Query psy7545
Match_columns 235
No_of_seqs 158 out of 1225
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 21:07:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7545.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7545hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5023 Tubulin [Cytoskeleton] 100.0 1.8E-47 3.9E-52 341.2 10.2 200 6-214 14-238 (443)
2 KOG1374|consensus 100.0 3.8E-41 8.3E-46 301.0 9.5 206 5-214 14-241 (448)
3 cd06060 misato Human Misato sh 100.0 7.2E-39 1.6E-43 302.0 12.0 191 35-225 81-280 (493)
4 PLN00221 tubulin alpha chain; 100.0 6.3E-39 1.4E-43 300.8 11.2 204 6-213 14-239 (450)
5 PTZ00335 tubulin alpha chain; 100.0 1.2E-37 2.7E-42 291.9 11.2 199 6-213 14-239 (448)
6 cd02188 gamma_tubulin Gamma-tu 100.0 2E-37 4.4E-42 289.2 10.2 205 6-214 13-239 (431)
7 cd02186 alpha_tubulin The tubu 100.0 6.5E-37 1.4E-41 286.3 11.7 204 6-213 13-238 (434)
8 PLN00222 tubulin gamma chain; 100.0 3.7E-37 8E-42 289.0 9.3 204 6-213 15-240 (454)
9 PF14881 Tubulin_3: Tubulin do 100.0 8E-37 1.7E-41 254.9 10.3 168 38-216 6-179 (180)
10 PLN00220 tubulin beta chain; P 100.0 1.2E-36 2.7E-41 285.4 11.5 202 6-211 14-235 (447)
11 PTZ00010 tubulin beta chain; P 100.0 2.2E-36 4.8E-41 283.5 10.3 204 6-213 14-237 (445)
12 cd02187 beta_tubulin The tubul 100.0 4.1E-36 8.9E-41 280.4 11.0 204 6-213 13-236 (425)
13 cd02189 delta_tubulin The tubu 100.0 8.8E-35 1.9E-39 272.8 11.5 201 6-215 12-234 (446)
14 PTZ00387 epsilon tubulin; Prov 100.0 1.1E-34 2.3E-39 272.9 10.7 164 6-180 14-205 (465)
15 KOG1376|consensus 100.0 1.5E-32 3.2E-37 245.1 7.6 196 7-230 15-239 (407)
16 KOG2530|consensus 100.0 5.2E-31 1.1E-35 240.2 8.7 198 12-211 111-325 (483)
17 cd02190 epsilon_tubulin The tu 100.0 6E-31 1.3E-35 242.4 9.2 178 6-213 13-193 (379)
18 cd06059 Tubulin The tubulin su 99.9 1.7E-27 3.7E-32 219.7 9.5 182 6-213 12-196 (382)
19 PF00091 Tubulin: Tubulin/FtsZ 99.9 1.8E-27 3.8E-32 203.8 8.8 166 6-180 12-197 (216)
20 cd00286 Tubulin_FtsZ Tubulin/F 99.9 1E-25 2.2E-30 203.8 9.9 179 6-211 12-193 (328)
21 smart00864 Tubulin Tubulin/Fts 99.7 3.1E-17 6.6E-22 138.1 6.6 130 68-208 50-180 (192)
22 KOG1375|consensus 99.6 1.2E-16 2.5E-21 143.6 3.6 129 33-179 4-148 (369)
23 cd02202 FtsZ_type2 FtsZ is a G 99.5 8.1E-14 1.8E-18 127.5 7.4 91 86-180 77-170 (349)
24 cd02191 FtsZ FtsZ is a GTPase 99.3 2.5E-12 5.4E-17 115.6 5.7 120 72-208 61-181 (303)
25 TIGR00065 ftsZ cell division p 99.1 4E-11 8.7E-16 109.7 5.4 118 73-207 79-197 (349)
26 cd02201 FtsZ_type1 FtsZ is a G 99.1 9.5E-11 2.1E-15 105.4 5.8 121 72-208 61-182 (304)
27 PRK13018 cell division protein 98.8 1E-08 2.2E-13 94.7 5.7 86 87-180 98-184 (378)
28 PRK09330 cell division protein 98.7 3.3E-08 7.2E-13 91.5 6.7 85 88-180 84-169 (384)
29 COG0206 FtsZ Cell division GTP 94.1 0.18 3.9E-06 46.3 7.1 85 88-180 82-167 (338)
30 PRK14484 phosphotransferase ma 72.8 3.7 8E-05 32.3 2.9 41 89-132 42-83 (124)
31 PF03610 EIIA-man: PTS system 70.1 5.7 0.00012 30.2 3.4 31 88-118 40-70 (116)
32 PF13809 Tubulin_2: Tubulin li 68.9 18 0.00038 33.1 6.9 62 107-168 149-218 (345)
33 TIGR00824 EIIA-man PTS system, 66.1 9.4 0.0002 29.3 3.9 36 88-123 41-77 (116)
34 cd00006 PTS_IIA_man PTS_IIA, P 63.2 11 0.00023 29.0 3.7 35 88-122 40-75 (122)
35 PRK09461 ansA cytoplasmic aspa 51.0 99 0.0022 28.2 8.5 84 90-179 70-153 (335)
36 PF00710 Asparaginase: Asparag 43.6 64 0.0014 29.1 5.9 84 90-179 61-144 (313)
37 TIGR02153 gatD_arch glutamyl-t 42.6 79 0.0017 29.8 6.5 84 90-179 127-210 (404)
38 TIGR02364 dha_pts dihydroxyace 40.5 29 0.00063 27.1 2.8 29 89-118 42-71 (125)
39 PF09322 DUF1979: Domain of un 39.0 8.1 0.00018 25.9 -0.5 22 3-24 16-37 (58)
40 PRK15088 PTS system mannose-sp 36.4 45 0.00097 30.4 3.8 37 88-124 42-79 (322)
41 smart00870 Asparaginase Aspara 34.3 1E+02 0.0022 27.9 5.8 85 92-179 62-151 (323)
42 PF02187 GAS2: Growth-Arrest-S 33.4 44 0.00094 23.9 2.5 23 90-112 2-24 (73)
43 cd00411 Asparaginase Asparagin 32.3 2.5E+02 0.0055 25.4 8.0 83 90-179 67-151 (323)
44 COG2893 ManX Phosphotransferas 30.9 86 0.0019 25.1 4.2 39 91-129 45-84 (143)
45 TIGR00519 asnASE_I L-asparagin 30.3 2.5E+02 0.0054 25.6 7.6 67 90-162 66-132 (336)
46 PRK04183 glutamyl-tRNA(Gln) am 30.1 1.5E+02 0.0032 28.2 6.2 84 89-179 139-222 (419)
47 PF13544 N_methyl_2: Type IV p 26.5 34 0.00074 20.0 0.9 15 3-17 9-23 (31)
48 PF06908 DUF1273: Protein of u 25.2 1.8E+02 0.0039 24.1 5.3 81 89-179 29-110 (177)
49 PF12953 DUF3842: Domain of un 20.6 81 0.0017 25.1 2.2 24 116-139 7-31 (131)
No 1
>COG5023 Tubulin [Cytoskeleton]
Probab=100.00 E-value=1.8e-47 Score=341.22 Aligned_cols=200 Identities=21% Similarity=0.285 Sum_probs=177.4
Q ss_pred CcchhHHHHHHHHHhCCCCCCCcccCCCCcCCCCccceeccCccCccCCccccc------cccccccC------------
Q psy7545 6 NPKSFNLIQEYQHENSSQPFDCYLQDCKNYQLEESVKYWSDFMRTRYHPKSFNL------IQEYQHEN------------ 67 (235)
Q Consensus 6 ~~~~~~~~e~~~~Ehgi~p~g~~~~~~~~~~le~~~~~wsd~~~~~~~PRsl~v------i~~~~~~~------------ 67 (235)
||+|=+|||+||.||||.|+|++ +...+.+.|+..+||++...++|+||++++ |++++.++
T Consensus 14 nQiG~~fWe~~c~EHGI~~~G~~-~~~~~~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~g~y~~lf~Pen~i~ 92 (443)
T COG5023 14 NQIGNAFWETLCLEHGIGPDGTL-LDSSDEGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRNGPYGSLFHPENIIF 92 (443)
T ss_pred hHHHHHHHHHHHHhhCcCCCCCC-CCCcccccccccceeeecCCCccccceEEEecCcchHhhhccCccccccChhheee
Confidence 79999999999999999999996 777777889999999999999999999998 55555432
Q ss_pred ------CCCCCCCCcccccccccccchhhHHHHHHhhhhhcccccCeeEeeCCCCCC-chhhHhhhHHHHhhcCCcccce
Q psy7545 68 ------SSQPFDCYLQGGEVWKSELMTEDWTDKVRSFVEECDCLQGFQILSDATGGF-GGLCASSLQHLKDEYSTKSCLV 140 (235)
Q Consensus 68 ------~~~~f~~y~~G~~~~~~~~~~e~i~d~IRk~~E~CD~lqGF~i~~s~~GGt-sG~~s~lle~L~dey~k~~~~~ 140 (235)
++|+.|+|+.|+++. |+++|.|||++|.||+||||+++||++||| ||+||.|||+|++|||||.+.+
T Consensus 93 gkegAgNnwA~GhYtvG~e~~------ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~eypkK~~~t 166 (443)
T COG5023 93 GKEGAGNNWARGHYTVGKEII------DDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYPKKIKLT 166 (443)
T ss_pred ccccccccccccccchhHHHH------HHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHhcchhheeE
Confidence 467888999998775 899999999999999999999999999999 9999999999999999999999
Q ss_pred eeeeCCCCCccchhhhhhhhhhhHhhhhhcccEEEEeeCCccccccCCCCCCCCCccccchhhHHHhhhhhhhh
Q psy7545 141 FPVIPPQTLESNFKLRNVNTALFFASLSELSDVFSPLSISSDCWNQTETYRKFPYMEYNVRECIMKELNNSAYL 214 (235)
Q Consensus 141 ~~v~p~~~~~~~~~~~~yN~~Lsl~~l~e~sd~~~pl~~~~~~w~~~~~~~~~~~~~y~~~~~~~~~i~~~~~~ 214 (235)
|+|+|.++ +++++++|||++|++|.|.|+||+++.++|. ++++-......+++..|+..|++++++=.+.+.
T Consensus 167 fSV~P~p~-~Sd~VVePYNsvLt~h~l~ensD~tf~~DNe-al~di~~~~L~i~~P~y~~lN~LIs~VmSsvTt 238 (443)
T COG5023 167 FSVFPAPK-VSDVVVEPYNSVLTLHRLLENSDCTFVVDNE-ALYDICRRNLRIQNPSYDDLNQLISTVMSSVTT 238 (443)
T ss_pred EEeccCCc-cCcceecccHHHHHHHHHHhcCCceEEechH-HHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhh
Confidence 99999865 4789999999999999999999999999995 444444445567788999999999998777654
No 2
>KOG1374|consensus
Probab=100.00 E-value=3.8e-41 Score=301.04 Aligned_cols=206 Identities=18% Similarity=0.235 Sum_probs=179.1
Q ss_pred cCcchhHHHHHHHHHhCCCCCCCcccCCCCcCCCCccceeccCccCccCCccccc------cccccccCC----------
Q psy7545 5 YNPKSFNLIQEYQHENSSQPFDCYLQDCKNYQLEESVKYWSDFMRTRYHPKSFNL------IQEYQHENS---------- 68 (235)
Q Consensus 5 ~~~~~~~~~e~~~~Ehgi~p~g~~~~~~~~~~le~~~~~wsd~~~~~~~PRsl~v------i~~~~~~~~---------- 68 (235)
=||+||+||+++|.||||.|+|++ .+..+++.+...+||++..+.+|.||+|++ |+++...+.
T Consensus 14 GNQiG~efwk~L~~Ehgis~~g~l-~d~~~~~~drKdvFFyqadd~~yipRAvLvDlEPrVIn~~~~~~~s~l~n~eni~ 92 (448)
T KOG1374|consen 14 GNQIGFEFWKQLCLEHGISPDGIL-EDFATEGADRKDVFFYQADDNHYIPRAVLVDLEPRVINQILSSPYSGLYNPENIF 92 (448)
T ss_pred ccHHHHHHHHHHHHhcCCCcCCcc-cchhhhCccccccceeeccCCccccceeeeccchHHHhccccchhhcccCccceE
Confidence 389999999999999999999996 778888889999999999999999999998 444433321
Q ss_pred -----CCCCCCCcccccccccccchhhHHHHHHhhhhhcccccCeeEeeCCCCCC-chhhHhhhHHHHhhcCCcccceee
Q psy7545 69 -----SQPFDCYLQGGEVWKSELMTEDWTDKVRSFVEECDCLQGFQILSDATGGF-GGLCASSLQHLKDEYSTKSCLVFP 142 (235)
Q Consensus 69 -----~~~f~~y~~G~~~~~~~~~~e~i~d~IRk~~E~CD~lqGF~i~~s~~GGt-sG~~s~lle~L~dey~k~~~~~~~ 142 (235)
..+-++|+.|+.+ ++...|+++|.|+|++|.||+|.||+++||++||| ||+||.++|+|.|+||||.+.+++
T Consensus 93 ~s~~ggGAGNNWA~GY~~--G~~~~e~ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~drypkkliqtys 170 (448)
T KOG1374|consen 93 LSDHGGGAGNNWASGYSQ--GERVQEDIMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLNDRYPKKLVQTYS 170 (448)
T ss_pred EecCCCCccccccccccc--chhhHHHHHHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHHHHhchhhhheeee
Confidence 1244678888766 56678999999999999999999999999999999 999999999999999999999999
Q ss_pred eeCCCCCccchhhhhhhhhhhHhhhhhcccEEEEeeCCccccccCCCCCCCCCccccchhhHHHhhhhhhhh
Q psy7545 143 VIPPQTLESNFKLRNVNTALFFASLSELSDVFSPLSISSDCWNQTETYRKFPYMEYNVRECIMKELNNSAYL 214 (235)
Q Consensus 143 v~p~~~~~~~~~~~~yN~~Lsl~~l~e~sd~~~pl~~~~~~w~~~~~~~~~~~~~y~~~~~~~~~i~~~~~~ 214 (235)
|+|....+++++++|||++|+|+.|.+.+|+++.++|. ++-+-.......++..+++.|+++++|-.+.+.
T Consensus 171 VfPn~d~ssdVVVQpYNsiLtL~rL~~nsD~vVVlDN~-AL~ria~~~l~i~~ptF~~iNqLvstims~st~ 241 (448)
T KOG1374|consen 171 VFPNQDESSDVVVQPYNSILTLKRLTENSDCVVVLDNT-ALHRIAADRLHIQNPTFSQINQLVSTIMSASTT 241 (448)
T ss_pred eccCCCCccceEEecchHHHHHHHHhhCCCeEEEeccH-HHHHHHHHHhcCCCCCHHHHHHHHHHHHhhccc
Confidence 99987656899999999999999999999999999995 444444455567888999999999998766554
No 3
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=100.00 E-value=7.2e-39 Score=301.97 Aligned_cols=191 Identities=40% Similarity=0.728 Sum_probs=172.4
Q ss_pred cCCCCccceeccCccCccCCccccccccccccCCCCCCCCCcccccccccccchhhHHHHHHhhhhhcccccCeeEeeCC
Q psy7545 35 YQLEESVKYWSDFMRTRYHPKSFNLIQEYQHENSSQPFDCYLQGGEVWKSELMTEDWTDKVRSFVEECDCLQGFQILSDA 114 (235)
Q Consensus 35 ~~le~~~~~wsd~~~~~~~PRsl~vi~~~~~~~~~~~f~~y~~G~~~~~~~~~~e~i~d~IRk~~E~CD~lqGF~i~~s~ 114 (235)
++++++++|||||++..||||++.+|+++.++.....|+.|+.|.++|++.+..|+++|+||+++|+||+|||||+++|+
T Consensus 81 ~~l~~~v~~WSDy~r~~yhPrS~~~L~~~~~~~~~~~fd~fg~G~~~f~~~~~~d~~~DrIR~~vEeCD~LQGFqi~~sl 160 (493)
T cd06060 81 YNLEASVNVWSDYLYARLHPRSINVINQYNHDGTSQPFEVFGQGESLWQDESFQEEFEDRLRFYVEECDYLQGFQVLCDL 160 (493)
T ss_pred cccccchhhhhhcceeeeCCCceeeccchhcCCCCCCccccccChhhhcchhhHHHHHHHHHHHHHhCcccccEEEEEec
Confidence 56788999999999999999999999999998888899999999999998889999999999999999999999999999
Q ss_pred CCCCchhhHhhhHHHHhhcCCcccceeeeeCCCCC---ccchhhhhhhhhhhHhhhhhcccEEEEeeCCccccccCCCCC
Q psy7545 115 TGGFGGLCASSLQHLKDEYSTKSCLVFPVIPPQTL---ESNFKLRNVNTALFFASLSELSDVFSPLSISSDCWNQTETYR 191 (235)
Q Consensus 115 ~GGtsG~~s~lle~L~dey~k~~~~~~~v~p~~~~---~~~~~~~~yN~~Lsl~~l~e~sd~~~pl~~~~~~w~~~~~~~ 191 (235)
+||||||+++++|+|+|||||+.++.+++.|.... ..++++++||++|++++|.+++|+++|+.....+|+++..+.
T Consensus 161 ~gG~sG~gs~lLE~L~DEy~k~~i~~~~v~P~~~~~~~~~~~vv~~yNs~LSl~~L~e~sdl~vPl~~~~~~w~~~~~p~ 240 (493)
T cd06060 161 HDGFSGVGAKCLEHLQDEYGKASLLFPGLPPVIPPDASSDKNSIRVLNTALGLAQLSEHSSLFVPLSLSGTLWRKPGPPR 240 (493)
T ss_pred CCcccchHHHHHHHHHHhcCccceeEEEeCCCcccccccchhHHHHHHHHHHHHHHHhcCCEEEEEecccccccCCCCCC
Confidence 99999999999999999999999999999986421 125789999999999999999999999999888999988888
Q ss_pred CCCCcc------ccchhhHHHhhhhhhhhHhhhhhccccc
Q psy7545 192 KFPYME------YNVRECIMKELNNSAYLECLNRTKESLN 225 (235)
Q Consensus 192 ~~~~~~------y~~~~~~~~~i~~~~~~~~~~~~~~~~~ 225 (235)
.++++. |..++.+++-||+.++=.+|++...++.
T Consensus 241 ~~~~l~~d~~~~~htSAllA~aldT~TLp~Rl~~~~~~m~ 280 (493)
T cd06060 241 TFPYLNYDAELPYHTSALLATALDTLTLPYRLKSSPSSLS 280 (493)
T ss_pred CCcccccCCCCchHHHHHHHHHHhhccccceeccCCccHH
Confidence 888765 5566899999999998888887765443
No 4
>PLN00221 tubulin alpha chain; Provisional
Probab=100.00 E-value=6.3e-39 Score=300.79 Aligned_cols=204 Identities=20% Similarity=0.230 Sum_probs=162.8
Q ss_pred CcchhHHHHHHHHHhCCCCCCCcccCCCC--cCCCCccceeccCccCccCCccccc------cccccccCCC--------
Q psy7545 6 NPKSFNLIQEYQHENSSQPFDCYLQDCKN--YQLEESVKYWSDFMRTRYHPKSFNL------IQEYQHENSS-------- 69 (235)
Q Consensus 6 ~~~~~~~~e~~~~Ehgi~p~g~~~~~~~~--~~le~~~~~wsd~~~~~~~PRsl~v------i~~~~~~~~~-------- 69 (235)
||+|.+||+++|.||||+|+|+.. .++. +..+...+||++...++|+||+|++ |+++..++..
T Consensus 14 nQIG~~fW~~l~~Eh~i~~~g~~~-~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~~~~~lf~~~~~ 92 (450)
T PLN00221 14 IQVGNACWELYCLEHGIQPDGQMP-SDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQL 92 (450)
T ss_pred HHHHHHHHHHHHHHhCcCCCCCcc-CCccccccchhhhhheeccCCcccccchhcCCCChhhhhhhccCccccccCccce
Confidence 789999999999999999999762 2222 2345667899999999999999998 3444322110
Q ss_pred -----CCCCCCcccccccccccchhhHHHHHHhhhhhcccccCeeEeeCCCCCC-chhhHhhhHHHHhhcCCcccceeee
Q psy7545 70 -----QPFDCYLQGGEVWKSELMTEDWTDKVRSFVEECDCLQGFQILSDATGGF-GGLCASSLQHLKDEYSTKSCLVFPV 143 (235)
Q Consensus 70 -----~~f~~y~~G~~~~~~~~~~e~i~d~IRk~~E~CD~lqGF~i~~s~~GGt-sG~~s~lle~L~dey~k~~~~~~~v 143 (235)
.+-++|+.|+... +.+..|.++|+|||++|+||+||||+++||++||| ||+||+++|+|+|+|||+.+++++|
T Consensus 93 i~~~~gagNnwa~Gy~~~-g~~~~~~i~d~ir~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~~le~l~d~y~~~~~~~~~v 171 (450)
T PLN00221 93 ISGKEDAANNFARGHYTI-GKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTV 171 (450)
T ss_pred eccCCCccccccccccch-hHHHHHHHHHHHHHHHHhccCccceeEeeccCCCccchHHHHHHHHHHHhcccccceeeEe
Confidence 1223455553221 23456899999999999999999999999999999 9999999999999999999999999
Q ss_pred eCCCCCccchhhhhhhhhhhHhhhhhcccEEEEeeCCccccccCCCCCCCCCccccchhhHHHhhhhhhh
Q psy7545 144 IPPQTLESNFKLRNVNTALFFASLSELSDVFSPLSISSDCWNQTETYRKFPYMEYNVRECIMKELNNSAY 213 (235)
Q Consensus 144 ~p~~~~~~~~~~~~yN~~Lsl~~l~e~sd~~~pl~~~~~~w~~~~~~~~~~~~~y~~~~~~~~~i~~~~~ 213 (235)
+|+... +++++++||++|++++|.+++|+++|++|. .+.+.......++...|+..|.++|+.=.+.+
T Consensus 172 ~P~~~~-~~~vv~~YN~~Lsl~~l~e~~d~~~~~dN~-al~~~~~~~~~~~~p~~~dlN~lIa~~is~~T 239 (450)
T PLN00221 172 YPSPQV-STAVVEPYNSVLSTHSLLEHTDVAVLLDNE-AIYDICRRSLDIERPTYTNLNRLISQVISSLT 239 (450)
T ss_pred eCCCcC-CCCchhhhHHHHhHHHHHhhCceeeecchH-HHHHHHHhhcCCCCCCHHHHHHHHhhhccccc
Confidence 998643 568999999999999999999999999995 34444344455677899999999998766555
No 5
>PTZ00335 tubulin alpha chain; Provisional
Probab=100.00 E-value=1.2e-37 Score=291.90 Aligned_cols=199 Identities=21% Similarity=0.250 Sum_probs=160.6
Q ss_pred CcchhHHHHHHHHHhCCCCCCCcccCCCC--cCCCCccceeccCccCccCCccccc------cccccccC----------
Q psy7545 6 NPKSFNLIQEYQHENSSQPFDCYLQDCKN--YQLEESVKYWSDFMRTRYHPKSFNL------IQEYQHEN---------- 67 (235)
Q Consensus 6 ~~~~~~~~e~~~~Ehgi~p~g~~~~~~~~--~~le~~~~~wsd~~~~~~~PRsl~v------i~~~~~~~---------- 67 (235)
|++|.+||+++|.||||+|+|.+ ...+. +..+...+||++...++|+||+|++ |+++..++
T Consensus 14 nqiG~~fW~~~~~Eh~i~~~g~~-~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~~~~~l~~~~~~ 92 (448)
T PTZ00335 14 IQVGNACWELFCLEHGIQPDGQM-PSDKNIGVEDDAFNTFFSETGAGKHVPRCVFLDLEPTVIDEVRTGTYRQLFHPEQL 92 (448)
T ss_pred HHHHHHHHHHHHHHhCcCCCCCc-cCCCcccccchhhcceeEEcCCCccccccccccCCcchhhhcccCccccccCchhe
Confidence 78999999999999999999976 22222 2345667899999999999999998 34443221
Q ss_pred --------CCCCCCCCcccccccccccchhhHHHHHHhhhhhcccccCeeEeeCCCCCC-chhhHhhhHHHHhhcCCccc
Q psy7545 68 --------SSQPFDCYLQGGEVWKSELMTEDWTDKVRSFVEECDCLQGFQILSDATGGF-GGLCASSLQHLKDEYSTKSC 138 (235)
Q Consensus 68 --------~~~~f~~y~~G~~~~~~~~~~e~i~d~IRk~~E~CD~lqGF~i~~s~~GGt-sG~~s~lle~L~dey~k~~~ 138 (235)
++|+.|.|..|. +..|+++|+|||++|+||++|||+++||++||| ||+|+.++|+|+|+|||+++
T Consensus 93 i~~~~gagnnwa~Gy~~~G~------~~~d~i~d~ir~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l~d~yp~~~~ 166 (448)
T PTZ00335 93 ISGKEDAANNFARGHYTIGK------EIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSK 166 (448)
T ss_pred eecCCCCCCcccccccchhh------hHhHHHHHHHHHhHHhccCccceeEeeccCCCccchHHHHHHHHHHHhccccce
Confidence 234444444443 456899999999999999999999999999999 99999999999999999999
Q ss_pred ceeeeeCCCCCccchhhhhhhhhhhHhhhhhcccEEEEeeCCccccccCCCCCCCCCccccchhhHHHhhhhhhh
Q psy7545 139 LVFPVIPPQTLESNFKLRNVNTALFFASLSELSDVFSPLSISSDCWNQTETYRKFPYMEYNVRECIMKELNNSAY 213 (235)
Q Consensus 139 ~~~~v~p~~~~~~~~~~~~yN~~Lsl~~l~e~sd~~~pl~~~~~~w~~~~~~~~~~~~~y~~~~~~~~~i~~~~~ 213 (235)
++++|+|+... ++.++++||++|++++|.+++|++++++|. .+.+.......+....|+..|.++++.-...+
T Consensus 167 ~~~~v~P~~~~-~~~~v~~YN~~Lsl~~L~e~~d~~~~~dN~-al~~i~~~~~~~~~~~~~~~N~~Ia~~is~~t 239 (448)
T PTZ00335 167 LGFTIYPSPQV-STAVVEPYNSVLSTHSLLEHTDVAVMLDNE-AIYDICRRNLDIERPTYTNLNRLIAQVISSLT 239 (448)
T ss_pred eeEEecCCCCC-CCcceeehHHHHhHHHHHhhCCeeeeechH-HHHHHHHHhcCCCCCCHHHHHHHHHhhhcccc
Confidence 99999998642 578999999999999999999999999995 33332222334566789999999998777655
No 6
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=100.00 E-value=2e-37 Score=289.23 Aligned_cols=205 Identities=16% Similarity=0.209 Sum_probs=165.1
Q ss_pred CcchhHHHHHHHHHhCCCCCCCcccCCCCcCCCCccceeccCccCccCCccccc------cccccccCCC----------
Q psy7545 6 NPKSFNLIQEYQHENSSQPFDCYLQDCKNYQLEESVKYWSDFMRTRYHPKSFNL------IQEYQHENSS---------- 69 (235)
Q Consensus 6 ~~~~~~~~e~~~~Ehgi~p~g~~~~~~~~~~le~~~~~wsd~~~~~~~PRsl~v------i~~~~~~~~~---------- 69 (235)
||+|.+|||++|.||||+|+|.. ..+.+...+...+||++...++|+||+|++ |+++..++..
T Consensus 13 nqIG~~~We~l~~eh~~~~~g~~-~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~Ep~vi~~i~~~~~~~lf~~~~~~~ 91 (431)
T cd02188 13 NQIGSEFWKQLCAEHGISPDGIL-EDFATDGGDRKDVFFYQADDEHYVPRAILIDLEPRVINSIQNSEYRNLYNPENIFL 91 (431)
T ss_pred hHHHHHHHHHHHHHhCCCCCCCc-CCCccccccccceeEEECCCCccCCcceeccCCcchhhhhhcCccccccCccceEe
Confidence 68999999999999999999976 333333446677899999999999999998 4444332211
Q ss_pred -----CCCCCCcccccccccccchhhHHHHHHhhhhhcccccCeeEeeCCCCCC-chhhHhhhHHHHhhcCCcccceeee
Q psy7545 70 -----QPFDCYLQGGEVWKSELMTEDWTDKVRSFVEECDCLQGFQILSDATGGF-GGLCASSLQHLKDEYSTKSCLVFPV 143 (235)
Q Consensus 70 -----~~f~~y~~G~~~~~~~~~~e~i~d~IRk~~E~CD~lqGF~i~~s~~GGt-sG~~s~lle~L~dey~k~~~~~~~v 143 (235)
.+-++|+.|+.. +.+..|+++|+|||++|+||++|||+++||++||| ||+|+.|+|+|+|+|||+.+++++|
T Consensus 92 ~~~~~gagnnwa~Gy~~--g~~~~d~i~d~ir~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d~y~~~~~~~~~V 169 (431)
T cd02188 92 SKHGGGAGNNWASGYSQ--GEEVQEEILDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDRYPKKLIQTYSV 169 (431)
T ss_pred eccCCCccccHHHHHHH--HHHHHHHHHHHHHHHHhcCCCcceeEEEecCCCCcchhHHHHHHHHHHhHcCcceeeeEEe
Confidence 233567777442 45778999999999999999999999999999999 8999999999999999999999999
Q ss_pred eCCCCCccchhhhhhhhhhhHhhhhhcccEEEEeeCCccccccCCCCCCCCCccccchhhHHHhhhhhhhh
Q psy7545 144 IPPQTLESNFKLRNVNTALFFASLSELSDVFSPLSISSDCWNQTETYRKFPYMEYNVRECIMKELNNSAYL 214 (235)
Q Consensus 144 ~p~~~~~~~~~~~~yN~~Lsl~~l~e~sd~~~pl~~~~~~w~~~~~~~~~~~~~y~~~~~~~~~i~~~~~~ 214 (235)
+|+....+++++++||++|++++|.+++|++++++|. .+.+.......++...|+..|.++|+.-.+.+.
T Consensus 170 ~P~~~~~s~~~v~~YN~~lsl~~l~e~~d~~~~~dN~-al~~i~~~~l~~~~~~~~~~N~~ia~~ls~~t~ 239 (431)
T cd02188 170 FPNQDESSDVVVQPYNSILTLKRLILNADCVVVLDNT-ALNRIATDRLHIQNPTFDQINSLVSTVMSASTT 239 (431)
T ss_pred cCCCccCCCccceecHHHHHHHHHHHhCCeeeecchH-HHHHHHHHhcCCCCCCHHHHHHHHhccCCCccc
Confidence 9975432467899999999999999999999999994 232222233445667899999999887755443
No 7
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=100.00 E-value=6.5e-37 Score=286.32 Aligned_cols=204 Identities=20% Similarity=0.223 Sum_probs=158.6
Q ss_pred CcchhHHHHHHHHHhCCCCCCCcccCCCC--cCCCCccceeccCccCccCCccccc------cccccccC-------CC-
Q psy7545 6 NPKSFNLIQEYQHENSSQPFDCYLQDCKN--YQLEESVKYWSDFMRTRYHPKSFNL------IQEYQHEN-------SS- 69 (235)
Q Consensus 6 ~~~~~~~~e~~~~Ehgi~p~g~~~~~~~~--~~le~~~~~wsd~~~~~~~PRsl~v------i~~~~~~~-------~~- 69 (235)
||+|.+|||++|.||||+|+|+. ..+++ ...+...+||++...++|+||+|++ |+++..+. .+
T Consensus 13 nqiG~~~w~~l~~Eh~~~~~g~~-~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~~i~~i~~~~~~~l~~~~~~ 91 (434)
T cd02186 13 IQIGNACWELYCLEHGIQPDGQM-PSDKTIGGGDDAFNTFFSETGSGKHVPRAVFIDLEPTVIDEVRTGTYRQLFHPEQL 91 (434)
T ss_pred hHHHHHHHHHHHHHhCcCCCCCc-cCCccccccccccceEEEECCCCcCcccccccCCcHHHHHhhccCccccccCccce
Confidence 78999999999999999999976 33322 3456778999999999999999998 33332211 00
Q ss_pred -----CCCCCCcccccccccccchhhHHHHHHhhhhhcccccCeeEeeCCCCCC-chhhHhhhHHHHhhcCCcccceeee
Q psy7545 70 -----QPFDCYLQGGEVWKSELMTEDWTDKVRSFVEECDCLQGFQILSDATGGF-GGLCASSLQHLKDEYSTKSCLVFPV 143 (235)
Q Consensus 70 -----~~f~~y~~G~~~~~~~~~~e~i~d~IRk~~E~CD~lqGF~i~~s~~GGt-sG~~s~lle~L~dey~k~~~~~~~v 143 (235)
.+-++|+.|.... +.+..|+++|+|||++|+||++|||+++||++||| ||+|+.++|+|+|+|||+++.+++|
T Consensus 92 ~~~~~g~gnnwa~Gy~~~-G~~~~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGTGSGlgs~l~e~l~d~y~~~~~~~~~v 170 (434)
T cd02186 92 ISGKEDAANNFARGHYTI-GKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDYGKKSKLEFTV 170 (434)
T ss_pred eecCCCCCcccccccchh-HHHHHHHHHHHHHHHHhcCCCcceeEEEeccCCCcchhHHHHHHHHHHHhcCccceeeEEE
Confidence 1123444443222 23456899999999999999999999999999999 9999999999999999999999999
Q ss_pred eCCCCCccchhhhhhhhhhhHhhhhhcccEEEEeeCCccccccCCCCCCCCCccccchhhHHHhhhhhhh
Q psy7545 144 IPPQTLESNFKLRNVNTALFFASLSELSDVFSPLSISSDCWNQTETYRKFPYMEYNVRECIMKELNNSAY 213 (235)
Q Consensus 144 ~p~~~~~~~~~~~~yN~~Lsl~~l~e~sd~~~pl~~~~~~w~~~~~~~~~~~~~y~~~~~~~~~i~~~~~ 213 (235)
+|+... ++.++++||++|++++|.+++|++++++|. .+.+.......++...|+..|.++++.-...+
T Consensus 171 ~P~~~~-~~~~v~~YN~~lsl~~l~e~~d~~~~~dN~-al~~~~~~~~~~~~~~~~~lN~iIa~~l~~~t 238 (434)
T cd02186 171 YPSPQV-STAVVEPYNSVLTTHSLLEHSDCSFMVDNE-AIYDICRRNLDIERPTYTNLNRLIAQVVSSIT 238 (434)
T ss_pred eCCCCC-CCCeeeehHHHHhHHHHHhhCCeeeeeccH-HHHHHHHhhcCCCCCCHHHHHHHHHHHhhccc
Confidence 998643 467999999999999999999999999994 22222222233456688888888887766554
No 8
>PLN00222 tubulin gamma chain; Provisional
Probab=100.00 E-value=3.7e-37 Score=289.04 Aligned_cols=204 Identities=17% Similarity=0.221 Sum_probs=167.0
Q ss_pred CcchhHHHHHHHHHhCCCCCCCcccCCCCcCCCCccceeccCccCccCCccccc------cccccccCCC----------
Q psy7545 6 NPKSFNLIQEYQHENSSQPFDCYLQDCKNYQLEESVKYWSDFMRTRYHPKSFNL------IQEYQHENSS---------- 69 (235)
Q Consensus 6 ~~~~~~~~e~~~~Ehgi~p~g~~~~~~~~~~le~~~~~wsd~~~~~~~PRsl~v------i~~~~~~~~~---------- 69 (235)
||+|.+|||++|+||||+++|.+ ..+++.+.+...+||++...++|+||+|++ |+++..++..
T Consensus 15 nqiG~~~w~~l~~Eh~i~~~g~~-~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~vi~~i~~~~~~~lf~~~~~~~ 93 (454)
T PLN00222 15 NQIGMEFWKQLCLEHGISKDGIL-EDFATQGGDRKDVFFYQADDEHYIPRALLIDLEPRVINGIQNSEYRNLYNHENIFV 93 (454)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCc-cCccccccccccceeEEcCCCcccceeeecCCCcchhhhhccCccccccCccceee
Confidence 68999999999999999999986 444444456778899999999999999998 4444332210
Q ss_pred -----CCCCCCcccccccccccchhhHHHHHHhhhhhcccccCeeEeeCCCCCC-chhhHhhhHHHHhhcCCcccceeee
Q psy7545 70 -----QPFDCYLQGGEVWKSELMTEDWTDKVRSFVEECDCLQGFQILSDATGGF-GGLCASSLQHLKDEYSTKSCLVFPV 143 (235)
Q Consensus 70 -----~~f~~y~~G~~~~~~~~~~e~i~d~IRk~~E~CD~lqGF~i~~s~~GGt-sG~~s~lle~L~dey~k~~~~~~~v 143 (235)
.+-++|+.|+. .+.+..|.++|+|||++|.||++|||+++||++||| ||+|+.++|+|+|+|||+.+++++|
T Consensus 94 ~~~~~gagnn~a~Gy~--~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~sl~GGTGSGlgs~lle~L~d~y~~~~~~~~~v 171 (454)
T PLN00222 94 SDHGGGAGNNWASGYH--QGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSV 171 (454)
T ss_pred cccCCCcccchHHhHH--HHHHHHHHHHHHHHHHHHhCCCccceEEeecCCCCccchHHHHHHHHHHhhcCCcceeeEEe
Confidence 14456777743 245778999999999999999999999999999999 8999999999999999999999999
Q ss_pred eCCCCCccchhhhhhhhhhhHhhhhhcccEEEEeeCCccccccCCCCCCCCCccccchhhHHHhhhhhhh
Q psy7545 144 IPPQTLESNFKLRNVNTALFFASLSELSDVFSPLSISSDCWNQTETYRKFPYMEYNVRECIMKELNNSAY 213 (235)
Q Consensus 144 ~p~~~~~~~~~~~~yN~~Lsl~~l~e~sd~~~pl~~~~~~w~~~~~~~~~~~~~y~~~~~~~~~i~~~~~ 213 (235)
+|+....+++++++||++|++++|.+++|++++++|. .+.+.......++...|+..|.++|+.-.+.+
T Consensus 172 ~P~~~~~~~~vv~~YN~~lsl~~l~~~~D~~~~~dN~-al~~ic~~~l~i~~p~~~dlN~lIA~~ls~~T 240 (454)
T PLN00222 172 FPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNT-ALNRIAVDRLHLENPTFAQTNSLVSTVMSAST 240 (454)
T ss_pred cCCCcccCCceeeecHHHHhHHHHHhcCCeeeEecHH-HHHHHHHHhcCCCCCCHHHHHHHhccccCCcc
Confidence 9975323568899999999999999999999999994 33333333445677899999999998876655
No 9
>PF14881 Tubulin_3: Tubulin domain
Probab=100.00 E-value=8e-37 Score=254.87 Aligned_cols=168 Identities=38% Similarity=0.676 Sum_probs=143.1
Q ss_pred CCccceeccCccCccCCccccccccccccCCCCCCCCCcccccccccccchhhHHHH-HHhhhhhcccccCeeEeeCCCC
Q psy7545 38 EESVKYWSDFMRTRYHPKSFNLIQEYQHENSSQPFDCYLQGGEVWKSELMTEDWTDK-VRSFVEECDCLQGFQILSDATG 116 (235)
Q Consensus 38 e~~~~~wsd~~~~~~~PRsl~vi~~~~~~~~~~~f~~y~~G~~~~~~~~~~e~i~d~-IRk~~E~CD~lqGF~i~~s~~G 116 (235)
.+.++|||||++.+||||+++.|+++.++....+|+.|+.|.++|++.+..++++|+ ||+++||||.|||||++.++++
T Consensus 6 ~~~vryWSDy~r~~yhPrSl~~l~~~~~~~~~~~Fd~f~~G~~~f~~~~~~~d~~D~~lR~f~EECD~lQGfQ~~~d~d~ 85 (180)
T PF14881_consen 6 PSNVRYWSDYNRVHYHPRSLNQLNDYEHNSPNMPFDTFGVGQELFKSLDYEEDFFDRDLRFFLEECDSLQGFQVLTDVDD 85 (180)
T ss_pred CCCCEECCCCCcceeCCCceEEcCccccCCCCCCcccccchHHHHhhhhhhhHHHHHHHHHHHHHcccccceEEEecCCC
Confidence 467999999999999999999999998877788999999999999987777777765 9999999999999999999999
Q ss_pred CCchhhHhhhHHHHhhcCCccc-ceeeeeCCCCCcc----chhhhhhhhhhhHhhhhhcccEEEEeeCCccccccCCCCC
Q psy7545 117 GFGGLCASSLQHLKDEYSTKSC-LVFPVIPPQTLES----NFKLRNVNTALFFASLSELSDVFSPLSISSDCWNQTETYR 191 (235)
Q Consensus 117 GtsG~~s~lle~L~dey~k~~~-~~~~v~p~~~~~~----~~~~~~yN~~Lsl~~l~e~sd~~~pl~~~~~~w~~~~~~~ 191 (235)
|||||++.+||+|+|||||+.+ +.+++.++..... ....+.+|.++++.+|.++|++++||....
T Consensus 86 gwgGfas~~Le~L~DEy~k~~i~~~~~~~~~~~~~~~~~~~~~~~~~N~a~s~~~L~~~ssl~vPl~~~~---------- 155 (180)
T PF14881_consen 86 GWGGFASSLLEHLRDEYPKKPIIWVWGLRDPSSSSRDAPRKRRLRLLNKALSLSELSEQSSLFVPLSTLS---------- 155 (180)
T ss_pred chHhHHHHHHHHHHHHcCCCceEEeecCCCccccccchhhHHHHHHHHHHHHHHHHHhhCCEEEecCCCC----------
Confidence 9999999999999999999996 6777765432111 234567899999999999999999998421
Q ss_pred CCCCccccchhhHHHhhhhhhhhHh
Q psy7545 192 KFPYMEYNVRECIMKELNNSAYLEC 216 (235)
Q Consensus 192 ~~~~~~y~~~~~~~~~i~~~~~~~~ 216 (235)
=....|..++.+++.||+.|+=.+
T Consensus 156 -d~~s~~htSai~A~aidT~TLp~R 179 (180)
T PF14881_consen 156 -DASSNWHTSAILAAAIDTITLPYR 179 (180)
T ss_pred -cCCCcHHHHHHHHHHHHhccccCC
Confidence 125688999999999999886443
No 10
>PLN00220 tubulin beta chain; Provisional
Probab=100.00 E-value=1.2e-36 Score=285.43 Aligned_cols=202 Identities=20% Similarity=0.311 Sum_probs=159.3
Q ss_pred CcchhHHHHHHHHHhCCCCCCCcccCCCCcCCCCccceeccCccCccCCccccc------cccccccCC-------C---
Q psy7545 6 NPKSFNLIQEYQHENSSQPFDCYLQDCKNYQLEESVKYWSDFMRTRYHPKSFNL------IQEYQHENS-------S--- 69 (235)
Q Consensus 6 ~~~~~~~~e~~~~Ehgi~p~g~~~~~~~~~~le~~~~~wsd~~~~~~~PRsl~v------i~~~~~~~~-------~--- 69 (235)
|++|..|||++|+||+|+++|++ ...++...+....||.+...++|+||+|++ |+++..++. +
T Consensus 14 nqiG~~~w~~l~~eh~~~~~g~~-~~~~~~~~~~~~~~f~e~~~~~~~pRav~iD~e~~~i~~i~~~~~~~~~~~~~~~~ 92 (447)
T PLN00220 14 NQIGAKFWEVVCDEHGIDPTGTY-HGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVF 92 (447)
T ss_pred hHHHHHHHHHHHHHhCCCCCCCc-CCCcccccccccceeccCCCCcccceeEecCCcHHHHHHHhcCccccccCccceEe
Confidence 68999999999999999999886 444454446677899999999999999998 333322111 1
Q ss_pred ---CCCCCCcccccccccccchhhHHHHHHhhhhhcccccCeeEeeCCCCCC-chhhHhhhHHHHhhcCCcccceeeeeC
Q psy7545 70 ---QPFDCYLQGGEVWKSELMTEDWTDKVRSFVEECDCLQGFQILSDATGGF-GGLCASSLQHLKDEYSTKSCLVFPVIP 145 (235)
Q Consensus 70 ---~~f~~y~~G~~~~~~~~~~e~i~d~IRk~~E~CD~lqGF~i~~s~~GGt-sG~~s~lle~L~dey~k~~~~~~~v~p 145 (235)
.+-++|+.|+.. .+.+..|.++|+|||++|+||++|||++++|++||| ||+|+.++++|+|+|||+.+++++|+|
T Consensus 93 ~~~gagnnwa~G~~~-~g~~~~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~~y~~~~~~~~~v~P 171 (447)
T PLN00220 93 GQSGAGNNWAKGHYT-EGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFP 171 (447)
T ss_pred cccCCCCccCceeec-ccHHHHHHHHHHHHHHHHhCcCcCceEEEEecCCCccccHHHHHHHHHHHhccccceeeeEEEC
Confidence 122344444322 233456899999999999999999999999999999 999999999999999999999999999
Q ss_pred CCCCccchhhhhhhhhhhHhhhhhcccEEEEeeCCccccccCCCCCCCCCccccchhhHHHhhhhh
Q psy7545 146 PQTLESNFKLRNVNTALFFASLSELSDVFSPLSISSDCWNQTETYRKFPYMEYNVRECIMKELNNS 211 (235)
Q Consensus 146 ~~~~~~~~~~~~yN~~Lsl~~l~e~sd~~~pl~~~~~~w~~~~~~~~~~~~~y~~~~~~~~~i~~~ 211 (235)
++. .++.++++||++|++++|.+++|++++++|. .+.+.......+....|++.|.++++.=.+
T Consensus 172 ~~~-~~~~~v~~yN~~lsl~~l~~~~d~~i~~dN~-aL~~i~~~~~~i~~~sf~~~N~lIa~~is~ 235 (447)
T PLN00220 172 SPK-VSDTVVEPYNATLSVHQLVENADECMVLDNE-ALYDICFRTLKLTTPSFGDLNHLISATMSG 235 (447)
T ss_pred CCc-CCCCccchhHHHHhHHHHHhcCCceEEeehH-HHHHHHHHhhcCCCCChHHHHhHhhccccc
Confidence 764 3678999999999999999999999999995 233222222345567899999998866554
No 11
>PTZ00010 tubulin beta chain; Provisional
Probab=100.00 E-value=2.2e-36 Score=283.48 Aligned_cols=204 Identities=21% Similarity=0.322 Sum_probs=162.4
Q ss_pred CcchhHHHHHHHHHhCCCCCCCcccCCCCcCCCCccceeccCccCccCCccccc------cccccccC-------CC---
Q psy7545 6 NPKSFNLIQEYQHENSSQPFDCYLQDCKNYQLEESVKYWSDFMRTRYHPKSFNL------IQEYQHEN-------SS--- 69 (235)
Q Consensus 6 ~~~~~~~~e~~~~Ehgi~p~g~~~~~~~~~~le~~~~~wsd~~~~~~~PRsl~v------i~~~~~~~-------~~--- 69 (235)
||+|.+|||++|.||||+|+|++ ..+++...+...+||++...++|+||+|++ |+++..++ .+
T Consensus 14 nqiG~~~we~l~~eh~~~~~g~~-~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~vi~~i~~~~~~~lf~~~~~~~ 92 (445)
T PTZ00010 14 NQIGSKFWEVISDEHGIDPTGTY-QGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPYGQLFRPDNFIF 92 (445)
T ss_pred hHHHHHHHHHHHHHhCCCCCCCC-CCCCcccccccceeecccCCCceEEeeeeccCChhhhhhhcccchhhhcCccceee
Confidence 68999999999999999999976 333344445667899999999999999998 33332221 11
Q ss_pred ---CCCCCCcccccccccccchhhHHHHHHhhhhhcccccCeeEeeCCCCCC-chhhHhhhHHHHhhcCCcccceeeeeC
Q psy7545 70 ---QPFDCYLQGGEVWKSELMTEDWTDKVRSFVEECDCLQGFQILSDATGGF-GGLCASSLQHLKDEYSTKSCLVFPVIP 145 (235)
Q Consensus 70 ---~~f~~y~~G~~~~~~~~~~e~i~d~IRk~~E~CD~lqGF~i~~s~~GGt-sG~~s~lle~L~dey~k~~~~~~~v~p 145 (235)
.+-++|+.|... .+.+..++++|+|||++|+||++|||+++||++||| ||+|++++|+|+|||||+.+++++|+|
T Consensus 93 ~~~gagNnwa~G~~~-~g~~~~~~i~d~irk~~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~e~L~dey~~~~~~~~~v~P 171 (445)
T PTZ00010 93 GQSGAGNNWAKGHYT-EGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREEYPDRIMMTFSVFP 171 (445)
T ss_pred cccCCccccccchhh-hhHHHHHHHHHHHhhhhhhccCccceEEEeccCCCccccHHHHHHHHHHhhCCccceeeeEecC
Confidence 122344444322 133456899999999999999999999999999999 899999999999999999999999999
Q ss_pred CCCCccchhhhhhhhhhhHhhhhhcccEEEEeeCCccccccCCCCCCCCCccccchhhHHHhhhhhhh
Q psy7545 146 PQTLESNFKLRNVNTALFFASLSELSDVFSPLSISSDCWNQTETYRKFPYMEYNVRECIMKELNNSAY 213 (235)
Q Consensus 146 ~~~~~~~~~~~~yN~~Lsl~~l~e~sd~~~pl~~~~~~w~~~~~~~~~~~~~y~~~~~~~~~i~~~~~ 213 (235)
+... ++.++++||++|++++|.+++|.+++++|. .+.+.......++...|+..|.++|+.=.+.+
T Consensus 172 ~~~~-~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~-al~~i~~~~l~~~~p~~~~lN~lIaq~is~~t 237 (445)
T PTZ00010 172 SPKV-SDTVVEPYNATLSVHQLVENADESMCIDNE-ALYDICFRTLKLTTPTYGDLNHLVSAVMSGVT 237 (445)
T ss_pred Cccc-CccchhhhHHHHhHHHHHhcCCceeeeccH-HHHHHHHHhccCCCCCHHHHHHHHHhhccccc
Confidence 8643 578999999999999999999999999995 33333334445667899999999998876555
No 12
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=100.00 E-value=4.1e-36 Score=280.35 Aligned_cols=204 Identities=20% Similarity=0.305 Sum_probs=159.5
Q ss_pred CcchhHHHHHHHHHhCCCCCCCcccCCCCcCCCCccceeccCccCccCCccccc------cccccccC-------CC---
Q psy7545 6 NPKSFNLIQEYQHENSSQPFDCYLQDCKNYQLEESVKYWSDFMRTRYHPKSFNL------IQEYQHEN-------SS--- 69 (235)
Q Consensus 6 ~~~~~~~~e~~~~Ehgi~p~g~~~~~~~~~~le~~~~~wsd~~~~~~~PRsl~v------i~~~~~~~-------~~--- 69 (235)
||+|.+|||++|.||||+|+|.+ ...++...+...+||++...++|+||+|++ |+++..++ .+
T Consensus 13 nqiG~~~w~~l~~eh~~~~~g~~-~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~~~~~l~~~~~~~~ 91 (425)
T cd02187 13 NQIGAKFWEVISDEHGLDPTGTY-KGDSDLQLERINVYFNEASGGKYVPRAILVDLEPGTMDSVRSGPFGQLFRPDNFVF 91 (425)
T ss_pred hHHHHHHHHHHHHHcCCCCCCCc-cCCccccccccceeEEecCCCceeeeeeeccCChhhhhhhhcCcccceecCcceee
Confidence 78999999999999999999875 333443345667899999999999999998 33332221 11
Q ss_pred ---CCCCCCcccccccccccchhhHHHHHHhhhhhcccccCeeEeeCCCCCC-chhhHhhhHHHHhhcCCcccceeeeeC
Q psy7545 70 ---QPFDCYLQGGEVWKSELMTEDWTDKVRSFVEECDCLQGFQILSDATGGF-GGLCASSLQHLKDEYSTKSCLVFPVIP 145 (235)
Q Consensus 70 ---~~f~~y~~G~~~~~~~~~~e~i~d~IRk~~E~CD~lqGF~i~~s~~GGt-sG~~s~lle~L~dey~k~~~~~~~v~p 145 (235)
.+-++|+.|... .+.+..|+++|+||+++|+||++|||+++||++||| ||+|+.++|+|+|||||+.+++++|+|
T Consensus 92 ~~~gagnnwa~G~~~-~G~~~~e~i~d~ir~~~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e~l~d~y~~~~~~~~~V~P 170 (425)
T cd02187 92 GQSGAGNNWAKGHYT-EGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMATFSVFP 170 (425)
T ss_pred ccCCCCCccCccchh-hcHHHHHHHHHHHHHhhccCCCcceEEEEeecCCCccccHHHHHHHHHHHhcCCcceEEEEEec
Confidence 112334444322 123456899999999999999999999999999999 899999999999999999999999999
Q ss_pred CCCCccchhhhhhhhhhhHhhhhhcccEEEEeeCCccccccCCCCCCCCCccccchhhHHHhhhhhhh
Q psy7545 146 PQTLESNFKLRNVNTALFFASLSELSDVFSPLSISSDCWNQTETYRKFPYMEYNVRECIMKELNNSAY 213 (235)
Q Consensus 146 ~~~~~~~~~~~~yN~~Lsl~~l~e~sd~~~pl~~~~~~w~~~~~~~~~~~~~y~~~~~~~~~i~~~~~ 213 (235)
+... ++.++++||++|++++|.+++|++++++|. .+.+.......+....|+..|.++|++=.+.+
T Consensus 171 ~~~~-~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~-al~~i~~~~~~~~~~~~~~~N~~ia~~is~~t 236 (425)
T cd02187 171 SPKV-SDTVVEPYNATLSVHQLVENSDETFCIDNE-ALYDICFRTLKLTNPTYGDLNHLVSAVMSGIT 236 (425)
T ss_pred CCCc-CcceeeehHHHHHHHHHHhcCCeEEEeecH-HHHHHHHHhcCCCCCCHHHHHHHHhccccccc
Confidence 7642 578999999999999999999999999994 23332223334566789999998888765554
No 13
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=100.00 E-value=8.8e-35 Score=272.80 Aligned_cols=201 Identities=23% Similarity=0.290 Sum_probs=161.9
Q ss_pred CcchhHHHHHHHHHhCCCCCCCcccCCCCcCCCCccceeccCccCccCCccccc------cccccccC---------CC-
Q psy7545 6 NPKSFNLIQEYQHENSSQPFDCYLQDCKNYQLEESVKYWSDFMRTRYHPKSFNL------IQEYQHEN---------SS- 69 (235)
Q Consensus 6 ~~~~~~~~e~~~~Ehgi~p~g~~~~~~~~~~le~~~~~wsd~~~~~~~PRsl~v------i~~~~~~~---------~~- 69 (235)
||+|.+||+++|.||+++++|.+. ...+...+||++....+|+||+|++ |+++..+. .+
T Consensus 12 NQIG~~fw~~l~~Eh~~~~~g~~~-----~~~~~~~~ff~e~~~~~~~pRav~iD~ep~vi~~i~~~~~~~~~~f~~~~~ 86 (446)
T cd02189 12 NQLGHELFDTLAKEASSSDDEGYK-----YERDAQERFFSEKSDGQPIARSVLVDMEPKVIESTLSKSSGGTWKYDKKNV 86 (446)
T ss_pred hHHHHHHHHHHHHHhCCCCCCCcc-----ccccccceeecccCCCCcCCceeecCCCchHHHHhhcCCCCcccccCchhe
Confidence 799999999999999999988752 2345667899999999999999998 33333221 11
Q ss_pred -----CCCCCCcccccccccccchhhHHHHHHhhhhhcccccCeeEeeCCCCCC-chhhHhhhHHHHhhcCCcccceeee
Q psy7545 70 -----QPFDCYLQGGEVWKSELMTEDWTDKVRSFVEECDCLQGFQILSDATGGF-GGLCASSLQHLKDEYSTKSCLVFPV 143 (235)
Q Consensus 70 -----~~f~~y~~G~~~~~~~~~~e~i~d~IRk~~E~CD~lqGF~i~~s~~GGt-sG~~s~lle~L~dey~k~~~~~~~v 143 (235)
.+-++|+.|+... +.++.|+++|+|||++|+||++|||+++||++||| ||+|+.++|+|+|+||++.+++++|
T Consensus 87 ~~~~~gagnnwa~Gy~~~-g~~~~~~~~d~ir~~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y~~~~~~~~~v 165 (446)
T cd02189 87 ICQQSGSGNNWAYGYYVH-GPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYPESLLLNIVV 165 (446)
T ss_pred eecCCCCccchhcccccc-chhhHHHHHHHHHHHHHhCCCccceEEEecCCCCcchHHHHHHHHHHHHhcCccceeeeec
Confidence 1224555554332 34567999999999999999999999999999999 8999999999999999999999999
Q ss_pred eCCCCCccchhhhhhhhhhhHhhhhhcccEEEEeeCCccccccCCCCCCCCCccccchhhHHHhhhhhhhhH
Q psy7545 144 IPPQTLESNFKLRNVNTALFFASLSELSDVFSPLSISSDCWNQTETYRKFPYMEYNVRECIMKELNNSAYLE 215 (235)
Q Consensus 144 ~p~~~~~~~~~~~~yN~~Lsl~~l~e~sd~~~pl~~~~~~w~~~~~~~~~~~~~y~~~~~~~~~i~~~~~~~ 215 (235)
+|+. .++.++++||++|+++.|.+++|++++++|. .+.+........+...|+..|.++++.-...+.+
T Consensus 166 ~P~~--~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~-al~~~~~~~~~~~~~~~~~~N~~Ia~~l~~~~~~ 234 (446)
T cd02189 166 WPYT--TGEVIVQNYNTVLTLAHLYESSDAIILLEND-DIHRICSKLRNLKNVSLSDINKVIAHQLASLLQP 234 (446)
T ss_pred cCCC--CCcchhhhhhHHhhHHHHHhhCCeEEEecHH-HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhH
Confidence 9964 3678999999999999999999999999995 2322222333456679999999999888777654
No 14
>PTZ00387 epsilon tubulin; Provisional
Probab=100.00 E-value=1.1e-34 Score=272.91 Aligned_cols=164 Identities=18% Similarity=0.250 Sum_probs=133.6
Q ss_pred CcchhHHHHHHHHHhC-CCCCCCcccCCCCcCCCCccceeccCcc-------CccCCccccc------cccccccCC---
Q psy7545 6 NPKSFNLIQEYQHENS-SQPFDCYLQDCKNYQLEESVKYWSDFMR-------TRYHPKSFNL------IQEYQHENS--- 68 (235)
Q Consensus 6 ~~~~~~~~e~~~~Ehg-i~p~g~~~~~~~~~~le~~~~~wsd~~~-------~~~~PRsl~v------i~~~~~~~~--- 68 (235)
||+|.+||+++|.||| |+++|.+ .+....||++... .+|+||+|++ |+++..++.
T Consensus 14 nQIG~~fW~~l~~Eh~~i~~~g~~--------~~~~~~fF~~~~~~~~~~~~~~~~pRav~vD~Ep~vi~~i~~~~~~~~ 85 (465)
T PTZ00387 14 NQLGHRFWDVALKEHKKINANPQY--------DDARDSFFENVSENVNRPGKENLKARAVLVDMEEGVLNQILKSPLGDL 85 (465)
T ss_pred HHHHHHHHHHHHHHhCccCCCCcc--------cccccceecccccccccCCCccccCcccccCCCccHHHHhhcCCcccc
Confidence 7999999999999999 8888764 1355677764322 3499999998 344433221
Q ss_pred ----C------CCCCCCcccccccccccchhhHHHHHHhhhhhcccccCeeEeeCCCCCC-chhhHhhhHHHHhhcCCcc
Q psy7545 69 ----S------QPFDCYLQGGEVWKSELMTEDWTDKVRSFVEECDCLQGFQILSDATGGF-GGLCASSLQHLKDEYSTKS 137 (235)
Q Consensus 69 ----~------~~f~~y~~G~~~~~~~~~~e~i~d~IRk~~E~CD~lqGF~i~~s~~GGt-sG~~s~lle~L~dey~k~~ 137 (235)
+ .+-++|+.|+... +.+..|+++|+||+++|+||+||||++++|++||| ||+|+.++|.|+|+|||+.
T Consensus 86 f~~~~~i~~~~GaGNnwa~G~~~~-g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~lle~l~d~y~~~~ 164 (465)
T PTZ00387 86 FDENFFVSDVSGAGNNWAVGHMEY-GDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTRILGMLEDEFPHVF 164 (465)
T ss_pred cCcccccccCCCCCCCcCCCcccc-cHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcchhHHHHHHHHHHHhcccCc
Confidence 1 1234566665443 24567999999999999999999999999999999 8999999999999999999
Q ss_pred cceeeeeCCCCCccchhhhhhhhhhhHhhhhhcccEEEEeeCC
Q psy7545 138 CLVFPVIPPQTLESNFKLRNVNTALFFASLSELSDVFSPLSIS 180 (235)
Q Consensus 138 ~~~~~v~p~~~~~~~~~~~~yN~~Lsl~~l~e~sd~~~pl~~~ 180 (235)
+++++|+|+. .++.+++|||++|++++|.+++|+++|++|.
T Consensus 165 ~~~~~V~P~~--~~~~vv~pYN~~lsl~~l~e~~d~~i~~dN~ 205 (465)
T PTZ00387 165 RFCPVVFPSA--VDDVITSPYNSFFALRELIEHADCVLPLDND 205 (465)
T ss_pred eeeeEecCCC--CCcceeccchhHHHHHHHHhhCCeEEEeehH
Confidence 9999999974 3578899999999999999999999999993
No 15
>KOG1376|consensus
Probab=99.97 E-value=1.5e-32 Score=245.05 Aligned_cols=196 Identities=22% Similarity=0.275 Sum_probs=163.0
Q ss_pred cchhHHHHHHHHHhCCCCCCCcccCCCCc--CCCCccceeccCccCccCCccccc-----cccccccC------------
Q psy7545 7 PKSFNLIQEYQHENSSQPFDCYLQDCKNY--QLEESVKYWSDFMRTRYHPKSFNL-----IQEYQHEN------------ 67 (235)
Q Consensus 7 ~~~~~~~e~~~~Ehgi~p~g~~~~~~~~~--~le~~~~~wsd~~~~~~~PRsl~v-----i~~~~~~~------------ 67 (235)
|+|=++||+||+||||+|+|.+ ..+++. ..+...+||++...++++||++++ |++++.+.
T Consensus 15 qi~naCwel~clEhgi~~~g~~-p~~~~~~~~~~~~~tff~~t~~~k~~pr~~fVDlEPtidevrtG~y~~lfHPeqlit 93 (407)
T KOG1376|consen 15 QIGNACWELYCLEHGIQPDGQM-PDDKSVGKGDDSFNTFFSETGAGKHVPRAVFVDLEPTIDEVRTGTYRQLFHPEQLIT 93 (407)
T ss_pred cccchhHHHHHHHhcCccCCcC-CCCccccccCcccceeecccccccccceeEEEeccCccchhcccchhhccCchhccC
Confidence 6888999999999999999998 444443 345678999999999999999998 67777664
Q ss_pred ------CCCCCCCCcccccccccccchhhHHHHHHhhhhhcccccCeeEeeCCCCCC-chhhHhhhHHHHhhcCCcccce
Q psy7545 68 ------SSQPFDCYLQGGEVWKSELMTEDWTDKVRSFVEECDCLQGFQILSDATGGF-GGLCASSLQHLKDEYSTKSCLV 140 (235)
Q Consensus 68 ------~~~~f~~y~~G~~~~~~~~~~e~i~d~IRk~~E~CD~lqGF~i~~s~~GGt-sG~~s~lle~L~dey~k~~~~~ 140 (235)
+|.++++|++|+++. +..+|+||+.++.|..||||.++|+.+||+ ||++|.++|.|..+|+||.++.
T Consensus 94 GkedAannyArghyt~g~e~i------d~~~~~Ir~~Ad~C~glqgflvFhs~GGgtGsg~~s~lmerls~~~GKkskl~ 167 (407)
T KOG1376|consen 94 GKEDAANNYARGHYTIGKEII------DLVLDRIRKLADLCTGLQGFLVFHSFGGGTGSGLGSLLMERLSVDYGKKSKLE 167 (407)
T ss_pred cchHhhhhHHhhhhhcchhhh------HHHHHHHHHHHHhhccccceEEEEeccCCCcCCccchhhhhhhhhhhhccccc
Confidence 345778899998875 789999999999999999999999999999 9999999999999999999999
Q ss_pred eeeeCCCCCccchhhhhhhhhhhHhhhhhcccEEEEeeC---CccccccCCCCCCCCCccccchhhHHHhhhhhhhhHhh
Q psy7545 141 FPVIPPQTLESNFKLRNVNTALFFASLSELSDVFSPLSI---SSDCWNQTETYRKFPYMEYNVRECIMKELNNSAYLECL 217 (235)
Q Consensus 141 ~~v~p~~~~~~~~~~~~yN~~Lsl~~l~e~sd~~~pl~~---~~~~w~~~~~~~~~~~~~y~~~~~~~~~i~~~~~~~~~ 217 (235)
|+++|.+.. +..+++|||++|+.+...+++|++++++| ++.|-++. .|++.+|. .|
T Consensus 168 fsiypapqv-St~vvePynsiltth~tle~sD~sf~vdnea~Ydicr~~l-------------------~i~rPtyt-~l 226 (407)
T KOG1376|consen 168 FSIYPAPQV-STAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNL-------------------DIERPTYT-NL 226 (407)
T ss_pred cccccCccc-cccccCCccccccceeecccCcceeecCchhhcchhhhcc-------------------ccCCcccc-ch
Confidence 999998775 67899999999999999999999999998 33443333 34444444 55
Q ss_pred hhhcccccceeee
Q psy7545 218 NRTKESLNPIIGC 230 (235)
Q Consensus 218 ~~~~~~~~~~~~~ 230 (235)
||.+.++.+=|+|
T Consensus 227 nr~i~qVvSsita 239 (407)
T KOG1376|consen 227 NRLIAQVVSSITA 239 (407)
T ss_pred hhhHHhhhccccc
Confidence 5555555555544
No 16
>KOG2530|consensus
Probab=99.97 E-value=5.2e-31 Score=240.15 Aligned_cols=198 Identities=30% Similarity=0.509 Sum_probs=160.6
Q ss_pred HHHHHHH-HhCCCCCCCcc-cCCCCcCCCCccceeccCccCccCCccccccccccccCCCCCCCCCcccccccccccchh
Q psy7545 12 LIQEYQH-ENSSQPFDCYL-QDCKNYQLEESVKYWSDFMRTRYHPKSFNLIQEYQHENSSQPFDCYLQGGEVWKSELMTE 89 (235)
Q Consensus 12 ~~e~~~~-Ehgi~p~g~~~-~~~~~~~le~~~~~wsd~~~~~~~PRsl~vi~~~~~~~~~~~f~~y~~G~~~~~~~~~~e 89 (235)
+.|-+.. ||-++..+... ..++++.++..+++|+||++.+||||+++.++...++. .+|+.|++|+++|++.++.+
T Consensus 111 ~~qs~~~~~~~l~~~~~~~i~~e~~~~~~~sv~~WsDFlr~~yHp~tl~~l~~~~~d~--~a~~~y~iG~d~f~E~s~~e 188 (483)
T KOG2530|consen 111 ELQSLLSAEAELPELNAEEIEYESDYSLLASVPSWSDFLRNHYHPRTLNPLNGLFQDS--GAFDRYSIGYDVFTENSYQE 188 (483)
T ss_pred HHhhhccccCcccccchhhhccccccccccccchHHHHHHhhcCccccccCCccccCh--HHhhccccchhhhhccchhH
Confidence 3443333 66666655422 33567889999999999999999999999999877655 34999999999999999999
Q ss_pred hHHHHHHhhhhhcccccCeeEeeCCCCCCchhhHhhhHHHHhhcCCcccceeeeeCCCC--C-ccch---hhhhhhhhhh
Q psy7545 90 DWTDKVRSFVEECDCLQGFQILSDATGGFGGLCASSLQHLKDEYSTKSCLVFPVIPPQT--L-ESNF---KLRNVNTALF 163 (235)
Q Consensus 90 ~i~d~IRk~~E~CD~lqGF~i~~s~~GGtsG~~s~lle~L~dey~k~~~~~~~v~p~~~--~-~~~~---~~~~yN~~Ls 163 (235)
++.|+||.++||||.|||||++.|+++|||||++++||.|+|||+++.+++|.+.|.+. . +..+ .....|.+++
T Consensus 189 E~~DrLr~~VEECD~lQGFq~l~Did~GfgG~as~~le~l~DEys~~~v~tw~~~~~p~s~~~s~k~ls~~~~~lN~als 268 (483)
T KOG2530|consen 189 EFCDRLRFYVEECDTLQGFQLLSDIDDGFGGFASKLLEELQDEYSKKAVFTWGHNPRPFSQDFSMKRLSNKWLKLNKALS 268 (483)
T ss_pred HHHHHHHHHHHhcccccceEEEEecCCCchhHHHHHHHHHHHhhcCCceeccccCCCCCCcchhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988421 1 1122 2337899999
Q ss_pred HhhhhhcccEEEEeeCCccc---cccCC------CCCCCCCccccchhhHHHhhhhh
Q psy7545 164 FASLSELSDVFSPLSISSDC---WNQTE------TYRKFPYMEYNVRECIMKELNNS 211 (235)
Q Consensus 164 l~~l~e~sd~~~pl~~~~~~---w~~~~------~~~~~~~~~y~~~~~~~~~i~~~ 211 (235)
+++|++.|++++||+..++. |...+ ..+++|+-.++.++..+++++.-
T Consensus 269 ~~qLs~~~~l~~PL~~~~~~~~~~~tsA~~a~~~ds~tlptr~~ssS~~~~~d~ls~ 325 (483)
T KOG2530|consen 269 LSQLSQECSLYFPLSTASGLGDLWETSAKLARAFDSITLPTRLISSSNLRQRDTLSY 325 (483)
T ss_pred HHHHhhhcceeeccccccccccHHHHHHHHHhhcccccccceecchhHHHHHHHHHH
Confidence 99999999999999985544 55554 45556667778877777776643
No 17
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=99.97 E-value=6e-31 Score=242.37 Aligned_cols=178 Identities=20% Similarity=0.241 Sum_probs=127.4
Q ss_pred CcchhHHHHHHHHHhCCCCCCCcccCCCCcCCCCccce--eccCccCccCCccccccccccccCCCCCCCCCcccccccc
Q psy7545 6 NPKSFNLIQEYQHENSSQPFDCYLQDCKNYQLEESVKY--WSDFMRTRYHPKSFNLIQEYQHENSSQPFDCYLQGGEVWK 83 (235)
Q Consensus 6 ~~~~~~~~e~~~~Ehgi~p~g~~~~~~~~~~le~~~~~--wsd~~~~~~~PRsl~vi~~~~~~~~~~~f~~y~~G~~~~~ 83 (235)
|++|.+||+++|.||. .|-.. -.|+|+.+.- =..-.+..|.|+.++.-.. .+-++|+.|+..++
T Consensus 13 nqig~~~w~~~~~eh~-~pR~v------~iD~e~~~i~~i~~~~~~~~~~~~~~~~~~~-------gaGnn~a~G~~~~g 78 (379)
T cd02190 13 NQIGCRFWDLALREHL-KARAV------LIDMEEGVVNEILKGPLRDLFDETQLVTDVS-------GAGNNWAVGYHQYG 78 (379)
T ss_pred HHHHHHHHHHHHHhhc-CCcce------eccCChhHHHHHhcCccccccCcccccccCC-------CCCCCccceeeccc
Confidence 6899999999999991 11110 0122221110 0000122334443332211 12234555544332
Q ss_pred cccchhhHHHHHHhhhhhcccccCeeEeeCCCCCC-chhhHhhhHHHHhhcCCcccceeeeeCCCCCccchhhhhhhhhh
Q psy7545 84 SELMTEDWTDKVRSFVEECDCLQGFQILSDATGGF-GGLCASSLQHLKDEYSTKSCLVFPVIPPQTLESNFKLRNVNTAL 162 (235)
Q Consensus 84 ~~~~~e~i~d~IRk~~E~CD~lqGF~i~~s~~GGt-sG~~s~lle~L~dey~k~~~~~~~v~p~~~~~~~~~~~~yN~~L 162 (235)
.+..|+++|+|||++|+||++|||++++|++||| ||+|+.++|.|+|+|||+.+++++|+|+.. .+.++++||++|
T Consensus 79 -~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~~~~~~~~~v~P~~~--~~~~v~~yN~~l 155 (379)
T cd02190 79 -HQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPEVYRFVTSVYPSAD--DDVITSPYNSVL 155 (379)
T ss_pred -hhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhcCccceEEEeecCCCC--CCceecccHHHH
Confidence 3556899999999999999999999999999999 899999999999999999999999999863 567899999999
Q ss_pred hHhhhhhcccEEEEeeCCccccccCCCCCCCCCccccchhhHHHhhhhhhh
Q psy7545 163 FFASLSELSDVFSPLSISSDCWNQTETYRKFPYMEYNVRECIMKELNNSAY 213 (235)
Q Consensus 163 sl~~l~e~sd~~~pl~~~~~~w~~~~~~~~~~~~~y~~~~~~~~~i~~~~~ 213 (235)
++++|.+++|++++++|.. +. .|+..|.++++.=...+
T Consensus 156 sl~~l~~~~d~~i~~~N~~-l~------------~~~~~N~~ia~~i~~~t 193 (379)
T cd02190 156 ALRELIEHADCVLPIENQA-LV------------PFDAMNSIVANLLLNLT 193 (379)
T ss_pred HHHHHHHhCCeeEEeccHH-HH------------HHHHHHHHHHhhhcCcc
Confidence 9999999999999999962 22 57777777776555444
No 18
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=99.94 E-value=1.7e-27 Score=219.70 Aligned_cols=182 Identities=23% Similarity=0.248 Sum_probs=140.9
Q ss_pred CcchhHHHHHHHHHhCCCCCCCcccCCCCcCCCCccceeccC--ccCccCCccccccccccccCCCCCCCCCcccccccc
Q psy7545 6 NPKSFNLIQEYQHENSSQPFDCYLQDCKNYQLEESVKYWSDF--MRTRYHPKSFNLIQEYQHENSSQPFDCYLQGGEVWK 83 (235)
Q Consensus 6 ~~~~~~~~e~~~~Ehgi~p~g~~~~~~~~~~le~~~~~wsd~--~~~~~~PRsl~vi~~~~~~~~~~~f~~y~~G~~~~~ 83 (235)
|++|.+||+++ . -+|+|+.+.-|... .+..|.|+.++.-++ ...++|++|.+..|.+.
T Consensus 12 ~qig~~~w~~~----------i------~iD~e~~~i~~i~~~~~~~~~~~~~~~~~~~--g~gnn~a~G~~~~g~~~-- 71 (382)
T cd06059 12 NQIGNKFWELL----------I------LVDLDPRVINEILQGQLSKLFDPNQLVNGKE--GSGNNWARGYYTIGPEL-- 71 (382)
T ss_pred HHHHHHHHHHH----------H------cccCCcchhhhhhcccccccCCcccEEeccc--cccccccccccccCHHH--
Confidence 68999999998 1 23556666555543 234577888776543 23456777777777433
Q ss_pred cccchhhHHHHHHhhhhhcccccCeeEeeCCCCCC-chhhHhhhHHHHhhcCCcccceeeeeCCCCCccchhhhhhhhhh
Q psy7545 84 SELMTEDWTDKVRSFVEECDCLQGFQILSDATGGF-GGLCASSLQHLKDEYSTKSCLVFPVIPPQTLESNFKLRNVNTAL 162 (235)
Q Consensus 84 ~~~~~e~i~d~IRk~~E~CD~lqGF~i~~s~~GGt-sG~~s~lle~L~dey~k~~~~~~~v~p~~~~~~~~~~~~yN~~L 162 (235)
.|+++|+||+++|+||++|||++++|++||| ||+++.++|.|+|+|||+.+++++|+|+... .++++++||++|
T Consensus 72 ----~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~~~~i~~~~v~P~~~~-~~~~v~~yN~~l 146 (382)
T cd06059 72 ----IDEILDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKILINTFSIFPSPQG-SSNVVEPYNSIL 146 (382)
T ss_pred ----HHHHHHHHHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcCccceEeEEEeccCcc-CCccccchHHHH
Confidence 5899999999999999999999999999999 8999999999999999999999999998643 347999999999
Q ss_pred hHhhhhhcccEEEEeeCCccccccCCCCCCCCCccccchhhHHHhhhhhhh
Q psy7545 163 FFASLSELSDVFSPLSISSDCWNQTETYRKFPYMEYNVRECIMKELNNSAY 213 (235)
Q Consensus 163 sl~~l~e~sd~~~pl~~~~~~w~~~~~~~~~~~~~y~~~~~~~~~i~~~~~ 213 (235)
++++|.+++|+++|++|. .+.+.......+....|...|.++++.=...+
T Consensus 147 sl~~L~e~sd~~i~~~N~-~l~~~~~~~~~~~~~~~~~~N~iia~~l~~it 196 (382)
T cd06059 147 SLNHLLENSDSVILFDNE-ALYNILTRQLDIDEPSFDDLNNIIAQIISSIT 196 (382)
T ss_pred hHHHHHhcCCeeEEeehH-HHHHHHHHhcCCCCCChHHHHHHHHHhhcccc
Confidence 999999999999999995 22222222234556678888887777554443
No 19
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=99.94 E-value=1.8e-27 Score=203.75 Aligned_cols=166 Identities=22% Similarity=0.346 Sum_probs=138.7
Q ss_pred CcchhHHHHHHHHHhCCCCCCCcccCCCCcCCCCccceeccCccCccCCccccc------cccccccC------------
Q psy7545 6 NPKSFNLIQEYQHENSSQPFDCYLQDCKNYQLEESVKYWSDFMRTRYHPKSFNL------IQEYQHEN------------ 67 (235)
Q Consensus 6 ~~~~~~~~e~~~~Ehgi~p~g~~~~~~~~~~le~~~~~wsd~~~~~~~PRsl~v------i~~~~~~~------------ 67 (235)
|++|.+||++++.||+|+++ .......+....||++-....|+||++++ ++++..++
T Consensus 12 ~qIg~~~~~~l~~e~~~~~~-----~~~~~~~~~~~~~f~~~~~~~~~~r~i~iDtd~~~l~~i~~~~~~~l~~~~~~~~ 86 (216)
T PF00091_consen 12 NQIGDAFWELLCREHGINPD-----SKSQYNRENINSFFSESSSGKYVPRAIAIDTDPKVLDEIRASPKRSLFDPNNLIS 86 (216)
T ss_dssp HHHHHHHHHHHHHHCTBTTT-----SSSSTTSSTGCCTEEESTTTBESEEEEEEESSHHHHHHHHTSEETTESCGGGEEE
T ss_pred HHHHHHHHHHHHHhhccccc-----cccccccccccceeeeccccccccccccccccccccccccccccccccccccccc
Confidence 57899999999999999998 23445567788999999999999999998 33322111
Q ss_pred -CCCCCCCCcccccccccccchhhHHHHHHhhhhhcccccCeeEeeCCCCCC-chhhHhhhHHHHhhcCCcccceeeeeC
Q psy7545 68 -SSQPFDCYLQGGEVWKSELMTEDWTDKVRSFVEECDCLQGFQILSDATGGF-GGLCASSLQHLKDEYSTKSCLVFPVIP 145 (235)
Q Consensus 68 -~~~~f~~y~~G~~~~~~~~~~e~i~d~IRk~~E~CD~lqGF~i~~s~~GGt-sG~~s~lle~L~dey~k~~~~~~~v~p 145 (235)
...+-++|+.|+... +.+..+.++|+||+++|+||.++||+++++++||| ||+++.+++.|+++||++++++++|+|
T Consensus 87 ~~~g~g~n~~~G~~~~-~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~~~~~~~ilP 165 (216)
T PF00091_consen 87 GQEGSGNNWAVGYYTF-GEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKKPIISFSILP 165 (216)
T ss_dssp TSSTSTTSHHHHHHHH-HHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE-
T ss_pred cccccccccccccccc-ccccccccccccchhhccccccccceecccccceeccccccccchhhhccccccceeeccccc
Confidence 113445677776543 23456899999999999999999999999999999 999999999999999999999999999
Q ss_pred CCCCccchhhhhhhhhhhHhhhhhcccEEEEeeCC
Q psy7545 146 PQTLESNFKLRNVNTALFFASLSELSDVFSPLSIS 180 (235)
Q Consensus 146 ~~~~~~~~~~~~yN~~Lsl~~l~e~sd~~~pl~~~ 180 (235)
.. .+.++++||++++++.|.+++|.+++++|.
T Consensus 166 ~~---~e~~~~~~Na~~~l~~l~~~~d~~i~~dN~ 197 (216)
T PF00091_consen 166 FS---SEGVVEPYNALLSLSELQEYADSVILFDND 197 (216)
T ss_dssp CG---GGSHHHHHHHHHHHHHHHHTSSEEEEEEHH
T ss_pred cc---cccccccceehhHHHHHHHhCCEEEEEcHH
Confidence 73 378899999999999999999999999994
No 20
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=99.93 E-value=1e-25 Score=203.78 Aligned_cols=179 Identities=21% Similarity=0.208 Sum_probs=131.2
Q ss_pred CcchhHHHHHHHHHhCCCCCCCcccCCCCcCCCCccceeccCcc--CccCCccccccccccccCCCCCCCCCcccccccc
Q psy7545 6 NPKSFNLIQEYQHENSSQPFDCYLQDCKNYQLEESVKYWSDFMR--TRYHPKSFNLIQEYQHENSSQPFDCYLQGGEVWK 83 (235)
Q Consensus 6 ~~~~~~~~e~~~~Ehgi~p~g~~~~~~~~~~le~~~~~wsd~~~--~~~~PRsl~vi~~~~~~~~~~~f~~y~~G~~~~~ 83 (235)
|++|.+||+++ =-+++|..+..|.+... .+|.|..++.-. ..+-++|+.|+....
T Consensus 12 ~~i~~~~~~~~----------------v~idtd~~~l~~~~~~~~~~~~~~~~~~~~~-------~gag~n~~~G~~~~~ 68 (328)
T cd00286 12 NQIGAKFWEQL----------------VLVDTEPGVIDETLSGPYRLLFCIGQLITHG-------GGAGNNWAFGHETAG 68 (328)
T ss_pred hHHHHHHHHhh----------------heecCCHHHHHHHhCcccccccCccceeecC-------CCCCCCcceeecccc
Confidence 57899999987 12466666666665432 234444432211 123344444443321
Q ss_pred cccchhhHHHHHHhhhhhcccccCeeEeeCCCCCC-chhhHhhhHHHHhhcCCcccceeeeeCCCCCccchhhhhhhhhh
Q psy7545 84 SELMTEDWTDKVRSFVEECDCLQGFQILSDATGGF-GGLCASSLQHLKDEYSTKSCLVFPVIPPQTLESNFKLRNVNTAL 162 (235)
Q Consensus 84 ~~~~~e~i~d~IRk~~E~CD~lqGF~i~~s~~GGt-sG~~s~lle~L~dey~k~~~~~~~v~p~~~~~~~~~~~~yN~~L 162 (235)
.+..|+++|+||+++|+||++|||+++++++||| ||+++.++|+|+|+|||+++++++++|+... . +++++||++|
T Consensus 69 -~~~~e~i~~~ir~~~E~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~~~~~~~~~v~P~~~~-~-~~~~~yNa~l 145 (328)
T cd00286 69 -EEYQEEILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKRLKITFSILPGPDE-G-VIVRPYNSIL 145 (328)
T ss_pred -HHHHHHHHHHHHHHHHhCCCccceEEEeecCCCccccHHHHHHHHHHHHcCccceeEEEecCCCCC-c-chhhhhHHHH
Confidence 2356899999999999999999999999999999 8999999999999999999999999998642 2 6899999999
Q ss_pred hHhhhhhcccEEEEeeCCccccccCCCCCCCCCccccchhhHHHhhhhh
Q psy7545 163 FFASLSELSDVFSPLSISSDCWNQTETYRKFPYMEYNVRECIMKELNNS 211 (235)
Q Consensus 163 sl~~l~e~sd~~~pl~~~~~~w~~~~~~~~~~~~~y~~~~~~~~~i~~~ 211 (235)
+++.|.+++|+++|++|. .+.+.......+....|...|.++++.=..
T Consensus 146 ~l~~L~e~~d~~i~~dN~-~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~ 193 (328)
T cd00286 146 TLHTLTEHSDCLVVIDNE-ALFDICPRPLHIDKPTFDHINELLATALSS 193 (328)
T ss_pred HHHHHHhcCCeEEEecch-hHHHHhHHhcCCCCCCHHHHHHHHHhhccc
Confidence 999999999999999996 232222222335566888888877765433
No 21
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=99.69 E-value=3.1e-17 Score=138.11 Aligned_cols=130 Identities=15% Similarity=0.087 Sum_probs=99.7
Q ss_pred CCCCCCCCcccccccccccchhhHHHHHHhhhhhcccccCeeEeeCCCCCC-chhhHhhhHHHHhhcCCcccceeeeeCC
Q psy7545 68 SSQPFDCYLQGGEVWKSELMTEDWTDKVRSFVEECDCLQGFQILSDATGGF-GGLCASSLQHLKDEYSTKSCLVFPVIPP 146 (235)
Q Consensus 68 ~~~~f~~y~~G~~~~~~~~~~e~i~d~IRk~~E~CD~lqGF~i~~s~~GGt-sG~~s~lle~L~dey~k~~~~~~~v~p~ 146 (235)
++++.|.++.| +.-.+.+..++++|+||+++|+| ++|+++++++||| ||+++.+++.++ +|++.. ++++++|.
T Consensus 50 n~~~~G~~~~~-~~~~g~~~~~~~~~~ir~~le~~---d~~~i~~slgGGTGsG~~~~i~~~~~-~~~~~~-~~~~v~P~ 123 (192)
T smart00864 50 NNWTRGLGAGA-DPEVGREAAEESLDEIREELEGA---DGVFITAGMGGGTGTGAAPVIAEIAK-EYGILT-VAVVTKPF 123 (192)
T ss_pred ccccccCCCCC-ChHHHHHHHHHHHHHHHHHhcCC---CEEEEeccCCCCccccHHHHHHHHHH-HcCCcE-EEEEEEeE
Confidence 44566666533 22223455689999999999999 8999999999999 899999999999 999887 89999994
Q ss_pred CCCccchhhhhhhhhhhHhhhhhcccEEEEeeCCccccccCCCCCCCCCccccchhhHHHhh
Q psy7545 147 QTLESNFKLRNVNTALFFASLSELSDVFSPLSISSDCWNQTETYRKFPYMEYNVRECIMKEL 208 (235)
Q Consensus 147 ~~~~~~~~~~~yN~~Lsl~~l~e~sd~~~pl~~~~~~w~~~~~~~~~~~~~y~~~~~~~~~i 208 (235)
..+.++++||++++++.|.+++|.+++++|. .+.+.......+ ...|+..|+++++.
T Consensus 124 ---~~e~~~~~~Na~~~l~~l~~~~d~~i~~dN~-~l~~~~~~~~~~-~~~~~~~N~~i~~~ 180 (192)
T smart00864 124 ---VFEGVVRPYNAELGLEELREHVDSLIVIDND-ALLDICGRNLPI-RPAFKDANDLLAQA 180 (192)
T ss_pred ---eecchhHHHHHHHHHHHHHHhCCEEEEEEhH-HHHHHHhccCCc-hHHHHHHHHHHHHH
Confidence 2567899999999999999999999999995 232222222222 34677777766644
No 22
>KOG1375|consensus
Probab=99.63 E-value=1.2e-16 Score=143.62 Aligned_cols=129 Identities=23% Similarity=0.416 Sum_probs=109.9
Q ss_pred CCcCCCCccceeccCccCccCCccccc------cccccccCCC---------CCCCCCcccccccccccchhhHHHHHHh
Q psy7545 33 KNYQLEESVKYWSDFMRTRYHPKSFNL------IQEYQHENSS---------QPFDCYLQGGEVWKSELMTEDWTDKVRS 97 (235)
Q Consensus 33 ~~~~le~~~~~wsd~~~~~~~PRsl~v------i~~~~~~~~~---------~~f~~y~~G~~~~~~~~~~e~i~d~IRk 97 (235)
.+.++++..+++.+....+|+||++++ ++.+..++.. ...++|+.|.++. |.
T Consensus 4 ~~~q~~~i~~~~~~~~~~~~~~ravlvdlepgs~dsv~~~~~g~~frp~~~~sg~ghy~~ga~~~------ds------- 70 (369)
T KOG1375|consen 4 SDLQLERINVYYNEAGGGKYVPRAVLVDLEPGSMDSVRSGPFGQIFRPDNGQSGKGHYTEGAELV------DS------- 70 (369)
T ss_pred ccceeeeeeeeecccccccccchhheeeccCccccccccCccceeccCcCCccCccceeeeeeeh------hc-------
Confidence 456788899999998899999999998 3344333211 2256788886553 22
Q ss_pred hhhhcccccCeeEeeCCCCCC-chhhHhhhHHHHhhcCCcccceeeeeCCCCCccchhhhhhhhhhhHhhhhhcccEEEE
Q psy7545 98 FVEECDCLQGFQILSDATGGF-GGLCASSLQHLKDEYSTKSCLVFPVIPPQTLESNFKLRNVNTALFFASLSELSDVFSP 176 (235)
Q Consensus 98 ~~E~CD~lqGF~i~~s~~GGt-sG~~s~lle~L~dey~k~~~~~~~v~p~~~~~~~~~~~~yN~~Lsl~~l~e~sd~~~p 176 (235)
.||+|||||+.|+++||+ +|.+++++..++++||.+...++++.|++. ++.+++|||+.|+++.|.+++|.+++
T Consensus 71 ---~~dclqgfql~hs~gggtGsg~gt~l~~k~~ee~~d~i~~~~sv~ps~k--sd~vvepyna~ls~~ql~en~~et~c 145 (369)
T KOG1375|consen 71 ---SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPK--SDTVVEPYNATLSVHQLVENADETFC 145 (369)
T ss_pred ---ccchhhcceeeeeccCccccCcchhhHHHHHHhccchhcccccccCccc--ccceecccccccchhhhhcCCCcccc
Confidence 899999999999999999 899999999999999999999999999875 78999999999999999999999999
Q ss_pred eeC
Q psy7545 177 LSI 179 (235)
Q Consensus 177 l~~ 179 (235)
++|
T Consensus 146 idN 148 (369)
T KOG1375|consen 146 IDN 148 (369)
T ss_pred ccc
Confidence 998
No 23
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.47 E-value=8.1e-14 Score=127.48 Aligned_cols=91 Identities=18% Similarity=0.254 Sum_probs=83.3
Q ss_pred cchhhHHHHHHhhhhhccc--ccCeeEeeCCCCCC-chhhHhhhHHHHhhcCCcccceeeeeCCCCCccchhhhhhhhhh
Q psy7545 86 LMTEDWTDKVRSFVEECDC--LQGFQILSDATGGF-GGLCASSLQHLKDEYSTKSCLVFPVIPPQTLESNFKLRNVNTAL 162 (235)
Q Consensus 86 ~~~e~i~d~IRk~~E~CD~--lqGF~i~~s~~GGt-sG~~s~lle~L~dey~k~~~~~~~v~p~~~~~~~~~~~~yN~~L 162 (235)
+..++..|.||+++|.||. +|+|+++++++||| +|+++.+++.++++|+ ++++++.++|+.. +..+++||+++
T Consensus 77 ~~aee~~e~I~~~le~~~~~~~d~~~i~aglGGGTGsG~~p~iae~lke~~~-~~~~~iv~~P~~~---eg~~~~~NA~~ 152 (349)
T cd02202 77 EVAEEDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVLAKELKERYE-EPVYALGVLPARE---EGERYSANAAR 152 (349)
T ss_pred HHHHHHHHHHHHHHhccccccccEEEEecccCCCccccHHHHHHHHHHHhCC-ccEEEEEEecCCC---CCchhhHHHHH
Confidence 3457788899999999997 99999999999999 8999999999999999 8888999999753 34889999999
Q ss_pred hHhhhhhcccEEEEeeCC
Q psy7545 163 FFASLSELSDVFSPLSIS 180 (235)
Q Consensus 163 sl~~l~e~sd~~~pl~~~ 180 (235)
+++.|.+++|.+++++|.
T Consensus 153 ~l~~L~~~~D~viv~dNd 170 (349)
T cd02202 153 SLDALSEEADAIILFDND 170 (349)
T ss_pred HHHHHHHhCCEEEEEehH
Confidence 999999999999999995
No 24
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.30 E-value=2.5e-12 Score=115.63 Aligned_cols=120 Identities=17% Similarity=0.126 Sum_probs=90.8
Q ss_pred CCCCcccccccccccchhhHHHHHHhhhhhcccccCeeEeeCCCCCC-chhhHhhhHHHHhhcCCcccceeeeeCCCCCc
Q psy7545 72 FDCYLQGGEVWKSELMTEDWTDKVRSFVEECDCLQGFQILSDATGGF-GGLCASSLQHLKDEYSTKSCLVFPVIPPQTLE 150 (235)
Q Consensus 72 f~~y~~G~~~~~~~~~~e~i~d~IRk~~E~CD~lqGF~i~~s~~GGt-sG~~s~lle~L~dey~k~~~~~~~v~p~~~~~ 150 (235)
-+++..|++. .++.+|+||+.+|.||. |+++++++||| +|+++.+++.++++|+ ++++|.|.+..
T Consensus 61 G~~~~~G~~~------a~e~~~~I~~~le~~D~---v~i~aglGGGTGSG~ap~ia~~~ke~~~----~~~~vvt~Pf~- 126 (303)
T cd02191 61 GANPELGAEA------AEEVQEAIDNIPVHVDM---VFITAGLGGGTGTGGAPVVAEHLKRIGT----LTVAVVTLPFS- 126 (303)
T ss_pred CCCHHHHHHH------HHHHHHHHHHHHcCCCE---EEEEeccCCccchhHHHHHHHHHHHhCC----CEEEEEeCCcc-
Confidence 3455556544 47899999999999995 99999999999 8999999999999995 46777765432
Q ss_pred cchhhhhhhhhhhHhhhhhcccEEEEeeCCccccccCCCCCCCCCccccchhhHHHhh
Q psy7545 151 SNFKLRNVNTALFFASLSELSDVFSPLSISSDCWNQTETYRKFPYMEYNVRECIMKEL 208 (235)
Q Consensus 151 ~~~~~~~yN~~Lsl~~l~e~sd~~~pl~~~~~~w~~~~~~~~~~~~~y~~~~~~~~~i 208 (235)
.+..+++||+.++++.|.+++|.+++++|. .+.+.... ..+.. .|+..|.++++.
T Consensus 127 ~Eg~~~~~NA~~~l~~L~~~~D~~iv~dN~-~L~~~~~~-~~~~~-af~~~N~~ia~~ 181 (303)
T cd02191 127 DEGGIRMLNAAEGFQTLVREVDNLMVIPNE-KLRQIGEK-ASLEG-AFDHADEVLVRA 181 (303)
T ss_pred cCCccchhhHHHHHHHHHHhCCEEEEEehH-HHHHHhhc-CChHH-HHHHHHHHHHHH
Confidence 466889999999999999999999999995 23222211 22322 666666666544
No 25
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=99.15 E-value=4e-11 Score=109.73 Aligned_cols=118 Identities=14% Similarity=0.176 Sum_probs=83.8
Q ss_pred CCCcccccccccccchhhHHHHHHhhhhhcccccCeeEeeCCCCCC-chhhHhhhHHHHhhcCCcccceeeeeCCCCCcc
Q psy7545 73 DCYLQGGEVWKSELMTEDWTDKVRSFVEECDCLQGFQILSDATGGF-GGLCASSLQHLKDEYSTKSCLVFPVIPPQTLES 151 (235)
Q Consensus 73 ~~y~~G~~~~~~~~~~e~i~d~IRk~~E~CD~lqGF~i~~s~~GGt-sG~~s~lle~L~dey~k~~~~~~~v~p~~~~~~ 151 (235)
++|..|++. .++.+|.||+.+|.||.+ +++++++||| ||++. ++..+..|++ ++++++.+.+. ..
T Consensus 79 ~~~~~G~~~------aee~~d~Ir~~le~~D~v---fI~aglGGGTGSG~ap-via~~ake~~---~l~vaivt~Pf-~~ 144 (349)
T TIGR00065 79 GNPEIGRKA------AEESRDEIRKLLEGADMV---FITAGMGGGTGTGAAP-VVAKIAKELG---ALTVAVVTKPF-KF 144 (349)
T ss_pred CCHHHHHHH------HHHHHHHHHHHHhCCCEE---EEEEeccCccchhHHH-HHHHHHHHcC---CCEEEEEeCCc-cc
Confidence 455555444 478999999999999995 9999999999 89877 5556666775 34566654332 24
Q ss_pred chhhhhhhhhhhHhhhhhcccEEEEeeCCccccccCCCCCCCCCccccchhhHHHh
Q psy7545 152 NFKLRNVNTALFFASLSELSDVFSPLSISSDCWNQTETYRKFPYMEYNVRECIMKE 207 (235)
Q Consensus 152 ~~~~~~yN~~Lsl~~l~e~sd~~~pl~~~~~~w~~~~~~~~~~~~~y~~~~~~~~~ 207 (235)
+..+++||+.+++..|.+++|.+++++|. .+.+..+. ..+.. .|+..|.++++
T Consensus 145 Eg~~r~~nA~~~l~~L~~~~D~vividNd-~L~~~~~~-~~i~~-af~~~N~iia~ 197 (349)
T TIGR00065 145 EGLKRRKKAEEGLERLKQAVDTLIVIPND-KLLEVVPN-LPLND-AFKVADDVLVR 197 (349)
T ss_pred cchhhHHHHHHHHHHHHHhCCEEEEEeCH-HHHHhhcC-CCHHH-HHHHHHHHHHH
Confidence 67889999999999999999999999995 33333222 23322 55555555444
No 26
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.10 E-value=9.5e-11 Score=105.38 Aligned_cols=121 Identities=12% Similarity=0.119 Sum_probs=84.8
Q ss_pred CCCCcccccccccccchhhHHHHHHhhhhhcccccCeeEeeCCCCCC-chhhHhhhHHHHhhcCCcccceeeeeCCCCCc
Q psy7545 72 FDCYLQGGEVWKSELMTEDWTDKVRSFVEECDCLQGFQILSDATGGF-GGLCASSLQHLKDEYSTKSCLVFPVIPPQTLE 150 (235)
Q Consensus 72 f~~y~~G~~~~~~~~~~e~i~d~IRk~~E~CD~lqGF~i~~s~~GGt-sG~~s~lle~L~dey~k~~~~~~~v~p~~~~~ 150 (235)
-+++..|++. .++.+|+||+.+|.||.+ +++++++||| ||+++.+. .+..||++ +++++.+.|. .
T Consensus 61 g~~~~~g~~~------a~~~~~~I~~~l~~~d~v---~i~aglGGGTGSG~ap~ia-~~a~e~g~---~~~~vvt~Pf-~ 126 (304)
T cd02201 61 GGDPEVGRKA------AEESREEIKEALEGADMV---FITAGMGGGTGTGAAPVIA-KIAKEMGA---LTVAVVTKPF-S 126 (304)
T ss_pred CCCHHHHHHH------HHHHHHHHHHHHhCCCEE---EEeeccCCCcchhHHHHHH-HHHHHcCC---CEEEEEeCCc-c
Confidence 3456666544 478889999999999985 9999999999 89977754 56667774 3555554332 2
Q ss_pred cchhhhhhhhhhhHhhhhhcccEEEEeeCCccccccCCCCCCCCCccccchhhHHHhh
Q psy7545 151 SNFKLRNVNTALFFASLSELSDVFSPLSISSDCWNQTETYRKFPYMEYNVRECIMKEL 208 (235)
Q Consensus 151 ~~~~~~~yN~~Lsl~~l~e~sd~~~pl~~~~~~w~~~~~~~~~~~~~y~~~~~~~~~i 208 (235)
.+..+++||+.+++..|.+++|.+++++|. .+.+.......+.. .|+..|.++++.
T Consensus 127 ~Eg~~~~~nA~~~l~~L~~~~d~~ividN~-~L~~~~~~~~~i~~-af~~~n~~ia~~ 182 (304)
T cd02201 127 FEGKKRMRQAEEGLEELRKHVDTLIVIPND-KLLEVVDKNLPLLE-AFKLADDVLAQA 182 (304)
T ss_pred ccchhHHHHHHHHHHHHHHhCCEEEEEecH-HHHHhhccCCCHHH-HHHHHHHHHHHH
Confidence 456799999999999999999999999995 33332222223322 455555554443
No 27
>PRK13018 cell division protein FtsZ; Provisional
Probab=98.76 E-value=1e-08 Score=94.68 Aligned_cols=86 Identities=14% Similarity=0.127 Sum_probs=72.3
Q ss_pred chhhHHHHHHhhhhhcccccCeeEeeCCCCCC-chhhHhhhHHHHhhcCCcccceeeeeCCCCCccchhhhhhhhhhhHh
Q psy7545 87 MTEDWTDKVRSFVEECDCLQGFQILSDATGGF-GGLCASSLQHLKDEYSTKSCLVFPVIPPQTLESNFKLRNVNTALFFA 165 (235)
Q Consensus 87 ~~e~i~d~IRk~~E~CD~lqGF~i~~s~~GGt-sG~~s~lle~L~dey~k~~~~~~~v~p~~~~~~~~~~~~yN~~Lsl~ 165 (235)
..++..|.||+.+|.||. |+++++++||| ||++..+++.+++ ++ ....++.+.|+. .+-..+..|+.+++.
T Consensus 98 aaee~~d~I~~~le~~D~---vfI~aGLGGGTGSGaapvIa~iake-~g-~ltv~vVt~Pf~---~EG~~r~~nA~~gL~ 169 (378)
T PRK13018 98 AAEESRDEIKEVLKGADL---VFVTAGMGGGTGTGAAPVVAEIAKE-QG-ALVVGVVTKPFK---FEGRARMQKAEEGIE 169 (378)
T ss_pred HHHHHHHHHHHHhcCCCE---EEEEeeccCcchhhHHHHHHHHHHH-cC-CCeEEEEEcCcc---cccHhHHHHHHHHHH
Confidence 347888999999999998 99999999999 8999988888886 54 333455677764 345678899999999
Q ss_pred hhhhcccEEEEeeCC
Q psy7545 166 SLSELSDVFSPLSIS 180 (235)
Q Consensus 166 ~l~e~sd~~~pl~~~ 180 (235)
.|.+++|.+++++|.
T Consensus 170 ~L~e~~D~vividNd 184 (378)
T PRK13018 170 RLREAADTVIVIDNN 184 (378)
T ss_pred HHHHhCCEEEEEecH
Confidence 999999999999995
No 28
>PRK09330 cell division protein FtsZ; Validated
Probab=98.68 E-value=3.3e-08 Score=91.49 Aligned_cols=85 Identities=18% Similarity=0.197 Sum_probs=73.4
Q ss_pred hhhHHHHHHhhhhhcccccCeeEeeCCCCCC-chhhHhhhHHHHhhcCCcccceeeeeCCCCCccchhhhhhhhhhhHhh
Q psy7545 88 TEDWTDKVRSFVEECDCLQGFQILSDATGGF-GGLCASSLQHLKDEYSTKSCLVFPVIPPQTLESNFKLRNVNTALFFAS 166 (235)
Q Consensus 88 ~e~i~d~IRk~~E~CD~lqGF~i~~s~~GGt-sG~~s~lle~L~dey~k~~~~~~~v~p~~~~~~~~~~~~yN~~Lsl~~ 166 (235)
.++..|.||+.+|.||.+ ++++.++||| +|.+. ++..+..|++ +++++|.+.+. ..+..++++|+.+++..
T Consensus 84 aee~~e~I~~~l~~~D~v---fI~AGmGGGTGTGaap-vIA~iake~g---~ltvaVvt~PF-~fEG~~r~~nA~~gL~~ 155 (384)
T PRK09330 84 AEESREEIREALEGADMV---FITAGMGGGTGTGAAP-VVAEIAKELG---ILTVAVVTKPF-SFEGKKRMKQAEEGIEE 155 (384)
T ss_pred HHHHHHHHHHHHcCCCEE---EEEecCCCcccHHHHH-HHHHHHHHcC---CcEEEEEecCc-cccchhHHHHHHHHHHH
Confidence 477889999999999997 8999999999 89888 7778888887 56777777543 35678899999999999
Q ss_pred hhhcccEEEEeeCC
Q psy7545 167 LSELSDVFSPLSIS 180 (235)
Q Consensus 167 l~e~sd~~~pl~~~ 180 (235)
|.+++|.++.++|.
T Consensus 156 L~~~~D~vIvi~Nd 169 (384)
T PRK09330 156 LRKHVDTLIVIPND 169 (384)
T ss_pred HHHHCCEEEEEecH
Confidence 99999999999995
No 29
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=94.07 E-value=0.18 Score=46.26 Aligned_cols=85 Identities=14% Similarity=0.122 Sum_probs=62.5
Q ss_pred hhhHHHHHHhhhhhcccccCeeEeeCCCCCC-chhhHhhhHHHHhhcCCcccceeeeeCCCCCccchhhhhhhhhhhHhh
Q psy7545 88 TEDWTDKVRSFVEECDCLQGFQILSDATGGF-GGLCASSLQHLKDEYSTKSCLVFPVIPPQTLESNFKLRNVNTALFFAS 166 (235)
Q Consensus 88 ~e~i~d~IRk~~E~CD~lqGF~i~~s~~GGt-sG~~s~lle~L~dey~k~~~~~~~v~p~~~~~~~~~~~~yN~~Lsl~~ 166 (235)
.++..+.|++.++.-| =+.++..++||| .|.+-.+.+.+++ .........++|... +-..+.-|+.-.+..
T Consensus 82 Aee~~~~I~~~l~g~d---mvfitaG~GGGTGtGaaPVvakiake--~g~ltvavvt~Pf~~---EG~~r~~~A~~gi~~ 153 (338)
T COG0206 82 AEESIEEIEEALKGAD---MVFVTAGMGGGTGTGAAPVVAEIAKE--LGALTVAVVTLPFSF---EGSPRMENAEEGIEE 153 (338)
T ss_pred HHHHHHHHHHHhccCC---eEEEEeeecCCccccccHHHHHHHHh--cCCcEEEEEEecchh---cCchHHHHHHHHHHH
Confidence 3555666666666655 578889999999 6877777766665 344444667788642 334567799999999
Q ss_pred hhhcccEEEEeeCC
Q psy7545 167 LSELSDVFSPLSIS 180 (235)
Q Consensus 167 l~e~sd~~~pl~~~ 180 (235)
|.+++|.++.++|.
T Consensus 154 L~~~~DtlIvi~Nd 167 (338)
T COG0206 154 LREVVDTLIVIPND 167 (338)
T ss_pred HHHhCCcEEEEecH
Confidence 99999999999985
No 30
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=72.78 E-value=3.7 Score=32.31 Aligned_cols=41 Identities=20% Similarity=0.304 Sum_probs=30.9
Q ss_pred hhHHHHHHhhhhhcccccCeeEeeCCCCCC-chhhHhhhHHHHhh
Q psy7545 89 EDWTDKVRSFVEECDCLQGFQILSDATGGF-GGLCASSLQHLKDE 132 (235)
Q Consensus 89 e~i~d~IRk~~E~CD~lqGF~i~~s~~GGt-sG~~s~lle~L~de 132 (235)
+...++|+..+++++. +|..++.|+ ||+ .- ....+|.+.++
T Consensus 42 gt~~~~i~~ai~~~~~-dGVlVltDL-Gssp~n-~~~a~e~~~~~ 83 (124)
T PRK14484 42 GTSFDQIQEAIEKNES-DGVLIFFDL-GSAEMN-AEMAIEMLDGE 83 (124)
T ss_pred cchHHHHHHHHHhcCc-CCeEEEEeC-CChHHH-HHHHHHhcCCC
Confidence 5677889999999999 999999999 776 32 33445566545
No 31
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=70.07 E-value=5.7 Score=30.16 Aligned_cols=31 Identities=39% Similarity=0.556 Sum_probs=27.7
Q ss_pred hhhHHHHHHhhhhhcccccCeeEeeCCCCCC
Q psy7545 88 TEDWTDKVRSFVEECDCLQGFQILSDATGGF 118 (235)
Q Consensus 88 ~e~i~d~IRk~~E~CD~lqGF~i~~s~~GGt 118 (235)
.+++.+++++.+++-+.-+|+.++.|+.||+
T Consensus 40 ~~~~~~~l~~~i~~~~~~~~vlil~Dl~ggs 70 (116)
T PF03610_consen 40 IEDFEEKLEEAIEELDEGDGVLILTDLGGGS 70 (116)
T ss_dssp HHHHHHHHHHHHHHCCTTSEEEEEESSTTSH
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEeeCCCCc
Confidence 4678889999999999889999999999986
No 32
>PF13809 Tubulin_2: Tubulin like
Probab=68.90 E-value=18 Score=33.09 Aligned_cols=62 Identities=16% Similarity=0.164 Sum_probs=39.6
Q ss_pred CeeEeeCCCCCC-chhhHhhhHHHHhhc-----CCcccceeeeeCCCCCc--cchhhhhhhhhhhHhhhh
Q psy7545 107 GFQILSDATGGF-GGLCASSLQHLKDEY-----STKSCLVFPVIPPQTLE--SNFKLRNVNTALFFASLS 168 (235)
Q Consensus 107 GF~i~~s~~GGt-sG~~s~lle~L~dey-----~k~~~~~~~v~p~~~~~--~~~~~~~yN~~Lsl~~l~ 168 (235)
-+.|+.|++||| ||.---+.-.|++.+ ....+..+.+.|..-.. ........|+--+|..|.
T Consensus 149 ~V~Vv~SlaGGTGSG~~lDia~~lr~~~~~~~~~~~~i~~~~~lP~~f~~~~~~~~~~~aNayAAL~EL~ 218 (345)
T PF13809_consen 149 NVFVVGSLAGGTGSGMFLDIAYLLRDILKQPGQDNPRIYGFFVLPDAFPSIPGGGERVRANAYAALKELD 218 (345)
T ss_pred EEEEEEecCCccchhHHHHHHHHHHHHhhcccCCCceEEEEEECCcccccCCcchhhhhhHHHHHHHHHH
Confidence 367889999999 898888888888866 23346677888862111 111333456655555553
No 33
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=66.09 E-value=9.4 Score=29.27 Aligned_cols=36 Identities=22% Similarity=0.237 Sum_probs=29.6
Q ss_pred hhhHHHHHHhhhhhcccccCeeEeeCCCCCC-chhhH
Q psy7545 88 TEDWTDKVRSFVEECDCLQGFQILSDATGGF-GGLCA 123 (235)
Q Consensus 88 ~e~i~d~IRk~~E~CD~lqGF~i~~s~~GGt-sG~~s 123 (235)
.+++.+++++.+++-+.=+|+.++.|+-||+ .-.++
T Consensus 41 ~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp~n~a~ 77 (116)
T TIGR00824 41 AETLQEKYNAALADLDTEEEVLFLVDIFGGSPYNAAA 77 (116)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHH
Confidence 4678889999998887778999999999998 55443
No 34
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=63.19 E-value=11 Score=28.99 Aligned_cols=35 Identities=29% Similarity=0.462 Sum_probs=28.7
Q ss_pred hhhHHHHHHhhhhhcccccCeeEeeCCCCCC-chhh
Q psy7545 88 TEDWTDKVRSFVEECDCLQGFQILSDATGGF-GGLC 122 (235)
Q Consensus 88 ~e~i~d~IRk~~E~CD~lqGF~i~~s~~GGt-sG~~ 122 (235)
.+++.+++++.+++.+.-+|+.++.|+-||+ .-..
T Consensus 40 ~~~~~~~i~~~i~~~~~~~~viil~Dl~GGSp~n~~ 75 (122)
T cd00006 40 PDDLLEKIKAALAELDSGEGVLILTDLFGGSPNNAA 75 (122)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEeCCCCCHHHHH
Confidence 3678888888898888888999999999998 4433
No 35
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=51.01 E-value=99 Score=28.23 Aligned_cols=84 Identities=19% Similarity=0.188 Sum_probs=49.6
Q ss_pred hHHHHHHhhhhhcccccCeeEeeCCCCCCchhhHhhhHHHHhhcCCcccceeeeeCCCCCccchhhhhhhhhhhHhhhhh
Q psy7545 90 DWTDKVRSFVEECDCLQGFQILSDATGGFGGLCASSLQHLKDEYSTKSCLVFPVIPPQTLESNFKLRNVNTALFFASLSE 169 (235)
Q Consensus 90 ~i~d~IRk~~E~CD~lqGF~i~~s~~GGtsG~~s~lle~L~dey~k~~~~~~~v~p~~~~~~~~~~~~yN~~Lsl~~l~e 169 (235)
.+-+.|+... +..+||.|+|-.+ |=-.++.+|..+-...+|-.+++=+-.|.....++.....++++. +..-..
T Consensus 70 ~la~~I~~~~---~~~dG~VVtHGTD--TmeeTA~~L~~~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av~-~A~~~~ 143 (335)
T PRK09461 70 HIADDIKANY---DDYDGFVILHGTD--TMAYTASALSFMLENLGKPVIVTGSQIPLAELRSDGQTNLLNALY-VAANYP 143 (335)
T ss_pred HHHHHHHHHh---ccCCeEEEeeccc--hHHHHHHHHHHHHhCCCCCEEEeCCCCCCCCCCchHHHHHHHHHH-HHcCCC
Confidence 4444454433 6789999999432 246778888776655677677777788876544444444444443 333222
Q ss_pred cccEEEEeeC
Q psy7545 170 LSDVFSPLSI 179 (235)
Q Consensus 170 ~sd~~~pl~~ 179 (235)
.+...+.|+.
T Consensus 144 ~~GV~V~f~~ 153 (335)
T PRK09461 144 INEVTLFFNN 153 (335)
T ss_pred CCeEEEEECC
Confidence 3356666653
No 36
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=43.59 E-value=64 Score=29.10 Aligned_cols=84 Identities=13% Similarity=0.017 Sum_probs=47.4
Q ss_pred hHHHHHHhhhhhcccccCeeEeeCCCCCCchhhHhhhHHHHhhcCCcccceeeeeCCCCCccchhhhhhhhhhhHhhhhh
Q psy7545 90 DWTDKVRSFVEECDCLQGFQILSDATGGFGGLCASSLQHLKDEYSTKSCLVFPVIPPQTLESNFKLRNVNTALFFASLSE 169 (235)
Q Consensus 90 ~i~d~IRk~~E~CD~lqGF~i~~s~~GGtsG~~s~lle~L~dey~k~~~~~~~v~p~~~~~~~~~~~~yN~~Lsl~~l~e 169 (235)
.+-+.|++.++ ..+||.++|-.+ |=-.++.+|..+-+..+|-.+++=+..|.....++.....++++....+-.
T Consensus 61 ~la~~i~~~~~---~~~GvVVtHGTD--Tme~tA~~Ls~~l~~l~kPVVlTGa~~P~~~~~sDg~~NL~~Av~~A~~~~- 134 (313)
T PF00710_consen 61 ELARAIQAALD---DYDGVVVTHGTD--TMEETAFFLSLLLDNLDKPVVLTGAMRPLSAPGSDGPRNLYDAVRVAASPA- 134 (313)
T ss_dssp HHHHHHHHHHT---TCSEEEEE--ST--THHHHHHHHHHHEES-SSEEEEE--SS-TTSTT-SHHHHHHHHHHHHHSGG-
T ss_pred HHHHHHHHHHH---hcCeEEEecCch--HHHHHHHHHHHHhcCCCCCEEEeCCcCCCcCCCCccHHHHHHHHHHHhccc-
Confidence 44455555553 389999999432 235666777766665566667777888876544555555555554444433
Q ss_pred cccEEEEeeC
Q psy7545 170 LSDVFSPLSI 179 (235)
Q Consensus 170 ~sd~~~pl~~ 179 (235)
....++.++.
T Consensus 135 ~~GV~v~f~~ 144 (313)
T PF00710_consen 135 GPGVLVVFNG 144 (313)
T ss_dssp TSSEEEEETT
T ss_pred CCceEEEeCC
Confidence 6677777765
No 37
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=42.57 E-value=79 Score=29.80 Aligned_cols=84 Identities=12% Similarity=0.076 Sum_probs=51.7
Q ss_pred hHHHHHHhhhhhcccccCeeEeeCCCCCCchhhHhhhHHHHhhcCCcccceeeeeCCCCCccchhhhhhhhhhhHhhhhh
Q psy7545 90 DWTDKVRSFVEECDCLQGFQILSDATGGFGGLCASSLQHLKDEYSTKSCLVFPVIPPQTLESNFKLRNVNTALFFASLSE 169 (235)
Q Consensus 90 ~i~d~IRk~~E~CD~lqGF~i~~s~~GGtsG~~s~lle~L~dey~k~~~~~~~v~p~~~~~~~~~~~~yN~~Lsl~~l~e 169 (235)
.+-+.|++.++ +..+||.|+|-.+ |=-.++..|..+-+..+|-.+++=+..|....+++.....++++....+ .
T Consensus 127 ~La~~I~~~~~--~~~dGvVVtHGTD--TM~yTA~aLs~~l~~~~kPVVlTGAqrp~~~~~sDa~~NL~~Av~~A~~--~ 200 (404)
T TIGR02153 127 KIAEAVAKALK--EGADGVVVAHGTD--TMAYTAAALSFMFETLPVPVVLVGAQRSSDRPSSDAALNLICAVRAATS--P 200 (404)
T ss_pred HHHHHHHHHhh--cCCCcEEEecCCh--hHHHHHHHHHHHhhCCCCCEEEECCCCCCCCCCchHHHHHHHHHHHHhC--C
Confidence 44455555554 3469999999432 2477777777655555777777778888766555555555555544332 4
Q ss_pred cccEEEEeeC
Q psy7545 170 LSDVFSPLSI 179 (235)
Q Consensus 170 ~sd~~~pl~~ 179 (235)
.+...+.|+.
T Consensus 201 ~~gV~V~f~g 210 (404)
T TIGR02153 201 IAEVTVVMHG 210 (404)
T ss_pred CCcEEEEECC
Confidence 4566666653
No 38
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=40.52 E-value=29 Score=27.14 Aligned_cols=29 Identities=28% Similarity=0.356 Sum_probs=24.2
Q ss_pred hhHHHHHHhhhhhccc-ccCeeEeeCCCCCC
Q psy7545 89 EDWTDKVRSFVEECDC-LQGFQILSDATGGF 118 (235)
Q Consensus 89 e~i~d~IRk~~E~CD~-lqGF~i~~s~~GGt 118 (235)
+...++|++.+|+++. =+|+.++.|+ ||+
T Consensus 42 gt~~~~I~~ai~~~~~~~dgVlvl~DL-Ggs 71 (125)
T TIGR02364 42 GTSPDKIIEAIEKADNEADGVLIFYDL-GSA 71 (125)
T ss_pred cchHHHHHHHHHHhcCCCCCEEEEEcC-CCc
Confidence 4677888889999966 7899999999 664
No 39
>PF09322 DUF1979: Domain of unknown function (DUF1979); InterPro: IPR015401 This N-terminal domain is functionally uncharacterised and found in various Oryza sativa (Rice) mutator-like transposases.
Probab=38.96 E-value=8.1 Score=25.88 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=20.1
Q ss_pred cccCcchhHHHHHHHHHhCCCC
Q psy7545 3 TRYNPKSFNLIQEYQHENSSQP 24 (235)
Q Consensus 3 ~~~~~~~~~~~e~~~~Ehgi~p 24 (235)
-||||.|+++-+-++.+-||+-
T Consensus 16 vR~Gp~GvdLs~Fi~~~rGIdr 37 (58)
T PF09322_consen 16 VRYGPTGVDLSEFIVTSRGIDR 37 (58)
T ss_pred eeECCCccchhHeeeeccccCc
Confidence 4899999999999999999964
No 40
>PRK15088 PTS system mannose-specific transporter subunits IIAB; Provisional
Probab=36.39 E-value=45 Score=30.41 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=29.9
Q ss_pred hhhHHHHHHhhhhhcccccCeeEeeCCCCCC-chhhHh
Q psy7545 88 TEDWTDKVRSFVEECDCLQGFQILSDATGGF-GGLCAS 124 (235)
Q Consensus 88 ~e~i~d~IRk~~E~CD~lqGF~i~~s~~GGt-sG~~s~ 124 (235)
.+++.+++++.+++.+.=+|+.++.|+-||+ .-.+..
T Consensus 42 ~~~~~~~l~~~i~~~~~~d~vlILtDl~GGSP~N~a~~ 79 (322)
T PRK15088 42 AETLIEKYNAQLAKLDTSKGVLFLVDTWGGSPFNAASR 79 (322)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHH
Confidence 3678888989999987778999999999998 544333
No 41
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=34.32 E-value=1e+02 Score=27.93 Aligned_cols=85 Identities=16% Similarity=0.042 Sum_probs=48.6
Q ss_pred HHHHHhhhhh---cccccCeeEeeCCCCCCchhhHhhhHHHHhhcCCcccceeeeeCCCCCccchhhhhhhhhhhHhhhh
Q psy7545 92 TDKVRSFVEE---CDCLQGFQILSDATGGFGGLCASSLQHLKDEYSTKSCLVFPVIPPQTLESNFKLRNVNTALFFASLS 168 (235)
Q Consensus 92 ~d~IRk~~E~---CD~lqGF~i~~s~~GGtsG~~s~lle~L~dey~k~~~~~~~v~p~~~~~~~~~~~~yN~~Lsl~~l~ 168 (235)
+.+|.+.+++ -+..+||.|+|-.+ |=-.++.+|..+-+..+|-.+++=+..|....+++.....++++. +....
T Consensus 62 w~~la~~i~~~~~~~~~dG~VVtHGTD--TmeeTA~~Ls~~l~~l~kPVVlTGa~rp~~~~~sDg~~NL~~Av~-~A~~~ 138 (323)
T smart00870 62 WLKLAKRINEALADDGYDGVVVTHGTD--TLEETAYFLSLTLDSLDKPVVLTGAMRPATALSSDGPANLLDAVR-VAASP 138 (323)
T ss_pred HHHHHHHHHHHhccCCCCEEEEecCCc--cHHHHHHHHHHHhhcCCCCEEEECCCCCCCCCCchhHHHHHHHHH-HHcCc
Confidence 3344444443 25779999999432 236667777665555567667777788875544444444444443 33322
Q ss_pred h--cccEEEEeeC
Q psy7545 169 E--LSDVFSPLSI 179 (235)
Q Consensus 169 e--~sd~~~pl~~ 179 (235)
+ .....+.++.
T Consensus 139 ~a~~~GV~V~f~~ 151 (323)
T smart00870 139 EARGRGVLVVFND 151 (323)
T ss_pred ccCCCEEEEEECC
Confidence 2 3456666654
No 42
>PF02187 GAS2: Growth-Arrest-Specific Protein 2 Domain; InterPro: IPR003108 The growth-arrest-specific protein 2 domain is found associated with the spectrin repeat, calponin homology domain and EF hand in many proteins. It is found among others in the growth arrest-specific protein 2 [].; GO: 0007050 cell cycle arrest; PDB: 1V5R_A.
Probab=33.43 E-value=44 Score=23.89 Aligned_cols=23 Identities=30% Similarity=0.700 Sum_probs=14.4
Q ss_pred hHHHHHHhhhhhcccccCeeEee
Q psy7545 90 DWTDKVRSFVEECDCLQGFQILS 112 (235)
Q Consensus 90 ~i~d~IRk~~E~CD~lqGF~i~~ 112 (235)
.++|.+++.+++|-+..-|.+..
T Consensus 2 ~ld~~V~~iv~~C~C~~~f~v~r 24 (73)
T PF02187_consen 2 KLDDEVRRIVNQCSCPNKFPVER 24 (73)
T ss_dssp HHHHHHHHHHTS--SSS---EEE
T ss_pred cHHHHHHHHHhcCCCCCceeEEE
Confidence 57788999999999888776643
No 43
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=32.34 E-value=2.5e+02 Score=25.39 Aligned_cols=83 Identities=16% Similarity=0.137 Sum_probs=47.7
Q ss_pred hHHHHHHhhhhhcccccCeeEeeCCCCCCchhhHhhhHHHHhhcCCcccceeeeeCCCCCccchhhhhhhhhhhHhhhhh
Q psy7545 90 DWTDKVRSFVEECDCLQGFQILSDATGGFGGLCASSLQHLKDEYSTKSCLVFPVIPPQTLESNFKLRNVNTALFFASLSE 169 (235)
Q Consensus 90 ~i~d~IRk~~E~CD~lqGF~i~~s~~GGtsG~~s~lle~L~dey~k~~~~~~~v~p~~~~~~~~~~~~yN~~Lsl~~l~e 169 (235)
.+.+.|++..+ | .+||.|+|-.+ |=-.++..|..+-+. +|-.+++=+..|.....++.....++ ++......+
T Consensus 67 ~l~~~I~~~~~--~-~dGiVVtHGTD--TmeeTA~~L~~~l~~-~kPVVlTGA~rp~~~~~sDg~~NL~~-Al~~A~~~~ 139 (323)
T cd00411 67 KIAKDINELYD--S-YDGFVITHGTD--TMEETAYFLSLTLEN-DKPVVLTGSMRPSTELSADGPLNLYN-AVYVAANYD 139 (323)
T ss_pred HHHHHHHHHHH--h-cCcEEEEcCcc--cHHHHHHHHHHHhcC-CCCEEEECCCCCCCCcCcchHHHHHH-HHHHHcCcc
Confidence 44555555554 3 89999999432 236667777655554 66667676788875544444343334 333333222
Q ss_pred --cccEEEEeeC
Q psy7545 170 --LSDVFSPLSI 179 (235)
Q Consensus 170 --~sd~~~pl~~ 179 (235)
.....+-|+.
T Consensus 140 ~~~~gV~V~f~~ 151 (323)
T cd00411 140 SRGRGVLVVFND 151 (323)
T ss_pred cCCCeEEEEECC
Confidence 3466676654
No 44
>COG2893 ManX Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]
Probab=30.85 E-value=86 Score=25.14 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=27.2
Q ss_pred HHHHHHhhhhhcccccCeeEeeCCCCCC-chhhHhhhHHH
Q psy7545 91 WTDKVRSFVEECDCLQGFQILSDATGGF-GGLCASSLQHL 129 (235)
Q Consensus 91 i~d~IRk~~E~CD~lqGF~i~~s~~GGt-sG~~s~lle~L 129 (235)
+.+.+...++.-|+=+|+.++.|+-||+ .-.+++++..-
T Consensus 45 l~~~~~~~~~~~d~~eevl~ltDl~GGSP~N~A~~l~~~~ 84 (143)
T COG2893 45 LTKQIAAAIAALDSGEGVLFLTDLFGGSPFNVASRLAMEG 84 (143)
T ss_pred HHHHHHHHHhhcCCCCcEEEEEecCCCCHhHHHHHHHhhC
Confidence 3344444455555558999999999999 77777776543
No 45
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=30.34 E-value=2.5e+02 Score=25.65 Aligned_cols=67 Identities=12% Similarity=0.102 Sum_probs=40.9
Q ss_pred hHHHHHHhhhhhcccccCeeEeeCCCCCCchhhHhhhHHHHhhcCCcccceeeeeCCCCCccchhhhhhhhhh
Q psy7545 90 DWTDKVRSFVEECDCLQGFQILSDATGGFGGLCASSLQHLKDEYSTKSCLVFPVIPPQTLESNFKLRNVNTAL 162 (235)
Q Consensus 90 ~i~d~IRk~~E~CD~lqGF~i~~s~~GGtsG~~s~lle~L~dey~k~~~~~~~v~p~~~~~~~~~~~~yN~~L 162 (235)
.+-+.|+...+ ..+||.|+|-.+ |=-.++..|..+-+. +|-.+++=+-.|.....++.....++++.
T Consensus 66 ~la~~I~~~~~---~~dG~VVtHGTD--Tme~TA~~Ls~~l~~-~kPVVlTGsmrp~~~~~sDg~~NL~~Al~ 132 (336)
T TIGR00519 66 EIAEAVKKEYD---DYDGFVITHGTD--TMAYTAAALSFMLET-PKPVVFTGAQRSSDRPSSDAALNLLCAVR 132 (336)
T ss_pred HHHHHHHHHHh---cCCeEEEccCCc--hHHHHHHHHHHHcCC-CCCEEEECCCCCCCCcCcchHHHHHHHHH
Confidence 45555555554 389999999432 236677777755444 66667677788875544444444444443
No 46
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=30.13 E-value=1.5e+02 Score=28.16 Aligned_cols=84 Identities=11% Similarity=0.080 Sum_probs=52.2
Q ss_pred hhHHHHHHhhhhhcccccCeeEeeCCCCCCchhhHhhhHHHHhhcCCcccceeeeeCCCCCccchhhhhhhhhhhHhhhh
Q psy7545 89 EDWTDKVRSFVEECDCLQGFQILSDATGGFGGLCASSLQHLKDEYSTKSCLVFPVIPPQTLESNFKLRNVNTALFFASLS 168 (235)
Q Consensus 89 e~i~d~IRk~~E~CD~lqGF~i~~s~~GGtsG~~s~lle~L~dey~k~~~~~~~v~p~~~~~~~~~~~~yN~~Lsl~~l~ 168 (235)
..+-+.|++.++. ..+||.|+|-.+ |=-.++..|..+- ..+|-.+++=+..|...++++.....++++.... .
T Consensus 139 ~~La~~I~~~~~~--~~dGvVVtHGTD--TM~yTA~aLs~~l-~~~kPVVlTGAqrp~~~~~sDa~~NL~~Av~~A~--~ 211 (419)
T PRK04183 139 VEIAEAVYEEIKN--GADGVVVAHGTD--TMHYTAAALSFML-KTPVPIVFVGAQRSSDRPSSDAAMNLICAVLAAT--S 211 (419)
T ss_pred HHHHHHHHHHhhc--cCCeEEEecCCc--hHHHHHHHHHHhc-CCCCCEEEeCCCCCCCCCCchHHHHHHHHHHHHh--C
Confidence 3455556665553 589999999432 3467777776555 5677777777888876655555555555544333 3
Q ss_pred hcccEEEEeeC
Q psy7545 169 ELSDVFSPLSI 179 (235)
Q Consensus 169 e~sd~~~pl~~ 179 (235)
..+...+.|..
T Consensus 212 ~~~gV~Vvf~g 222 (419)
T PRK04183 212 DIAEVVVVMHG 222 (419)
T ss_pred CCCcEEEEECC
Confidence 44566666653
No 47
>PF13544 N_methyl_2: Type IV pilin N-term methylation site GFxxxE; PDB: 3SOK_A 2HIL_L 1AY2_A 2PIL_A 2HI2_A 1OQW_A.
Probab=26.54 E-value=34 Score=20.02 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=4.9
Q ss_pred cccCcchhHHHHHHH
Q psy7545 3 TRYNPKSFNLIQEYQ 17 (235)
Q Consensus 3 ~~~~~~~~~~~e~~~ 17 (235)
.+-++.||.++|.+-
T Consensus 9 ~~~~~~GFTLiEllV 23 (31)
T PF13544_consen 9 RRRRQRGFTLIELLV 23 (31)
T ss_dssp ---------HHHHHH
T ss_pred cccccCCccHHHHHH
Confidence 456789999999864
No 48
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=25.19 E-value=1.8e+02 Score=24.10 Aligned_cols=81 Identities=20% Similarity=0.210 Sum_probs=38.9
Q ss_pred hhHHHHHHhhhhhcccccCeeEe-eCCCCCCchhhHhhhHHHHhhcCCcccceeeeeCCCCCccchhhhhhhhhhhHhhh
Q psy7545 89 EDWTDKVRSFVEECDCLQGFQIL-SDATGGFGGLCASSLQHLKDEYSTKSCLVFPVIPPQTLESNFKLRNVNTALFFASL 167 (235)
Q Consensus 89 e~i~d~IRk~~E~CD~lqGF~i~-~s~~GGtsG~~s~lle~L~dey~k~~~~~~~v~p~~~~~~~~~~~~yN~~Lsl~~l 167 (235)
..+.+.|+.++|+ |+.-+ ....-|+--.++.++-.|+.+||...+ ..+.|..... ..-.+ ..-.-+..+
T Consensus 29 ~~L~~~i~~lie~-----G~~~fi~GgalG~D~waae~vl~LK~~yp~ikL--~~v~Pf~~q~-~~W~~--~~q~~y~~i 98 (177)
T PF06908_consen 29 KALKKQIIELIEE-----GVRWFITGGALGVDLWAAEVVLELKKEYPEIKL--ALVLPFENQG-NNWNE--ANQERYQSI 98 (177)
T ss_dssp HHHHHHHHHHHTT-----T--EEEE---TTHHHHHHHHHHTTTTT-TT-EE--EEEESSB-TT-TTS-H--HHHHHHHHH
T ss_pred HHHHHHHHHHHHC-----CCCEEEECCcccHHHHHHHHHHHHHhhhhheEE--EEEEcccchh-hcCCH--HHHHHHHHH
Confidence 4555566666664 54433 322333435577777789999996543 5677764321 11000 112233445
Q ss_pred hhcccEEEEeeC
Q psy7545 168 SELSDVFSPLSI 179 (235)
Q Consensus 168 ~e~sd~~~pl~~ 179 (235)
.+.||.++.++.
T Consensus 99 l~~aD~v~~vs~ 110 (177)
T PF06908_consen 99 LEQADFVVVVSE 110 (177)
T ss_dssp HHH-SEEEESSS
T ss_pred HHhCCEEEEccC
Confidence 556666666654
No 49
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=20.62 E-value=81 Score=25.09 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=19.0
Q ss_pred CCCchhhHhhhHHHHhhcCC-cccc
Q psy7545 116 GGFGGLCASSLQHLKDEYST-KSCL 139 (235)
Q Consensus 116 GGtsG~~s~lle~L~dey~k-~~~~ 139 (235)
|--||+|..+.+.|+.++|. ..++
T Consensus 7 GQGGGiG~~iv~~lr~~~~~~~eI~ 31 (131)
T PF12953_consen 7 GQGGGIGKQIVEKLRKELPEEVEII 31 (131)
T ss_pred CCCChhHHHHHHHHHHhCCCCcEEE
Confidence 33389999999999999998 4443
Done!