG----GEVWKSELMTEDW------TDKVRSFVEECDCLQGFQILSDATGGFGG 120
D ++ G G W TE D VR E CDCLQGFQ+ GG G
Sbjct: 86 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGS 145
Query: 121 LCASSL-QHLKDEYSTKSCLVFPVIP 145
+ L +++EY + F V+P
Sbjct: 146 GMGTLLISKIREEYPDRIMNTFSVVP 171
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|B Chain B, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
pdb|3J1T|C Chain C, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|C Chain C, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 427
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 61/146 (41%), Gaps = 20/146 (13%)
Query: 19 ENSSQPFDCYLQDCKNYQLEESVKYWSDFMRTRYHPKSFNLIQEYQHENS--SQPF---- 72
E+ P Y D + QLE Y+++ +Y P++ + E +S S PF
Sbjct: 27 EHGIDPTGSYHGDS-DLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGPFGQIF 85
Query: 73 --DCYLQG----GEVWKSELMTEDW------TDKVRSFVEECDCLQGFQILSDATGGFGG 120
D ++ G G W TE D VR E CDCLQGFQ+ GG G
Sbjct: 86 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGS 145
Query: 121 LCASSL-QHLKDEYSTKSCLVFPVIP 145
+ L +++EY + F V+P
Sbjct: 146 GMGTLLISKIREEYPDRIMNTFSVVP 171
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYC|D Chain D, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|B Chain B, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|D Chain D, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|B Chain B, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|D Chain D, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|B Chain B, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|D Chain D, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|4F6R|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|3UT5|B Chain B, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|3UT5|D Chain D, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|B Chain B, Tubulin-vinblastine: Stathmin-like Complex
pdb|4EB6|D Chain D, Tubulin-vinblastine: Stathmin-like Complex
Length = 445
Score = 33.5 bits (75), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 61/146 (41%), Gaps = 20/146 (13%)
Query: 19 ENSSQPFDCYLQDCKNYQLEESVKYWSDFMRTRYHPKSFNLIQEYQHENS--SQPF---- 72
E+ P Y D + QLE Y+++ +Y P++ + E +S S PF
Sbjct: 27 EHGIDPTGSYHGDS-DLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIF 85
Query: 73 --DCYLQG----GEVWKSELMTEDW------TDKVRSFVEECDCLQGFQILSDATGGFGG 120
D ++ G G W TE D VR E CDCLQGFQ+ GG G
Sbjct: 86 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGS 145
Query: 121 LCASSL-QHLKDEYSTKSCLVFPVIP 145
+ L +++EY + F V+P
Sbjct: 146 GMGTLLISKIREEYPDRIMNTFSVMP 171
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I4T|D Chain D, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I50|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I50|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I55|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4I55|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IIJ|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IIJ|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IHJ|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
pdb|4IHJ|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 445
Score = 33.5 bits (75), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 61/146 (41%), Gaps = 20/146 (13%)
Query: 19 ENSSQPFDCYLQDCKNYQLEESVKYWSDFMRTRYHPKSFNLIQEYQHENS--SQPF---- 72
E+ P Y D + QLE Y+++ +Y P++ + E +S S PF
Sbjct: 27 EHGIDPTGSYHGDS-DLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIF 85
Query: 73 --DCYLQG----GEVWKSELMTEDW------TDKVRSFVEECDCLQGFQILSDATGGFGG 120
D ++ G G W TE D VR E CDCLQGFQ+ GG G
Sbjct: 86 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGS 145
Query: 121 LCASSL-QHLKDEYSTKSCLVFPVIP 145
+ L +++EY + F V+P
Sbjct: 146 GMGTLLISKIREEYPDRIMNTFSVMP 171
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3DU7|D Chain D, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|B Chain B, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3E22|D Chain D, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3HKB|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|D Chain D, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|B Chain B, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|D Chain D, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|B Chain B, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|D Chain D, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|B Chain B, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|D Chain D, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|B Chain B, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|D Chain D, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|B Chain B, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|D Chain D, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 445
Score = 33.5 bits (75), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 61/146 (41%), Gaps = 20/146 (13%)
Query: 19 ENSSQPFDCYLQDCKNYQLEESVKYWSDFMRTRYHPKSFNLIQEYQHENS--SQPF---- 72
E+ P Y D + QLE Y+++ +Y P++ + E +S S PF
Sbjct: 27 EHGIDPTGSYHGDS-DLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIF 85
Query: 73 --DCYLQG----GEVWKSELMTEDW------TDKVRSFVEECDCLQGFQILSDATGGFGG 120
D ++ G G W TE D VR E CDCLQGFQ+ GG G
Sbjct: 86 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGS 145
Query: 121 LCASSL-QHLKDEYSTKSCLVFPVIP 145
+ L +++EY + F V+P
Sbjct: 146 GMGTLLISKIREEYPDRIMNTFSVMP 171
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|4F61|D Chain D, Tubulin:stathmin-Like Domain Complex
pdb|4F61|F Chain F, Tubulin:stathmin-Like Domain Complex
pdb|4F61|H Chain H, Tubulin:stathmin-Like Domain Complex
Length = 445
Score = 33.5 bits (75), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 61/146 (41%), Gaps = 20/146 (13%)
Query: 19 ENSSQPFDCYLQDCKNYQLEESVKYWSDFMRTRYHPKSFNLIQEYQHENS--SQPF---- 72
E+ P Y D + QLE Y+++ +Y P++ + E +S S PF
Sbjct: 27 EHGIDPTGSYHGDS-DLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIF 85
Query: 73 --DCYLQG----GEVWKSELMTEDW------TDKVRSFVEECDCLQGFQILSDATGGFGG 120
D ++ G G W TE D VR E CDCLQGFQ+ GG G
Sbjct: 86 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGS 145
Query: 121 LCASSL-QHLKDEYSTKSCLVFPVIP 145
+ L +++EY + F V+P
Sbjct: 146 GMGTLLISKIREEYPDRIMNTFSVMP 171
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|D Chain D, Gtp-Tubulin In Complex With A Darpin
Length = 431
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 61/146 (41%), Gaps = 20/146 (13%)
Query: 19 ENSSQPFDCYLQDCKNYQLEESVKYWSDFMRTRYHPKSFNLIQEYQHENS--SQPF---- 72
E+ P Y D + QLE Y+++ +Y P++ + E +S S PF
Sbjct: 27 EHGIDPTGSYHGDS-DLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIF 85
Query: 73 --DCYLQG----GEVWKSELMTEDW------TDKVRSFVEECDCLQGFQILSDATGGFGG 120
D ++ G G W TE D VR E CDCLQGFQ+ GG G
Sbjct: 86 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGS 145
Query: 121 LCASSL-QHLKDEYSTKSCLVFPVIP 145
+ L +++EY + F V+P
Sbjct: 146 GMGTLLISKIREEYPDRIMNTFSVMP 171
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 463
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 54/130 (41%), Gaps = 13/130 (10%)
Query: 54 PKSFNLIQEYQHENSSQPFDCYLQG----GEVWKSELMTEDW------TDKVRSFVEECD 103
P + + ++ N +P D Y+ G G VW TE D +R E CD
Sbjct: 70 PGTIDAVRNSAIGNLFRP-DNYIFGQSSAGNVWAKGHYTEGAELVDSVMDVIRREAEGCD 128
Query: 104 CLQGFQILSDATGGFGGLCASSL-QHLKDEYSTKSCLVFPVIPPQTLESNFKLRNVNTAL 162
LQGFQI GG G + L +++E+ + F V+P S+ ++ N L
Sbjct: 129 SLQGFQITHSLGGGTGSGMGTLLISKIREEFPDRMMATFSVLPSPK-RSDTRVEPYNATL 187
Query: 163 FFASLSELSD 172
L E SD
Sbjct: 188 SVHQLVEHSD 197
>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
pdb|2BVA|B Chain B, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 292
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 59 LIQEYQHENSSQPFDCYLQGGEVW 82
++++YQHEN + ++ YL G E+W
Sbjct: 70 IMRDYQHENVVEMYNSYLVGDELW 93
>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Pf-03758309
pdb|4APP|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With (S)-N-(5-(3-Benzyl-1-Methylpiperazine-4-
Carbonyl)-6,6-Dimethyl-1,4,5,6-Tetrahydropyrrolo(3,4-C)
Pyrazol-3-Yl)-3-Phenoxybenzamide
Length = 296
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 59 LIQEYQHENSSQPFDCYLQGGEVW 82
++++YQHEN + ++ YL G E+W
Sbjct: 74 IMRDYQHENVVEMYNSYLVGDELW 97
>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In
Complex With A Consensus Peptide
Length = 301
Score = 30.4 bits (67), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 59 LIQEYQHENSSQPFDCYLQGGEVW 82
++++YQHEN + ++ YL G E+W
Sbjct: 79 IMRDYQHENVVEMYNSYLVGDELW 102
>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Cgp74514a
pdb|2J0I|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 303
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 59 LIQEYQHENSSQPFDCYLQGGEVW 82
++++YQHEN + ++ YL G E+W
Sbjct: 81 IMRDYQHENVVEMYNSYLVGDELW 104
>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIF|B Chain B, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIG|A Chain A, Catalytic Domain Of Human Pak4
pdb|4FIG|B Chain B, Catalytic Domain Of Human Pak4
pdb|4FIH|A Chain A, Catalytic Domain Of Human Pak4 With Qkftglprqw Peptide
pdb|4FII|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIJ|A Chain A, Catalytic Domain Of Human Pak4
Length = 346
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 59 LIQEYQHENSSQPFDCYLQGGEVW 82
++++YQHEN + ++ YL G E+W
Sbjct: 124 IMRDYQHENVVEMYNSYLVGDELW 147
>pdb|4FIE|A Chain A, Full-Length Human Pak4
pdb|4FIE|B Chain B, Full-Length Human Pak4
Length = 423
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 59 LIQEYQHENSSQPFDCYLQGGEVW 82
++++YQHEN + ++ YL G E+W
Sbjct: 201 IMRDYQHENVVEMYNSYLVGDELW 224
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 447
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 75 YLQGGEVWKSELMTEDWTDKVRSFVEECDCLQGF 108
Y +G E++ D D++R ++CD LQGF
Sbjct: 104 YARGHYTVGREILG-DVLDRIRKLADQCDGLQGF 136
>pdb|2XOL|A Chain A, High Resolution Structure Of Ttrd From Archaeoglobus
Fulgidus
pdb|2XOL|B Chain B, High Resolution Structure Of Ttrd From Archaeoglobus
Fulgidus
pdb|2Y6Y|A Chain A, Crystal Structure Of Ttrd From Archaeoglobus Fulgidus
pdb|2YJM|A Chain A, Structure Of Ttrd From Archaeoglobus Fulgidus
Length = 176
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 157 NVNTALFFASLSEL-SDVFSPLSISSDCWNQTETYRKFPYMEYNVRECIMKELNNSAYLE 215
+ A +A+LS++ +F +I DC E KF +++N+R +++EL S ++
Sbjct: 4 TIGRAKVYATLSKIFYHLFYDEAIPKDC---REIIEKFGEIDFNLRSVLVRELRGSVLIK 60
>pdb|2IDG|A Chain A, Crystal Structure Of Hypothetical Protein Af0160 From
Archaeoglobus Fulgidus
pdb|2IDG|B Chain B, Crystal Structure Of Hypothetical Protein Af0160 From
Archaeoglobus Fulgidus
pdb|2IDG|C Chain C, Crystal Structure Of Hypothetical Protein Af0160 From
Archaeoglobus Fulgidus
Length = 175
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 157 NVNTALFFASLSEL-SDVFSPLSISSDCWNQTETYRKFPYMEYNVRECIMKELNNSAYLE 215
+ A +A+LS++ +F +I DC E KF +++N+R +++EL S ++
Sbjct: 3 TIGRAKVYATLSKIFYHLFYDEAIPKDC---REIIEKFGEIDFNLRSVLVRELRGSVLIK 59
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|1IA0|A Chain A, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|A Chain A, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|A Chain A, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|A Chain A, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 451
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 10/102 (9%)
Query: 49 RTRYHPKSFNLIQEYQHENSSQPFDCYLQGGEVWKSELMTEDWTDKVRSFVEECDCLQGF 108
R +HP+ +E N ++ Y G E+ L D++R ++C LQGF
Sbjct: 84 RQLFHPEQLITGKEDAANNYARGH--YTIGKEIIDLVL------DRIRKLADQCTGLQGF 135
Query: 109 QILSDATGGFGGLCASSL-QHLKDEYSTKSCLVFPVIP-PQT 148
+ GG G S L + L +Y KS L F + P PQ
Sbjct: 136 SVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQV 177
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|C Chain C, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|A Chain A, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|C Chain C, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|3EDL|F Chain F, Kinesin13-Microtubule Ring Complex
Length = 451
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 10/102 (9%)
Query: 49 RTRYHPKSFNLIQEYQHENSSQPFDCYLQGGEVWKSELMTEDWTDKVRSFVEECDCLQGF 108
R +HP+ +E N ++ Y G E+ L D++R ++C LQGF
Sbjct: 84 RQLFHPEQLITGKEDAANNYARGH--YTIGKEIIDLVL------DRIRKLADQCTGLQGF 135
Query: 109 QILSDATGGFGGLCASSL-QHLKDEYSTKSCLVFPVIP-PQT 148
+ GG G S L + L +Y KS L F + P PQ
Sbjct: 136 SVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQV 177
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|D Chain D, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|F Chain F, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|H Chain H, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|B Chain B, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|D Chain D, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|F Chain F, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|H Chain H, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|B Chain B, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|A Chain A, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|A Chain A, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 452
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 10/102 (9%)
Query: 49 RTRYHPKSFNLIQEYQHENSSQPFDCYLQGGEVWKSELMTEDWTDKVRSFVEECDCLQGF 108
R +HP+ +E N ++ Y G E+ L D++R ++C LQGF
Sbjct: 84 RQLFHPEQLITGKEDAANNYARGH--YTIGKEIIDLVL------DRIRKLADQCTGLQGF 135
Query: 109 QILSDATGGFGGLCASSL-QHLKDEYSTKSCLVFPVIP-PQT 148
+ GG G S L + L +Y KS L F + P PQ
Sbjct: 136 SVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQV 177
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|3EDL|A Chain A, Kinesin13-Microtubule Ring Complex
pdb|3DCO|A Chain A, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|A Chain A, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|A Chain A, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|B Chain B, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|D Chain D, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|F Chain F, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|H Chain H, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|3J1T|B Chain B, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|B Chain B, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 451
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 10/102 (9%)
Query: 49 RTRYHPKSFNLIQEYQHENSSQPFDCYLQGGEVWKSELMTEDWTDKVRSFVEECDCLQGF 108
R +HP+ +E N ++ Y G E+ L D++R ++C LQGF
Sbjct: 84 RQLFHPEQLITGKEDAANNYARGH--YTIGKEIIDLVL------DRIRKLADQCTGLQGF 135
Query: 109 QILSDATGGFGGLCASSL-QHLKDEYSTKSCLVFPVIP-PQT 148
+ GG G S L + L +Y KS L F + P PQ
Sbjct: 136 SVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQV 177
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|A Chain A, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
Length = 440
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 10/102 (9%)
Query: 49 RTRYHPKSFNLIQEYQHENSSQPFDCYLQGGEVWKSELMTEDWTDKVRSFVEECDCLQGF 108
R +HP+ +E N ++ Y G E+ L D++R ++C LQGF
Sbjct: 84 RQLFHPEQLITGKEDAANNYARGH--YTIGKEIIDLVL------DRIRKLADQCTGLQGF 135
Query: 109 QILSDATGGFGGLCASSL-QHLKDEYSTKSCLVFPVIP-PQT 148
+ GG G S L + L +Y KS L F + P PQ
Sbjct: 136 SVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQV 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,230,761
Number of Sequences: 62578
Number of extensions: 283738
Number of successful extensions: 611
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 574
Number of HSP's gapped (non-prelim): 41
length of query: 235
length of database: 14,973,337
effective HSP length: 96
effective length of query: 139
effective length of database: 8,965,849
effective search space: 1246253011
effective search space used: 1246253011
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)