RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7545
         (235 letters)



>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa)
           [TaxId: 9823]}
          Length = 243

 Score = 53.4 bits (128), Expect = 2e-09
 Identities = 36/128 (28%), Positives = 54/128 (42%), Gaps = 10/128 (7%)

Query: 47  FMRTRYHPKSFNLIQEYQHENSSQPFDCYLQGGEVWKSELMTEDWTDKVRSFVEECDCLQ 106
                + P +F   Q     N ++    Y +G E+  S L      D VR   E CDCLQ
Sbjct: 80  PFGQIFRPDNFVFGQSGAGNNWAK--GHYTEGAELVDSVL------DVVRKESESCDCLQ 131

Query: 107 GFQILSDATGGFG-GLCASSLQHLKDEYSTKSCLVFPVIPPQTLESNFKLRNVNTALFFA 165
           GFQ+     GG G G+    +  +++EY  +    F V+P   + S+  +   N  L   
Sbjct: 132 GFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKV-SDTVVEPYNATLSVH 190

Query: 166 SLSELSDV 173
            L E +D 
Sbjct: 191 QLVENTDE 198


>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa)
           [TaxId: 9823]}
          Length = 245

 Score = 52.3 bits (125), Expect = 6e-09
 Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 10/126 (7%)

Query: 49  RTRYHPKSFNLIQEYQHENSSQPFDCYLQGGEVWKSELMTEDWTDKVRSFVEECDCLQGF 108
           R  +HP+     +E    N ++    +   G+     ++     D++R   ++C  LQGF
Sbjct: 84  RQLFHPEQLITGKEDAANNYAR---GHYTIGKEIIDLVL-----DRIRKLADQCTGLQGF 135

Query: 109 QILSDATGGFGGLCASSL-QHLKDEYSTKSCLVFPVIPPQTLESNFKLRNVNTALFFASL 167
            +     GG G    S L + L  +Y  KS L F + P   + +   +   N+ L   + 
Sbjct: 136 SVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA-VVEPYNSILTTHTT 194

Query: 168 SELSDV 173
            E SD 
Sbjct: 195 LEHSDC 200


>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter
           dejongeii [TaxId: 48465]}
          Length = 244

 Score = 46.9 bits (111), Expect = 4e-07
 Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 10/127 (7%)

Query: 48  MRTRYHPKSFNLIQEYQHENSSQPFDCYLQGGEVWKSELMTEDWTDKVRSFVEECDCLQG 107
             + ++P +     E    N        +      +   +  +   ++   +++CD + G
Sbjct: 83  SGSLFNPANLISRTEGAGGN------FAVGYLGAGRE--VLPEVMSRLDYEIDKCDNVGG 134

Query: 108 FQILSDATGGFGGLCASSL-QHLKDEYSTKSCLVFPVIPPQTLESNFKLRNVNTALFFAS 166
             +L    GG G    + L + LK++Y     L   V+P   + S       NT     +
Sbjct: 135 IIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQVSSVV-TEPYNTVFALNT 193

Query: 167 LSELSDV 173
           L   +D 
Sbjct: 194 LRRSADA 200


>d2b5ti1 e.1.1.1 (I:6-431) Antithrombin {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 426

 Score = 27.1 bits (59), Expect = 1.8
 Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 8/46 (17%)

Query: 144 IPPQTLESNFKLRNVNTALFFASLSELSD--------VFSPLSISS 181
           IP  T    ++L   N+         L+D          SPLSIS+
Sbjct: 35  IPEATNRRVWELSKANSRFATTFYQHLADSKNDNDNIFLSPLSIST 80


>d1ks6a_ g.7.1.3 (A:) TGF-beta type II receptor extracellular domain
           {Chicken (Gallus gallus) [TaxId: 9031]}
          Length = 107

 Score = 25.6 bits (56), Expect = 2.4
 Identities = 5/31 (16%), Positives = 15/31 (48%)

Query: 177 LSISSDCWNQTETYRKFPYMEYNVRECIMKE 207
           +++ + C +  +        + +  +C+MKE
Sbjct: 50  VTLETICHDPQKRLYGHMLDDSSSEQCVMKE 80


>d1m9za_ g.7.1.3 (A:) TGF-beta type II receptor extracellular domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 105

 Score = 25.6 bits (56), Expect = 2.5
 Identities = 8/31 (25%), Positives = 14/31 (45%)

Query: 177 LSISSDCWNQTETYRKFPYMEYNVRECIMKE 207
           +++ + C +    Y  F   +     CIMKE
Sbjct: 47  ITLETVCHDPKLPYHDFILEDAASPTCIMKE 77


>d1phpa_ c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 394

 Score = 26.1 bits (57), Expect = 3.8
 Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 2/84 (2%)

Query: 151 SNFKLRNVNTALFFASLSELSDVFSPLSISSDCWNQTETYRKFPYMEYNVRECIMKELNN 210
             +     N      + +EL+D++   +  +       T     Y+       + KEL  
Sbjct: 118 RFYPGEEKNDPELAKAFAELADLYVNDAFGAAHRAHASTEGIAHYLPAVAGFLMEKELE- 176

Query: 211 SAYLECLNRTKESLNPIIGCYKCY 234
               + L+        IIG  K  
Sbjct: 177 -VLGKALSNPDRPFTAIIGGAKVK 199


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.423 

Gapped
Lambda     K      H
   0.267   0.0566    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 880,127
Number of extensions: 38902
Number of successful extensions: 139
Number of sequences better than 10.0: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 10
Length of query: 235
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 152
Effective length of database: 1,268,006
Effective search space: 192736912
Effective search space used: 192736912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.8 bits)