RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7545
(235 letters)
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex,
bacterial tubulin, cytoskeleton, polymerization,
verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter
dejongeii}
Length = 426
Score = 53.2 bits (128), Expect = 2e-08
Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 9/99 (9%)
Query: 48 MRTRYHPKSFNLIQEYQHENSSQPFDCYLQGGEVWKSELMTEDWTDKVRSFVEECDCLQG 107
M + +++++ ++ ++G + + + + + S VE+ LQG
Sbjct: 82 MSQLFDES--SIVRKIPGAANNWARGYNVEGEK------VIDQIMNVIDSAVEKTKGLQG 133
Query: 108 FQILSDATGGFG-GLCASSLQHLKDEYSTKSCLVFPVIP 145
F + GG G GL + L+ L+ Y K F V+P
Sbjct: 134 FLMTHSIGGGSGSGLGSLILERLRQAYPKKRIFTFSVVP 172
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase,
microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
{Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A*
3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A*
3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A*
2wbe_A* 3dco_A* ...
Length = 451
Score = 52.8 bits (127), Expect = 2e-08
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 75 YLQGGEVWKSELMTEDWTDKVRSFVEECDCLQGFQILSDATGGFG-GLCASSLQHLKDEY 133
Y G E+ + D++R ++C LQGF + GG G G + ++ L +Y
Sbjct: 108 YTIGKEII------DLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDY 161
Query: 134 STKSCLVFPVIP 145
KS L F + P
Sbjct: 162 GKKSKLEFSIYP 173
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase,
microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
{Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B*
3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B*
1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B*
1sa0_B* 1sa1_B* ...
Length = 445
Score = 52.1 bits (125), Expect = 4e-08
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 75 YLQGGEVWKSELMTEDWTDKVRSFVEECDCLQGFQILSDATGGFG-GLCASSLQHLKDEY 133
Y +G E+ S L D VR E CDCLQGFQ+ GG G G+ + +++EY
Sbjct: 106 YTEGAELVDSVL------DVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEY 159
Query: 134 STKSCLVFPVIP 145
+ F V+P
Sbjct: 160 PDRIMNTFSVMP 171
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton,
protein COM cytoskeletal protein; HET: GTP; 2.5A
{Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB:
2btq_A*
Length = 473
Score = 50.9 bits (122), Expect = 9e-08
Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 9/95 (9%)
Query: 52 YHPKSFNLIQEYQHENSSQPFDCYLQGGEVWKSELMTEDWTDKVRSFVEECDCLQGFQIL 111
++P + E N + G E + + ++ +++CD + G +L
Sbjct: 89 FNPANLISRTEGAGGNFAV--GYLGAGRE------VLPEVMSRLDYEIDKCDNVGGIIVL 140
Query: 112 SDATGGFG-GLCASSLQHLKDEYSTKSCLVFPVIP 145
GG G G A ++ LK++Y L V+P
Sbjct: 141 HAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLP 175
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule,
nucleation, GTPase, lateral interaction, structural
protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB:
1z5v_A* 1z5w_A*
Length = 475
Score = 50.9 bits (122), Expect = 9e-08
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 17/105 (16%)
Query: 75 YLQGGEVWKSELMTEDWTDKVRSFVEECDCLQGFQILSDATGGFG-GLCASSLQHLKDEY 133
+ QG ++ + D + + D L+GF + GG G GL + L+ L D Y
Sbjct: 108 FSQGEKIHEDIF------DIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRY 161
Query: 134 STKSCLVFPVIPPQTLESNFKLRNV-----NTALFFASLSELSDV 173
K + V P + ++ +V N+ L L++ +D
Sbjct: 162 PKKLVQTYSVFP-----NQDEMSDVVVQPYNSLLTLKRLTQNADC 201
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 2e-05
Identities = 36/243 (14%), Positives = 74/243 (30%), Gaps = 66/243 (27%)
Query: 10 FNLIQEYQHENSSQPFDCYLQDCKNYQLEESVKYWSDFMRTRYH-----PKSFNLIQEYQ 64
F + Q E + + L+ NY F+ + P + Q
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLR--INY----------KFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 65 HE---NSSQPFDCYLQGGEVWKSELMTEDWTDKVRSFVEECDCLQGFQILSDATGGFGGL 121
+ N +Q F Y V + + K+R + E + +L D G G
Sbjct: 116 RDRLYNDNQVFAKY----NVSRLQPYL-----KLRQALLELRPAKN--VLIDGVLGSG-- 162
Query: 122 CASSLQHLKDEYSTKSCLVFPVIPPQTLESNF-------KLRNVNTA-LFFASLSELSDV 173
K+ + V ++ L+N N+ L +L
Sbjct: 163 --------------KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL-- 206
Query: 174 FSPLSISSDCWNQTETYRKFPYMEYNVRECIMKELNNSAYLECL----N-RTKESLNPI- 227
I + ++++ ++++ + + L + Y CL N + ++ N
Sbjct: 207 ---YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263
Query: 228 IGC 230
+ C
Sbjct: 264 LSC 266
Score = 41.0 bits (95), Expect = 2e-04
Identities = 33/228 (14%), Positives = 67/228 (29%), Gaps = 45/228 (19%)
Query: 33 KNYQLE-ESVKYW-SDFMRTRYHPKSFNLIQEYQHENSSQPFD--CYLQGGEVWKSELMT 88
N +L S++ ++++ + ++ Q+ + F+ C K L T
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC--------KILLTT 272
Query: 89 EDWTDKVRSFVEECDCLQGFQI-LSDATGGFG-----GLCASSLQHLKDEYSTKSCLVFP 142
+ + I L + L L + + P
Sbjct: 273 RF-----KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 143 ----VIP------PQTLESNFKLRN---VNTAL--FFASLS--ELSDVFSPLSI-SSDCW 184
+I T + N+K N + T + L E +F LS+
Sbjct: 328 RRLSIIAESIRDGLATWD-NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 185 NQTETYRKF-PYMEYNVRECIMKELNNSAYLECLNRTKESLNPIIGCY 231
T + + ++ +L+ + +E + KES I Y
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK--QPKESTISIPSIY 432
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent
O-methyltransferase; HET: SAH; 1.80A {Lolium perenne}
PDB: 3p9i_A* 3p9k_A*
Length = 364
Score = 34.4 bits (79), Expect = 0.023
Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 4/57 (7%)
Query: 85 ELMTEDWTDKVRSFVEECDCLQGFQILSDATGGFGGLCASSLQHLKDEYSTKSCLVF 141
E M + +E +G L D GG G + + Y T + F
Sbjct: 179 EGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGAT----VAAIAAHYPTIKGVNF 231
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.090
Identities = 46/264 (17%), Positives = 66/264 (25%), Gaps = 117/264 (44%)
Query: 7 PKSFNLIQEYQHENSSQPFDCYLQDCKNYQLEESVKYWSDFMRTRYHPKSFNLIQEYQHE 66
P S LI Q Y+ K + P
Sbjct: 235 PISCPLIGVIQ-------LAHYVVTAKLLG---------------FTPGELR-------- 264
Query: 67 NSSQPFDCYLQGGEVWKSELMT----------EDWTDKVRSFVEE-----CDCLQGF--- 108
YL+G L+T E + VR + C + +
Sbjct: 265 -------SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT 317
Query: 109 ----QILSDA-TGGFG---------GLCASSLQ--------HLKDEYSTKSCLV-----F 141
IL D+ G L +Q HL + LV
Sbjct: 318 SLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL 377
Query: 142 PVI--PPQTLES-NFKLRNV--------NTALFFASLSE----LSDVFSPLSISSDCWNQ 186
V+ PPQ+L N LR + F SE S+ F L ++S
Sbjct: 378 -VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF----SERKLKFSNRF--LPVAS----- 425
Query: 187 TETYRKF--PYMEYNVRECIMKEL 208
F + + I K+L
Sbjct: 426 -----PFHSHLLV-PASDLINKDL 443
Score = 30.4 bits (68), Expect = 0.54
Identities = 24/180 (13%), Positives = 47/180 (26%), Gaps = 64/180 (35%)
Query: 23 QPFDCYLQDCKNYQLEE---SVKYWSDFMRTRYHPKSFNLIQEYQHENSSQPFDCYLQGG 79
+P + + D +E + F+ + + + FD
Sbjct: 43 EPTEGFAAD------DEPTTPAELVGKFL-------GY--VSSLVEPSKVGQFD------ 81
Query: 80 EVWKSELMTEDWTDKVRSFVEECDCLQG-------FQILSDATGGFGGLCASSLQHLKDE 132
+V L F E L+G ++L + + + +K+
Sbjct: 82 QVLNLCL---------TEF--ENCYLEGNDIHALAAKLLQENDTTL----VKTKELIKNY 126
Query: 133 YSTKSCLVFPVIPPQTLESNFKLRNVNT------ALF---------FASLSELSDVFSPL 177
+ + P S R V A+F F L +L + L
Sbjct: 127 ITARIMAKRPFDKKS--NSAL-FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL 183
>2wxy_C Angiotensinogen, serpin A8; glycoprotein, hypertension,
vasoconstrictor, renin, serpins, vasoactive, hormone;
2.10A {Mus musculus} PDB: 2wxx_A 2wy0_C 2wxz_A 2wxz_C
2wy1_A
Length = 453
Score = 30.8 bits (70), Expect = 0.37
Identities = 9/91 (9%), Positives = 28/91 (30%), Gaps = 10/91 (10%)
Query: 101 ECDCLQGFQILSDATGGF--GGLCASSLQHLKDEYSTKSCLVFPVIPPQTLESNFKLRNV 158
C L+ + + F + A + + + L + + + ++ +
Sbjct: 17 TCAQLENPSVETLPESTFEPVPIQAKTSPVNEKTLHDQLVLAAEKLEDEDRKRAAQVAMI 76
Query: 159 NTAL---FFASLSELSD-----VFSPLSISS 181
+ + L+E + SP ++
Sbjct: 77 TNFVGFRMYKMLNEAGSGASGAILSPPALFG 107
>2wxw_A Angiotensinogen, serpin A8; glycoprotein, hypertension,
vasoconstrictor, renin, serpins, vasoactive, hormone;
3.30A {Homo sapiens} PDB: 2x0b_B
Length = 453
Score = 28.9 bits (65), Expect = 1.5
Identities = 12/78 (15%), Positives = 23/78 (29%), Gaps = 9/78 (11%)
Query: 113 DATGGFGGLCASSLQHLKDEYSTKSCLVFPVIPPQTLESNFKLRNVNTAL---FFASLSE 169
D T + A + + + LV + + + + L + SE
Sbjct: 32 DPTFIPAPIQAKTSPVDEKALQDQLVLVAAKLDTEDKLRAAMVGMLANFLGFRIYGMHSE 91
Query: 170 LSD------VFSPLSISS 181
L V SP ++
Sbjct: 92 LWGVVHGATVLSPTAVFG 109
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 2.1
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 10/27 (37%)
Query: 30 QDCKNYQLEESVKYWSDFMRTRYHPKS 56
Q K +L+ S+K Y S
Sbjct: 20 QALK--KLQASLKL--------YADDS 36
Score = 26.8 bits (58), Expect = 5.0
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 15/36 (41%)
Query: 147 QTLESNFKLRNVNTALFFASLSELSDVFSP-LSISS 181
+ L+++ KL +A S +P L+I +
Sbjct: 23 KKLQASLKL--------YADDS------APALAIKA 44
>2zxt_A Maltose-binding periplasmic protein, linker, MITO intermembrane
space import AND...; disulfide bond, alpha helix,
fusion, sugar transport; HET: MAL; 3.00A {Escherichia
coli}
Length = 465
Score = 28.3 bits (63), Expect = 2.8
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 38 EESVKYWSDFMRTRYHPKSFNLIQEYQHENSSQPFDCYLQGGEVWKSELM-TED 90
EE +S F+ + PK + ++++QH DC+ + E + +L T D
Sbjct: 409 EEFKSAFSCFVYSEAEPKGIDCVEKFQHMQ-----DCFRKYPEHYAEQLKETSD 457
>1m9z_A TGF-beta receptor type II; three finger toxin fold, hormone-growth
factor complex; 1.05A {Homo sapiens} SCOP: g.7.1.3 PDB:
1plo_A 1ktz_B 2pjy_B
Length = 111
Score = 26.2 bits (57), Expect = 6.0
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 177 LSISSDCWNQTETYRKFPYMEYNVRECIMKELNNS 211
+++ + C + Y F + CIMKE
Sbjct: 47 ITLETVCHDPKLPYHDFILEDAASPTCIMKEKKKP 81
>2oay_A C1-inhibitor, plasma protease C1 inhibitor, C1 INH, C1INH; latent
serpin, RCL insertion, immune system,hydrolase inhibi;
HET: NAG; 2.35A {Homo sapiens}
Length = 390
Score = 26.8 bits (60), Expect = 6.2
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 11/58 (18%)
Query: 135 TKSCLVFPVIPPQTLESNFKLRNVNTAL------FFASLSELSD-----VFSPLSISS 181
T S PV LES+ + AL + + S + FSP SI+S
Sbjct: 9 TGSFCPGPVTLCSDLESHSTEAVLGDALVDFSLKLYHAFSAMKKVETNMAFSPFSIAS 66
>3kcg_I Antithrombin-III, ATIII; michaelis complex, blood coagulation,
calcium, disulfide bond, EGF-like domain, glycoprotein,
hemophilia, hydrolase; HET: NAG FUC MAN NTP; 1.70A {Homo
sapiens} PDB: 1e04_I* 1ath_A 1ant_L* 1br8_L 1azx_I*
1dzh_L* 1e03_L* 1dzg_L* 1e05_L* 1jvq_L* 1lk6_L* 1nq9_I*
1oyh_L* 1r1l_L* 1sr5_A* 2ant_L* 2beh_L* 2hij_L* 2znh_A*
3evj_I* ...
Length = 432
Score = 26.9 bits (60), Expect = 6.2
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 8/46 (17%)
Query: 144 IPPQTLESNFKLRNVNTALFFASLSELSD--------VFSPLSISS 181
IP T ++L N+ L+D SPLSIS+
Sbjct: 40 IPEATNRRVWELSKANSRFATTFYQHLADSKNDNDNIFLSPLSIST 85
>1ks6_A Transforming growth factor beta type II receptor; three finger
toxin fold, hormone/growth factor complex; NMR {Gallus
gallus} SCOP: g.7.1.3
Length = 107
Score = 25.8 bits (56), Expect = 6.4
Identities = 5/35 (14%), Positives = 16/35 (45%)
Query: 177 LSISSDCWNQTETYRKFPYMEYNVRECIMKELNNS 211
+++ + C + + + + +C+MKE +
Sbjct: 50 VTLETICHDPQKRLYGHMLDDSSSEQCVMKEKKDD 84
>3ne4_A Alpha-1-antitrypsin; serpin, LUNG disease, liver disease,
polymerisation, hydrolase inhibitor; 1.81A {Homo
sapiens} PDB: 1qlp_A 2qug_A 3cwl_A 3cwm_A* 1psi_A 3drm_A
1kct_A 3dru_A 1hp7_A 1iz2_A* 1oph_A 1oo8_A 1atu_A 1d5s_B
1qmb_B
Length = 424
Score = 26.9 bits (60), Expect = 6.9
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 8/70 (11%)
Query: 120 GLCASSLQHLKDEYSTKSCLVFPVI-PPQTLESNFKLRNVNTALFFASLSELSD------ 172
GLC L ++ + Q + K+ F+ +L+
Sbjct: 20 GLCCLVPVSLAEDPQGDAAQKTDTSHHDQDHPTFNKITPNLAEFAFSLYRQLAHQSNSTN 79
Query: 173 -VFSPLSISS 181
FSP+SI++
Sbjct: 80 IFFSPVSIAT 89
>1yxa_A Serine (OR cysteine) proteinase inhibitor, clade 3N; serpin,
antichymotrypsin, protease inhibitor, reactive centr
plasma, hydrolase inhibitor; 2.10A {Mus musculus}
Length = 398
Score = 26.8 bits (60), Expect = 7.0
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 145 PPQTLESNFKLRNVNTALFFASLSELSD-------VFSPLSISS 181
T + L ++NT F+ EL VFSPLSIS+
Sbjct: 17 DNGTQLDSLTLASINTDFAFSLYKELVLKNPDTNIVFSPLSISA 60
>3kfd_E TGF-beta receptor type-2; TGF-beta recepto tbrii, TBRI, growth
factor, serine/threonine-PROT kinase, cytokine-cytokine
receptor complex; 3.00A {Homo sapiens}
Length = 116
Score = 25.8 bits (56), Expect = 7.3
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 177 LSISSDCWNQTETYRKFPYMEYNVRECIMKELNNS 211
+++ + C + Y F + +CIMKE
Sbjct: 58 ITLETVCHDPKLPYHDFILEDAASPKCIMKEKKKP 92
>3f1s_A Protein Z-dependent protease inhibitor; PZ, ZPI, complex, serpin,
protease inhibitor, protease, GLYC secreted, serine
protease inhibitor, blood coagulation; HET: FLC NAG;
2.30A {Homo sapiens} PDB: 3h5c_A*
Length = 385
Score = 26.8 bits (60), Expect = 7.6
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 6/43 (13%)
Query: 145 PPQTLESNFKLRNVNTALFFASLSELSD------VFSPLSISS 181
+ S +L + F+ L ++S VFSP +S
Sbjct: 6 KAWLMASRQQLAKETSNFGFSLLRKISMRHDGNMVFSPFGMSL 48
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding,
transferase, nucleotide-binding; HET: SEP; 1.6A {Homo
sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A*
2bva_A*
Length = 321
Score = 26.6 bits (59), Expect = 7.6
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 61 QEYQHENSSQPFDCYLQGGEVW 82
++YQH N + + YL G E+W
Sbjct: 97 RDYQHFNVVEMYKSYLVGEELW 118
>3nda_A Serpin-2; vaccination target, TICK, hydrolase inhibitor; HET: 1PE;
1.80A {Ixodes ricinus}
Length = 377
Score = 26.8 bits (60), Expect = 7.7
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 6/39 (15%)
Query: 149 LESNFKLRNVNTALFFASLSELSD------VFSPLSISS 181
++ KL N L L FSP S+S+
Sbjct: 1 MQEEAKLTKANNRFGLRLLRALPSGPEKNVFFSPYSVST 39
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding,
phosphorylation, allosteric enzyme, alternative
splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A
{Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A*
1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Length = 297
Score = 26.5 bits (59), Expect = 8.7
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 61 QEYQHENSSQPFDCYLQGGEVW 82
+E ++ N D YL G E+W
Sbjct: 72 RENKNPNIVNYLDSYLVGDELW 93
>1jmo_A HC-II, heparin cofactor II, HLS2, serin; serpin, thrombin,
protease, inhibition, inhibitor, blood CLO; HET: TYS NDG
NAG; 2.20A {Homo sapiens} SCOP: e.1.1.1 PDB: 1jmj_A*
Length = 480
Score = 26.6 bits (59), Expect = 8.8
Identities = 18/122 (14%), Positives = 37/122 (30%), Gaps = 15/122 (12%)
Query: 68 SSQPFDCYLQGGEVWKSELMTEDWTDKVRSFVEECDCLQGFQILSDATGGFGGLCASSLQ 127
+++ L + K +T DW + EE D + + + + S
Sbjct: 27 NNKNLSMPLLPADFHKENTVTNDWIPEG----EEDDDYLDLEKIFSEDDDYIDIVDSLSV 82
Query: 128 HLKDEYSTKSCLVFPVIPPQTLESNFKLRNVNTALFFASLSELSD--------VFSPLSI 179
D + ++ ++ L +N F L D +P+ I
Sbjct: 83 SPTDSDVSAGNILQLFHGKSRIQR---LNILNAKFAFNLYRVLKDQVNTFDNIFIAPVGI 139
Query: 180 SS 181
S+
Sbjct: 140 ST 141
>3ndd_A Alpha-1-antitrypsin; serpin, hydrolase inhibitor; 1.50A {Homo
sapiens} PDB: 3ndf_A 7api_A* 8api_A* 9api_A* 1d5s_A
1ezx_A 3t1p_A 2d26_A 1qmb_A
Length = 343
Score = 26.4 bits (59), Expect = 9.1
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 7/43 (16%)
Query: 146 PQTLESNFKLRNVNTALFFASLSELSD-------VFSPLSISS 181
LE+ K+ F+ +L+ FSP+SI++
Sbjct: 2 SHMLETFNKITPNLAEFAFSLYRQLAHQSNSTNIFFSPVSIAT 44
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.423
Gapped
Lambda K H
0.267 0.0669 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,394,614
Number of extensions: 177332
Number of successful extensions: 491
Number of sequences better than 10.0: 1
Number of HSP's gapped: 484
Number of HSP's successfully gapped: 36
Length of query: 235
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 144
Effective length of database: 4,160,982
Effective search space: 599181408
Effective search space used: 599181408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.5 bits)