BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7546
(150 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|307185703|gb|EFN71619.1| Heterogeneous nuclear ribonucleoprotein K [Camponotus floridanus]
Length = 143
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 76/139 (54%), Positives = 96/139 (69%), Gaps = 19/139 (13%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTI 68
S KR+R G D ELRLLIPS+VAGS+IGKGG NI +LR+ +KAS+ VPDCPGPER+LTI
Sbjct: 18 SPHKRYRQG--DDELRLLIPSKVAGSIIGKGGQNITKLRSQYKASIIVPDCPGPERVLTI 75
Query: 69 FAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQS 128
++L L+V+ EV+P L+E R + G G D+ D+R++VHQS
Sbjct: 76 SSDLPTVLQVLNEVVPNLEETRFQNGSRHGS-----------------DEIDVRMLVHQS 118
Query: 129 QAGCIIGKGGTKIKELRDT 147
QAGCIIGKGG KIKELR+
Sbjct: 119 QAGCIIGKGGLKIKELREV 137
>gi|328702411|ref|XP_003241892.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 2
[Acyrthosiphon pisum]
Length = 428
Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 79/136 (58%), Positives = 100/136 (73%), Gaps = 5/136 (3%)
Query: 11 FKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
FKR + GP+D+ELR+LIPS+VAGS+IGKGG NI+RLR D+ A+VTVPDCPGPERILTI +
Sbjct: 15 FKRPKMGPDDIELRVLIPSKVAGSIIGKGGFNISRLRTDYNATVTVPDCPGPERILTIIS 74
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+N LKV+ EV+ L++ G R G G G G+ D D+R++VHQSQA
Sbjct: 75 SNDNALKVLGEVMGNLED-----GGSRFKRGGAGGGQGNNDNQGGETDVDVRMLVHQSQA 129
Query: 131 GCIIGKGGTKIKELRD 146
GCIIGKGG K+KELR+
Sbjct: 130 GCIIGKGGLKVKELRE 145
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 24 RLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV--PDCPGPERILTIFAELENGLKVIEE 81
++ IP +AG++IGK G+ I R+R D A +T+ P ERI+TI NG +
Sbjct: 350 QVTIPKDLAGAIIGKAGARIRRIRQDSGAGITIGEPTEGSDERIITI-----NGTD--SQ 402
Query: 82 VLPALDEIRQKYGKGRGGEDGGDGY 106
+ A ++Q + G GGDG+
Sbjct: 403 IQMAQYLLQQCVQAQKPGGPGGDGF 427
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 114 LGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
+G DD ++R+++ AG IIGKGG I LR ++A
Sbjct: 20 MGPDDIELRVLIPSKVAGSIIGKGGFNISRLRTDYNA 56
>gi|328702409|ref|XP_001943097.2| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 1
[Acyrthosiphon pisum]
gi|328702413|ref|XP_003241893.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 3
[Acyrthosiphon pisum]
Length = 426
Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 79/136 (58%), Positives = 100/136 (73%), Gaps = 5/136 (3%)
Query: 11 FKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
FKR + GP+D+ELR+LIPS+VAGS+IGKGG NI+RLR D+ A+VTVPDCPGPERILTI +
Sbjct: 13 FKRPKMGPDDIELRVLIPSKVAGSIIGKGGFNISRLRTDYNATVTVPDCPGPERILTIIS 72
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+N LKV+ EV+ L++ G R G G G G+ D D+R++VHQSQA
Sbjct: 73 SNDNALKVLGEVMGNLED-----GGSRFKRGGAGGGQGNNDNQGGETDVDVRMLVHQSQA 127
Query: 131 GCIIGKGGTKIKELRD 146
GCIIGKGG K+KELR+
Sbjct: 128 GCIIGKGGLKVKELRE 143
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 24 RLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV--PDCPGPERILTIFAELENGLKVIEE 81
++ IP +AG++IGK G+ I R+R D A +T+ P ERI+TI NG +
Sbjct: 348 QVTIPKDLAGAIIGKAGARIRRIRQDSGAGITIGEPTEGSDERIITI-----NGTD--SQ 400
Query: 82 VLPALDEIRQKYGKGRGGEDGGDGY 106
+ A ++Q + G GGDG+
Sbjct: 401 IQMAQYLLQQCVQAQKPGGPGGDGF 425
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 114 LGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
+G DD ++R+++ AG IIGKGG I LR ++A
Sbjct: 18 MGPDDIELRVLIPSKVAGSIIGKGGFNISRLRTDYNA 54
>gi|383849051|ref|XP_003700160.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Megachile rotundata]
Length = 460
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/142 (52%), Positives = 96/142 (67%), Gaps = 23/142 (16%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTI 68
S KR+R G D ELRLLIPS+VAGS+IGKGG NI +LR+ +KAS+ VPDCPGPER+LTI
Sbjct: 37 SPHKRYRQG--DDELRLLIPSKVAGSIIGKGGQNITKLRSQYKASIIVPDCPGPERVLTI 94
Query: 69 FAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQS 128
++L L+V+ EV+P L+E ++ G D+ D+R++VHQS
Sbjct: 95 SSDLPTVLQVLNEVVPNLEENGSRH---------------------GSDEIDVRMLVHQS 133
Query: 129 QAGCIIGKGGTKIKELRDTFDA 150
QAGCIIGKGG KIKELR+ A
Sbjct: 134 QAGCIIGKGGLKIKELREKTGA 155
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 4/55 (7%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTI 68
G N ++ IP +AG++IGKGG+ I ++R+D A +T+ D P P +RI+TI
Sbjct: 382 GSNKTSTQVTIPKDLAGAIIGKGGARIRKIRSDSGAGITI-DEPLPGSNDRIITI 435
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 15 RGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERILTIFAE 71
R G +++++R+L+ AG +IGKGG I LR A + + CP +R+++I +
Sbjct: 118 RHGSDEIDVRMLVHQSQAGCIIGKGGLKIKELREKTGARIKIYSHCCPHSTDRLISICGK 177
Query: 72 LENGLKVIEEVLPAL 86
+ I E++ +
Sbjct: 178 PSTCIDCIRELIATI 192
>gi|307204634|gb|EFN83256.1| Heterogeneous nuclear ribonucleoprotein K [Harpegnathos saltator]
Length = 139
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/139 (53%), Positives = 95/139 (68%), Gaps = 23/139 (16%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTI 68
S KR+R G D ELRLLIPS+VAGS+IGKGG NI +LR+ +KAS+ VPDCPGPER+LTI
Sbjct: 18 SPHKRYRQG--DDELRLLIPSKVAGSIIGKGGQNITKLRSQYKASIIVPDCPGPERVLTI 75
Query: 69 FAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQS 128
++L L+V+ EV+P L+E ++ G D+ D+R++VHQS
Sbjct: 76 SSDLPTVLQVLNEVVPNLEENGSRH---------------------GSDEIDVRMLVHQS 114
Query: 129 QAGCIIGKGGTKIKELRDT 147
QAGCIIGKGG KIKELR+
Sbjct: 115 QAGCIIGKGGLKIKELREV 133
>gi|328781397|ref|XP_392536.4| PREDICTED: heterogeneous nuclear ribonucleoprotein K [Apis
mellifera]
Length = 482
Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 74/138 (53%), Positives = 95/138 (68%), Gaps = 23/138 (16%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTI 68
S KR+R G D ELRLLIPS+VAGS+IGKGG NI +LR+ +KAS+ VPDCPGPER+LTI
Sbjct: 72 SPHKRYRQG--DDELRLLIPSKVAGSIIGKGGQNITKLRSQYKASIIVPDCPGPERVLTI 129
Query: 69 FAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQS 128
++L L+V+ EV+P L+E ++ G D+ D+R++VHQS
Sbjct: 130 SSDLPTVLQVLNEVVPNLEENGSRH---------------------GSDEIDVRMLVHQS 168
Query: 129 QAGCIIGKGGTKIKELRD 146
QAGCIIGKGG KIKELR+
Sbjct: 169 QAGCIIGKGGLKIKELRE 186
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 15 RGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERILTIFAE 71
R G +++++R+L+ AG +IGKGG I LR A + + CP +R+++I +
Sbjct: 153 RHGSDEIDVRMLVHQSQAGCIIGKGGLKIKELREKTGARIKIYSHCCPHSTDRLISICGK 212
Query: 72 LENGLKVIEEVLPAL 86
++ I E++ +
Sbjct: 213 PTTCIECIRELIATI 227
>gi|350409768|ref|XP_003488838.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Bombus
impatiens]
Length = 439
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/142 (52%), Positives = 96/142 (67%), Gaps = 23/142 (16%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTI 68
S KR+R G D ELRLLIPS+VAGS+IGKGG NI +LR+ +KAS+ VPDCPGPER+LTI
Sbjct: 65 SPHKRYRQG--DDELRLLIPSKVAGSIIGKGGQNITKLRSQYKASIIVPDCPGPERVLTI 122
Query: 69 FAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQS 128
++L L+V+ EV+P L+E ++ G D+ D+R++VHQS
Sbjct: 123 SSDLPTVLQVLNEVVPNLEENGSRH---------------------GSDEIDVRMLVHQS 161
Query: 129 QAGCIIGKGGTKIKELRDTFDA 150
QAGCIIGKGG KIKELR+ A
Sbjct: 162 QAGCIIGKGGLKIKELREKTGA 183
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 15 RGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERILTIFAE 71
R G +++++R+L+ AG +IGKGG I LR A + + CP +R+++I +
Sbjct: 146 RHGSDEIDVRMLVHQSQAGCIIGKGGLKIKELREKTGARIKIYSHCCPHSTDRLISICGK 205
Query: 72 LENGLKVIEEVLPAL 86
++ I E++ +
Sbjct: 206 PNTCIECIRELIATI 220
>gi|332027896|gb|EGI67951.1| Heterogeneous nuclear ribonucleoprotein K [Acromyrmex echinatior]
Length = 172
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/139 (52%), Positives = 94/139 (67%), Gaps = 23/139 (16%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTI 68
S KR+R G D ELRLLIPS+VAGS+IGKGG NI +LR+ +KAS+ VPDCPGPER+LTI
Sbjct: 18 SPHKRYRQG--DDELRLLIPSKVAGSIIGKGGQNITKLRSQYKASIIVPDCPGPERVLTI 75
Query: 69 FAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQS 128
++L L+V+ EV+P L+E ++ G D+ D+R++VHQS
Sbjct: 76 SSDLPTVLQVLNEVVPNLEENGSRH---------------------GSDEIDVRMLVHQS 114
Query: 129 QAGCIIGKGGTKIKELRDT 147
QAGCIIGK G KIKELR+
Sbjct: 115 QAGCIIGKAGLKIKELREV 133
>gi|340718655|ref|XP_003397779.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Bombus
terrestris]
Length = 466
Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats.
Identities = 74/138 (53%), Positives = 95/138 (68%), Gaps = 23/138 (16%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTI 68
S KR+R G D ELRLLIPS+VAGS+IGKGG NI +LR+ +KAS+ VPDCPGPER+LTI
Sbjct: 51 SPHKRYRQG--DDELRLLIPSKVAGSIIGKGGQNITKLRSQYKASIIVPDCPGPERVLTI 108
Query: 69 FAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQS 128
++L L+V+ EV+P L+E ++ G D+ D+R++VHQS
Sbjct: 109 SSDLPTVLQVLNEVVPNLEENGSRH---------------------GSDEIDVRMLVHQS 147
Query: 129 QAGCIIGKGGTKIKELRD 146
QAGCIIGKGG KIKELR+
Sbjct: 148 QAGCIIGKGGLKIKELRE 165
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 24 RLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV--PDCPGPERILTI 68
++ IP +AG++IGKGG+ I ++R+D A +T+ P +RI+TI
Sbjct: 395 QVTIPKDLAGAIIGKGGARIRKVRSDSGAGITIDEPLSGSNDRIITI 441
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 15 RGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERILTIFAE 71
R G +++++R+L+ AG +IGKGG I LR A + + CP +R+++I +
Sbjct: 132 RHGSDEIDVRMLVHQSQAGCIIGKGGLKIKELREKTGARIKIYSHCCPHSTDRLISICGK 191
Query: 72 LENGLKVIEEVLPAL 86
++ I E++ +
Sbjct: 192 PNTCIECIRELIATI 206
>gi|189238821|ref|XP_968538.2| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein k
[Tribolium castaneum]
gi|270010156|gb|EFA06604.1| hypothetical protein TcasGA2_TC009519 [Tribolium castaneum]
Length = 414
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/139 (50%), Positives = 95/139 (68%), Gaps = 23/139 (16%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAE 71
KR R G D E+RLLIPS+VAGS+IGKGG NI +LR+ +KAS+TVPDCPGPER+LT+ ++
Sbjct: 14 KRSRRG--DEEVRLLIPSKVAGSIIGKGGQNITKLRSQYKASITVPDCPGPERMLTLSSD 71
Query: 72 LENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAG 131
L+ ++ +V+P L+E NGG V G ++ D+R+++HQSQAG
Sbjct: 72 LDTICNIVTDVVPNLEE------------------NGGRVNG---NELDLRMMIHQSQAG 110
Query: 132 CIIGKGGTKIKELRDTFDA 150
C+IGK G KIKELR+ A
Sbjct: 111 CVIGKAGYKIKELREKTGA 129
Score = 35.0 bits (79), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPE---RILTIFAELENG 75
N+++LR++I AG VIGK G I LR A + + P+ RI+ I E
Sbjct: 96 NELDLRMMIHQSQAGCVIGKAGYKIKELREKTGARIKIFSNVAPQSTDRIIQIVGEPSKC 155
Query: 76 LKVIEEVL 83
+ I E++
Sbjct: 156 VDSIREII 163
>gi|242024312|ref|XP_002432572.1| heterogeneous nuclear ribonucleoprotein k, putative [Pediculus
humanus corporis]
gi|212518032|gb|EEB19834.1| heterogeneous nuclear ribonucleoprotein k, putative [Pediculus
humanus corporis]
Length = 365
Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 70/139 (50%), Positives = 91/139 (65%), Gaps = 30/139 (21%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAE 71
KR++ + E+RLLIPS+VAGS+IGKGG NI++LR + ASVTVPDCPGPERILT+ A+
Sbjct: 15 KRYKNSDGN-EIRLLIPSKVAGSIIGKGGHNISKLRTEHNASVTVPDCPGPERILTVAAD 73
Query: 72 LENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAG 131
L+ L+V+ E+LP L+++ DIR++VHQSQAG
Sbjct: 74 LDTMLRVVSEILPNLEDV-----------------------------IDIRMLVHQSQAG 104
Query: 132 CIIGKGGTKIKELRDTFDA 150
CIIGKGG KIKELR+ A
Sbjct: 105 CIIGKGGLKIKELREKTGA 123
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 34/48 (70%), Gaps = 4/48 (8%)
Query: 24 RLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTI 68
++ IP +AG++IGKGGS I ++R + A++T+ D P P +RI+TI
Sbjct: 294 QVTIPKDLAGAIIGKGGSRIRKIRMESGAAITI-DEPLPGSNDRIITI 340
>gi|321455064|gb|EFX66209.1| hypothetical protein DAPPUDRAFT_332423 [Daphnia pulex]
Length = 384
Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 88/128 (68%), Gaps = 16/128 (12%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
D ELRLL+ S+VAGS+IGKGGSNI++LR + A++ +PDCPGPERILTI L+ + V+
Sbjct: 32 DTELRLLVYSKVAGSIIGKGGSNISKLRTENHATILLPDCPGPERILTIQGNLDAVINVL 91
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ VLP+L+E+ K RG G G D D RL+VHQSQ GCIIG+GG
Sbjct: 92 QNVLPSLEEV----SKIRGERTGRVG------------DSDARLLVHQSQIGCIIGRGGA 135
Query: 140 KIKELRDT 147
K+KELR++
Sbjct: 136 KVKELRES 143
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 32/45 (71%), Gaps = 4/45 (8%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTI 68
IP +AG++IGKGG+ I ++R D AS+T+ D P P ERI+TI
Sbjct: 313 IPKDLAGAIIGKGGARIRKIRGDSGASITI-DEPRPGSTERIITI 356
>gi|427784321|gb|JAA57612.1| Putative polyc-binding hnrnp-k protein hrb57a/hnrnp [Rhipicephalus
pulchellus]
Length = 334
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 93/142 (65%), Gaps = 14/142 (9%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTI 68
S R GG V++R L+ SR AG++IGKGGSNI LR +FKAS++VPDCPGPERIL+I
Sbjct: 26 SKRPRNTGGGRAVDVRFLLQSRNAGAIIGKGGSNINSLRKEFKASISVPDCPGPERILSI 85
Query: 69 FAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQS 128
A+L+ +++ ++P LD+ ++ + G NGG + ++RL++HQS
Sbjct: 86 VADLDTLGEILLNIIPKLDDRSMQFAQ-------HTGQNGG-------SESEMRLLMHQS 131
Query: 129 QAGCIIGKGGTKIKELRDTFDA 150
AGCIIG+ G +IKELR++ A
Sbjct: 132 HAGCIIGRAGCRIKELRESTGA 153
>gi|346473549|gb|AEO36619.1| hypothetical protein [Amblyomma maculatum]
Length = 320
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 88/138 (63%), Gaps = 18/138 (13%)
Query: 13 RFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
R GG V++R L+ SR AG++IGKGG+NI LR +FKAS++VPDCPGPERIL+I A+L
Sbjct: 31 RNSGGGRAVDVRFLLQSRNAGAIIGKGGTNINSLRKEFKASISVPDCPGPERILSIVADL 90
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
+ ++ ++P LD+ Q G+ G E ++RL++HQS AGC
Sbjct: 91 DTLGDILLNIIPKLDDFAQHTGQNGGSES------------------EMRLLMHQSHAGC 132
Query: 133 IIGKGGTKIKELRDTFDA 150
IIG+ G +IKELR++ A
Sbjct: 133 IIGRAGCRIKELRESTGA 150
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 4 FIQQLSNFKRFRG--GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV--PDC 59
I +L +F + G G ++ E+RLL+ AG +IG+ G I LR A++ V C
Sbjct: 100 IIPKLDDFAQHTGQNGGSESEMRLLMHQSHAGCIIGRAGCRIKELRESTGANIKVHGSCC 159
Query: 60 PGP-ERILTIFAELENGLKVIEEVL 83
PG ERI+ + + I+++
Sbjct: 160 PGSTERIVKVTGSPAVVVDCIKQIC 184
>gi|443685583|gb|ELT89137.1| hypothetical protein CAPTEDRAFT_171528 [Capitella teleta]
Length = 398
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 93/137 (67%), Gaps = 22/137 (16%)
Query: 11 FKRFRG-GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIF 69
K+ RG GPN VELR+L+ S+ AG++IGKGG+NI RLR+D+ A+VTVPD GPER+LT+
Sbjct: 16 LKKTRGEGPN-VELRILLQSKNAGAIIGKGGANIKRLRSDYNATVTVPDSSGPERVLTVG 74
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
A L L+++ +V+P+L++ Y + + E + ++R ++HQSQ
Sbjct: 75 ANLGTALEILLDVIPSLED----YKRFKDLEF----------------ECEMRWLIHQSQ 114
Query: 130 AGCIIGKGGTKIKELRD 146
AGC+IG+GG KIKELRD
Sbjct: 115 AGCVIGRGGNKIKELRD 131
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP-- 62
I L ++KRF+ + E+R LI AG VIG+GG+ I LR++ A + V P
Sbjct: 88 IPSLEDYKRFKDLEFECEMRWLIHQSQAGCVIGRGGNKIKELRDETGAQIKVYSQCAPQS 147
Query: 63 -ERILTIFAE---LENGLKVIEEVL 83
ERI+ + + + N L I ++L
Sbjct: 148 SERIVQLTGKPRVVVNSLATIFDLL 172
>gi|405957027|gb|EKC23265.1| Heterogeneous nuclear ribonucleoprotein K [Crassostrea gigas]
Length = 594
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 85/137 (62%), Gaps = 24/137 (17%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAE 71
KR RG VELR L+ S+ AG++IGKGGSNI RLR D+KASVTVPD PER+LTI A
Sbjct: 69 KRRRGDGPKVELRFLLASKNAGAIIGKGGSNIKRLRQDYKASVTVPDSTSPERVLTIGAN 128
Query: 72 LENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYD--IRLIVHQSQ 129
L L+ + +++P L++ + +D+D +RL+VHQSQ
Sbjct: 129 LGTALECVLDIIPKLEDYKN----------------------YKNNDFDCEMRLLVHQSQ 166
Query: 130 AGCIIGKGGTKIKELRD 146
AGCIIG+ G KIKELR+
Sbjct: 167 AGCIIGRAGFKIKELRE 183
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 4 FIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP- 60
I +L ++K ++ D E+RLL+ AG +IG+ G I LR A + V CP
Sbjct: 139 IIPKLEDYKNYKNNDFDCEMRLLVHQSQAGCIIGRAGFKIKELRERTGAQIKVYSQCCPE 198
Query: 61 GPERILTI 68
ER++ I
Sbjct: 199 STERVVAI 206
>gi|260814700|ref|XP_002602052.1| hypothetical protein BRAFLDRAFT_127356 [Branchiostoma floridae]
gi|229287357|gb|EEN58064.1| hypothetical protein BRAFLDRAFT_127356 [Branchiostoma floridae]
Length = 499
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 60/133 (45%), Positives = 87/133 (65%), Gaps = 16/133 (12%)
Query: 18 PNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLK 77
P V+LR+L+ S+ AG++IGK G NI RLR+++KA+VTVPDC GPERILTI A+L
Sbjct: 40 PPPVDLRILLQSKNAGAIIGKQGLNIKRLRSEYKATVTVPDCTGPERILTISADLNTACA 99
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKG 137
+ +++P L++ ++ Y E +N ++R++VHQSQAGCIIG+
Sbjct: 100 CLLDIIPVLEDYQKHY-----QEHKDLNFNC-----------ELRMLVHQSQAGCIIGRA 143
Query: 138 GTKIKELRDTFDA 150
G KIKELR+ +A
Sbjct: 144 GFKIKELREQTEA 156
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 14 FRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTI 68
F G N ++ IP +AGS+IG+GGS I +R +A + + D P P +RI+TI
Sbjct: 401 FGTGGNITSTQVTIPKELAGSIIGRGGSRIRTIRERSEAQIKI-DEPLPGSTDRIITI 457
Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDC-PGP-ERILTIFAELENGL 76
+ ELR+L+ AG +IG+ G I LR +A++ V +C PG ER++ + + E +
Sbjct: 124 NCELRMLVHQSQAGCIIGRAGFKIKELREQTEANIKVYSECMPGSTERVVALTGKPEKCV 183
Query: 77 KVIEEVLPALDE 88
I++++ L +
Sbjct: 184 GAIKKIIELLQK 195
>gi|223649086|gb|ACN11301.1| Heterogeneous nuclear ribonucleoprotein K [Salmo salar]
Length = 440
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 89/142 (62%), Gaps = 20/142 (14%)
Query: 6 QQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERI 65
++ +FKR R + VELR+L+ S+ AG+VIGKGG NI LR DF ASV+VPD GPERI
Sbjct: 29 EEEQSFKRSRNTDDMVELRILLQSKNAGAVIGKGGKNIKSLRTDFNASVSVPDSSGPERI 88
Query: 66 LTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIV 125
L+I AE+E +++ +++P L+E +Q YNG D ++RL++
Sbjct: 89 LSISAEIETVGEILLKIIPTLEEYQQ--------------YNGMDF------DCELRLLI 128
Query: 126 HQSQAGCIIGKGGTKIKELRDT 147
HQS AG IIG G KIKELR+
Sbjct: 129 HQSLAGSIIGVKGAKIKELREN 150
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 4 FIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP- 60
I L ++++ G D ELRLLI +AGS+IG G+ I LR + + S+ + CP
Sbjct: 105 IIPTLEEYQQYNGMDFDCELRLLIHQSLAGSIIGVKGAKIKELRENTQTSIKLFQECCPQ 164
Query: 61 GPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
+R++ + + E +V+E + L+ I + KGR
Sbjct: 165 STDRVVLVGGKSE---RVVECIKIMLELIAEAPIKGRA 199
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 9/62 (14%)
Query: 15 RGGPND-----VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERIL 66
RG ND + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+
Sbjct: 354 RGSYNDMGGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRII 412
Query: 67 TI 68
TI
Sbjct: 413 TI 414
>gi|387915114|gb|AFK11166.1| heterogeneous nuclear ribonucleoprotein K [Callorhinchus milii]
Length = 436
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 90/138 (65%), Gaps = 10/138 (7%)
Query: 11 FKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
FKR R VELRLL+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPERIL+I A
Sbjct: 38 FKRSRNNDQCVELRLLLQSKNAGAVIGKGGKNIKSLRTDYNASVSVPDSSGPERILSINA 97
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKD-DYDIRLIVHQSQ 129
++E ++ +++P L+E+R + ++ Y GKD D ++R++VHQSQ
Sbjct: 98 DIETIGDILSKIIPTLEEVRCVHFHHL--QESYQHYK-------GKDFDCELRMLVHQSQ 148
Query: 130 AGCIIGKGGTKIKELRDT 147
AG IIG G KIKELR++
Sbjct: 149 AGSIIGVKGVKIKELRES 166
Score = 35.4 bits (80), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 3 FFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP 60
F +++ ++G D ELR+L+ AGS+IG G I LR + ++ + CP
Sbjct: 120 HFHHLQESYQHYKGKDFDCELRMLVHQSQAGSIIGVKGVKIKELRESTQTTIKLFQECCP 179
Query: 61 -GPERILTIFAELENGLKVIEEVLPALDE 88
+R++ + + + ++ I+ ++ L E
Sbjct: 180 HSTDRVVLLGGKPDRVVECIKIIMGLLSE 208
Score = 35.0 bits (79), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
+ ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 362 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 411
>gi|157108094|ref|XP_001650073.1| heterogeneous nuclear ribonucleoprotein k [Aedes aegypti]
gi|108868581|gb|EAT32806.1| AAEL014959-PA [Aedes aegypti]
Length = 430
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 85/132 (64%), Gaps = 25/132 (18%)
Query: 15 RGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELEN 74
R ++ E+RLLIPS++AG++IGK G NI +LR +++A V V DC GPER+LTI ++E
Sbjct: 32 RSRKDEEEVRLLIPSKMAGAIIGKAGHNIQKLRTEYQAQVNVGDCTGPERVLTIGGDMET 91
Query: 75 GLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCII 134
V+++V+ LD+ G+++Y++R++VHQS AGC+I
Sbjct: 92 ITNVVKDVMKHLDK-------------------------AGENEYELRILVHQSLAGCVI 126
Query: 135 GKGGTKIKELRD 146
G+GGTKIKEL+D
Sbjct: 127 GRGGTKIKELKD 138
Score = 35.0 bits (79), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 87 DEIRQKYGKGRGGEDGGDGYNGGGVGGLG-KDDYDIRLIVHQSQAGCIIGKGGTKIKELR 145
+E Q + G D D + + KD+ ++RL++ AG IIGK G I++LR
Sbjct: 5 NEENQDSDQHHDGSDNADTSDKKPMNKRSRKDEEEVRLLIPSKMAGAIIGKAGHNIQKLR 64
Query: 146 DTFDA 150
+ A
Sbjct: 65 TEYQA 69
>gi|348517286|ref|XP_003446165.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Oreochromis niloticus]
Length = 435
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 87/137 (63%), Gaps = 20/137 (14%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIF 69
+FKR R VELR+L+ S+ AG+VIGKGG NI LR D+KASV+VPD GPERIL+I
Sbjct: 32 SFKRSRNSDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYKASVSVPDSSGPERILSIS 91
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
A++E +++ +++P L+E +Q YNG D ++RL++HQS
Sbjct: 92 ADIETVGEILLKIIPTLEEYQQ--------------YNGMDF------DCELRLLIHQSL 131
Query: 130 AGCIIGKGGTKIKELRD 146
AG IIG G KIKELR+
Sbjct: 132 AGSIIGVKGAKIKELRE 148
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 4 FIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP- 60
I L ++++ G D ELRLLI +AGS+IG G+ I LR + K S+ + CP
Sbjct: 104 IIPTLEEYQQYNGMDFDCELRLLIHQSLAGSIIGVKGAKIKELRENTKTSIKLFQECCPQ 163
Query: 61 GPERILTIFAELENGLKVIEEVLPALDE 88
+R++ + + E ++ I+ +L + E
Sbjct: 164 STDRVVLVGGKTERVVECIKTMLELISE 191
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 9/62 (14%)
Query: 15 RGGPND-----VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERIL 66
RG ND + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+
Sbjct: 349 RGSYNDMGGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRII 407
Query: 67 TI 68
TI
Sbjct: 408 TI 409
>gi|209732160|gb|ACI66949.1| Heterogeneous nuclear ribonucleoprotein K [Salmo salar]
gi|209738672|gb|ACI70205.1| Heterogeneous nuclear ribonucleoprotein K [Salmo salar]
gi|303665667|gb|ADM16193.1| Heterogeneous nuclear ribonucleoprotein K [Salmo salar]
Length = 165
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 86/137 (62%), Gaps = 20/137 (14%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIF 69
++KR R + VELR+L+ S+ AG+VIGKGG NI LR DF ASV+VPD GPERIL+I
Sbjct: 33 SYKRSRNTEDMVELRILLQSKNAGAVIGKGGKNIKSLRTDFNASVSVPDSSGPERILSIG 92
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
AE+E ++ +++P L+E +Q YNG D ++RL++HQS
Sbjct: 93 AEIETVGDILLKIIPTLEEYQQ--------------YNGMDF------DCELRLLIHQSL 132
Query: 130 AGCIIGKGGTKIKELRD 146
AG IIG G KIKELR+
Sbjct: 133 AGSIIGVKGAKIKELRE 149
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 4 FIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
I L ++++ G D ELRLLI +AGS+IG G+ I LR + + ++ V
Sbjct: 105 IIPTLEEYQQYNGMDFDCELRLLIHQSLAGSIIGVKGAKIKELRENTQTNIPV 157
Score = 35.4 bits (80), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 116 KDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
+D ++R+++ AG +IGKGG IK LR F+A
Sbjct: 41 EDMVELRILLQSKNAGAVIGKGGKNIKSLRTDFNA 75
>gi|324505572|gb|ADY42393.1| Heterogeneous nuclear ribonucleoprotein K [Ascaris suum]
Length = 415
Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 84/125 (67%), Gaps = 14/125 (11%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEE 81
ELRLL+PSR AG+VIGKGG +I RLR + A++T+PD PERI+TI AE++N ++ + E
Sbjct: 106 ELRLLVPSRGAGAVIGKGGESIKRLRAECDATLTIPDSQTPERIVTIVAEIDNVIRCVNE 165
Query: 82 VLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKI 141
++P LDE K R +D G + + ++RL+VHQS AG IIG+GG +I
Sbjct: 166 IIPRLDECL----KTRDSDDEGS----------ARGESELRLLVHQSHAGAIIGRGGYRI 211
Query: 142 KELRD 146
KELR+
Sbjct: 212 KELRE 216
Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 24 RLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPGPERILTI---FAELENGLKVI 79
++ IP+ + G++IGKGG I R+R + A + V P P ERI+TI A+++ ++
Sbjct: 339 QVTIPNELGGTIIGKGGERINRIREESGAHIVVEPQQPNSERIITISGSHAQIQTAQYLL 398
Query: 80 EEVL 83
++ +
Sbjct: 399 QQCV 402
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 94 GKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
G G DGY L Y++RL+V AG +IGKGG IK LR DA
Sbjct: 84 GYATGKRQRADGYQEA----LAAGKYELRLLVPSRGAGAVIGKGGESIKRLRAECDA 136
>gi|324518489|gb|ADY47116.1| Heterogeneous nuclear ribonucleoprotein K [Ascaris suum]
gi|324519835|gb|ADY47493.1| Heterogeneous nuclear ribonucleoprotein K, partial [Ascaris suum]
Length = 361
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 84/125 (67%), Gaps = 14/125 (11%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEE 81
ELRLL+PSR AG+VIGKGG +I RLR + A++T+PD PERI+TI AE++N ++ + E
Sbjct: 39 ELRLLVPSRGAGAVIGKGGESIKRLRAECDATLTIPDSQTPERIVTIVAEIDNVIRCVNE 98
Query: 82 VLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKI 141
++P LDE K R +D G + + ++RL+VHQS AG IIG+GG +I
Sbjct: 99 IIPRLDECL----KTRDSDDEGS----------ARGESELRLLVHQSHAGAIIGRGGYRI 144
Query: 142 KELRD 146
KELR+
Sbjct: 145 KELRE 149
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 24 RLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPGPERILTI---FAELENGLKVI 79
++ IP+ + G++IGKGG I R+R + A + V P P ERI+TI A+++ ++
Sbjct: 272 QVTIPNELGGTIIGKGGERINRIREESGAHIVVEPQQPNSERIITISGSHAQIQTAQYLL 331
Query: 80 EEVL 83
++ +
Sbjct: 332 QQWI 335
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 103 GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
DGY G Y++RL+V AG +IGKGG IK LR DA
Sbjct: 26 ADGYQEALAAG----KYELRLLVPSRGAGAVIGKGGESIKRLRAECDA 69
>gi|209148569|gb|ACI32944.1| Heterogeneous nuclear ribonucleoprotein K [Salmo salar]
Length = 443
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 86/137 (62%), Gaps = 20/137 (14%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIF 69
++KR R + VELR+L+ S+ AG+VIGKGG NI LR DF ASV+VPD GPERIL+I
Sbjct: 33 SYKRSRNTEDMVELRILLQSKNAGAVIGKGGKNIKSLRTDFNASVSVPDSSGPERILSIG 92
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
AE+E ++ +++P L+E +Q YNG D ++RL++HQS
Sbjct: 93 AEIETVGDILLKIIPTLEEYQQ--------------YNGMDF------DCELRLLIHQSL 132
Query: 130 AGCIIGKGGTKIKELRD 146
AG IIG G KIKELR+
Sbjct: 133 AGSIIGVKGAKIKELRE 149
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 4 FIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP- 60
I L ++++ G D ELRLLI +AGS+IG G+ I LR + + ++ + CP
Sbjct: 105 IIPTLEEYQQYNGMDFDCELRLLIHQSLAGSIIGVKGAKIKELRENTQTNIKLFQECCPQ 164
Query: 61 GPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGR 97
+R++ + + E +V+E + LD I + KGR
Sbjct: 165 STDRVVLVSGKSE---RVVECIKIMLDLIAEAPIKGR 198
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 364 GGPV-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 417
>gi|291221774|ref|XP_002730893.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Saccoglossus kowalevskii]
Length = 437
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 86/140 (61%), Gaps = 28/140 (20%)
Query: 12 KRFRGGPN--DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIF 69
KR +GG + V+LR+L+ S+ AG++IGKGG+NI RLR + A+VTVPDC GPERILT+
Sbjct: 37 KRTKGGGDGPKVDLRILLQSKNAGAIIGKGGNNIHRLRTQYNATVTVPDCSGPERILTVT 96
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKD---DYDIRLIVH 126
E L + +V+P L+E +Q KD D ++R++VH
Sbjct: 97 TNQETALSCLLDVIPVLEEYQQY-----------------------KDLDFDCEMRMLVH 133
Query: 127 QSQAGCIIGKGGTKIKELRD 146
QSQAG IIG+ G KIKELR+
Sbjct: 134 QSQAGAIIGRAGFKIKELRE 153
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 8 LSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPER 64
L +++++ D E+R+L+ AG++IG+ G I LR A++ V CP ER
Sbjct: 113 LEEYQQYKDLDFDCEMRMLVHQSQAGAIIGRAGFKIKELREQTGANIKVYSEVCPNSTER 172
Query: 65 ILTIFAELE---NGLKVIEEVL 83
++ + E N +++I +VL
Sbjct: 173 VVQMNGSPEVVINCMRMILDVL 194
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 7/75 (9%)
Query: 24 RLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIF---AELENGLK 77
++ IP +AGS+IGKGGS I ++R D A + + D P P +RI+TI +++N
Sbjct: 358 QVTIPKDLAGSIIGKGGSRIGQIREDSGALIKI-DEPLPGSNDRIITIKGTPEQIQNAQY 416
Query: 78 VIEEVLPALDEIRQK 92
+++ + A +Q+
Sbjct: 417 LLQNRVRASQSYQQQ 431
>gi|432873594|ref|XP_004072294.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Oryzias
latipes]
Length = 433
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 87/137 (63%), Gaps = 20/137 (14%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIF 69
+FKR R VELR+L+ S+ AG+VIGKGG NI LR+D+ ASV+VPD GPERIL+I
Sbjct: 32 SFKRSRNSDEMVELRILLQSKNAGAVIGKGGKNIKALRSDYNASVSVPDSSGPERILSIS 91
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
A++E +++ +++P L+E +Q YNG D ++RL++HQS
Sbjct: 92 ADIETVGEILLKIIPTLEEYQQ--------------YNGMDF------DCELRLLIHQSL 131
Query: 130 AGCIIGKGGTKIKELRD 146
AG IIG G KIKELR+
Sbjct: 132 AGSIIGVKGAKIKELRE 148
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 4 FIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP- 60
I L ++++ G D ELRLLI +AGS+IG G+ I LR + K S+ + CP
Sbjct: 104 IIPTLEEYQQYNGMDFDCELRLLIHQSLAGSIIGVKGAKIKELRENTKTSIKLFQECCPQ 163
Query: 61 GPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGR 97
+R++ + + E +V+E V L+ I + KGR
Sbjct: 164 STDRVVLVGGKSE---RVVECVKTMLELISEAPIKGR 197
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 354 GGPV-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 407
>gi|392873506|gb|AFM85585.1| heterogeneous nuclear ribonucleoprotein K [Callorhinchus milii]
Length = 424
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 84/137 (61%), Gaps = 20/137 (14%)
Query: 11 FKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
FKR R VELRLL+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPERIL+I A
Sbjct: 38 FKRSRNNDQCVELRLLLQSKNAGAVIGKGGKNIKSLRTDYNASVSVPDSSGPERILSINA 97
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
++E ++ +++P L+E + GK D ++R++VHQSQA
Sbjct: 98 DIETIGDILSKIVPTLEEYQHYKGKDF--------------------DCELRMLVHQSQA 137
Query: 131 GCIIGKGGTKIKELRDT 147
G IIG G KIKELR++
Sbjct: 138 GSIIGVKGVKIKELRES 154
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 4 FIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP- 60
+ L ++ ++G D ELR+L+ AGS+IG G I LR + ++ + CP
Sbjct: 109 IVPTLEEYQHYKGKDFDCELRMLVHQSQAGSIIGVKGVKIKELRESTQTTIKLFQECCPH 168
Query: 61 GPERILTIFAELENGLKVIEEVLPALDE 88
+R++ + + + ++ I+ ++ L E
Sbjct: 169 STDRVVLLGGKPDRVVECIKIIMGLLSE 196
Score = 35.4 bits (80), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 346 GGPV-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 399
>gi|158293805|ref|XP_315123.4| AGAP005015-PA [Anopheles gambiae str. PEST]
gi|157016622|gb|EAA10478.5| AGAP005015-PA [Anopheles gambiae str. PEST]
Length = 447
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 85/136 (62%), Gaps = 27/136 (19%)
Query: 11 FKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
KR R + E+RLLIPS++AG++IGKGG NI +LR +++A V V DC GPER+LTI
Sbjct: 48 VKRMR--SEEQEVRLLIPSKMAGAIIGKGGHNIQKLRTEYQAQVNVGDCTGPERVLTIGG 105
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
++E KV+++V+ LD G ++Y++R+++H S A
Sbjct: 106 DMETVTKVVKDVMKHLDR-------------------------AGDNEYELRILIHLSLA 140
Query: 131 GCIIGKGGTKIKELRD 146
GC+IG+GG+KIKE++D
Sbjct: 141 GCVIGRGGSKIKEIKD 156
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 15 RGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPE---RILTIFAE 71
R G N+ ELR+LI +AG VIG+GGS I ++++ + + P+ RI +
Sbjct: 123 RAGDNEYELRILIHLSLAGCVIGRGGSKIKEIKDEIGCRLKIFSNIPPQSTDRIAQVIGS 182
Query: 72 LENGLKVIEEVL 83
E LK + E++
Sbjct: 183 EEQCLKTLNEII 194
>gi|387018122|gb|AFJ51179.1| Heterogeneous nuclear ribonucleoprotein K-like [Crotalus
adamanteus]
Length = 426
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 87/142 (61%), Gaps = 20/142 (14%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
I++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 24 IEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 83
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLI 124
IL+I A++E +++++++P L+E + Y G D ++RL+
Sbjct: 84 ILSISADIETIGEILKKIIPTLEEYQH--------------YKGSDF------DCELRLL 123
Query: 125 VHQSQAGCIIGKGGTKIKELRD 146
+HQS AG IIG G KIKELR+
Sbjct: 124 IHQSLAGGIIGVKGAKIKELRE 145
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 4 FIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP- 60
I L ++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP
Sbjct: 101 IIPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPH 160
Query: 61 GPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
+R++ I + + +V+E + LD I + KGR
Sbjct: 161 SSDRVVLIGGKPD---RVVECIKIILDLISESPIKGRA 195
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 346 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 399
>gi|6006748|gb|AAF00596.1|AF142631_1 hnRNP K protein homolog [Drosophila melanogaster]
Length = 490
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 82/128 (64%), Gaps = 26/128 (20%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKV 78
N+ +R+LIPS +AG+VIGKGG +I ++R +KA+V+V D GPER + I A++E+ L++
Sbjct: 21 NEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDSQGPERTIQISADIESTLEI 80
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
I E+L KY + R +D+D+RL++HQS AGC+IGKGG
Sbjct: 81 ITEML--------KYFEER------------------DEDFDVRLLIHQSLAGCVIGKGG 114
Query: 139 TKIKELRD 146
KIKE+RD
Sbjct: 115 QKIKEIRD 122
>gi|194881635|ref|XP_001974928.1| GG22043 [Drosophila erecta]
gi|190658115|gb|EDV55328.1| GG22043 [Drosophila erecta]
Length = 498
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 82/128 (64%), Gaps = 26/128 (20%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKV 78
N+ +R+LIPS +AG+VIGKGG +I ++R +KA+V+V D GPER + I A++E+ L++
Sbjct: 21 NEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDSQGPERTIQISADIESTLEI 80
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
I E+L KY + R +D+D+RL++HQS AGC+IGKGG
Sbjct: 81 ITEML--------KYFEER------------------DEDFDVRLLIHQSLAGCVIGKGG 114
Query: 139 TKIKELRD 146
KIKE+RD
Sbjct: 115 QKIKEIRD 122
>gi|195486812|ref|XP_002091665.1| GE12124 [Drosophila yakuba]
gi|194177766|gb|EDW91377.1| GE12124 [Drosophila yakuba]
Length = 497
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 82/128 (64%), Gaps = 26/128 (20%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKV 78
N+ +R+LIPS +AG+VIGKGG +I ++R +KA+V+V D GPER + I A++E+ L++
Sbjct: 21 NEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDSQGPERTIQISADIESTLEI 80
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
I E+L KY + R +D+D+RL++HQS AGC+IGKGG
Sbjct: 81 ITEML--------KYFEER------------------DEDFDVRLLIHQSLAGCVIGKGG 114
Query: 139 TKIKELRD 146
KIKE+RD
Sbjct: 115 QKIKEIRD 122
>gi|410922719|ref|XP_003974830.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Takifugu
rubripes]
Length = 434
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 87/138 (63%), Gaps = 20/138 (14%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIF 69
+FKR R VELR+L+ S+ AG+VIGKGG NI LR D+KASV+VPD GPERIL+I
Sbjct: 32 SFKRSRNCDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYKASVSVPDSSGPERILSIS 91
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
A+++ +++ +++P L+E +Q Y+G D ++RL++HQS
Sbjct: 92 ADIKTVGEILLKIIPTLEEYQQ--------------YSGMDF------DCELRLLIHQSL 131
Query: 130 AGCIIGKGGTKIKELRDT 147
AG IIG G KIKELR+
Sbjct: 132 AGSIIGVKGAKIKELREN 149
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 4 FIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP- 60
I L ++++ G D ELRLLI +AGS+IG G+ I LR + K S+ + CP
Sbjct: 104 IIPTLEEYQQYSGMDFDCELRLLIHQSLAGSIIGVKGAKIKELRENTKTSIKLFQECCPQ 163
Query: 61 GPERILTIFAELENGLKVIEEVL 83
+R++ + ++E ++ I+ +L
Sbjct: 164 STDRVVLVGGKMERVVECIKTML 186
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP V ++ IP +AGS+IGKGG I ++R+D A++ + D P +RI+TI
Sbjct: 355 GGPV-VTTQVTIPKDLAGSIIGKGGQRIKQIRHDSGAAIKI-DEPLEGSEDRIITI 408
>gi|45552765|ref|NP_995907.1| bancal, isoform A [Drosophila melanogaster]
gi|442624312|ref|NP_001261102.1| bancal, isoform F [Drosophila melanogaster]
gi|21626883|gb|AAF57450.2| bancal, isoform A [Drosophila melanogaster]
gi|189182182|gb|ACD81867.1| LP16172p [Drosophila melanogaster]
gi|440214543|gb|AGB93634.1| bancal, isoform F [Drosophila melanogaster]
Length = 496
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 82/128 (64%), Gaps = 26/128 (20%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKV 78
N+ +R+LIPS +AG+VIGKGG +I ++R +KA+V+V D GPER + I A++E+ L++
Sbjct: 21 NEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDSQGPERTIQISADIESTLEI 80
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
I E+L KY + R +D+D+RL++HQS AGC+IGKGG
Sbjct: 81 ITEML--------KYFEER------------------DEDFDVRLLIHQSLAGCVIGKGG 114
Query: 139 TKIKELRD 146
KIKE+RD
Sbjct: 115 QKIKEIRD 122
>gi|195430448|ref|XP_002063267.1| GK21481 [Drosophila willistoni]
gi|194159352|gb|EDW74253.1| GK21481 [Drosophila willistoni]
Length = 505
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 83/132 (62%), Gaps = 26/132 (19%)
Query: 15 RGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELEN 74
R N+ +R+LIPS +AG+VIGKGG +I ++R +KA+V+V D GPER + I A++E+
Sbjct: 16 RNRRNEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDSQGPERTIQISADIES 75
Query: 75 GLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCII 134
L++I E+L KY + R +D+D+RL++HQS AGC+I
Sbjct: 76 TLEIITEML--------KYFEER------------------DEDFDVRLLIHQSLAGCVI 109
Query: 135 GKGGTKIKELRD 146
GKGG KIKE+RD
Sbjct: 110 GKGGQKIKEIRD 121
>gi|281363839|ref|NP_001163216.1| bancal, isoform E [Drosophila melanogaster]
gi|272432584|gb|ACZ94488.1| bancal, isoform E [Drosophila melanogaster]
Length = 493
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 82/128 (64%), Gaps = 26/128 (20%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKV 78
N+ +R+LIPS +AG+VIGKGG +I ++R +KA+V+V D GPER + I A++E+ L++
Sbjct: 21 NEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDSQGPERTIQISADIESTLEI 80
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
I E+L KY + R +D+D+RL++HQS AGC+IGKGG
Sbjct: 81 ITEML--------KYFEER------------------DEDFDVRLLIHQSLAGCVIGKGG 114
Query: 139 TKIKELRD 146
KIKE+RD
Sbjct: 115 QKIKEIRD 122
>gi|45552763|ref|NP_995906.1| bancal, isoform C [Drosophila melanogaster]
gi|45445681|gb|AAM68389.2| bancal, isoform C [Drosophila melanogaster]
gi|261338783|gb|ACX70073.1| RE05515p [Drosophila melanogaster]
Length = 502
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 82/128 (64%), Gaps = 26/128 (20%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKV 78
N+ +R+LIPS +AG+VIGKGG +I ++R +KA+V+V D GPER + I A++E+ L++
Sbjct: 27 NEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDSQGPERTIQISADIESTLEI 86
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
I E+L KY + R +D+D+RL++HQS AGC+IGKGG
Sbjct: 87 ITEML--------KYFEER------------------DEDFDVRLLIHQSLAGCVIGKGG 120
Query: 139 TKIKELRD 146
KIKE+RD
Sbjct: 121 QKIKEIRD 128
>gi|195336152|ref|XP_002034707.1| GM22026 [Drosophila sechellia]
gi|194126677|gb|EDW48720.1| GM22026 [Drosophila sechellia]
Length = 345
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 83/132 (62%), Gaps = 26/132 (19%)
Query: 15 RGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELEN 74
R N+ +R+LIPS +AG+VIGKGG +I ++R +KA+V+V D GPER + I A++E+
Sbjct: 17 RNRRNEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDSQGPERTIQISADIES 76
Query: 75 GLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCII 134
L++I E+L KY + R +D+D+RL++HQS AGC+I
Sbjct: 77 TLEIITEML--------KYFEERD------------------EDFDVRLLIHQSLAGCVI 110
Query: 135 GKGGTKIKELRD 146
GKGG KIKE+RD
Sbjct: 111 GKGGQKIKEIRD 122
>gi|195585141|ref|XP_002082349.1| GD11524 [Drosophila simulans]
gi|194194358|gb|EDX07934.1| GD11524 [Drosophila simulans]
Length = 496
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 82/128 (64%), Gaps = 26/128 (20%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKV 78
N+ +R+LIPS +AG+VIGKGG +I ++R +KA+V+V D GPER + I A++E+ L++
Sbjct: 21 NEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDSQGPERTIQISADIESTLEI 80
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
I E+L KY + R +D+D+RL++HQS AGC+IGKGG
Sbjct: 81 ITEML--------KYFEER------------------DEDFDVRLLIHQSLAGCVIGKGG 114
Query: 139 TKIKELRD 146
KIKE+RD
Sbjct: 115 QKIKEIRD 122
>gi|6687391|emb|CAB64936.1| heterogeneous nuclear ribonucleoprotein (hnRNP) [Drosophila
melanogaster]
Length = 496
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 82/128 (64%), Gaps = 26/128 (20%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKV 78
N+ +R+LIPS +AG+VIGKGG +I ++R +KA+V+V D GPER + I A++E+ L++
Sbjct: 21 NEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDSQGPERTIQISADIESTLEI 80
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
I E+L KY + R +D+D+RL++HQS AGC+IGKGG
Sbjct: 81 ITEML--------KYFEER------------------DEDFDVRLLIHQSLAGCVIGKGG 114
Query: 139 TKIKELRD 146
KIKE+RD
Sbjct: 115 QKIKEIRD 122
>gi|74225344|dbj|BAE31602.1| unnamed protein product [Mus musculus]
Length = 459
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 87/142 (61%), Gaps = 20/142 (14%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLI 124
IL+I A++E +++++++P L+E + Y G D ++RL+
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEYQH--------------YKGSDF------DCELRLL 126
Query: 125 VHQSQAGCIIGKGGTKIKELRD 146
+HQS AG IIG G KIKELR+
Sbjct: 127 IHQSLAGGIIGVKGAKIKELRE 148
Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-G 61
I L ++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP
Sbjct: 105 IPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHS 164
Query: 62 PERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
+R++ I + + +V+E + LD I + KGR
Sbjct: 165 TDRVVLIGGKPD---RVVECIKIILDLISESPIKGRA 198
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 8/81 (9%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTIFA-- 70
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 360 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITITGTQ 417
Query: 71 -ELENGLKVIEEVLPALDEIR 90
+++N +++ + ++ ++
Sbjct: 418 DQIQNAQYLLQNSVKSMQMLK 438
>gi|74198765|dbj|BAE30613.1| unnamed protein product [Mus musculus]
Length = 450
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 87/142 (61%), Gaps = 20/142 (14%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLI 124
IL+I A++E +++++++P L+E + Y G D ++RL+
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEYQH--------------YKGSDF------DCELRLL 126
Query: 125 VHQSQAGCIIGKGGTKIKELRD 146
+HQS AG IIG G KIKELR+
Sbjct: 127 IHQSLAGGIIGVKGAKIKELRE 148
Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 4 FIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP- 60
I L ++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP
Sbjct: 104 IIPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPH 163
Query: 61 GPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
+R++ I + + +V+E + LD I + KGR
Sbjct: 164 STDRVVLIGGKPD---RVVECIKIILDLISESPIKGRA 198
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 8/81 (9%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTIFA-- 70
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 360 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITITGTQ 417
Query: 71 -ELENGLKVIEEVLPALDEIR 90
+++N +++ + ++ ++
Sbjct: 418 DQIQNAQYLLQNSVKSMQMLK 438
>gi|327263405|ref|XP_003216510.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Anolis
carolinensis]
Length = 425
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 84/136 (61%), Gaps = 20/136 (14%)
Query: 11 FKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPERIL+I A
Sbjct: 30 FKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISA 89
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
++E +++++++P L+E + Y G D ++RL++HQS A
Sbjct: 90 DIETIGEILKKIIPTLEEYQH--------------YKGSDF------DCELRLLIHQSLA 129
Query: 131 GCIIGKGGTKIKELRD 146
G IIG G KIKELR+
Sbjct: 130 GGIIGVKGAKIKELRE 145
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 4 FIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP- 60
I L ++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP
Sbjct: 101 IIPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPH 160
Query: 61 GPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
+R++ I + + +V+E + LD I + KGR
Sbjct: 161 SSDRVVLIGGKPD---RVVECIKIILDLISESPIKGRA 195
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 346 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 399
>gi|119583084|gb|EAW62680.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_f [Homo
sapiens]
Length = 440
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 87/142 (61%), Gaps = 20/142 (14%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLI 124
IL+I A++E +++++++P L+E + Y G D ++RL+
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEYQH--------------YKGSDF------DCELRLL 126
Query: 125 VHQSQAGCIIGKGGTKIKELRD 146
+HQS AG IIG G KIKELR+
Sbjct: 127 IHQSLAGGIIGVKGAKIKELRE 148
Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 4 FIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP- 60
I L ++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP
Sbjct: 104 IIPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPH 163
Query: 61 GPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
+R++ I + + +V+E + LD I + KGR
Sbjct: 164 STDRVVLIGGKPD---RVVECIKIILDLISESPIKGRA 198
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 360 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 413
>gi|62088704|dbj|BAD92799.1| heterogeneous nuclear ribonucleoprotein K isoform a variant [Homo
sapiens]
Length = 442
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 87/142 (61%), Gaps = 20/142 (14%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 29 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 88
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLI 124
IL+I A++E +++++++P L+E + Y G D ++RL+
Sbjct: 89 ILSISADIETIGEILKKIIPTLEEYQH--------------YKGSDF------DCELRLL 128
Query: 125 VHQSQAGCIIGKGGTKIKELRD 146
+HQS AG IIG G KIKELR+
Sbjct: 129 IHQSLAGGIIGVKGAKIKELRE 150
Score = 42.4 bits (98), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 4 FIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP- 60
I L ++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP
Sbjct: 106 IIPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPH 165
Query: 61 GPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
+R++ I + + +V+E + LD I + KGR
Sbjct: 166 STDRVVLIGGKPD---RVVECIKIILDLISESPIKGRA 200
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 362 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 415
>gi|354500004|ref|XP_003512093.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 4
[Cricetulus griseus]
Length = 439
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 87/142 (61%), Gaps = 20/142 (14%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLI 124
IL+I A++E +++++++P L+E + Y G D ++RL+
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEYQH--------------YKGSDF------DCELRLL 126
Query: 125 VHQSQAGCIIGKGGTKIKELRD 146
+HQS AG IIG G KIKELR+
Sbjct: 127 IHQSLAGGIIGVKGAKIKELRE 148
Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 4 FIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP- 60
I L ++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP
Sbjct: 104 IIPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPH 163
Query: 61 GPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
+R++ I + + +V+E + LD I + KGR
Sbjct: 164 STDRVVLIGGKPD---RVVECIKIILDLISESPIKGRA 198
Score = 36.6 bits (83), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 360 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 413
>gi|426219907|ref|XP_004004159.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 3
[Ovis aries]
Length = 439
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 87/142 (61%), Gaps = 20/142 (14%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLI 124
IL+I A++E +++++++P L+E + Y G D ++RL+
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEYQH--------------YKGSDF------DCELRLL 126
Query: 125 VHQSQAGCIIGKGGTKIKELRD 146
+HQS AG IIG G KIKELR+
Sbjct: 127 IHQSLAGGIIGVKGAKIKELRE 148
Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 4 FIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP- 60
I L ++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP
Sbjct: 104 IIPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPQ 163
Query: 61 GPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
+R++ I + + +V+E + LD I + KGR
Sbjct: 164 STDRVVLIGGKPD---RVVECIKIILDLISESPIKGRA 198
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 360 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 413
>gi|354500002|ref|XP_003512092.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 3
[Cricetulus griseus]
Length = 440
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 87/142 (61%), Gaps = 20/142 (14%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLI 124
IL+I A++E +++++++P L+E + Y G D ++RL+
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEYQH--------------YKGSDF------DCELRLL 126
Query: 125 VHQSQAGCIIGKGGTKIKELRD 146
+HQS AG IIG G KIKELR+
Sbjct: 127 IHQSLAGGIIGVKGAKIKELRE 148
Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 4 FIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP- 60
I L ++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP
Sbjct: 104 IIPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPH 163
Query: 61 GPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
+R++ I + + +V+E + LD I + KGR
Sbjct: 164 STDRVVLIGGKPD---RVVECIKIILDLISESPIKGRA 198
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 360 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 413
>gi|332236655|ref|XP_003267515.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 5
[Nomascus leucogenys]
gi|332832094|ref|XP_001154460.2| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 8 [Pan
troglodytes]
gi|338719652|ref|XP_003364039.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K [Equus
caballus]
gi|397475607|ref|XP_003809225.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 5 [Pan
paniscus]
gi|402897763|ref|XP_003911914.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 6
[Papio anubis]
gi|410978219|ref|XP_003995493.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 5
[Felis catus]
gi|426362137|ref|XP_004048237.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 5
[Gorilla gorilla gorilla]
gi|26341878|dbj|BAC34601.1| unnamed protein product [Mus musculus]
gi|26353476|dbj|BAC40368.1| unnamed protein product [Mus musculus]
gi|194374597|dbj|BAG62413.1| unnamed protein product [Homo sapiens]
Length = 439
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 87/142 (61%), Gaps = 20/142 (14%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLI 124
IL+I A++E +++++++P L+E + Y G D ++RL+
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEYQH--------------YKGSDF------DCELRLL 126
Query: 125 VHQSQAGCIIGKGGTKIKELRD 146
+HQS AG IIG G KIKELR+
Sbjct: 127 IHQSLAGGIIGVKGAKIKELRE 148
Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 4 FIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP- 60
I L ++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP
Sbjct: 104 IIPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPH 163
Query: 61 GPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
+R++ I + + +V+E + LD I + KGR
Sbjct: 164 STDRVVLIGGKPD---RVVECIKIILDLISESPIKGRA 198
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 360 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 413
>gi|168277712|dbj|BAG10834.1| heterogeneous nuclear ribonucleoprotein K [synthetic construct]
gi|184186906|gb|ACC69193.1| heterogeneous nuclear ribonucleoprotein K [Mus musculus]
Length = 440
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 87/142 (61%), Gaps = 20/142 (14%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLI 124
IL+I A++E +++++++P L+E + Y G D ++RL+
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEYQH--------------YKGSDF------DCELRLL 126
Query: 125 VHQSQAGCIIGKGGTKIKELRD 146
+HQS AG IIG G KIKELR+
Sbjct: 127 IHQSLAGGIIGVKGAKIKELRE 148
Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 4 FIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP- 60
I L ++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP
Sbjct: 104 IIPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPH 163
Query: 61 GPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
+R++ I + + +V+E + LD I + KGR
Sbjct: 164 STDRVVLIGGKPD---RVVECIKIILDLISESPIKGRA 198
Score = 36.6 bits (83), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 360 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 413
>gi|449514357|ref|XP_002192510.2| PREDICTED: heterogeneous nuclear ribonucleoprotein K [Taeniopygia
guttata]
Length = 434
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 87/142 (61%), Gaps = 20/142 (14%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 24 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 83
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLI 124
IL+I A++E +++++++P L+E + Y G D ++RL+
Sbjct: 84 ILSISADIETIGEILKKIIPTLEEYQH--------------YKGSDF------DCELRLL 123
Query: 125 VHQSQAGCIIGKGGTKIKELRD 146
+HQS AG IIG G KIKELR+
Sbjct: 124 IHQSLAGGIIGVKGAKIKELRE 145
Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 4 FIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP- 60
I L ++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP
Sbjct: 101 IIPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPH 160
Query: 61 GPERILTIFAELENGLKVIEEVLPALDE 88
+R++ I + + ++ I+ +L + E
Sbjct: 161 STDRVVLIGGKPDRVVECIKIILDLISE 188
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 354 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 407
>gi|194753778|ref|XP_001959187.1| GF12183 [Drosophila ananassae]
gi|190620485|gb|EDV36009.1| GF12183 [Drosophila ananassae]
Length = 511
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 80/124 (64%), Gaps = 26/124 (20%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
+R+LIPS +AG+VIGKGG +I ++R +KA+V+V D GPER + I A++E+ L++I E+
Sbjct: 25 VRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDSQGPERTIQISADIESTLEIITEM 84
Query: 83 LPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
L KY + R +D+D+RL++HQS AGC+IGKGG KIK
Sbjct: 85 L--------KYFEER------------------DEDFDVRLLIHQSLAGCVIGKGGQKIK 118
Query: 143 ELRD 146
E+RD
Sbjct: 119 EIRD 122
>gi|363744462|ref|XP_425032.2| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 2
[Gallus gallus]
Length = 430
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 87/142 (61%), Gaps = 20/142 (14%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLI 124
IL+I A++E +++++++P L+E + Y G D ++RL+
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEYQH--------------YKGSDF------DCELRLL 126
Query: 125 VHQSQAGCIIGKGGTKIKELRD 146
+HQS AG IIG G KIKELR+
Sbjct: 127 IHQSLAGGIIGVKGAKIKELRE 148
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 4 FIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP- 60
I L ++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP
Sbjct: 104 IIPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPH 163
Query: 61 GPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
+R++ I + + +V+E + LD I + KGR
Sbjct: 164 STDRVVLIGGKPD---RVVECIKIILDLISESPIKGRA 198
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 350 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 403
>gi|8699624|gb|AAF78762.1|AF275629_1 bancal protein [Drosophila melanogaster]
Length = 508
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 80/124 (64%), Gaps = 26/124 (20%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
+R+LIPS +AG+VIGKGG +I ++R +KA+V+V D GPER + I A++E+ L++I E+
Sbjct: 25 VRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDSQGPERTIQISADIESTLEIITEM 84
Query: 83 LPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
L KY + R +D+D+RL++HQS AGC+IGKGG KIK
Sbjct: 85 L--------KYFEER------------------DEDFDVRLLIHQSLAGCVIGKGGQKIK 118
Query: 143 ELRD 146
E+RD
Sbjct: 119 EIRD 122
>gi|363744460|ref|XP_003643054.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 1
[Gallus gallus]
Length = 426
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 87/142 (61%), Gaps = 20/142 (14%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 24 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 83
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLI 124
IL+I A++E +++++++P L+E + Y G D ++RL+
Sbjct: 84 ILSISADIETIGEILKKIIPTLEEYQH--------------YKGSDF------DCELRLL 123
Query: 125 VHQSQAGCIIGKGGTKIKELRD 146
+HQS AG IIG G KIKELR+
Sbjct: 124 IHQSLAGGIIGVKGAKIKELRE 145
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 4 FIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP- 60
I L ++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP
Sbjct: 101 IIPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPH 160
Query: 61 GPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
+R++ I + + +V+E + LD I + KGR
Sbjct: 161 STDRVVLIGGKPD---RVVECIKIILDLISESPIKGRA 195
Score = 36.6 bits (83), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 347 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 400
>gi|198458337|ref|XP_002138531.1| GA24337 [Drosophila pseudoobscura pseudoobscura]
gi|198136305|gb|EDY69089.1| GA24337 [Drosophila pseudoobscura pseudoobscura]
Length = 505
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 81/128 (63%), Gaps = 26/128 (20%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKV 78
N+ +R+LIPS +AG+VIGKGG +I ++R +KA+V+V D GPER + I A++E L++
Sbjct: 21 NEDTVRILIPSSIAGAVIGKGGQHIQKMRTQYKAAVSVDDSQGPERTIQISADIEATLEI 80
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
I E+L KY + R +D+D+RL++HQS AGC+IGKGG
Sbjct: 81 ITEML--------KYFEER------------------DEDFDVRLLIHQSLAGCVIGKGG 114
Query: 139 TKIKELRD 146
KIKE+RD
Sbjct: 115 QKIKEIRD 122
>gi|449272169|gb|EMC82214.1| Heterogeneous nuclear ribonucleoprotein K [Columba livia]
Length = 422
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 87/142 (61%), Gaps = 20/142 (14%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 24 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 83
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLI 124
IL+I A++E +++++++P L+E + Y G D ++RL+
Sbjct: 84 ILSISADIETIGEILKKIIPTLEEYQH--------------YKGSDF------DCELRLL 123
Query: 125 VHQSQAGCIIGKGGTKIKELRD 146
+HQS AG IIG G KIKELR+
Sbjct: 124 IHQSLAGGIIGVKGAKIKELRE 145
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 1 MEFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD-- 58
++ I L ++ ++G D ELRLLI +AG +IG G+ I LR + + ++ +
Sbjct: 98 LKKIIPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC 157
Query: 59 CP-GPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
CP +R++ I + + +V+E + LD I + KGR
Sbjct: 158 CPHSTDRVVLIGGKPD---RVVECIKIILDLISESPIKGRA 195
>gi|71897277|ref|NP_001026556.1| heterogeneous nuclear ribonucleoprotein K [Gallus gallus]
gi|75571241|sp|Q5ZIQ3.1|HNRPK_CHICK RecName: Full=Heterogeneous nuclear ribonucleoprotein K;
Short=hnRNP K
gi|53135051|emb|CAG32390.1| hypothetical protein RCJMB04_24e23 [Gallus gallus]
Length = 427
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 86/142 (60%), Gaps = 20/142 (14%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 24 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 83
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLI 124
IL+I A+ E +++++++P L+E + Y G D ++RL+
Sbjct: 84 ILSISADTETIGEILKKIIPTLEEYQH--------------YKGSDF------DCELRLL 123
Query: 125 VHQSQAGCIIGKGGTKIKELRD 146
+HQS AG IIG G KIKELR+
Sbjct: 124 IHQSLAGGIIGVKGAKIKELRE 145
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 4 FIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP- 60
I L ++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP
Sbjct: 101 IIPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPH 160
Query: 61 GPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
+R++ I + + +V+E + LD I + KGR
Sbjct: 161 STDRVVLIGGKPD---RVVECIKIILDLISESPIKGRA 195
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 348 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 401
>gi|45361501|ref|NP_989327.1| heterogeneous nuclear ribonucleoprotein K [Xenopus (Silurana)
tropicalis]
gi|39794355|gb|AAH64170.1| heterogeneous nuclear ribonucleoprotein K [Xenopus (Silurana)
tropicalis]
Length = 399
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 87/142 (61%), Gaps = 20/142 (14%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 24 MEEEQAFKRSRNTDMMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 83
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLI 124
IL+I A++E +++++++P L+E + + G D ++RL+
Sbjct: 84 ILSISADIETIGEILKKIIPTLEEYQH--------------FKGNDF------DCELRLL 123
Query: 125 VHQSQAGCIIGKGGTKIKELRD 146
+HQS AG IIG G KIKELR+
Sbjct: 124 IHQSLAGGIIGVKGAKIKELRE 145
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 4 FIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP- 60
I L ++ F+G D ELRLLI +AG +IG G+ I LR + ++ + CP
Sbjct: 101 IIPTLEEYQHFKGNDFDCELRLLIHQSLAGGIIGVKGAKIKELREKTQTTIKLFQECCPH 160
Query: 61 GPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
+R++ I + + +V+E + LD I + KGR
Sbjct: 161 STDRVVLIGGKPD---RVVECIKVILDLISESPVKGRS 195
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 317 GGPV-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSDDRIITI 370
>gi|426258298|ref|XP_004022751.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Ovis
aries]
Length = 330
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 31 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 90
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
IL+I A++E +++++++P L+E Q + D + N G D
Sbjct: 91 ILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG-SDFDC 149
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQS AG IIG G KIKELR+
Sbjct: 150 ELRLLIHQSLAGGIIGVKGAKIKELRE 176
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 18/149 (12%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP +R++
Sbjct: 138 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPQSTDRVV 197
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDG----GDGYNGGGVGGLGKDD---- 118
I + + +V+E + LD I + KGR + Y+ GG + D
Sbjct: 198 LIGGKPD---RVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRP 254
Query: 119 --YDIRLIVHQSQAGCIIGKGGTKIKELR 145
+ +R + AG IIGKGG +IK++R
Sbjct: 255 VGFPMR--GREDLAGSIIGKGGQRIKQIR 281
>gi|313151207|ref|NP_998159.2| heterogeneous nuclear ribonucleoprotein K [Danio rerio]
Length = 429
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 82/137 (59%), Gaps = 20/137 (14%)
Query: 11 FKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
+KR R VELR+L+ S+ AG+VIGKGG NI LR D+ A+V+VPD GPERIL++ A
Sbjct: 33 YKRSRNSDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNATVSVPDSSGPERILSVSA 92
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
++ +++ +++P L+E + G D ++RL++HQS A
Sbjct: 93 DIPTVAEILLKIIPTLEEYQHHKGVDF--------------------DCELRLLIHQSLA 132
Query: 131 GCIIGKGGTKIKELRDT 147
G IIG G KIKELRD+
Sbjct: 133 GSIIGLKGAKIKELRDS 149
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 4 FIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP- 60
I L ++ +G D ELRLLI +AGS+IG G+ I LR+ + ++ + CP
Sbjct: 104 IIPTLEEYQHHKGVDFDCELRLLIHQSLAGSIIGLKGAKIKELRDSTQTTIKLFQECCPQ 163
Query: 61 GPERILTIFAELENGLKVIEEVL 83
+R++ + + E ++ I+ +L
Sbjct: 164 STDRVVLVGGKAERVVQCIKTML 186
Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
+ ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 354 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLQGSEDRIITI 403
>gi|195029383|ref|XP_001987553.1| GH21981 [Drosophila grimshawi]
gi|193903553|gb|EDW02420.1| GH21981 [Drosophila grimshawi]
Length = 512
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 82/128 (64%), Gaps = 26/128 (20%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKV 78
N+ +R+LIPS +AG+VIGKGG +I ++R +KA+V+V D GPER + I A++++ L++
Sbjct: 20 NEDMVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDSQGPERTIQISADIDSTLEI 79
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
I E+L KY + R D++D+RL++HQS AGC+IGKGG
Sbjct: 80 ITEML--------KYFEER------------------DDEFDVRLLIHQSLAGCVIGKGG 113
Query: 139 TKIKELRD 146
KIKE+RD
Sbjct: 114 QKIKEIRD 121
>gi|89272931|emb|CAJ83219.1| heterogeneous nuclear ribonucleoprotein K [Xenopus (Silurana)
tropicalis]
Length = 376
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 88/142 (61%), Gaps = 20/142 (14%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 1 MEEEQAFKRSRNTDMMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 60
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLI 124
IL+I A++E +++++++P L+E Y +G + D ++RL+
Sbjct: 61 ILSISADIETIGEILKKIIPTLEE----YQHFKGND----------------FDCELRLL 100
Query: 125 VHQSQAGCIIGKGGTKIKELRD 146
+HQS AG IIG G KIKELR+
Sbjct: 101 IHQSLAGGIIGVKGAKIKELRE 122
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 4 FIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP- 60
I L ++ F+G D ELRLLI +AG +IG G+ I LR + ++ + CP
Sbjct: 78 IIPTLEEYQHFKGNDFDCELRLLIHQSLAGGIIGVKGAKIKELREKTQTTIKLFQECCPH 137
Query: 61 GPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
+R++ I + + +V+E + LD I + KGR
Sbjct: 138 STDRVVLIGGKPD---RVVECIKVILDLISESPVKGRS 172
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 294 GGPV-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSDDRIITI 347
>gi|195119576|ref|XP_002004307.1| GI19683 [Drosophila mojavensis]
gi|193909375|gb|EDW08242.1| GI19683 [Drosophila mojavensis]
Length = 509
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 80/128 (62%), Gaps = 26/128 (20%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKV 78
N+ +R+LIPS +AG+VIGKGG +I ++R +KA+V+V D GPER + I ++++ L++
Sbjct: 20 NEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDSQGPERTIQISTDIDSTLEI 79
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
I E+L KY + R E YD+RL++HQS AGC+IGKGG
Sbjct: 80 ITEML--------KYFEERDEE------------------YDVRLLIHQSLAGCVIGKGG 113
Query: 139 TKIKELRD 146
KIKE+RD
Sbjct: 114 QKIKEIRD 121
>gi|348578485|ref|XP_003475013.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Cavia
porcellus]
Length = 338
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
IL+I A++E +++++++P L+E Q + D + N G D
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG-SDFDC 145
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQS AG IIG G KIKELR+
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRE 172
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 258 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 311
>gi|149039794|gb|EDL93910.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_b [Rattus
norvegicus]
Length = 386
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
IL+I A++E +++++++P L+E Q + D + N G D
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG-SDFDC 145
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQS AG IIG G KIKELR+
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRE 172
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP +R++
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + +V+E + LD I + KGR
Sbjct: 194 LIGGKPD---RVVECIKIILDLISESPIKGRA 222
>gi|339258170|ref|XP_003369271.1| putative KH domain protein [Trichinella spiralis]
gi|316966532|gb|EFV51093.1| putative KH domain protein [Trichinella spiralis]
Length = 640
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 59/136 (43%), Positives = 77/136 (56%), Gaps = 24/136 (17%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTI-FA 70
KR R G ELRLLI S+ AG+VIGKGG NI RLR+ + ASV +PD PER+L I A
Sbjct: 273 KRRRSGHEGPELRLLIASKSAGAVIGKGGENIKRLRSQYCASVNIPDSSTPERVLNISCA 332
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ + +++P LD+ G G + ++R++VHQSQA
Sbjct: 333 NVATLTDCVSDLIPRLDD-----------------------GKSGPQEAEVRMLVHQSQA 369
Query: 131 GCIIGKGGTKIKELRD 146
G IIG+ G KIKELRD
Sbjct: 370 GAIIGRAGFKIKELRD 385
Score = 42.0 bits (97), Expect = 0.094, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 42/68 (61%), Gaps = 7/68 (10%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTI---FAELENGL 76
+++ IP + G++IGKGG I R+R + A + V D P P ERI+TI ++++ G
Sbjct: 512 VQVTIPKELGGTIIGKGGERINRIREESGAQIVV-DPPTPDSDERIITISGTTSQIKLGQ 570
Query: 77 KVIEEVLP 84
++++ +P
Sbjct: 571 YLLQQCIP 578
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 15 RGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFAE 71
+ GP + E+R+L+ AG++IG+ G I LR+ A + V P ER++ +
Sbjct: 352 KSGPQEAEVRMLVHQSQAGAIIGRAGFKIKELRDITGAGIRVYSECAPLSTERVIQFSGD 411
Query: 72 LENGLKVIEEVLPALDE 88
E + I V +E
Sbjct: 412 KEKIVNAIRHVKEICEE 428
>gi|460789|emb|CAA51267.1| transformation upregulated nuclear protein [Homo sapiens]
Length = 464
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 91/147 (61%), Gaps = 6/147 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ +FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQDFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
IL+I A++E +++++++P L+E Q + D + N G D
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG-SDFDC 145
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQS AG IIG G KIKELR+
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRE 172
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP +R++
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + +V+E + LD I + KGR
Sbjct: 194 LIGGKPD---RVVECIKIILDLISESPIKGRA 222
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 384 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 437
>gi|432109005|gb|ELK33475.1| Heterogeneous nuclear ribonucleoprotein K [Myotis davidii]
Length = 438
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
IL+I A++E +++++++P L+E Q + D + N G D
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG-SDFDC 145
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQS AG IIG G KIKELR+
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRE 172
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP +R++
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + +V+E + LD I + KGR
Sbjct: 194 LIGGKPD---RVVECIKIILDLISESPIKGRA 222
>gi|148709317|gb|EDL41263.1| mCG6893, isoform CRA_b [Mus musculus]
gi|148709318|gb|EDL41264.1| mCG6893, isoform CRA_b [Mus musculus]
Length = 368
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
IL+I A++E +++++++P L+E Q + D + N G D
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG-SDFDC 145
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQS AG IIG G KIKELR+
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRE 172
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP +R++
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + +V+E + LD I + KGR
Sbjct: 194 LIGGKPD---RVVECIKIILDLISESPIKGRA 222
>gi|380812326|gb|AFE78037.1| heterogeneous nuclear ribonucleoprotein K isoform a [Macaca
mulatta]
Length = 459
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
IL+I A++E +++++++P L+E Q + D + N G D
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG-SDFDC 145
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQS AG IIG G KIKELR+
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRE 172
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP +R++
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + +V+E + LD I + KGR
Sbjct: 194 LIGGKPD---RVVECIKIILDLISESPIKGRA 222
Score = 36.2 bits (82), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 379 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 432
>gi|209151855|gb|ACI33086.1| Heterogeneous nuclear ribonucleoprotein K [Salmo salar]
Length = 433
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 87/143 (60%), Gaps = 20/143 (13%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 28 MEEEQAFKRSRNTDEMVELRVLLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 87
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLI 124
IL++ A+++ +++ +++P L+E + YNG D ++RL+
Sbjct: 88 ILSVSADIDTIGEILLKIIPTLEEYQH--------------YNGIDF------DCELRLL 127
Query: 125 VHQSQAGCIIGKGGTKIKELRDT 147
+HQS AG IIG G KIKELR+
Sbjct: 128 IHQSLAGGIIGVKGAKIKELREN 150
Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 4 FIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP- 60
I L ++ + G D ELRLLI +AG +IG G+ I LR + + ++ + CP
Sbjct: 105 IIPTLEEYQHYNGIDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPQ 164
Query: 61 GPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
+R++ + + + +V+E + LD + + KGR
Sbjct: 165 STDRVVLVGGKPD---RVVECIKVILDLVSEAPIKGRA 199
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 354 GGPV-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 407
>gi|440905354|gb|ELR55741.1| Heterogeneous nuclear ribonucleoprotein K [Bos grunniens mutus]
Length = 464
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
IL+I A++E +++++++P L+E Q + D + N G D
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG-SDFDC 145
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQS AG IIG G KIKELR+
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRE 172
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP +R++
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPQSTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + +V+E + LD I + KGR
Sbjct: 194 LIGGKPD---RVVECIKIILDLISESPIKGRA 222
>gi|147903924|ref|NP_001080563.1| heterogeneous nuclear ribonucleoprotein K [Xenopus laevis]
gi|27882469|gb|AAH44711.1| Hnrpk protein [Xenopus laevis]
Length = 399
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 87/142 (61%), Gaps = 20/142 (14%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 24 MEEEQAFKRSRNTDLMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 83
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLI 124
IL++ A++E +++++++P L+E + + G D ++RL+
Sbjct: 84 ILSMSADIETIGEILKKIIPTLEEYQH--------------FKGNDF------DCELRLL 123
Query: 125 VHQSQAGCIIGKGGTKIKELRD 146
+HQS AG IIG G KIKELR+
Sbjct: 124 IHQSLAGGIIGVKGAKIKELRE 145
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 4 FIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP- 60
I L ++ F+G D ELRLLI +AG +IG G+ I LR + ++ + CP
Sbjct: 101 IIPTLEEYQHFKGNDFDCELRLLIHQSLAGGIIGVKGAKIKELREKTQTTIKLFQECCPH 160
Query: 61 GPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGR 97
+R++ I + + +V+E + LD I + KGR
Sbjct: 161 STDRVVLIGGKPD---RVVECIKVILDLISESPVKGR 194
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP V ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 317 GGPV-VTTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSDDRIITI 370
>gi|355567865|gb|EHH24206.1| hypothetical protein EGK_07823 [Macaca mulatta]
Length = 464
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
IL+I A++E +++++++P L+E Q + D + N G D
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG-SDFDC 145
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQS AG IIG G KIKELR+
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRE 172
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++T+ CP +R++
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQPTITLFQECCPHSTDRVI 193
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + +V+E + LD I + KGR
Sbjct: 194 LIGGKPD---RVVECIKIILDLISESPIKGRA 222
>gi|291358560|gb|ADD96765.1| heterogeneous nuclear ribonuclear protein K [Capra hircus]
Length = 441
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
IL+I A++E +++++++P L+E Q + D + N G D
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG-SDFDC 145
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQS AG IIG G KIKELR+
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRE 172
Score = 42.0 bits (97), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP +R++
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPQSTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + +V+E + LD I + KGR
Sbjct: 194 LIGGKPD---RVVECIKIILDLISESPIKGRA 222
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 362 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 415
>gi|119583082|gb|EAW62678.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_d [Homo
sapiens]
gi|119583085|gb|EAW62681.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_d [Homo
sapiens]
Length = 463
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
IL+I A++E +++++++P L+E Q + D + N G D
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG-SDFDC 145
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQS AG IIG G KIKELR+
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRE 172
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP +R++
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + +V+E + LD I + KGR
Sbjct: 194 LIGGKPD---RVVECIKIILDLISESPIKGRA 222
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 384 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 437
>gi|119583083|gb|EAW62679.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_e [Homo
sapiens]
Length = 464
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
IL+I A++E +++++++P L+E Q + D + N G D
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG-SDFDC 145
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQS AG IIG G KIKELR+
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRE 172
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP +R++
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + +V+E + LD I + KGR
Sbjct: 194 LIGGKPD---RVVECIKIILDLISESPIKGRA 222
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 384 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 437
>gi|119583080|gb|EAW62676.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_b [Homo
sapiens]
Length = 462
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
IL+I A++E +++++++P L+E Q + D + N G D
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG-SDFDC 145
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQS AG IIG G KIKELR+
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRE 172
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP +R++
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + +V+E + LD I + KGR
Sbjct: 194 LIGGKPD---RVVECIKIILDLISESPIKGRA 222
Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 383 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 436
>gi|410925642|ref|XP_003976289.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 1
[Takifugu rubripes]
Length = 430
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 83/137 (60%), Gaps = 20/137 (14%)
Query: 11 FKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPERIL++ A
Sbjct: 34 FKRSRNADEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSVNA 93
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
++ K++ +++P L+E + Y+G D ++RL++HQS A
Sbjct: 94 SIDTIGKILLKIIPTLEEYQH--------------YSGIDF------DSELRLLIHQSLA 133
Query: 131 GCIIGKGGTKIKELRDT 147
G IIG G KIKELR+
Sbjct: 134 GGIIGVKGAKIKELREN 150
Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 4 FIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP- 60
I L ++ + G D ELRLLI +AG +IG G+ I LR + + ++ + CP
Sbjct: 105 IIPTLEEYQHYSGIDFDSELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPH 164
Query: 61 GPERILTIFAELENGLKVIEEVLPALDE 88
+R++ + + E ++ I+ +L + E
Sbjct: 165 STDRVVLVGGKPERVIECIKVILELVSE 192
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 13/72 (18%)
Query: 9 SNFKRF----RGGPNDV-----ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC 59
S+++RF RG +D+ ++ IP +AGS+IGKGG I ++R++ AS+ + D
Sbjct: 334 SSWERFQSGSRGSYSDIGGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHECGASIKI-DE 392
Query: 60 P---GPERILTI 68
P +RI+TI
Sbjct: 393 PLEGSEDRIITI 404
>gi|126330639|ref|XP_001363707.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Monodelphis domestica]
gi|395515329|ref|XP_003761858.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K [Sarcophilus
harrisii]
Length = 471
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
IL+I A++E +++++++P L+E Q + D + N G D
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG-SDFDC 145
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQS AG IIG G KIKELR+
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRE 172
Score = 42.0 bits (97), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP +R++
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + +V+E + LD I + KGR
Sbjct: 194 LIGGKPD---RVVECIKIILDLISESPIKGRA 222
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 391 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 444
>gi|410925644|ref|XP_003976290.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 2
[Takifugu rubripes]
Length = 430
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 83/137 (60%), Gaps = 20/137 (14%)
Query: 11 FKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPERIL++ A
Sbjct: 34 FKRSRNADEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSVNA 93
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
++ K++ +++P L+E + Y+G D ++RL++HQS A
Sbjct: 94 SIDTIGKILLKIIPTLEEYQH--------------YSGIDF------DSELRLLIHQSLA 133
Query: 131 GCIIGKGGTKIKELRDT 147
G IIG G KIKELR+
Sbjct: 134 GGIIGVKGAKIKELREN 150
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 4 FIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP- 60
I L ++ + G D ELRLLI +AG +IG G+ I LR + + ++ + CP
Sbjct: 105 IIPTLEEYQHYSGIDFDSELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPH 164
Query: 61 GPERILTIFAELENGLKVIEEVLPALDE 88
+R++ + + E ++ I+ +L + E
Sbjct: 165 STDRVVLVGGKPERVIECIKVILELVSE 192
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 13/72 (18%)
Query: 9 SNFKRF----RGGPNDV-----ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC 59
S+++RF RG +D+ ++ IP +AGS+IGKGG I ++R++ AS+ + D
Sbjct: 334 SSWERFQSGSRGSYSDIGGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHECGASIKI-DE 392
Query: 60 P---GPERILTI 68
P +RI+TI
Sbjct: 393 PLEGSEDRIITI 404
>gi|299029|gb|AAB26047.1| pre-mRNA binding K protein, hnRNP K [Xenopus laevis, Peptide, 396
aa]
Length = 396
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/136 (44%), Positives = 83/136 (61%), Gaps = 22/136 (16%)
Query: 11 FKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPERIL+I A
Sbjct: 30 FKRSRNTDMMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISA 89
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
++E +++++++P L+E + G D ++RL++HQS A
Sbjct: 90 DIETIGEILKKIIPTLEE----------------HFKGNDF------DCELRLLIHQSLA 127
Query: 131 GCIIGKGGTKIKELRD 146
G IIG G KIKELR+
Sbjct: 128 GGIIGVKGAKIKELRE 143
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERILTI 68
+ F+G D ELRLLI +AG +IG G+ I LR + ++ + CP +R++ I
Sbjct: 107 EHFKGNDFDCELRLLIHQSLAGGIIGVKGAKIKELREKTQTTIKLFQECCPHSTDRVVLI 166
Query: 69 FAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGL 114
+ +V+E + LD I + KGR + Y GG
Sbjct: 167 GGRPD---RVVECIKVILDLISESPVKGRSQPYDPNFYETYDYGGF 209
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 314 GGPV-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSDDRIITI 367
>gi|74195705|dbj|BAE39657.1| unnamed protein product [Mus musculus]
Length = 463
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
IL+I A++E +++++++P L+E Q + D + N G D
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG-SDFDC 145
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQS AG IIG G KIKELR+
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRE 172
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP +R++
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + +V+E + LD I + KGR
Sbjct: 194 LIGGKPD---RVVECIKIILDLISESPIKGRA 222
>gi|354500000|ref|XP_003512091.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 2
[Cricetulus griseus]
Length = 463
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
IL+I A++E +++++++P L+E Q + D + N G D
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG-SDFDC 145
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQS AG IIG G KIKELR+
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRE 172
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP +R++
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + +V+E + LD I + KGR
Sbjct: 194 LIGGKPD---RVVECIKIILDLISESPIKGRA 222
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 384 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 437
>gi|354499998|ref|XP_003512090.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 1
[Cricetulus griseus]
Length = 464
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
IL+I A++E +++++++P L+E Q + D + N G D
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG-SDFDC 145
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQS AG IIG G KIKELR+
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRE 172
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP +R++
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + +V+E + LD I + KGR
Sbjct: 194 LIGGKPD---RVVECIKIILDLISESPIKGRA 222
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 384 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 437
>gi|61369343|gb|AAX43320.1| heterogeneous nuclear ribonucleoprotein K [synthetic construct]
Length = 465
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
IL+I A++E +++++++P L+E Q + D + N G D
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG-SDFDC 145
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQS AG IIG G KIKELR+
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRE 172
Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP +R++
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + +V+E + LD I + KGR
Sbjct: 194 LIGGKPD---RVVECIKIILDLISESPIKGRA 222
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 384 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 437
>gi|426256848|ref|XP_004022049.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 2
[Ovis aries]
Length = 466
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
IL+I A++E +++++++P L+E Q + D + N G D
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG-SDFDC 145
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQS AG IIG G KIKELR+
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRE 172
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP +R++
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPQSTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + +V+E + LD I + KGR
Sbjct: 194 LIGGKPD---RVVECIKIILDLISESPIKGRA 222
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 11/86 (12%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTIFA-- 70
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 384 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITITGTQ 441
Query: 71 -ELENGLKVIEEVLPALDEIRQKYGK 95
+++N +++ ++ ++Q GK
Sbjct: 442 DQIQNAQYLLQN---SVKHVKQYSGK 464
>gi|74144445|dbj|BAE36070.1| unnamed protein product [Mus musculus]
Length = 463
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
IL+I A++E +++++++P L+E Q + D + N G D
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG-SDFDC 145
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQS AG IIG G KIKELR+
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRE 172
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP +R++
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + +V+E + LD I + KGR
Sbjct: 194 LIGGKPD---RVVECIKIILDLISESPIKGRA 222
Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 384 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 437
>gi|74177637|dbj|BAE38921.1| unnamed protein product [Mus musculus]
Length = 464
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
IL+I A++E +++++++P L+E Q + D + N G D
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLKSDAVECLNYQHYKG-SDFDC 145
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQS AG IIG G KIKELR+
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRE 172
Score = 41.6 bits (96), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP +R++
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + +V+E + LD I + KGR
Sbjct: 194 LIGGKPD---RVVECIKIILDLISESPIKGRA 222
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 384 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 437
>gi|334333295|ref|XP_003341704.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Monodelphis domestica]
Length = 470
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
IL+I A++E +++++++P L+E Q + D + N G D
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG-SDFDC 145
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQS AG IIG G KIKELR+
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRE 172
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP +R++
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + +V+E + LD I + KGR
Sbjct: 194 LIGGKPD---RVVECIKIILDLISESPIKGRA 222
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 391 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 444
>gi|14165437|ref|NP_112553.1| heterogeneous nuclear ribonucleoprotein K isoform a [Homo sapiens]
gi|14165439|ref|NP_002131.2| heterogeneous nuclear ribonucleoprotein K isoform a [Homo sapiens]
gi|197101649|ref|NP_001126766.1| heterogeneous nuclear ribonucleoprotein K [Pongo abelii]
gi|388454448|ref|NP_001253875.1| heterogeneous nuclear ribonucleoprotein K [Macaca mulatta]
gi|114625208|ref|XP_001155079.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 18
[Pan troglodytes]
gi|114625210|ref|XP_001155315.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 22
[Pan troglodytes]
gi|149758457|ref|XP_001489114.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Equus caballus]
gi|296189573|ref|XP_002742828.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Callithrix jacchus]
gi|296189575|ref|XP_002742829.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Callithrix jacchus]
gi|296189579|ref|XP_002742831.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 4
[Callithrix jacchus]
gi|301758414|ref|XP_002915066.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Ailuropoda melanoleuca]
gi|332236647|ref|XP_003267511.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Nomascus leucogenys]
gi|332236651|ref|XP_003267513.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 3
[Nomascus leucogenys]
gi|344272026|ref|XP_003407837.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein K-like [Loxodonta africana]
gi|395819298|ref|XP_003783031.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K [Otolemur
garnettii]
gi|397475599|ref|XP_003809221.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1 [Pan
paniscus]
gi|397475603|ref|XP_003809223.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 3 [Pan
paniscus]
gi|397475609|ref|XP_003809226.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 6 [Pan
paniscus]
gi|402897753|ref|XP_003911909.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Papio anubis]
gi|402897755|ref|XP_003911910.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Papio anubis]
gi|402897761|ref|XP_003911913.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 5
[Papio anubis]
gi|403300938|ref|XP_003941169.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Saimiri boliviensis boliviensis]
gi|403300942|ref|XP_003941171.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 3
[Saimiri boliviensis boliviensis]
gi|403300944|ref|XP_003941172.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 4
[Saimiri boliviensis boliviensis]
gi|410978211|ref|XP_003995489.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Felis catus]
gi|410978213|ref|XP_003995490.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Felis catus]
gi|426362129|ref|XP_004048233.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Gorilla gorilla gorilla]
gi|426362131|ref|XP_004048234.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Gorilla gorilla gorilla]
gi|75056718|sp|Q5R5H8.1|HNRPK_PONAB RecName: Full=Heterogeneous nuclear ribonucleoprotein K;
Short=hnRNP K
gi|75075750|sp|Q4R4M6.1|HNRPK_MACFA RecName: Full=Heterogeneous nuclear ribonucleoprotein K;
Short=hnRNP K
gi|12653175|gb|AAH00355.1| Heterogeneous nuclear ribonucleoprotein K [Homo sapiens]
gi|13879427|gb|AAH06694.1| Hnrpk protein [Mus musculus]
gi|26347481|dbj|BAC37389.1| unnamed protein product [Mus musculus]
gi|38197650|gb|AAH61867.1| Hnrpk protein [Rattus norvegicus]
gi|48145659|emb|CAG33052.1| HNRPK [Homo sapiens]
gi|55732576|emb|CAH92988.1| hypothetical protein [Pongo abelii]
gi|58475965|gb|AAH89328.1| Hnrpk protein [Mus musculus]
gi|61359196|gb|AAX41682.1| heterogeneous nuclear ribonucleoprotein K [synthetic construct]
gi|67971214|dbj|BAE01949.1| unnamed protein product [Macaca fascicularis]
gi|74139420|dbj|BAE40851.1| unnamed protein product [Mus musculus]
gi|74141211|dbj|BAE35915.1| unnamed protein product [Mus musculus]
gi|74178242|dbj|BAE29905.1| unnamed protein product [Mus musculus]
gi|74183280|dbj|BAE22563.1| unnamed protein product [Mus musculus]
gi|74185026|dbj|BAE39121.1| unnamed protein product [Mus musculus]
gi|119583081|gb|EAW62677.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_c [Homo
sapiens]
gi|123979648|gb|ABM81653.1| heterogeneous nuclear ribonucleoprotein K [synthetic construct]
gi|123994453|gb|ABM84828.1| heterogeneous nuclear ribonucleoprotein K [synthetic construct]
gi|158256108|dbj|BAF84025.1| unnamed protein product [Homo sapiens]
gi|197692227|dbj|BAG70077.1| heterogeneous nuclear ribonucleoprotein K isoform a [Homo sapiens]
gi|197692481|dbj|BAG70204.1| heterogeneous nuclear ribonucleoprotein K isoform a [Homo sapiens]
gi|351696771|gb|EHA99689.1| Heterogeneous nuclear ribonucleoprotein K [Heterocephalus glaber]
gi|380812328|gb|AFE78038.1| heterogeneous nuclear ribonucleoprotein K isoform a [Macaca
mulatta]
gi|380812330|gb|AFE78039.1| heterogeneous nuclear ribonucleoprotein K isoform a [Macaca
mulatta]
gi|410337439|gb|JAA37666.1| heterogeneous nuclear ribonucleoprotein K [Pan troglodytes]
gi|417401379|gb|JAA47578.1| Putative polyc-binding hnrnp-k protein hrb57a/hnrnp [Desmodus
rotundus]
Length = 464
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
IL+I A++E +++++++P L+E Q + D + N G D
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG-SDFDC 145
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQS AG IIG G KIKELR+
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRE 172
Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP +R++
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + +V+E + LD I + KGR
Sbjct: 194 LIGGKPD---RVVECIKIILDLISESPIKGRA 222
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 384 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 437
>gi|77736071|ref|NP_001029734.1| heterogeneous nuclear ribonucleoprotein K [Bos taurus]
gi|426219903|ref|XP_004004157.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Ovis aries]
gi|426219905|ref|XP_004004158.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Ovis aries]
gi|426224282|ref|XP_004006301.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Ovis
aries]
gi|426256846|ref|XP_004022048.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 1
[Ovis aries]
gi|108860777|sp|Q3T0D0.1|HNRPK_BOVIN RecName: Full=Heterogeneous nuclear ribonucleoprotein K;
Short=hnRNP K
gi|74354615|gb|AAI02451.1| Heterogeneous nuclear ribonucleoprotein K [Bos taurus]
gi|296484523|tpg|DAA26638.1| TPA: heterogeneous nuclear ribonucleoprotein K [Bos taurus]
Length = 464
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
IL+I A++E +++++++P L+E Q + D + N G D
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG-SDFDC 145
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQS AG IIG G KIKELR+
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRE 172
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP +R++
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPQSTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + +V+E + LD I + KGR
Sbjct: 194 LIGGKPD---RVVECIKIILDLISESPIKGRA 222
Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 384 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 437
>gi|13384620|ref|NP_079555.1| heterogeneous nuclear ribonucleoprotein K [Mus musculus]
gi|14165435|ref|NP_112552.1| heterogeneous nuclear ribonucleoprotein K isoform b [Homo sapiens]
gi|16923998|ref|NP_476482.1| heterogeneous nuclear ribonucleoprotein K [Rattus norvegicus]
gi|114625188|ref|XP_001155028.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 17
[Pan troglodytes]
gi|114625190|ref|XP_001155252.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 21
[Pan troglodytes]
gi|126334813|ref|XP_001368466.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 2
[Monodelphis domestica]
gi|296189583|ref|XP_002742833.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 6
[Callithrix jacchus]
gi|332236649|ref|XP_003267512.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Nomascus leucogenys]
gi|332236653|ref|XP_003267514.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 4
[Nomascus leucogenys]
gi|338719650|ref|XP_003364038.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K [Equus
caballus]
gi|397475601|ref|XP_003809222.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2 [Pan
paniscus]
gi|397475605|ref|XP_003809224.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 4 [Pan
paniscus]
gi|402897757|ref|XP_003911911.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 3
[Papio anubis]
gi|402897759|ref|XP_003911912.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 4
[Papio anubis]
gi|403300940|ref|XP_003941170.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Saimiri boliviensis boliviensis]
gi|410978215|ref|XP_003995491.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 3
[Felis catus]
gi|410978217|ref|XP_003995492.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 4
[Felis catus]
gi|426362133|ref|XP_004048235.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 3
[Gorilla gorilla gorilla]
gi|426362135|ref|XP_004048236.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 4
[Gorilla gorilla gorilla]
gi|48429097|sp|P61980.1|HNRPK_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein K;
Short=hnRNP K; AltName: Full=dC stretch-binding protein;
Short=CSBP
gi|48429103|sp|P61978.1|HNRPK_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein K;
Short=hnRNP K; AltName: Full=Transformation up-regulated
nuclear protein; Short=TUNP
gi|48429104|sp|P61979.1|HNRPK_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein K;
Short=hnRNP K
gi|241478|gb|AAB20770.1| heterogeneous nuclear ribonucleoprotein complex K [Homo sapiens]
gi|409389|dbj|BAA04566.1| dC-stretch binding protein [Rattus norvegicus]
gi|12847547|dbj|BAB27614.1| unnamed protein product [Mus musculus]
gi|15929044|gb|AAH14980.1| Heterogeneous nuclear ribonucleoprotein K [Homo sapiens]
gi|119583079|gb|EAW62675.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_a [Homo
sapiens]
gi|148709316|gb|EDL41262.1| mCG6893, isoform CRA_a [Mus musculus]
gi|149039793|gb|EDL93909.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_a [Rattus
norvegicus]
gi|380812324|gb|AFE78036.1| heterogeneous nuclear ribonucleoprotein K isoform b [Macaca
mulatta]
gi|410337441|gb|JAA37667.1| heterogeneous nuclear ribonucleoprotein K [Pan troglodytes]
gi|417401355|gb|JAA47567.1| Putative polyc-binding hnrnp-k protein hrb57a/hnrnp [Desmodus
rotundus]
Length = 463
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
IL+I A++E +++++++P L+E Q + D + N G D
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG-SDFDC 145
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQS AG IIG G KIKELR+
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRE 172
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP +R++
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + +V+E + LD I + KGR
Sbjct: 194 LIGGKPD---RVVECIKIILDLISESPIKGRA 222
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 384 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 437
>gi|392513715|ref|NP_001254774.1| heterogeneous nuclear ribonucleoprotein K [Sus scrofa]
Length = 463
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
IL+I A++E +++++++P L+E Q + D + N G D
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG-SDFDC 145
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQS AG IIG G KIKELR+
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRE 172
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP +R++
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPQSTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + +V+E + LD I + KGR
Sbjct: 194 LIGGKPD---RVVECIKIILDLISESPIKGRA 222
Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 384 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 437
>gi|281337729|gb|EFB13313.1| hypothetical protein PANDA_003005 [Ailuropoda melanoleuca]
Length = 453
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
IL+I A++E +++++++P L+E Q + D + N G D
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG-SDFDC 145
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQS AG IIG G KIKELR+
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRE 172
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP +R++
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + +V+E + LD I + KGR
Sbjct: 194 LIGGKPD---RVVECIKIILDLISESPIKGRA 222
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 384 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 437
>gi|1083569|pir||A54143 kappa-B motif-binding phosphoprotein - mouse
Length = 464
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
IL+I A++E +++++++P L+E Q + D + N G D
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG-SDFDC 145
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQS AG IIG G KIKELR+
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRE 172
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP +R++
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + +V+E + LD I + KGR
Sbjct: 194 LIGGKPD---RVVECIKIILDLISESPIKGRA 222
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 384 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 437
>gi|126723252|ref|NP_001075594.1| heterogeneous nuclear ribonucleoprotein K [Oryctolagus cuniculus]
gi|12230546|sp|O19049.1|HNRPK_RABIT RecName: Full=Heterogeneous nuclear ribonucleoprotein K;
Short=hnRNP K
gi|2644968|emb|CAA05815.1| hnRNP-K protein [Oryctolagus cuniculus]
Length = 463
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
IL+I A++E +++++++P L+E Q + D + N G D
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHFKG-SDFDC 145
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQS AG IIG G KIKELR+
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRE 172
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ F+G D ELRLLI +AG +IG G+ I LR + + ++ + CP +R++
Sbjct: 134 NYQHFKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + +V+E + LD I + KGR
Sbjct: 194 LIGGKPD---RVVECIKIILDLISESPIKGRA 222
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 384 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 437
>gi|345329393|ref|XP_001506808.2| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Ornithorhynchus anatinus]
Length = 464
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
IL+I A++E +++++++P L+E Q + D + N G D
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG-SDFDC 145
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQS AG IIG G KIKELR+
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRE 172
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP +R++
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + +V+E + LD I + KGR
Sbjct: 194 LIGGKPD---RVVECIKIILDLISESPIKGRA 222
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 384 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 437
>gi|404351641|ref|NP_998156.3| heterogeneous nuclear ribonucleoprotein K [Danio rerio]
Length = 431
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 84/136 (61%), Gaps = 20/136 (14%)
Query: 11 FKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPERIL++ A
Sbjct: 34 FKRSRNTDEMVELRVLLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSVSA 93
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+++ +++ +++P L+E + Y+G D ++RL++HQS A
Sbjct: 94 DIDTIGEILLKIIPTLEEYQH--------------YSGTDF------DCELRLLIHQSLA 133
Query: 131 GCIIGKGGTKIKELRD 146
G IIG G KIKELR+
Sbjct: 134 GGIIGVKGAKIKELRE 149
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 4 FIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP- 60
I L ++ + G D ELRLLI +AG +IG G+ I LR + + ++ + CP
Sbjct: 105 IIPTLEEYQHYSGTDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPH 164
Query: 61 GPERILTIFAELENGLKVIEEVLPALDE 88
+R++ + + E ++ I+ +L + E
Sbjct: 165 STDRVVLVGGKPERVVECIKVILELIAE 192
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 352 GGPV-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 405
>gi|32451938|gb|AAH54653.1| Heterogeneous nuclear ribonucleoprotein K [Danio rerio]
gi|182890942|gb|AAI65841.1| Hnrnpk protein [Danio rerio]
Length = 420
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 82/137 (59%), Gaps = 20/137 (14%)
Query: 11 FKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
+KR R VELR+L+ S+ AG+VIGKGG +I LR D+ A+V+VPD GPERIL++ A
Sbjct: 33 YKRSRNSDEMVELRILLQSKNAGAVIGKGGKDIKALRTDYNATVSVPDSSGPERILSVSA 92
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
++ +++ +++P L+E + G D ++RL++HQS A
Sbjct: 93 DIPTVAEILLKIIPTLEEYQHHKGVDF--------------------DCELRLLIHQSLA 132
Query: 131 GCIIGKGGTKIKELRDT 147
G IIG G KIKELRD+
Sbjct: 133 GSIIGLKGAKIKELRDS 149
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 4 FIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP- 60
I L ++ +G D ELRLLI +AGS+IG G+ I LR+ + ++ + CP
Sbjct: 104 IIPTLEEYQHHKGVDFDCELRLLIHQSLAGSIIGLKGAKIKELRDSTQTTIKLFQECCPQ 163
Query: 61 GPERILTIFAELENGLKVIEEVL 83
+R++ + + E ++ I+ +L
Sbjct: 164 STDRVVLVGGKAERVVQCIKTML 186
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 7/62 (11%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTIFA---ELEN 74
+ ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI +++N
Sbjct: 342 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLQGSEDRIITITGTQDQIQN 400
Query: 75 GL 76
L
Sbjct: 401 AL 402
>gi|195401727|ref|XP_002059464.1| GJ17213 [Drosophila virilis]
gi|194142470|gb|EDW58876.1| GJ17213 [Drosophila virilis]
Length = 511
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 80/128 (62%), Gaps = 26/128 (20%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKV 78
N+ +R+LIPS +AG+VIGKGG +I ++R +KA+V+V D GPER + I ++++ L++
Sbjct: 20 NEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDSQGPERTIQISTDIDSTLEI 79
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
I E+L KY + R E +D+RL++HQS AGC+IGKGG
Sbjct: 80 ITEML--------KYFEERDEE------------------FDVRLLIHQSLAGCVIGKGG 113
Query: 139 TKIKELRD 146
KIKE+RD
Sbjct: 114 QKIKEIRD 121
>gi|66910286|gb|AAH96867.1| Heterogeneous nuclear ribonucleoprotein K, like [Danio rerio]
gi|182889168|gb|AAI64732.1| Hnrpkl protein [Danio rerio]
Length = 431
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 84/136 (61%), Gaps = 20/136 (14%)
Query: 11 FKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPERIL++ A
Sbjct: 34 FKRSRNTDEMVELRVLLRSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSVSA 93
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+++ +++ +++P L+E + Y+G D ++RL++HQS A
Sbjct: 94 DIDTIGEILLKIIPTLEEYQH--------------YSGTDF------DCELRLLIHQSLA 133
Query: 131 GCIIGKGGTKIKELRD 146
G IIG G KIKELR+
Sbjct: 134 GGIIGVKGAKIKELRE 149
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 4 FIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP- 60
I L ++ + G D ELRLLI +AG +IG G+ I LR + + ++ + CP
Sbjct: 105 IIPTLEEYQHYSGTDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPH 164
Query: 61 GPERILTIFAELENGLKVIEEVLPALDE 88
+R++ + + E ++ I+ +L + E
Sbjct: 165 STDRVVLVGGKPERVVECIKVILELIAE 192
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 352 GGPV-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 405
>gi|392353290|ref|XP_003751453.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Rattus
norvegicus]
Length = 463
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
IL+I A++E +++++++P L+E Q + D + N G D
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEGLQLPSPAATSQLPLESDAVECLNYQHYKG-SDFDC 145
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQS AG IIG G KIKEL++
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELQE 172
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +IG G+ I L+ + + ++ + CP +R++
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELQENTQTTIKLFQECCPHSTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDE 88
I + + ++ I+ +L L E
Sbjct: 194 LIGGKPDRVVECIKIILDLLSE 215
Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ D P +RI+TI
Sbjct: 384 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKT-DEPLEGSEDRIITI 437
>gi|392347947|ref|XP_003749978.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Rattus
norvegicus]
Length = 463
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 89/147 (60%), Gaps = 6/147 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VEL +L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELHILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
IL+I A++E +++++++P L+E Q + D + N G D
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEGLQLPSPAATSQLPLESDAVECLNYQHYKG-SDFDC 145
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQS AG IIG G KIKELR+
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRE 172
Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP +R++
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + +V+E + LD I + KGR
Sbjct: 194 LIGGKPD---RVVECIKIILDLISESPIKGRA 222
>gi|392333155|ref|XP_003752811.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Rattus
norvegicus]
Length = 463
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 89/147 (60%), Gaps = 6/147 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VEL +L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELHILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
IL+I A++E +++++++P L+E Q + D + N G D
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEGLQLPSPAATSQLPLESDAVECLNYQHYKG-SDFDC 145
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQS AG IIG G KIKELR+
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRE 172
Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP +R++
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + +V+E + LD I + KGR
Sbjct: 194 LIGGKPD---RVVECIKIILDLISESPIKGRA 222
Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 384 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 437
>gi|473912|gb|AAA21731.1| phosphoprotein [Mus cookii]
Length = 464
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
IL+I A++E +++++++P L+E Q + D + N G D
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVEVLNYPHYKG-SDFDC 145
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQ+ AG IIG G KIKELR+
Sbjct: 146 ELRLLIHQTLAGGIIGVKGAKIKELRE 172
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 7 QLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPE 63
++ N+ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP +
Sbjct: 131 EVLNYPHYKGSDFDCELRLLIHQTLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTD 190
Query: 64 RILTIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
R++ I + + +V+E + LD I + KGR
Sbjct: 191 RVVLIGGKPD---RVVECIKIILDLISESPIKGRA 222
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 384 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 437
>gi|59381084|gb|AAW84289.1| heterogeneous nuclear ribonucleoprotein K transcript variant [Homo
sapiens]
Length = 464
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 89/147 (60%), Gaps = 6/147 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
IL+I ++E +++++++P L+E Q + D + N G D
Sbjct: 87 ILSISTDIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG-SDFDC 145
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQS AG IIG G KIKELR+
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRE 172
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP +R++
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + +V+E + LD I + KGR
Sbjct: 194 LIGGKPD---RVVECIKIILDLISESPIKGRA 222
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 384 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 437
>gi|359324036|ref|XP_003640271.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Canis lupus familiaris]
Length = 464
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 89/147 (60%), Gaps = 6/147 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI L D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALHTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
IL+I A++E +++++++P L+E Q + D + N G D
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG-SDFDC 145
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQS AG IIG G KIKELR+
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRE 172
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CPGP-ERIL 66
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP P +R++
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHPTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + +V+E + LD I + KGR
Sbjct: 194 LIGGKPD---RVVECIKIILDLISESPIKGRA 222
>gi|359324034|ref|XP_003640270.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Canis lupus familiaris]
Length = 466
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 89/147 (60%), Gaps = 6/147 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI L D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALHTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
IL+I A++E +++++++P L+E Q + D + N G D
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG-SDFDC 145
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQS AG IIG G KIKELR+
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRE 172
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CPGP-ERIL 66
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP P +R++
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHPTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + +V+E + LD I + KGR
Sbjct: 194 LIGGKPD---RVVECIKIILDLISESPIKGRA 222
>gi|351695057|gb|EHA97975.1| Heterogeneous nuclear ribonucleoprotein K [Heterocephalus glaber]
Length = 445
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 88/147 (59%), Gaps = 6/147 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R + ELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPE
Sbjct: 27 MEEEQAFKRSRNTDDVFELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPEC 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
IL+I A++E +++++++P L+E Q + D + N G D
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYKHYKG-SDFDC 145
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
D+RL++HQS AG IIG G KIKE R+
Sbjct: 146 DLRLLIHQSLAGGIIGVKGVKIKEFRE 172
Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N+K ++G D +LRLLI +AG +IG G I R + + ++ + CP +R++
Sbjct: 134 NYKHYKGSDFDCDLRLLIHQSLAGGIIGVKGVKIKEFRENTQTTIKLFQECCPHSTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKG 96
I + + +V+E LD I + KG
Sbjct: 194 LIGGKSD---RVVECTKIILDLISESLVKG 220
>gi|348528027|ref|XP_003451520.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Oreochromis niloticus]
Length = 429
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 83/137 (60%), Gaps = 20/137 (14%)
Query: 11 FKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPERIL++ A
Sbjct: 34 FKRSRNTDEMVELRVLLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSVNA 93
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
++ +++ +++P L+E + Y+G D ++RL++HQS A
Sbjct: 94 SIDTIGEILLKIIPTLEEYQH--------------YSGIDF------DCELRLLIHQSLA 133
Query: 131 GCIIGKGGTKIKELRDT 147
G IIG G KIKELR+
Sbjct: 134 GGIIGVKGAKIKELREN 150
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 4 FIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP- 60
I L ++ + G D ELRLLI +AG +IG G+ I LR + + ++ + CP
Sbjct: 105 IIPTLEEYQHYSGIDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPH 164
Query: 61 GPERILTIFAELENGLKVIEEVLPALDE 88
+R++ + + E ++ I+ +L + E
Sbjct: 165 STDRVVLVGGKPERVVECIKVILELVSE 192
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 350 GGPV-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 403
>gi|308499839|ref|XP_003112105.1| hypothetical protein CRE_29640 [Caenorhabditis remanei]
gi|308268586|gb|EFP12539.1| hypothetical protein CRE_29640 [Caenorhabditis remanei]
Length = 721
Score = 99.0 bits (245), Expect = 6e-19, Method: Composition-based stats.
Identities = 52/129 (40%), Positives = 77/129 (59%), Gaps = 23/129 (17%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEE 81
E+RLL+ S+ AG++IGKGG NI RLR +F A V VPD PER+ T+ A+ + L ++ +
Sbjct: 373 EVRLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPDSNTPERVCTVTADEKTVLNILRD 432
Query: 82 VLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKI 141
VLP L+ D ++ +D ++R+++HQS AG +IG+ GTKI
Sbjct: 433 VLPRLE----------------DNFSE-------RDPCEVRMLIHQSHAGALIGRNGTKI 469
Query: 142 KELRDTFDA 150
KELR+ A
Sbjct: 470 KELREKCSA 478
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPGPERILTI 68
IPS + G++IG+GG IAR+R + A +T+ P PERI+TI
Sbjct: 647 IPSDLGGTIIGRGGERIARIRQESGAQITLEPSTGQPERIITI 689
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDC-PGP-ERILTIFAELENGLKV 78
E+R+LI AG++IG+ G+ I LR A + + C PG +R+L E +N L +
Sbjct: 448 EVRMLIHQSHAGALIGRNGTKIKELREKCSARLKIFTGCAPGSTDRVLITSGEQKNVLAI 507
Query: 79 IEEVLPALDEI 89
IEEV+ L EI
Sbjct: 508 IEEVMKELKEI 518
Score = 39.7 bits (91), Expect = 0.43, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 96 GRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
GR DG+ + + +++RL+V AG IIGKGG IK LR F+A
Sbjct: 353 GRHKRPKTDGFTEA----IQQGKFEVRLLVSSKSAGAIIGKGGENIKRLRAEFNA 403
>gi|72013105|ref|XP_781909.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Strongylocentrotus purpuratus]
Length = 447
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 83/142 (58%), Gaps = 21/142 (14%)
Query: 6 QQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERI 65
Q+ + KR RG N + RL+I S AG VIGKGG NI RLR D+ A V++PDC GPERI
Sbjct: 20 QRQNQNKRPRGDYNQIIFRLMIRSINAGGVIGKGGENIKRLRVDYDAKVSIPDCNGPERI 79
Query: 66 LTI-FAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLI 124
+ I ++N + I++++P++ E + + +++ IR++
Sbjct: 80 IKIGTRNVDNAIDCIKDIIPSVGEKKHSQDQ--------------------QNNSFIRIM 119
Query: 125 VHQSQAGCIIGKGGTKIKELRD 146
VHQS AG IIG+ G KIKELR+
Sbjct: 120 VHQSHAGAIIGRAGFKIKELRE 141
>gi|268567874|ref|XP_002640100.1| Hypothetical protein CBG12588 [Caenorhabditis briggsae]
Length = 398
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 78/129 (60%), Gaps = 23/129 (17%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEE 81
E+RLL+ S+ AG++IGKGG NI RLR +F A V VPD PER+ T+ A+ + L ++++
Sbjct: 51 EVRLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPDSNTPERVCTVTADEKTVLNILKD 110
Query: 82 VLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKI 141
VLP L+ D ++ +D ++R+++HQS AG +IG+ GTKI
Sbjct: 111 VLPRLE----------------DNFSE-------RDPCEVRVLIHQSHAGALIGRNGTKI 147
Query: 142 KELRDTFDA 150
KELR+ A
Sbjct: 148 KELREKCSA 156
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFAELENG 75
+ E+R+LI AG++IG+ G+ I LR A + + P +R+L E +N
Sbjct: 123 DPCEVRVLIHQSHAGALIGRNGTKIKELREKCSARLKIFTGCAPGSTDRVLITSGEQKNV 182
Query: 76 LKVIEEVLPALDEI 89
L +IEEV+ L EI
Sbjct: 183 LAIIEEVMKELKEI 196
Score = 42.0 bits (97), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 24 RLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPGPERILTI 68
++ IPS + G++IG+GG IAR+R + A +T+ P PERI+TI
Sbjct: 321 QVTIPSDLGGTIIGRGGERIARIRQESGAQITLEPSNGQPERIITI 366
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 119 YDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
+++RL+V AG IIGKGG IK LR F+A
Sbjct: 50 FEVRLLVSSKSAGAIIGKGGENIKRLRAEFNA 81
>gi|32564028|ref|NP_491825.2| Protein F26B1.2, isoform c [Caenorhabditis elegans]
gi|373218907|emb|CCD64193.1| Protein F26B1.2, isoform c [Caenorhabditis elegans]
Length = 380
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 78/129 (60%), Gaps = 23/129 (17%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEE 81
E+RLL+ S+ AG++IGKGG NI RLR +F A V VPD PER+ T+ A+ + L ++++
Sbjct: 34 EVRLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPDSNTPERVCTVTADEKTVLNILKD 93
Query: 82 VLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKI 141
VLP L+ D ++ +D ++R++VHQS AG +IG+ G+KI
Sbjct: 94 VLPRLE----------------DNFSE-------RDPCEVRMLVHQSHAGALIGRNGSKI 130
Query: 142 KELRDTFDA 150
KELR+ A
Sbjct: 131 KELREKCSA 139
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFAELENGLK 77
E+R+L+ AG++IG+ GS I LR A + + P +R+L E +N L
Sbjct: 108 CEVRMLVHQSHAGALIGRNGSKIKELREKCSARLKIFTGCAPGSTDRVLITSGEQKNVLG 167
Query: 78 VIEEVLPALDEI 89
+IEEV+ L EI
Sbjct: 168 IIEEVMKELKEI 179
Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 24 RLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG-PERILTIF---AELENGLKVI 79
++ IPS + G++IG+GG IAR+R + A +T+ G PERI+TI ++ + ++
Sbjct: 303 QVTIPSDLGGTIIGRGGERIARIRQESGAQITLEQSNGQPERIITIKGTEQQIHSAQYLL 362
Query: 80 EEVLPALDEIRQKYG 94
++ + + R+++G
Sbjct: 363 QQCVRNSTQGRERFG 377
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 119 YDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
+++RL+V AG IIGKGG IK LR F+A
Sbjct: 33 FEVRLLVSSKSAGAIIGKGGENIKRLRAEFNA 64
>gi|25144314|ref|NP_740869.1| Protein F26B1.2, isoform a [Caenorhabditis elegans]
gi|373218905|emb|CCD64191.1| Protein F26B1.2, isoform a [Caenorhabditis elegans]
Length = 397
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 78/129 (60%), Gaps = 23/129 (17%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEE 81
E+RLL+ S+ AG++IGKGG NI RLR +F A V VPD PER+ T+ A+ + L ++++
Sbjct: 51 EVRLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPDSNTPERVCTVTADEKTVLNILKD 110
Query: 82 VLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKI 141
VLP L+ D ++ +D ++R++VHQS AG +IG+ G+KI
Sbjct: 111 VLPRLE----------------DNFSE-------RDPCEVRMLVHQSHAGALIGRNGSKI 147
Query: 142 KELRDTFDA 150
KELR+ A
Sbjct: 148 KELREKCSA 156
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFAELENGLK 77
E+R+L+ AG++IG+ GS I LR A + + P +R+L E +N L
Sbjct: 125 CEVRMLVHQSHAGALIGRNGSKIKELREKCSARLKIFTGCAPGSTDRVLITSGEQKNVLG 184
Query: 78 VIEEVLPALDEI 89
+IEEV+ L EI
Sbjct: 185 IIEEVMKELKEI 196
Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 24 RLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG-PERILTIF---AELENGLKVI 79
++ IPS + G++IG+GG IAR+R + A +T+ G PERI+TI ++ + ++
Sbjct: 320 QVTIPSDLGGTIIGRGGERIARIRQESGAQITLEQSNGQPERIITIKGTEQQIHSAQYLL 379
Query: 80 EEVLPALDEIRQKYG 94
++ + + R+++G
Sbjct: 380 QQCVRNSTQGRERFG 394
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 119 YDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
+++RL+V AG IIGKGG IK LR F+A
Sbjct: 50 FEVRLLVSSKSAGAIIGKGGENIKRLRAEFNA 81
>gi|375065844|ref|NP_001243477.1| heterogeneous nuclear ribonucleoprotein K [Canis lupus familiaris]
Length = 464
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/145 (41%), Positives = 87/145 (60%), Gaps = 6/145 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
IL+I A++E +++++++P L+E Q + D + N G D
Sbjct: 87 ILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG-SDFDC 145
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKEL 144
++RL++HQS AG IIG G KIK+
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKKF 170
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +IG G+ I + + + ++ + CP +R++
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKKFGGNTQTTIKLFQECCPHSTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + +V+E + LD I + KGR
Sbjct: 194 LIGGKPD---RVVECIKIILDLISESPIKGRA 222
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 384 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 437
>gi|341894976|gb|EGT50911.1| hypothetical protein CAEBREN_13773 [Caenorhabditis brenneri]
Length = 397
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 78/129 (60%), Gaps = 23/129 (17%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEE 81
E+RLL+ S+ AG++IGKGG NI RLR +F A V VPD PER+ T+ A+ + L ++++
Sbjct: 51 EVRLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPDSNTPERVCTVTADEKTVLNILKD 110
Query: 82 VLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKI 141
VLP L+ D ++ +D ++R+++HQS AG +IG+ G+KI
Sbjct: 111 VLPRLE----------------DNFSE-------RDPCEVRMLIHQSHAGALIGRNGSKI 147
Query: 142 KELRDTFDA 150
KELR+ A
Sbjct: 148 KELREKCSA 156
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFAELENG 75
+ E+R+LI AG++IG+ GS I LR A + + P +R+L E +N
Sbjct: 123 DPCEVRMLIHQSHAGALIGRNGSKIKELREKCSARLKIFTGCAPGSTDRVLITSGEQKNV 182
Query: 76 LKVIEEVLPALDEI 89
L +IEEV+ L EI
Sbjct: 183 LAIIEEVMRELKEI 196
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 24 RLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPGPERILTI 68
++ IPS + G++IG+GG IAR+R D A +T+ P PERI+TI
Sbjct: 320 QVTIPSDLGGTIIGRGGERIARIRQDSGAQITLEPSNGQPERIITI 365
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 119 YDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
+++RL+V AG IIGKGG IK LR F+A
Sbjct: 50 FEVRLLVSSKSAGAIIGKGGENIKRLRAEFNA 81
>gi|355753438|gb|EHH57484.1| hypothetical protein EGM_07121 [Macaca fascicularis]
Length = 464
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 87/143 (60%), Gaps = 10/143 (6%)
Query: 11 FKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
FKR VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPERIL+I A
Sbjct: 33 FKRPGNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISA 92
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY--DIRL 123
++E +++++++P L+E Q + D + N G D+ ++RL
Sbjct: 93 DIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG---SDFACELRL 149
Query: 124 IVHQSQAGCIIGKGGTKIKELRD 146
++HQS AG IIG G KIKELR+
Sbjct: 150 LIHQSLAGGIIGVKGAKIKELRE 172
Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G ELRLLI +AG +IG G+ I LR + + ++ + CP +R++
Sbjct: 134 NYQHYKGSDFACELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSADRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + +V+E + LD I + KGR
Sbjct: 194 LIGGKPD---RVVECIKIILDLISESPIKGRA 222
Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 384 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 437
>gi|198430105|ref|XP_002128022.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein K,
like [Ciona intestinalis]
Length = 323
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 83/140 (59%), Gaps = 15/140 (10%)
Query: 7 QLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERIL 66
+ S KR R + +++R L+P++ AG +IGKGG+NI +R+ FKA + +PD ER+L
Sbjct: 45 EYSPSKRARHQTH-IQMRCLVPAKCAGGIIGKGGTNIKDMRDTFKAQINIPDSDSRERVL 103
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVH 126
I A +E+ +++ LP ++E G GR G D KDD I+L+VH
Sbjct: 104 RISASIESCGEILLRTLPVINEAALN-GPGRFGRD-------------PKDDMSIKLLVH 149
Query: 127 QSQAGCIIGKGGTKIKELRD 146
QSQAG IIG G KIKELR+
Sbjct: 150 QSQAGGIIGVKGFKIKELRE 169
Score = 39.3 bits (90), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 100 EDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
E+GGD Y+ + +R +V AG IIGKGGT IK++RDTF A
Sbjct: 40 EEGGDEYSPSK-RARHQTHIQMRCLVPAKCAGGIIGKGGTNIKDMRDTFKA 89
>gi|449667206|ref|XP_002160219.2| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Hydra
magnipapillata]
Length = 393
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 80/139 (57%), Gaps = 16/139 (11%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAE 71
K+ RG + V LR L+ S+ AG +IGKGG I RLR+++ A+V VPD ER+L+I A
Sbjct: 20 KKMRG--DSVTLRFLLMSKHAGGIIGKGGQTIKRLRSEYSATVNVPDSNSSERVLSIAAS 77
Query: 72 LENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAG 131
EN +K++ E LP E + GG N K+++++ +VH SQ G
Sbjct: 78 QENAIKILCECLPLFHEPPYQV-------SGGGSQN-------QKNEFEVDFLVHSSQVG 123
Query: 132 CIIGKGGTKIKELRDTFDA 150
IIG+ G KIKELR+ +A
Sbjct: 124 GIIGRSGFKIKELREQTNA 142
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 104 DGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
D +GGG + D +R ++ AG IIGKGG IK LR + A
Sbjct: 12 DSGSGGGAKKMRGDSVTLRFLLMSKHAGGIIGKGGQTIKRLRSEYSA 58
>gi|395733400|ref|XP_003776231.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 2
[Pongo abelii]
Length = 466
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 88/147 (59%), Gaps = 6/147 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG++ GKGG NI L D+ ASV+VPD GP+R
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAMTGKGGENIKALPTDYSASVSVPDSSGPQR 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
IL+I A+++ +++++++P L+E Q + D + N G DY
Sbjct: 87 ILSISADIDTIGEILKKIIPTLEEGLQLPSPTATSQLPLEPDAVECLNYQHYKG-SDFDY 145
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQS AG II G KIKELR+
Sbjct: 146 ELRLLIHQSLAGGIIRVKGVKIKELRE 172
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +I G I LR + + ++ + CP +R++
Sbjct: 134 NYQHYKGSDFDYELRLLIHQSLAGGIIRVKGVKIKELRENTQTTIKLFQECCPHSTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + V+E + LD I + KGR
Sbjct: 194 LIGGKPD---WVVECIKLILDLISESPIKGRA 222
>gi|395733398|ref|XP_003776230.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 1
[Pongo abelii]
Length = 464
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 88/147 (59%), Gaps = 6/147 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG++ GKGG NI L D+ ASV+VPD GP+R
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAMTGKGGENIKALPTDYSASVSVPDSSGPQR 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
IL+I A+++ +++++++P L+E Q + D + N G DY
Sbjct: 87 ILSISADIDTIGEILKKIIPTLEEGLQLPSPTATSQLPLEPDAVECLNYQHYKG-SDFDY 145
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQS AG II G KIKELR+
Sbjct: 146 ELRLLIHQSLAGGIIRVKGVKIKELRE 172
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +I G I LR + + ++ + CP +R++
Sbjct: 134 NYQHYKGSDFDYELRLLIHQSLAGGIIRVKGVKIKELRENTQTTIKLFQECCPHSTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + V+E + LD I + KGR
Sbjct: 194 LIGGKPD---WVVECIKLILDLISESPIKGRA 222
>gi|444517457|gb|ELV11574.1| Heterogeneous nuclear ribonucleoprotein K [Tupaia chinensis]
Length = 392
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 77/124 (62%), Gaps = 20/124 (16%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
VELR+L+ S+ AG+VIGKGG NI LR D+KASV+VPD GP RIL+I A+ E +++
Sbjct: 2 VELRILLQSKNAGAVIGKGGENIKALRTDYKASVSVPDSSGPGRILSISADTETIGGILK 61
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
+++P L+E + Y G + D ++RL++HQS AG IIG G K
Sbjct: 62 KIIPTLEEYQH--------------YKGSDL------DCELRLLIHQSLAGGIIGVKGAK 101
Query: 141 IKEL 144
IKEL
Sbjct: 102 IKEL 105
Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 1 MEFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV--PD 58
++ I L ++ ++G D ELRLLI +AG +IG G+ I L + + ++ +
Sbjct: 60 LKKIIPTLEEYQHYKGSDLDCELRLLIHQSLAGGIIGVKGAKIKELGENTRTTIKLFQER 119
Query: 59 CPGP-ERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
CP P R++ I + + +V+E + LD I + KGR
Sbjct: 120 CPHPTNRVVLIGGKPD---RVVECIKIILDLISESPIKGRA 157
Score = 35.4 bits (80), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 313 GGPI-ITTQVTIPKDFAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 366
>gi|256083129|ref|XP_002577802.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|353230296|emb|CCD76467.1| putative heterogeneous nuclear ribonucleoprotein k [Schistosoma
mansoni]
Length = 368
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 73/132 (55%), Gaps = 25/132 (18%)
Query: 15 RGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELEN 74
RG VELR LI ++ AG +IGKGG NI ++R ++ VT+PD GPER+L + +L +
Sbjct: 3 RGEGPKVELRFLISTKAAGVIIGKGGENIKKIREEYSVKVTIPDSNGPERVLVLDGDLGS 62
Query: 75 GLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCII 134
+++ E L + R D D+RL+VHQSQAGC+I
Sbjct: 63 VIEIFRENLEKMQSNRD-------------------------DGVDLRLLVHQSQAGCVI 97
Query: 135 GKGGTKIKELRD 146
G+ G KIKELR+
Sbjct: 98 GRAGYKIKELRE 109
>gi|256083131|ref|XP_002577803.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|353230295|emb|CCD76466.1| putative heterogeneous nuclear ribonucleoprotein k [Schistosoma
mansoni]
Length = 322
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 73/132 (55%), Gaps = 25/132 (18%)
Query: 15 RGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELEN 74
RG VELR LI ++ AG +IGKGG NI ++R ++ VT+PD GPER+L + +L +
Sbjct: 3 RGEGPKVELRFLISTKAAGVIIGKGGENIKKIREEYSVKVTIPDSNGPERVLVLDGDLGS 62
Query: 75 GLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCII 134
+++ E L + R D D+RL+VHQSQAGC+I
Sbjct: 63 VIEIFRENLEKMQSNRD-------------------------DGVDLRLLVHQSQAGCVI 97
Query: 135 GKGGTKIKELRD 146
G+ G KIKELR+
Sbjct: 98 GRAGYKIKELRE 109
>gi|256083125|ref|XP_002577800.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|353230298|emb|CCD76469.1| putative heterogeneous nuclear ribonucleoprotein k [Schistosoma
mansoni]
Length = 371
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 73/132 (55%), Gaps = 25/132 (18%)
Query: 15 RGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELEN 74
RG VELR LI ++ AG +IGKGG NI ++R ++ VT+PD GPER+L + +L +
Sbjct: 3 RGEGPKVELRFLISTKAAGVIIGKGGENIKKIREEYSVKVTIPDSNGPERVLVLDGDLGS 62
Query: 75 GLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCII 134
+++ E L + R D D+RL+VHQSQAGC+I
Sbjct: 63 VIEIFRENLEKMQSNRD-------------------------DGVDLRLLVHQSQAGCVI 97
Query: 135 GKGGTKIKELRD 146
G+ G KIKELR+
Sbjct: 98 GRAGYKIKELRE 109
>gi|297670563|ref|XP_002813434.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 2
[Pongo abelii]
Length = 464
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 87/147 (59%), Gaps = 6/147 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VEL +L+ S+ AG++ GKGG NI L D+ ASV+VPD GP+R
Sbjct: 27 MEEEQAFKRSRNTDEMVELCILLQSKNAGAMTGKGGKNIKALPTDYNASVSVPDSSGPQR 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
ILTI A+++ +++++++P L+E Q + D + N G DY
Sbjct: 87 ILTISADIDTIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG-SDFDY 145
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQS AG II G KIKELR+
Sbjct: 146 ELRLLIHQSLAGGIIRVKGVKIKELRE 172
Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +I G I LR + + ++ + CP +R++
Sbjct: 134 NYQHYKGSDFDYELRLLIHQSLAGGIIRVKGVKIKELRENTQTTIKLFQECCPHSTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + V+E + LD I + KGR
Sbjct: 194 LIGGKPD---WVVECIKIILDLIPESPIKGRA 222
Score = 35.4 bits (80), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTIFAEL 72
GGP + ++ IP +AGSVIGKGG I ++ ++ AS+ + D P +RI+TI
Sbjct: 383 GGP--ITTQVTIPKDLAGSVIGKGGQRIKQICHESGASIKI-DEPLEGSEDRIITITGTQ 439
Query: 73 ENGLKVIEEVLPALDEIRQKYGK 95
E + ++ ++Q GK
Sbjct: 440 EQIQNAQYLLQNSVKHVKQYSGK 462
>gi|256083127|ref|XP_002577801.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|353230297|emb|CCD76468.1| putative heterogeneous nuclear ribonucleoprotein k [Schistosoma
mansoni]
Length = 363
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 73/132 (55%), Gaps = 25/132 (18%)
Query: 15 RGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELEN 74
RG VELR LI ++ AG +IGKGG NI ++R ++ VT+PD GPER+L + +L +
Sbjct: 3 RGEGPKVELRFLISTKAAGVIIGKGGENIKKIREEYSVKVTIPDSNGPERVLVLDGDLGS 62
Query: 75 GLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCII 134
+++ E L + R D D+RL+VHQSQAGC+I
Sbjct: 63 VIEIFRENLEKMQSNRD-------------------------DGVDLRLLVHQSQAGCVI 97
Query: 135 GKGGTKIKELRD 146
G+ G KIKELR+
Sbjct: 98 GRAGYKIKELRE 109
>gi|395733402|ref|XP_003776232.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Pongo
abelii]
Length = 462
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 87/147 (59%), Gaps = 6/147 (4%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VEL +L+ S+ AG++ GKGG NI L D+ ASV+VPD GP+R
Sbjct: 27 MEEEQAFKRSRNTDEMVELCILLQSKNAGAMTGKGGKNIKALPTDYNASVSVPDSSGPQR 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
ILTI A+++ +++++++P L+E Q + D + N G DY
Sbjct: 87 ILTISADIDTIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG-SDFDY 145
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQS AG II G KIKELR+
Sbjct: 146 ELRLLIHQSLAGGIIRVKGVKIKELRE 172
Score = 36.2 bits (82), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +I G I LR + + ++ + CP +R++
Sbjct: 134 NYQHYKGSDFDYELRLLIHQSLAGGIIRVKGVKIKELRENTQTTIKLFQECCPHSTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + V+E + LD I + KGR
Sbjct: 194 LIGGKPD---WVVECIKIILDLIPESPIKGRA 222
>gi|72164650|ref|XP_794805.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Strongylocentrotus purpuratus]
Length = 341
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 76/133 (57%), Gaps = 17/133 (12%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA-ELENGLK 77
+ V RLL+ S AG VIGKGG NI RLR+++ A+V +PD GP+R+L I A ENGL
Sbjct: 7 SQVTFRLLVSSNKAGGVIGKGGQNIKRLRSEYNATVNIPDSSGPDRVLQIVANSRENGLD 66
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKG 137
+I+E++P + E + G D Y + ++V SQ G IIG+G
Sbjct: 67 IIKELIPLIREEVSPFSDGE-----ADPYT-----------TTLSVLVQTSQVGAIIGRG 110
Query: 138 GTKIKELRDTFDA 150
G+KIKELR + +
Sbjct: 111 GSKIKELRQSTET 123
>gi|291392572|ref|XP_002712680.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K [Oryctolagus
cuniculus]
Length = 469
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 84/146 (57%), Gaps = 4/146 (2%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VEL +L+ S+ AG+V+GKGG I LR D+ ASV+VPD GPER
Sbjct: 27 VEEEQAFKRSRNTDEVVELCILLQSKNAGAVLGKGGKTIKALRIDYNASVSVPDSSGPER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDG--GDGYNGGGVGGLGKDDYD-- 120
IL+I A+ E +++++++P L+E Q + D D+D
Sbjct: 87 ILSISADTETVGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLHYHHFKGSDFDCE 146
Query: 121 IRLIVHQSQAGCIIGKGGTKIKELRD 146
+RL++HQ AG IIG G KIKELR+
Sbjct: 147 LRLLIHQRLAGGIIGVKGAKIKELRE 172
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
++ F+G D ELRLLI R+AG +IG G+ I LR + + ++ + CP +R+
Sbjct: 134 HYHHFKGSDFDCELRLLIHQRLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVA 193
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + +V+E + LD I + KGR
Sbjct: 194 LIRGKPD---RVVECIKIILDLISESPIKGRA 222
>gi|390346266|ref|XP_003726513.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Strongylocentrotus purpuratus]
Length = 137
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Query: 10 NFKRFRGGP-NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTI 68
N KR RGG V RLLIPS AG +IGK G NI +LR + A++TVPDC GPERILT+
Sbjct: 33 NNKRPRGGDGTKVSFRLLIPSSNAGGIIGKEGLNINQLRKKYNATITVPDCSGPERILTV 92
Query: 69 FAELENGLKVIEEVLPALDEIR 90
++E GL+ I++++P LDE+R
Sbjct: 93 TTDMEAGLECIQDIIPVLDEVR 114
>gi|390355846|ref|XP_003728637.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein K-like [Strongylocentrotus purpuratus]
Length = 345
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 73/130 (56%), Gaps = 17/130 (13%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL-ENGLK 77
+DV RLL+ S AG +I KGG NI RLR+D+ A+V++PD GP+R+L I A ENGL
Sbjct: 7 DDVTFRLLVSSNKAGGLIAKGGQNIKRLRSDYNATVSIPDSSGPDRVLQIVANSKENGLD 66
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKG 137
+IEE++P + E + G + ++V SQ G IIG+
Sbjct: 67 IIEELIPLIREEVSPFSDGEA----------------DPCTTTLSVLVQTSQVGAIIGRA 110
Query: 138 GTKIKELRDT 147
G KIKELR++
Sbjct: 111 GIKIKELRES 120
>gi|226470354|emb|CAX70457.1| Heterogeneous nuclear ribonucleoprotein K [Schistosoma japonicum]
Length = 370
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 73/132 (55%), Gaps = 25/132 (18%)
Query: 15 RGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELEN 74
RG VELR LI ++ AG +IGKGG NI ++R ++ VT+PD GPER+L + +L +
Sbjct: 3 RGEGPKVELRFLISTKAAGVIIGKGGENIKKIREEYSVKVTIPDSNGPERVLVLDGDLGS 62
Query: 75 GLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCII 134
+++ E L + R + D+RL+VH SQAGC+I
Sbjct: 63 IIEIFRENLEKMQNNRD-------------------------EGVDLRLLVHYSQAGCVI 97
Query: 135 GKGGTKIKELRD 146
G+GG KIKELR+
Sbjct: 98 GRGGYKIKELRE 109
>gi|29841300|gb|AAP06332.1| similar to GenBank Accession Number X72727 transformation
upregulated nuclear protein in Homo sapiens [Schistosoma
japonicum]
Length = 265
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 81/148 (54%), Gaps = 8/148 (5%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTI 68
+ F+R +V +R LIP R AG +IGKGG NI ++R+ + + +PD GPERI+TI
Sbjct: 15 TKFQRSSVDLTNVSIRFLIPGRAAGIMIGKGGENIKKIRSQYNVKLNIPDSRGPERIMTI 74
Query: 69 FAELENGLKVIEEVLPALDEIRQ------KYGKGRGGEDGGDGYN--GGGVGGLGKDDYD 120
+L+ ++ +V P L +I K G G N ++ D
Sbjct: 75 EGDLQAICSIMRDVCPKLKDIMNAKLSDPKRIMGTQGARRRPRRNEDPERDDDEDENMID 134
Query: 121 IRLIVHQSQAGCIIGKGGTKIKELRDTF 148
R++VH+SQAG +IG+GG +IK+LRD +
Sbjct: 135 FRILVHESQAGSVIGRGGERIKDLRDKY 162
Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVT-VPDCPGP---ERILTIFAELEN 74
N ++ R+L+ AGSVIG+GG I LR+ +K V V P +R++ + A+ +N
Sbjct: 131 NMIDFRILVHESQAGSVIGRGGERIKDLRDKYKMRVIKVYQMLAPLSTDRVVQMVADPDN 190
Query: 75 GLKVIEEVLPALDEI 89
++ + V+ A++ +
Sbjct: 191 VVQCLRAVIEAVESV 205
>gi|256071468|ref|XP_002572062.1| hypothetical protein [Schistosoma mansoni]
Length = 453
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 81/148 (54%), Gaps = 8/148 (5%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTI 68
S F+R +V +R LIP R AG +IGKGG NI ++R+ + + +PD GPERI+TI
Sbjct: 15 SKFQRSSVDLTNVSIRFLIPGRAAGIMIGKGGENIKKIRSQYNVKLNIPDSRGPERIMTI 74
Query: 69 FAELENGLKVIEEVLPALDEI--------RQKYGKGRGGEDGGDGYNGGGVGGLGKDDYD 120
+L+ ++ +V P L +I ++ G + ++ D
Sbjct: 75 EGDLQAICSIMRDVCPKLKDIMNAKLSDPKRIMGTQGSRRRPRRSEDPERDDEEDENMID 134
Query: 121 IRLIVHQSQAGCIIGKGGTKIKELRDTF 148
R++VH+SQAG +IG+GG +IK+LRD +
Sbjct: 135 FRILVHESQAGSVIGRGGERIKDLRDKY 162
Score = 39.3 bits (90), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 11/101 (10%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASV-TVPDCPGP---ERILTIFAELEN 74
N ++ R+L+ AGSVIG+GG I LR+ +K V V P +R++ + A+ +N
Sbjct: 131 NMIDFRILVHESQAGSVIGRGGERIKDLRDKYKMRVIKVYQMLAPLSTDRVVQMVADPDN 190
Query: 75 GLKVIEEVLPALDEI-----RQKYGKGRGGEDGGDGYNGGG 110
++ + V+ A++ R+ Y E GD N GG
Sbjct: 191 VVQCLRAVIEAVESAPPRGRREDYDAANFSE--GDALNYGG 229
>gi|226472238|emb|CAX77155.1| Heterogeneous nuclear ribonucleoprotein K [Schistosoma japonicum]
Length = 306
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 81/148 (54%), Gaps = 8/148 (5%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTI 68
+ F+R +V +R LIP R AG +IGKGG NI ++R+ + + +PD GPERI+TI
Sbjct: 23 TKFQRSSVDLTNVSIRFLIPGRAAGIMIGKGGENIKKIRSQYNVKLNIPDSRGPERIMTI 82
Query: 69 FAELENGLKVIEEVLPALDEIRQ------KYGKGRGGEDGGDGYN--GGGVGGLGKDDYD 120
+L+ ++ +V P L +I K G G N ++ D
Sbjct: 83 EGDLQAICSIMRDVCPKLKDIMNAKLSDPKRIMGTQGARRRPRRNEDPERDDDEDENMID 142
Query: 121 IRLIVHQSQAGCIIGKGGTKIKELRDTF 148
R++VH+SQAG +IG+GG +IK+LRD +
Sbjct: 143 FRILVHESQAGSVIGRGGERIKDLRDKY 170
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 11/101 (10%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASV-TVPDCPGP---ERILTIFAELEN 74
N ++ R+L+ AGSVIG+GG I LR+ +K V V P +R++ + A+ +N
Sbjct: 139 NMIDFRILVHESQAGSVIGRGGERIKDLRDKYKMRVIKVYQMLAPLSTDRVVQMVADPDN 198
Query: 75 GLKVIEEVLPALDEI-----RQKYGKGRGGEDGGDGYNGGG 110
++ + V+ A++ R+ Y E GD N GG
Sbjct: 199 VVQCLRAVIEAVESAPPRGRREDYDAANFSE--GDALNYGG 237
>gi|156372967|ref|XP_001629306.1| predicted protein [Nematostella vectensis]
gi|156216303|gb|EDO37243.1| predicted protein [Nematostella vectensis]
Length = 419
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 81/143 (56%), Gaps = 33/143 (23%)
Query: 10 NFKRFRGGPNDVE------LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPE 63
N KR R +DV+ LR+LI S+ AG +IGKGG+NI RLR ++ A V VPD E
Sbjct: 37 NVKRMRES-SDVDSNAPTTLRILIQSKDAGGIIGKGGTNIRRLRTEYNAVVNVPDTNSNE 95
Query: 64 RILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRL 123
R+LTI A ++ L ++ EV+P + E+ +YG ++I++
Sbjct: 96 RVLTITAPRQSALDILAEVVPKIGEV--QYG------------------------HEIQM 129
Query: 124 IVHQSQAGCIIGKGGTKIKELRD 146
+V +SQ G IIG+ G KIKE+R+
Sbjct: 130 LVQRSQVGSIIGRAGYKIKEIRE 152
Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDC--PGPERILTIFAELENGLKV 78
E+++L+ GS+IG+ G I +R A+V V DC ER++T+ E +K
Sbjct: 126 EIQMLVQRSQVGSIIGRAGYKIKEIREGSGANVKVFADCLPNSTERVVTMSGSAETIVKC 185
Query: 79 IEEVLPAL 86
+E VL A+
Sbjct: 186 VENVLVAI 193
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD-CPGP-ERILTIFAELE 73
G + ++ IP +AGS+IGKGG I +RN A + + D PG +RI+TI E
Sbjct: 339 AGGDQTSTQVTIPKDLAGSIIGKGGERIKMIRNRCNAVIKIDDPLPGSNDRIITITGNQE 398
>gi|353229707|emb|CCD75878.1| hypothetical protein Smp_005860.1 [Schistosoma mansoni]
Length = 437
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 81/148 (54%), Gaps = 8/148 (5%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTI 68
S F+R +V +R LIP R AG +IGKGG NI ++R+ + + +PD GPERI+TI
Sbjct: 15 SKFQRSSVDLTNVSIRFLIPGRAAGIMIGKGGENIKKIRSQYNVKLNIPDSRGPERIMTI 74
Query: 69 FAELENGLKVIEEVLPALDEI--------RQKYGKGRGGEDGGDGYNGGGVGGLGKDDYD 120
+L+ ++ +V P L +I ++ G + ++ D
Sbjct: 75 EGDLQAICSIMRDVCPKLKDIMNAKLSDPKRIMGTQGSRRRPRRSEDPERDDEEDENMID 134
Query: 121 IRLIVHQSQAGCIIGKGGTKIKELRDTF 148
R++VH+SQAG +IG+GG +IK+LRD +
Sbjct: 135 FRILVHESQAGSVIGRGGERIKDLRDKY 162
Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 11/101 (10%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASV-TVPDCPGP---ERILTIFAELEN 74
N ++ R+L+ AGSVIG+GG I LR+ +K V V P +R++ + A+ +N
Sbjct: 131 NMIDFRILVHESQAGSVIGRGGERIKDLRDKYKMRVIKVYQMLAPLSTDRVVQMVADPDN 190
Query: 75 GLKVIEEVLPALDEI-----RQKYGKGRGGEDGGDGYNGGG 110
++ + V+ A++ R+ Y E GD N GG
Sbjct: 191 VVQCLRAVIEAVESAPPRGRREDYDAANFSE--GDALNYGG 229
>gi|395529320|ref|XP_003766764.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein K-like [Sarcophilus harrisii]
Length = 474
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 83/149 (55%), Gaps = 10/149 (6%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+Q+ FKR R VELR+ + S+ AG+VIGKGG NI L D+ ASV+VP ER
Sbjct: 27 MQEEQAFKRSRNTDEMVELRISLHSKNAGAVIGKGGKNIKALLTDYNASVSVPHSSASER 86
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDY----- 119
+ +I A++E +++++++P L+E Q + G V L Y
Sbjct: 87 MXSISADIETIGEILKKIIPTLEEGLQLTSPTATSQ---LPLESGAVECLNYQHYKGSDF 143
Query: 120 --DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQS AG IIG G KIKELR+
Sbjct: 144 DCELRLLIHQSLAGGIIGVKGXKIKELRE 172
Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPER 64
N++ ++G D ELRLLI +AG +IG G I LR + + ++ + P R
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGXKIKELRENTQTTIKLFQECCPHSTSTNR 193
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
++ I N +V+E + LD I + KGR
Sbjct: 194 VVLIDG---NPDRVVECKI-ILDLISESPIKGRA 223
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 11/86 (12%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTIFA-- 70
GGP + ++ IP +AGS+IGKGG I +LR++ AS+ + D P +RI+TI
Sbjct: 392 GGPINT-TQVTIPKDLAGSIIGKGGQRIKQLRHESGASIKI-DEPLEGSEDRIITITGTQ 449
Query: 71 -ELENGLKVIEEVLPALDEIRQKYGK 95
+++N +++ ++ ++Q GK
Sbjct: 450 DQIQNAXYLLQN---SVKHVKQYSGK 472
>gi|29841392|gb|AAP06424.1| similar to GenBank Accession Number S41224 hnRNP protein in Xenopus
laevis [Schistosoma japonicum]
Length = 454
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 81/148 (54%), Gaps = 8/148 (5%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTI 68
+ F+R +V +R LIP R AG +IGKGG NI ++R+ + + +PD GPERI+TI
Sbjct: 15 TKFQRSSVDLTNVSIRFLIPGRAAGIMIGKGGENIKKIRSQYNVKLNIPDSRGPERIMTI 74
Query: 69 FAELENGLKVIEEVLPALDEIRQ------KYGKGRGGEDGGDGYN--GGGVGGLGKDDYD 120
+L+ ++ +V P L +I K G G N ++ D
Sbjct: 75 EGDLQAICSIMRDVCPKLKDIMNAKLSDPKRIMGTQGARRRPRRNEDPERDDDEDENMID 134
Query: 121 IRLIVHQSQAGCIIGKGGTKIKELRDTF 148
R++VH+SQAG +IG+GG +IK+LRD +
Sbjct: 135 FRILVHESQAGSVIGRGGERIKDLRDKY 162
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 11/101 (10%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASV-TVPDCPGP---ERILTIFAELEN 74
N ++ R+L+ AGSVIG+GG I LR+ +K V V P +R++ + A+ +N
Sbjct: 131 NMIDFRILVHESQAGSVIGRGGERIKDLRDKYKMRVIKVYQMLAPLSTDRVVQMVADPDN 190
Query: 75 GLKVIEEVLPALDEI-----RQKYGKGRGGEDGGDGYNGGG 110
++ + V+ A++ R+ Y E GD N GG
Sbjct: 191 VVQCLRAVIEAVESAPPRGRREDYDAANFSE--GDALNYGG 229
>gi|170592745|ref|XP_001901125.1| KH domain containing protein [Brugia malayi]
gi|158591192|gb|EDP29805.1| KH domain containing protein [Brugia malayi]
Length = 354
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 75/125 (60%), Gaps = 22/125 (17%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEE 81
ELRLL+ SR AG++IGK G ++ ++ + A+V+VPD PER++ + A +EN +K +E
Sbjct: 68 ELRLLVTSRGAGAIIGKKGESVKNIQTECDATVSVPDSQTPERVVQLVAAVENVVKCVEM 127
Query: 82 VLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKI 141
++ +DE+ + D +++++VHQS AG +IG+GG++I
Sbjct: 128 IIARIDEVHDNQNR----------------------DSELKVLVHQSHAGAVIGRGGSRI 165
Query: 142 KELRD 146
KELR+
Sbjct: 166 KELRE 170
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLR--NDFKASVTVPDCP-GPERILTIFAELENGL 76
D EL++L+ AG+VIG+GGS I LR N V CP ERI+ I + E +
Sbjct: 142 DSELKVLVHQSHAGAVIGRGGSRIKELREENGVDLKVYSECCPQSTERIIQINGKPEKIV 201
Query: 77 KVIEEVLPALDEI 89
+ ++ L EI
Sbjct: 202 ACLVTIINTLKEI 214
>gi|312079807|ref|XP_003142332.1| hypothetical protein LOAG_06748 [Loa loa]
gi|307762504|gb|EFO21738.1| hypothetical protein LOAG_06748 [Loa loa]
Length = 342
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 89/146 (60%), Gaps = 21/146 (14%)
Query: 1 MEFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP 60
M+ + + L+N K ELRL++ SR AG +IG+GG NI RLR++F A++TVPD
Sbjct: 18 MDSYEEALANGK--------YELRLVVTSRGAGGIIGRGGENIKRLRSEFDANLTVPDSQ 69
Query: 61 GPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYD 120
PER+LT+ A EN + E++P LDE R+ RG + + D +
Sbjct: 70 TPERVLTLTATTENISNCLREIIPRLDENREDDHDRRGKK-------------ADRPDSE 116
Query: 121 IRLIVHQSQAGCIIGKGGTKIKELRD 146
++++VH+S AG +IG+GG++IKELR+
Sbjct: 117 MKVLVHESHAGAVIGRGGSRIKELRE 142
Score = 35.8 bits (81), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFAELENGL 76
D E+++L+ AG+VIG+GGS I LR A + V P ERI+ + E+E +
Sbjct: 114 DSEMKVLVHESHAGAVIGRGGSRIKELREKTGAQLKVFSRCAPQSTERIVLLNGEVEKII 173
Query: 77 KVIEEVLPALDEI 89
I ++ L EI
Sbjct: 174 DCINIIIDVLKEI 186
>gi|226472244|emb|CAX77158.1| Heterogeneous nuclear ribonucleoprotein K [Schistosoma japonicum]
Length = 452
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 81/148 (54%), Gaps = 8/148 (5%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTI 68
+ F+R +V +R LIP R AG +IGKGG NI ++R+ + + +PD GPERI+TI
Sbjct: 15 TKFQRSSVDLTNVSIRFLIPGRAAGIMIGKGGENIKKIRSQYNVKLNIPDSRGPERIMTI 74
Query: 69 FAELENGLKVIEEVLPALDEIRQ------KYGKGRGGEDGGDGYN--GGGVGGLGKDDYD 120
+L+ ++ +V P L +I K G G N ++ D
Sbjct: 75 EGDLQAICSIMRDVCPKLKDIMNAKLSDPKRIMGTQGARRRPRRNEDPERDDDEDENMID 134
Query: 121 IRLIVHQSQAGCIIGKGGTKIKELRDTF 148
R++VH+SQAG +IG+GG +IK+LRD +
Sbjct: 135 FRILVHESQAGSVIGRGGERIKDLRDKY 162
Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 11/101 (10%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASV-TVPDCPGP---ERILTIFAELEN 74
N ++ R+L+ AGSVIG+GG I LR+ +K V V P +R++ + A+ +N
Sbjct: 131 NMIDFRILVHESQAGSVIGRGGERIKDLRDKYKMRVIKVYQMLAPLSTDRVVQMVADPDN 190
Query: 75 GLKVIEEVLPALDEI-----RQKYGKGRGGEDGGDGYNGGG 110
++ + V+ A++ R+ Y E GD N GG
Sbjct: 191 VVQCLRAVIEAVESAPPRGRREDYDAANFSE--GDALNYGG 229
>gi|402592326|gb|EJW86255.1| hypothetical protein WUBG_02833 [Wuchereria bancrofti]
Length = 313
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 75/125 (60%), Gaps = 22/125 (17%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEE 81
ELRLL+ SR AG++IGK G ++ ++ + A+V+VPD PER++ + A +EN +K +E
Sbjct: 41 ELRLLVTSRGAGAIIGKKGESVKNIQTECDATVSVPDSQTPERVVQLVAAVENVVKCVEM 100
Query: 82 VLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKI 141
++ +DE+ + D +++++VHQS AG +IG+GG++I
Sbjct: 101 IIARIDEVHDNQDR----------------------DSELKVLVHQSHAGAVIGRGGSRI 138
Query: 142 KELRD 146
KELR+
Sbjct: 139 KELRE 143
Score = 38.5 bits (88), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLR--NDFKASVTVPDCP-GPERILTIFAELENGL 76
D EL++L+ AG+VIG+GGS I LR N V CP ERI+ I + E +
Sbjct: 115 DSELKVLVHQSHAGAVIGRGGSRIKELREENGVDLKVYSECCPQSTERIIQINGKPEKIV 174
Query: 77 KVIEEVLPALDEI 89
+ ++ L EI
Sbjct: 175 ACLVTIINTLKEI 187
>gi|226473418|emb|CAX71394.1| Heterogeneous nuclear ribonucleoprotein K [Schistosoma japonicum]
Length = 452
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 81/148 (54%), Gaps = 8/148 (5%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTI 68
+ F+R +V +R LIP R AG +IGKGG NI ++R+ + + +PD GPERI+TI
Sbjct: 15 TKFQRSSVDLTNVSIRFLIPGRAAGIMIGKGGENIKKIRSQYNVKLNIPDSRGPERIMTI 74
Query: 69 FAELENGLKVIEEVLPALDEIRQ------KYGKGRGGEDGGDGYN--GGGVGGLGKDDYD 120
+L+ ++ +V P L +I K G G N ++ D
Sbjct: 75 EGDLQAICSIMRDVCPKLKDIMNAKLSDPKRIMGTQGARRRPRRNEDPERDDDEDENMID 134
Query: 121 IRLIVHQSQAGCIIGKGGTKIKELRDTF 148
R++VH+SQAG +IG+GG +IK+LRD +
Sbjct: 135 FRILVHESQAGSVIGRGGERIKDLRDKY 162
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASV-TVPDCPGP---ERILTIFAELEN 74
N ++ R+L+ AGSVIG+GG I LR+ +K V V P +R++ + A+ +N
Sbjct: 131 NMIDFRILVHESQAGSVIGRGGERIKDLRDKYKMRVIKVYQMLAPLSTDRVVQMVADPDN 190
Query: 75 GLKVIEEVLPALDE 88
++ + V+ A++
Sbjct: 191 VVQCLRAVIEAVES 204
>gi|226472228|emb|CAX77150.1| Heterogeneous nuclear ribonucleoprotein K [Schistosoma japonicum]
gi|226472230|emb|CAX77151.1| Heterogeneous nuclear ribonucleoprotein K [Schistosoma japonicum]
gi|226472232|emb|CAX77152.1| Heterogeneous nuclear ribonucleoprotein K [Schistosoma japonicum]
gi|226472234|emb|CAX77153.1| Heterogeneous nuclear ribonucleoprotein K [Schistosoma japonicum]
gi|226472236|emb|CAX77154.1| Heterogeneous nuclear ribonucleoprotein K [Schistosoma japonicum]
gi|226472240|emb|CAX77156.1| Heterogeneous nuclear ribonucleoprotein K [Schistosoma japonicum]
gi|226472242|emb|CAX77157.1| Heterogeneous nuclear ribonucleoprotein K [Schistosoma japonicum]
gi|226473416|emb|CAX71393.1| Heterogeneous nuclear ribonucleoprotein K [Schistosoma japonicum]
Length = 452
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 81/148 (54%), Gaps = 8/148 (5%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTI 68
+ F+R +V +R LIP R AG +IGKGG NI ++R+ + + +PD GPERI+TI
Sbjct: 15 TKFQRSSVDLTNVSIRFLIPGRAAGIMIGKGGENIKKIRSQYNVKLNIPDSRGPERIMTI 74
Query: 69 FAELENGLKVIEEVLPALDEIRQ------KYGKGRGGEDGGDGYN--GGGVGGLGKDDYD 120
+L+ ++ +V P L +I K G G N ++ D
Sbjct: 75 EGDLQAICSIMRDVCPKLKDIMNAKLSDPKRIMGTQGARRRPRRNEDPERDDDEDENMID 134
Query: 121 IRLIVHQSQAGCIIGKGGTKIKELRDTF 148
R++VH+SQAG +IG+GG +IK+LRD +
Sbjct: 135 FRILVHESQAGSVIGRGGERIKDLRDKY 162
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASV-TVPDCPGP---ERILTIFAELEN 74
N ++ R+L+ AGSVIG+GG I LR+ +K V V P +R++ + A+ +N
Sbjct: 131 NMIDFRILVHESQAGSVIGRGGERIKDLRDKYKMRVIKVYQMLAPLSTDRVVQMVADPDN 190
Query: 75 GLKVIEEVLPALDE 88
++ + V+ A++
Sbjct: 191 VVQCLRAVIEAVES 204
>gi|198427864|ref|XP_002125995.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein K
[Ciona intestinalis]
Length = 402
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 82/139 (58%), Gaps = 27/139 (19%)
Query: 13 RFRGG---PND-VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTI 68
RF G P+D +ELR+LIPS AG++IGKGG+NI LR +F A+V VPD G ERI++
Sbjct: 36 RFHQGGREPSDKIELRVLIPSHTAGAIIGKGGANIRDLRQEFNANVQVPDSHGFERIVSA 95
Query: 69 FAE-LENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQ 127
A+ +E+ + +V+ AL+E K VG L R++VH+
Sbjct: 96 VAKTIEDAANICGKVVEALNERMHHPEK---------------VGCL-------RMLVHK 133
Query: 128 SQAGCIIGKGGTKIKELRD 146
SQAG IIG G++IKELR+
Sbjct: 134 SQAGTIIGLKGSRIKELRE 152
>gi|393907134|gb|EFO25357.2| hypothetical protein LOAG_03127 [Loa loa]
Length = 341
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 77/127 (60%), Gaps = 21/127 (16%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEE 81
ELRLL+ SR AG +IGKGG NI RLR+++ A+VTVPD PERI TI A +EN L ++ E
Sbjct: 40 ELRLLVSSRGAGGIIGKGGENIKRLRSEYDANVTVPDSQTPERIATIVATIENVLAIVTE 99
Query: 82 VLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKI 141
++P LD+ R+ G ++R++VH S AG +IG+ G+KI
Sbjct: 100 IIPKLDDSRE---------------------GDSNRPIELRVLVHSSHAGAVIGRQGSKI 138
Query: 142 KELRDTF 148
KE+++
Sbjct: 139 KEMKEEL 145
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCP--GPERILTIFAELENGLK 77
+ELR+L+ S AG+VIG+ GS I ++ + + V CP ER+++I + +
Sbjct: 116 IELRVLVHSSHAGAVIGRQGSKIKEMKEELGVQMKVFAQCPPQSTERVVSIKGAPDKIIA 175
Query: 78 VIEEVLPALDEI 89
+ ++ L EI
Sbjct: 176 CVNHIMNMLKEI 187
Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPGPERILTI 68
GP + ++ IP+ + G++IGKGG I R+R + A + V P ERI+TI
Sbjct: 259 GPEE-STQVTIPNELGGTIIGKGGERINRVREESGAQIVVGPQQESGERIITI 310
>gi|226472226|emb|CAX77149.1| Heterogeneous nuclear ribonucleoprotein K [Schistosoma japonicum]
Length = 452
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 81/148 (54%), Gaps = 8/148 (5%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTI 68
+ F+R +V +R LIP R AG +IGKGG NI ++R+ + + +PD GPERI+TI
Sbjct: 15 TKFQRSSVDLTNVSIRFLIPGRAAGIMIGKGGENIKKIRSQYNVKLNIPDSRGPERIMTI 74
Query: 69 FAELENGLKVIEEVLPALDEIRQ------KYGKGRGGEDGGDGYN--GGGVGGLGKDDYD 120
+L+ ++ +V P L +I K G G N ++ D
Sbjct: 75 EGDLQAICSIMRDVCPKLKDIMNAKLSDPKRIMGTQGARRRPRRNEDPERDDDEDENMID 134
Query: 121 IRLIVHQSQAGCIIGKGGTKIKELRDTF 148
R++VH+SQAG +IG+GG +IK+LRD +
Sbjct: 135 FRILVHESQAGSVIGRGGERIKDLRDKY 162
Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASV-TVPDCPGP---ERILTIFAELEN 74
N ++ R+L+ AGSVIG+GG I LR+ +K V V P +R++ + A+ +N
Sbjct: 131 NMIDFRILVHESQAGSVIGRGGERIKDLRDKYKMRVIKVYQMLAPLSTDRVVQMVADPDN 190
Query: 75 GLKVIEEVLPALDE 88
++ + V+ A++
Sbjct: 191 VVQCLRAVIEAVES 204
>gi|312085525|ref|XP_003144713.1| hypothetical protein LOAG_09137 [Loa loa]
Length = 327
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 75/125 (60%), Gaps = 22/125 (17%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEE 81
ELRLL+ SR AG++IGK G ++ ++ + A+V+VPD PER++ + A +EN ++ +E
Sbjct: 41 ELRLLVTSRGAGAIIGKKGESVKNIQAECDATVSVPDSQTPERVVQLVATVENVVRCVEM 100
Query: 82 VLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKI 141
++ +DE+ + D +++++VHQS AG +IG+GG++I
Sbjct: 101 IIARIDEVHDNQDR----------------------DSELKVLVHQSHAGAVIGRGGSRI 138
Query: 142 KELRD 146
KELR+
Sbjct: 139 KELRE 143
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLR--NDFKASVTVPDCP-GPERILTIFAELENGL 76
D EL++L+ AG+VIG+GGS I LR N V CP ERI+ I + E +
Sbjct: 115 DSELKVLVHQSHAGAVIGRGGSRIKELREENGVDLKVYSECCPQSTERIIQINGKPEKIV 174
Query: 77 KVIEEVLPALDEI 89
+ ++ L EI
Sbjct: 175 ACLVTIISTLKEI 187
>gi|358255903|dbj|GAA57520.1| heterogeneous nuclear ribonucleoprotein K, partial [Clonorchis
sinensis]
Length = 1085
Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 48/115 (41%), Positives = 65/115 (56%), Gaps = 25/115 (21%)
Query: 32 AGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEIRQ 91
AG +IGKGG NI R+R ++ V +PD GPER+L + +L + L++ E L + R
Sbjct: 2 AGVIIGKGGENIQRIREEYSVKVMIPDSNGPERVLVLDGDLGSVLEIFVENLERMQNNRD 61
Query: 92 KYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRD 146
+ GV D+RL+VHQSQAGCIIG+GG KIKELR+
Sbjct: 62 E-----------------GV--------DLRLLVHQSQAGCIIGRGGYKIKELRE 91
Score = 43.1 bits (100), Expect = 0.038, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 11/121 (9%)
Query: 1 MEFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDF---KASVTVP 57
+E F++ L + R V+LRLL+ AG +IG+GG I LR V
Sbjct: 46 LEIFVENLERMQNNRD--EGVDLRLLVHQSQAGCIIGRGGYKIKELREQSGLQTLKVYQM 103
Query: 58 DCPGP-ERILTIFAELENGLKVIEEVLPALDEI-----RQKYGKGRGGEDGGDGYNGGGV 111
CPG +R++ + +L+ + ++ + L+ RQ Y E Y G GV
Sbjct: 104 LCPGSTDRVIQLVGDLDKVVDCLQAIAELLEGAPPKGSRQNYDARDADESIAADYGGWGV 163
Query: 112 G 112
G
Sbjct: 164 G 164
>gi|402593291|gb|EJW87218.1| KH domain-containing protein [Wuchereria bancrofti]
Length = 359
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 79/127 (62%), Gaps = 17/127 (13%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEE 81
ELRLL+ SR AG +IGKGG NI RLR+++ A+VTVPD PERI TI A +EN L ++ E
Sbjct: 40 ELRLLVSSRGAGGIIGKGGENIKRLRSEYDANVTVPDSQTPERIATIVATVENVLSIVTE 99
Query: 82 VLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKI 141
++P LD+ + + R G+ ++R++VH S AG +IG+ G+KI
Sbjct: 100 IIPKLDD---RTLQSREGDSN--------------RPIELRVLVHSSHAGAVIGRQGSKI 142
Query: 142 KELRDTF 148
KE+++
Sbjct: 143 KEMKEEL 149
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCP--GPERILTIFAELENGLK 77
+ELR+L+ S AG+VIG+ GS I ++ + + V CP ER+++I + L
Sbjct: 120 IELRVLVHSSHAGAVIGRQGSKIKEMKEELGVQMKVFAQCPPQSTERVVSIKGAPDKILA 179
Query: 78 VIEEVLPALDEI 89
+ ++ L EI
Sbjct: 180 CVNHIMNMLKEI 191
Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPGPERILTI 68
GP + ++ IP+ + G++IGKGG I R+R + A + V P ERI+TI
Sbjct: 263 GPEE-STQVTIPNELGGTIIGKGGERINRVREESGAQIVVGPQQESGERIITI 314
>gi|148674925|gb|EDL06872.1| mCG121849, isoform CRA_c [Mus musculus]
Length = 195
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 81/141 (57%), Gaps = 14/141 (9%)
Query: 11 FKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+ RIL+I A
Sbjct: 36 FKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVS--------RILSISA 87
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDYDIRLIV 125
++E +++++++P L+E Q + D + N G D ++RL++
Sbjct: 88 DIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG-SDFDCELRLLI 146
Query: 126 HQSQAGCIIGKGGTKIKELRD 146
HQS AG IIG G KIKELR+
Sbjct: 147 HQSLAGGIIGVKGAKIKELRE 167
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV--PDCP 60
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP
Sbjct: 129 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCP 181
>gi|146197849|dbj|BAF57636.1| hnRNP K protein [Dugesia japonica]
Length = 337
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 74/129 (57%), Gaps = 12/129 (9%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ELR LIPS+ AGSVIGK G NI LR F A + + D GPERIL++ A+L+ L+++
Sbjct: 20 IELRFLIPSKAAGSVIGKSGENIRNLRRMFMARINISDNSGPERILSLEADLDTILEILT 79
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
+ L ++ G G D D N D+R++V+QS G +IG+GG +
Sbjct: 80 QCLEKMEGCIPLPRAGSG--DCNDSIN----------HVDLRMLVNQSLVGALIGRGGGR 127
Query: 141 IKELRDTFD 149
I +LR+ D
Sbjct: 128 INDLREKCD 136
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 8/76 (10%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV--PDCPGPERILTIFAELENGLKVI 79
E+RL P +V G++IG GGS I ++R D A +T+ PD ER++TI ++ +
Sbjct: 268 EIRL--PHKVVGAIIGPGGSRIQQVRMDSGAHITISSPDRNPQERVVTISGNTQD----V 321
Query: 80 EEVLPALDEIRQKYGK 95
+ ++E KYG+
Sbjct: 322 KRAFSMINECLGKYGR 337
>gi|313228809|emb|CBY17960.1| unnamed protein product [Oikopleura dioica]
Length = 471
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 67/126 (53%), Gaps = 17/126 (13%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
V R LIPS++AG+VIGKGG+ I LR+DF + VPD GPER+L E N +IE
Sbjct: 134 VGHRFLIPSKMAGAVIGKGGTTIKSLRSDFACQLNVPDAQGPERVLRFVCEDSNVSPLIE 193
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
+V L + + + D D+R++VHQS+AG +IG G
Sbjct: 194 KVGNLLRNDMVERNRAQ-----------------ADSDIDMRMLVHQSKAGAVIGFKGET 236
Query: 141 IKELRD 146
IK LRD
Sbjct: 237 IKGLRD 242
>gi|195154050|ref|XP_002017936.1| GL17034 [Drosophila persimilis]
gi|194113732|gb|EDW35775.1| GL17034 [Drosophila persimilis]
Length = 506
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 74/129 (57%), Gaps = 27/129 (20%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG-PERILTIFAELENGLK 77
N+ +R+LIPS +AG+VIGKGG +I ++R + P+ P+ + I A++E L+
Sbjct: 21 NEDTVRILIPSSIAGAVIGKGGQHIQKMRTQKVEGKSKPNRDSIPKATIQISADIEATLE 80
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKG 137
+I E+L KY + R +D+D+RL++HQS AGC+IGKG
Sbjct: 81 IITEML--------KYFEER------------------DEDFDVRLLIHQSLAGCVIGKG 114
Query: 138 GTKIKELRD 146
G KIKE+RD
Sbjct: 115 GQKIKEIRD 123
>gi|442761169|gb|JAA72743.1| Putative heteroproteinous nuclear ribonucleoprotein k, partial
[Ixodes ricinus]
Length = 184
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 59/82 (71%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 84 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 143
Query: 65 ILTIFAELENGLKVIEEVLPAL 86
IL+I A++E +++++++P L
Sbjct: 144 ILSISADIETIGEILKKIIPTL 165
>gi|391325297|ref|XP_003737175.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Metaseiulus occidentalis]
Length = 323
Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 72/130 (55%), Gaps = 21/130 (16%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG-PERILTIFAELENGLKVIE 80
+LR LIPS+ AG++IGK G I LR+ F + VPDC G PER++ + +V +
Sbjct: 36 DLRFLIPSQRAGAIIGKSGKQIVELRSTFNCKLVVPDCEGVPERLMLV--------RVNK 87
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
++LP L I K ED +G N +++L++HQ +A +IGKGG +
Sbjct: 88 DLLPQL--ISSVVQKITANEDATNGKNRA----------EMKLLLHQKEAVALIGKGGAR 135
Query: 141 IKELRDTFDA 150
IK++R+ A
Sbjct: 136 IKDIREKTQA 145
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-G 61
+Q+++ + G N E++LL+ + A ++IGKGG+ I +R +A++ + D CP
Sbjct: 98 VQKITANEDATNGKNRAEMKLLLHQKEAVALIGKGGARIKDIREKTQAAIKIFDKTCPLS 157
Query: 62 PERILTIFAELENGLKVIEEVLPALD----EIRQKYGKGRGGEDGGDGYNGGGV 111
++++ I + + I V AL+ +I Y + Y GG+
Sbjct: 158 SDKVVRITGSADVVTEAIRTVCEALENEDVQISDHYTYDPANYEPYTAYEWGGM 211
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 119 YDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
+D+R ++ +AG IIGK G +I ELR TF+
Sbjct: 35 WDLRFLIPSQRAGAIIGKSGKQIVELRSTFNC 66
>gi|194376532|dbj|BAG57412.1| unnamed protein product [Homo sapiens]
Length = 459
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 81/147 (55%), Gaps = 11/147 (7%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ V D
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYYLVFVVFDS----- 81
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGDGYNGGGVGGLGKDDY 119
IL+I A++E +++++++P L+E Q + D + N G D
Sbjct: 82 ILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG-SDFDC 140
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++RL++HQS AG IIG G KIKELR+
Sbjct: 141 ELRLLIHQSLAGGIIGVKGAKIKELRE 167
Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP +R++
Sbjct: 129 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVV 188
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + +V+E + LD I + KGR
Sbjct: 189 LIGGKPD---RVVECIKIILDLISESPIKGRA 217
Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 379 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 432
>gi|313239007|emb|CBY13992.1| unnamed protein product [Oikopleura dioica]
Length = 386
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 75/131 (57%), Gaps = 15/131 (11%)
Query: 18 PND-VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGL 76
P+D + R LIPS+VAG++IG+GG+ I LR +++A + +P+ PER+L I N
Sbjct: 92 PSDKIWCRFLIPSKVAGAIIGRGGATIRALREEYQAIINIPEARAPERVLKICV---NSR 148
Query: 77 KVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGK 136
+ + ++ + EI + E+ +NG G + ++R++V SQAG IIG
Sbjct: 149 ETLHTIVSQIAEILK-------NENAKGSHNGRRKEG----ETELRILVQSSQAGAIIGT 197
Query: 137 GGTKIKELRDT 147
G+ +K LR+T
Sbjct: 198 KGSTVKNLRET 208
Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-PD-CP-GPERILTIFAELENGL 76
+ ELR+L+ S AG++IG GS + LR + + + P+ CP ER+ I +
Sbjct: 179 ETELRILVQSSQAGAIIGTKGSTVKNLRETTGSRININPECCPNSSERVAAIMGPPATVV 238
Query: 77 KVIEEVLPALDEIRQKYGKGRGGEDGGDG-YNGGGVG 112
K I + L+ + K + R + D Y+ GG G
Sbjct: 239 KCISMIYDILERVPAKGNEQRYDPNMFDPTYDYGGYG 275
>gi|357121091|ref|XP_003562255.1| PREDICTED: poly(rC)-binding protein 1-like [Brachypodium
distachyon]
Length = 518
Score = 75.5 bits (184), Expect = 6e-12, Method: Composition-based stats.
Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 10/148 (6%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--P 62
+Q +N KR+ G P D R+L+P G++IG+ G I R+ + KA + + D P P
Sbjct: 98 LQVEANDKRWPGWPGDSVFRILVPVHKVGAIIGRKGEFIKRMCEESKARIKILDGPPGVP 157
Query: 63 ERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIR 122
ER + I A+ E E++ PA+D + + + + G DG G G G +G R
Sbjct: 158 ERAVMISAKDEPD----EQISPAMDGLLRIHKRIADGSDGEFGQTQRGTGTMGP----TR 209
Query: 123 LIVHQSQAGCIIGKGGTKIKELRDTFDA 150
L+V SQAG +IGK G IK ++D+ A
Sbjct: 210 LLVPASQAGSLIGKQGATIKSIQDSSKA 237
>gi|432099107|gb|ELK28510.1| Heterogeneous nuclear ribonucleoprotein K [Myotis davidii]
Length = 152
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 57/84 (67%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ SV+VPD GPE
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLRSKNAGAVIGKGGKNIKALRIDYNVSVSVPDSSGPEC 86
Query: 65 ILTIFAELENGLKVIEEVLPALDE 88
+L+I A+ E +++++ PAL+E
Sbjct: 87 VLSISADTETIGDILKKITPALEE 110
>gi|170586586|ref|XP_001898060.1| KH domain containing protein [Brugia malayi]
gi|158594455|gb|EDP33039.1| KH domain containing protein [Brugia malayi]
Length = 451
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 74/142 (52%), Gaps = 20/142 (14%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRND-----FKASVTVPDCPGPER 64
N KR R LI RV SV G + +++ D F A++TVPD PER
Sbjct: 120 NIKRLRSEEAGFLSNRLILRRV--SVFAAGFNLLSKCVFDHNLCRFDANLTVPDSQTPER 177
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLI 124
+LT+ A EN + E++P LDE R ED D + + D +++++
Sbjct: 178 VLTLTATTENIANCLREIIPRLDENR---------EDDHDRR----MKKADRSDSEMKVL 224
Query: 125 VHQSQAGCIIGKGGTKIKELRD 146
VH+S AG +IG+GG++IKELR+
Sbjct: 225 VHESHAGAVIGRGGSRIKELRE 246
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFAELENG 75
+D E+++L+ AG+VIG+GGS I LR A + V P ERI+ + E+E
Sbjct: 217 SDSEMKVLVHESHAGAVIGRGGSRIKELREKTGAQLKVFSRCAPQSTERIVLLNGEVEKI 276
Query: 76 LKVIEEVLPALDEI 89
+ I ++ L EI
Sbjct: 277 IDCINIIIDVLKEI 290
>gi|26389256|dbj|BAC25705.1| unnamed protein product [Mus musculus]
Length = 97
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPER 86
Query: 65 -ILTIFAEL 72
+ T++A L
Sbjct: 87 YVPTVYASL 95
>gi|56759094|gb|AAW27687.1| SJCHGC08957 protein [Schistosoma japonicum]
Length = 412
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 67/122 (54%), Gaps = 8/122 (6%)
Query: 35 VIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEI----- 89
+IGKGG NI ++R+ + + +PD GPERI+TI +L+ ++ +V P L +I
Sbjct: 1 MIGKGGENIKKIRSQYNVKLNIPDSRGPERIMTIEGDLQAICSIMRDVCPKLKDIMNAKL 60
Query: 90 ---RQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRD 146
++ G + ++ D R++VH+SQAG +IG+GG +IK+LRD
Sbjct: 61 SDPKRIMGTQGARRRPRRNEDPERDDDEDENMIDFRILVHESQAGSVIGRGGERIKDLRD 120
Query: 147 TF 148
+
Sbjct: 121 KY 122
Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASV-TVPDCPGP---ERILTIFAELEN 74
N ++ R+L+ AGSVIG+GG I LR+ +K V V P +R++ + A+ +N
Sbjct: 91 NMIDFRILVHESQAGSVIGRGGERIKDLRDKYKMRVIKVYQMLAPLSTDRVVQMVADPDN 150
Query: 75 GLKVIEEVLPALDE 88
++ + V+ A++
Sbjct: 151 VVQCLRAVIEAVES 164
>gi|443687982|gb|ELT90806.1| hypothetical protein CAPTEDRAFT_1308 [Capitella teleta]
Length = 333
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 15/126 (11%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
V LR+++ + AGS+IGK G N+ + R D A + + D PERI+T+ + K
Sbjct: 2 VTLRMIMQGKEAGSIIGKKGDNVKKFREDSGAKINISDSSCPERIVTVTGTTDQIFKAFT 61
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
+ +E D N L K +RLIV SQ G +IGKGG K
Sbjct: 62 MICKKFEE---------------DIVNTHNSTTLPKPPVTLRLIVPASQCGSLIGKGGAK 106
Query: 141 IKELRD 146
IKE+R+
Sbjct: 107 IKEIRE 112
Score = 35.4 bits (80), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
V LRL++P+ GS+IGKGG+ I +R AS+ V
Sbjct: 85 VTLRLIVPASQCGSLIGKGGAKIKEIRELTGASIQV 120
>gi|328709627|ref|XP_003244018.1| PREDICTED: poly(rC)-binding protein 3-like isoform 2 [Acyrthosiphon
pisum]
Length = 525
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 46/129 (35%), Positives = 64/129 (49%), Gaps = 14/129 (10%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
LRL++ + GS+IGK G + R R + A + + D PERI+TI E K +
Sbjct: 15 LRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSCPERIVTISGSTEAIYKAFSLI 74
Query: 83 LPALDE-IRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKI 141
++E I + GK G +GK +RLIV SQ G +IGKGG KI
Sbjct: 75 CTKVEEFIEMQNGKT-------------GATAIGKCGMTLRLIVPASQCGSLIGKGGNKI 121
Query: 142 KELRDTFDA 150
KE+R+ A
Sbjct: 122 KEIREATGA 130
>gi|108709930|gb|ABF97725.1| KH domain containing protein, expressed [Oryza sativa Japonica
Group]
Length = 389
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 73/138 (52%), Gaps = 10/138 (7%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--PERILTIF 69
K++ G P + R+LIP++ G++IG+ G I ++ + KA + + D P PER + I
Sbjct: 99 KKWPGWPGESVFRILIPAQKVGAIIGRKGEFIKKMCEESKARIKILDGPPGVPERTVMIS 158
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
A+ E + PA+D + + Y + G DG G + +G RL+V SQ
Sbjct: 159 AKDEPDAP----ISPAMDGLFRVYKRITDGSDGDSGQPERNISNVGP----TRLLVPASQ 210
Query: 130 AGCIIGKGGTKIKELRDT 147
AG +IGK G IK ++D+
Sbjct: 211 AGSLIGKQGATIKSIQDS 228
>gi|449274935|gb|EMC83962.1| Poly(rC)-binding protein 4 [Columba livia]
Length = 324
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 21/141 (14%)
Query: 16 GGPNDVEL------RLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIF 69
G P D EL R+L+ + GS+IGK G + R+R A +T+ + PERI TI
Sbjct: 12 GSPEDTELSITLTLRMLMHGKEIGSIIGKKGETVKRIREQSSARITISEGSCPERITTIT 71
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
+ + + + L+ ED G G +G V G+ +RL++ SQ
Sbjct: 72 GSTDAVFRAVSMIAFKLE------------EDLGAGSDGAAV---GRSPVTLRLVIPASQ 116
Query: 130 AGCIIGKGGTKIKELRDTFDA 150
G +IGK G KI+E+R++ A
Sbjct: 117 CGSLIGKAGAKIREIRESTGA 137
>gi|328709625|ref|XP_001951678.2| PREDICTED: poly(rC)-binding protein 3-like isoform 1 [Acyrthosiphon
pisum]
Length = 411
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 65/132 (49%), Gaps = 14/132 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LRL++ + GS+IGK G + R R + A + + D PERI+TI E K
Sbjct: 12 SLTLRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSCPERIVTISGSTEAIYKAF 71
Query: 80 EEVLPALDE-IRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
+ ++E I + GK G +GK +RLIV SQ G +IGKGG
Sbjct: 72 SLICTKVEEFIEMQNGKT-------------GATAIGKCGMTLRLIVPASQCGSLIGKGG 118
Query: 139 TKIKELRDTFDA 150
KIKE+R+ A
Sbjct: 119 NKIKEIREATGA 130
>gi|380024759|ref|XP_003696159.1| PREDICTED: poly(rC)-binding protein 3-like [Apis florea]
Length = 560
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 12/128 (9%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
+RL++ + GS+IGK G + R R + A + + D PERI+T+ + K +
Sbjct: 20 IRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSCPERIVTVTGPTNSIFKAFTLI 79
Query: 83 LPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
+E ++ ++ G GG+ + +RLIV SQ G +IGKGG+KIK
Sbjct: 80 CKKFEEWCSQF------------HDIQGSGGVPRPPITLRLIVPASQCGSLIGKGGSKIK 127
Query: 143 ELRDTFDA 150
E+R+ A
Sbjct: 128 EIREVTGA 135
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTI 68
+ LRL++P+ GS+IGKGGS I +R AS+ V P ER +TI
Sbjct: 104 ITLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQVASDMLPNSTERAVTI 154
Score = 35.8 bits (81), Expect = 6.0, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC 59
SN R + N+ + +P+ + G +IGKGG+ IA +R A + + +C
Sbjct: 354 SNTNRQQPAANNQTHEMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNC 404
>gi|383862495|ref|XP_003706719.1| PREDICTED: poly(rC)-binding protein 4-like isoform 2 [Megachile
rotundata]
Length = 560
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 12/128 (9%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
+RL++ + GS+IGK G + R R + A + + D PERI+T+ + K +
Sbjct: 20 IRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSCPERIVTVTGPTNSIFKAFTLI 79
Query: 83 LPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
+E ++ + G GG+ + +RLIV SQ G +IGKGG+KIK
Sbjct: 80 CKKFEEWCSQFHDIQSG------------GGVPRPPITLRLIVPASQCGSLIGKGGSKIK 127
Query: 143 ELRDTFDA 150
E+R+ A
Sbjct: 128 EIREVTGA 135
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTI 68
+ LRL++P+ GS+IGKGGS I +R AS+ V P ER +TI
Sbjct: 104 ITLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQVASEMLPNSTERAVTI 154
Score = 35.8 bits (81), Expect = 5.4, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC 59
SN R + N+ + +P+ + G +IGKGG+ IA +R A + + +C
Sbjct: 354 SNTNRQQPAANNQTHEMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNC 404
>gi|327265639|ref|XP_003217615.1| PREDICTED: poly(rC)-binding protein 4-like [Anolis carolinensis]
Length = 422
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 14/131 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LR+L+ + GS+IGK G + R+R A +T+ + PERI TI + + +
Sbjct: 27 TLTLRMLMHGKEVGSIIGKKGETVKRIREQSTARITISEGSCPERITTITGSTDAVFRAV 86
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ L+ ED G G GG + K +RL++ SQ G +IGK G
Sbjct: 87 SMIAFKLE------------EDLGTGAINGGT--VSKPPVTLRLVIPASQCGSLIGKAGA 132
Query: 140 KIKELRDTFDA 150
KIKE+R+T A
Sbjct: 133 KIKEIRETTGA 143
>gi|170578788|ref|XP_001894545.1| KH domain containing protein [Brugia malayi]
gi|158598797|gb|EDP36609.1| KH domain containing protein [Brugia malayi]
Length = 377
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 77/159 (48%), Gaps = 49/159 (30%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRND-------------------------------- 49
ELRLL+ SR AG +IGKGG NI RLR++
Sbjct: 40 ELRLLVSSRGAGGIIGKGGENIKRLRSEPLLPVTILISNPDARSPSSSPATPCCCWMVQY 99
Query: 50 FKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGG 109
+ A+VTVPD PERI TI A +EN L ++ E++P LD+ R + N
Sbjct: 100 YDANVTVPDSQTPERIATIVATVENVLAIVTEIIPKLDD--------RTLQSRESDLN-- 149
Query: 110 GVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTF 148
++R++VH S AG +IG+ G+KIKE+++
Sbjct: 150 -------RPIELRVLVHSSHAGAVIGRQGSKIKEMKEEL 181
Score = 38.5 bits (88), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCP--GPERILTIFAELENGLK 77
+ELR+L+ S AG+VIG+ GS I ++ + + V CP ER+++I + L
Sbjct: 152 IELRVLVHSSHAGAVIGRQGSKIKEMKEELGVQMKVFAQCPPQSTERVVSIKGAPDKILA 211
Query: 78 VIEEVLPALDEI 89
+ ++ L EI
Sbjct: 212 CVNHIMNMLKEI 223
>gi|326668110|ref|XP_003198740.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K [Danio
rerio]
Length = 98
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 40/56 (71%)
Query: 11 FKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERIL 66
FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPER +
Sbjct: 34 FKRSRNTDEMVELRVLLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERYV 89
>gi|242021846|ref|XP_002431354.1| polyrC binding protein, putative [Pediculus humanus corporis]
gi|212516622|gb|EEB18616.1| polyrC binding protein, putative [Pediculus humanus corporis]
Length = 234
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 70/134 (52%), Gaps = 14/134 (10%)
Query: 18 PN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGL 76
PN + +RL++ + GS+IGK G + R R + A + + D PERI+T+
Sbjct: 11 PNITLTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSCPERIVTVTGPTNAIF 70
Query: 77 KVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGK 136
K A I +K+ E+ + +GGG G+ K +RLIV SQ G +IGK
Sbjct: 71 K-------AFSLICKKF------EEFQELQSGGGSMGIPKPPITLRLIVPASQCGSLIGK 117
Query: 137 GGTKIKELRDTFDA 150
GG+KIKE+R+ A
Sbjct: 118 GGSKIKEIREVTGA 131
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFAELENGLK 77
+ LRL++P+ GS+IGKGGS I +R AS+ V P ER +TI E +
Sbjct: 100 ITLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQVASEMLPNSTERAVTISGTSEAITQ 159
Query: 78 VIEEVLPALDE 88
I + + E
Sbjct: 160 CIYHICCVMLE 170
>gi|195377361|ref|XP_002047459.1| GJ11921 [Drosophila virilis]
gi|194154617|gb|EDW69801.1| GJ11921 [Drosophila virilis]
Length = 589
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 44/125 (35%), Positives = 64/125 (51%), Gaps = 15/125 (12%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
+RL++ + GS+IGK G + R R + A + + D PERI+T+ +
Sbjct: 26 IRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSCPERIVTVSG-------TTNAI 78
Query: 83 LPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
A I +K+ E+ +N VG +GK IRLIV SQ G +IGK G+KIK
Sbjct: 79 FSAFTLITKKF------EEWCSQFND--VGKVGKTQIPIRLIVPASQCGSLIGKSGSKIK 130
Query: 143 ELRDT 147
E+R T
Sbjct: 131 EIRQT 135
Score = 35.4 bits (80), Expect = 8.2, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFAELE 73
G + +RL++P+ GS+IGK GS I +R S+ V P ER +T+ E
Sbjct: 103 GKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVASEMLPNSTERAVTLSGSAE 162
Query: 74 NGLKVIEEV 82
+ I ++
Sbjct: 163 QITQCIYQI 171
>gi|297601352|ref|NP_001050707.2| Os03g0627500 [Oryza sativa Japonica Group]
gi|255674723|dbj|BAF12621.2| Os03g0627500, partial [Oryza sativa Japonica Group]
Length = 512
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 45/138 (32%), Positives = 73/138 (52%), Gaps = 10/138 (7%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--PERILTIF 69
K++ G P + R+LIP++ G++IG+ G I ++ + KA + + D P PER + I
Sbjct: 101 KKWPGWPGESVFRILIPAQKVGAIIGRKGEFIKKMCEESKARIKILDGPPGVPERTVMIS 160
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
A+ E + PA+D + + Y + G DG G + +G RL+V SQ
Sbjct: 161 AKDEPD----APISPAMDGLFRVYKRITDGSDGDSGQPERNISNVGP----TRLLVPASQ 212
Query: 130 AGCIIGKGGTKIKELRDT 147
AG +IGK G IK ++D+
Sbjct: 213 AGSLIGKQGATIKSIQDS 230
>gi|218193355|gb|EEC75782.1| hypothetical protein OsI_12699 [Oryza sativa Indica Group]
Length = 510
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 45/138 (32%), Positives = 73/138 (52%), Gaps = 10/138 (7%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--PERILTIF 69
K++ G P + R+LIP++ G++IG+ G I ++ + KA + + D P PER + I
Sbjct: 99 KKWPGWPGESVFRILIPAQKVGAIIGRKGEFIKKMCEESKARIKILDGPPGVPERTVMIS 158
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
A+ E + PA+D + + Y + G DG G + +G RL+V SQ
Sbjct: 159 AKDEPD----APISPAMDGLFRVYKRITDGSDGDSGQPERNISNVGP----TRLLVPASQ 210
Query: 130 AGCIIGKGGTKIKELRDT 147
AG +IGK G IK ++D+
Sbjct: 211 AGSLIGKQGATIKSIQDS 228
>gi|16924113|gb|AAL31692.1|AC092390_13 putative RNA binding protein [Oryza sativa Japonica Group]
gi|108709929|gb|ABF97724.1| KH domain containing protein, expressed [Oryza sativa Japonica
Group]
gi|215695360|dbj|BAG90551.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222625405|gb|EEE59537.1| hypothetical protein OsJ_11804 [Oryza sativa Japonica Group]
Length = 510
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 45/138 (32%), Positives = 73/138 (52%), Gaps = 10/138 (7%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--PERILTIF 69
K++ G P + R+LIP++ G++IG+ G I ++ + KA + + D P PER + I
Sbjct: 99 KKWPGWPGESVFRILIPAQKVGAIIGRKGEFIKKMCEESKARIKILDGPPGVPERTVMIS 158
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
A+ E + PA+D + + Y + G DG G + +G RL+V SQ
Sbjct: 159 AKDEPD----APISPAMDGLFRVYKRITDGSDGDSGQPERNISNVGP----TRLLVPASQ 210
Query: 130 AGCIIGKGGTKIKELRDT 147
AG +IGK G IK ++D+
Sbjct: 211 AGSLIGKQGATIKSIQDS 228
>gi|357112139|ref|XP_003557867.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 542
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 74/139 (53%), Gaps = 14/139 (10%)
Query: 14 FRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASV----TVPDCPGPERILTIF 69
+ GP+D R L SR GS+IG+GG +LR D +A + +VP C ER++TIF
Sbjct: 33 YAPGPDDTVYRYLCTSRKIGSIIGRGGEIAKQLRTDTQAKIRIGESVPGC--DERVITIF 90
Query: 70 AELE--NGLKVIEE-VLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVH 126
+ N ++ E+ V PA D + + + K + GD N G+ + +RL+V
Sbjct: 91 SSSRETNTIEDTEDKVCPAQDALFRVHEKLIADDGPGDEENEEGLAQV-----TVRLLVP 145
Query: 127 QSQAGCIIGKGGTKIKELR 145
Q GCIIGKGG I+ +R
Sbjct: 146 SDQIGCIIGKGGHIIQGIR 164
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 115 GKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
G+ Y RL+V SQ GC+IGKGG+ I E+R T A
Sbjct: 361 GEPSYTTRLLVSTSQIGCLIGKGGSIITEIRRTSRA 396
>gi|427796273|gb|JAA63588.1| Putative polyc-binding alphacp-1, partial [Rhipicephalus
pulchellus]
Length = 510
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 51/142 (35%), Positives = 72/142 (50%), Gaps = 15/142 (10%)
Query: 17 GPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENG 75
GP+ + +RL++ + GS+IGK G NI + R + A + + D PERI+T+ E
Sbjct: 69 GPSVTLTVRLIMQGKEVGSIIGKKGDNIKKFREESGAKINISDGSCPERIVTVTGSTEAI 128
Query: 76 LKV-------IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQS 128
LK EE+L L Q G E +G + L K +RLIV S
Sbjct: 129 LKAFSLIARKFEEMLSLLCLPVQTVGPTL-QELQSNGSH------LPKPPVTLRLIVPAS 181
Query: 129 QAGCIIGKGGTKIKELRDTFDA 150
Q G +IGKGG+KIKE+R+ A
Sbjct: 182 QCGSLIGKGGSKIKEIREVTGA 203
Score = 39.7 bits (91), Expect = 0.36, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFAELENGLK 77
V LRL++P+ GS+IGKGGS I +R AS+ V P ER +T+ E K
Sbjct: 172 VTLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQVASEMLPNSTERAVTVSGTAEAITK 231
Query: 78 VIEEV 82
I ++
Sbjct: 232 CIYQI 236
>gi|119585581|gb|EAW65177.1| poly(rC) binding protein 4, isoform CRA_f [Homo sapiens]
Length = 244
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LR+L+ + GS+IGK G + R+R A +T+ + PERI TI +
Sbjct: 17 TLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAV 76
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ LDE + NGG V + +RL++ SQ G +IGK GT
Sbjct: 77 SMIAFKLDE-----------DLCAAPANGGNV---SRPPVTLRLVIPASQCGSLIGKAGT 122
Query: 140 KIKELRDTFDA 150
KIKE+R+T A
Sbjct: 123 KIKEIRETTGA 133
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL+IP+ GS+IGK G+ I +R A V V P+ ER +T+ +
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPN--STERAVTVSGVPDAI 159
Query: 76 LKVIEEVLPALDEIRQKYGKGRGG 99
+ + ++ + E+ +G+ RGG
Sbjct: 160 ILCVRQICAVILEV-LPWGRERGG 182
>gi|391348567|ref|XP_003748518.1| PREDICTED: poly(rC)-binding protein 3-like [Metaseiulus
occidentalis]
Length = 418
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 63/127 (49%), Gaps = 6/127 (4%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +R+++ + GS+IGK G NI + R D A + + D PERI+T+ E LK
Sbjct: 12 LTVRMIMQGKEVGSIIGKKGDNIKKFREDSGAKINISDGTCPERIVTVTGSTECILKAFS 71
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGV-GGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ +E+ G NG V G +RLIV SQ G +IGK G+
Sbjct: 72 LICAKFEEM-----SSLSGSPTESALNGQKVLPGQTPPPVTLRLIVPASQCGSLIGKAGS 126
Query: 140 KIKELRD 146
KI+E+R+
Sbjct: 127 KIREIRE 133
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 18 PNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFAELEN 74
P V LRL++P+ GS+IGK GS I +R ASV V P ER +T+ +
Sbjct: 103 PPPVTLRLIVPASQCGSLIGKAGSKIREIREITGASVQVASEMLPNSTERTVTVAGTADA 162
Query: 75 GLKVIEEVLPALDEIRQK 92
K I ++ + E K
Sbjct: 163 VTKCIYQICCVMLECPPK 180
>gi|17737727|ref|NP_524208.1| mushroom-body expressed, isoform A [Drosophila melanogaster]
gi|1770212|emb|CAA67719.1| nucleic acid binding protein [Drosophila melanogaster]
gi|7296507|gb|AAF51792.1| mushroom-body expressed, isoform A [Drosophila melanogaster]
Length = 386
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 65/127 (51%), Gaps = 15/127 (11%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RL++ + GS+IGK G + R R + A + + D PERI+T+
Sbjct: 24 LTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSCPERIVTVSG-------TTN 76
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
+ A I +K+ E+ +N VG +GK IRLIV SQ G +IGK G+K
Sbjct: 77 AIFSAFTLITKKF------EEWCSQFND--VGKVGKTQIPIRLIVPASQCGSLIGKSGSK 128
Query: 141 IKELRDT 147
IKE+R T
Sbjct: 129 IKEIRQT 135
Score = 35.4 bits (80), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFAELE 73
G + +RL++P+ GS+IGK GS I +R S+ V P ER +T+ E
Sbjct: 103 GKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVASEMLPNSTERAVTLSGSAE 162
Query: 74 NGLKVIEEVLPALDE 88
+ I ++ + E
Sbjct: 163 QITQCIYQICLVMLE 177
>gi|149728835|ref|XP_001494599.1| PREDICTED: poly(rC)-binding protein 4-like isoform 1 [Equus
caballus]
Length = 403
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LR+L+ + GS+IGK G + R+R A +T+ + PERI TI +
Sbjct: 17 TLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAV 76
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ LDE + NGG V + +RL++ SQ G +IGK GT
Sbjct: 77 SMIAFKLDE-----------DLCAAPTNGGSV---SRPPVTLRLVIPASQCGSLIGKAGT 122
Query: 140 KIKELRDTFDA 150
KIKE+R+T A
Sbjct: 123 KIKEIRETTGA 133
>gi|12230430|sp|P57724.1|PCBP4_MOUSE RecName: Full=Poly(rC)-binding protein 4; AltName: Full=Alpha-CP4
gi|9957163|gb|AAG09239.1|AF176328_1 alphaCP-4 [Mus musculus]
Length = 403
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LR+L+ + GS+IGK G + R+R A +T+ + PERI TI +
Sbjct: 17 TLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAV 76
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ LDE + NGG V + +RL++ SQ G +IGK GT
Sbjct: 77 SMIAFKLDE-----------DLCAAPANGGSV---SRPPVTLRLVIPASQCGSLIGKAGT 122
Query: 140 KIKELRDTFDA 150
KIKE+R+T A
Sbjct: 123 KIKEIRETTGA 133
>gi|195440454|ref|XP_002068057.1| GK10610 [Drosophila willistoni]
gi|194164142|gb|EDW79043.1| GK10610 [Drosophila willistoni]
Length = 363
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 65/128 (50%), Gaps = 15/128 (11%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ +RL++ + GS+IGK G + R R + A + + D PERI+T+
Sbjct: 23 TLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSCPERIVTVSG-------TT 75
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ A I +K+ E+ +N VG +GK IRLIV SQ G +IGK G+
Sbjct: 76 SAIFSAFTLITKKF------EEWCSQFND--VGKVGKTQIPIRLIVPASQCGSLIGKSGS 127
Query: 140 KIKELRDT 147
KIKE+R T
Sbjct: 128 KIKEIRQT 135
Score = 35.4 bits (80), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFAELE 73
G + +RL++P+ GS+IGK GS I +R S+ V P ER +T+ E
Sbjct: 103 GKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVASEMLPNSTERAVTLSGSAE 162
Query: 74 NGLKVIEEVLPALDE 88
+ I ++ + E
Sbjct: 163 QITQCIYQICLVMLE 177
>gi|227497228|ref|NP_067542.3| poly(rC)-binding protein 4 [Mus musculus]
gi|14715061|gb|AAH10694.1| Poly(rC) binding protein 4 [Mus musculus]
Length = 403
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LR+L+ + GS+IGK G + R+R A +T+ + PERI TI +
Sbjct: 17 TLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAV 76
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ LDE + NGG V + +RL++ SQ G +IGK GT
Sbjct: 77 SMIAFKLDE-----------DLCAAPANGGSV---SRPPVTLRLVIPASQCGSLIGKAGT 122
Query: 140 KIKELRDTFDA 150
KIKE+R+T A
Sbjct: 123 KIKEIRETTGA 133
>gi|26346528|dbj|BAC36915.1| unnamed protein product [Mus musculus]
Length = 403
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LR+L+ + GS+IGK G + R+R A +T+ + PERI TI +
Sbjct: 17 TLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAV 76
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ LDE + NGG V + +RL++ SQ G +IGK GT
Sbjct: 77 SMIAFKLDE-----------DLCAAPANGGSV---SRPPVTLRLVIPASQCGSLIGKAGT 122
Query: 140 KIKELRDTFDA 150
KIKE+R+T A
Sbjct: 123 KIKEIRETTGA 133
>gi|442634098|ref|NP_001262198.1| mushroom-body expressed, isoform L [Drosophila melanogaster]
gi|440216175|gb|AGB94891.1| mushroom-body expressed, isoform L [Drosophila melanogaster]
Length = 368
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 65/127 (51%), Gaps = 15/127 (11%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RL++ + GS+IGK G + R R + A + + D PERI+T+
Sbjct: 24 LTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSCPERIVTVSG-------TTN 76
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
+ A I +K+ E+ +N VG +GK IRLIV SQ G +IGK G+K
Sbjct: 77 AIFSAFTLITKKF------EEWCSQFND--VGKVGKTQIPIRLIVPASQCGSLIGKSGSK 128
Query: 141 IKELRDT 147
IKE+R T
Sbjct: 129 IKEIRQT 135
Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFAELE 73
G + +RL++P+ GS+IGK GS I +R S+ V P ER +T+ E
Sbjct: 103 GKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVASEMLPNSTERAVTLSGSAE 162
Query: 74 NGLKVIEEVLPALDE 88
+ I ++ + E
Sbjct: 163 QITQCIYQICLVMLE 177
>gi|300798415|ref|NP_001178812.1| poly(rC)-binding protein 4 [Rattus norvegicus]
Length = 403
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LR+L+ + GS+IGK G + R+R A +T+ + PERI TI +
Sbjct: 17 TLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAV 76
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ LDE + NGG V + +RL++ SQ G +IGK GT
Sbjct: 77 SMIAFKLDE-----------DLCAAPANGGSV---SRPPVTLRLVIPASQCGSLIGKAGT 122
Query: 140 KIKELRDTFDA 150
KIKE+R+T A
Sbjct: 123 KIKEIRETTGA 133
>gi|45553235|ref|NP_996145.1| mushroom-body expressed, isoform C [Drosophila melanogaster]
gi|194876029|ref|XP_001973701.1| GG16232 [Drosophila erecta]
gi|195496648|ref|XP_002095782.1| GE22592 [Drosophila yakuba]
gi|16648354|gb|AAL25442.1| LD32520p [Drosophila melanogaster]
gi|45446078|gb|AAS65095.1| mushroom-body expressed, isoform C [Drosophila melanogaster]
gi|190655484|gb|EDV52727.1| GG16232 [Drosophila erecta]
gi|194181883|gb|EDW95494.1| GE22592 [Drosophila yakuba]
gi|220951950|gb|ACL88518.1| mub-PC [synthetic construct]
Length = 364
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 65/128 (50%), Gaps = 15/128 (11%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ +RL++ + GS+IGK G + R R + A + + D PERI+T+
Sbjct: 23 TLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSCPERIVTVSG-------TT 75
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ A I +K+ E+ +N VG +GK IRLIV SQ G +IGK G+
Sbjct: 76 NAIFSAFTLITKKF------EEWCSQFND--VGKVGKTQIPIRLIVPASQCGSLIGKSGS 127
Query: 140 KIKELRDT 147
KIKE+R T
Sbjct: 128 KIKEIRQT 135
Score = 35.4 bits (80), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFAELE 73
G + +RL++P+ GS+IGK GS I +R S+ V P ER +T+ E
Sbjct: 103 GKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVASEMLPNSTERAVTLSGSAE 162
Query: 74 NGLKVIEEVLPALDE 88
+ I ++ + E
Sbjct: 163 QITQCIYQICLVMLE 177
>gi|354476373|ref|XP_003500399.1| PREDICTED: poly(rC)-binding protein 4 [Cricetulus griseus]
gi|344252773|gb|EGW08877.1| Poly(rC)-binding protein 4 [Cricetulus griseus]
Length = 403
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LR+L+ + GS+IGK G + R+R A +T+ + PERI TI +
Sbjct: 17 TLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAV 76
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ LDE + NGG V + +RL++ SQ G +IGK GT
Sbjct: 77 SMIAFKLDE-----------DLCAAPANGGSV---SRPPVTLRLVIPASQCGSLIGKAGT 122
Query: 140 KIKELRDTFDA 150
KIKE+R+T A
Sbjct: 123 KIKEIRETTGA 133
>gi|348581993|ref|XP_003476761.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Cavia porcellus]
Length = 403
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LR+L+ + GS+IGK G + R+R A +T+ + PERI TI +
Sbjct: 17 TLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAV 76
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ LDE + NGG V + +RL++ SQ G +IGK GT
Sbjct: 77 SMIAFKLDE-----------DLCAAPANGGSV---SRPPVTLRLVIPASQCGSLIGKAGT 122
Query: 140 KIKELRDTFDA 150
KIKE+R+T A
Sbjct: 123 KIKEIRETTGA 133
>gi|12837891|dbj|BAB23990.1| unnamed protein product [Mus musculus]
Length = 403
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LR+L+ + GS+IGK G + R+R A +T+ + PERI TI +
Sbjct: 17 TLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAV 76
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ LDE + NGG V + +RL++ SQ G +IGK GT
Sbjct: 77 SMIAFKLDE-----------DLCAAPANGGSV---SRPPVTLRLVIPASQCGSLIGKAGT 122
Query: 140 KIKELRDTFDA 150
KIKE+R+T A
Sbjct: 123 KIKEIRETTGA 133
>gi|195128219|ref|XP_002008562.1| GI13561 [Drosophila mojavensis]
gi|193920171|gb|EDW19038.1| GI13561 [Drosophila mojavensis]
Length = 362
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 65/128 (50%), Gaps = 15/128 (11%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ +RL++ + GS+IGK G + R R + A + + D PERI+T+
Sbjct: 23 TLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSCPERIVTVSG-------TT 75
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ A I +K+ E+ +N VG +GK IRLIV SQ G +IGK G+
Sbjct: 76 NAIFSAFTLITKKF------EEWCSQFND--VGKVGKTQIPIRLIVPASQCGSLIGKSGS 127
Query: 140 KIKELRDT 147
KIKE+R T
Sbjct: 128 KIKEIRQT 135
Score = 35.0 bits (79), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFAELE 73
G + +RL++P+ GS+IGK GS I +R S+ V P ER +T+ E
Sbjct: 103 GKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVASEMLPNSTERAVTLSGSAE 162
Query: 74 NGLKVIEEVLPALDE 88
+ I ++ + E
Sbjct: 163 QITQCIYQICLVMLE 177
>gi|351698877|gb|EHB01796.1| Poly(rC)-binding protein 4 [Heterocephalus glaber]
Length = 443
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LR+L+ + GS+IGK G + R+R A +T+ + PERI TI +
Sbjct: 57 TLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAV 116
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ LDE + NGG V + +RL++ SQ G +IGK GT
Sbjct: 117 SMIAFKLDE-----------DLCAAPANGGSV---SRPPVTLRLVIPASQCGSLIGKAGT 162
Query: 140 KIKELRDTFDA 150
KIKE+R+T A
Sbjct: 163 KIKEIRETTGA 173
>gi|386771595|ref|NP_001246876.1| mushroom-body expressed, isoform H [Drosophila melanogaster]
gi|383292067|gb|AFH04547.1| mushroom-body expressed, isoform H [Drosophila melanogaster]
Length = 433
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 65/127 (51%), Gaps = 15/127 (11%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RL++ + GS+IGK G + R R + A + + D PERI+T+
Sbjct: 24 LTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSCPERIVTVSG-------TTN 76
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
+ A I +K+ E+ +N VG +GK IRLIV SQ G +IGK G+K
Sbjct: 77 AIFSAFTLITKKF------EEWCSQFND--VGKVGKTQIPIRLIVPASQCGSLIGKSGSK 128
Query: 141 IKELRDT 147
IKE+R T
Sbjct: 129 IKEIRQT 135
Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFAELE 73
G + +RL++P+ GS+IGK GS I +R S+ V P ER +T+ E
Sbjct: 103 GKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVASEMLPNSTERAVTLSGSAE 162
Query: 74 NGLKVIEEVLPALDE 88
+ I ++ + E
Sbjct: 163 QITQCIYQICLVMLE 177
>gi|149018652|gb|EDL77293.1| rCG25644, isoform CRA_a [Rattus norvegicus]
gi|149018654|gb|EDL77295.1| rCG25644, isoform CRA_a [Rattus norvegicus]
gi|149018655|gb|EDL77296.1| rCG25644, isoform CRA_a [Rattus norvegicus]
gi|149018656|gb|EDL77297.1| rCG25644, isoform CRA_a [Rattus norvegicus]
gi|149018658|gb|EDL77299.1| rCG25644, isoform CRA_a [Rattus norvegicus]
gi|149018659|gb|EDL77300.1| rCG25644, isoform CRA_a [Rattus norvegicus]
Length = 183
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 62/128 (48%), Gaps = 14/128 (10%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
LR+L+ + GS+IGK G + R+R A +T+ + PERI TI + +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMI 79
Query: 83 LPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LDE + NGG V + +RL++ SQ G +IGK GTKIK
Sbjct: 80 AFKLDE-----------DLCAAPANGGSV---SRPPVTLRLVIPASQCGSLIGKAGTKIK 125
Query: 143 ELRDTFDA 150
E+R+T A
Sbjct: 126 EIRETTGA 133
>gi|426340771|ref|XP_004034301.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Gorilla gorilla
gorilla]
gi|426340773|ref|XP_004034302.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Gorilla gorilla
gorilla]
gi|426340775|ref|XP_004034303.1| PREDICTED: poly(rC)-binding protein 4 isoform 3 [Gorilla gorilla
gorilla]
Length = 403
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LR+L+ + GS+IGK G + R+R A +T+ + PERI TI +
Sbjct: 17 TLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAV 76
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ LDE + NGG V + +RL++ SQ G +IGK GT
Sbjct: 77 SMIAFKLDE-----------DLCAAPANGGNV---SRPPVTLRLVIPASQCGSLIGKAGT 122
Query: 140 KIKELRDTFDA 150
KIKE+R+T A
Sbjct: 123 KIKEIRETTGA 133
>gi|335299138|ref|XP_003358505.1| PREDICTED: poly(rC)-binding protein 4-like isoform 1 [Sus scrofa]
Length = 403
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LR+L+ + GS+IGK G + R+R A +T+ + PERI TI +
Sbjct: 17 TLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAV 76
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ LDE + NGG V + +RL++ SQ G +IGK GT
Sbjct: 77 SMIAFKLDE-----------DLCAAPANGGNV---SRPPVTLRLVIPASQCGSLIGKAGT 122
Query: 140 KIKELRDTFDA 150
KIKE+R+T A
Sbjct: 123 KIKEIRETTGA 133
>gi|148689196|gb|EDL21143.1| poly(rC) binding protein 4, isoform CRA_a [Mus musculus]
gi|148689197|gb|EDL21144.1| poly(rC) binding protein 4, isoform CRA_a [Mus musculus]
gi|148689198|gb|EDL21145.1| poly(rC) binding protein 4, isoform CRA_a [Mus musculus]
Length = 244
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 63/130 (48%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ LR+L+ + GS+IGK G + R+R A +T+ + PERI TI +
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVS 77
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
+ LDE + NGG V + +RL++ SQ G +IGK GTK
Sbjct: 78 MIAFKLDE-----------DLCAAPANGGSV---SRPPVTLRLVIPASQCGSLIGKAGTK 123
Query: 141 IKELRDTFDA 150
IKE+R+T A
Sbjct: 124 IKEIRETTGA 133
>gi|115497150|ref|NP_001068751.1| poly(rC)-binding protein 4 [Bos taurus]
gi|119390858|sp|Q0VCU0.1|PCBP4_BOVIN RecName: Full=Poly(rC)-binding protein 4; AltName: Full=Alpha-CP4
gi|111304931|gb|AAI20010.1| Poly(rC) binding protein 4 [Bos taurus]
gi|296474781|tpg|DAA16896.1| TPA: poly(rC)-binding protein 4 [Bos taurus]
Length = 403
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LR+L+ + GS+IGK G + R+R A +T+ + PERI TI +
Sbjct: 17 TLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAV 76
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ LDE + NGG V + +RL++ SQ G +IGK GT
Sbjct: 77 SMIAFKLDE-----------DLCAAPANGGNV---SRPPVTLRLVIPASQCGSLIGKAGT 122
Query: 140 KIKELRDTFDA 150
KIKE+R+T A
Sbjct: 123 KIKEIRETTGA 133
>gi|410951299|ref|XP_003982335.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Felis catus]
Length = 403
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LR+L+ + GS+IGK G + R+R A +T+ + PERI TI +
Sbjct: 17 TLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAV 76
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ LDE + NGG V + +RL++ SQ G +IGK GT
Sbjct: 77 SMIAFKLDE-----------DLCAAPANGGNV---SRPPVTLRLVIPASQCGSLIGKAGT 122
Query: 140 KIKELRDTFDA 150
KIKE+R+T A
Sbjct: 123 KIKEIRETTGA 133
>gi|397495989|ref|XP_003818826.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Pan paniscus]
gi|397495991|ref|XP_003818827.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Pan paniscus]
Length = 403
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LR+L+ + GS+IGK G + R+R A +T+ + PERI TI +
Sbjct: 17 TLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAV 76
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ LDE + NGG V + +RL++ SQ G +IGK GT
Sbjct: 77 SMIAFKLDE-----------DLCAAPANGGNV---SRPPVTLRLVIPASQCGSLIGKAGT 122
Query: 140 KIKELRDTFDA 150
KIKE+R+T A
Sbjct: 123 KIKEIRETTGA 133
>gi|14670369|ref|NP_127501.1| poly(rC)-binding protein 4 isoform c [Homo sapiens]
gi|14670373|ref|NP_127503.1| poly(rC)-binding protein 4 isoform c [Homo sapiens]
gi|291575148|ref|NP_001167571.1| poly(rC)-binding protein 4 isoform c [Homo sapiens]
gi|114587184|ref|XP_001170982.1| PREDICTED: poly(rC)-binding protein 4 isoform 12 [Pan troglodytes]
gi|114587188|ref|XP_001171026.1| PREDICTED: poly(rC)-binding protein 4 isoform 14 [Pan troglodytes]
gi|410037040|ref|XP_003950173.1| PREDICTED: poly(rC)-binding protein 4 [Pan troglodytes]
gi|12230429|sp|P57723.1|PCBP4_HUMAN RecName: Full=Poly(rC)-binding protein 4; AltName: Full=Alpha-CP4
gi|9957167|gb|AAG09241.1|AF176330_1 alphaCP-4 [Homo sapiens]
gi|10436225|dbj|BAB14761.1| unnamed protein product [Homo sapiens]
gi|12804299|gb|AAH03008.1| Poly(rC) binding protein 4 [Homo sapiens]
gi|13278756|gb|AAH04153.1| Poly(rC) binding protein 4 [Homo sapiens]
gi|119585571|gb|EAW65167.1| poly(rC) binding protein 4, isoform CRA_c [Homo sapiens]
gi|119585572|gb|EAW65168.1| poly(rC) binding protein 4, isoform CRA_c [Homo sapiens]
gi|119585573|gb|EAW65169.1| poly(rC) binding protein 4, isoform CRA_c [Homo sapiens]
gi|119585576|gb|EAW65172.1| poly(rC) binding protein 4, isoform CRA_c [Homo sapiens]
gi|119585577|gb|EAW65173.1| poly(rC) binding protein 4, isoform CRA_c [Homo sapiens]
gi|261861404|dbj|BAI47224.1| poly(rC) binding protein 4 [synthetic construct]
gi|410227440|gb|JAA10939.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410227442|gb|JAA10940.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410227444|gb|JAA10941.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410262892|gb|JAA19412.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410262894|gb|JAA19413.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410262896|gb|JAA19414.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410301312|gb|JAA29256.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410301314|gb|JAA29257.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410350315|gb|JAA41761.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410350319|gb|JAA41763.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410350321|gb|JAA41764.1| poly(rC) binding protein 4 [Pan troglodytes]
Length = 403
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LR+L+ + GS+IGK G + R+R A +T+ + PERI TI +
Sbjct: 17 TLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAV 76
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ LDE + NGG V + +RL++ SQ G +IGK GT
Sbjct: 77 SMIAFKLDE-----------DLCAAPANGGNV---SRPPVTLRLVIPASQCGSLIGKAGT 122
Query: 140 KIKELRDTFDA 150
KIKE+R+T A
Sbjct: 123 KIKEIRETTGA 133
>gi|395832731|ref|XP_003789409.1| PREDICTED: poly(rC)-binding protein 4 [Otolemur garnettii]
Length = 403
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LR+L+ + GS+IGK G + R+R A +T+ + PERI TI +
Sbjct: 17 TLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAV 76
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ LDE + NGG V + +RL++ SQ G +IGK GT
Sbjct: 77 SMIAFKLDE-----------DLCAAPANGGNV---SRPPVTLRLVIPASQCGSLIGKAGT 122
Query: 140 KIKELRDTFDA 150
KIKE+R+T A
Sbjct: 123 KIKEIRETTGA 133
>gi|73985377|ref|XP_849987.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Canis lupus
familiaris]
gi|301767222|ref|XP_002919000.1| PREDICTED: poly(rC)-binding protein 4-like isoform 1 [Ailuropoda
melanoleuca]
Length = 403
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LR+L+ + GS+IGK G + R+R A +T+ + PERI TI +
Sbjct: 17 TLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAV 76
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ LDE + NGG V + +RL++ SQ G +IGK GT
Sbjct: 77 SMIAFKLDE-----------DLCAAPANGGNV---SRPPVTLRLVIPASQCGSLIGKAGT 122
Query: 140 KIKELRDTFDA 150
KIKE+R+T A
Sbjct: 123 KIKEIRETTGA 133
>gi|291393785|ref|XP_002713277.1| PREDICTED: poly(rC) binding protein 4 [Oryctolagus cuniculus]
Length = 403
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LR+L+ + GS+IGK G + R+R A +T+ + PERI TI +
Sbjct: 17 TLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAV 76
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ LDE + NGG V + +RL++ SQ G +IGK GT
Sbjct: 77 SMIAFKLDE-----------DLCAAPANGGNV---SRPPVTLRLVIPASQCGSLIGKAGT 122
Query: 140 KIKELRDTFDA 150
KIKE+R+T A
Sbjct: 123 KIKEIRETTGA 133
>gi|386780909|ref|NP_001247796.1| poly(rC)-binding protein 4 [Macaca mulatta]
gi|332216103|ref|XP_003257183.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|332216105|ref|XP_003257184.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|332216107|ref|XP_003257185.1| PREDICTED: poly(rC)-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|402859923|ref|XP_003894386.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Papio anubis]
gi|402859925|ref|XP_003894387.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Papio anubis]
gi|402859927|ref|XP_003894388.1| PREDICTED: poly(rC)-binding protein 4 isoform 3 [Papio anubis]
gi|403291118|ref|XP_003936646.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
gi|403291120|ref|XP_003936647.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
gi|355559585|gb|EHH16313.1| hypothetical protein EGK_11579 [Macaca mulatta]
gi|355746662|gb|EHH51276.1| hypothetical protein EGM_10621 [Macaca fascicularis]
gi|380788331|gb|AFE66041.1| poly(rC)-binding protein 4 isoform c [Macaca mulatta]
gi|380788333|gb|AFE66042.1| poly(rC)-binding protein 4 isoform c [Macaca mulatta]
gi|383414707|gb|AFH30567.1| poly(rC)-binding protein 4 isoform c [Macaca mulatta]
gi|384943104|gb|AFI35157.1| poly(rC)-binding protein 4 isoform c [Macaca mulatta]
Length = 403
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LR+L+ + GS+IGK G + R+R A +T+ + PERI TI +
Sbjct: 17 TLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAV 76
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ LDE + NGG V + +RL++ SQ G +IGK GT
Sbjct: 77 SMIAFKLDE-----------DLCAAPANGGNV---SRPPVTLRLVIPASQCGSLIGKAGT 122
Query: 140 KIKELRDTFDA 150
KIKE+R+T A
Sbjct: 123 KIKEIRETTGA 133
>gi|158293685|ref|XP_557579.3| AGAP004942-PA [Anopheles gambiae str. PEST]
gi|157016566|gb|EAL40201.3| AGAP004942-PA [Anopheles gambiae str. PEST]
Length = 382
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 14/126 (11%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RL++ + GS+IGK G + R R + A + + DC PERI+T+ K
Sbjct: 22 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDCSCPERIVTVSGSRSAIYKAFT 81
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
+ +E ++ +D + GK IRLIV SQ G +IGKGG+K
Sbjct: 82 LITKKFEEWCSQF------QDNANTQ--------GKPQIPIRLIVPASQCGSLIGKGGSK 127
Query: 141 IKELRD 146
IKE+R+
Sbjct: 128 IKEIRE 133
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG 61
E + Q + +G P + +RL++P+ GS+IGKGGS I +R S+ V
Sbjct: 88 EEWCSQFQDNANTQGKP-QIPIRLIVPASQCGSLIGKGGSKIKEIREITGCSIQVASEML 146
Query: 62 P---ERILTIFAELENGLKVIEEVLPALDE 88
P ER +T+ E + I + + E
Sbjct: 147 PNSTERAVTLSGSAEAITQCIYHICCVMLE 176
>gi|296225349|ref|XP_002758447.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Callithrix
jacchus]
gi|296225353|ref|XP_002758449.1| PREDICTED: poly(rC)-binding protein 4 isoform 3 [Callithrix
jacchus]
gi|297671175|ref|XP_002813714.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Pongo abelii]
gi|297671177|ref|XP_002813715.1| PREDICTED: poly(rC)-binding protein 4 isoform 3 [Pongo abelii]
gi|395733705|ref|XP_003776278.1| PREDICTED: poly(rC)-binding protein 4 [Pongo abelii]
Length = 403
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LR+L+ + GS+IGK G + R+R A +T+ + PERI TI +
Sbjct: 17 TLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAV 76
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ LDE + NGG V + +RL++ SQ G +IGK GT
Sbjct: 77 SMIAFKLDE-----------DLCAAPANGGNV---SRPPVTLRLVIPASQCGSLIGKAGT 122
Query: 140 KIKELRDTFDA 150
KIKE+R+T A
Sbjct: 123 KIKEIRETTGA 133
>gi|417410720|gb|JAA51826.1| Putative polyc-binding alphacp-1, partial [Desmodus rotundus]
Length = 440
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LR+L+ + GS+IGK G + R+R A +T+ + PERI TI +
Sbjct: 54 TLTLRMLMQGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAV 113
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ LDE + NGG V + +RL++ SQ G +IGK GT
Sbjct: 114 SMIAFKLDE-----------DLCSAPANGGTV---SRPPVTLRLVIPASQCGSLIGKAGT 159
Query: 140 KIKELRDTFDA 150
KIKE+R+T A
Sbjct: 160 KIKEIRETTGA 170
>gi|328720738|ref|XP_001949210.2| PREDICTED: poly(rC)-binding protein 3-like [Acyrthosiphon pisum]
Length = 436
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 73/148 (49%), Gaps = 18/148 (12%)
Query: 5 IQQLSNFKRFRGGPNDVEL--RLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP 62
+QQ SN F NDV L R+L R G+VIGKGG + +R+ A V + D P
Sbjct: 4 VQQSSNGSSFNDY-NDVNLTIRILFHGREVGNVIGKGGETVKNIRDQSGARVLISDGSTP 62
Query: 63 ERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIR 122
ERI+TI K E + ++E ++ GD +NG K +
Sbjct: 63 ERIVTITGTTNAICKATELIGLKVEEFFER--------QNGD-WNG------PKAPLTFK 107
Query: 123 LIVHQSQAGCIIGKGGTKIKELRDTFDA 150
LIV SQ G IIGKGG KIKE+R++ A
Sbjct: 108 LIVPASQCGFIIGKGGCKIKEIRESSGA 135
>gi|432092458|gb|ELK25073.1| Poly(rC)-binding protein 4 [Myotis davidii]
Length = 403
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LR+L+ + GS+IGK G + R+R A +T+ + PERI TI +
Sbjct: 17 TLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAV 76
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ LDE + NGG V + +RL++ SQ G +IGK GT
Sbjct: 77 SMIAFKLDE-----------DLCSAPANGGTV---SRPPVTLRLVIPASQCGSLIGKAGT 122
Query: 140 KIKELRDTFDA 150
KIKE+R+T A
Sbjct: 123 KIKEIRETTGA 133
>gi|363746094|ref|XP_003643523.1| PREDICTED: poly(rC)-binding protein 4-like, partial [Gallus gallus]
Length = 239
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 18/131 (13%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LR+L+ + GS+IGK G + R+R A +T+ + PERI TI + + +
Sbjct: 18 TLTLRMLMHGKEIGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTDAVFRAV 77
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ L+ ED GDG G+ +RL++ SQ G +IGK GT
Sbjct: 78 SMIAFKLE------------EDLGDGTAA------GRTPVTLRLVIPASQCGSLIGKAGT 119
Query: 140 KIKELRDTFDA 150
KI+E+R++ A
Sbjct: 120 KIREIRESSGA 130
>gi|340726176|ref|XP_003401437.1| PREDICTED: poly(rC)-binding protein 3-like [Bombus terrestris]
Length = 466
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 12/128 (9%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
+RL++ + GS+IGK G + R R + A + + D PERI+T+ + K +
Sbjct: 20 IRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSCPERIVTVTGPTNSIFKAFTLI 79
Query: 83 LPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
+E ++ ++ G GG+ + +RLIV SQ G +IGKGG+KIK
Sbjct: 80 CKKFEEWCSQF------------HDIQGSGGVPRPPITLRLIVPASQCGSLIGKGGSKIK 127
Query: 143 ELRDTFDA 150
E+R+ A
Sbjct: 128 EIREVTGA 135
Score = 37.0 bits (84), Expect = 2.8, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTI 68
+ LRL++P+ GS+IGKGGS I +R AS+ V P ER +TI
Sbjct: 104 ITLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQVASDMLPNSTERAVTI 154
>gi|350405177|ref|XP_003487350.1| PREDICTED: poly(rC)-binding protein 3-like [Bombus impatiens]
Length = 466
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 12/128 (9%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
+RL++ + GS+IGK G + R R + A + + D PERI+T+ + K +
Sbjct: 20 IRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSCPERIVTVTGPTNSIFKAFTLI 79
Query: 83 LPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
+E ++ ++ G GG+ + +RLIV SQ G +IGKGG+KIK
Sbjct: 80 CKKFEEWCSQF------------HDIQGSGGVPRPPITLRLIVPASQCGSLIGKGGSKIK 127
Query: 143 ELRDTFDA 150
E+R+ A
Sbjct: 128 EIREVTGA 135
Score = 37.0 bits (84), Expect = 2.7, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTI 68
+ LRL++P+ GS+IGKGGS I +R AS+ V P ER +TI
Sbjct: 104 ITLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQVASDMLPNSTERAVTI 154
>gi|328778258|ref|XP_391921.3| PREDICTED: poly(rC)-binding protein 3-like [Apis mellifera]
Length = 466
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 12/128 (9%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
+RL++ + GS+IGK G + R R + A + + D PERI+T+ + K +
Sbjct: 20 IRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSCPERIVTVTGPTNSIFKAFTLI 79
Query: 83 LPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
+E ++ ++ G GG+ + +RLIV SQ G +IGKGG+KIK
Sbjct: 80 CKKFEEWCSQF------------HDIQGSGGVPRPPITLRLIVPASQCGSLIGKGGSKIK 127
Query: 143 ELRDTFDA 150
E+R+ A
Sbjct: 128 EIREVTGA 135
Score = 37.0 bits (84), Expect = 2.7, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTI 68
+ LRL++P+ GS+IGKGGS I +R AS+ V P ER +TI
Sbjct: 104 ITLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQVASDMLPNSTERAVTI 154
>gi|198465289|ref|XP_001353580.2| GA20351 [Drosophila pseudoobscura pseudoobscura]
gi|198150092|gb|EAL31093.2| GA20351 [Drosophila pseudoobscura pseudoobscura]
Length = 330
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 15/127 (11%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RL++ + GS+IGK G + R R + A + + D PERI+T+
Sbjct: 24 LTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSCPERIVTVSG-------TTN 76
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
+ A I +K+ E+ +N G +GK IRLIV SQ G +IGK G+K
Sbjct: 77 AIFSAFTLITKKF------EEWCSQFNDAG--KIGKTQIPIRLIVPASQCGSLIGKSGSK 128
Query: 141 IKELRDT 147
IKE+R T
Sbjct: 129 IKEIRQT 135
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 60/159 (37%), Gaps = 29/159 (18%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFAELE 73
G + +RL++P+ GS+IGK GS I +R S+ V P ER +T+ E
Sbjct: 103 GKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVASEMLPNSTERAVTLSGSAE 162
Query: 74 NGLKVIEEVLPALDEI--RQKYGKG---RGGEDGGDGYNGGGVGGLGK------------ 116
+ I ++ + E R K G G N GG+
Sbjct: 163 QITQCIYQICLVMLESCPRSTVAKNPLASLAALGLAGMNPASTGGINHTAALAALAGSQL 222
Query: 117 ---------DDYDIRLIVHQSQAGCIIGKGGTKIKELRD 146
+ V GCIIGKGGTKI E+R
Sbjct: 223 RTANAANRAQQQQHEMTVSNDLIGCIIGKGGTKIAEIRQ 261
>gi|355709455|gb|AES03597.1| poly binding protein 4 [Mustela putorius furo]
Length = 206
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 63/130 (48%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ LR+L+ + GS+IGK G + R+R A +T+ + PERI TI +
Sbjct: 27 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVS 86
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
+ LDE + NGG V + +RL++ SQ G +IGK GTK
Sbjct: 87 MIAFKLDE-----------DLCAAPANGGNV---SRPPVTLRLVIPASQCGSLIGKAGTK 132
Query: 141 IKELRDTFDA 150
IKE+R+T A
Sbjct: 133 IKEIRETTGA 142
>gi|383862493|ref|XP_003706718.1| PREDICTED: poly(rC)-binding protein 4-like isoform 1 [Megachile
rotundata]
Length = 466
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 12/128 (9%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
+RL++ + GS+IGK G + R R + A + + D PERI+T+ + K +
Sbjct: 20 IRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSCPERIVTVTGPTNSIFKAFTLI 79
Query: 83 LPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
+E ++ + G GG+ + +RLIV SQ G +IGKGG+KIK
Sbjct: 80 CKKFEEWCSQFHDIQSG------------GGVPRPPITLRLIVPASQCGSLIGKGGSKIK 127
Query: 143 ELRDTFDA 150
E+R+ A
Sbjct: 128 EIREVTGA 135
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTI 68
+ LRL++P+ GS+IGKGGS I +R AS+ V P ER +TI
Sbjct: 104 ITLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQVASEMLPNSTERAVTI 154
Score = 35.0 bits (79), Expect = 9.4, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC 59
SN R + N+ + +P+ + G +IGKGG+ IA +R A + + +C
Sbjct: 260 SNTNRQQPAANNQTHEMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNC 310
>gi|326935820|ref|XP_003213964.1| PREDICTED: poly(rC)-binding protein 4-like, partial [Meleagris
gallopavo]
Length = 232
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 18/131 (13%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LR+L+ + GS+IGK G + R+R A +T+ + PERI TI + + +
Sbjct: 18 TLTLRMLMHGKEIGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTDAVFRAV 77
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ L+ ED GDG G+ +RL++ SQ G +IGK GT
Sbjct: 78 SMIAFKLE------------EDLGDGTAA------GRTPVTLRLVIPASQCGSLIGKAGT 119
Query: 140 KIKELRDTFDA 150
KI+E+R++ A
Sbjct: 120 KIREIRESSGA 130
>gi|326505208|dbj|BAK02991.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 513
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 46/138 (33%), Positives = 72/138 (52%), Gaps = 10/138 (7%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--PERILTIF 69
KR+ G P D R+L+P++ G++IG+ G I ++ KA + + D P ER + I
Sbjct: 105 KRWPGWPGDSVFRILVPAQKVGAIIGRKGEFIKKMCEQSKARIKILDGPPGVTERAVIIS 164
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
A+ E E + PA+D + + + + G DG G G +G RL+V SQ
Sbjct: 165 AKDEPD----EPISPAMDGLLRIHKRITDGSDGEFGQPQRGASNVGP----TRLLVPASQ 216
Query: 130 AGCIIGKGGTKIKELRDT 147
AG +IGK G IK ++D+
Sbjct: 217 AGSLIGKQGATIKSIQDS 234
>gi|386771590|ref|NP_001246875.1| mushroom-body expressed, isoform K [Drosophila melanogaster]
gi|383292065|gb|AFH04546.1| mushroom-body expressed, isoform K [Drosophila melanogaster]
Length = 573
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 44/125 (35%), Positives = 64/125 (51%), Gaps = 15/125 (12%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
+RL++ + GS+IGK G + R R + A + + D PERI+T+ +
Sbjct: 26 IRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSCPERIVTVSG-------TTNAI 78
Query: 83 LPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
A I +K+ E+ +N VG +GK IRLIV SQ G +IGK G+KIK
Sbjct: 79 FSAFTLITKKF------EEWCSQFND--VGKVGKTQIPIRLIVPASQCGSLIGKSGSKIK 130
Query: 143 ELRDT 147
E+R T
Sbjct: 131 EIRQT 135
>gi|431913482|gb|ELK15157.1| Poly(rC)-binding protein 4 [Pteropus alecto]
Length = 403
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LR+L+ + GS+IGK G + R+R A +T+ + PERI TI +
Sbjct: 17 TLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAV 76
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ LDE + NGG + + +RL++ SQ G +IGK GT
Sbjct: 77 SMIAFKLDE-----------DLCSATANGGNI---SRPPVTLRLVIPASQCGSLIGKAGT 122
Query: 140 KIKELRDTFDA 150
KIKE+R+T A
Sbjct: 123 KIKEIRETTGA 133
>gi|260829253|ref|XP_002609576.1| hypothetical protein BRAFLDRAFT_87781 [Branchiostoma floridae]
gi|229294938|gb|EEN65586.1| hypothetical protein BRAFLDRAFT_87781 [Branchiostoma floridae]
Length = 408
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 66/130 (50%), Gaps = 15/130 (11%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RL++ + GS+IGK G I R R + A + + D PERI+TI EN LK
Sbjct: 20 LTIRLIMQGKDVGSIIGKKGDTIKRFREESGARINISDGSSPERIVTITGSTENILK--- 76
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
A + I +K+ ED + V +RLIV SQ G +IGKGG+K
Sbjct: 77 ----AFNMIGKKF-----EEDMKAAHVNSSV---PVPPVTLRLIVPASQCGSLIGKGGSK 124
Query: 141 IKELRDTFDA 150
IKE+R+ A
Sbjct: 125 IKEIREVTGA 134
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
V LRL++P+ GS+IGKGGS I +R AS+ V
Sbjct: 103 VTLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQV 138
>gi|116007842|ref|NP_001036619.1| mushroom-body expressed, isoform D [Drosophila melanogaster]
gi|113194920|gb|ABI31266.1| mushroom-body expressed, isoform D [Drosophila melanogaster]
Length = 539
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 44/125 (35%), Positives = 64/125 (51%), Gaps = 15/125 (12%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
+RL++ + GS+IGK G + R R + A + + D PERI+T+ +
Sbjct: 26 IRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSCPERIVTVSG-------TTNAI 78
Query: 83 LPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
A I +K+ E+ +N VG +GK IRLIV SQ G +IGK G+KIK
Sbjct: 79 FSAFTLITKKF------EEWCSQFND--VGKVGKTQIPIRLIVPASQCGSLIGKSGSKIK 130
Query: 143 ELRDT 147
E+R T
Sbjct: 131 EIRQT 135
>gi|125544080|gb|EAY90219.1| hypothetical protein OsI_11787 [Oryza sativa Indica Group]
Length = 542
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 74/139 (53%), Gaps = 14/139 (10%)
Query: 14 FRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASV----TVPDCPGPERILTIF 69
+ GP+D R L PSR GS+IG+GG ++R D +A + +V C ER++TIF
Sbjct: 33 YAPGPDDTVYRYLCPSRKIGSIIGRGGEIAKQMRADTQAKIRIGESVSGC--DERVITIF 90
Query: 70 A---ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVH 126
+ E + ++V PA D + + + K +D G+ + G+ + +RL+V
Sbjct: 91 SSSRETNTLVDAEDKVCPAQDALFRVHEKLSIDDDIGNEESDEGLAQV-----TVRLLVP 145
Query: 127 QSQAGCIIGKGGTKIKELR 145
Q GCIIGKGG I+ +R
Sbjct: 146 SDQIGCIIGKGGHIIQGIR 164
>gi|126336339|ref|XP_001367908.1| PREDICTED: poly(rC)-binding protein 4-like isoform 1 [Monodelphis
domestica]
Length = 410
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LR+++ + GS+IGK G + R+R A +T+ + PERI TI +
Sbjct: 17 TLTLRMIMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTGAVFHAV 76
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ LDE D G GG + K +RL++ SQ G +IGK GT
Sbjct: 77 SMIAFKLDE------------DLCTGPPNGG--SISKPPVTLRLVIPASQCGSLIGKAGT 122
Query: 140 KIKELRDTFDA 150
KIKE+R+T A
Sbjct: 123 KIKEIRETTGA 133
>gi|115453243|ref|NP_001050222.1| Os03g0376800 [Oryza sativa Japonica Group]
gi|18921324|gb|AAL82529.1|AC084766_15 putative nucleic acid binding protein [Oryza sativa Japonica Group]
gi|108708431|gb|ABF96226.1| KH domain-containing protein, putative, expressed [Oryza sativa
Japonica Group]
gi|108708432|gb|ABF96227.1| KH domain-containing protein, putative, expressed [Oryza sativa
Japonica Group]
gi|113548693|dbj|BAF12136.1| Os03g0376800 [Oryza sativa Japonica Group]
gi|125586438|gb|EAZ27102.1| hypothetical protein OsJ_11034 [Oryza sativa Japonica Group]
gi|215686826|dbj|BAG89676.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215695345|dbj|BAG90536.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704897|dbj|BAG94925.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 542
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 74/139 (53%), Gaps = 14/139 (10%)
Query: 14 FRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASV----TVPDCPGPERILTIF 69
+ GP+D R L PSR GS+IG+GG ++R D +A + +V C ER++TIF
Sbjct: 33 YAPGPDDTVYRYLCPSRKIGSIIGRGGEIAKQMRADTQAKIRIGESVSGC--DERVITIF 90
Query: 70 A---ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVH 126
+ E + ++V PA D + + + K +D G+ + G+ + +RL+V
Sbjct: 91 SSSRETNTLVDAEDKVCPAQDALFRVHEKLSIDDDIGNEESDEGLAQV-----TVRLLVP 145
Query: 127 QSQAGCIIGKGGTKIKELR 145
Q GCIIGKGG I+ +R
Sbjct: 146 SDQIGCIIGKGGHIIQGIR 164
>gi|338714774|ref|XP_003363150.1| PREDICTED: poly(rC)-binding protein 4-like isoform 2 [Equus
caballus]
Length = 360
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 14/128 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LR+L+ + GS+IGK G + R+R A +T+ + PERI TI +
Sbjct: 17 TLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAV 76
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ LDE + NGG V + +RL++ SQ G +IGK GT
Sbjct: 77 SMIAFKLDE-----------DLCAAPTNGGSV---SRPPVTLRLVIPASQCGSLIGKAGT 122
Query: 140 KIKELRDT 147
KIKE+R++
Sbjct: 123 KIKEIRES 130
>gi|449473856|ref|XP_004186185.1| PREDICTED: LOW QUALITY PROTEIN: poly(rC) binding protein 4
[Taeniopygia guttata]
Length = 245
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 21/141 (14%)
Query: 16 GGPNDVEL------RLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIF 69
G P + EL R+L+ + GS+IGK G + R+R A +T+ + PERI TI
Sbjct: 12 GSPEETELSITLTLRMLMHGKEIGSIIGKKGETVKRIREQSTARITISEGSCPERITTIT 71
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
+ + + + L+E G GGDG + G+ +RL++ SQ
Sbjct: 72 GSTDAVFRAVSMIAFKLEE---DLGA------GGDGVSA------GRAPVTLRLVIPASQ 116
Query: 130 AGCIIGKGGTKIKELRDTFDA 150
G +IGK G KI+E+R++ A
Sbjct: 117 CGSLIGKAGAKIREIRESTGA 137
>gi|348581995|ref|XP_003476762.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Cavia porcellus]
Length = 360
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 14/128 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LR+L+ + GS+IGK G + R+R A +T+ + PERI TI +
Sbjct: 17 TLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAV 76
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ LDE + NGG V + +RL++ SQ G +IGK GT
Sbjct: 77 SMIAFKLDE-----------DLCAAPANGGSV---SRPPVTLRLVIPASQCGSLIGKAGT 122
Query: 140 KIKELRDT 147
KIKE+R++
Sbjct: 123 KIKEIRES 130
>gi|195022402|ref|XP_001985568.1| GH14429 [Drosophila grimshawi]
gi|193899050|gb|EDV97916.1| GH14429 [Drosophila grimshawi]
Length = 362
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 15/127 (11%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ +RL++ + GS+IGK G + R R + A + + D PERI+T+
Sbjct: 23 TLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSCPERIVTVSG-------TT 75
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ A I +K+ E+ +N VG +GK IRLIV SQ G +IGK G+
Sbjct: 76 SAIFAAFTLITKKF------EEWCSQFND--VGKVGKTQIPIRLIVPASQCGSLIGKSGS 127
Query: 140 KIKELRD 146
KIKE+R
Sbjct: 128 KIKEIRQ 134
Score = 36.2 bits (82), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFAELE 73
G + +RL++P+ GS+IGK GS I +R + S+ V P ER +T+ E
Sbjct: 103 GKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQNTGCSIQVASEMLPNSTERAVTLSGSAE 162
Query: 74 NGLKVIEEVLPALDE 88
+ I ++ + E
Sbjct: 163 QITQCIYQICLVMLE 177
>gi|426340777|ref|XP_004034304.1| PREDICTED: poly(rC)-binding protein 4 isoform 4 [Gorilla gorilla
gorilla]
Length = 360
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 14/128 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LR+L+ + GS+IGK G + R+R A +T+ + PERI TI +
Sbjct: 17 TLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAV 76
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ LDE + NGG V + +RL++ SQ G +IGK GT
Sbjct: 77 SMIAFKLDE-----------DLCAAPANGGNV---SRPPVTLRLVIPASQCGSLIGKAGT 122
Query: 140 KIKELRDT 147
KIKE+R++
Sbjct: 123 KIKEIRES 130
>gi|335299140|ref|XP_003358506.1| PREDICTED: poly(rC)-binding protein 4-like isoform 2 [Sus scrofa]
Length = 360
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 14/128 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LR+L+ + GS+IGK G + R+R A +T+ + PERI TI +
Sbjct: 17 TLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAV 76
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ LDE + NGG V + +RL++ SQ G +IGK GT
Sbjct: 77 SMIAFKLDE-----------DLCAAPANGGNV---SRPPVTLRLVIPASQCGSLIGKAGT 122
Query: 140 KIKELRDT 147
KIKE+R++
Sbjct: 123 KIKEIRES 130
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 58/132 (43%), Gaps = 13/132 (9%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
V LRL+IP+ GS+IGK G+ I +R T+P P + T+ G V
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRESPPKGATIPYHPS-LSLGTVLLSTNQGFSVQG 160
Query: 81 E---VLPA-LDEIRQKYGKGRGGEDGGDGYNGGGVGGL--GKDDYDIRLIVHQSQAGCII 134
+ V PA + +++Q G + V GL G +V GC+I
Sbjct: 161 QYGAVTPAEVTKLQQLSGHAV------PFASPSMVPGLDPGTQTSSQEFLVPNDLIGCVI 214
Query: 135 GKGGTKIKELRD 146
G+ G+KI E+R
Sbjct: 215 GRQGSKISEIRQ 226
>gi|410951301|ref|XP_003982336.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Felis catus]
Length = 360
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 14/128 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LR+L+ + GS+IGK G + R+R A +T+ + PERI TI +
Sbjct: 17 TLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAV 76
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ LDE + NGG V + +RL++ SQ G +IGK GT
Sbjct: 77 SMIAFKLDE-----------DLCAAPANGGNV---SRPPVTLRLVIPASQCGSLIGKAGT 122
Query: 140 KIKELRDT 147
KIKE+R++
Sbjct: 123 KIKEIRES 130
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 58/133 (43%), Gaps = 13/133 (9%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
V LRL+IP+ GS+IGK G+ I +R T+P P + T+ G V
Sbjct: 101 PVTLRLVIPASQCGSLIGKAGTKIKEIRESPPKGATIPYHPS-LSLGTVLLSANQGFSVQ 159
Query: 80 EE---VLPA-LDEIRQKYGKGRGGEDGGDGYNGGGVGGL--GKDDYDIRLIVHQSQAGCI 133
+ V PA + +++Q G + V GL G +V GC+
Sbjct: 160 GQYGAVTPAEVTKLQQLSGHAV------PFASPSMVPGLDPGTQTSSQEFLVPNDLIGCV 213
Query: 134 IGKGGTKIKELRD 146
IG+ G+KI E+R
Sbjct: 214 IGRQGSKISEIRQ 226
>gi|291575150|ref|NP_065151.2| poly(rC)-binding protein 4 isoform a [Homo sapiens]
gi|114587204|ref|XP_001170813.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Pan troglodytes]
gi|16877720|gb|AAH17098.1| PCBP4 protein [Homo sapiens]
gi|119585570|gb|EAW65166.1| poly(rC) binding protein 4, isoform CRA_b [Homo sapiens]
Length = 360
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 14/128 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LR+L+ + GS+IGK G + R+R A +T+ + PERI TI +
Sbjct: 17 TLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAV 76
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ LDE + NGG V + +RL++ SQ G +IGK GT
Sbjct: 77 SMIAFKLDE-----------DLCAAPANGGNV---SRPPVTLRLVIPASQCGSLIGKAGT 122
Query: 140 KIKELRDT 147
KIKE+R++
Sbjct: 123 KIKEIRES 130
>gi|301767224|ref|XP_002919001.1| PREDICTED: poly(rC)-binding protein 4-like isoform 2 [Ailuropoda
melanoleuca]
Length = 360
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 14/128 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LR+L+ + GS+IGK G + R+R A +T+ + PERI TI +
Sbjct: 17 TLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAV 76
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ LDE + NGG V + +RL++ SQ G +IGK GT
Sbjct: 77 SMIAFKLDE-----------DLCAAPANGGNV---SRPPVTLRLVIPASQCGSLIGKAGT 122
Query: 140 KIKELRDT 147
KIKE+R++
Sbjct: 123 KIKEIRES 130
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 58/133 (43%), Gaps = 13/133 (9%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
V LRL+IP+ GS+IGK G+ I +R T+P P + T+ G V
Sbjct: 101 PVTLRLVIPASQCGSLIGKAGTKIKEIRESPPKGATIPYHPS-LSLGTVLLSANQGFSVQ 159
Query: 80 EE---VLPA-LDEIRQKYGKGRGGEDGGDGYNGGGVGGL--GKDDYDIRLIVHQSQAGCI 133
+ V PA + +++Q G + V GL G +V GC+
Sbjct: 160 GQYGAVTPAEVTKLQQLSGHAV------PFASPSMVPGLDPGAQTSSQEFLVPNDLIGCV 213
Query: 134 IGKGGTKIKELRD 146
IG+ G+KI E+R
Sbjct: 214 IGRQGSKISEIRQ 226
>gi|281366597|ref|NP_001163493.1| mushroom-body expressed, isoform E [Drosophila melanogaster]
gi|386771584|ref|NP_001246873.1| mushroom-body expressed, isoform F [Drosophila melanogaster]
gi|134085557|gb|ABO52837.1| IP17311p [Drosophila melanogaster]
gi|272455272|gb|ACZ94764.1| mushroom-body expressed, isoform E [Drosophila melanogaster]
gi|383292063|gb|AFH04544.1| mushroom-body expressed, isoform F [Drosophila melanogaster]
Length = 557
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 44/125 (35%), Positives = 63/125 (50%), Gaps = 19/125 (15%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
+RL++ + GS+IGK G + R R + A + + D PERI+T+ +
Sbjct: 26 IRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSCPERIVTVSG-------TTNAI 78
Query: 83 LPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
A I +K+ E+ D VG +GK IRLIV SQ G +IGK G+KIK
Sbjct: 79 FSAFTLITKKF------EEFND------VGKVGKTQIPIRLIVPASQCGSLIGKSGSKIK 126
Query: 143 ELRDT 147
E+R T
Sbjct: 127 EIRQT 131
>gi|392922650|ref|NP_001256769.1| Protein Y59A8B.10, isoform a [Caenorhabditis elegans]
gi|11065662|emb|CAC14410.1| Protein Y59A8B.10, isoform a [Caenorhabditis elegans]
Length = 413
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 16/137 (11%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVP----DCPG-PERILTIFAE 71
G + + +++LIPS G++IGKGG + L+ND V + PG ERI +
Sbjct: 38 GGDHLSIKILIPSNAVGAIIGKGGEAMRNLKNDNNCRVQMSKNSETYPGTSERICLVKGR 97
Query: 72 LENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAG 131
L N + VIE + D+IR+K +GG D D N +I++++ + AG
Sbjct: 98 LNNIMAVIESI---QDKIREKCAD-QGGSDAFDHKNTS-------RGAEIKIVMPNTSAG 146
Query: 132 CIIGKGGTKIKELRDTF 148
+IGK G IK++R+ F
Sbjct: 147 MVIGKSGANIKDIREQF 163
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 16/94 (17%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP-------ERILTIF---- 69
E+++++P+ AG VIGK G+NI +R F + V G ER++T+
Sbjct: 134 AEIKIVMPNTSAGMVIGKSGANIKDIREQFGCQIQVYPKAGSVEAKTSLERVVTVAHDEA 193
Query: 70 -AELENGLKVIEEVLP----ALDEIRQKYGKGRG 98
A L+ +V+E+V A + ++ +GKG G
Sbjct: 194 SALLQAASRVLEKVASDPHHASEINKEDFGKGSG 227
>gi|386771593|ref|NP_730700.2| mushroom-body expressed, isoform G [Drosophila melanogaster]
gi|442634089|ref|NP_001262197.1| mushroom-body expressed, isoform M [Drosophila melanogaster]
gi|383292066|gb|AAN12194.2| mushroom-body expressed, isoform G [Drosophila melanogaster]
gi|440216174|gb|AGB94890.1| mushroom-body expressed, isoform M [Drosophila melanogaster]
Length = 359
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 64/127 (50%), Gaps = 19/127 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RL++ + GS+IGK G + R R + A + + D PERI+T+
Sbjct: 24 LTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSCPERIVTVSG-------TTN 76
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
+ A I +K+ E+ D VG +GK IRLIV SQ G +IGK G+K
Sbjct: 77 AIFSAFTLITKKF------EEFND------VGKVGKTQIPIRLIVPASQCGSLIGKSGSK 124
Query: 141 IKELRDT 147
IKE+R T
Sbjct: 125 IKEIRQT 131
Score = 35.0 bits (79), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFAELE 73
G + +RL++P+ GS+IGK GS I +R S+ V P ER +T+ E
Sbjct: 99 GKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVASEMLPNSTERAVTLSGSAE 158
Query: 74 NGLKVIEEVLPALDE 88
+ I ++ + E
Sbjct: 159 QITQCIYQICLVMLE 173
>gi|410900550|ref|XP_003963759.1| PREDICTED: poly(rC)-binding protein 3-like [Takifugu rubripes]
Length = 434
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 65/131 (49%), Gaps = 14/131 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LRLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 16 TLTLRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGSSPERIVTITG-------AT 68
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
E + A I QK+ ED + V K +RL+ SQ G +IGKGG+
Sbjct: 69 EAIFRAFAMIAQKF-----EEDISAAMSNSSV--TSKPPVTLRLVFPGSQCGSLIGKGGS 121
Query: 140 KIKELRDTFDA 150
KIKE+R+T A
Sbjct: 122 KIKEIRETTGA 132
>gi|444513545|gb|ELV10391.1| Poly(rC)-binding protein 4 [Tupaia chinensis]
Length = 399
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 14/131 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LR+L+ + GS+IGK G + R+R A +T+ + PERI TI +
Sbjct: 17 TLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAV 76
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ LDE + NG V + +RL++ SQ G +IGK GT
Sbjct: 77 SMIAFKLDE-----------DLCAAPANGSNV---SRPPVTLRLVIPASQCGSLIGKAGT 122
Query: 140 KIKELRDTFDA 150
KIKE+R+T A
Sbjct: 123 KIKEIRETTGA 133
>gi|395516948|ref|XP_003762645.1| PREDICTED: poly(rC)-binding protein 4 [Sarcophilus harrisii]
Length = 338
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 63/130 (48%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ LR+++ + GS+IGK G + R+R A +T+ + PERI TI +
Sbjct: 18 LTLRMIMHGKEVGSIIGKKGETVKRIREQSCARITISEGSCPERITTITGSTGAVFHAVS 77
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
+ LDE D G GG + K +RL++ SQ G +IGK GTK
Sbjct: 78 MIAFKLDE------------DLCTGPPNGG--SISKPPVTLRLVIPASQCGSLIGKAGTK 123
Query: 141 IKELRDTFDA 150
IKE+R+T A
Sbjct: 124 IKEIRETTGA 133
>gi|386771588|ref|NP_001246874.1| mushroom-body expressed, isoform I [Drosophila melanogaster]
gi|383292064|gb|AFH04545.1| mushroom-body expressed, isoform I [Drosophila melanogaster]
Length = 539
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 44/125 (35%), Positives = 63/125 (50%), Gaps = 19/125 (15%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
+RL++ + GS+IGK G + R R + A + + D PERI+T+ +
Sbjct: 26 IRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSCPERIVTVSG-------TTNAI 78
Query: 83 LPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
A I +K+ E+ D VG +GK IRLIV SQ G +IGK G+KIK
Sbjct: 79 FSAFTLITKKF------EEFND------VGKVGKTQIPIRLIVPASQCGSLIGKSGSKIK 126
Query: 143 ELRDT 147
E+R T
Sbjct: 127 EIRQT 131
>gi|432865686|ref|XP_004070563.1| PREDICTED: poly(rC)-binding protein 4-like [Oryzias latipes]
Length = 467
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 14/128 (10%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
LRLL+ + GS+IGK G + R+R + A V + + PERI+TI ++ + +
Sbjct: 29 LRLLMHGKEVGSIIGKKGETVKRIREESSARVNISEGSCPERIITITGSTDSVFRAFTMI 88
Query: 83 LPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
L+ ED G + K +RL++ SQ G +IGKGG KIK
Sbjct: 89 TYKLE------------EDLTALVANGTIS--SKPPVTLRLVIPASQCGSLIGKGGAKIK 134
Query: 143 ELRDTFDA 150
E+R++ A
Sbjct: 135 EIRESTGA 142
Score = 37.0 bits (84), Expect = 2.7, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
V LRL+IP+ GS+IGKGG+ I +R A + V
Sbjct: 111 VTLRLVIPASQCGSLIGKGGAKIKEIRESTGAQIQV 146
>gi|326512112|dbj|BAJ96037.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 541
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 75/139 (53%), Gaps = 14/139 (10%)
Query: 14 FRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASV----TVPDCPGPERILTIF 69
+ GP+D R L SR GS+IG+GG +LR+D +A + +VP C ER++TIF
Sbjct: 33 YAPGPDDTVYRYLCTSRKIGSIIGRGGEIAKQLRSDTQAKIRIGESVPAC--DERVITIF 90
Query: 70 AELE--NGLKVIEE-VLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVH 126
+ N ++ E+ V PA D + + + K +DG N LG+ +RL+V
Sbjct: 91 SSSRETNTIEDTEDKVCPAQDALFRVHEK-LATDDG--PVNKENEESLGQ--VTVRLLVP 145
Query: 127 QSQAGCIIGKGGTKIKELR 145
Q GCIIGKGG I+ +R
Sbjct: 146 SDQIGCIIGKGGHIIQGIR 164
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 115 GKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
G+ Y RL+V S+ GC+IGKGG+ I E+R T A
Sbjct: 361 GEPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRA 396
>gi|334343559|ref|XP_003341817.1| PREDICTED: poly(rC)-binding protein 4-like isoform 2 [Monodelphis
domestica]
Length = 367
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 14/128 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LR+++ + GS+IGK G + R+R A +T+ + PERI TI +
Sbjct: 17 TLTLRMIMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTGAVFHAV 76
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ LD ED G G G + K +RL++ SQ G +IGK GT
Sbjct: 77 SMIAFKLD------------EDLCTGPPNG--GSISKPPVTLRLVIPASQCGSLIGKAGT 122
Query: 140 KIKELRDT 147
KIKE+R++
Sbjct: 123 KIKEIRES 130
>gi|270001418|gb|EEZ97865.1| hypothetical protein TcasGA2_TC000237 [Tribolium castaneum]
Length = 415
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 11/130 (8%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RL++ + GS+IGK G + R R + A + + D PERI+T+ K
Sbjct: 15 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSCPERIVTVTGSTNAIFKAFT 74
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
+ +E ++ N GG G+ + +RLIV SQ G +IGKGG+K
Sbjct: 75 LICKKFEEWCSQF----------QDINSGG-SGVPRPPITLRLIVPASQCGSLIGKGGSK 123
Query: 141 IKELRDTFDA 150
IKE+R+ A
Sbjct: 124 IKEIREVTGA 133
Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFAELENGLK 77
+ LRL++P+ GS+IGKGGS I +R AS+ V P ER +TI E +
Sbjct: 102 ITLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQVASEMLPNSTERAVTISGTGEAITQ 161
Query: 78 VIEEVLPALDE 88
I + + E
Sbjct: 162 CIYHICTVMLE 172
>gi|241025456|ref|XP_002406183.1| poly(rc) binding protein, putative [Ixodes scapularis]
gi|215491885|gb|EEC01526.1| poly(rc) binding protein, putative [Ixodes scapularis]
Length = 398
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 14/114 (12%)
Query: 33 GSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEIRQK 92
GS+IGK G NI + R + A + + D PERI+T+ E +L A I +K
Sbjct: 5 GSIIGKKGDNIKKFREESGAKINISDGSCPERIVTVTGS-------TEAILKAFSLIARK 57
Query: 93 YGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRD 146
+ E+ + G L K +RLIV SQ G +IGKGG+KIKE+R+
Sbjct: 58 F------EEVSTSSHSNG-SHLPKPPVTLRLIVPASQCGSLIGKGGSKIKEIRE 104
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 66/172 (38%), Gaps = 47/172 (27%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFAELENGLK 77
V LRL++P+ GS+IGKGGS I +R + +AS+ V P ER +T+ + K
Sbjct: 77 VTLRLIVPASQCGSLIGKGGSKIKEIR-EARASIQVASEMLPNSTERAVTVSGTADAITK 135
Query: 78 VIEEVLPALDE---------IRQKYGKGRGGEDGGDGYNGGGVGGLGKDD---------- 118
I ++ + E R K GG Y G + D
Sbjct: 136 CIYQICCVMMESPPKGATIPYRPKPAMPPVIFAGGQAYTVQGQYAIPHPDLTKLHQLALQ 195
Query: 119 -------YDIRLIVHQSQA-----------------GCIIGKGGTKIKELRD 146
+ + I Q+ GCIIGKGG+KI E+R
Sbjct: 196 HAPLLPGHSVGAINPQAAIATASTTTTEMTIPNDLIGCIIGKGGSKINEIRQ 247
>gi|357112153|ref|XP_003557874.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 538
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 70/135 (51%), Gaps = 14/135 (10%)
Query: 18 PNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASV----TVPDCPGPERILTIFA--- 70
P+D R L SR GS+IG+GG +LR D +A + +VP C ER++TIF+
Sbjct: 37 PDDTVYRYLCASRKIGSIIGRGGEIAKQLRTDTQAKIRIGESVPGC--DERVITIFSSSR 94
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
E ++V PA D + + + K + GD N G+ + +RL+V Q
Sbjct: 95 ETNTVEDTEDKVCPAQDALFRVHEKLITDDGPGDEENEEGLAQV-----IVRLLVPSDQI 149
Query: 131 GCIIGKGGTKIKELR 145
GCIIGKGG I+ +R
Sbjct: 150 GCIIGKGGHIIQGIR 164
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 115 GKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
G+ Y RL+V S+ GC+IGKGG+ I E+R T A
Sbjct: 361 GEPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRA 396
>gi|432906521|ref|XP_004077571.1| PREDICTED: poly(rC)-binding protein 3-like [Oryzias latipes]
Length = 434
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 64/130 (49%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ LRLL+ + GS+IGK G + ++R + A + + + PERI+TI E
Sbjct: 17 LTLRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGSSPERIVTITGPTEG------ 70
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
+ A I QK+ ED V K +RL+ SQ G +IGKGG+K
Sbjct: 71 -IFRAFSMIAQKF-----EEDITAAMTNSNV--TSKPPVTLRLVFPGSQCGSLIGKGGSK 122
Query: 141 IKELRDTFDA 150
IKE+R+T A
Sbjct: 123 IKEIRETTGA 132
>gi|348507477|ref|XP_003441282.1| PREDICTED: poly(rC)-binding protein 3-like [Oreochromis niloticus]
Length = 434
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 64/131 (48%), Gaps = 14/131 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LRLL+ + GS+IGK G + ++R + A + + + PERI+TI E +
Sbjct: 16 TLTLRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGSSPERIVTITGPTEGIFR-- 73
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
A I QK+ ED V K +RL+ SQ G +IGKGG+
Sbjct: 74 -----AFSMIAQKF-----EEDITAAMTNSNV--TSKPPVTLRLVFPGSQCGSLIGKGGS 121
Query: 140 KIKELRDTFDA 150
KIKE+R+T A
Sbjct: 122 KIKEIRETTGA 132
>gi|55742577|ref|NP_998282.1| poly(rC)-binding protein 4 [Danio rerio]
gi|33604078|gb|AAH56323.1| Zgc:65870 [Danio rerio]
gi|41946775|gb|AAH65955.1| Zgc:65870 [Danio rerio]
Length = 442
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 14/127 (11%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LRLL+ + GS+IGK G + R+R + A + + + PERI+TI E +
Sbjct: 4 TLTLRLLMHGKEVGSIIGKKGETVKRIREESSARINISEGSCPERIITITGATECVFRAF 63
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ L+ ED G V K +RL++ SQ G +IGKGG+
Sbjct: 64 TMITIKLE------------EDLAALVANGTVT--SKPPVTLRLVIPASQCGSLIGKGGS 109
Query: 140 KIKELRD 146
KIKE+R+
Sbjct: 110 KIKEIRE 116
Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 23/36 (63%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
V LRL+IP+ GS+IGKGGS I +R A V V
Sbjct: 89 VTLRLVIPASQCGSLIGKGGSKIKEIREKTGAQVQV 124
>gi|74223189|dbj|BAE40731.1| unnamed protein product [Mus musculus]
Length = 394
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 60/102 (58%), Gaps = 6/102 (5%)
Query: 50 FKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE-----DGGD 104
+ ASV+VPD GPERIL+I A++E +++++++P L+E Q + D +
Sbjct: 3 YNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVE 62
Query: 105 GYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRD 146
N G D ++RL++HQS AG IIG G KIKELR+
Sbjct: 63 CLNYQHYKG-SDFDCELRLLIHQSLAGGIIGVKGAKIKELRE 103
Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP +R++
Sbjct: 65 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVV 124
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + +++E + LD I + KGR
Sbjct: 125 LIGGKPD---RLVECIKIILDLISESPIKGRA 153
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 315 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 368
>gi|358252903|dbj|GAA50475.1| poly(rC)-binding protein 2/3/4 [Clonorchis sinensis]
Length = 859
Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 29/124 (23%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
+RLL+ + GS+IGK G N+ + R + A + + D PERI+TI E++
Sbjct: 202 VRLLMSGKEVGSIIGKRGENVKKYREESGARINISDGSSPERIVTITG-------TTEQI 254
Query: 83 LPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
A + QK+ +DD+ L+ +Q G IIGKGG++IK
Sbjct: 255 SVAFTLMSQKF----------------------EDDFTQGLLRMATQCGSIIGKGGSRIK 292
Query: 143 ELRD 146
E+R+
Sbjct: 293 EVRE 296
>gi|345311367|ref|XP_001520914.2| PREDICTED: poly(rC)-binding protein 4-like [Ornithorhynchus
anatinus]
Length = 447
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 62/130 (47%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ LR+L+ + GS+IGK G + R+R A +T+ + PERI TI +
Sbjct: 17 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTGAVFHAVS 76
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
+ LD ED G G G + K +RL++ SQ G +IGK G K
Sbjct: 77 MIAFKLD------------EDLCTGPPNG--GSVSKPPVTLRLVIPASQCGSLIGKAGAK 122
Query: 141 IKELRDTFDA 150
IKE+R++ A
Sbjct: 123 IKEIRESTGA 132
>gi|308486259|ref|XP_003105327.1| hypothetical protein CRE_21277 [Caenorhabditis remanei]
gi|308256835|gb|EFP00788.1| hypothetical protein CRE_21277 [Caenorhabditis remanei]
Length = 441
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 74/145 (51%), Gaps = 16/145 (11%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVP----DCPG-PE 63
++F + G + + +++LIPS G++IGKGG + L+ND V + PG E
Sbjct: 31 AHFGQEEEGGDHLSIKILIPSSAVGAIIGKGGEAMRNLKNDNNCRVQMSKNSETYPGTSE 90
Query: 64 RILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRL 123
RI + L N + VIE + D+IR+K + G D D N +I++
Sbjct: 91 RICLVKGRLNNIMAVIESI---QDKIREKCAD-QAGNDAFDHKNTS-------RGNEIKI 139
Query: 124 IVHQSQAGCIIGKGGTKIKELRDTF 148
++ + AG +IGK G IK++R+ F
Sbjct: 140 VMPNTSAGMVIGKSGANIKDIREQF 164
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 12/73 (16%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP-------ERILTIFAE--- 71
E+++++P+ AG VIGK G+NI +R F + V G ER++T+ E
Sbjct: 136 EIKIVMPNTSAGMVIGKSGANIKDIREQFGCQIQVYPKAGSVEAKTSLERVVTVAHEESA 195
Query: 72 --LENGLKVIEEV 82
L+ +V+E+V
Sbjct: 196 ALLQAASRVLEKV 208
>gi|405977635|gb|EKC42074.1| Poly(rC)-binding protein 3 [Crassostrea gigas]
Length = 439
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 63/130 (48%), Gaps = 18/130 (13%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +R+++ + GS+IGK G NI + R D A + + D PERI+T+ E K
Sbjct: 12 LTVRMIMQGKEVGSIIGKKGDNIKKFREDSGAKINISDGSCPERIVTVTGTTECIHKAFT 71
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
+ +E D N V K +RL+V SQ G +IGKGG+K
Sbjct: 72 MICKKFEE---------------DLQNTPTV---PKPPVTLRLVVPASQCGSLIGKGGSK 113
Query: 141 IKELRDTFDA 150
IKE+R+T A
Sbjct: 114 IKEIRETTGA 123
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 4 FIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
F + L N P V LRL++P+ GS+IGKGGS I +R AS+ V
Sbjct: 77 FEEDLQNTPTVPKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRETTGASIQV 127
>gi|348537598|ref|XP_003456280.1| PREDICTED: poly(rC)-binding protein 4-like [Oreochromis niloticus]
Length = 593
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 14/128 (10%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
LRLL+ + GS+IGK G + R+R + A + + + PERI+TI + + +
Sbjct: 130 LRLLMHGKEVGSIIGKKGETVKRIREESSARINISEGSCPERIITITGPTDCVFRAFTMI 189
Query: 83 LPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
L+ ED G V K +RL++ SQ G +IGKGG+KIK
Sbjct: 190 TFKLE------------EDLMALVANGTV--TSKPPVTLRLVIPASQCGSLIGKGGSKIK 235
Query: 143 ELRDTFDA 150
E+R+T A
Sbjct: 236 EIRETTGA 243
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 19/36 (52%), Positives = 23/36 (63%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
V LRL+IP+ GS+IGKGGS I +R A V V
Sbjct: 212 VTLRLVIPASQCGSLIGKGGSKIKEIRETTGAQVQV 247
>gi|256079872|ref|XP_002576208.1| rna-binding protein related [Schistosoma mansoni]
gi|353231011|emb|CCD77429.1| rna-binding protein related [Schistosoma mansoni]
Length = 666
Score = 62.4 bits (150), Expect = 7e-08, Method: Composition-based stats.
Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 16/146 (10%)
Query: 7 QLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG- 61
++S+ + +V ++L+PS AG++IGKGG I ++N A V + PG
Sbjct: 29 KISDTITLKPAKGNVHFKILVPSIAAGAIIGKGGEAITEIQNQTSAKVKMSKANAFYPGT 88
Query: 62 PERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDI 121
ER+ I +E+ L+V + + + E + K G +G L + +
Sbjct: 89 TERVCLIVGTIESILRVFQYISEKIYEKPESVPK-----TGCEGRV------LTERHKQV 137
Query: 122 RLIVHQSQAGCIIGKGGTKIKELRDT 147
+++V S AG IIGKGG+ IKEL+DT
Sbjct: 138 KILVPNSTAGMIIGKGGSFIKELKDT 163
>gi|341893250|gb|EGT49185.1| hypothetical protein CAEBREN_32371 [Caenorhabditis brenneri]
Length = 430
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 74/145 (51%), Gaps = 16/145 (11%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVP----DCPG-PE 63
++F + G + + +++LIPS G++IGKGG + L+ND V + PG E
Sbjct: 31 AHFGQEEEGGDHLSIKILIPSNAVGAIIGKGGEAMRNLKNDNNCRVQMSKNSETYPGTSE 90
Query: 64 RILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRL 123
RI + L N + VIE + D+IR+K + G D D N +I++
Sbjct: 91 RICLVKGRLNNIMAVIESI---QDKIREKCAD-QAGNDAFDHKNTS-------RGSEIKI 139
Query: 124 IVHQSQAGCIIGKGGTKIKELRDTF 148
++ + AG +IGK G IK++R+ F
Sbjct: 140 VMPNTSAGMVIGKSGANIKDIREHF 164
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 12/73 (16%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP-------ERILTIFAE--- 71
E+++++P+ AG VIGK G+NI +R F + V G ER++T+ E
Sbjct: 136 EIKIVMPNTSAGMVIGKSGANIKDIREHFSCQIQVYPKAGSVEAKTSLERVVTVAHEESQ 195
Query: 72 --LENGLKVIEEV 82
L+ +V+E+V
Sbjct: 196 ALLQAASRVLEKV 208
>gi|357621941|gb|EHJ73587.1| hypothetical protein KGM_22691 [Danaus plexippus]
Length = 431
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 15/114 (13%)
Query: 33 GSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEIRQK 92
GS+IGK G + R R + A + + D PERI+T+ + K + +E +
Sbjct: 7 GSIIGKKGEIVKRFREESGAKINISDGSCPERIVTVTGNTSSIFKAFTLICKKFEEWCSQ 66
Query: 93 YGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRD 146
+ +G GG + +RLIV SQ G +IGKGG+KIKE+RD
Sbjct: 67 FNEGGGGS---------------RAPITLRLIVPASQCGSLIGKGGSKIKEIRD 105
>gi|427797377|gb|JAA64140.1| Putative polyc-binding hnrnp-k protein hrb57a/hnrnp, partial
[Rhipicephalus pulchellus]
Length = 303
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 57/100 (57%), Gaps = 19/100 (19%)
Query: 56 VPDCPGP-----ERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGG 110
VP CPG RIL+I A+L+ +++ ++P LD+ ++ + G NGG
Sbjct: 37 VPSCPGCCPSCDPRILSIVADLDTLGEILLNIIPKLDDRSMQFAQH-------TGQNGG- 88
Query: 111 VGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
+ ++RL++HQS AGCIIG+ G +IKELR++ A
Sbjct: 89 ------SESEMRLLMHQSHAGCIIGRAGCRIKELRESTGA 122
>gi|348503027|ref|XP_003439068.1| PREDICTED: poly(rC)-binding protein 4-like [Oreochromis niloticus]
Length = 446
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ LRLL+ + GS+IGK G + R+R + A V + + PERI+TI ++ +
Sbjct: 16 LTLRLLMHGKEVGSIIGKKGETVKRIREESSARVNISEGSCPERIITITGSTDSVFRAFT 75
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
+ L+ ED G + K +RL++ SQ G +IGKGG K
Sbjct: 76 MITYKLE------------EDLTALVANGTIS--SKPPVTLRLVIPASQCGSLIGKGGAK 121
Query: 141 IKELRDTFDA 150
IKE+R++ A
Sbjct: 122 IKEIRESTGA 131
>gi|189234912|ref|XP_969611.2| PREDICTED: similar to AGAP004942-PA [Tribolium castaneum]
Length = 446
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 15/130 (11%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RL++ + GS+IGK G + R R + A + + D PERI+T+ K
Sbjct: 17 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSCPERIVTVTGSTNAIFKAFT 76
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
+ +E + N GG G+ + +RLIV SQ G +IGKGG+K
Sbjct: 77 LICKKFEEFQD--------------INSGG-SGVPRPPITLRLIVPASQCGSLIGKGGSK 121
Query: 141 IKELRDTFDA 150
IKE+R+ A
Sbjct: 122 IKEIREVTGA 131
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTI 68
+ LRL++P+ GS+IGKGGS I +R AS+ V P ER +TI
Sbjct: 100 ITLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQVASEMLPNSTERAVTI 150
>gi|308081899|ref|NP_001183640.1| uncharacterized protein LOC100502234 [Zea mays]
gi|238013618|gb|ACR37844.1| unknown [Zea mays]
gi|414867002|tpg|DAA45559.1| TPA: hypothetical protein ZEAMMB73_773291 [Zea mays]
gi|414867003|tpg|DAA45560.1| TPA: hypothetical protein ZEAMMB73_773291 [Zea mays]
gi|414867004|tpg|DAA45561.1| TPA: hypothetical protein ZEAMMB73_773291 [Zea mays]
Length = 541
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 72/146 (49%), Gaps = 28/146 (19%)
Query: 14 FRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASV----TVPDCPGPERILTIF 69
+ GP+D R L SR GS+IG+GG +LR + +A + +VP C ER++TIF
Sbjct: 31 YAPGPDDTVYRYLCASRKIGSIIGRGGEIAKQLRTETQAKIRIGESVPGC--DERVVTIF 88
Query: 70 AELENGLKV---IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYD------ 120
+ + +EV PA D + + + + E GLG +D +
Sbjct: 89 STSRKTNTIDGAEDEVCPAQDALFRVHERLASDE------------GLGNEDSEEISPQV 136
Query: 121 -IRLIVHQSQAGCIIGKGGTKIKELR 145
+RL+V Q GCIIGKGG I+ +R
Sbjct: 137 TVRLLVPSDQIGCIIGKGGQIIQGIR 162
>gi|327275209|ref|XP_003222366.1| PREDICTED: poly(rC)-binding protein 3-like [Anolis carolinensis]
Length = 461
Score = 62.0 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 15/136 (11%)
Query: 16 GGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELEN 74
GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 11 GGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGSCPERIVTITGP--- 67
Query: 75 GLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCII 134
+ + A I K+ ED V K +RL++ SQ G +I
Sbjct: 68 ----TDAIFKAFSMIALKF-----EEDINASMTNSTV--TSKPPVTLRLVIPASQCGSLI 116
Query: 135 GKGGTKIKELRDTFDA 150
GKGG+KIKE+R++ A
Sbjct: 117 GKGGSKIKEIRESTGA 132
Score = 39.3 bits (90), Expect = 0.49, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFAELENGLK 77
V LRL+IP+ GS+IGKGGS I +R A V V P ER +TI + ++
Sbjct: 101 VTLRLVIPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQ 160
Query: 78 VIEEV 82
++++
Sbjct: 161 CVKQI 165
>gi|134026176|gb|AAI35317.1| LOC733863 protein [Xenopus (Silurana) tropicalis]
Length = 475
Score = 61.6 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 15/136 (11%)
Query: 16 GGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELEN 74
GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 11 GGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGSCPERIVTITGP--- 67
Query: 75 GLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCII 134
+ + A I K+ ED V K +RL+V SQ G +I
Sbjct: 68 ----TDAIFKAFSMIALKFE-----EDINASMTNSTV--TSKPPVTLRLVVPASQCGSLI 116
Query: 135 GKGGTKIKELRDTFDA 150
GKGG+KIKE+R++ A
Sbjct: 117 GKGGSKIKEIRESTGA 132
Score = 38.5 bits (88), Expect = 0.93, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFAELENGLK 77
V LRL++P+ GS+IGKGGS I +R A V V P ER +TI + ++
Sbjct: 101 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQ 160
Query: 78 VIEEV 82
++++
Sbjct: 161 CVKQI 165
>gi|148674924|gb|EDL06871.1| mCG121849, isoform CRA_b [Mus musculus]
Length = 178
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 66/143 (46%), Gaps = 43/143 (30%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ AS+ +
Sbjct: 9 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASLPLES------ 62
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLI 124
A++ + ++ KG D ++RL+
Sbjct: 63 -------------------DAVECLNYQHYKGSDF------------------DCELRLL 85
Query: 125 VHQSQAGCIIGKGGTKIKELRDT 147
+HQS AG IIG G KIKELR+
Sbjct: 86 IHQSLAGGIIGVKGAKIKELREN 108
Score = 42.4 bits (98), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV--PDCPGPERILT 67
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP +
Sbjct: 69 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTVRVV 128
Query: 68 IFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
+ N +V+E + LD I + KGR
Sbjct: 129 LIGGKPN--RVVECIKIILDLISESPIKGRA 157
>gi|321475563|gb|EFX86525.1| hypothetical protein DAPPUDRAFT_307836 [Daphnia pulex]
Length = 364
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 70/141 (49%), Gaps = 20/141 (14%)
Query: 15 RGGPND-----VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIF 69
+G P+D + +RLL+ + GS+IGK G + R R + A + + D PERI+TI
Sbjct: 7 KGLPHDAPSVTLTIRLLMAGKEVGSIIGKKGEIVKRFREESGARINISDGSCPERIVTIT 66
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
+ + A + I +K + GG G + + +RLI+ SQ
Sbjct: 67 G-------TTDAIFKAFNLICKKLEEEVGGPLAGT--------AIPRPPITLRLIMPASQ 111
Query: 130 AGCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R+ A
Sbjct: 112 CGSLIGKGGSKIKEIREITGA 132
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
+ LRL++P+ GS+IGKGGS I +R ASV V
Sbjct: 101 ITLRLIMPASQCGSLIGKGGSKIKEIREITGASVVV 136
>gi|291237680|ref|XP_002738761.1| PREDICTED: poly(rC) binding protein 2-like [Saccoglossus
kowalevskii]
Length = 409
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ +RL++ + GS+IGKGG I + R A + + D ERI+T+
Sbjct: 18 TLTIRLIMQGKEVGSIIGKGGETIKKFREQSGARINISDSSCAERIVTVTGS-------T 70
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
E + A + I +K+ + D N K +RL+V SQ G +IGKGG+
Sbjct: 71 EAINNAFEMITKKFEE--------DVSNNMANSSTPKPPVTLRLVVPASQCGSLIGKGGS 122
Query: 140 KIKELRD 146
KIKE+R+
Sbjct: 123 KIKEIRE 129
Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 4 FIQQLSNFKRFRGGPND-VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
F + +SN P V LRL++P+ GS+IGKGGS I +R + ASV V
Sbjct: 84 FEEDVSNNMANSSTPKPPVTLRLVVPASQCGSLIGKGGSKIKEIRENTGASVQV 137
>gi|410899813|ref|XP_003963391.1| PREDICTED: poly(rC)-binding protein 4-like [Takifugu rubripes]
Length = 447
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LRLL+ + GS+IGK G + R+R + A V + + PERI+TI + +
Sbjct: 15 TLTLRLLMHGKEVGSIIGKKGETVKRIREESSARVNISEGSCPERIITITGSTDCVFRAF 74
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ L+ ED G + K +RL++ SQ G +IGKGG
Sbjct: 75 TMITHKLE------------EDLAALVANGTIS--TKPPVTLRLVIPASQCGSLIGKGGA 120
Query: 140 KIKELRDTFDA 150
KIKE+R++ A
Sbjct: 121 KIKEIRESTGA 131
Score = 35.0 bits (79), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
V LRL+IP+ GS+IGKGG+ I +R A + V
Sbjct: 100 VTLRLVIPASQCGSLIGKGGAKIKEIRESTGAQIQV 135
>gi|357607077|gb|EHJ65347.1| hypothetical protein KGM_03835 [Danaus plexippus]
Length = 206
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 15/83 (18%)
Query: 65 ILTIFA-ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRL 123
+L+I A +++ +++++E+LP L + G G G + GG DD D+RL
Sbjct: 129 VLSITASDIDTIMEIVKEILPNLAD---ASGPGSGTKHGG-----------SSDDLDVRL 174
Query: 124 IVHQSQAGCIIGKGGTKIKELRD 146
++HQS+AGC+IGK G KIKELR+
Sbjct: 175 LIHQSRAGCVIGKAGAKIKELRE 197
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 32/42 (76%), Gaps = 3/42 (7%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP 60
+D E+ LIPS+VAGS+IGKGG+NI++LRN+ VT CP
Sbjct: 19 SDDEVTFLIPSKVAGSIIGKGGANISKLRNE---PVTGSYCP 57
>gi|297814608|ref|XP_002875187.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321025|gb|EFH51446.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 469
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 75/140 (53%), Gaps = 5/140 (3%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PG-PERILTIFAELE 73
G D R L P R AGS+IG+GG ++R++ KA++ + + PG ER++TI++ E
Sbjct: 13 AGLEDTVYRYLCPVRKAGSIIGRGGEIAKQIRSETKANMRINEALPGCDERVVTIYSNSE 72
Query: 74 NGLKVIEE---VLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
++ ++ V PA D + + + E DG G + +R++V Q
Sbjct: 73 ETNRIEDDEDFVCPAFDALFKVHDMIVAEEFDNDGDYDNGDEYSERQTVTVRMLVPSDQI 132
Query: 131 GCIIGKGGTKIKELRDTFDA 150
GC+IGKGG I++LR+ +A
Sbjct: 133 GCLIGKGGQVIQKLRNDTNA 152
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 54/136 (39%), Gaps = 32/136 (23%)
Query: 25 LLIPSRVAGSVIGKGGSNIARLRNDFKASVTVP--------DCPGPERILTIFAE--LEN 74
+ P+ G VIGKGG I + R + A++ V DC I+ I A+ E+
Sbjct: 248 FICPAENVGGVIGKGGCFINQTRQESGATIKVHTPETDEDDDC-----IIFISAKEFFED 302
Query: 75 GLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCII 134
+ L +K GK D D R+++ SQ GC+I
Sbjct: 303 QSPTVNAALRLQTRCSEKVGK-----DSSDSA------------ISTRVLIPSSQVGCLI 345
Query: 135 GKGGTKIKELRDTFDA 150
GKGG I E+R A
Sbjct: 346 GKGGALISEMRSVTKA 361
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
V +R+L+PS G +IGKGG I +LRND A + V
Sbjct: 121 VTVRMLVPSDQIGCLIGKGGQVIQKLRNDTNAQIRV 156
Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV---PDCP----GPERILTIFAELE 73
+ R+LIPS G +IGKGG+ I+ +R+ KA++ + D P E ++ I L+
Sbjct: 330 ISTRVLIPSSQVGCLIGKGGALISEMRSVTKANIRIFQGEDVPRIARENEEMVQITGSLD 389
Query: 74 NGLKVIEEVL 83
+K + +V+
Sbjct: 390 AAIKALTQVM 399
>gi|268562247|ref|XP_002638547.1| Hypothetical protein CBG05583 [Caenorhabditis briggsae]
Length = 399
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 73/145 (50%), Gaps = 16/145 (11%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVP----DCPG-PE 63
++F + G + + +++LIPS G++IGKGG + L+ D V + PG E
Sbjct: 29 AHFGQEEEGGDHLSIKILIPSSAVGAIIGKGGEAMRNLKTDNNCRVQMSKNSETYPGTSE 88
Query: 64 RILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRL 123
RI + L N + VIE + D+IR+K + G D D N +I++
Sbjct: 89 RICLVKGRLNNIMSVIESI---QDKIREKCAD-QAGSDAFDHKN-------TSRGNEIKI 137
Query: 124 IVHQSQAGCIIGKGGTKIKELRDTF 148
++ + AG +IGK G IK++R+ F
Sbjct: 138 VMPNTSAGMVIGKSGANIKDIREQF 162
Score = 36.2 bits (82), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 12/73 (16%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP-------ERILTIF----- 69
E+++++P+ AG VIGK G+NI +R F + V G ER++T+
Sbjct: 134 EIKIVMPNTSAGMVIGKSGANIKDIREQFGCQIQVYPKAGSVEAKTSLERVVTVAHDESG 193
Query: 70 AELENGLKVIEEV 82
A L+ +V+E+V
Sbjct: 194 ALLQAASRVLEKV 206
>gi|359489188|ref|XP_002272998.2| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
vinifera]
Length = 343
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 69/138 (50%), Gaps = 5/138 (3%)
Query: 13 RFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
+ R DV R+++PSR G VIGK GS I ++R + KA++ + D I
Sbjct: 52 KRRAKNQDVLFRIVVPSRQIGKVIGKEGSRIQKIREETKATIKIADAIARHEERVIIISS 111
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
++ VI + AL ++ K +D GVG + + IRL++ SQAGC
Sbjct: 112 KDSENVISDAENALLQVASLILK---EDDSNTDALKVGVGHVVAN--AIRLLIAGSQAGC 166
Query: 133 IIGKGGTKIKELRDTFDA 150
+IG G I++LR++ A
Sbjct: 167 LIGMSGQNIEKLRNSSGA 184
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 11/135 (8%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV------PDCPG---PERILTIFAELE 73
+RLLI AG +IG G NI +LRN A++T+ P C +R++ I ++
Sbjct: 155 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATITILPQNQLPLCASAHDSDRMVQISGDVP 214
Query: 74 NGLKVIEEVLPALDE--IRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAG 131
LK +EE+ L E RQ + + + D + +++ ++ G
Sbjct: 215 AVLKALEEIGCQLRENPPRQVISISPIYNPNTNRTSQQYLDPASADYVTLNMMIPETLVG 274
Query: 132 CIIGKGGTKIKELRD 146
+IG+ G+ I +R+
Sbjct: 275 GLIGRCGSNISRIRN 289
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
V L ++IP + G +IG+ GSNI+R+RN+ A + V
Sbjct: 262 VTLNMMIPETLVGGLIGRCGSNISRIRNESGAMIKV 297
>gi|297734587|emb|CBI16638.3| unnamed protein product [Vitis vinifera]
Length = 346
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 69/138 (50%), Gaps = 5/138 (3%)
Query: 13 RFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
+ R DV R+++PSR G VIGK GS I ++R + KA++ + D I
Sbjct: 52 KRRAKNQDVLFRIVVPSRQIGKVIGKEGSRIQKIREETKATIKIADAIARHEERVIIISS 111
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
++ VI + AL ++ K +D GVG + + IRL++ SQAGC
Sbjct: 112 KDSENVISDAENALLQVASLILK---EDDSNTDALKVGVGHVVAN--AIRLLIAGSQAGC 166
Query: 133 IIGKGGTKIKELRDTFDA 150
+IG G I++LR++ A
Sbjct: 167 LIGMSGQNIEKLRNSSGA 184
Score = 39.7 bits (91), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 11/135 (8%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV------PDCPG---PERILTIFAELE 73
+RLLI AG +IG G NI +LRN A++T+ P C +R++ I ++
Sbjct: 155 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATITILPQNQLPLCASAHDSDRMVQISGDVP 214
Query: 74 NGLKVIEEVLPALDE--IRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAG 131
LK +EE+ L E RQ + + + D + +++ ++ G
Sbjct: 215 AVLKALEEIGCQLRENPPRQVISISPIYNPNTNRTSQQYLDPASADYVTLNMMIPETLVG 274
Query: 132 CIIGKGGTKIKELRD 146
+IG+ G+ I +R+
Sbjct: 275 GLIGRCGSNISRIRN 289
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
V L ++IP + G +IG+ GSNI+R+RN+ A + V
Sbjct: 262 VTLNMMIPETLVGGLIGRCGSNISRIRNESGAMIKV 297
>gi|33150676|gb|AAP97216.1|AF092441_1 CBP [Homo sapiens]
Length = 397
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 14/131 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ LR+L+ + GS+IGK G + R+R A +T+ + ERI TI +
Sbjct: 17 TLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSFLERITTITGSTAAVFHAV 76
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ LDE + NGG V + +RL++ SQ G +IG+ GT
Sbjct: 77 SMIAFKLDE-----------DLCAAPANGGNVS---RPPVTLRLVIPASQCGSLIGQAGT 122
Query: 140 KIKELRDTFDA 150
KIKE+R+T A
Sbjct: 123 KIKEIRETTGA 133
>gi|449265657|gb|EMC76819.1| Poly(rC)-binding protein 3 [Columba livia]
Length = 343
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 68/140 (48%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 7 KATEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGSCPERIVTITG 66
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED V K +RL+V SQ
Sbjct: 67 PTDAIFK-------AFSMIALKFE-----EDINASMTNSTV--TSKPPVTLRLVVPASQC 112
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 113 GSLIGKGGSKIKEIRESTGA 132
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 101 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 136
>gi|410900025|ref|XP_003963497.1| PREDICTED: poly(rC)-binding protein 2-like [Takifugu rubripes]
Length = 318
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 VEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
+ K ++ L+E D K IRL+V SQ G
Sbjct: 66 TSIFKAFSMIIEKLEE------------DISTSMTNST--ATSKPPVTIRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESAGA 129
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 68/173 (39%), Gaps = 49/173 (28%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V +RL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTIRLVVPASQCGSLIGKGGCKIKEIRESAGAQVQVAGDMLPN--STERAITIAGTPQSI 155
Query: 76 LKVIEEVLPALDEIRQK-----YGKGRGGED----GGDGYNGGGVGGLGKDD----YDIR 122
++ ++++ + E K Y G GG Y G + + D + +
Sbjct: 156 IECVKQICVVMLESPPKGVTIPYRPKPSGSPVIFAGGQAYAVQGQHAIPQPDLTKLHQLA 215
Query: 123 L------IVHQSQA-----------------------GCIIGKGGTKIKELRD 146
+ I H +Q GCIIG+ G KI E+R
Sbjct: 216 MQQSPFPIAHSNQGFQAGMDASAQTGSHELTIPNDLIGCIIGRQGAKINEIRQ 268
>gi|413933627|gb|AFW68178.1| nucleic acid binding protein [Zea mays]
Length = 637
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 10/137 (7%)
Query: 13 RFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--PERILTIFA 70
++ G P + R+L+P++ G++IG+ G I ++ + KA + + D P PER + I A
Sbjct: 223 KWPGWPGESVFRILVPAQKVGAIIGRKGEFIKKMCEETKARIKILDGPPGVPERAVMISA 282
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ E + PA+D + + + + DG G +G RL+V SQA
Sbjct: 283 KDEPD----APLSPAMDGLLRVHKRITDSSDGESSQPQRSAGNIGP----TRLLVPSSQA 334
Query: 131 GCIIGKGGTKIKELRDT 147
G +IGK G IK ++D+
Sbjct: 335 GSLIGKQGATIKSIQDS 351
>gi|449493846|ref|XP_002188887.2| PREDICTED: poly(rC)-binding protein 3-like [Taeniopygia guttata]
Length = 352
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 68/140 (48%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 7 KVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGTCPERIVTITG 66
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED V K +RL+V SQ
Sbjct: 67 PTDAIFK-------AFSMIALKFE-----EDINASMTNSSV--TSKPPVTLRLVVPASQC 112
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 113 GSLIGKGGSKIKEIRESTGA 132
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 101 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 136
>gi|242038781|ref|XP_002466785.1| hypothetical protein SORBIDRAFT_01g014200 [Sorghum bicolor]
gi|241920639|gb|EER93783.1| hypothetical protein SORBIDRAFT_01g014200 [Sorghum bicolor]
Length = 430
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 16/140 (11%)
Query: 13 RFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--PERILTIFA 70
++ G P + R+L+P++ G++IG+ G I ++ + KA + + D P PER + I A
Sbjct: 113 KWPGWPGESVFRILVPAQKVGAIIGRKGEFIKKMCEETKARIKILDGPPGVPERAVMISA 172
Query: 71 ELENGLKVIEEVLPALD---EIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQ 127
+ E + PA+D + ++ GE G + G +G RL+V
Sbjct: 173 KDEPDAP----LSPAVDGLLRVHKRITDSSNGESGQLQRSAGNIG-------PTRLLVPS 221
Query: 128 SQAGCIIGKGGTKIKELRDT 147
SQAG +IGK G IK ++D+
Sbjct: 222 SQAGSLIGKQGATIKSIQDS 241
>gi|326917277|ref|XP_003204927.1| PREDICTED: poly(rC)-binding protein 3-like [Meleagris gallopavo]
Length = 448
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 68/140 (48%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 7 KVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGSCPERIVTITG 66
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED V K +RL+V SQ
Sbjct: 67 PTDAIFK-------AFSMIALKFE-----EDINASMTNSSV--TSKPPVTLRLVVPASQC 112
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 113 GSLIGKGGSKIKEIRESTGA 132
Score = 36.2 bits (82), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 101 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 136
>gi|170027830|ref|XP_001841800.1| heterogeneous nuclear ribonucleoprotein k [Culex quinquefasciatus]
gi|167862370|gb|EDS25753.1| heterogeneous nuclear ribonucleoprotein k [Culex quinquefasciatus]
Length = 429
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 48/125 (38%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEE 81
E+RLLIPS+V + K +++ SV +TI A++E KV+++
Sbjct: 42 EVRLLIPSKV--DITSK----------NYEQSV-----------ITIGADMETVTKVVKD 78
Query: 82 VLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKI 141
++ LD+ G+++Y++R++VHQS AGC+IG+GGTKI
Sbjct: 79 IMKHLDK-------------------------AGENEYELRILVHQSLAGCVIGRGGTKI 113
Query: 142 KELRD 146
KEL+D
Sbjct: 114 KELKD 118
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 15 RGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPE---RILTIFAE 71
+ G N+ ELR+L+ +AG VIG+GG+ I L++ + + P+ RI +
Sbjct: 85 KAGENEYELRILVHQSLAGCVIGRGGTKIKELKDQIGCRLKIFSNIAPQSTDRIAQVVGT 144
Query: 72 LENGLKVIEEVL 83
+ LK + +++
Sbjct: 145 EDQCLKALNDII 156
>gi|432866565|ref|XP_004070866.1| PREDICTED: poly(rC)-binding protein 2-like [Oryzias latipes]
Length = 318
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 VEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
+ K ++ L+ ED + K +RL+V SQ G
Sbjct: 66 TSIFKAFSMIIEKLE------------EDISNSMTNS--TATSKPPVTMRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESAGA 129
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 49/173 (28%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V +RL++P+ GS+IGKGG I +R A V V P+ ER +T+ ++
Sbjct: 98 VTMRLVVPASQCGSLIGKGGCKIKEIRESAGAQVQVAGDMLPN--STERAITVAGTPQSI 155
Query: 76 LKVIEEVLPALDEIRQK-----YGKGRGGED----GGDGYNGGGVGGLGKDD----YDIR 122
++ ++++ + E K Y G GG Y G + + D + +
Sbjct: 156 IECVKQICIVMLESPPKGVTIPYRPKPSGSPVIFAGGQAYAVQGQHAIPQPDLTKLHQLA 215
Query: 123 L------IVHQSQA-----------------------GCIIGKGGTKIKELRD 146
+ I H +Q GCIIG+ G KI E+R
Sbjct: 216 MQQSPFPIAHSNQGFQAGMDASAQTGSHELTIPNDLIGCIIGRQGAKINEIRQ 268
>gi|326511144|dbj|BAJ87586.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 450
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 72/138 (52%), Gaps = 11/138 (7%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIF 69
KR+ G P D R+++P GS+IG+ G I RL + KA V V + P ERI+ +
Sbjct: 42 KRWPGWPGDNVFRMVVPVLKVGSIIGRKGELIKRLVEETKARVRVLEGPVGATERIVLVS 101
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDG-GDGYNGGGVGGLGKDDYDIRLIVHQS 128
A+ + GL E+ PA+D + + + + G DG +G G+ RL+V +
Sbjct: 102 AKEDPGL----ELPPAMDALIRVFKRVNGISDGAAEGTQTSAAPGVCA----ARLVVPGA 153
Query: 129 QAGCIIGKGGTKIKELRD 146
QA +IGK G IK +++
Sbjct: 154 QAINLIGKQGASIKAIQE 171
>gi|168013158|ref|XP_001759268.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689581|gb|EDQ75952.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 427
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 15/131 (11%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PGPERILTIFAELEN 74
G N++ RLL PS GSVIGKGGS I LR D A + + + PG + + I + LE
Sbjct: 255 SGENELVFRLLCPSDKIGSVIGKGGSIIHNLRKDTGARIKIANAVPGSDERVIIVSALEL 314
Query: 75 GLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCII 134
L A+ +++ + GG+ G RL+V +Q GC++
Sbjct: 315 PGDSFSPALEAMIQVQSRITAEMGGDKDG--------------IITTRLLVPTNQIGCLL 360
Query: 135 GKGGTKIKELR 145
GKGG+ I+++R
Sbjct: 361 GKGGSIIEDMR 371
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 9/140 (6%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PGPERILTIFAELENGLK 77
+DV R+L P+ GSVIGKGGS I LR + A + + D PG + + + + + G
Sbjct: 1 DDVVFRILCPAPKIGSVIGKGGSIIKTLRQESGAKIKIADAIPGVDERVILISSTDRGND 60
Query: 78 V-------IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
EE+ PA + + + + + + G +G RL+V +Q
Sbjct: 61 RGRGKDGNSEELTPAQEALFKVHARIIADVETS-GIDGSDQEEEPSQQVVTRLLVPNNQI 119
Query: 131 GCIIGKGGTKIKELRDTFDA 150
GC++GKGG I+++R T A
Sbjct: 120 GCLLGKGGKIIEQMRQTTGA 139
Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 1 MEFFIQQLSNFKRFRGGPND--VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASV---- 54
+E IQ S GG D + RLL+P+ G ++GKGGS I +R +A++
Sbjct: 323 LEAMIQVQSRITAEMGGDKDGIITTRLLVPTNQIGCLLGKGGSIIEDMRRATRANIRVLP 382
Query: 55 --TVPDC 59
T+P C
Sbjct: 383 KDTLPRC 389
>gi|356530005|ref|XP_003533576.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 385
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 71/141 (50%), Gaps = 11/141 (7%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--PERIL 66
S KR +G DV R+++PSR G VIGK G I ++R D KA++ + D ER++
Sbjct: 92 SAAKRAKG--QDVIFRIVVPSRQIGKVIGKEGHRIQKIREDTKATIKIADAIARHEERVI 149
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVH 126
I ++ +N KV + AL++I K G V IRL++
Sbjct: 150 IISSK-DNDEKVT-DAEKALEQIAHLILKEDDSSLDASKVTAGHVAA-----NTIRLLIA 202
Query: 127 QSQAGCIIGKGGTKIKELRDT 147
SQAG +IG G I++LRD+
Sbjct: 203 GSQAGGLIGMSGQNIEKLRDS 223
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 21/140 (15%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV------PDCPG---PERILTIFAELE 73
+RLLI AG +IG G NI +LR+ AS+TV P C +R++ + ++
Sbjct: 197 IRLLIAGSQAGGLIGMSGQNIEKLRDSSGASITVLAPNQLPLCASAHESDRVVQLSGDVP 256
Query: 74 NGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGV-------GGLGKDDYDIRLIVH 126
+K +EE+ L E R YN + D +++
Sbjct: 257 AVMKALEEIGCQLRE-----NPPRQVISISPTYNYAAIRPSQPYLDPTSVDYVTFEMLIS 311
Query: 127 QSQAGCIIGKGGTKIKELRD 146
++ G +IG+ G+ I +R+
Sbjct: 312 ETMVGGLIGRCGSNISRIRN 331
>gi|118086587|ref|XP_419049.2| PREDICTED: poly(rC)-binding protein 3 [Gallus gallus]
Length = 448
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 68/140 (48%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 7 KVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGSCPERIVTITG 66
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED V K +RL+V SQ
Sbjct: 67 PTDAIFK-------AFSMIALKFE-----EDINASMTNSTV--TSKPPVTLRLVVPASQC 112
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 113 GSLIGKGGSKIKEIRESTGA 132
Score = 36.2 bits (82), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 101 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 136
>gi|147855522|emb|CAN83854.1| hypothetical protein VITISV_031103 [Vitis vinifera]
Length = 321
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 5/138 (3%)
Query: 13 RFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
+ R DV R+++PSR G VIGK GS I ++R + KA++ + D I
Sbjct: 52 KRRAKNQDVLFRIVVPSRQIGKVIGKEGSRIQKIREETKATIKIADAIARHEERVIIISS 111
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
++ VI + AL + K +D GVG + + IRL++ SQAGC
Sbjct: 112 KDSENVISDAENALLQXASLILK---EDDSNTDALKVGVGHVVAN--AIRLLIAGSQAGC 166
Query: 133 IIGKGGTKIKELRDTFDA 150
+IG G I++LR++ A
Sbjct: 167 LIGMSGQNIEKLRNSSGA 184
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 26/130 (20%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE-- 80
+RLLI AG +IG G NI +LRN A++T+ P+ L + A + ++++
Sbjct: 155 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATITIL----PQNQLPLCASAHDSDRMVQIS 210
Query: 81 ----EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGK 136
VL AL+EI + L D + +++ ++ G +IG+
Sbjct: 211 GDVPAVLKALEEIGCQL----------------RTTNLAADYVTLNMMIPETLVGGLIGR 254
Query: 137 GGTKIKELRD 146
G+ I +R+
Sbjct: 255 CGSNISRIRN 264
Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
V L ++IP + G +IG+ GSNI+R+RN+ A + V
Sbjct: 237 VTLNMMIPETLVGGLIGRCGSNISRIRNESGAMIKV 272
>gi|148223740|ref|NP_001083021.1| poly(rC)-binding protein 3 [Danio rerio]
gi|134025331|gb|AAI35089.1| Zgc:162999 protein [Danio rerio]
Length = 350
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G + ++R + A + V + PERI+TI + K
Sbjct: 16 LTIRLLMHGKEVGSIIGKKGETVKKMREESSARINVSEGNCPERIVTITGPTDAIFK--- 72
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
A I K+ ED + + K +RL+V SQ G +IGKGG+K
Sbjct: 73 ----AFAMIAYKF-----EEDIINSMSNS--QATSKPPVTLRLVVPASQCGSLIGKGGSK 121
Query: 141 IKELRDTFDA 150
IKE+R++ A
Sbjct: 122 IKEMRESTGA 131
Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV----- 56
E I +SN + P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 83 EDIINSMSNSQATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDML 140
Query: 57 PDCPGPERILTIFAELENGLKVIEEV 82
P+ ER +TI E ++ ++++
Sbjct: 141 PN--STERAVTISGTPEAIIQCVKQI 164
>gi|357157425|ref|XP_003577794.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 527
Score = 59.3 bits (142), Expect = 6e-07, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 75/147 (51%), Gaps = 14/147 (9%)
Query: 6 QQLSNF----KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG 61
+QL+N K++ G P + R+L+P + G+VIG+ G I ++ + +A + + D P
Sbjct: 107 EQLANVETEDKKWPGWPGESVFRVLVPVQKVGAVIGRKGEFIKKMCEESRARIKILDGPP 166
Query: 62 --PERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDY 119
PER + I A+ E V PA+D + + + + G D G G +G
Sbjct: 167 GVPERAVMISAKDEPD----ALVSPAVDGLLRVHKRITDGLDSETDQPQRGAGPVGP--- 219
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
RL+V SQAG +IGK G IK ++D
Sbjct: 220 -TRLLVPASQAGSLIGKQGATIKSIQD 245
>gi|255554418|ref|XP_002518248.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223542595|gb|EEF44134.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 451
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 74/138 (53%), Gaps = 12/138 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELE 73
G P D RL++P GS+IG+ G I ++ ++ +A + V D P P+R++ I
Sbjct: 56 GWPGDCVFRLIVPVLKVGSIIGRKGDLIKKMCDETRARIRVLDAPIGTPDRVVLI----- 110
Query: 74 NGLKVIEEVL-PALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
+G + +E L PA+D + + + + G +G N +G G IRL+V +QA
Sbjct: 111 SGKEDVEAPLSPAMDAVIRVFKRVSGLPEG----NAQELGAAGIAFSSIRLLVASTQAIN 166
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGK G+ IK ++++ A
Sbjct: 167 LIGKQGSIIKSIQESTGA 184
>gi|149044728|gb|EDL97914.1| rCG23179 [Rattus norvegicus]
Length = 225
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 67/143 (46%), Gaps = 43/143 (30%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VEL +L+ S+ AG+VIGKGG NI LR D+ AS+
Sbjct: 1 MEEEQAFKRSRNTDEMVELHILLQSKNAGAVIGKGGKNIKALRTDYNASLP--------- 51
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLI 124
LE+ A++ + ++ KG D ++RL+
Sbjct: 52 -------LESD---------AVECLNYQHYKG------------------SDFDCELRLL 77
Query: 125 VHQSQAGCIIGKGGTKIKELRDT 147
+HQS AG IIG G KIKELR+
Sbjct: 78 IHQSLAGGIIGVKGAKIKELREN 100
Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP +R++
Sbjct: 61 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVV 120
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
I + + +V+E + LD I + KGR
Sbjct: 121 LIGGKPD---RVVECIKIILDLISESPIKGRA 149
>gi|255541092|ref|XP_002511610.1| conserved hypothetical protein [Ricinus communis]
gi|223548790|gb|EEF50279.1| conserved hypothetical protein [Ricinus communis]
Length = 363
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 69/143 (48%), Gaps = 24/143 (16%)
Query: 15 RGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--PERILTI---- 68
R DV R+++PSR G VIGK G I ++R + KA++ + D ER++ I
Sbjct: 65 RAKAQDVIFRIVVPSRQIGKVIGKVGCRIQKIREETKATIKIADAIARHEERVIIISSKE 124
Query: 69 ----FAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLI 124
++ EN LK I ++ D E + G G LG + IRL+
Sbjct: 125 SDCVVSDAENALKKIATLILKED------------ESPAESSKVVGAGHLGAN--TIRLL 170
Query: 125 VHQSQAGCIIGKGGTKIKELRDT 147
+ SQAG +IG G I++LR++
Sbjct: 171 IAGSQAGSLIGVSGQNIEKLRNS 193
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 27/143 (18%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV------PDCPGP---ERILTIFAELE 73
+RLLI AGS+IG G NI +LRN A++TV P C +R++ I ++
Sbjct: 167 IRLLIAGSQAGSLIGVSGQNIEKLRNSSGATITVLAPNQLPLCASAHESDRVVQISGDVP 226
Query: 74 NGLKVIEEVLPALDEIRQK----------YGKGRGGEDGGDGYNGGGVGGLGKDDYDIRL 123
LK +EE+ L E K Y R + D + D + +
Sbjct: 227 VVLKAVEEIGCQLRENPPKQVISISPTYNYATVRPTQPYVDPTSA--------DYVTLEM 278
Query: 124 IVHQSQAGCIIGKGGTKIKELRD 146
+V ++ G +IG+ G+ I +R+
Sbjct: 279 MVSETLVGGLIGRCGSNISRIRN 301
>gi|348502908|ref|XP_003439009.1| PREDICTED: poly(rC)-binding protein 2-like [Oreochromis niloticus]
Length = 324
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 VEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
+ K ++ L+E D K +RL+V SQ G
Sbjct: 66 TSIFKAFSMIIEKLEE------------DISTSMTNST--ATSKPPVTMRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESAGA 129
Score = 35.4 bits (80), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 68/179 (37%), Gaps = 55/179 (30%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V +RL++P+ GS+IGKGG I +R A V V P+ ER +T+ ++
Sbjct: 98 VTMRLVVPASQCGSLIGKGGCKIKEIRESAGAQVQVAGDMLPN--STERAITVAGTPQSI 155
Query: 76 LKVIEEVLPALDEIRQK-----YGKGRGGED----GGDGYNGGGVGGLGKDD-------- 118
++ ++++ + E K Y G GG Y G + + D
Sbjct: 156 IECVKQICIVMLESPPKGVTIPYRPKPSGSPVIFAGGQAYAVQGQHAIPQPDVSEGPSLT 215
Query: 119 --YDIRL------IVHQSQA-----------------------GCIIGKGGTKIKELRD 146
+ + + I H +Q GCIIG+ G KI E+R
Sbjct: 216 KLHQLAMQQSPFPIAHSNQGFQAGMDASAQTGSHELTIPNDLIGCIIGRQGAKINEIRQ 274
>gi|348518109|ref|XP_003446574.1| PREDICTED: poly(rC)-binding protein 3-like [Oreochromis niloticus]
Length = 349
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G + ++R D A + + + PERI+TI + K
Sbjct: 16 LTIRLLMHGKEVGSIIGKKGETVKKMREDSGARINISEGNCPERIVTITGPTDAIFK--- 72
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
A I K+ ED + + K +RL+V SQ G +IGKGG+K
Sbjct: 73 ----AFAMIAYKF-----EEDIINSMSNS--PATSKPPVTLRLVVPASQCGSLIGKGGSK 121
Query: 141 IKELRDTFDA 150
IKE+R++ A
Sbjct: 122 IKEMRESTGA 131
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV----- 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 83 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDML 140
Query: 57 PDCPGPERILTIFAELENGLKVIEEVLPALDE 88
P+ ER +TI E ++ ++++ L E
Sbjct: 141 PN--STERAVTISGAPEAIIQCVKQICVVLLE 170
>gi|225452863|ref|XP_002283766.1| PREDICTED: KH domain-containing protein At4g18375 [Vitis vinifera]
gi|296082939|emb|CBI22240.3| unnamed protein product [Vitis vinifera]
Length = 548
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 67/140 (47%), Gaps = 18/140 (12%)
Query: 14 FRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASV----TVPDCPGPERILTIF 69
F P D R L P R GS+IG+GG + +LR D K+ + TVP C ER++TI+
Sbjct: 36 FTIEPEDTVYRYLCPGRKIGSIIGRGGEIVKQLRVDTKSKIRIGETVPGC--EERVVTIY 93
Query: 70 AELENGLKVIEE---VLPALDEIRQKYGKGRGGE-DGGDGYNGGGVGGLGKDDYDIRLIV 125
+ + + V PA D + + + + E G D V +RL+V
Sbjct: 94 SSSDETNAFDDSDTFVSPAQDALFRVHDRVVSEEVHGEDSEEASQVT--------VRLLV 145
Query: 126 HQSQAGCIIGKGGTKIKELR 145
Q GC+IGKGG I+ +R
Sbjct: 146 PSDQIGCVIGKGGQIIQSIR 165
>gi|432112571|gb|ELK35287.1| Poly(rC)-binding protein 2 [Myotis davidii]
Length = 453
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 15/136 (11%)
Query: 16 GGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELEN 74
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 8 GGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNA 67
Query: 75 GLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCII 134
K ++ L+E D + +RL+V SQ G +I
Sbjct: 68 IFKAFAMIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGSLI 113
Query: 135 GKGGTKIKELRDTFDA 150
GKGG KIKE+R++ A
Sbjct: 114 GKGGCKIKEIRESTGA 129
Score = 36.6 bits (83), Expect = 3.6, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTI 68
V LRL++P+ GS+IGKGG I +R A V V P ER +TI
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITI 148
>gi|297262518|ref|XP_001105618.2| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Macaca mulatta]
Length = 335
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+E+ + + +RL+V SQ G
Sbjct: 66 NAIFKAFAMIIDKLEEV---FSSSMTNSTAAS-----------RPPVTLRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
Score = 38.5 bits (88), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 10/101 (9%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV----- 56
E F ++N P V LRL++P+ GS+IGKGG I +R A V V
Sbjct: 81 EVFSSSMTNSTAASRPP--VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDML 138
Query: 57 PDCPGPERILTIFAELENGLKVIEEV-LPALDEIRQKYGKG 96
P+ ER +TI ++ ++ ++++ + L+ + Q KG
Sbjct: 139 PN--STERAITIAGIPQSIIECVKQICVVMLETLSQSPPKG 177
>gi|242040159|ref|XP_002467474.1| hypothetical protein SORBIDRAFT_01g028800 [Sorghum bicolor]
gi|241921328|gb|EER94472.1| hypothetical protein SORBIDRAFT_01g028800 [Sorghum bicolor]
Length = 452
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 11/142 (7%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIF 69
KR+ G P D RL++P GS+IG+ G I RL + KA V + + P ERI+ +
Sbjct: 41 KRWPGWPGDSVFRLVVPVLKVGSIIGRKGELIKRLVEETKARVRILEGPVGATERIVLVS 100
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDG-GDGYNGGGVGGLGKDDYDIRLIVHQS 128
+ + GL E+ PA+D + + + + G DG +G G+ RL+V +
Sbjct: 101 GKEDPGL----ELPPAMDALMRVFKRVIGITDGAAEGTQAAATPGVCA----ARLLVPGA 152
Query: 129 QAGCIIGKGGTKIKELRDTFDA 150
QA +IGK G IK ++++ A
Sbjct: 153 QAINLIGKQGATIKAIQESTGA 174
>gi|322780737|gb|EFZ09994.1| hypothetical protein SINV_05815 [Solenopsis invicta]
Length = 483
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 45/141 (31%), Positives = 72/141 (51%), Gaps = 19/141 (13%)
Query: 14 FRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTI 68
F GG L++L+P AG++IGKGG IA+L+ D A V + PG ER+ I
Sbjct: 7 FVGGDGTYHLKVLVPGVAAGAIIGKGGDTIAQLQKDTGARVKMSKSHDFYPGTTERVCLI 66
Query: 69 FAELENGLKVIEEVLPALDEIRQK---YGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIV 125
++ ++V+E + +D+IR+K K D G + D ++++V
Sbjct: 67 TGTVDAIMEVMEFI---MDKIREKPDLTSKTTVDFDSGK--------ATAERDKQVKILV 115
Query: 126 HQSQAGCIIGKGGTKIKELRD 146
S AG IIGK G IK++++
Sbjct: 116 PNSTAGMIIGKAGNYIKQIKE 136
Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVP----DCPGPERILTIFAELENG 75
D ++++L+P+ AG +IGK G+ I +++ + + V + D ER +T+ E EN
Sbjct: 108 DKQVKILVPNSTAGMIIGKAGNYIKQIKEESGSYVQISQKAKDLSLQERCITVIGEKENN 167
Query: 76 LKVIEEVL 83
+ + +L
Sbjct: 168 HRALHMIL 175
>gi|326922311|ref|XP_003207393.1| PREDICTED: poly(rC)-binding protein 3-like [Meleagris gallopavo]
Length = 313
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 4 KVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITG 63
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ + A I K+ ED + + K +RL+V SQ
Sbjct: 64 P-------TDAIFKAFAMIAYKFE-----EDITNSMSNST--ATSKPPVTLRLVVPASQC 109
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 110 GSLIGKGGSKIKEIRESTGA 129
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 81 EDITNSMSNSTATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
>gi|397521979|ref|XP_003846057.1| PREDICTED: LOW QUALITY PROTEIN: poly(rC)-binding protein 2 [Pan
paniscus]
Length = 465
Score = 58.9 bits (141), Expect = 8e-07, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 15/136 (11%)
Query: 16 GGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELEN 74
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 8 GGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNA 67
Query: 75 GLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCII 134
K ++ L+E D + +RL+V SQ G +I
Sbjct: 68 IFKAFAMIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGSLI 113
Query: 135 GKGGTKIKELRDTFDA 150
GKGG KIKE+R++ A
Sbjct: 114 GKGGCKIKEIRESTGA 129
Score = 36.6 bits (83), Expect = 3.9, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTI 68
V LRL++P+ GS+IGKGG I +R A V V P ER +TI
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITI 148
>gi|345486914|ref|XP_001607400.2| PREDICTED: poly(rC)-binding protein 3-like [Nasonia vitripennis]
Length = 476
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 44/128 (34%), Positives = 67/128 (52%), Gaps = 6/128 (4%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
+RL++ + GS+IGK G + R R + A + + D PERI+T+ + K +
Sbjct: 22 IRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSCPERIVTVTGPTNSIFKAFTLI 81
Query: 83 LPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
+E ++ D G N GG GG+ + +RLIV SQ G +IGKGG+KIK
Sbjct: 82 CKKFEEWCSQF------HDIQGGGNAGGGGGVPRPPITLRLIVPASQCGSLIGKGGSKIK 135
Query: 143 ELRDTFDA 150
E+R+ A
Sbjct: 136 EIREVTGA 143
Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTI 68
+ LRL++P+ GS+IGKGGS I +R AS+ V P ER +TI
Sbjct: 112 ITLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQVASEMLPNSTERAVTI 162
>gi|363735768|ref|XP_003641607.1| PREDICTED: poly(rC)-binding protein 3-like [Gallus gallus]
gi|449506326|ref|XP_002191682.2| PREDICTED: poly(rC)-binding protein 3 [Taeniopygia guttata]
Length = 339
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 4 KVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITG 63
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED + + K +RL+V SQ
Sbjct: 64 PTDAIFK-------AFAMIAYKFE-----EDITNSMSNST--ATSKPPVTLRLVVPASQC 109
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 110 GSLIGKGGSKIKEIRESTGA 129
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 81 EDITNSMSNSTATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
>gi|28317389|tpe|CAD29864.1| TPA: hnRNP-E2 b [Xenopus laevis]
Length = 319
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+ ED K +RL+V SQ G
Sbjct: 66 NAIFKAFSMIIDKLE------------EDISSSMTNSTAS--SKPPVTLRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 61/178 (34%), Gaps = 50/178 (28%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKAS--------------------------- 53
V LRL++P+ GS+IGKGG I +R A
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIE 157
Query: 54 ----------------VTVPDCPGPERILTIFA-----ELENGLKVIEEVLPALDEIRQK 92
VT+P P P IFA ++ + + L L ++ +
Sbjct: 158 CVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLHQLAMQ 217
Query: 93 YGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
G G++GG ++ L + GCIIG+ G KI E+R A
Sbjct: 218 QSHFPMSHSGNTGFSGGIDASAQATSHE--LTIPNDLIGCIIGRQGAKINEIRQMSGA 273
>gi|332019831|gb|EGI60292.1| Poly(rC)-binding protein 3 [Acromyrmex echinatior]
Length = 566
Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 42/128 (32%), Positives = 65/128 (50%), Gaps = 7/128 (5%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
+RL++ + GS+IGK G + R R + A + + D PERI+T+ + K +
Sbjct: 20 IRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSCPERIVTVTGPTNSIFKAFTLI 79
Query: 83 LPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
+E ++ G GG GG+ + +RLIV SQ G +IGKGG+KIK
Sbjct: 80 CKKFEEWCSQF-------HDVPGSGAGGGGGVSRPPITLRLIVPASQCGSLIGKGGSKIK 132
Query: 143 ELRDTFDA 150
E+R+ A
Sbjct: 133 EIREVTGA 140
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTI 68
+ LRL++P+ GS+IGKGGS I +R AS+ V P ER +TI
Sbjct: 109 ITLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQVASEMLPNSTERAVTI 159
>gi|313235546|emb|CBY11001.1| unnamed protein product [Oikopleura dioica]
Length = 378
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 24 RLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAE-LENGLKVIEEV 82
R+LIP++ AGSVIG GGS I +LR ++ SV +PD PERIL I + G KVI
Sbjct: 102 RVLIPAKTAGSVIGIGGSTIKQLREEYGCSVMIPDSNSPERILAIRTQNYHLGGKVIGRC 161
Query: 83 LPALDEIRQK 92
LDE +K
Sbjct: 162 AEQLDEFLRK 171
>gi|54037961|gb|AAH84195.1| Pcbp2 protein [Xenopus laevis]
Length = 353
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+ ED K +RL+V SQ G
Sbjct: 66 NAIFKAFSMIIDKLE------------EDISSSMTNSTAS--SKPPVTLRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGIPQSI 155
Query: 76 LKVIEEVLPALDE 88
++ ++++ + E
Sbjct: 156 IECVKQICVVMLE 168
>gi|53749712|ref|NP_001005451.1| poly(rC) binding protein 3 [Xenopus (Silurana) tropicalis]
gi|49250542|gb|AAH74565.1| poly(rC) binding protein 2 [Xenopus (Silurana) tropicalis]
gi|89266917|emb|CAJ82240.1| novel protein similar to poly(rC) binding protein 2 [Xenopus
(Silurana) tropicalis]
Length = 353
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+ ED K +RL+V SQ G
Sbjct: 66 NAIFKAFSMIIDKLE------------EDISSSMTNSTAS--SKPPVTLRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
Score = 35.8 bits (81), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGIPQSI 155
Query: 76 LKVIEEVLPALDE 88
++ ++++ + E
Sbjct: 156 IECVKQICVVMLE 168
>gi|147901405|ref|NP_001084264.1| poly(rC) binding protein 2 [Xenopus laevis]
gi|5459450|emb|CAB50743.1| hnRNP-E2 protein [Xenopus laevis]
Length = 353
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+ ED K +RL+V SQ G
Sbjct: 66 NAIFKAFSMIIDKLE------------EDISSSMTNSTAS--SKPPVTLRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
Score = 35.8 bits (81), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGIPQSI 155
Query: 76 LKVIEEVLPALDE 88
++ ++++ + E
Sbjct: 156 IECVKQICVVMLE 168
>gi|148226696|ref|NP_001080123.1| poly(rC) binding protein 3 [Xenopus laevis]
gi|27370875|gb|AAH41241.1| Pcbp2b protein [Xenopus laevis]
Length = 353
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+ ED K +RL+V SQ G
Sbjct: 66 NAIFKAFSMIIDKLE------------EDISSSMTNSTAS--SKPPVTLRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
Score = 35.8 bits (81), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGIPQSI 155
Query: 76 LKVIEEVLPALDE 88
++ ++++ + E
Sbjct: 156 IECVKQICVVMLE 168
>gi|432931637|ref|XP_004081712.1| PREDICTED: poly(rC)-binding protein 3-like isoform 1 [Oryzias
latipes]
Length = 321
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 14/131 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ +RLL+ + GS+IGK G + ++R + A + + + PERI+TI + K
Sbjct: 15 TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDTIFK-- 72
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
A I K+ ED + + K +RL+V SQ G +IGKGG+
Sbjct: 73 -----AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQCGSLIGKGGS 120
Query: 140 KIKELRDTFDA 150
KIKE+R++ A
Sbjct: 121 KIKEMRESTGA 131
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 70/195 (35%), Gaps = 56/195 (28%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV----- 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 83 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDML 140
Query: 57 PDCPGPERILTIFAELENGLKVIEEVLPALDE---------IRQKYGKGRGGEDGGDGYN 107
P+ ER +TI E ++ ++++ + E R K GG Y
Sbjct: 141 PN--STERAVTISGTPEAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFSGGQAYT 198
Query: 108 GGGVGGLGKDDYDIRLIVHQSQA------------------------------------G 131
G + D +L HQ G
Sbjct: 199 IQGQYAIPHPDQLTKL--HQLAMQQTPFTPLGQTTPAFPGLDAAPPASTHELTIPNDLIG 256
Query: 132 CIIGKGGTKIKELRD 146
CIIG+ GTKI E+R
Sbjct: 257 CIIGRQGTKINEIRQ 271
>gi|432931639|ref|XP_004081713.1| PREDICTED: poly(rC)-binding protein 3-like isoform 2 [Oryzias
latipes]
Length = 343
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 14/131 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ +RLL+ + GS+IGK G + ++R + A + + + PERI+TI + K
Sbjct: 15 TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDTIFK-- 72
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
A I K+ ED + + K +RL+V SQ G +IGKGG+
Sbjct: 73 -----AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQCGSLIGKGGS 120
Query: 140 KIKELRDTFDA 150
KIKE+R++ A
Sbjct: 121 KIKEMRESTGA 131
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV----- 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 83 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDML 140
Query: 57 PDCPGPERILTIFAELENGLKVIEEVLPALDE 88
P+ ER +TI E ++ ++++ + E
Sbjct: 141 PN--STERAVTISGTPEAIIQCVKQICVVMLE 170
>gi|348511523|ref|XP_003443293.1| PREDICTED: poly(rC)-binding protein 3-like [Oreochromis niloticus]
Length = 321
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 14/131 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ +RLL+ + GS+IGK G + ++R + A + + + PERI+TI + K
Sbjct: 15 TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDTIFK-- 72
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
A I K+ ED + + K +RL+V SQ G +IGKGG+
Sbjct: 73 -----AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQCGSLIGKGGS 120
Query: 140 KIKELRDTFDA 150
KIKE+R++ A
Sbjct: 121 KIKEMRESTGA 131
Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 69/195 (35%), Gaps = 56/195 (28%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV----- 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 83 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDML 140
Query: 57 PDCPGPERILTIFAELENGLKVIEEVLPALDE---------IRQKYGKGRGGEDGGDGYN 107
P+ ER +TI E ++ + ++ + E R K GG Y
Sbjct: 141 PN--STERAVTISGTPEAIIQCVRQICVVMLESPPKGATIPYRPKPTSTPVIFSGGQAYT 198
Query: 108 GGGVGGLGKDDYDIRLIVHQSQA------------------------------------G 131
G + D +L HQ G
Sbjct: 199 IQGQYAIPHPDQLTKL--HQLAMQQTPFTPLGQTTPAFPGLDASPPASTHELTIPNDLIG 256
Query: 132 CIIGKGGTKIKELRD 146
CIIG+ GTKI E+R
Sbjct: 257 CIIGRQGTKINEIRQ 271
>gi|312372581|gb|EFR20511.1| hypothetical protein AND_19972 [Anopheles darlingi]
Length = 292
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 48/136 (35%)
Query: 11 FKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
KR R D E+RLLIPS K V + + +LTI A
Sbjct: 47 VKRMRS--EDQEVRLLIPS---------------------KEKVDITSRSYAQSVLTIAA 83
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
++E KV+++V+ LD G ++Y++R+++H S A
Sbjct: 84 DMETVTKVVKDVMKHLDR-------------------------AGDNEYELRILIHLSLA 118
Query: 131 GCIIGKGGTKIKELRD 146
GC+IG+GG+KIKE++D
Sbjct: 119 GCVIGRGGSKIKEIKD 134
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 15 RGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPE---RILTIFAE 71
R G N+ ELR+LI +AG VIG+GGS I ++++ + + P+ RI +
Sbjct: 101 RAGDNEYELRILIHLSLAGCVIGRGGSKIKEIKDEIGCRLKIFSNIPPQSTDRIAQVIGS 160
Query: 72 LENGLKVIEEVL 83
+ L+ + E++
Sbjct: 161 EDQCLRTLNEII 172
>gi|356530338|ref|XP_003533739.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 443
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 11/142 (7%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIF 69
KR+ G P D RL++P GS+IG+ G I ++ + ++ + V D P P+RI+
Sbjct: 44 KRWPGWPGDCVFRLIVPVGKVGSIIGRKGELIKKMCEETRSRIRVLDAPLGTPDRIV--- 100
Query: 70 AELENGLKVIEEVL-PALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQS 128
L +G + E L PA+D + + + + G + D N GL IRL+V +
Sbjct: 101 --LVSGKEDPEAALSPAMDAVVRIFKRVSGFSE-TDAENQESAAGLAFS--SIRLLVAST 155
Query: 129 QAGCIIGKGGTKIKELRDTFDA 150
QA +IGK G+ IK +++ A
Sbjct: 156 QAINLIGKQGSLIKSIQENTSA 177
>gi|414867775|tpg|DAA46332.1| TPA: nucleic acid binding protein [Zea mays]
Length = 448
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 70/141 (49%), Gaps = 9/141 (6%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIF 69
KR+ G P D RL++P GS+IG+ G I RL + KA V + + P ERI+ +
Sbjct: 37 KRWPGWPGDSVFRLVVPVLKVGSIIGRKGELIKRLVEETKARVRILEGPVGATERIVLVS 96
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
+ + L E+ PA+D + + + + G DG G D RL+V +Q
Sbjct: 97 GKEDPDL----ELPPAMDALMRVFKRVTGITDGA---AEGTQAAATPDVCAARLLVPGAQ 149
Query: 130 AGCIIGKGGTKIKELRDTFDA 150
A +IGK G IK ++++ A
Sbjct: 150 AINLIGKQGATIKAIQESTSA 170
>gi|410897345|ref|XP_003962159.1| PREDICTED: poly(rC)-binding protein 3-like [Takifugu rubripes]
Length = 321
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 14/131 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ +RLL+ + GS+IGK G + ++R + A + + + PERI+TI + K
Sbjct: 15 TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDTIFK-- 72
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
A I K+ ED + + K +RL+V SQ G +IGKGG+
Sbjct: 73 -----AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQCGSLIGKGGS 120
Query: 140 KIKELRDTFDA 150
KIKE+R++ A
Sbjct: 121 KIKEMRESTGA 131
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 72/195 (36%), Gaps = 56/195 (28%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV----- 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 83 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDML 140
Query: 57 PDCPGPERILTIFAELENGLKVIEEVLPALDE---------IRQKYGKGRGGEDGGDGYN 107
P+ ER +TI E ++ ++++ + E R K GG Y
Sbjct: 141 PN--STERAVTISGTPEAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFSGGQAYT 198
Query: 108 GGGVGGLGKDDYDIRLIVHQ-----------SQA-------------------------G 131
G + D +L HQ QA G
Sbjct: 199 IQGQYAIPHPDQLTKL--HQLAMQQTPFTPLGQATPAFPGLDASPPASTHELTIPNDLIG 256
Query: 132 CIIGKGGTKIKELRD 146
CIIG+ GTKI E+R
Sbjct: 257 CIIGRQGTKINEIRQ 271
>gi|219888687|gb|ACL54718.1| unknown [Zea mays]
Length = 448
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 70/141 (49%), Gaps = 9/141 (6%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIF 69
KR+ G P D RL++P GS+IG+ G I RL + KA V + + P ERI+ +
Sbjct: 37 KRWPGWPGDSVFRLVVPVLKVGSIIGRKGELIKRLVEETKARVRILEGPVGATERIVLVS 96
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
+ + L E+ PA+D + + + + G DG G D RL+V +Q
Sbjct: 97 GKEDPDL----ELPPAMDALMRVFKRVTGITDGA---AEGTQAAATPDVCAARLLVPGAQ 149
Query: 130 AGCIIGKGGTKIKELRDTFDA 150
A +IGK G IK ++++ A
Sbjct: 150 AINLIGKQGATIKAIQESTSA 170
>gi|226497902|ref|NP_001151605.1| nucleic acid binding protein [Zea mays]
gi|195648058|gb|ACG43497.1| nucleic acid binding protein [Zea mays]
Length = 524
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 10/134 (7%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--PERILTIFAELE 73
G P + R+L+P++ G++IG+ G I ++ + KA + + D P PER + I A+ E
Sbjct: 116 GWPGESVFRILVPAQKVGAIIGRKGEFIKKMCEETKARIKILDGPPGVPERAVMISAKDE 175
Query: 74 NGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCI 133
+ PA+D + + + + DG G +G RL+V SQAG +
Sbjct: 176 PD----APLSPAMDGLLRVHKRITDSSDGESSQPQRSAGNIGP----TRLLVPSSQAGSL 227
Query: 134 IGKGGTKIKELRDT 147
IGK G IK ++D+
Sbjct: 228 IGKQGATIKSIQDS 241
>gi|156388117|ref|XP_001634548.1| predicted protein [Nematostella vectensis]
gi|156221632|gb|EDO42485.1| predicted protein [Nematostella vectensis]
Length = 338
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 68/136 (50%), Gaps = 17/136 (12%)
Query: 15 RGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELEN 74
RG +++ L++++ + GS+IGK GS I + R + A + + D PERI+++
Sbjct: 21 RGHSSNLVLKMIMQGKDIGSIIGKEGSTIKQFRQESNAHINISDGSTPERIVSV-----T 75
Query: 75 GLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCII 134
G K + V+ A I QK ED + +RLIV SQ G II
Sbjct: 76 GTK--DAVVTAFALIGQKL------EDELKSNSKSNT----TPPVTLRLIVPGSQCGSII 123
Query: 135 GKGGTKIKELRDTFDA 150
GKGG KIKE+R+ A
Sbjct: 124 GKGGAKIKEIREVSGA 139
Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
SN K P V LRL++P GS+IGKGG+ I +R ASV V
Sbjct: 98 SNSKSNTTPP--VTLRLIVPGSQCGSIIGKGGAKIKEIREVSGASVVV 143
>gi|431902890|gb|ELK09105.1| Heterogeneous nuclear ribonucleoprotein K [Pteropus alecto]
Length = 438
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 67/143 (46%), Gaps = 35/143 (24%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D P P
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDGL------QLPSPTA 80
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLI 124
+ E + A++ + ++ KG D ++RL+
Sbjct: 81 TSQLPLESD-----------AVECLNYQHYKG------------------SDFDCELRLL 111
Query: 125 VHQSQAGCIIGKGGTKIKELRDT 147
+HQS AG IIG G KIKELR++
Sbjct: 112 IHQSLAGGIIGVKGAKIKELRES 134
Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 302 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITI 355
>gi|402886179|ref|XP_003906515.1| PREDICTED: poly(rC)-binding protein 2 [Papio anubis]
Length = 340
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+ K
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFA 73
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
++ L+E D + +RL+V SQ G +IGKGG K
Sbjct: 74 MIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGSLIGKGGCK 119
Query: 141 IKELRDTFDA 150
IKE+R+ +A
Sbjct: 120 IKEIREVTEA 129
>gi|307199010|gb|EFN79734.1| Poly(rC)-binding protein 3 [Harpegnathos saltator]
Length = 469
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 43/128 (33%), Positives = 67/128 (52%), Gaps = 7/128 (5%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
+RL++ + GS+IGK G + R R + A + + D PERI+T+ + K +
Sbjct: 17 IRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSCPERIVTVTGPTNSIFKAFTLI 76
Query: 83 LPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
+E ++ +GG GG GG+ + +RLIV SQ G +IGKGG+KIK
Sbjct: 77 CKKFEEWCSQFHDIQGG-------GAGGGGGVSRPPITLRLIVPASQCGSLIGKGGSKIK 129
Query: 143 ELRDTFDA 150
E+R+ A
Sbjct: 130 EIREVTGA 137
Score = 37.4 bits (85), Expect = 2.2, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTI 68
+ LRL++P+ GS+IGKGGS I +R AS+ V P ER +TI
Sbjct: 106 ITLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQVASEMLPNSTERAVTI 156
Score = 35.4 bits (80), Expect = 8.8, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC 59
SN R + N+ + +P+ + G +IGKGG+ IA +R A + + +C
Sbjct: 262 SNTNRQQPAANNQTHEMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNC 312
>gi|356556240|ref|XP_003546434.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 442
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 11/142 (7%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIF 69
KR+ G P D RL++P GS+IG+ G I ++ + ++ + V D P P+RI+
Sbjct: 43 KRWPGWPGDCVFRLIVPVGKVGSIIGRKGELIKKMCEETRSRIRVLDAPLGTPDRIV--- 99
Query: 70 AELENGLKVIEEVL-PALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQS 128
L +G + E L PA+D + + + + G + D N GL IRL+V +
Sbjct: 100 --LVSGKEEPEAALSPAMDAVVRIFKRVSGLSE-TDAENKESAAGLAF--CSIRLLVAST 154
Query: 129 QAGCIIGKGGTKIKELRDTFDA 150
QA +IGK G+ IK +++ A
Sbjct: 155 QAINLIGKQGSLIKSIQENTSA 176
>gi|41055221|ref|NP_957486.1| poly(rC)-binding protein 2 [Danio rerio]
gi|28279638|gb|AAH45508.1| Poly(rC) binding protein 2 [Danio rerio]
gi|37681899|gb|AAQ97827.1| poly(rC) binding protein 2 [Danio rerio]
gi|42744604|gb|AAH66603.1| Pcbp2 protein [Danio rerio]
Length = 318
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+ ED + K +R++V SQ G
Sbjct: 66 TAIFKAFSMIIEKLE------------EDISSSMSNS--TATSKPPVTLRIVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
>gi|301604860|ref|XP_002932078.1| PREDICTED: poly(rC)-binding protein 3-like [Xenopus (Silurana)
tropicalis]
Length = 339
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 4 KVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITG 63
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED + + K +RL+V SQ
Sbjct: 64 PTDAIFK-------AFAMIAYKFE-----EDIINSMSNST--ATSKPPVTLRLVVPASQC 109
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 110 GSLIGKGGSKIKEIRESTGA 129
Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 81 EDIINSMSNSTATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
>gi|66472276|ref|NP_001018567.1| poly(rC) binding protein 3 [Danio rerio]
gi|63101380|gb|AAH95089.1| Poly(rC) binding protein 3 [Danio rerio]
gi|182890686|gb|AAI65090.1| Pcbp3 protein [Danio rerio]
Length = 241
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 14/131 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ +RLL+ + GS+IGK G + ++R + A + + + PERI+TI + K
Sbjct: 15 TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFK-- 72
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
A I K+ ED + + K +RL+V SQ G +IGKGG+
Sbjct: 73 -----AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQCGSLIGKGGS 120
Query: 140 KIKELRDTFDA 150
KIKE+R++ A
Sbjct: 121 KIKEMRESTGA 131
Score = 39.3 bits (90), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV----- 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 83 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDML 140
Query: 57 PDCPGPERILTIFAELENGLKVIEEV 82
P+ ER +TI E ++ ++++
Sbjct: 141 PN--STERAVTISGTPEAIIQCVKQI 164
>gi|344266065|ref|XP_003405101.1| PREDICTED: poly(rC)-binding protein 2-like isoform 2 [Loxodonta
africana]
Length = 293
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+E D + +RL+V SQ G
Sbjct: 66 NAIFKAFAMIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 28/150 (18%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGIPQSI 155
Query: 76 LKVIEEVL-----------------PALDEIRQKYGKGRG--GEDGGDGYNGGGVGGLGK 116
++ ++++ P L ++ Q + G G++ G
Sbjct: 156 IECVKQICVVMLEAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSAGLDASAQT 215
Query: 117 DDYDIRLIVHQSQAGCIIGKGGTKIKELRD 146
++ L + GCIIG+ G KI E+R
Sbjct: 216 TSHE--LTIPNDLIGCIIGRQGAKINEIRQ 243
>gi|213511793|ref|NP_001133381.1| poly(rC)-binding protein 2 [Salmo salar]
gi|209152662|gb|ACI33123.1| PolyrC-binding protein 2 [Salmo salar]
Length = 327
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+ ED K +R++V SQ G
Sbjct: 66 TAIFKAFSMIIEKLE------------EDISSSMTNS--TATSKPPVTLRIVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
>gi|209156062|gb|ACI34263.1| PolyrC-binding protein 2 [Salmo salar]
Length = 318
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+ ED K +R++V SQ G
Sbjct: 66 TAIFKAFSMIIEKLE------------EDISSSMTNS--TATSKPPVTLRIVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 68/177 (38%), Gaps = 49/177 (27%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LR+++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRIVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGTPQSI 155
Query: 76 LKVIEEVLPALDEIRQK-----YGKGRGGED----GGDGYNGGGVGGLGKDDYD--IRLI 124
++ ++++ + E K Y G GG Y G + + D +L
Sbjct: 156 IECVKQICVVMLESPPKGVTIPYRPKPSGSPVIFAGGQAYAVQGQHAIPQPDLTKLHQLA 215
Query: 125 VHQSQ-------------------------------AGCIIGKGGTKIKELRDTFDA 150
+ QS GCIIG+ G+KI E+R A
Sbjct: 216 MQQSPFPMGPNNPGFQGGMDASAQTSSHEMTIPNDLIGCIIGRQGSKINEIRQMSGA 272
>gi|90652817|ref|NP_001035073.1| uncharacterized protein LOC664755 [Danio rerio]
gi|68533566|gb|AAH98540.1| Zgc:110045 [Danio rerio]
Length = 222
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 14/131 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ +RLL+ + GS+IGK G + ++R + A + + D PERI+TI E K
Sbjct: 16 TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISDGSSPERIVTITGASEVIFK-- 73
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
A I +K+ ED V + +RL+ SQ G +IGKGG+
Sbjct: 74 -----AFAMIAEKF-----EEDILASMINSTV--TSRPPVTLRLVFPASQCGSLIGKGGS 121
Query: 140 KIKELRDTFDA 150
KIKE+R++ A
Sbjct: 122 KIKEIRESTGA 132
Score = 35.8 bits (81), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTI 68
V LRL+ P+ GS+IGKGGS I +R A V V PD ER +TI
Sbjct: 101 VTLRLVFPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDLLPD--STERAVTI 151
>gi|387915508|gb|AFK11363.1| alphaCP-3 [Callorhinchus milii]
Length = 349
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 68/140 (48%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 4 KVTEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITG 63
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED + K +RL+V SQ
Sbjct: 64 PTDAIFK-------AFAMIAFKFE-----EDINNSMTNSP--ATSKPPVTLRLVVPASQC 109
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 110 GSLIGKGGSKIKEIRESTGA 129
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
>gi|345320820|ref|XP_001521752.2| PREDICTED: poly(rC)-binding protein 3-like [Ornithorhynchus
anatinus]
Length = 261
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 4 KVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITG 63
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED + + K +RL+V SQ
Sbjct: 64 PTDAIFK-------AFAMIAYKFE-----EDIINSMSNST--ATSKPPVTLRLVVPASQC 109
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 110 GSLIGKGGSKIKEIRESTGA 129
Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 81 EDIINSMSNSTATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
>gi|149031922|gb|EDL86834.1| rCG50739, isoform CRA_c [Rattus norvegicus]
Length = 317
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+E D + +RL+V SQ G
Sbjct: 66 NAIFKAFAMIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
Score = 35.0 bits (79), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGIPQSI 155
Query: 76 LKVIEEVLPALDE 88
++ ++++ + E
Sbjct: 156 IECVKQICVVMLE 168
>gi|148672030|gb|EDL03977.1| poly(rC) binding protein 2, isoform CRA_d [Mus musculus]
Length = 316
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+E D + +RL+V SQ G
Sbjct: 66 NAIFKAFAMIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 65/175 (37%), Gaps = 47/175 (26%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGIPQSI 155
Query: 76 LKVIEEVLPALDE---------------------------------IRQKYGKGRGGEDG 102
++ ++++ + E ++Q + G G
Sbjct: 156 IECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQLTKLHQLAMQQSHFPMTHGNTG 215
Query: 103 GDGYNGGG--VGGLGKDDYDIRLIVHQSQ-----AGCIIGKGGTKIKELRDTFDA 150
G V G D + H+ GCIIG+ G KI E+R A
Sbjct: 216 FSGIESSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGA 270
>gi|417399108|gb|JAA46584.1| Putative polyc-binding alphacp-1 [Desmodus rotundus]
Length = 333
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+E D + +RL+V SQ G
Sbjct: 66 NAIFKAFAMIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGIPQSI 155
Query: 76 LKVIEEV-LPALDEIRQKYGKG 96
++ ++++ + L+ + Q KG
Sbjct: 156 IECVKQICVVMLETLSQSPPKG 177
>gi|417398902|gb|JAA46484.1| Putative polyc-binding alphacp-1 [Desmodus rotundus]
Length = 320
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+E D + +RL+V SQ G
Sbjct: 66 NAIFKAFAMIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGIPQSI 155
Query: 76 LKVIEEV-LPALDEIRQKYGKG 96
++ ++++ + L+ + Q KG
Sbjct: 156 IECVKQICVVMLETLSQSPPKG 177
>gi|327260862|ref|XP_003215252.1| PREDICTED: poly(rC)-binding protein 3-like [Anolis carolinensis]
Length = 339
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 4 KVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITG 63
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED + + K +RL+V SQ
Sbjct: 64 PTDAIFK-------AFAMIAYKFE-----EDIINSMSNST--ATSKPPVTLRLVVPASQC 109
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 110 GSLIGKGGSKIKEIRESTGA 129
Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 81 EDIINSMSNSTATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
>gi|225707620|gb|ACO09656.1| PolyrC-binding protein 2 [Osmerus mordax]
Length = 318
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+ ED K +R++V SQ G
Sbjct: 66 TAIFKAFSMIIEKLE------------EDISSSMTNS--TATSKPPVTLRIVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 67/173 (38%), Gaps = 49/173 (28%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LR+++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRIVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGTPQSI 155
Query: 76 LKVIEEVLPALDE------IRQKYGKGRGGED----GGDGYNGGGVGGLGKDDYD--IRL 123
++ ++++ + E + Y G GG Y G + + D +L
Sbjct: 156 IECVKQICVVMLEQSPPKGVTIPYRPKPSGSPVIFAGGQAYAVQGQHAIPQPDLTKLHQL 215
Query: 124 IVHQSQ------------------------------AGCIIGKGGTKIKELRD 146
+ QS GCIIG+ G+KI E+R
Sbjct: 216 AMQQSPFPIAPNNQGFTGMDASAQTSSHEMTIPNDLIGCIIGRQGSKINEIRQ 268
>gi|431893776|gb|ELK03594.1| Poly(rC)-binding protein 3 [Pteropus alecto]
Length = 339
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R++ A + + + PERI+TI
Sbjct: 4 KVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMRDESGARINISEGNCPERIVTITG 63
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED + + K +RL+V SQ
Sbjct: 64 PTDAIFK-------AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQC 109
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 110 GSLIGKGGSKIKEIRESTGA 129
Score = 38.9 bits (89), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 81 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
>gi|402862114|ref|XP_003895414.1| PREDICTED: poly(rC)-binding protein 3-like, partial [Papio anubis]
Length = 327
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ +RLL+ + GS+IGK G + ++R + A + + + PERI+TI + K
Sbjct: 45 TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAF 104
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNG-GGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
+ +E D N K +RL+V SQ G +IGKGG
Sbjct: 105 AMIAYKFEE---------------DIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGG 149
Query: 139 TKIKELRDTFDA 150
+KIKE+R++ A
Sbjct: 150 SKIKEIRESTGA 161
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV----- 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 113 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDML 170
Query: 57 PDCPGPERILTIFAELENGLKVIEEVLPALDE 88
P+ ER +TI + ++ ++++ + E
Sbjct: 171 PN--STERAVTISGTPDAIIQCVKQICVVMLE 200
>gi|12597878|gb|AAG60186.1|AC084763_6 putative nucleic acid binding protein [Oryza sativa Japonica Group]
gi|31433543|gb|AAP55041.1| KH domain-containing protein, putative, expressed [Oryza sativa
Japonica Group]
gi|125532979|gb|EAY79544.1| hypothetical protein OsI_34673 [Oryza sativa Indica Group]
gi|125575714|gb|EAZ16998.1| hypothetical protein OsJ_32483 [Oryza sativa Japonica Group]
gi|215769329|dbj|BAH01558.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 458
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 45/138 (32%), Positives = 70/138 (50%), Gaps = 11/138 (7%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIF 69
KR+ G P D RL++P GS+IG+ G I RL + KA V V + P ERI+ +
Sbjct: 47 KRWPGWPGDSVFRLVVPVLKVGSIIGRKGELIKRLVEETKAKVRVLEGPVGATERIVLVS 106
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDG-GDGYNGGGVGGLGKDDYDIRLIVHQS 128
+ + L E+ PA+D + + + + G DG +G G+ RL+V +
Sbjct: 107 GKEDPAL----ELPPAMDALMRVFKRVSGITDGAAEGTQAATAPGVCA----ARLLVPGA 158
Query: 129 QAGCIIGKGGTKIKELRD 146
QA +IGK G IK +++
Sbjct: 159 QAINLIGKQGASIKAIQE 176
>gi|348528761|ref|XP_003451884.1| PREDICTED: poly(rC)-binding protein 2-like [Oreochromis niloticus]
Length = 317
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+ ED K +R++V SQ G
Sbjct: 66 TAIFKAFSMIIEKLE------------EDISSSMTNS--TATSKPPVTLRIVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 66/172 (38%), Gaps = 48/172 (27%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LR+++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRIVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGTPQSI 155
Query: 76 LKVIEEVLPALDEIRQK-----YGKGRGGED----GGDGYNGGGVGGLGKDDYD--IRLI 124
++ ++++ + E K Y G GG Y G + + D +L
Sbjct: 156 IECVKQICVVMLESPPKGVTIPYRPKPSGSPVIFAGGQAYAVQGQHAIPQPDLTKLHQLA 215
Query: 125 VHQSQ------------------------------AGCIIGKGGTKIKELRD 146
+ QS GCIIG+ G KI E+R
Sbjct: 216 MQQSPFPIAPSNQGFTGMDASAQTSSHEMTIPNDLIGCIIGRQGAKINEIRQ 267
>gi|226502036|ref|NP_001148766.1| nucleic acid binding protein [Zea mays]
gi|195621990|gb|ACG32825.1| nucleic acid binding protein [Zea mays]
Length = 441
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 72/142 (50%), Gaps = 11/142 (7%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIF 69
KR+ G P D RL++P GS+IG+ G I RL KA V + + P ERI+ +
Sbjct: 31 KRWPGWPGDSVFRLVVPVLKVGSIIGRKGELIKRLVEGTKARVRILEGPVGATERIVLVS 90
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDG-GDGYNGGGVGGLGKDDYDIRLIVHQS 128
+ + GL E+ PA+D + + + + G DG +G G+ RL+V +
Sbjct: 91 GKEDPGL----ELSPAMDALMRVFKRVIGITDGAAEGTQAAATPGVCA----ARLLVPGA 142
Query: 129 QAGCIIGKGGTKIKELRDTFDA 150
QA +IGK G IK ++++ A
Sbjct: 143 QAINLIGKQGATIKAIQESTGA 164
>gi|413955216|gb|AFW87865.1| nucleic acid binding protein [Zea mays]
Length = 441
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 72/142 (50%), Gaps = 11/142 (7%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIF 69
KR+ G P D RL++P GS+IG+ G I RL KA V + + P ERI+ +
Sbjct: 31 KRWPGWPGDSVFRLVVPVLKVGSIIGRKGELIKRLVEGTKARVRILEGPVGATERIVLVS 90
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDG-GDGYNGGGVGGLGKDDYDIRLIVHQS 128
+ + GL E+ PA+D + + + + G DG +G G+ RL+V +
Sbjct: 91 GKEDPGL----ELSPAMDALMRVFKRVIGITDGAAEGTQAAATPGVCA----ARLLVPGA 142
Query: 129 QAGCIIGKGGTKIKELRDTFDA 150
QA +IGK G IK ++++ A
Sbjct: 143 QAINLIGKQGATIKAIQESTGA 164
>gi|495128|emb|CAA53546.1| mCBP [Mus musculus]
Length = 331
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+E D + +RL+V SQ G
Sbjct: 66 NAIFKAFAMIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
Score = 35.0 bits (79), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGIPQSI 155
Query: 76 LKVIEEVLPALDE 88
++ ++++ + E
Sbjct: 156 IECVKQICVVMLE 168
>gi|432110248|gb|ELK34019.1| Poly(rC)-binding protein 3 [Myotis davidii]
Length = 347
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 46 KVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITG 105
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED + + K +RL+V SQ
Sbjct: 106 PTDAIFK-------AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQC 151
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 152 GSLIGKGGSKIKEIRESTGA 171
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 68/179 (37%), Gaps = 38/179 (21%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV----- 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 123 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDML 180
Query: 57 PDCPGPERILTIFAELENGLKVIEEVLPALDE---------IRQKYGKGRGGEDGGDGYN 107
P+ ER +TI + ++ ++++ + E R K GG Y
Sbjct: 181 PN--STERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYT 238
Query: 108 GGGVGGLGKDDYDIR--------------------LIVHQSQAGCIIGKGGTKIKELRD 146
G + D L + GCIIG+ GTKI E+R
Sbjct: 239 IQGQYAIPHPDVSFHFVCLPFSSCLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQ 297
>gi|383863653|ref|XP_003707294.1| PREDICTED: RNA-binding protein Nova-2-like isoform 1 [Megachile
rotundata]
Length = 514
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 15/137 (10%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTIFA 70
GG L++L+P AG++IGKGG IA+L+ D A V + PG ER+ I
Sbjct: 40 GGDGTYHLKVLVPGVAAGAIIGKGGDTIAQLQKDTGAKVKISKSHDFYPGTTERVCLITG 99
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKG-RGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
LE + V++ + +D+IR+K + D G + D ++++V S
Sbjct: 100 SLEAIMAVMDFI---MDKIREKPDLTLKTTVDSESGKT------TAERDKQVKILVPNST 150
Query: 130 AGCIIGKGGTKIKELRD 146
AG IIGK G IK++++
Sbjct: 151 AGMIIGKAGNYIKQIKE 167
Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVP----DCPGPERILTIFAELENG 75
D ++++L+P+ AG +IGK G+ I +++ + + V + D ER +T+ E EN
Sbjct: 139 DKQVKILVPNSTAGMIIGKAGNYIKQIKEESGSYVQISQKAKDVSLQERCITVIGEKENN 198
Query: 76 LKVIEEVL 83
+ +L
Sbjct: 199 RNALMMIL 206
>gi|355733298|gb|AES10985.1| poly binding protein 2 [Mustela putorius furo]
Length = 148
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 18 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 77
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+E D + +RL+V SQ G
Sbjct: 78 NAIFKAFAMIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGS 123
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 124 LIGKGGCKIKEIRESTGA 141
>gi|432857624|ref|XP_004068722.1| PREDICTED: poly(rC)-binding protein 2-like [Oryzias latipes]
Length = 317
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+ ED K +R++V SQ G
Sbjct: 66 TAIFKAFSMIIEKLE------------EDISSSMTNS--TATSKPPVTLRIVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 66/172 (38%), Gaps = 48/172 (27%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LR+++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRIVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGTPQSI 155
Query: 76 LKVIEEVLPALDEIRQK-----YGKGRGGED----GGDGYNGGGVGGLGKDDYD--IRLI 124
++ ++++ + E K Y G GG Y G + + D +L
Sbjct: 156 IECVKQICVVMLESPPKGVTIPYRPKPSGSPVIFAGGQAYAVQGQHAIPQPDLTKLHQLA 215
Query: 125 VHQSQ------------------------------AGCIIGKGGTKIKELRD 146
+ QS GCIIG+ G KI E+R
Sbjct: 216 MQQSPFPIAPSNQGFTGIDASAQTSSHEMTIPNDLIGCIIGRQGAKINEIRQ 267
>gi|426218397|ref|XP_004003433.1| PREDICTED: poly(rC)-binding protein 3 isoform 2 [Ovis aries]
Length = 319
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 4 KVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITG 63
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED + + K +RL+V SQ
Sbjct: 64 PTDAIFK-------AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQC 109
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 110 GSLIGKGGSKIKEIRESTGA 129
Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 71/193 (36%), Gaps = 52/193 (26%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV----- 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 81 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDML 138
Query: 57 PDCPGPERILTIFAELENGLKVIEEVLPALDE---------IRQKYGKGRGGEDGGDGYN 107
P+ ER +TI + ++ ++++ + E + K GG Y
Sbjct: 139 PN--STERAVTISGTPDAIIQCVKQICVVMLESPRKGVTVVVAPKPASTPVIFAGGQAYT 196
Query: 108 GGGVGGLGKDDYD--IRLIVHQSQ--------------------------------AGCI 133
G + D +L + Q+ GCI
Sbjct: 197 IQGQYAIPHPDLTKLHQLAMQQTPFPPLGQTNPAFPAGLDASPPASTHELTIPNDLIGCI 256
Query: 134 IGKGGTKIKELRD 146
IG+ GTKI E+R
Sbjct: 257 IGRQGTKINEIRQ 269
>gi|193083112|ref|NP_001122385.1| poly(rC)-binding protein 2 isoform f [Homo sapiens]
gi|66911068|gb|AAH97410.1| Pcbp2 protein [Rattus norvegicus]
gi|78395095|gb|AAI07689.1| PCBP2 protein [Homo sapiens]
gi|417399138|gb|JAA46599.1| Putative polyc-binding alphacp-1 [Desmodus rotundus]
Length = 335
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+E D + +RL+V SQ G
Sbjct: 66 NAIFKAFAMIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGIPQSI 155
Query: 76 LKVIEEV-LPALDEIRQKYGKG 96
++ ++++ + L+ + Q KG
Sbjct: 156 IECVKQICVVMLETLSQSPPKG 177
>gi|395536911|ref|XP_003770452.1| PREDICTED: poly(rC)-binding protein 3 isoform 3 [Sarcophilus
harrisii]
Length = 318
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 4 KVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITG 63
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED + + K +RL+V SQ
Sbjct: 64 PTDAIFK-------AFAMIAYKFE-----EDIINSMSNST--ATSKPPVTLRLVVPASQC 109
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 110 GSLIGKGGSKIKEIRESTGA 129
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 71/192 (36%), Gaps = 51/192 (26%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV----- 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 81 EDIINSMSNSTATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDML 138
Query: 57 PDCPGPERILTIFAELENGLKVIEEVLPALDE---------IRQKYGKGRGGEDGGDGYN 107
P+ ER +TI + ++ ++++ + E R K GG Y
Sbjct: 139 PN--STERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYT 196
Query: 108 GGGVGGLGKDDYD--IRLIVHQSQ-------------------------------AGCII 134
G + D +L + Q+ GCII
Sbjct: 197 IQGQYAIPHPDLTKLHQLAMQQTPFPPLGQTTPAFPGLDASPPASTHELTIPNDLIGCII 256
Query: 135 GKGGTKIKELRD 146
G+ GTKI E+R
Sbjct: 257 GRQGTKINEIRQ 268
>gi|354490197|ref|XP_003507246.1| PREDICTED: poly(rC)-binding protein 2 isoform 4 [Cricetulus
griseus]
Length = 322
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+E D + +RL+V SQ G
Sbjct: 66 NAIFKAFAMIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGIPQSI 155
Query: 76 LKVIEEV-LPALDEIRQKYGKG 96
++ ++++ + L+ + Q KG
Sbjct: 156 IECVKQICVVMLETLSQSPPKG 177
>gi|334350022|ref|XP_003342305.1| PREDICTED: poly(rC)-binding protein 2-like [Monodelphis domestica]
Length = 320
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+E D + +RL+V SQ G
Sbjct: 66 NAIFKAFAMIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
Score = 35.0 bits (79), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGIPQSI 155
Query: 76 LKVIEEVLPALDE 88
++ ++++ + E
Sbjct: 156 IECVKQICVVMLE 168
>gi|395536907|ref|XP_003770450.1| PREDICTED: poly(rC)-binding protein 3 isoform 1 [Sarcophilus
harrisii]
Length = 339
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 4 KVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITG 63
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED + + K +RL+V SQ
Sbjct: 64 PTDAIFK-------AFAMIAYKFE-----EDIINSMSNST--ATSKPPVTLRLVVPASQC 109
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 110 GSLIGKGGSKIKEIRESTGA 129
Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 81 EDIINSMSNSTATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
>gi|317418810|emb|CBN80848.1| PolyrC-binding protein 2 [Dicentrarchus labrax]
Length = 306
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+ ED K +R++V SQ G
Sbjct: 66 TAIFKAFSMIIEKLE------------EDISSSMTNS--TATSKPPVTLRIVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 66/172 (38%), Gaps = 48/172 (27%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LR+++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRIVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGTPQSI 155
Query: 76 LKVIEEVLPALDEIRQK-----YGKGRGGED----GGDGYNGGGVGGLGKDDYD--IRLI 124
++ ++++ + E K Y G GG Y G + + D +L
Sbjct: 156 IECVKQICVVMLESPPKGVTIPYRPKPSGSPVIFAGGQAYAVQGQHAIPQPDLTKLHQLA 215
Query: 125 VHQSQ------------------------------AGCIIGKGGTKIKELRD 146
+ QS GCIIG+ G KI E+R
Sbjct: 216 MQQSPFPIAPSNQGFTGIDASAQTSSHEMTIPNDLIGCIIGRQGAKINEIRQ 267
>gi|108862919|gb|ABA99242.2| FLK, putative, expressed [Oryza sativa Japonica Group]
gi|222617409|gb|EEE53541.1| hypothetical protein OsJ_36750 [Oryza sativa Japonica Group]
Length = 517
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 43/141 (30%), Positives = 74/141 (52%), Gaps = 10/141 (7%)
Query: 8 LSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--PERI 65
+++ K++ G P + R+L+P++ G+VIG+ G I ++ + +A + V D P P+R
Sbjct: 102 VTDEKKWPGWPGESVFRILVPAQKVGAVIGRKGEFIKKMCEESRARIKVLDGPPGVPDRA 161
Query: 66 LTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIV 125
+ I A+ E + PA+D + + + + G DG G +G RL+V
Sbjct: 162 VMISAKDEPD----APLPPAVDGLLRVHKRITDGLDGESDQPQRAAGTVGP----TRLLV 213
Query: 126 HQSQAGCIIGKGGTKIKELRD 146
SQAG +IGK G IK ++D
Sbjct: 214 PASQAGSLIGKQGATIKSIQD 234
>gi|148229933|ref|NP_001086212.1| MGC84166 protein [Xenopus laevis]
gi|49256273|gb|AAH74333.1| MGC84166 protein [Xenopus laevis]
Length = 225
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 4 KVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITG 63
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED + + K +RL+V SQ
Sbjct: 64 PTDAIFK-------AFAMIAYKFE-----EDIINSMSNST--ATSKPPVTLRLVVPASQC 109
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 110 GSLIGKGGSKIKEIRESTGA 129
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 81 EDIINSMSNSTATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
>gi|363747267|ref|XP_423701.3| PREDICTED: poly(rC)-binding protein 2-like isoform 4 [Gallus
gallus]
Length = 307
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+E D + +RL+V SQ G
Sbjct: 66 NAIFKAFAMIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 65/173 (37%), Gaps = 49/173 (28%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGIPQSI 155
Query: 76 LKVIEEVLPALDE---------IRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYD--IRLI 124
++ ++++ + E R K GG Y G + + D +L
Sbjct: 156 IECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLHQLA 215
Query: 125 VHQSQ-------------------------------AGCIIGKGGTKIKELRD 146
+ QS GCIIG+ G KI E+R
Sbjct: 216 MQQSHFPMSHGNTGFSAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQ 268
>gi|363747265|ref|XP_003643961.1| PREDICTED: poly(rC)-binding protein 2-like isoform 3 [Gallus
gallus]
Length = 320
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+E D + +RL+V SQ G
Sbjct: 66 NAIFKAFAMIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
Score = 35.0 bits (79), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGIPQSI 155
Query: 76 LKVIEEVLPALDE 88
++ ++++ + E
Sbjct: 156 IECVKQICVVMLE 168
>gi|334350025|ref|XP_003342306.1| PREDICTED: poly(rC)-binding protein 2-like [Monodelphis domestica]
gi|444513888|gb|ELV10473.1| Poly(rC)-binding protein 2 [Tupaia chinensis]
Length = 307
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+E D + +RL+V SQ G
Sbjct: 66 NAIFKAFAMIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 65/173 (37%), Gaps = 49/173 (28%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGIPQSI 155
Query: 76 LKVIEEVLPALDE---------IRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYD--IRLI 124
++ ++++ + E R K GG Y G + + D +L
Sbjct: 156 IECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLHQLA 215
Query: 125 VHQSQ-------------------------------AGCIIGKGGTKIKELRD 146
+ QS GCIIG+ G KI E+R
Sbjct: 216 MQQSHFPMTHGNTGFSAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQ 268
>gi|193083114|ref|NP_001122386.1| poly(rC)-binding protein 2 isoform g [Homo sapiens]
gi|73996231|ref|XP_857798.1| PREDICTED: poly(rC)-binding protein 2 isoform 15 [Canis lupus
familiaris]
gi|291389261|ref|XP_002711067.1| PREDICTED: poly(rC) binding protein 2-like isoform 4 [Oryctolagus
cuniculus]
gi|338726296|ref|XP_003365293.1| PREDICTED: poly(rC)-binding protein 2 [Equus caballus]
gi|426224374|ref|XP_004006346.1| PREDICTED: poly(rC)-binding protein 2 isoform 4 [Ovis aries]
gi|119617117|gb|EAW96711.1| poly(rC) binding protein 2, isoform CRA_f [Homo sapiens]
Length = 318
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+E D + +RL+V SQ G
Sbjct: 66 NAIFKAFAMIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 65/173 (37%), Gaps = 49/173 (28%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGIPQSI 155
Query: 76 LKVIEEVLPALDE---------IRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYD--IRLI 124
++ ++++ + E R K GG Y G + + D +L
Sbjct: 156 IECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLHQLA 215
Query: 125 VHQSQ-------------------------------AGCIIGKGGTKIKELRD 146
+ QS GCIIG+ G KI E+R
Sbjct: 216 MQQSHFPMTHGNTGFSAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQ 268
>gi|15082311|gb|AAH12061.1| PCBP3 protein [Homo sapiens]
Length = 313
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 4 KVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITG 63
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED + + K +RL+V SQ
Sbjct: 64 PTDAIFK-------AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQC 109
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 110 GSLIGKGGSKIKEIRESTGA 129
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 81 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
>gi|426218399|ref|XP_004003434.1| PREDICTED: poly(rC)-binding protein 3 isoform 3 [Ovis aries]
Length = 336
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 4 KVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITG 63
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED + + K +RL+V SQ
Sbjct: 64 PTDAIFK-------AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQC 109
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 110 GSLIGKGGSKIKEIRESTGA 129
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV----- 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 81 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDML 138
Query: 57 PDCPGPERILTIFAELENGLKVIEEVLPALDEIRQK 92
P+ ER +TI + ++ ++++ + E++ K
Sbjct: 139 PN--STERAVTISGTPDAIIQCVKQICVVMLEVQSK 172
>gi|194306633|ref|NP_001123613.1| poly(rC)-binding protein 3 isoform 2 [Homo sapiens]
gi|119629728|gb|EAX09323.1| poly(rC) binding protein 3, isoform CRA_a [Homo sapiens]
Length = 345
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 36 KVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITG 95
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED + + K +RL+V SQ
Sbjct: 96 PTDAIFK-------AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQC 141
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 142 GSLIGKGGSKIKEIRESTGA 161
Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 113 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
>gi|291327528|ref|NP_001167544.1| poly(rC)-binding protein 2 isoform 4 [Mus musculus]
gi|348581081|ref|XP_003476306.1| PREDICTED: poly(rC)-binding protein 2 isoform 4 [Cavia porcellus]
gi|74149644|dbj|BAE36444.1| unnamed protein product [Mus musculus]
gi|194378584|dbj|BAG63457.1| unnamed protein product [Homo sapiens]
gi|417398924|gb|JAA46495.1| Putative polyc-binding alphacp-1 [Desmodus rotundus]
Length = 322
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+E D + +RL+V SQ G
Sbjct: 66 NAIFKAFAMIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGIPQSI 155
Query: 76 LKVIEEV-LPALDEIRQKYGKG 96
++ ++++ + L+ + Q KG
Sbjct: 156 IECVKQICVVMLETLSQSPPKG 177
>gi|395851184|ref|XP_003798146.1| PREDICTED: poly(rC)-binding protein 3 [Otolemur garnettii]
Length = 361
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 4 KVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITG 63
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED + + K +RL+V SQ
Sbjct: 64 PTDAIFK-------AFAMIAYKFE-----EDIVNSMSNSP--ATSKPPVTLRLVVPASQC 109
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 110 GSLIGKGGSKIKEIRESTGA 129
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E + +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 81 EDIVNSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
>gi|354490193|ref|XP_003507244.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Cricetulus
griseus]
Length = 331
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+E D + +RL+V SQ G
Sbjct: 66 NAIFKAFAMIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
Score = 35.0 bits (79), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGIPQSI 155
Query: 76 LKVIEEVLPALDE 88
++ ++++ + E
Sbjct: 156 IECVKQICVVMLE 168
>gi|148833484|ref|NP_001092090.1| poly(rC)-binding protein 2 isoform c [Homo sapiens]
gi|157042772|ref|NP_001096636.1| poly(rC)-binding protein 2 isoform 3 [Mus musculus]
gi|73996241|ref|XP_857995.1| PREDICTED: poly(rC)-binding protein 2 isoform 20 [Canis lupus
familiaris]
gi|149714839|ref|XP_001504575.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Equus caballus]
gi|291389259|ref|XP_002711066.1| PREDICTED: poly(rC) binding protein 2-like isoform 3 [Oryctolagus
cuniculus]
gi|332206041|ref|XP_003252098.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Nomascus
leucogenys]
gi|348581075|ref|XP_003476303.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Cavia porcellus]
gi|410964551|ref|XP_003988817.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Felis catus]
gi|426224372|ref|XP_004006345.1| PREDICTED: poly(rC)-binding protein 2 isoform 3 [Ovis aries]
gi|426372755|ref|XP_004053283.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Gorilla gorilla
gorilla]
gi|51491472|dbj|BAD36897.1| poly(rC) binding protein 2 [Homo sapiens]
gi|119617112|gb|EAW96706.1| poly(rC) binding protein 2, isoform CRA_a [Homo sapiens]
gi|148672027|gb|EDL03974.1| poly(rC) binding protein 2, isoform CRA_a [Mus musculus]
gi|149031921|gb|EDL86833.1| rCG50739, isoform CRA_b [Rattus norvegicus]
Length = 331
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+E D + +RL+V SQ G
Sbjct: 66 NAIFKAFAMIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
Score = 35.0 bits (79), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGIPQSI 155
Query: 76 LKVIEEVLPALDE 88
++ ++++ + E
Sbjct: 156 IECVKQICVVMLE 168
>gi|308321889|gb|ADO28082.1| poly(rc)-binding protein 2 [Ictalurus furcatus]
Length = 318
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+ ED + K +R++V SQ G
Sbjct: 66 TAIFKAFSMIIDKLE------------EDISSSMSNS--TATSKPPVTLRIVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
>gi|426218395|ref|XP_004003432.1| PREDICTED: poly(rC)-binding protein 3 isoform 1 [Ovis aries]
Length = 345
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 36 KVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITG 95
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ + A I K+ ED + + K +RL+V SQ
Sbjct: 96 P-------TDAIFKAFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQC 141
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 142 GSLIGKGGSKIKEIRESTGA 161
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 113 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
>gi|348554794|ref|XP_003463210.1| PREDICTED: poly(rC)-binding protein 3-like [Cavia porcellus]
Length = 384
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 49 KVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITG 108
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED + + K +RL+V SQ
Sbjct: 109 PTDAIFK-------AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQC 154
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 155 GSLIGKGGSKIKEIRESTGA 174
Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 126 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 178
>gi|403297205|ref|XP_003939469.1| PREDICTED: poly(rC)-binding protein 3 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 351
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 14/131 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ +RLL+ + GS+IGK G + ++R + A + + + PERI+TI + K
Sbjct: 45 TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFK-- 102
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
A I K+ ED + + K +RL+V SQ G +IGKGG+
Sbjct: 103 -----AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQCGSLIGKGGS 150
Query: 140 KIKELRDTFDA 150
KIKE+R++ A
Sbjct: 151 KIKEIRESTGA 161
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 70/195 (35%), Gaps = 56/195 (28%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV----- 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 113 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDML 170
Query: 57 PDCPGPERILTIFAELENGLKVIEEVLPALDE---------IRQKYGKGRGGEDGGDGYN 107
P+ ER +TI + ++ ++++ + E R K GG Y
Sbjct: 171 PN--STERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYT 228
Query: 108 GGGVGGLGKDDYDIRLIVHQSQA------------------------------------G 131
G + D +L HQ G
Sbjct: 229 IQGQYAIPHPDQLTKL--HQLAMQQTPFPPLGQTNPAFPGLDASPPASTHELTIPNDLIG 286
Query: 132 CIIGKGGTKIKELRD 146
CIIG+ GTKI E+R
Sbjct: 287 CIIGRQGTKINEIRQ 301
>gi|338720838|ref|XP_001488421.3| PREDICTED: poly(rC)-binding protein 3 [Equus caballus]
Length = 393
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 36 KVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITG 95
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED + + K +RL+V SQ
Sbjct: 96 PTDAIFK-------AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQC 141
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 142 GSLIGKGGSKIKEIRESTGA 161
Score = 38.9 bits (89), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 113 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
>gi|318054596|ref|NP_001188110.1| poly(rC)-binding protein 2 [Ictalurus punctatus]
gi|308322769|gb|ADO28522.1| poly(rc)-binding protein 2 [Ictalurus punctatus]
Length = 318
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+ ED + K +R++V SQ G
Sbjct: 66 TAIFKAFSMIIDKLE------------EDISSSMSNS--TATSKPPVTLRIVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
>gi|426218401|ref|XP_004003435.1| PREDICTED: poly(rC)-binding protein 3 isoform 4 [Ovis aries]
Length = 332
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 4 KVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITG 63
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED + + K +RL+V SQ
Sbjct: 64 PTDAIFK-------AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQC 109
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 110 GSLIGKGGSKIKEIRESTGA 129
Score = 38.5 bits (88), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 81 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
>gi|410920039|ref|XP_003973491.1| PREDICTED: poly(rC)-binding protein 2-like [Takifugu rubripes]
Length = 327
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+ ED K +R++V SQ G
Sbjct: 66 TAIFKAFSMIIDKLE------------EDISSSMTNS--TATSKPPVTLRIVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 67/181 (37%), Gaps = 57/181 (31%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LR+++P+ GS+IGKGG I +R A V V P+ ER +TI +
Sbjct: 98 VTLRIVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGTAHSI 155
Query: 76 LKVIEEVLPALDEIRQK-----YGKGRGGED----GGDGYNGGGVGGLGKDDYDIRLI-- 124
++ ++++ + E K Y G GG Y G + + D I
Sbjct: 156 IECVKQICVVMLESPPKGVTIPYRPKPSGSPVIFAGGQAYAVQGQHAIPQPDSSSAAISP 215
Query: 125 ----VHQ-----------------------SQA------------GCIIGKGGTKIKELR 145
+HQ +QA GCIIG+ G KI E+R
Sbjct: 216 QLSKLHQLAMQQGPFPMATCNQGFTGMDASAQACSHEMTIPNDLIGCIIGRQGAKISEIR 275
Query: 146 D 146
Sbjct: 276 Q 276
>gi|403297203|ref|XP_003939468.1| PREDICTED: poly(rC)-binding protein 3 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 371
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 36 KVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITG 95
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED + + K +RL+V SQ
Sbjct: 96 PTDAIFK-------AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQC 141
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 142 GSLIGKGGSKIKEIRESTGA 161
Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 113 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
>gi|194306631|ref|NP_065389.2| poly(rC)-binding protein 3 isoform 1 [Homo sapiens]
gi|296439262|sp|P57721.2|PCBP3_HUMAN RecName: Full=Poly(rC)-binding protein 3; AltName: Full=Alpha-CP3
gi|119629729|gb|EAX09324.1| poly(rC) binding protein 3, isoform CRA_b [Homo sapiens]
Length = 371
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G + ++R + A + + + PERI+TI + K
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFK--- 102
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
A I K+ ED + + K +RL+V SQ G +IGKGG+K
Sbjct: 103 ----AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQCGSLIGKGGSK 151
Query: 141 IKELRDTFDA 150
IKE+R++ A
Sbjct: 152 IKEIRESTGA 161
Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 113 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
>gi|32564032|ref|NP_871834.1| Protein F26B1.2, isoform e [Caenorhabditis elegans]
gi|373218909|emb|CCD64195.1| Protein F26B1.2, isoform e [Caenorhabditis elegans]
Length = 93
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
E+RLL+ S+ AG++IGKGG NI RLR +F A V VPD PER
Sbjct: 51 EVRLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPDSNTPER 93
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 119 YDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
+++RL+V AG IIGKGG IK LR F+A
Sbjct: 50 FEVRLLVSSKSAGAIIGKGGENIKRLRAEFNA 81
>gi|332872312|ref|XP_001157899.2| PREDICTED: poly(rC)-binding protein 3 isoform 8 [Pan troglodytes]
gi|397506692|ref|XP_003823855.1| PREDICTED: poly(rC)-binding protein 3 isoform 1 [Pan paniscus]
gi|426393341|ref|XP_004062983.1| PREDICTED: poly(rC)-binding protein 3 [Gorilla gorilla gorilla]
Length = 371
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G + ++R + A + + + PERI+TI + K
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFK--- 102
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
A I K+ ED + + K +RL+V SQ G +IGKGG+K
Sbjct: 103 ----AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQCGSLIGKGGSK 151
Query: 141 IKELRDTFDA 150
IKE+R++ A
Sbjct: 152 IKEIRESTGA 161
Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 113 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
>gi|9957161|gb|AAG09238.1|AF176327_1 alphaCP-3 [Mus musculus]
Length = 339
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 4 KVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITG 63
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED + + K +RL+V SQ
Sbjct: 64 PTDAIFK-------AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQC 109
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 110 GSLIGKGGSKIKEIRESTGA 129
Score = 38.9 bits (89), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 81 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
>gi|9957165|gb|AAG09240.1|AF176329_1 alphaCP-3 [Homo sapiens]
Length = 339
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 4 KVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITG 63
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED + + K +RL+V SQ
Sbjct: 64 PTDAIFK-------AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQC 109
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 110 GSLIGKGGSKIKEIRESTGA 129
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 81 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
>gi|380798665|gb|AFE71208.1| poly(rC)-binding protein 3 isoform 1, partial [Macaca mulatta]
Length = 370
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 35 KVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITG 94
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED + + K +RL+V SQ
Sbjct: 95 PTDAIFK-------AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQC 140
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 141 GSLIGKGGSKIKEIRESTGA 160
Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 112 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 164
>gi|148699884|gb|EDL31831.1| poly(rC) binding protein 3, isoform CRA_b [Mus musculus]
gi|148699885|gb|EDL31832.1| poly(rC) binding protein 3, isoform CRA_b [Mus musculus]
gi|148699886|gb|EDL31833.1| poly(rC) binding protein 3, isoform CRA_b [Mus musculus]
gi|148699889|gb|EDL31836.1| poly(rC) binding protein 3, isoform CRA_b [Mus musculus]
gi|148699890|gb|EDL31837.1| poly(rC) binding protein 3, isoform CRA_b [Mus musculus]
gi|149043678|gb|EDL97129.1| rCG61051, isoform CRA_b [Rattus norvegicus]
gi|149043679|gb|EDL97130.1| rCG61051, isoform CRA_b [Rattus norvegicus]
gi|149043680|gb|EDL97131.1| rCG61051, isoform CRA_b [Rattus norvegicus]
Length = 339
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 4 KVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITG 63
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED + + K +RL+V SQ
Sbjct: 64 PTDAIFK-------AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQC 109
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 110 GSLIGKGGSKIKEIRESTGA 129
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 81 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
>gi|351697348|gb|EHB00267.1| Poly(rC)-binding protein 3 [Heterocephalus glaber]
Length = 427
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 79 KVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITG 138
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED + + K +RL+V SQ
Sbjct: 139 PTDAIFK-------AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQC 184
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 185 GSLIGKGGSKIKEIRESTGA 204
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 156 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 208
>gi|26330216|dbj|BAC28838.1| unnamed protein product [Mus musculus]
Length = 370
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 36 KVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITG 95
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED + + K +RL+V SQ
Sbjct: 96 PTDAIFK-------AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQC 141
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 142 GSLIGKGGSKIKEIRESTGA 161
Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 113 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
>gi|395536909|ref|XP_003770451.1| PREDICTED: poly(rC)-binding protein 3 isoform 2 [Sarcophilus
harrisii]
Length = 361
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 4 KVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITG 63
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED + + K +RL+V SQ
Sbjct: 64 PTDAIFK-------AFAMIAYKFE-----EDIINSMSNST--ATSKPPVTLRLVVPASQC 109
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 110 GSLIGKGGSKIKEIRESTGA 129
Score = 38.9 bits (89), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 81 EDIINSMSNSTATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
>gi|114684793|ref|XP_001157578.1| PREDICTED: poly(rC)-binding protein 3 isoform 2 [Pan troglodytes]
gi|397506694|ref|XP_003823856.1| PREDICTED: poly(rC)-binding protein 3 isoform 2 [Pan paniscus]
gi|426393343|ref|XP_004062984.1| PREDICTED: poly(rC)-binding protein 3 [Gorilla gorilla gorilla]
Length = 351
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G + ++R + A + + + PERI+TI + K
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFK--- 102
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
A I K+ ED + + K +RL+V SQ G +IGKGG+K
Sbjct: 103 ----AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQCGSLIGKGGSK 151
Query: 141 IKELRDTFDA 150
IKE+R++ A
Sbjct: 152 IKEIRESTGA 161
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 70/195 (35%), Gaps = 56/195 (28%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV----- 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 113 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDML 170
Query: 57 PDCPGPERILTIFAELENGLKVIEEVLPALDE---------IRQKYGKGRGGEDGGDGYN 107
P+ ER +TI + ++ ++++ + E R K GG Y
Sbjct: 171 PN--STERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYT 228
Query: 108 GGGVGGLGKDDYDIRLIVHQSQA------------------------------------G 131
G + D +L HQ G
Sbjct: 229 IQGQYAIPHPDQLTKL--HQLAMQQTPFPPLGQTNPAFPGLDASPPASTHELTIPNDLIG 286
Query: 132 CIIGKGGTKIKELRD 146
CIIG+ GTKI E+R
Sbjct: 287 CIIGRQGTKINEIRQ 301
>gi|27503479|gb|AAH42440.1| Pcbp3 protein [Mus musculus]
Length = 249
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 14/131 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ +RLL+ + GS+IGK G + ++R + A + + + PERI+TI + K
Sbjct: 13 TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFK-- 70
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
A I K+ ED + + K +RL+V SQ G +IGKGG+
Sbjct: 71 -----AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQCGSLIGKGGS 118
Query: 140 KIKELRDTFDA 150
KIKE+R++ A
Sbjct: 119 KIKEIRESTGA 129
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 81 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
>gi|417410200|gb|JAA51577.1| Putative polyc-binding alphacp-1, partial [Desmodus rotundus]
Length = 378
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 18 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 77
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+E D + +RL+V SQ G
Sbjct: 78 NAIFKAFAMIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGS 123
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 124 LIGKGGCKIKEIRESTGA 141
Score = 36.2 bits (82), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 110 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGIPQSI 167
Query: 76 LKVIEEV-LPALDEIRQKYGKG 96
++ ++++ + L+ + Q KG
Sbjct: 168 IECVKQICVVMLETLSQSPPKG 189
>gi|363747261|ref|XP_003643959.1| PREDICTED: poly(rC)-binding protein 2-like isoform 1 [Gallus
gallus]
Length = 348
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+E D + +RL+V SQ G
Sbjct: 66 NAIFKAFAMIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
Score = 35.0 bits (79), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGIPQSI 155
Query: 76 LKVIEEVLPALDE 88
++ ++++ + E
Sbjct: 156 IECVKQICVVMLE 168
>gi|58865460|ref|NP_001011945.1| poly(rC)-binding protein 3 [Rattus norvegicus]
gi|50927011|gb|AAH79196.1| Poly(rC) binding protein 3 [Rattus norvegicus]
Length = 319
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 4 KVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITG 63
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED + + K +RL+V SQ
Sbjct: 64 PTDAIFK-------AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQC 109
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 110 GSLIGKGGSKIKEIRESTGA 129
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 70/195 (35%), Gaps = 56/195 (28%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV----- 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 81 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDML 138
Query: 57 PDCPGPERILTIFAELENGLKVIEEVLPALDE---------IRQKYGKGRGGEDGGDGYN 107
P+ ER +TI + ++ ++++ + E R K GG Y
Sbjct: 139 PN--STERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYT 196
Query: 108 GGGVGGLGKDDYDIRLIVHQSQA------------------------------------G 131
G + D +L HQ G
Sbjct: 197 IQGQYAIPHPDQLTKL--HQLAMQQTPFPPLGQTNPAFPGLDASPPASTHELTIPNDLIG 254
Query: 132 CIIGKGGTKIKELRD 146
CIIG+ GTKI E+R
Sbjct: 255 CIIGRQGTKINEIRQ 269
>gi|417410186|gb|JAA51570.1| Putative polyc-binding alphacp-1, partial [Desmodus rotundus]
Length = 376
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 18 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 77
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+E D + +RL+V SQ G
Sbjct: 78 NAIFKAFAMIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGS 123
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 124 LIGKGGCKIKEIRESTGA 141
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 110 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGIPQSI 167
Query: 76 LKVIEEV-LPALDEIRQKYGKG 96
++ ++++ + L+ + Q KG
Sbjct: 168 IECVKQICVVMLETLSQSPPKG 189
>gi|344306639|ref|XP_003421993.1| PREDICTED: poly(rC)-binding protein 3 [Loxodonta africana]
Length = 396
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G + ++R + A + + + PERI+TI + K
Sbjct: 71 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFK--- 127
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
A I K+ ED + + K +RL+V SQ G +IGKGG+K
Sbjct: 128 ----AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQCGSLIGKGGSK 176
Query: 141 IKELRDTFDA 150
IKE+R++ A
Sbjct: 177 IKEIRESTGA 186
Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 138 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 190
>gi|322796009|gb|EFZ18633.1| hypothetical protein SINV_09712 [Solenopsis invicta]
Length = 440
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 67/130 (51%), Gaps = 7/130 (5%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RL++ + GS+IGK G + R R + A + + D PERI+T+ + K
Sbjct: 18 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSCPERIVTVTGPTNSIFKAFT 77
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
+ +E ++ +GG GG G + + +RLIV SQ G +IGKGG+K
Sbjct: 78 LICKKFEEWCSQFHDIQGGGAGGGGG-------VSRPPITLRLIVPASQCGSLIGKGGSK 130
Query: 141 IKELRDTFDA 150
IKE+R+ A
Sbjct: 131 IKEIREVTGA 140
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
+ LRL++P+ GS+IGKGGS I +R AS+ V
Sbjct: 109 ITLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQV 144
Score = 35.4 bits (80), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC 59
SN R + N+ + +P+ + G +IGKGG+ IA +R A + + +C
Sbjct: 359 SNTNRQQPAANNQTHEMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNC 409
>gi|119629730|gb|EAX09325.1| poly(rC) binding protein 3, isoform CRA_c [Homo sapiens]
Length = 370
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G + ++R + A + + + PERI+TI + K
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFK--- 102
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
A I K+ ED + + K +RL+V SQ G +IGKGG+K
Sbjct: 103 ----AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQCGSLIGKGGSK 151
Query: 141 IKELRDTFDA 150
IKE+R++ A
Sbjct: 152 IKEIRESTGA 161
Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 113 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
>gi|171906586|ref|NP_067543.2| poly(rC)-binding protein 3 [Mus musculus]
gi|296439279|sp|P57722.3|PCBP3_MOUSE RecName: Full=Poly(rC)-binding protein 3; AltName: Full=Alpha-CP3
gi|26348076|dbj|BAC37686.1| unnamed protein product [Mus musculus]
gi|148699881|gb|EDL31828.1| poly(rC) binding protein 3, isoform CRA_a [Mus musculus]
gi|148699882|gb|EDL31829.1| poly(rC) binding protein 3, isoform CRA_a [Mus musculus]
gi|148699883|gb|EDL31830.1| poly(rC) binding protein 3, isoform CRA_a [Mus musculus]
gi|148699888|gb|EDL31835.1| poly(rC) binding protein 3, isoform CRA_a [Mus musculus]
Length = 371
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 36 KVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITG 95
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED + + K +RL+V SQ
Sbjct: 96 PTDAIFK-------AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQC 141
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 142 GSLIGKGGSKIKEIRESTGA 161
Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 113 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
>gi|417399455|gb|JAA46731.1| Putative polyc-binding alphacp-1 [Desmodus rotundus]
Length = 351
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+E D + +RL+V SQ G
Sbjct: 66 NAIFKAFAMIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGIPQSI 155
Query: 76 LKVIEEV-LPALDEIRQKYGKG 96
++ ++++ + L+ + Q KG
Sbjct: 156 IECVKQICVVMLETLSQSPPKG 177
>gi|47220208|emb|CAF98973.1| unnamed protein product [Tetraodon nigroviridis]
Length = 345
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 14/127 (11%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ +RLL+ + GS+IGK G + ++R + A + + + PERI+TI + K
Sbjct: 15 TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDTIFK-- 72
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
A I K+ ED + + K +RL+V SQ G +IGKGG+
Sbjct: 73 -----AFAMIAYKF-----EEDIINSMSNS--LATSKPPVTLRLVVPASQCGSLIGKGGS 120
Query: 140 KIKELRD 146
KIKE+R+
Sbjct: 121 KIKEMRE 127
>gi|363747263|ref|XP_003643960.1| PREDICTED: poly(rC)-binding protein 2-like isoform 2 [Gallus
gallus]
Length = 349
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+E D + +RL+V SQ G
Sbjct: 66 NAIFKAFAMIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
Score = 35.0 bits (79), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGIPQSI 155
Query: 76 LKVIEEVLPALDE 88
++ ++++ + E
Sbjct: 156 IECVKQICVVMLE 168
>gi|344266063|ref|XP_003405100.1| PREDICTED: poly(rC)-binding protein 2-like isoform 1 [Loxodonta
africana]
Length = 360
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+E D + +RL+V SQ G
Sbjct: 66 NAIFKAFAMIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGIPQSI 155
Query: 76 LKVIEEVLPALDEI 89
++ ++++ + E+
Sbjct: 156 IECVKQICVVMLEV 169
>gi|148699887|gb|EDL31834.1| poly(rC) binding protein 3, isoform CRA_c [Mus musculus]
Length = 373
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 39 KVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITG 98
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED + + K +RL+V SQ
Sbjct: 99 PTDAIFK-------AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQC 144
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 145 GSLIGKGGSKIKEIRESTGA 164
Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 116 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 168
>gi|109065035|ref|XP_001099540.1| PREDICTED: poly(rC)-binding protein 3-like isoform 4 [Macaca
mulatta]
Length = 370
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G + ++R + A + + + PERI+TI + K
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFK--- 102
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
A I K+ ED + + K +RL+V SQ G +IGKGG+K
Sbjct: 103 ----AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQCGSLIGKGGSK 151
Query: 141 IKELRDTFDA 150
IKE+R++ A
Sbjct: 152 IKEIRESTGA 161
Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 113 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
>gi|354476790|ref|XP_003500606.1| PREDICTED: poly(rC)-binding protein 3 [Cricetulus griseus]
gi|149043674|gb|EDL97125.1| rCG61051, isoform CRA_a [Rattus norvegicus]
gi|149043675|gb|EDL97126.1| rCG61051, isoform CRA_a [Rattus norvegicus]
gi|149043676|gb|EDL97127.1| rCG61051, isoform CRA_a [Rattus norvegicus]
gi|149043677|gb|EDL97128.1| rCG61051, isoform CRA_a [Rattus norvegicus]
gi|344241934|gb|EGV98037.1| Poly(rC)-binding protein 3 [Cricetulus griseus]
Length = 371
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 36 KVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITG 95
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED + + K +RL+V SQ
Sbjct: 96 PTDAIFK-------AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQC 141
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 142 GSLIGKGGSKIKEIRESTGA 161
Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 113 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
>gi|384947752|gb|AFI37481.1| poly(rC)-binding protein 3 isoform 1 [Macaca mulatta]
Length = 370
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G + ++R + A + + + PERI+TI + K
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFK--- 102
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
A I K+ ED + + K +RL+V SQ G +IGKGG+K
Sbjct: 103 ----AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQCGSLIGKGGSK 151
Query: 141 IKELRDTFDA 150
IKE+R++ A
Sbjct: 152 IKEIRESTGA 161
Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 113 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
>gi|332026626|gb|EGI66735.1| RNA-binding protein Nova-1 [Acromyrmex echinatior]
Length = 514
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 19/139 (13%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTIFA 70
GG L++L+P AG++IGKGG IA+L+ D A V + PG ER+ I
Sbjct: 40 GGDGTYHLKVLVPGVAAGAIIGKGGDTIAQLQKDTGARVKMSKSHDFYPGTTERVCLITG 99
Query: 71 ELENGLKVIEEVLPALDEIRQK---YGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQ 127
++ ++V+E + +D+IR+K K D G + D ++++V
Sbjct: 100 TVDAIMEVMEFI---MDKIREKPDLTSKTTVDFDSGK--------ATAERDKQVKILVPN 148
Query: 128 SQAGCIIGKGGTKIKELRD 146
S AG IIGK G IK++++
Sbjct: 149 STAGMIIGKAGNYIKQIKE 167
Score = 37.4 bits (85), Expect = 2.3, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVP----DCPGPERILTIFAELENG 75
D ++++L+P+ AG +IGK G+ I +++ + + V + D ER +T+ E EN
Sbjct: 139 DKQVKILVPNSTAGMIIGKAGNYIKQIKEESGSYVQISQKAKDLSLQERCITVIGEKENN 198
Query: 76 LKVIEEVL 83
+ + +L
Sbjct: 199 HRALHMIL 206
>gi|392347468|ref|XP_003749842.1| PREDICTED: poly(rC)-binding protein 1 [Rattus norvegicus]
Length = 516
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 14/128 (10%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
+RLL+ + GS+IGK G ++ R+R + A + + + PERI+T+ K +
Sbjct: 176 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMI 235
Query: 83 LPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
+ L+E D + +RL+V +Q G +IGKGG KIK
Sbjct: 236 IDKLEE------------DINSSMTNSTAAS--RPPVTLRLVVPATQCGSLIGKGGCKIK 281
Query: 143 ELRDTFDA 150
E+R++ A
Sbjct: 282 EIRESTGA 289
Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFAELENGLK 77
V LRL++P+ GS+IGKGG I +R A V V P ER +TI ++ +
Sbjct: 258 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTE 317
Query: 78 VIEEVLPALDEIRQKYGKGR 97
++++ + E + +GR
Sbjct: 318 CVKQICLVMLETLSQSPQGR 337
>gi|327263854|ref|XP_003216732.1| PREDICTED: poly(rC)-binding protein 2-like isoform 2 [Anolis
carolinensis]
Length = 331
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+E D + +RL+V SQ G
Sbjct: 66 NAIFKAFAMIIDKLEE------------DISSSMTNSTASS--RPPVTLRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
Score = 35.4 bits (80), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGIPQSI 155
Query: 76 LKVIEEVLPALDE 88
++ ++++ + E
Sbjct: 156 IECVKQICVVMLE 168
>gi|307181420|gb|EFN69015.1| RNA-binding protein Nova-1 [Camponotus floridanus]
Length = 514
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 19/139 (13%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTIFA 70
GG L++L+P AG++IGKGG IA+L+ D A V + PG ER+ I
Sbjct: 40 GGDGTYHLKVLVPGVAAGAIIGKGGDTIAQLQKDTGARVKMSKSHDFYPGTTERVCLITG 99
Query: 71 ELENGLKVIEEVLPALDEIRQK---YGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQ 127
++ ++V+E + +D+IR+K K D G + D ++++V
Sbjct: 100 TVDAIMEVMEFI---MDKIREKPDLTSKTTVDFDSGK--------ATAERDKQVKILVPN 148
Query: 128 SQAGCIIGKGGTKIKELRD 146
S AG IIGK G IK++++
Sbjct: 149 STAGMIIGKAGNYIKQIKE 167
Score = 37.4 bits (85), Expect = 2.3, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVP----DCPGPERILTIFAELENG 75
D ++++L+P+ AG +IGK G+ I +++ + + V + D ER +T+ E EN
Sbjct: 139 DKQVKILVPNSTAGMIIGKAGNYIKQIKEESGSYVQISQKAKDLSLQERCITVIGEKENN 198
Query: 76 LKVIEEVL 83
+ + +L
Sbjct: 199 HRALHMIL 206
>gi|193248243|dbj|BAC04327.2| unnamed protein product [Homo sapiens]
Length = 319
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 4 KVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITG 63
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED + + K +RL+V SQ
Sbjct: 64 PTDAIFK-------AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQC 109
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 110 GSLIGKGGSKIKEIRESTGA 129
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 70/195 (35%), Gaps = 56/195 (28%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV----- 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 81 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDML 138
Query: 57 PDCPGPERILTIFAELENGLKVIEEVLPALDE---------IRQKYGKGRGGEDGGDGYN 107
P+ ER +TI + ++ ++++ + E R K GG Y
Sbjct: 139 PN--STERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYT 196
Query: 108 GGGVGGLGKDDYDIRLIVHQSQA------------------------------------G 131
G + D +L HQ G
Sbjct: 197 IQGQYAIPHPDQLTKL--HQLAMQQTPFPPLGQTNPAFPGLDASPPASTHELTIPNDLIG 254
Query: 132 CIIGKGGTKIKELRD 146
CIIG+ GTKI E+R
Sbjct: 255 CIIGRQGTKINEIRQ 269
>gi|147903491|ref|NP_001091320.1| poly(rC) binding protein 1 [Xenopus laevis]
gi|124481736|gb|AAI33216.1| LOC100037147 protein [Xenopus laevis]
Length = 221
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 15/137 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 4 KVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITG 63
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED + + K +RL+V SQ
Sbjct: 64 PTDAIFK-------AFAMIAYKFE-----EDIINSMSNST--ATSKPPVTLRLVVPASQC 109
Query: 131 GCIIGKGGTKIKELRDT 147
G +IGKGG+KIKE+R++
Sbjct: 110 GSLIGKGGSKIKEIRES 126
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E I +SN P V LRL++P+ GS+IGKGGS I +R + V V
Sbjct: 81 EDIINSMSNSTATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGSQVQV 133
>gi|332256670|ref|XP_003277439.1| PREDICTED: poly(rC)-binding protein 3 [Nomascus leucogenys]
Length = 393
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G + ++R + A + + + PERI+TI + K
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFK--- 102
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
A I K+ ED + + K +RL+V SQ G +IGKGG+K
Sbjct: 103 ----AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQCGSLIGKGGSK 151
Query: 141 IKELRDTFDA 150
IKE+R++ A
Sbjct: 152 IKEIRESTGA 161
Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 113 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
>gi|410969851|ref|XP_003991405.1| PREDICTED: poly(rC)-binding protein 3 [Felis catus]
Length = 361
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 4 KVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITG 63
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED + + K +RL+V SQ
Sbjct: 64 PTDAIFK-------AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQC 109
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 110 GSLIGKGGSKIKEIRESTGA 129
Score = 38.9 bits (89), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 81 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
>gi|392340090|ref|XP_002726454.2| PREDICTED: poly(rC)-binding protein 1, partial [Rattus norvegicus]
Length = 365
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G ++ R+R + A + + + PERI+T+ K
Sbjct: 23 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFA 82
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
++ L+E D + +RL+V +Q G +IGKGG K
Sbjct: 83 MIIDKLEE------------DINSSMTNSTAAS--RPPVTLRLVVPATQCGSLIGKGGCK 128
Query: 141 IKELRDTFDA 150
IKE+R++ A
Sbjct: 129 IKEIRESTGA 138
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 107 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGVPQSV 164
Query: 76 LKVIEEVLPALDEIRQKYGKGR 97
+ ++++ + E + +GR
Sbjct: 165 TECVKQICLVMLETLSQSPQGR 186
>gi|193083110|ref|NP_001122384.1| poly(rC)-binding protein 2 isoform e [Homo sapiens]
gi|291389255|ref|XP_002711064.1| PREDICTED: poly(rC) binding protein 2-like isoform 1 [Oryctolagus
cuniculus]
gi|348581079|ref|XP_003476305.1| PREDICTED: poly(rC)-binding protein 2 isoform 3 [Cavia porcellus]
gi|184186908|gb|ACC69194.1| poly(rC) binding protein 2 [Mus musculus]
gi|208967068|dbj|BAG73548.1| poly(rC) binding protein 2 [synthetic construct]
Length = 361
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+E D + +RL+V SQ G
Sbjct: 66 NAIFKAFAMIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
>gi|115495373|ref|NP_001069752.1| poly(rC)-binding protein 3 [Bos taurus]
gi|301767382|ref|XP_002919105.1| PREDICTED: poly(rC)-binding protein 3-like [Ailuropoda melanoleuca]
gi|359323604|ref|XP_848733.3| PREDICTED: poly(rC)-binding protein 3 [Canis lupus familiaris]
gi|109659150|gb|AAI18167.1| Poly(rC) binding protein 3 [Bos taurus]
gi|296490840|tpg|DAA32953.1| TPA: poly(rC) binding protein 3 [Bos taurus]
Length = 361
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 4 KVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITG 63
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED + + K +RL+V SQ
Sbjct: 64 PTDAIFK-------AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQC 109
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 110 GSLIGKGGSKIKEIRESTGA 129
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 81 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
>gi|14141168|ref|NP_005007.2| poly(rC)-binding protein 2 isoform a [Homo sapiens]
gi|47940610|gb|AAH71942.1| Poly(rC) binding protein 2 [Homo sapiens]
gi|119617115|gb|EAW96709.1| poly(rC) binding protein 2, isoform CRA_d [Homo sapiens]
Length = 366
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+E D + +RL+V SQ G
Sbjct: 66 NAIFKAFAMIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGIPQSI 155
Query: 76 LKVIEEV-LPALDEIRQKYGKG 96
++ ++++ + L+ + Q KG
Sbjct: 156 IECVKQICVVMLETLSQSPPKG 177
>gi|61557337|ref|NP_001013241.1| poly(rC)-binding protein 2 [Rattus norvegicus]
gi|193083108|ref|NP_001122383.1| poly(rC)-binding protein 2 isoform d [Homo sapiens]
gi|6707736|sp|Q15366.1|PCBP2_HUMAN RecName: Full=Poly(rC)-binding protein 2; AltName: Full=Alpha-CP2;
AltName: Full=Heterogeneous nuclear ribonucleoprotein
E2; Short=hnRNP E2
gi|460773|emb|CAA55015.1| hnRNP-E2 [Homo sapiens]
gi|50926841|gb|AAH78906.1| Poly(rC) binding protein 2 [Rattus norvegicus]
gi|119617116|gb|EAW96710.1| poly(rC) binding protein 2, isoform CRA_e [Homo sapiens]
Length = 365
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+E D + +RL+V SQ G
Sbjct: 66 NAIFKAFAMIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGIPQSI 155
Query: 76 LKVIEEV-LPALDEIRQKYGKG 96
++ ++++ + L+ + Q KG
Sbjct: 156 IECVKQICVVMLETLSQSPPKG 177
>gi|1360003|emb|CAA66619.1| nuclear poly(C)-binding protein, splicevariant E [Mus musculus]
Length = 349
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+E D + +RL+V SQ G
Sbjct: 66 NAIFKAFAMIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
>gi|390478281|ref|XP_002761548.2| PREDICTED: poly(rC)-binding protein 3 [Callithrix jacchus]
Length = 393
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G + ++R + A + + + PERI+TI + K
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFK--- 102
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
A I K+ ED + + K +RL+V SQ G +IGKGG+K
Sbjct: 103 ----AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQCGSLIGKGGSK 151
Query: 141 IKELRDTFDA 150
IKE+R++ A
Sbjct: 152 IKEIRESTGA 161
Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 113 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
>gi|355560220|gb|EHH16906.1| hypothetical protein EGK_13160 [Macaca mulatta]
Length = 361
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 4 KVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITG 63
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED + + K +RL+V SQ
Sbjct: 64 PTDAIFK-------AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQC 109
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 110 GSLIGKGGSKIKEIRESTGA 129
Score = 38.9 bits (89), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 81 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
>gi|354490191|ref|XP_003507243.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Cricetulus
griseus]
gi|344239259|gb|EGV95362.1| Poly(rC)-binding protein 2 [Cricetulus griseus]
Length = 362
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+E D + +RL+V SQ G
Sbjct: 66 NAIFKAFAMIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
>gi|14141166|ref|NP_114366.1| poly(rC)-binding protein 2 isoform b [Homo sapiens]
gi|157041229|ref|NP_001096635.1| poly(rC)-binding protein 2 isoform 1 [Mus musculus]
gi|73996203|ref|XP_534789.2| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Canis lupus
familiaris]
gi|149714829|ref|XP_001504573.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Equus caballus]
gi|297692024|ref|XP_002823365.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Pongo abelii]
gi|301775803|ref|XP_002923308.1| PREDICTED: poly(rC)-binding protein 2-like [Ailuropoda melanoleuca]
gi|332206039|ref|XP_003252097.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Nomascus
leucogenys]
gi|332839234|ref|XP_003313706.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Pan troglodytes]
gi|395541533|ref|XP_003772697.1| PREDICTED: poly(rC)-binding protein 2 [Sarcophilus harrisii]
gi|403296804|ref|XP_003939285.1| PREDICTED: poly(rC)-binding protein 2 [Saimiri boliviensis
boliviensis]
gi|410964553|ref|XP_003988818.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Felis catus]
gi|426224368|ref|XP_004006343.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Ovis aries]
gi|426372753|ref|XP_004053282.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Gorilla gorilla
gorilla]
gi|2500577|sp|Q61990.1|PCBP2_MOUSE RecName: Full=Poly(rC)-binding protein 2; AltName: Full=Alpha-CP2;
AltName: Full=CTBP; Short=CBP; AltName: Full=Putative
heterogeneous nuclear ribonucleoprotein X; Short=hnRNP X
gi|436894|gb|AAA03705.1| nucleic acid binding protein [Mus musculus]
gi|12654635|gb|AAH01155.1| Poly(rC) binding protein 2 [Homo sapiens]
gi|13172240|gb|AAK14059.1| alpha-CP2 [Mus musculus]
gi|50925529|gb|AAH78909.1| Pcbp2 protein [Rattus norvegicus]
gi|119617113|gb|EAW96707.1| poly(rC) binding protein 2, isoform CRA_b [Homo sapiens]
gi|148672029|gb|EDL03976.1| poly(rC) binding protein 2, isoform CRA_c [Mus musculus]
gi|149031920|gb|EDL86832.1| rCG50739, isoform CRA_a [Rattus norvegicus]
gi|158257714|dbj|BAF84830.1| unnamed protein product [Homo sapiens]
Length = 362
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+E D + +RL+V SQ G
Sbjct: 66 NAIFKAFAMIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
>gi|440894425|gb|ELR46887.1| Poly(rC)-binding protein 3 [Bos grunniens mutus]
Length = 374
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 39 KVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITG 98
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED + + K +RL+V SQ
Sbjct: 99 PTDAIFK-------AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQC 144
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 145 GSLIGKGGSKIKEIRESTGA 164
Score = 38.9 bits (89), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 116 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 168
>gi|410355313|gb|JAA44260.1| poly(rC) binding protein 1 [Pan troglodytes]
Length = 356
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G ++ R+R + A + + + PERI+T+ K
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFA 73
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
++ L+E D + +RL+V +Q G +IGKGG K
Sbjct: 74 MIIDKLEE------------DINSSMTNSTAAS--RPPVTLRLVVPATQCGSLIGKGGCK 119
Query: 141 IKELRDTFDA 150
IKE+R++ A
Sbjct: 120 IKEIRESTGA 129
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGVPQSV 155
Query: 76 LKVIEEVLPALDEIRQKYGKGR 97
+ ++++ + E + +GR
Sbjct: 156 TECVKQICLVMLETLSQSPQGR 177
>gi|119629731|gb|EAX09326.1| poly(rC) binding protein 3, isoform CRA_d [Homo sapiens]
Length = 393
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G + ++R + A + + + PERI+TI + K
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFK--- 102
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
A I K+ ED + + K +RL+V SQ G +IGKGG+K
Sbjct: 103 ----AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQCGSLIGKGGSK 151
Query: 141 IKELRDTFDA 150
IKE+R++ A
Sbjct: 152 IKEIRESTGA 161
Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 113 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
>gi|347300276|ref|NP_001231441.1| poly(rC) binding protein 2 [Sus scrofa]
gi|417399505|gb|JAA46755.1| Putative polyc-binding alphacp-1 [Desmodus rotundus]
Length = 353
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+E D + +RL+V SQ G
Sbjct: 66 NAIFKAFAMIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGIPQSI 155
Query: 76 LKVIEEV-LPALDEIRQKYGKG 96
++ ++++ + L+ + Q KG
Sbjct: 156 IECVKQICVVMLETLSQSPPKG 177
>gi|311252459|ref|XP_003125105.1| PREDICTED: poly(rC)-binding protein 1-like [Sus scrofa]
Length = 356
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G ++ R+R + A + + + PERI+T+ K
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFA 73
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
++ L+E D + +RL+V +Q G +IGKGG K
Sbjct: 74 MIIDKLEE------------DINSSMTNSTAAS--RPPVTLRLVVPATQCGSLIGKGGCK 119
Query: 141 IKELRDTFDA 150
IKE+R++ A
Sbjct: 120 IKEIRESTGA 129
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGVPQSV 155
Query: 76 LKVIEEVLPALDEIRQKYGKGR 97
+ ++++ + E + +GR
Sbjct: 156 TECVKQICLVMLETLSQSPQGR 177
>gi|6754994|ref|NP_035995.1| poly(rC)-binding protein 1 [Mus musculus]
gi|62751650|ref|NP_001015565.1| poly(rC)-binding protein 1 [Bos taurus]
gi|126723096|ref|NP_001075593.1| poly(rC)-binding protein 1 [Oryctolagus cuniculus]
gi|222352151|ref|NP_006187.2| poly(rC)-binding protein 1 [Homo sapiens]
gi|379642963|ref|NP_001243850.1| poly(rC)-binding protein 1 [Equus caballus]
gi|114577924|ref|XP_515530.2| PREDICTED: poly(rC)-binding protein 1 isoform 3 [Pan troglodytes]
gi|296223628|ref|XP_002757702.1| PREDICTED: poly(rC)-binding protein 1-like [Callithrix jacchus]
gi|297667414|ref|XP_002811975.1| PREDICTED: poly(rC)-binding protein 1 isoform 1 [Pongo abelii]
gi|301758216|ref|XP_002914950.1| PREDICTED: poly(rC)-binding protein 1-like [Ailuropoda melanoleuca]
gi|332226765|ref|XP_003262561.1| PREDICTED: poly(rC)-binding protein 1 [Nomascus leucogenys]
gi|348566575|ref|XP_003469077.1| PREDICTED: poly(rC)-binding protein 1-like [Cavia porcellus]
gi|354491739|ref|XP_003508012.1| PREDICTED: poly(rC)-binding protein 1-like [Cricetulus griseus]
gi|395731716|ref|XP_003775951.1| PREDICTED: poly(rC)-binding protein 1 isoform 2 [Pongo abelii]
gi|395841306|ref|XP_003793486.1| PREDICTED: poly(rC)-binding protein 1 [Otolemur garnettii]
gi|402891162|ref|XP_003908824.1| PREDICTED: poly(rC)-binding protein 1 [Papio anubis]
gi|410954989|ref|XP_003984141.1| PREDICTED: poly(rC)-binding protein 1 [Felis catus]
gi|426223390|ref|XP_004005858.1| PREDICTED: poly(rC)-binding protein 1 [Ovis aries]
gi|426335835|ref|XP_004029412.1| PREDICTED: poly(rC)-binding protein 1 [Gorilla gorilla gorilla]
gi|12230408|sp|O19048.1|PCBP1_RABIT RecName: Full=Poly(rC)-binding protein 1; AltName: Full=Alpha-CP1;
AltName: Full=Heterogeneous nuclear ribonucleoprotein
E1; Short=hnRNP E1
gi|42559420|sp|P60335.1|PCBP1_MOUSE RecName: Full=Poly(rC)-binding protein 1; AltName: Full=Alpha-CP1;
AltName: Full=Heterogeneous nuclear ribonucleoprotein
E1; Short=hnRNP E1
gi|42560548|sp|Q15365.2|PCBP1_HUMAN RecName: Full=Poly(rC)-binding protein 1; AltName: Full=Alpha-CP1;
AltName: Full=Heterogeneous nuclear ribonucleoprotein
E1; Short=hnRNP E1; AltName: Full=Nucleic acid-binding
protein SUB2.3
gi|75040221|sp|Q5E9A3.1|PCBP1_BOVIN RecName: Full=Poly(rC)-binding protein 1; AltName: Full=Alpha-CP1
gi|2134737|pir||S58529 alpha-complex protein 1 - human
gi|5805273|gb|AAD51920.1|AF139894_1 RNA-binding protein alpha-CP1 [Mus musculus]
gi|5805275|gb|AAD51921.1|AF139895_1 RNA-binding protein alpha-CP1 [Mus musculus]
gi|1215671|gb|AAA91317.1| alpha-CP1 [Homo sapiens]
gi|2644966|emb|CAA05814.1| hnRNP-E1 protein [Oryctolagus cuniculus]
gi|13435897|gb|AAH04793.1| Poly(rC) binding protein 1 [Mus musculus]
gi|24980783|gb|AAH39742.1| Poly(rC) binding protein 1 [Homo sapiens]
gi|47124405|gb|AAH69915.1| Poly(rC) binding protein 1 [Mus musculus]
gi|59858399|gb|AAX09034.1| poly(rC) binding protein 1 [Bos taurus]
gi|62702265|gb|AAX93191.1| unknown [Homo sapiens]
gi|119620240|gb|EAW99834.1| poly(rC) binding protein 1 [Homo sapiens]
gi|148666767|gb|EDK99183.1| mCG130511 [Mus musculus]
gi|189054893|dbj|BAG36897.1| unnamed protein product [Homo sapiens]
gi|208968661|dbj|BAG74169.1| poly(rC) binding protein 1 [synthetic construct]
gi|281346699|gb|EFB22283.1| hypothetical protein PANDA_002891 [Ailuropoda melanoleuca]
gi|296482414|tpg|DAA24529.1| TPA: poly(rC)-binding protein 1 [Bos taurus]
gi|312151908|gb|ADQ32466.1| poly(rC) binding protein 1 [synthetic construct]
gi|344250809|gb|EGW06913.1| Poly(rC)-binding protein 1 [Cricetulus griseus]
gi|355565760|gb|EHH22189.1| hypothetical protein EGK_05412 [Macaca mulatta]
gi|355751386|gb|EHH55641.1| hypothetical protein EGM_04885 [Macaca fascicularis]
gi|380813262|gb|AFE78505.1| poly(rC)-binding protein 1 [Macaca mulatta]
gi|380813264|gb|AFE78506.1| poly(rC)-binding protein 1 [Macaca mulatta]
gi|383418769|gb|AFH32598.1| poly(rC)-binding protein 1 [Macaca mulatta]
gi|384940310|gb|AFI33760.1| poly(rC)-binding protein 1 [Macaca mulatta]
gi|384947378|gb|AFI37294.1| poly(rC)-binding protein 1 [Macaca mulatta]
gi|410262902|gb|JAA19417.1| poly(rC) binding protein 1 [Pan troglodytes]
gi|431912608|gb|ELK14626.1| Poly(rC)-binding protein 1 [Pteropus alecto]
gi|444723406|gb|ELW64063.1| Poly(rC)-binding protein 1 [Tupaia chinensis]
Length = 356
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G ++ R+R + A + + + PERI+T+ K
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFA 73
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
++ L+E D + +RL+V +Q G +IGKGG K
Sbjct: 74 MIIDKLEE------------DINSSMTNSTAAS--RPPVTLRLVVPATQCGSLIGKGGCK 119
Query: 141 IKELRDTFDA 150
IKE+R++ A
Sbjct: 120 IKEIRESTGA 129
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGVPQSV 155
Query: 76 LKVIEEVLPALDEIRQKYGKGR 97
+ ++++ + E + +GR
Sbjct: 156 TECVKQICLVMLETLSQSPQGR 177
>gi|56566054|gb|AAV98363.1| poly(rC) binding protein 3 [Homo sapiens]
Length = 361
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 4 KVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITG 63
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED + + K +RL+V SQ
Sbjct: 64 PTDAIFK-------AFAMIAYKFE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQC 109
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 110 GSLIGKGGSKIKEIRESTGA 129
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 81 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
>gi|384947380|gb|AFI37295.1| poly(rC)-binding protein 1 [Macaca mulatta]
Length = 358
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G ++ R+R + A + + + PERI+T+ K
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFA 73
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
++ L+E D + +RL+V +Q G +IGKGG K
Sbjct: 74 MIIDKLEE------------DINSSMTNSTAAS--RPPVTLRLVVPATQCGSLIGKGGCK 119
Query: 141 IKELRDTFDA 150
IKE+R++ A
Sbjct: 120 IKEIRESTGA 129
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGVPQSV 155
Query: 76 LKVIEEVLPALDEIRQKYGKGR 97
+ ++++ + E + +GR
Sbjct: 156 TECVKQICLVMLETLSQSPQGR 177
>gi|351714348|gb|EHB17267.1| Poly(rC)-binding protein 1 [Heterocephalus glaber]
Length = 355
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G ++ R+R + A + + + PERI+T+ K
Sbjct: 13 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFA 72
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
++ L+E D + +RL+V +Q G +IGKGG K
Sbjct: 73 MIIDKLEE------------DINSSMTNSTAAS--RPPVTLRLVVPATQCGSLIGKGGCK 118
Query: 141 IKELRDTFDA 150
IKE+R++ A
Sbjct: 119 IKEIRESTGA 128
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 97 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGVPQSV 154
Query: 76 LKVIEEVLPALDEIRQKYGKGR 97
+ ++++ + E + +GR
Sbjct: 155 TECVKQICLVMLETLSQSPQGR 176
>gi|387017714|gb|AFJ50975.1| Poly(rC)-binding protein 2-like [Crotalus adamanteus]
Length = 347
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+E D + +RL+V SQ G
Sbjct: 66 NAIFKAFAMIIDKLEE------------DISSSMTNSTASS--RPPVTLRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
Score = 35.0 bits (79), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGIPQSI 155
Query: 76 LKVIEEVLPALDE 88
++ ++++ + E
Sbjct: 156 IECVKQICVVMLE 168
>gi|297849822|ref|XP_002892792.1| hypothetical protein ARALYDRAFT_471578 [Arabidopsis lyrata subsp.
lyrata]
gi|297338634|gb|EFH69051.1| hypothetical protein ARALYDRAFT_471578 [Arabidopsis lyrata subsp.
lyrata]
Length = 477
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 46/139 (33%), Positives = 75/139 (53%), Gaps = 7/139 (5%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PG-PERILTIFA---E 71
G + R L P + GS+IGKGG ++R++ K+++ + + PG ER++TI++ E
Sbjct: 40 GSEETVYRYLCPVKKTGSIIGKGGDIAKQIRSETKSNMRINEALPGCEERVVTIYSTNEE 99
Query: 72 LENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAG 131
L + E V PALD + + + D DG + +G K +R++V Q G
Sbjct: 100 LNHFGDDGELVCPALDALFKVHDMVVADIDHDDGNDDDDLGE--KQTVTVRMLVPSDQIG 157
Query: 132 CIIGKGGTKIKELRDTFDA 150
C+IGKGG I+ LR+ +A
Sbjct: 158 CVIGKGGQVIQNLRNDTNA 176
Score = 40.4 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDC 59
G V +R+L+PS G VIGKGG I LRND A + V P C
Sbjct: 140 GEKQTVTVRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVIKDHLPSC 188
>gi|440907813|gb|ELR57910.1| Poly(rC)-binding protein 1 [Bos grunniens mutus]
Length = 356
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G ++ R+R + A + + + PERI+T+ K
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFA 73
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
++ L+E D + +RL+V +Q G +IGKGG K
Sbjct: 74 MIIDKLEE------------DINSSMTNSTAAS--RPPVTLRLVVPATQCGSLIGKGGCK 119
Query: 141 IKELRDTFDA 150
IKE+R++ A
Sbjct: 120 IKEIRESTGA 129
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGVPQSV 155
Query: 76 LKVIEEVLPALDEIRQKYGKGR 97
+ ++++ + E + +GR
Sbjct: 156 TECVKQICLVMLETLSQSPQGR 177
>gi|77736367|ref|NP_001029883.1| poly(rC)-binding protein 2 [Bos taurus]
gi|157057549|ref|NP_035172.2| poly(rC)-binding protein 2 isoform 2 [Mus musculus]
gi|291389257|ref|XP_002711065.1| PREDICTED: poly(rC) binding protein 2-like isoform 2 [Oryctolagus
cuniculus]
gi|348581077|ref|XP_003476304.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Cavia porcellus]
gi|426224370|ref|XP_004006344.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Ovis aries]
gi|74268197|gb|AAI03398.1| Poly(rC) binding protein 2 [Bos taurus]
gi|119617114|gb|EAW96708.1| poly(rC) binding protein 2, isoform CRA_c [Homo sapiens]
gi|148672028|gb|EDL03975.1| poly(rC) binding protein 2, isoform CRA_b [Mus musculus]
gi|149031923|gb|EDL86835.1| rCG50739, isoform CRA_d [Rattus norvegicus]
gi|296487920|tpg|DAA30033.1| TPA: poly(rC) binding protein 2 [Bos taurus]
Length = 349
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+E D + +RL+V SQ G
Sbjct: 66 NAIFKAFAMIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
>gi|126345443|ref|XP_001362482.1| PREDICTED: poly(rC)-binding protein 2-like isoform 1 [Monodelphis
domestica]
gi|351706147|gb|EHB09066.1| Poly(rC)-binding protein 2 [Heterocephalus glaber]
gi|440900676|gb|ELR51755.1| Poly(rC)-binding protein 2, partial [Bos grunniens mutus]
Length = 351
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+E D + +RL+V SQ G
Sbjct: 66 NAIFKAFAMIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
>gi|57093423|ref|XP_538537.1| PREDICTED: poly(rC)-binding protein 1 isoform 1 [Canis lupus
familiaris]
Length = 356
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G ++ R+R + A + + + PERI+T+ K
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFA 73
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
++ L+E D + +RL+V +Q G +IGKGG K
Sbjct: 74 MIIDKLEE------------DINSSMTNSTAAS--RPPVTLRLVVPATQCGSLIGKGGCK 119
Query: 141 IKELRDTFDA 150
IKE+R++ A
Sbjct: 120 IKEIRESTGA 129
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGVPQSV 155
Query: 76 LKVIEEVLPALDEIRQKYGKGR 97
+ ++++ + E + +GR
Sbjct: 156 TECVKQICLVMLETLSQSPQGR 177
>gi|460771|emb|CAA55016.1| hnRNP-E1 [Homo sapiens]
Length = 356
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G ++ R+R + A + + + PERI+T+ K
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFA 73
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
++ L+E D + +RL+V +Q G +IGKGG K
Sbjct: 74 MIIDKLEE------------DINSSMTNSTAAS--RPPVTLRLVVPATQCGSLIGKGGCK 119
Query: 141 IKELRDTFDA 150
IKE+R++ A
Sbjct: 120 IKEIRESTGA 129
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGVPQSV 155
Query: 76 LKVIEEVLPALDEIRQKYGKGR 97
+ ++++ + E + +GR
Sbjct: 156 TECVKQICLVMLETLSQSPQGR 177
>gi|410227970|gb|JAA11204.1| poly(rC) binding protein 1 [Pan troglodytes]
Length = 356
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G ++ R+R + A + + + PERI+T+ K
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFA 73
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
++ L+E D + +RL+V +Q G +IGKGG K
Sbjct: 74 MIIDKLEE------------DINSSMTNSTAAS--RPPVTLRLVVPATQCGSLIGKGGCK 119
Query: 141 IKELRDTFDA 150
IKE+R++ A
Sbjct: 120 IKEIRESTGA 129
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGVPQSV 155
Query: 76 LKVIEEVLPALDEIRQKYGKGR 97
+ ++++ + E + +GR
Sbjct: 156 TECVKQICLVMLETLSQSPQGR 177
>gi|354490195|ref|XP_003507245.1| PREDICTED: poly(rC)-binding protein 2 isoform 3 [Cricetulus
griseus]
Length = 349
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+E D + +RL+V SQ G
Sbjct: 66 NAIFKAFAMIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
>gi|397521888|ref|XP_003831016.1| PREDICTED: poly(rC)-binding protein 1 [Pan paniscus]
Length = 455
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 14/128 (10%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
+RLL+ + GS+IGK G ++ R+R + A + + + PERI+T+ K +
Sbjct: 115 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMI 174
Query: 83 LPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
+ L+E D + +RL+V +Q G +IGKGG KIK
Sbjct: 175 IDKLEE------------DINSSMTNSTAAS--RPPVTLRLVVPATQCGSLIGKGGCKIK 220
Query: 143 ELRDTFDA 150
E+R++ A
Sbjct: 221 EIRESTGA 228
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFAELENGLK 77
V LRL++P+ GS+IGKGG I +R A V V P ER +TI ++ +
Sbjct: 197 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTE 256
Query: 78 VIEEVLPALDEIRQKYGKGR 97
++++ + E + +GR
Sbjct: 257 CVKQICLVMLETLSQSPQGR 276
>gi|47209955|emb|CAF90944.1| unnamed protein product [Tetraodon nigroviridis]
Length = 164
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Query: 27 IPSRV--AGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLP 84
+PS + GS+IGK G + ++R + A + + + PERI+TI E +
Sbjct: 1 LPSHLQEVGSIIGKKGETVKKIREESGARINISEGSSPERIVTITG-------ATEAIFR 53
Query: 85 ALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKEL 144
I QK+ ED + V K +RL+ SQ G +IGKGG+KIKE+
Sbjct: 54 TFAMIAQKFE-----EDINAAMSNSNV--TSKPPVTLRLVFPGSQCGSLIGKGGSKIKEI 106
Query: 145 RDTFDA 150
R+T A
Sbjct: 107 RETTGA 112
>gi|351712813|gb|EHB15732.1| Poly(rC)-binding protein 1 [Heterocephalus glaber]
Length = 355
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G ++ R+R + A + + + PERI+T+ K
Sbjct: 13 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFA 72
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
++ L+E D + +RL+V +Q G +IGKGG K
Sbjct: 73 MIIDKLEE------------DINSSMTNSTAAS--RPPVTLRLVVPATQCGSLIGKGGCK 118
Query: 141 IKELRDTFDA 150
IKE+R++ A
Sbjct: 119 IKEIRESTGA 128
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 97 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGVPQSV 154
Query: 76 LKVIEEVLPALDEIRQKYGKGR 97
+ ++++ + E + +GR
Sbjct: 155 TECVKQICLVMLETLSQSPQGR 176
>gi|327263852|ref|XP_003216731.1| PREDICTED: poly(rC)-binding protein 2-like isoform 1 [Anolis
carolinensis]
Length = 360
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+E D + +RL+V SQ G
Sbjct: 66 NAIFKAFAMIIDKLEE------------DISSSMTNSTASS--RPPVTLRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
Score = 35.0 bits (79), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGIPQSI 155
Query: 76 LKVIEEVLPALDE 88
++ ++++ + E
Sbjct: 156 IECVKQICVVMLE 168
>gi|307213191|gb|EFN88688.1| RNA-binding protein Nova-1 [Harpegnathos saltator]
Length = 514
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 13/136 (9%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTIFA 70
GG L++L+P AG++IGKGG IA+L+ D A V + PG ER+ I
Sbjct: 40 GGDGTYHLKVLVPGVAAGAIIGKGGDTIAQLQKDTGARVKMSKSHDFYPGTTERVCLITG 99
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+E + V++ ++ + E K D G + D ++++V S A
Sbjct: 100 SVEAIMAVMDFIMEKIREKPDLTSKTTVDFDSGK--------ATAERDKQVKILVPNSTA 151
Query: 131 GCIIGKGGTKIKELRD 146
G IIGK G IK++++
Sbjct: 152 GMIIGKAGNYIKQIKE 167
Score = 35.4 bits (80), Expect = 7.8, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVP----DCPGPERILTIFAELENG 75
D ++++L+P+ AG +IGK G+ I +++ + + V + D ER +T+ E EN
Sbjct: 139 DKQVKILVPNSTAGMIIGKAGNYIKQIKEESGSYVQISQKAKDLSLQERCITVIGEKENN 198
Query: 76 LKVIEEVL 83
+ +L
Sbjct: 199 RNALLMIL 206
>gi|417410101|gb|JAA51528.1| Putative polyc-binding alphacp-1, partial [Desmodus rotundus]
Length = 365
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G ++ R+R + A + + + PERI+T+ K
Sbjct: 23 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFA 82
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
++ L+E D + +RL+V +Q G +IGKGG K
Sbjct: 83 MIIDKLEE------------DINSSMTNSTAAS--RPPVTLRLVVPATQCGSLIGKGGCK 128
Query: 141 IKELRDTFDA 150
IKE+R++ A
Sbjct: 129 IKEIRESTGA 138
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 107 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGVPQSV 164
Query: 76 LKVIEEVLPALDEIRQKYGKGR 97
+ ++++ + E + +GR
Sbjct: 165 TECVKQICLVMLETLSQSPQGR 186
>gi|402590061|gb|EJW83992.1| hypothetical protein WUBG_05097, partial [Wuchereria bancrofti]
Length = 210
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 55/118 (46%), Gaps = 17/118 (14%)
Query: 33 GSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEIRQK 92
GS+IGK G +I +R+ A + + D PERI+TI + K + L + Q
Sbjct: 3 GSIIGKRGDHIKLIRDQSGAKINISDGSCPERIVTITGSIGTINKAFGMICAKLQQDLQA 62
Query: 93 YGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
+ K +RLIV +Q GCIIGKGGTKIKE+R+ A
Sbjct: 63 LP-----------------NSIPKPPITMRLIVPATQCGCIIGKGGTKIKEIREATGA 103
>gi|126345445|ref|XP_001362564.1| PREDICTED: poly(rC)-binding protein 2-like isoform 2 [Monodelphis
domestica]
Length = 338
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+E D + +RL+V SQ G
Sbjct: 66 NAIFKAFAMIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
>gi|62087230|dbj|BAD92062.1| poly(rC)-binding protein 2 isoform b variant [Homo sapiens]
Length = 373
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 18 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 77
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+E D + +RL+V SQ G
Sbjct: 78 NAIFKAFAMIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGS 123
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 124 LIGKGGCKIKEIRESTGA 141
>gi|403260495|ref|XP_003922705.1| PREDICTED: poly(rC)-binding protein 1 [Saimiri boliviensis
boliviensis]
Length = 302
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G ++ R+R + A + + + PERI+T+ K
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFA 73
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
++ L+E D + +RL+V +Q G +IGKGG K
Sbjct: 74 MIIDKLEE------------DINSSMTNSTAAS--RPPVTLRLVVPATQCGSLIGKGGCK 119
Query: 141 IKELRDTFDA 150
IKE+R++ A
Sbjct: 120 IKEIRESTGA 129
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGVPQSV 155
Query: 76 LKVIEEVLPALDEIRQKYGKGR 97
+ ++++ + E + +GR
Sbjct: 156 TECVKQICLVMLETLSQSPQGR 177
>gi|196049606|pdb|2JZX|A Chain A, Pcbp2 Kh1-Kh2 Domains
Length = 160
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 14/131 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
+ +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+ K
Sbjct: 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAF 63
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
++ L+E D + +RL+V SQ G +IGKGG
Sbjct: 64 AMIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGSLIGKGGC 109
Query: 140 KIKELRDTFDA 150
KIKE+R++ A
Sbjct: 110 KIKEIRESTGA 120
>gi|240992417|ref|XP_002404460.1| transformation upregulated nuclear protein, putative [Ixodes
scapularis]
gi|215491567|gb|EEC01208.1| transformation upregulated nuclear protein, putative [Ixodes
scapularis]
Length = 316
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 18/82 (21%)
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLI 124
IL+I A+L+ +++ ++P LD+ Q G+ G+ + ++RL+
Sbjct: 31 ILSIVADLDTLGEILASIIPKLDDFAQHTGQN------------------GRSESEMRLL 72
Query: 125 VHQSQAGCIIGKGGTKIKELRD 146
+HQS AGC+IG+ G +IKELR+
Sbjct: 73 MHQSHAGCVIGRAGCRIKELRE 94
>gi|392884376|gb|AFM91020.1| poly(rC) binding protein 3, isoform CRAb [Callorhinchus milii]
Length = 349
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 68/140 (48%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 4 KVTEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMRVESGARINISEGNCPERIVTITG 63
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED + K +RL+V SQ
Sbjct: 64 PTDAIFK-------AFAMIAFKFE-----EDINNSMTNSP--ATSKPPVTLRLVVPASQC 109
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 110 GSLIGKGGSKIKEIRESTGA 129
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
>gi|291414465|ref|XP_002723480.1| PREDICTED: poly(rC) binding protein 2-like [Oryctolagus cuniculus]
Length = 319
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 68/140 (48%), Gaps = 15/140 (10%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
K GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 4 KVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITG 63
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ K A I K+ ED + K +RL+V SQ
Sbjct: 64 PTDAIFK-------AFAMIAYKF-----EEDIISSMSNS--PATSKPPVTLRLVVPASQC 109
Query: 131 GCIIGKGGTKIKELRDTFDA 150
G +IGKGG+KIKE+R++ A
Sbjct: 110 GSLIGKGGSKIKEIRESTGA 129
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 71/193 (36%), Gaps = 52/193 (26%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV----- 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 81 EDIISSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDML 138
Query: 57 PDCPGPERILTIFAELENGLKVIEEVLPALDE---------IRQKYGKGRGGEDGGDGYN 107
P+ ER +TI + ++ ++++ + E R K GG Y
Sbjct: 139 PN--STERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYT 196
Query: 108 GGGVGGLGKDDYD--IRLIVHQSQ--------------------------------AGCI 133
G + D +L + Q+ GCI
Sbjct: 197 IQGQYAIPHPDLTKLHQLAMQQTPFPPLGQTNPAFPAGLDASPPASTHELTIPNDLIGCI 256
Query: 134 IGKGGTKIKELRD 146
IG+ GTKI E+R
Sbjct: 257 IGRQGTKINEIRQ 269
>gi|255561873|ref|XP_002521945.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223538749|gb|EEF40349.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 548
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 10/137 (7%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIF 69
K++ G P + R+L+P++ GS+IG+ G I ++ + +A + + D P ER + +
Sbjct: 143 KKWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMVS 202
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
A+ E + PA+D + + + + G DG + G G RL+V SQ
Sbjct: 203 AKEEPD----SALPPAMDGLLRVHKRIVDGLDGDSSHASSGTG----TKVSTRLLVPASQ 254
Query: 130 AGCIIGKGGTKIKELRD 146
AG +IGK G +K +++
Sbjct: 255 AGSLIGKQGGTVKSIQE 271
>gi|196009850|ref|XP_002114790.1| hypothetical protein TRIADDRAFT_28388 [Trichoplax adhaerens]
gi|190582852|gb|EDV22924.1| hypothetical protein TRIADDRAFT_28388 [Trichoplax adhaerens]
Length = 360
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 68/132 (51%), Gaps = 19/132 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PGP-ERILTIFAELENG 75
V L+LLIP+ AGS+IGKGG I L+ND K + + PG ER++ I +
Sbjct: 22 VVLKLLIPNYAAGSIIGKGGDVINDLQNDSKTRIRLSHNNDTFPGTKERVIVITGSIAGV 81
Query: 76 LKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKD-DYDIRLIVHQSQAGCII 134
+V +L + E G D Y G L K+ + +++IV + AG II
Sbjct: 82 RQVNRFILEKVSE--------EGKADKAIQY-----GVLDKNRNRQLKMIVPNAAAGVII 128
Query: 135 GKGGTKIKELRD 146
GKGG+ IKE++D
Sbjct: 129 GKGGSNIKEIQD 140
Score = 41.6 bits (96), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP----ERILTIFAELENGLK 77
+L++++P+ AG +IGKGGSNI +++ A V V ERILT+ E L
Sbjct: 114 QLKMIVPNAAAGVIIGKGGSNIKEIQDKSGAHVQVSQKKAQYAIDERILTVTGEFNERLT 173
Query: 78 VIEEVL 83
E ++
Sbjct: 174 AWELII 179
>gi|74141926|dbj|BAE41029.1| unnamed protein product [Mus musculus]
Length = 278
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+ K
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFA 73
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
++ L+E D + +RL+V SQ G +IGKGG K
Sbjct: 74 MIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGSLIGKGGCK 119
Query: 141 IKELRDTFDA 150
IKE+R++ A
Sbjct: 120 IKEIRESTGA 129
>gi|194384644|dbj|BAG59482.1| unnamed protein product [Homo sapiens]
Length = 301
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+E D + +RL+V SQ G
Sbjct: 66 NAIFKAFAMIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGS 111
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 112 LIGKGGCKIKEIRESTGA 129
>gi|444021|emb|CAA82631.1| sub2.3 [Homo sapiens]
Length = 299
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G ++ R+R + A + + + PERI+T+ K
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFA 73
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
++ L+E D + +RL+V +Q G +IGKGG K
Sbjct: 74 MIIDKLEE------------DINSSMTNSTAAS--RPPVTLRLVVPATQCGSLIGKGGCK 119
Query: 141 IKELRDTFDA 150
IKE+R++ A
Sbjct: 120 IKEIRESTGA 129
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGVPQSV 155
Query: 76 LKVIEEVLPALDEIRQKYGKGR 97
+ ++++ + E + +GR
Sbjct: 156 TECVKQICLVMLETLSQSPQGR 177
>gi|417409319|gb|JAA51170.1| Putative polyc-binding alphacp-1, partial [Desmodus rotundus]
Length = 283
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G ++ R+R + A + + + PERI+T+ K
Sbjct: 23 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFA 82
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
++ L+E D + +RL+V +Q G +IGKGG K
Sbjct: 83 MIIDKLEE------------DINSSMTNSTAAS--RPPVTLRLVVPATQCGSLIGKGGCK 128
Query: 141 IKELRDTFDA 150
IKE+R++ A
Sbjct: 129 IKEIRESTGA 138
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 107 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGVPQSV 164
Query: 76 LKVIEEVLPALDEIRQKYGKGR 97
+ ++++ + E + +GR
Sbjct: 165 TECVKQICLVMLETLSQSPQGR 186
>gi|354475601|ref|XP_003500016.1| PREDICTED: poly(rC)-binding protein 2-like [Cricetulus griseus]
Length = 325
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 14/127 (11%)
Query: 24 RLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVL 83
RLL+ + GS+I K G ++ ++R + A ++ D PERI+T+ K ++
Sbjct: 17 RLLMHGKEVGSIIAKKGESVKKMREESGARTSISDGNCPERIITLAGPTNAIFKAFAMII 76
Query: 84 PALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKE 143
L+E G + + +RL+V SQ G +IGKGG KIKE
Sbjct: 77 DKLEE--------------GISSSMTNSTAASRPPVALRLVVPASQCGSLIGKGGCKIKE 122
Query: 144 LRDTFDA 150
+R++ A
Sbjct: 123 IRESTGA 129
>gi|413955311|gb|AFW87960.1| hypothetical protein ZEAMMB73_110576 [Zea mays]
gi|413955312|gb|AFW87961.1| hypothetical protein ZEAMMB73_110576 [Zea mays]
Length = 543
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 69/144 (47%), Gaps = 24/144 (16%)
Query: 14 FRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASV----TVPDCPGPERILTIF 69
+ GP+D R L SR GS+IG+GG +LR + +A + +VP C ER++TIF
Sbjct: 31 YAPGPDDTVYRYLCASRKIGSIIGRGGEIAKQLRTETQAKIRIGESVPGC--EERVITIF 88
Query: 70 AELE--NGLKVIEE-VLPALDEI-----RQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDI 121
+ N + E+ V PA D + R + G ED + +
Sbjct: 89 SSSRRTNTIDDAEDKVCPAQDALFRVHERLATDESFGNEDSEE----------ISPQVTV 138
Query: 122 RLIVHQSQAGCIIGKGGTKIKELR 145
RL+V Q GCI+GKGG I+ +R
Sbjct: 139 RLLVPSDQIGCILGKGGHIIQGIR 162
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 114 LGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
L + Y RL+V S+ GC+IGKGG+ I E+R T A
Sbjct: 360 LAEQSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRA 396
>gi|380792097|gb|AFE67924.1| poly(rC)-binding protein 2 isoform f, partial [Macaca mulatta]
Length = 197
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+ K
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFA 73
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
++ L+E D + +RL+V SQ G +IGKGG K
Sbjct: 74 MIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGSLIGKGGCK 119
Query: 141 IKELRDTFDA 150
IKE+R++ A
Sbjct: 120 IKEIRESTGA 129
Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGIPQSI 155
Query: 76 LKVIEEV-LPALDEIRQKYGKG 96
++ ++++ + L+ + Q KG
Sbjct: 156 IECVKQICVVMLETLSQSPPKG 177
>gi|296213265|ref|XP_002753197.1| PREDICTED: poly(rC)-binding protein 2-like isoform 1 [Callithrix
jacchus]
Length = 342
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 17/139 (12%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPT 65
Query: 73 ENGLKVIEEVLPALDE-IRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAG 131
K ++ L+E IR + + L+V SQ G
Sbjct: 66 NAIFKAFAMIIDKLEEDIRSSMTNSTAAS---------------RPPVTLSLVVPASQCG 110
Query: 132 CIIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 111 SLIGKGGCKIKEIRESTGA 129
>gi|355709446|gb|AES03594.1| Poly rC-binding protein 1 [Mustela putorius furo]
Length = 209
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G ++ R+R + A + + + PERI+T+ K
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFA 73
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
++ L+E D + +RL+V +Q G +IGKGG K
Sbjct: 74 MIIDKLEE------------DINSSMTNSTAAS--RPPVTLRLVVPATQCGSLIGKGGCK 119
Query: 141 IKELRDTFDA 150
IKE+R++ A
Sbjct: 120 IKEIRESTGA 129
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGVPQSV 155
Query: 76 LKVIEEVLPALDEIRQKYGKGR 97
+ ++++ + E + +GR
Sbjct: 156 TECVKQICLVMLETLSQSPQGR 177
>gi|413955310|gb|AFW87959.1| hypothetical protein ZEAMMB73_110576 [Zea mays]
Length = 528
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 69/144 (47%), Gaps = 24/144 (16%)
Query: 14 FRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASV----TVPDCPGPERILTIF 69
+ GP+D R L SR GS+IG+GG +LR + +A + +VP C ER++TIF
Sbjct: 31 YAPGPDDTVYRYLCASRKIGSIIGRGGEIAKQLRTETQAKIRIGESVPGC--EERVITIF 88
Query: 70 AELE--NGLKVIEE-VLPALDEI-----RQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDI 121
+ N + E+ V PA D + R + G ED + +
Sbjct: 89 SSSRRTNTIDDAEDKVCPAQDALFRVHERLATDESFGNEDSEE----------ISPQVTV 138
Query: 122 RLIVHQSQAGCIIGKGGTKIKELR 145
RL+V Q GCI+GKGG I+ +R
Sbjct: 139 RLLVPSDQIGCILGKGGHIIQGIR 162
Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 114 LGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
L + Y RL+V S+ GC+IGKGG+ I E+R T A
Sbjct: 360 LAEQSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRA 396
>gi|432848574|ref|XP_004066413.1| PREDICTED: poly(rC)-binding protein 3-like [Oryzias latipes]
Length = 349
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G + ++R D A + + + PERI+T K
Sbjct: 16 LTIRLLMHGKEVGSIIGKKGETVKKMREDSGARINISEGNCPERIVTXXXXXXXIFK--- 72
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
A I K+ ED + + K +RL+V SQ G +IGKGG+K
Sbjct: 73 ----AFAMIAYKF-----EEDIINSMSNS--PATSKPPVTLRLVVPASQCGSLIGKGGSK 121
Query: 141 IKELRDTFDA 150
IKE+R++ A
Sbjct: 122 IKEMRESTGA 131
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV----- 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 83 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDML 140
Query: 57 PDCPGPERILTIFAELENGLKVIEEV 82
P+ ER +TI E ++ ++++
Sbjct: 141 PN--STERAVTISGAPEAIIQCVKQI 164
>gi|380792087|gb|AFE67919.1| poly(rC)-binding protein 2 isoform g, partial [Macaca mulatta]
Length = 193
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+ K
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFA 73
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
++ L+E D + +RL+V SQ G +IGKGG K
Sbjct: 74 MIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGSLIGKGGCK 119
Query: 141 IKELRDTFDA 150
IKE+R++ A
Sbjct: 120 IKEIRESTGA 129
>gi|156368623|ref|XP_001627792.1| predicted protein [Nematostella vectensis]
gi|156214712|gb|EDO35692.1| predicted protein [Nematostella vectensis]
Length = 390
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 77/148 (52%), Gaps = 30/148 (20%)
Query: 11 FKRFRGGPNDVE-LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-PD---CPGP-ER 64
+KR GP L++L+P+ AGS+IGKGG NIA+++ A + + P+ PG ER
Sbjct: 35 YKRSNFGPAKSPILKILVPNYAAGSIIGKGGQNIAQVQQTTGARIKLSPNNQYYPGTQER 94
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYD---- 120
I I E+EN +++++ V+ D+IRQ+ G+ +D
Sbjct: 95 IGLIMGEVENIVQMLDFVI---DKIRQE---------------PQGIKASMSISFDRERA 136
Query: 121 --IRLIVHQSQAGCIIGKGGTKIKELRD 146
+++IV S AG IIGK G+ IK + +
Sbjct: 137 KQMKIIVPNSTAGMIIGKAGSAIKSISE 164
>gi|357501947|ref|XP_003621262.1| KH domain-containing protein [Medicago truncatula]
gi|355496277|gb|AES77480.1| KH domain-containing protein [Medicago truncatula]
Length = 571
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 24/147 (16%)
Query: 14 FRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASV----TVPDCPGPERILTIF 69
F +D R L P R GS+IG+GG + +LR D KA + TVP C ER++T++
Sbjct: 42 FHITQDDTVYRYLCPVRKIGSIIGRGGEIVKQLRLDTKAKIRIGETVPGC--DERVVTVY 99
Query: 70 A------ELENGLKVIEEVLPALDEIRQKYGKG--RGGEDGG---DGYNGGGVGGLGKDD 118
+ + E+ + + + AL I QK RG ED + +GG D
Sbjct: 100 SVSDESNDFEDSGEFMCPAMDALVRIHQKVIAEDLRGVEDEDVDMEKVDGG-------DL 152
Query: 119 YDIRLIVHQSQAGCIIGKGGTKIKELR 145
+L+V Q GC+IGKGG ++ +R
Sbjct: 153 VTAKLLVASDQIGCVIGKGGQIVQNIR 179
>gi|313223506|emb|CBY41924.1| unnamed protein product [Oikopleura dioica]
Length = 317
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 49/104 (47%), Gaps = 17/104 (16%)
Query: 43 IARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDG 102
I LR+DF + VPD GPER+L E N +IE+V L + R D
Sbjct: 2 IKSLRSDFACQLNVPDAQGPERVLRFVCEDSNVSPLIEKVGNLLRN--DMVERNRAQADS 59
Query: 103 GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRD 146
D D+R++VHQS+AG +IG G IK LRD
Sbjct: 60 ---------------DIDMRMLVHQSKAGAVIGFKGETIKGLRD 88
>gi|224141011|ref|XP_002323868.1| predicted protein [Populus trichocarpa]
gi|222866870|gb|EEF04001.1| predicted protein [Populus trichocarpa]
Length = 531
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 67/145 (46%), Gaps = 23/145 (15%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASV----TVPDCPGPERILT 67
+RF D R L P+R GS+IG+GG I +LR D K+ + TVP C ER++T
Sbjct: 33 ERFVIDSQDTVYRYLCPARKIGSIIGRGGEIIKQLRIDTKSKIRVGETVPGC--EERVVT 90
Query: 68 IFA------ELENGLKVIEEVLPALDEIRQKY-GKGRGGEDGGDGYNGGGVGGLGKDDYD 120
I++ E E+ I AL + K + ED + G
Sbjct: 91 IYSPSDETNEYEDSGNYISPAQDALFRVHDKVIAEDLQVEDDSE----------GSPQVT 140
Query: 121 IRLIVHQSQAGCIIGKGGTKIKELR 145
+L+V Q GCIIGKGG ++ +R
Sbjct: 141 AKLLVPSDQIGCIIGKGGQIVQNIR 165
>gi|324516472|gb|ADY46541.1| Poly(rC)-binding protein 3 [Ascaris suum]
Length = 360
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 17/126 (13%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G +I +R+ A + + D PERI+TI ++ K
Sbjct: 23 LTIRLLMQGKEVGSIIGKRGDHIKSIRDGSGAKINISDGSCPERIVTITGNVDTINKAFS 82
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
+ E Q + K +RLIV +Q G +IGKGG+K
Sbjct: 83 MICNKFQEDMQALP-----------------NSVPKPPITMRLIVPATQCGSLIGKGGSK 125
Query: 141 IKELRD 146
IKE+R+
Sbjct: 126 IKEIRE 131
Score = 35.4 bits (80), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
+ +RL++P+ GS+IGKGGS I +R AS+ V
Sbjct: 104 ITMRLIVPATQCGSLIGKGGSKIKEIREATGASIQV 139
>gi|324519086|gb|ADY47282.1| Poly(rC)-binding protein 3 [Ascaris suum]
Length = 342
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 17/126 (13%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G +I +R+ A + + D PERI+TI ++ K
Sbjct: 23 LTIRLLMQGKEVGSIIGKRGDHIKSIRDGSGAKINISDGSCPERIVTITGNVDTINKAFS 82
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
+ E Q + K +RLIV +Q G +IGKGG+K
Sbjct: 83 MICNKFQEDMQALP-----------------NSVPKPPITMRLIVPATQCGSLIGKGGSK 125
Query: 141 IKELRD 146
IKE+R+
Sbjct: 126 IKEIRE 131
Score = 35.4 bits (80), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
+ +RL++P+ GS+IGKGGS I +R AS+ V
Sbjct: 104 ITMRLIVPATQCGSLIGKGGSKIKEIREATGASIQV 139
>gi|390458234|ref|XP_003732080.1| PREDICTED: poly(rC)-binding protein 1-like [Callithrix jacchus]
Length = 349
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G ++ R+R + A + + + PERI+T+ K
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFA 73
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
++ L+E D + +RL+V +Q G +IGKGG K
Sbjct: 74 MIIDKLEE------------DINSSMTNSTAAS--RPPVTLRLVVPATQCGSLIGKGGCK 119
Query: 141 IKELRDTFDA 150
IKE+R + A
Sbjct: 120 IKEIRKSTGA 129
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ E+ +TI ++
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRKSTGAQVQVAGDMLPN--STEQAITIAGMPQSV 155
Query: 76 LKVIEEVLPALDEIRQKYGKGR 97
+ ++++ + E + +GR
Sbjct: 156 TECVKQICLVMLETISQSPQGR 177
>gi|260064185|gb|ACX30053.1| MIP13670p [Drosophila melanogaster]
Length = 346
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 18/148 (12%)
Query: 7 QLSNFKR---FRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC---- 59
QL N+K + G +++L+P+ +G++IGKGG IA L+ D A V +
Sbjct: 129 QLGNYKTNSCWCYGETTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFY 188
Query: 60 PG-PERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD 118
PG ER+ I E + V+E + +D+IR+K D + + D
Sbjct: 189 PGTTERVCLITGSTEAIMVVMEFI---MDKIREK-------PDLTNKIVDTDSKQTQERD 238
Query: 119 YDIRLIVHQSQAGCIIGKGGTKIKELRD 146
++++V S AG IIGKGG IK++++
Sbjct: 239 KQVKILVPNSTAGMIIGKGGAFIKQIKE 266
Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG----PERILTIFAELENG 75
D ++++L+P+ AG +IGKGG+ I +++ + + V + P ER +TI + EN
Sbjct: 238 DKQVKILVPNSTAGMIIGKGGAFIKQIKEESGSYVQISQKPTDVSLQERCITIIGDKENN 297
Query: 76 LKVIEEVLPALDEIRQ 91
+ +L + E Q
Sbjct: 298 KNACKMILSKIVEDPQ 313
>gi|291409713|ref|XP_002721143.1| PREDICTED: poly(rC) binding protein 2-like isoform 2 [Oryctolagus
cuniculus]
Length = 340
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 15/136 (11%)
Query: 16 GGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELEN 74
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 8 GGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNA 67
Query: 75 GLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCII 134
K ++ L+E D + +RL+V SQ G +I
Sbjct: 68 IFKAFAMIIDKLEE------------DISSSMTNSTAAS--RPLVTLRLVVPASQCGSLI 113
Query: 135 GKGGTKIKELRDTFDA 150
GKGG KIKE+R++ A
Sbjct: 114 GKGGCKIKEIRESTGA 129
Score = 35.0 bits (79), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGIPQSI 155
Query: 76 LKVIEEVLPALDE 88
++ ++ + + E
Sbjct: 156 IECVKHICVVMLE 168
>gi|296086352|emb|CBI31941.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 43/136 (31%), Positives = 66/136 (48%), Gaps = 15/136 (11%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASV----TVPDCPGPERILTIFAEL 72
G D R L P R GS+IG+GG +LR++ K+++ T+P C ER++TI++
Sbjct: 105 GVEDTVYRYLCPVRKIGSIIGRGGDIAKQLRSETKSNIRIGETMPGC--EERVVTIYSSS 162
Query: 73 ENGL---KVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
E E V PA D + + + + GE D +R++V Q
Sbjct: 163 EETNPFGDTGELVSPAQDALFRVHDRIVAGELPADEEPEEA------QQVTVRMLVPSDQ 216
Query: 130 AGCIIGKGGTKIKELR 145
GC+IGKGG I+ +R
Sbjct: 217 IGCVIGKGGQVIQNIR 232
>gi|328712758|ref|XP_003244898.1| PREDICTED: poly(rC)-binding protein 3-like [Acyrthosiphon pisum]
Length = 436
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 15/131 (11%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
D +R+L+ SR G+VIG G + +R+ A V + + PERI+ I +
Sbjct: 27 DFTIRILLNSREVGNVIGIRGETVKNIRSQSGARVLISNGSTPERIVIISGNTIAICRAT 86
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
E + G E+ + NG +G K ++LIV SQ G IIGK G+
Sbjct: 87 ELI-------------GLKVEEFSERLNGNWIGP--KTPLTLKLIVPASQCGFIIGKNGS 131
Query: 140 KIKELRDTFDA 150
KI+E+RD+ A
Sbjct: 132 KIREIRDSSRA 142
>gi|221114013|ref|XP_002155770.1| PREDICTED: poly(rC)-binding protein 3-like [Hydra magnipapillata]
Length = 313
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 70/133 (52%), Gaps = 24/133 (18%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTI---FAELENGLK 77
+EL +I S+ AG +IGK G NI ++R++ A++ V G ERIL I +E+++ ++
Sbjct: 6 LELHFIILSQDAGGIIGKEGRNIRQMRDESGANINVSGSTGVERILNIKGTSSEVKSAVR 65
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKG 137
++ E L EI G N V + +RL+V SQ G +IGKG
Sbjct: 66 MVAE---KLQEIL-------------SGSNNEYVPPV-----TLRLLVPNSQCGPLIGKG 104
Query: 138 GTKIKELRDTFDA 150
G +IKE+R+ A
Sbjct: 105 GQRIKEIREASGA 117
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 62/139 (44%), Gaps = 16/139 (11%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CPG-PERILTIFAELEN-GL 76
V LRLL+P+ G +IGKGG I +R A++T+P PG ER +T+ E GL
Sbjct: 86 VTLRLLVPNSQCGPLIGKGGQRIKEIREASGATITIPSETLPGSSERSVTLAGSPEALGL 145
Query: 77 KV-----IEEVLPALDEIRQ----KYGKGRGGEDGGDGYNGGGVGGLG-KDDYDIRLIVH 126
+ I E PA Q Y + G GL + + +RL
Sbjct: 146 CIAKIWDIFEEFPARQNNVQYFPNMYPRSMGPHQLSVMSGQLSFTGLSRRSEQKVRL--P 203
Query: 127 QSQAGCIIGKGGTKIKELR 145
+ G +IGKGG I E+R
Sbjct: 204 SNVIGSLIGKGGCHINEIR 222
>gi|320542558|ref|NP_001189200.1| pasilla, isoform L [Drosophila melanogaster]
gi|318068744|gb|ADV37291.1| pasilla, isoform L [Drosophila melanogaster]
Length = 758
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 18/148 (12%)
Query: 7 QLSNFKR---FRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC---- 59
QL N+K + G +++L+P+ +G++IGKGG IA L+ D A V +
Sbjct: 235 QLGNYKTNSCWCYGETTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFY 294
Query: 60 PG-PERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD 118
PG ER+ I E + V+E + +D+IR+K D + + D
Sbjct: 295 PGTTERVCLITGSTEAIMVVMEFI---MDKIREK-------PDLTNKIVDTDSKQTQERD 344
Query: 119 YDIRLIVHQSQAGCIIGKGGTKIKELRD 146
++++V S AG IIGKGG IK++++
Sbjct: 345 KQVKILVPNSTAGMIIGKGGAFIKQIKE 372
Score = 39.7 bits (91), Expect = 0.45, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG----PERILTIFAELENG 75
D ++++L+P+ AG +IGKGG+ I +++ + + V + P ER +TI + EN
Sbjct: 344 DKQVKILVPNSTAGMIIGKGGAFIKQIKEESGSYVQISQKPTDVSLQERCITIIGDKENN 403
Query: 76 LKVIEEVLPALDEIRQ 91
+ +L + E Q
Sbjct: 404 KNACKMILSKIVEDPQ 419
>gi|384253488|gb|EIE26963.1| hypothetical protein COCSUDRAFT_59455 [Coccomyxa subellipsoidea
C-169]
Length = 648
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 17/127 (13%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKV 78
VE RLL P+ G+VIGKGGS I ++R+ A + V P+ G ER++++ + E G ++
Sbjct: 31 VEYRLLCPATRIGTVIGKGGSVIQQMRDSTGARIKVEPEVAGCSERLISLSSSDEPGAEL 90
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
AL ++ + + ++ +R++V Q+Q GC++GKGG
Sbjct: 91 C-RAQEALFAVQSRLSEADAAQEDTCCV--------------VRMLVEQAQVGCVLGKGG 135
Query: 139 TKIKELR 145
I +LR
Sbjct: 136 EVISDLR 142
>gi|161078122|ref|NP_001036695.1| pasilla, isoform K [Drosophila melanogaster]
gi|320542560|ref|NP_001189201.1| pasilla, isoform P [Drosophila melanogaster]
gi|320542562|ref|NP_001189202.1| pasilla, isoform M [Drosophila melanogaster]
gi|113194763|gb|ABI31152.1| pasilla, isoform K [Drosophila melanogaster]
gi|318068745|gb|ADV37292.1| pasilla, isoform P [Drosophila melanogaster]
gi|318068746|gb|ADV37293.1| pasilla, isoform M [Drosophila melanogaster]
Length = 550
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 15/138 (10%)
Query: 14 FRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTI 68
F G +++L+P+ +G++IGKGG IA L+ D A V + PG ER+ I
Sbjct: 37 FSSGETTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLI 96
Query: 69 FAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQS 128
E + V+E + +D+IR+K D + + D ++++V S
Sbjct: 97 TGSTEAIMVVMEFI---MDKIREK-------PDLTNKIVDTDSKQTQERDKQVKILVPNS 146
Query: 129 QAGCIIGKGGTKIKELRD 146
AG IIGKGG IK++++
Sbjct: 147 TAGMIIGKGGAFIKQIKE 164
Score = 38.9 bits (89), Expect = 0.73, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG----PERILTIFAELENG 75
D ++++L+P+ AG +IGKGG+ I +++ + + V + P ER +TI + EN
Sbjct: 136 DKQVKILVPNSTAGMIIGKGGAFIKQIKEESGSYVQISQKPTDVSLQERCITIIGDKENN 195
Query: 76 LKVIEEVLPALDEIRQ 91
+ +L + E Q
Sbjct: 196 KNACKMILSKIVEDPQ 211
>gi|291409711|ref|XP_002721142.1| PREDICTED: poly(rC) binding protein 2-like isoform 1 [Oryctolagus
cuniculus]
Length = 362
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+ K
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFA 73
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
++ L+E D + +RL+V SQ G +IGKGG K
Sbjct: 74 MIIDKLEE------------DISSSMTNSTAAS--RPLVTLRLVVPASQCGSLIGKGGCK 119
Query: 141 IKELRDTFDA 150
IKE+R++ A
Sbjct: 120 IKEIRESTGA 129
>gi|357602329|gb|EHJ63352.1| hypothetical protein KGM_14186 [Danaus plexippus]
Length = 546
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 42/130 (32%), Positives = 72/130 (55%), Gaps = 16/130 (12%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTIFAELENGLK 77
++L+PS VAG++IGKGG IA+L+ D A V + PG ER I +E +
Sbjct: 68 FKVLVPSMVAGAIIGKGGETIAQLQKDTGARVKMSKSHDFYPGTTERACLITGSVEGIMV 127
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKD-DYDIRLIVHQSQAGCIIGK 136
V++ + +++I++K + +G D + +D D ++++V S AG IIGK
Sbjct: 128 VLDFI---MEKIKEKPELVKPFPEGVD-------AKMPQDRDKQVKILVPNSTAGMIIGK 177
Query: 137 GGTKIKELRD 146
GG IK++++
Sbjct: 178 GGNYIKQIKE 187
Score = 35.8 bits (81), Expect = 6.1, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVP----DCPGPERILTIFAELENG 75
D ++++L+P+ AG +IGKGG+ I +++ + V + + ER +T+ E EN
Sbjct: 159 DKQVKILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCITVVGEKENN 218
Query: 76 LKVIEEVL 83
K +L
Sbjct: 219 KKACLMIL 226
>gi|380012793|ref|XP_003690459.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Apis
florea]
Length = 443
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 30/36 (83%)
Query: 115 GKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
G D+ D+R++VHQSQAGCIIGKGG KIKELR+ A
Sbjct: 116 GSDEIDVRMLVHQSQAGCIIGKGGLKIKELREKTGA 151
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/40 (67%), Positives = 32/40 (80%), Gaps = 2/40 (5%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRN 48
S KR+R G D ELRLLIPS+VAGS+IGKGG NI +LR+
Sbjct: 72 SPHKRYRQG--DDELRLLIPSKVAGSIIGKGGQNITKLRS 109
Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-G 61
I +L + R G +++++R+L+ AG +IGKGG I LR A + + CP
Sbjct: 104 ITKLRSQNGSRHGSDEIDVRMLVHQSQAGCIIGKGGLKIKELREKTGARIKIYSHCCPHS 163
Query: 62 PERILTIFAELENGLKVIEEVLPAL 86
+R+++I + ++ I E++ +
Sbjct: 164 TDRLISICGKPTTCIECIRELIATI 188
Score = 35.4 bits (80), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 24 RLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV--PDCPGPERILTI 68
++ IP +AG++IGKGG+ I ++R+D A +T+ P +RI+TI
Sbjct: 372 QVTIPKDLAGAIIGKGGARIRKVRSDSGAGITIDEPLSGSNDRIITI 418
>gi|147853553|emb|CAN81693.1| hypothetical protein VITISV_009249 [Vitis vinifera]
Length = 543
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 66/136 (48%), Gaps = 15/136 (11%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASV----TVPDCPGPERILTIFAEL 72
G D R L P R GS+IG+GG +LR++ K+++ T+P C ER++TI++
Sbjct: 39 GVEDTVYRYLCPVRKIGSIIGRGGDIAKQLRSETKSNIRIGETMPGC--EERVVTIYSSS 96
Query: 73 ENGLK---VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
E E V PA D + + + + GE D +R++V Q
Sbjct: 97 EETNPFGDTGELVSPAQDALFRVHDRIVAGELPADEEPEEA------QQVTVRMLVPSDQ 150
Query: 130 AGCIIGKGGTKIKELR 145
GC+IGKGG I+ +R
Sbjct: 151 IGCVIGKGGQVIQNIR 166
>gi|328784994|ref|XP_003250531.1| PREDICTED: RNA-binding protein Nova-2-like [Apis mellifera]
Length = 514
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 15/137 (10%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTIFA 70
GG L++L+P AG++IGKGG IA+L+ D A V + PG ER+ I
Sbjct: 40 GGDGTYHLKVLVPGVAAGAIIGKGGDTIAQLQKDTGARVKMSKSHDFYPGTTERVCLITG 99
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKG-RGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
LE + V++ + +D+IR+K + D G + D ++++V S
Sbjct: 100 SLEAIMAVMDFI---MDKIREKPDLTLKTTVDFESGKT------TAERDKQVKILVPNST 150
Query: 130 AGCIIGKGGTKIKELRD 146
AG IIGK G IK++++
Sbjct: 151 AGMIIGKAGNYIKQIKE 167
Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVP----DCPGPERILTIFAELENG 75
D ++++L+P+ AG +IGK G+ I +++ + + V + D ER +T+ E EN
Sbjct: 139 DKQVKILVPNSTAGMIIGKAGNYIKQIKEECGSYVQISQKAKDVSLQERCITVIGEKENN 198
Query: 76 LKVIEEVL 83
+ +L
Sbjct: 199 RNALMMIL 206
>gi|380026051|ref|XP_003696775.1| PREDICTED: RNA-binding protein Nova-2-like isoform 2 [Apis florea]
Length = 522
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 15/137 (10%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTIFA 70
GG L++L+P AG++IGKGG IA+L+ D A V + PG ER+ I
Sbjct: 40 GGDGTYHLKVLVPGVAAGAIIGKGGDTIAQLQKDTGARVKMSKSHDFYPGTTERVCLITG 99
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKG-RGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
LE + V++ + +D+IR+K + D G + D ++++V S
Sbjct: 100 SLEAIMAVMDFI---MDKIREKPDLTLKTTVDFESGKT------TAERDKQVKILVPNST 150
Query: 130 AGCIIGKGGTKIKELRD 146
AG IIGK G IK++++
Sbjct: 151 AGMIIGKAGNYIKQIKE 167
Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVP----DCPGPERILTIFAELENG 75
D ++++L+P+ AG +IGK G+ I +++ + + V + D ER +T+ E EN
Sbjct: 139 DKQVKILVPNSTAGMIIGKAGNYIKQIKEECGSYVQISQKAKDVSLQERCITVIGEKENN 198
Query: 76 LKVIEEVL 83
+ +L
Sbjct: 199 RNALMMIL 206
>gi|380026049|ref|XP_003696774.1| PREDICTED: RNA-binding protein Nova-2-like isoform 1 [Apis florea]
Length = 514
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 15/137 (10%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTIFA 70
GG L++L+P AG++IGKGG IA+L+ D A V + PG ER+ I
Sbjct: 40 GGDGTYHLKVLVPGVAAGAIIGKGGDTIAQLQKDTGARVKMSKSHDFYPGTTERVCLITG 99
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKG-RGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
LE + V++ + +D+IR+K + D G + D ++++V S
Sbjct: 100 SLEAIMAVMDFI---MDKIREKPDLTLKTTVDFESGKT------TAERDKQVKILVPNST 150
Query: 130 AGCIIGKGGTKIKELRD 146
AG IIGK G IK++++
Sbjct: 151 AGMIIGKAGNYIKQIKE 167
Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVP----DCPGPERILTIFAELENG 75
D ++++L+P+ AG +IGK G+ I +++ + + V + D ER +T+ E EN
Sbjct: 139 DKQVKILVPNSTAGMIIGKAGNYIKQIKEECGSYVQISQKAKDVSLQERCITVIGEKENN 198
Query: 76 LKVIEEVL 83
+ +L
Sbjct: 199 RNALMMIL 206
>gi|340714094|ref|XP_003395567.1| PREDICTED: RNA-binding protein Nova-2-like [Bombus terrestris]
gi|350427987|ref|XP_003494948.1| PREDICTED: RNA-binding protein Nova-2-like [Bombus impatiens]
Length = 514
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 15/137 (10%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTIFA 70
GG L++L+P AG++IGKGG IA+L+ D A V + PG ER+ I
Sbjct: 40 GGDGTYHLKVLVPGVAAGAIIGKGGDTIAQLQKDTGARVKMSKSHDFYPGTTERVCLITG 99
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKG-RGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
LE + V++ + +D+IR+K + D G + D ++++V S
Sbjct: 100 SLEAIMAVMDFI---MDKIREKPDLTLKTTVDFESGKT------TAERDKQVKILVPNST 150
Query: 130 AGCIIGKGGTKIKELRD 146
AG IIGK G IK++++
Sbjct: 151 AGMIIGKAGNYIKQIKE 167
Score = 35.8 bits (81), Expect = 5.6, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVP----DCPGPERILTIFAELENG 75
D ++++L+P+ AG +IGK G+ I +++ + + V + D ER +T+ E EN
Sbjct: 139 DKQVKILVPNSTAGMIIGKAGNYIKQIKEECGSYVQISQKAKDVSLQERCITVIGEKENN 198
Query: 76 LKVIEEVL 83
+ +L
Sbjct: 199 RNALMMIL 206
>gi|255557235|ref|XP_002519648.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223541065|gb|EEF42621.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 462
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 70/148 (47%), Gaps = 18/148 (12%)
Query: 10 NFKRFRGGPND-VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PGP-ERIL 66
N K RG ++ V R+L P V GSVIGK G I +R + +A V V D PGP +R++
Sbjct: 27 NDKDERGNNDELVAYRILCPDEVIGSVIGKNGKVINSIRQETRAKVKVVDPFPGPNDRVI 86
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLG---------KD 117
TI+ ++ V LD+ + +D + + KD
Sbjct: 87 TIYCYVKKKEDV------ELDDEFHDHQPFCAAQDALLRVHSAISNAVSSVLDSDRKMKD 140
Query: 118 DYDIRLIVHQSQAGCIIGKGGTKIKELR 145
+ R++V SQ+ IIGK GT IK+LR
Sbjct: 141 KEECRILVPSSQSANIIGKAGTTIKKLR 168
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 16/125 (12%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEE 81
E R+L+PS + ++IGK G+ I +LR+ +A++ V + + + +N + ++
Sbjct: 143 ECRILVPSSQSANIIGKAGTTIKKLRSKTRATIKVTPKDASDPTHSCAMDFDNFIMSPDD 202
Query: 82 VLP-ALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
+ A++ I GK +D D IRL+V GCIIGK G+
Sbjct: 203 LKSMAVEAILLLQGKINDEDD---------------DTVSIRLLVPCKVIGCIIGKSGSI 247
Query: 141 IKELR 145
I E+R
Sbjct: 248 INEIR 252
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD 58
K + G P L +L+P+ G V+GKGG+NIA +R A + + D
Sbjct: 383 KLYGGLPPPSTLEMLVPANAVGKVLGKGGANIANIRKISGAMIEISD 429
Score = 35.8 bits (81), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCP-GPERILTIFAELEN 74
V +RLL+P +V G +IGK GS I +R KA + + P C + ++ + E+ +
Sbjct: 226 VSIRLLVPCKVIGCIIGKSGSIINEIRRRTKADIRISKGQKPKCADSSDELVEVLGEVGS 285
Query: 75 GLKVIEEVLPAL--DEIRQKYGKGRGGEDGGDGYNGGG 110
+ +++ L D +++K G Y+GG
Sbjct: 286 VRDALVQIVLRLRDDALKEKDGSHNPSVGADPLYSGGS 323
>gi|359473301|ref|XP_002272287.2| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
vinifera]
Length = 517
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 67/141 (47%), Gaps = 15/141 (10%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASV----TVPDCPGPERILTIFAEL 72
G D R L P R GS+IG+GG +LR++ K+++ T+P C ER++TI++
Sbjct: 39 GVEDTVYRYLCPVRKIGSIIGRGGDIAKQLRSETKSNIRIGETMPGC--EERVVTIYSSS 96
Query: 73 ENGLK---VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
E E V PA D + + + + GE D +R++V Q
Sbjct: 97 EETNPFGDTGELVSPAQDALFRVHDRIVAGELPADEEPEEA------QQVTVRMLVPSDQ 150
Query: 130 AGCIIGKGGTKIKELRDTFDA 150
GC+IGKGG I+ +R A
Sbjct: 151 IGCVIGKGGQVIQNIRSETRA 171
>gi|383863655|ref|XP_003707295.1| PREDICTED: RNA-binding protein Nova-2-like isoform 2 [Megachile
rotundata]
Length = 535
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 15/136 (11%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTIFAE 71
G L++L+P AG++IGKGG IA+L+ D A V + PG ER+ I
Sbjct: 62 GDGTYHLKVLVPGVAAGAIIGKGGDTIAQLQKDTGAKVKISKSHDFYPGTTERVCLITGS 121
Query: 72 LENGLKVIEEVLPALDEIRQKYGKG-RGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
LE + V++ + +D+IR+K + D G + D ++++V S A
Sbjct: 122 LEAIMAVMDFI---MDKIREKPDLTLKTTVDSESGKT------TAERDKQVKILVPNSTA 172
Query: 131 GCIIGKGGTKIKELRD 146
G IIGK G IK++++
Sbjct: 173 GMIIGKAGNYIKQIKE 188
Score = 35.8 bits (81), Expect = 5.4, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVP----DCPGPERILTIFAELENG 75
D ++++L+P+ AG +IGK G+ I +++ + + V + D ER +T+ E EN
Sbjct: 160 DKQVKILVPNSTAGMIIGKAGNYIKQIKEESGSYVQISQKAKDVSLQERCITVIGEKENN 219
Query: 76 LKVIEEVL 83
+ +L
Sbjct: 220 RNALMMIL 227
>gi|224076902|ref|XP_002305041.1| predicted protein [Populus trichocarpa]
gi|222848005|gb|EEE85552.1| predicted protein [Populus trichocarpa]
Length = 623
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 72/154 (46%), Gaps = 31/154 (20%)
Query: 11 FKRFRGGPND--VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERI 65
K +G ND V R+L P V GSVIGK G I +RN+ +A V V D P P R+
Sbjct: 24 HKDNKGTDNDELVVYRILCPDEVIGSVIGKSGKVINSIRNESRARVKVVD-PFPGAMYRV 82
Query: 66 LTIF--------AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLG-- 115
+TI+ A++++ + + PA D + + + V LG
Sbjct: 83 ITIYCNVKEKGDADVDDDFHQADPLCPAQDALLKVHAA-----------ISNAVAALGDS 131
Query: 116 ----KDDYDIRLIVHQSQAGCIIGKGGTKIKELR 145
+D + +++V SQ+ IIGK G IK+LR
Sbjct: 132 DKRCRDKKECQILVPTSQSANIIGKAGATIKKLR 165
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 56/131 (42%), Gaps = 23/131 (17%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--PERILTIFA-ELENGLKVI 79
+RLL P G VIGKGGS I +R A + V D E I+T+ A E + LK +
Sbjct: 308 IRLLCPFDKIGRVIGKGGSTIKSIRQVSGARIEVDDTKADRDECIITVIATESPDDLKSM 367
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
A++ I GK + D IR +V GCIIGK G
Sbjct: 368 -----AVEAILLLQGK---------------INDEDNDIVGIRFLVPSKVIGCIIGKSGA 407
Query: 140 KIKELRDTFDA 150
+ E+R +A
Sbjct: 408 IVNEIRKRTNA 418
Score = 38.9 bits (89), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD 58
K + G P L +L+P+ G VIGKGG+NIA +R A + + D
Sbjct: 544 KLYEGLPPPSTLEMLVPANAVGKVIGKGGANIANIRKISGAMIEISD 590
>gi|302142130|emb|CBI19333.3| unnamed protein product [Vitis vinifera]
Length = 672
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 32/157 (20%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASV----TVPDCPGPER 64
S + + P V R+L P+ GSVIGKGG+ I+++R + V TV C ER
Sbjct: 33 SQNQSLKISPGTVVFRVLCPASKTGSVIGKGGTIISQIRQETGVKVRVEETVSGCD--ER 90
Query: 65 ILTIF-----------------AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYN 107
++ I +++E G+ +++ AL + ++ +G +GGD +
Sbjct: 91 VVLITGSDKDTEADNEQSKEDDSQVEKGISSVQK---ALLLVFERMAEGESETNGGDEDS 147
Query: 108 GGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKEL 144
+ +RL+V SQ GC++GKGG+ IK++
Sbjct: 148 NKS------PTFVVRLLVLSSQVGCLLGKGGSVIKQM 178
>gi|148905782|gb|ABR16055.1| unknown [Picea sitchensis]
Length = 650
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 69/145 (47%), Gaps = 25/145 (17%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PG-PERILTIFAE--- 71
G + R+L PS V GSVIGKGG I +R + ++ + V D PG ER++ IF+
Sbjct: 38 GADSTVYRILCPSNVIGSVIGKGGKVIKSMRQETRSKIRVADAVPGVDERVIVIFSSPLS 97
Query: 72 ------LENGLKVIEEVLPALDEIRQKYG----KGRGGEDGGDGYNGGGVGGLGKDDYDI 121
++ E V PA D + + + + G ++ D K D
Sbjct: 98 KDKEKDDDDDDNENEPVCPAQDGLLRVHSVIVQESSGKDNDAD----------KKRPQDA 147
Query: 122 RLIVHQSQAGCIIGKGGTKIKELRD 146
RL+V SQ G +IGKGG I++LR
Sbjct: 148 RLLVANSQIGSLIGKGGNNIQKLRS 172
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 26/146 (17%)
Query: 8 LSNFKRF-----RGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP-- 60
L +F +F + + +R+L P+ G VIGKGG+ I +RND AS+ V D
Sbjct: 298 LPSFSKFGNSTTKKTSEEFSIRVLCPNDKIGGVIGKGGNTIKSMRNDTGASIRVEDAQTE 357
Query: 61 GPERILTIFA-ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDY 119
ER++ + A EL + + V P ++ + GK G D DG
Sbjct: 358 SDERVIVVSATELAD-----DRVSPTIEAVLLLQGKTSGTTD-KDGA------------I 399
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELR 145
R +V GC++GKGG I E+R
Sbjct: 400 STRFLVPSKHIGCLLGKGGNIISEMR 425
Score = 35.4 bits (80), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 18 PNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVP 57
P D RLL+ + GS+IGKGG+NI +LR++ A + +P
Sbjct: 144 PQDA--RLLVANSQIGSLIGKGGNNIQKLRSESGAQIQIP 181
>gi|320580877|gb|EFW95099.1| RNA binding protein [Ogataea parapolymorpha DL-1]
Length = 689
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 47/159 (29%), Positives = 80/159 (50%), Gaps = 27/159 (16%)
Query: 16 GGPNDVEL-------RLLIPSRVAGSVIGKGGSNIARLR--NDFKASVT--VPDCPGPER 64
G NDV+L R+L+ R AG++IGK G NI R+R + KA V+ + C +R
Sbjct: 374 GMTNDVDLGKSLITYRMLVSRREAGAIIGKNGDNITRIREQTNVKAGVSKVIEGC--IDR 431
Query: 65 ILTIFAELENGLKVIEEVLPALDE--IRQKYGKGRGGEDGGD--GYNGGGVGGL-----G 115
ILT+ ++N + + + A+ + ++ G D YN + L
Sbjct: 432 ILTVTGIVDNVPRALVQFAKAVTDSNVQTVASASANGTDPTSLITYNFFPLKPLCPTPAA 491
Query: 116 KDDY-----DIRLIVHQSQAGCIIGKGGTKIKELRDTFD 149
D + +RL++ SQ G +IGKGG++IK +++T++
Sbjct: 492 SDPFYAETLSLRLLIPHSQMGTLIGKGGSRIKSIQETYN 530
>gi|169647179|gb|ACA61608.1| hypothetical protein AP1_E07.1 [Arabidopsis lyrata subsp. petraea]
Length = 532
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 31/173 (17%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD---CPG 61
+ + S+ KR V RLL P+ G++IGKGGS I L++ + + V D P
Sbjct: 226 LMEFSSSKRPATAAESVHFRLLCPASRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPVPS 285
Query: 62 PERILTIFA---ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGD-------------- 104
ER++ I A + ++ V + P+ +E +Q+ G G GGD
Sbjct: 286 EERVVLIIAPSGKKKDDSNVFDSENPSSEEPKQEKGSECAGTSGGDDEEAPSSAQMALLR 345
Query: 105 -------GYNGGGVGGLGKDDYD----IRLIVHQSQAGCIIGKGGTKIKELRD 146
G + V G G D + R+IV +Q ++ KGG I+ +R+
Sbjct: 346 VLERIVFGDDAASVDGDGLDKGESESLCRMIVRGNQVDFLMSKGGKMIQRIRE 398
>gi|30683629|ref|NP_172869.2| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|30102666|gb|AAP21251.1| At1g14170 [Arabidopsis thaliana]
gi|110743444|dbj|BAE99608.1| hypothetical protein [Arabidopsis thaliana]
gi|332190993|gb|AEE29114.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 454
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 6/136 (4%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PG-PERILTIFA---ELEN 74
D R L P + GS+IGKGG ++R++ K+++ + + PG ER++T+++ EL +
Sbjct: 18 DTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELNH 77
Query: 75 GLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCII 134
E V PALD + + + D DG + G K +R++V Q GC+I
Sbjct: 78 FGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLG-EKQTVTVRMLVPSDQIGCVI 136
Query: 135 GKGGTKIKELRDTFDA 150
GKGG I+ LR+ +A
Sbjct: 137 GKGGQVIQNLRNDTNA 152
Score = 40.8 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 24/41 (58%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
G V +R+L+PS G VIGKGG I LRND A + V
Sbjct: 116 GEKQTVTVRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRV 156
Score = 39.3 bits (90), Expect = 0.53, Method: Composition-based stats.
Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 4/36 (11%)
Query: 114 LGKDDYDI----RLIVHQSQAGCIIGKGGTKIKELR 145
+GKD D+ RL+V SQ GC+IGKGG I E+R
Sbjct: 320 VGKDANDLAISTRLLVSSSQIGCLIGKGGAVISEMR 355
>gi|110289326|gb|AAP54423.2| KH domain containing protein, expressed [Oryza sativa Japonica
Group]
Length = 677
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 47/144 (32%), Positives = 76/144 (52%), Gaps = 19/144 (13%)
Query: 18 PNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PGP-ERILTIF---AEL 72
P + R+L P + GSV+G+GG + LR+ KA + V D PG ER++ IF ++
Sbjct: 43 PIETIYRILCPVKKIGSVLGRGGDIVKALRDTTKAKIRVADSIPGADERVIIIFNYSSQT 102
Query: 73 ENGLKVI-----EEVLP---ALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGK--DDYDIR 122
E + I E++ P A D + + + K ED + G V + DD R
Sbjct: 103 EEAAQNISTDGFEDMKPHCFAQDALLKIHDKIAADED----LHAGIVHEKSENVDDVIAR 158
Query: 123 LIVHQSQAGCIIGKGGTKIKELRD 146
++V +Q GC++GKGG+ I++LR+
Sbjct: 159 ILVPGNQVGCLLGKGGSIIQQLRN 182
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
+DV R+L+P G ++GKGGS I +LRND A + V
Sbjct: 153 DDVIARILVPGNQVGCLLGKGGSIIQQLRNDTGAGIRV 190
Score = 36.2 bits (82), Expect = 4.9, Method: Composition-based stats.
Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 25/131 (19%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC---PGPERILTIFA-ELENG 75
+ +++L S G VIGK G N+ ++ A V V + ER++ + + E+ +
Sbjct: 294 EFSIKILCASEHIGQVIGKSGGNVRQVEQQTGACVQVKEVGKNASEERLIVVSSQEIPD- 352
Query: 76 LKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDY-DIRLIVHQSQAGCII 134
+ V P ++ + + K V L ++ + RL+V ++ GCII
Sbjct: 353 ----DPVSPTIEALILLHSK---------------VSTLAENHHLTTRLVVPSNKVGCII 393
Query: 135 GKGGTKIKELR 145
G+GG I E+R
Sbjct: 394 GEGGKVITEMR 404
>gi|326488325|dbj|BAJ93831.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 520
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 10/136 (7%)
Query: 13 RFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--PERILTIFA 70
++ G P + R+L+ ++ G++IG+ G I R+ ++ KA + + D P PER + I A
Sbjct: 112 KWPGWPGESVFRVLVSTQKVGALIGRKGEFIKRMCDESKARIKILDGPPGVPERAVMISA 171
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+ E V PA+D + + + + G D G G RL+V SQA
Sbjct: 172 KDEPD----ALVPPAIDVLLRVHNRITDGLDSETDQAQKGASPAGP----TRLLVPASQA 223
Query: 131 GCIIGKGGTKIKELRD 146
G +IGK GT IK ++D
Sbjct: 224 GSLIGKQGTTIKSIQD 239
>gi|148909250|gb|ABR17725.1| unknown [Picea sitchensis]
Length = 435
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 69/144 (47%), Gaps = 25/144 (17%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PG-PERILTIFAE--- 71
G + R+L PS V GSVIGKGG I +R + ++ + V D PG ER++ IF+
Sbjct: 38 GADSTVYRILCPSNVIGSVIGKGGKVIKSMRQETRSKIRVADAVPGVDERVIVIFSSPLS 97
Query: 72 ------LENGLKVIEEVLPALDEIRQKYG----KGRGGEDGGDGYNGGGVGGLGKDDYDI 121
++ E V PA D + + + + G ++ D K D
Sbjct: 98 KDKEKDDDDDDNENEPVCPAQDGLLRVHSVIVQESSGKDNDAD----------KKRPQDA 147
Query: 122 RLIVHQSQAGCIIGKGGTKIKELR 145
RL+V SQ G +IGKGG I++LR
Sbjct: 148 RLLVANSQIGSLIGKGGNNIQKLR 171
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 26/146 (17%)
Query: 8 LSNFKRF-----RGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC--P 60
L +F +F + + +R+L P+ G VIGKGG+ I +RND AS+ V D
Sbjct: 298 LPSFSKFGNSTTKKTSEEFSIRVLCPNDKIGGVIGKGGNTIKSMRNDTGASIRVEDAQTE 357
Query: 61 GPERILTIFA-ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDY 119
ER++ + A EL + + V P ++ + GK G D DG
Sbjct: 358 SDERVIVVSATELAD-----DRVSPTIEAVLLLQGKTSGTTD-KDGA------------I 399
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELR 145
R +V GC++GKGG I E+R
Sbjct: 400 STRFLVPSKHIGCLLGKGGNIISEMR 425
Score = 35.4 bits (80), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVP 57
+ RLL+ + GS+IGKGG+NI +LR++ A + +P
Sbjct: 146 DARLLVANSQIGSLIGKGGNNIQKLRSESGAQIQIP 181
>gi|442618214|ref|NP_001262415.1| pasilla, isoform R [Drosophila melanogaster]
gi|440217247|gb|AGB95797.1| pasilla, isoform R [Drosophila melanogaster]
Length = 780
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 15/135 (11%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTIFAE 71
G +++L+P+ +G++IGKGG IA L+ D A V + PG ER+ I
Sbjct: 270 GETTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGS 329
Query: 72 LENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAG 131
E + V+E + +D+IR+K D + + D ++++V S AG
Sbjct: 330 TEAIMVVMEFI---MDKIREK-------PDLTNKIVDTDSKQTQERDKQVKILVPNSTAG 379
Query: 132 CIIGKGGTKIKELRD 146
IIGKGG IK++++
Sbjct: 380 MIIGKGGAFIKQIKE 394
Score = 39.3 bits (90), Expect = 0.48, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG----PERILTIFAELENG 75
D ++++L+P+ AG +IGKGG+ I +++ + + V + P ER +TI + EN
Sbjct: 366 DKQVKILVPNSTAGMIIGKGGAFIKQIKEESGSYVQISQKPTDVSLQERCITIIGDKENN 425
Query: 76 LKVIEEVLPALDEIRQ 91
+ +L + E Q
Sbjct: 426 KNACKMILSKIVEDPQ 441
>gi|257206622|emb|CAX82939.1| KH-type splicing regulatory protein (FUSE binding protein 2)
[Schistosoma japonicum]
Length = 535
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 12/131 (9%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENG 75
GP V IP R G VIGKGG I +L+ND + V + PER +T+ +
Sbjct: 93 AGPRVVTTETAIPDRFVGLVIGKGGEQITQLQNDTQCKVQISQAGTPERTVTLTGTPQQ- 151
Query: 76 LKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIG 135
I+ + +I ++ GK G YN G I ++V +AG +IG
Sbjct: 152 ---IDHAKQMIGDIIERAGK--NGTPTTTTYNSTG------SITTIEMMVPGLKAGLVIG 200
Query: 136 KGGTKIKELRD 146
K G IK L++
Sbjct: 201 KNGETIKNLQE 211
>gi|51092069|gb|AAT94448.1| RE39088p [Drosophila melanogaster]
Length = 563
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 15/135 (11%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTIFAE 71
G +++L+P+ +G++IGKGG IA L+ D A V + PG ER+ I
Sbjct: 117 GETTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGS 176
Query: 72 LENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAG 131
E + V+E + +D+IR+K D + + D ++++V S AG
Sbjct: 177 TEAIMVVMEFI---MDKIREK-------PDLTNKIVDTDSKQTQERDKQVKILVPNSTAG 226
Query: 132 CIIGKGGTKIKELRD 146
IIGKGG IK++++
Sbjct: 227 MIIGKGGAFIKQIKE 241
Score = 39.3 bits (90), Expect = 0.48, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG----PERILTIFAELENG 75
D ++++L+P+ AG +IGKGG+ I +++ + + V + P ER +TI + EN
Sbjct: 213 DKQVKILVPNSTAGMIIGKGGAFIKQIKEESGSYVQISQKPTDVSLQERCITIIGDKENN 272
Query: 76 LKVIEEVLPALDEIRQ 91
+ +L + E Q
Sbjct: 273 KNACKMILSKIVEDPQ 288
>gi|226477992|emb|CAX72689.1| KH-type splicing regulatory protein (FUSE binding protein 2)
[Schistosoma japonicum]
Length = 535
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 12/131 (9%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENG 75
GP V IP R G VIGKGG I +L+ND + V + PER +T+ +
Sbjct: 93 AGPRVVTTETAIPDRFVGLVIGKGGEQITQLQNDTQCKVQISQAGTPERTVTLTGTPQQ- 151
Query: 76 LKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIG 135
I+ + +I ++ GK G YN G I ++V +AG +IG
Sbjct: 152 ---IDHAKQMIGDIIERAGK--NGTPTTTTYNSTG------SITTIEMMVPGLKAGLVIG 200
Query: 136 KGGTKIKELRD 146
K G IK L++
Sbjct: 201 KNGETIKNLQE 211
>gi|393905262|gb|EJD73914.1| hypothetical protein LOAG_18700 [Loa loa]
Length = 228
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 53/115 (46%), Gaps = 17/115 (14%)
Query: 32 AGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEIRQ 91
GS+IGK G +I +R+ A + + D PERI+TI K + L + Q
Sbjct: 13 VGSIIGKRGDHIKLIRDQSGAKINISDGSCPERIVTITGSTGTINKAFIMICAKLQQDLQ 72
Query: 92 KYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRD 146
+ K +RLIV +Q GCIIGKGG+KIKE+R+
Sbjct: 73 ALP-----------------NSIPKPPITMRLIVPATQCGCIIGKGGSKIKEIRE 110
>gi|170048061|ref|XP_001851517.1| nova [Culex quinquefasciatus]
gi|167870269|gb|EDS33652.1| nova [Culex quinquefasciatus]
Length = 534
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 15/133 (11%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTIFAELE 73
++ + L+PS AG++IGKGG IA L+ D A V + PG ER+ I ++
Sbjct: 25 DNYHFKTLVPSVAAGAIIGKGGETIASLQKDAGARVKMSKAHDFYPGTSERVCLISGTVD 84
Query: 74 NGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCI 133
L V++ + +D+IR+K D + D ++++V S AG I
Sbjct: 85 GILTVLDFI---IDKIREK-------PDMTKALTEADAKQAAERDKQVKVLVPNSTAGMI 134
Query: 134 IGKGGTKIKELRD 146
IGK G IK++++
Sbjct: 135 IGKAGAFIKQIKE 147
Score = 38.9 bits (89), Expect = 0.80, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP----ERILTIFAELEN 74
D ++++L+P+ AG +IGK G+ I +++ D + V + P ER +TI E EN
Sbjct: 119 DKQVKVLVPNSTAGMIIGKAGAFIKQIKEDSGSYVQISQKPKELTLQERCITIIGEKEN 177
>gi|357507881|ref|XP_003624229.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355499244|gb|AES80447.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 275
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 7/141 (4%)
Query: 7 QLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERIL 66
+LS KR +G DV R+++PS+ G VIGK G I ++R +A++ + D
Sbjct: 88 ELSAAKRAKG--QDVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEER 145
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVH 126
I ++ +++ + AL++I K G V IRL++
Sbjct: 146 VIIISSKDNDEMVTDAEKALEQIANLILKEDNSSFDASKLTAGHVAA-----NTIRLLIA 200
Query: 127 QSQAGCIIGKGGTKIKELRDT 147
SQAG +IG G I++LR++
Sbjct: 201 GSQAGGLIGMSGQNIEKLRNS 221
Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV------PDCPG---PERILTIFAELE 73
+RLLI AG +IG G NI +LRN A +TV P C +R++ + ++
Sbjct: 195 IRLLIAGSQAGGLIGMSGQNIEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVS 254
Query: 74 NGLKVIEEV 82
+K +EE+
Sbjct: 255 TVMKALEEI 263
>gi|357496469|ref|XP_003618523.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355493538|gb|AES74741.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 569
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 21/136 (15%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASV----TVPDCPGPERILTIFAE---- 71
D R L P R GS+IG+GG + +LR + KA + TVP C ER++T+++
Sbjct: 46 DTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGC--DERVVTVYSSSDET 103
Query: 72 --LENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
+++G K++ PA D + + + + + D GG + +L+V Q
Sbjct: 104 NTVDDGDKLVS---PAEDALFKIHDRVVAEDLHSDQEEEGG------PQVNAKLLVPSDQ 154
Query: 130 AGCIIGKGGTKIKELR 145
GC++GKGG ++ LR
Sbjct: 155 IGCVLGKGGQIVQNLR 170
>gi|357147442|ref|XP_003574345.1| PREDICTED: LOW QUALITY PROTEIN: poly(rC)-binding protein 1-like
[Brachypodium distachyon]
Length = 447
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 8/137 (5%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIF 69
KR+ G P D R+++P GS+IG+ G I RL + KA V V D P ER++ +
Sbjct: 38 KRWPGWPGDSVFRMVVPVXKVGSIIGRKGELIKRLVEETKARVRVLDGPVGATERVVLVS 97
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
+ E GL ++ PA+D + + + + G D G RL+V +Q
Sbjct: 98 GKEEPGL----DLPPAMDALIRVFKRVNGITDVAADSTTQTAAPPGV--CAARLLVPGAQ 151
Query: 130 AGCIIGKGGTKIKELRD 146
A +IGK G IK +++
Sbjct: 152 AINLIGKQGASIKAIQE 168
>gi|312380039|gb|EFR26147.1| hypothetical protein AND_07973 [Anopheles darlingi]
Length = 552
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 15/133 (11%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTIFAELE 73
++ + L+PS AG++IGKGG IA L+ D A V + PG ER+ I ++
Sbjct: 39 DNYHFKTLVPSVAAGAIIGKGGETIASLQKDAGARVKMSKSHDFYPGTTERVCLISGTVD 98
Query: 74 NGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCI 133
L V++ + +D+IR+K D + D ++++V S AG I
Sbjct: 99 GILTVLDFI---IDKIREK-------PDMTKALTEADAKQAQERDKQVKILVPNSTAGMI 148
Query: 134 IGKGGTKIKELRD 146
IGK G IK++++
Sbjct: 149 IGKAGAYIKQIKE 161
Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG----PERILTIFAELENG 75
D ++++L+P+ AG +IGK G+ I +++ + + V + P ER +TI E EN
Sbjct: 133 DKQVKILVPNSTAGMIIGKAGAYIKQIKEESGSYVQISQKPKDLTLQERCITIIGEKENN 192
Query: 76 LKVIEEVLPALDE 88
+ +L + E
Sbjct: 193 KVACKMILAKIVE 205
>gi|257205944|emb|CAX82623.1| putative KH-type splicing regulatory protein [Schistosoma
japonicum]
Length = 513
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 12/131 (9%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENG 75
GP V IP R G VIGKGG I +L+ND + V + PER +T+ +
Sbjct: 71 AGPRVVTTETAIPDRFVGLVIGKGGEQITQLQNDTQCKVQISQAGTPERTVTLTGTPQQ- 129
Query: 76 LKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIG 135
I+ + +I ++ GK G YN G I ++V +AG +IG
Sbjct: 130 ---IDHAKQMIGDIIERAGK--NGTPTTTTYNSTG------SITTIEMMVPGLKAGLVIG 178
Query: 136 KGGTKIKELRD 146
K G IK L++
Sbjct: 179 KNGETIKNLQE 189
>gi|449527609|ref|XP_004170802.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 546
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 13/132 (9%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PGP-ERILTIFAELENGLK 77
D R L P + GSVIG+GG + +LR D K+ + + + PG ER++TI++ N
Sbjct: 42 DTVYRYLCPVKKIGSVIGRGGEIVKQLRIDTKSKIRIGETVPGSDERVITIYSA-SNETN 100
Query: 78 VIEE----VLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCI 133
+EE V PA + + + + + + + GGG RL+V Q GCI
Sbjct: 101 SLEESSDYVSPAQEALFKIHDRVVADDYMDEDSEGGG------HQVTARLLVPSDQIGCI 154
Query: 134 IGKGGTKIKELR 145
IGKGG ++ +R
Sbjct: 155 IGKGGQIVQNIR 166
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 22/131 (16%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAE--LENG 75
+ LRL+ P+ G VIGKGG+ I ++R + KA++ V G + ++ I ++ E+
Sbjct: 270 EFSLRLICPTENIGGVIGKGGAIINQIRQETKAAIKVDSSATEGDDCLINISSKEFFEDS 329
Query: 76 LK-VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCII 134
+E L +K + G + RL+V S+ GC+I
Sbjct: 330 YSPTLEAALRLQPRCSEKVERDS-----------------GIISFTTRLLVPTSRIGCLI 372
Query: 135 GKGGTKIKELR 145
GKGG I ELR
Sbjct: 373 GKGGAIITELR 383
>gi|449447377|ref|XP_004141445.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 545
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 13/132 (9%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PGP-ERILTIFAELENGLK 77
D R L P + GSVIG+GG + +LR D K+ + + + PG ER++TI++ N
Sbjct: 42 DTVYRYLCPVKKIGSVIGRGGEIVKQLRIDTKSKIRIGETVPGSDERVITIYSA-SNETN 100
Query: 78 VIEE----VLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCI 133
+EE V PA + + + + + + + GGG RL+V Q GCI
Sbjct: 101 SLEESSDYVSPAQEALFKIHDRVVADDYMDEDSEGGG------HQVTARLLVPSDQIGCI 154
Query: 134 IGKGGTKIKELR 145
IGKGG ++ +R
Sbjct: 155 IGKGGQIVQNIR 166
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 22/131 (16%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAE--LENG 75
+ LRL+ P+ G VIGKGG+ I ++R + KA++ V G + ++ I ++ E+
Sbjct: 270 EFSLRLICPTENIGGVIGKGGAIINQIRQETKAAIKVDSSATEGDDCLINISSKEFFEDS 329
Query: 76 LK-VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCII 134
+E L +K + G + RL+V S+ GC+I
Sbjct: 330 YSPTLEAALRLQPRCSEKVERDS-----------------GIISFTTRLLVPTSRIGCLI 372
Query: 135 GKGGTKIKELR 145
GKGG I ELR
Sbjct: 373 GKGGAIITELR 383
>gi|296189557|ref|XP_002742821.1| PREDICTED: poly(rC)-binding protein 1 isoform 1 [Callithrix
jacchus]
Length = 375
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 17/131 (12%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G ++ R+R + A + + + PERI+T+ K
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIRKESGARIKILEGNCPERIITLTGPTNAIFKAFA 73
Query: 81 EVLPALDE-IRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
++ L+E I K +RL+V +Q G +IGKGG
Sbjct: 74 MIIYKLEEDINSSMTKSTAAS----------------RLVTLRLVVPATQCGSLIGKGGC 117
Query: 140 KIKELRDTFDA 150
KIKE+R + A
Sbjct: 118 KIKEIRKSTGA 128
Score = 38.9 bits (89), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPE 63
S+ + V LRL++P+ GS+IGKGG I +R A V V P+ E
Sbjct: 85 SSMTKSTAASRLVTLRLVVPATQCGSLIGKGGCKIKEIRKSTGAQVQVAGDMLPN--STE 142
Query: 64 RILTIFAELENGLKVIEEVLPALDEIRQKYGKGR 97
R +TI ++ K ++++ + E +G+
Sbjct: 143 RAITIAGVPQSVTKCVKQICLVMLETLSHSPQGK 176
>gi|357496471|ref|XP_003618524.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355493539|gb|AES74742.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 553
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 21/136 (15%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASV----TVPDCPGPERILTIFAE---- 71
D R L P R GS+IG+GG + +LR + KA + TVP C ER++T+++
Sbjct: 46 DTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGC--DERVVTVYSSSDET 103
Query: 72 --LENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
+++G K++ PA D + + + + + D GG + +L+V Q
Sbjct: 104 NTVDDGDKLVS---PAEDALFKIHDRVVAEDLHSDQEEEGG------PQVNAKLLVPSDQ 154
Query: 130 AGCIIGKGGTKIKELR 145
GC++GKGG ++ LR
Sbjct: 155 IGCVLGKGGQIVQNLR 170
>gi|186478468|ref|NP_001117282.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|5080792|gb|AAD39302.1|AC007576_25 Unknown protein [Arabidopsis thaliana]
gi|332190995|gb|AEE29116.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 479
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 6/136 (4%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PG-PERILTIFA---ELEN 74
D R L P + GS+IGKGG ++R++ K+++ + + PG ER++T+++ EL +
Sbjct: 43 DTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELNH 102
Query: 75 GLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCII 134
E V PALD + + + D DG + G K +R++V Q GC+I
Sbjct: 103 FGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLG-EKQTVTVRMLVPSDQIGCVI 161
Query: 135 GKGGTKIKELRDTFDA 150
GKGG I+ LR+ +A
Sbjct: 162 GKGGQVIQNLRNDTNA 177
Score = 40.4 bits (93), Expect = 0.25, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 24/41 (58%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
G V +R+L+PS G VIGKGG I LRND A + V
Sbjct: 141 GEKQTVTVRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRV 181
Score = 38.9 bits (89), Expect = 0.70, Method: Composition-based stats.
Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 4/36 (11%)
Query: 114 LGKDDYDI----RLIVHQSQAGCIIGKGGTKIKELR 145
+GKD D+ RL+V SQ GC+IGKGG I E+R
Sbjct: 345 VGKDANDLAISTRLLVSSSQIGCLIGKGGAVISEMR 380
>gi|312096639|ref|XP_003148731.1| hypothetical protein LOAG_13173 [Loa loa]
Length = 101
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 53/116 (45%), Gaps = 17/116 (14%)
Query: 32 AGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEIRQ 91
GS+IGK G +I +R+ A + + D PERI+TI K + L + Q
Sbjct: 2 VGSIIGKRGDHIKLIRDQSGAKINISDGSCPERIVTITGSTGTINKAFIMICAKLQQDLQ 61
Query: 92 KYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDT 147
+ K +RLIV +Q GCIIGKGG+KIKE+R+
Sbjct: 62 ALP-----------------NSIPKPPITMRLIVPATQCGCIIGKGGSKIKEIREV 100
>gi|296087899|emb|CBI35182.3| unnamed protein product [Vitis vinifera]
Length = 511
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 71/137 (51%), Gaps = 12/137 (8%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIF 69
KR+ G P + R+L+P++ GS+IG+ G I ++ + +A + + D P ER + +
Sbjct: 108 KRWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTAERAVMVS 167
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
A+ E + PA+D + + + + G +G + G GK RL+V SQ
Sbjct: 168 AKEEPD----SSLPPAMDGLLKVHKRIVDGLEGDSSHMPPG----GK--VSTRLLVAASQ 217
Query: 130 AGCIIGKGGTKIKELRD 146
AG +IGK G +K +++
Sbjct: 218 AGSLIGKQGGTVKSIQE 234
>gi|224137186|ref|XP_002327061.1| predicted protein [Populus trichocarpa]
gi|222835376|gb|EEE73811.1| predicted protein [Populus trichocarpa]
Length = 357
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 71/146 (48%), Gaps = 18/146 (12%)
Query: 15 RGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--PERILTIFA-- 70
R DV R+++PS G VIGK G I ++R D KA++ + D ER++ I +
Sbjct: 45 RQARADVIFRIVVPSGKIGKVIGKQGHRIQKIREDTKATIKIADAVARHEERVIIISSKE 104
Query: 71 ------ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLI 124
+ EN L+ I E++ L+E G G E G N G V IRL+
Sbjct: 105 NENGATDAENALQRIAELI--LNEDDGGSSAGGGVEI-GKLVNAGHVAA-----NTIRLL 156
Query: 125 VHQSQAGCIIGKGGTKIKELRDTFDA 150
+ SQAG +IG G I +LR++ A
Sbjct: 157 IAGSQAGSLIGMSGQNIVKLRNSSGA 182
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 20/138 (14%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV------PDCPGP---ERILTIFAELE 73
+RLLI AGS+IG G NI +LRN A +TV P C +R++ I ++
Sbjct: 153 IRLLIAGSQAGSLIGMSGQNIVKLRNSSGAMITVLAPNQLPLCASAYESDRVVQISGDVP 212
Query: 74 NGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGV-----GGLGKDDY-DIRLIVHQ 127
LK +EE+ L E + YN V DY + ++V +
Sbjct: 213 VVLKALEEIGCQLRE-----NPPKQVISISPSYNYSAVPFQQYAPQAAADYVTMEMMVPE 267
Query: 128 SQAGCIIGKGGTKIKELR 145
+ G +IG+ G+ I +R
Sbjct: 268 TMMGGLIGRSGSNISRIR 285
>gi|390177062|ref|XP_003736268.1| GA30025, isoform B [Drosophila pseudoobscura pseudoobscura]
gi|388858892|gb|EIM52341.1| GA30025, isoform B [Drosophila pseudoobscura pseudoobscura]
Length = 714
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 15/135 (11%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTIFAE 71
G +++L+P+ +G++IGKGG IA L+ D A V + PG ER+ I
Sbjct: 238 GETTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGS 297
Query: 72 LENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAG 131
E + V++ + +D+IR+K D + D ++++V S AG
Sbjct: 298 TEAIMVVLDFI---MDKIREK-------PDLTTKIIDAESKQTQERDKQVKILVPNSTAG 347
Query: 132 CIIGKGGTKIKELRD 146
IIGKGG IK++++
Sbjct: 348 MIIGKGGAFIKQIKE 362
Score = 42.0 bits (97), Expect = 0.077, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG----PERILTIFAELENG 75
D ++++L+P+ AG +IGKGG+ I +++ D + V + P ER +TI + EN
Sbjct: 334 DKQVKILVPNSTAGMIIGKGGAFIKQIKEDSGSYVQISQKPKDVSLQERCITIIGDKENN 393
Query: 76 LKVIEEVLPALDEIRQ 91
+ +L + E Q
Sbjct: 394 KNACKMILSKIVEDPQ 409
>gi|161078118|ref|NP_001036691.1| pasilla, isoform I [Drosophila melanogaster]
gi|113194762|gb|ABI31151.1| pasilla, isoform I [Drosophila melanogaster]
Length = 519
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 15/135 (11%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTIFAE 71
G +++L+P+ +G++IGKGG IA L+ D A V + PG ER+ I
Sbjct: 73 GETTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGS 132
Query: 72 LENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAG 131
E + V+E + +D+IR+K D + + D ++++V S AG
Sbjct: 133 TEAIMVVMEFI---MDKIREK-------PDLTNKIVDTDSKQTQERDKQVKILVPNSTAG 182
Query: 132 CIIGKGGTKIKELRD 146
IIGKGG IK++++
Sbjct: 183 MIIGKGGAFIKQIKE 197
Score = 39.3 bits (90), Expect = 0.57, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG----PERILTIFAELENG 75
D ++++L+P+ AG +IGKGG+ I +++ + + V + P ER +TI + EN
Sbjct: 169 DKQVKILVPNSTAGMIIGKGGAFIKQIKEESGSYVQISQKPTDVSLQERCITIIGDKENN 228
Query: 76 LKVIEEVLPALDEIRQ 91
+ +L + E Q
Sbjct: 229 KNACKMILSKIVEDPQ 244
>gi|76154163|gb|AAX25658.2| SJCHGC08372 protein [Schistosoma japonicum]
Length = 160
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 18/144 (12%)
Query: 7 QLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG- 61
++S + +V ++L+PS AG++IGKGG I ++N A V + PG
Sbjct: 29 KISEVLTLKPAKGNVHFKILVPSIAAGAIIGKGGEAITEIQNQTSAKVKMSKANAFYPGT 88
Query: 62 PERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDY-D 120
ER+ I E+ L+V + + + E + K G G + + +
Sbjct: 89 TERVCLIVGTTESILRVFQYISEKVYEKPESIAK------------TGCEGRIPTERHKQ 136
Query: 121 IRLIVHQSQAGCIIGKGGTKIKEL 144
++++V S AG IIGKGG+ IKEL
Sbjct: 137 VKILVPNSTAGMIIGKGGSFIKEL 160
>gi|24645368|ref|NP_731355.1| pasilla, isoform D [Drosophila melanogaster]
gi|23170799|gb|AAN13428.1| pasilla, isoform D [Drosophila melanogaster]
Length = 583
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 15/135 (11%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTIFAE 71
G +++L+P+ +G++IGKGG IA L+ D A V + PG ER+ I
Sbjct: 73 GETTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGS 132
Query: 72 LENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAG 131
E + V+E + +D+IR+K D + + D ++++V S AG
Sbjct: 133 TEAIMVVMEFI---MDKIREK-------PDLTNKIVDTDSKQTQERDKQVKILVPNSTAG 182
Query: 132 CIIGKGGTKIKELRD 146
IIGKGG IK++++
Sbjct: 183 MIIGKGGAFIKQIKE 197
Score = 39.3 bits (90), Expect = 0.60, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG----PERILTIFAELENG 75
D ++++L+P+ AG +IGKGG+ I +++ + + V + P ER +TI + EN
Sbjct: 169 DKQVKILVPNSTAGMIIGKGGAFIKQIKEESGSYVQISQKPTDVSLQERCITIIGDKENN 228
Query: 76 LKVIEEVLPALDEIRQ 91
+ +L + E Q
Sbjct: 229 KNACKMILSKIVEDPQ 244
>gi|47229298|emb|CAG04050.1| unnamed protein product [Tetraodon nigroviridis]
Length = 455
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 14/114 (12%)
Query: 33 GSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEIRQK 92
GS+IGK G ++ ++R + A + + + PERI+T+ + K ++ L+E
Sbjct: 53 GSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTTSIFKAFSMIIEKLEE---- 108
Query: 93 YGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRD 146
D K IRL+V SQ G +IGKGG KIKE+R+
Sbjct: 109 --------DISTSMTNST--ATSKPPVTIRLVVPASQCGSLIGKGGCKIKEIRE 152
>gi|347968782|ref|XP_312014.5| AGAP002896-PA [Anopheles gambiae str. PEST]
gi|333467844|gb|EAA08028.5| AGAP002896-PA [Anopheles gambiae str. PEST]
Length = 537
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 15/133 (11%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTIFAELE 73
++ + L+PS AG++IGKGG IA L+ D A V + PG ERI I +E
Sbjct: 22 DNYHFKTLVPSVAAGAIIGKGGETIASLQKDAGARVKMSKAHDFYPGTTERICLISGTVE 81
Query: 74 NGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCI 133
L V++ + D+IR+K D + D ++++V + AG I
Sbjct: 82 GILAVLDFI---TDKIREK-------PDITKALTEADAKQAQERDKQVKILVPNTTAGMI 131
Query: 134 IGKGGTKIKELRD 146
IGK G IK++++
Sbjct: 132 IGKAGAYIKQIKE 144
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG----PERILTIFAELENG 75
D ++++L+P+ AG +IGK G+ I +++ + + V + P ER +TI E EN
Sbjct: 116 DKQVKILVPNTTAGMIIGKAGAYIKQIKEESGSYVQISQKPKDLTLQERCITIIGEKENN 175
Query: 76 LKVIEEVLPALDE 88
+ +L + E
Sbjct: 176 RIACKMILAKIVE 188
>gi|24656342|ref|NP_665890.2| bancal, isoform B [Drosophila melanogaster]
gi|23240206|gb|AAM68390.2| bancal, isoform B [Drosophila melanogaster]
Length = 413
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 28/30 (93%)
Query: 117 DDYDIRLIVHQSQAGCIIGKGGTKIKELRD 146
+D+D+RL++HQS AGC+IGKGG KIKE+RD
Sbjct: 10 EDFDVRLLIHQSLAGCVIGKGGQKIKEIRD 39
>gi|76157738|gb|AAX28573.2| SJCHGC01935 protein [Schistosoma japonicum]
Length = 263
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 12/131 (9%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENG 75
GP V IP R G VIGKGG I +L+ND + V + PER +T+ +
Sbjct: 93 AGPRVVTTETAIPDRFVGLVIGKGGEQITQLQNDTQCKVQISQAGTPERTVTLTGTPQQ- 151
Query: 76 LKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIG 135
I+ + +I ++ GK G YN G I ++V +AG +IG
Sbjct: 152 ---IDHAKQMIGDIIERAGK--NGTPTTTTYNSTG------SITTIEMMVPGLKAGLVIG 200
Query: 136 KGGTKIKELRD 146
K G IK L++
Sbjct: 201 KNGETIKNLQE 211
>gi|24645366|ref|NP_731354.1| pasilla, isoform B [Drosophila melanogaster]
gi|11526802|gb|AAG36787.1|AF220420_1 PASILLA splice variant 1 [Drosophila melanogaster]
gi|11526804|gb|AAG36788.1|AF220421_1 PASILLA splice variant 2 [Drosophila melanogaster]
gi|23170798|gb|AAN13427.1| pasilla, isoform B [Drosophila melanogaster]
Length = 475
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 15/135 (11%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTIFAE 71
G +++L+P+ +G++IGKGG IA L+ D A V + PG ER+ I
Sbjct: 29 GETTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGS 88
Query: 72 LENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAG 131
E + V+E + +D+IR+K D + + D ++++V S AG
Sbjct: 89 TEAIMVVMEFI---MDKIREK-------PDLTNKIVDTDSKQTQERDKQVKILVPNSTAG 138
Query: 132 CIIGKGGTKIKELRD 146
IIGKGG IK++++
Sbjct: 139 MIIGKGGAFIKQIKE 153
Score = 38.9 bits (89), Expect = 0.64, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG----PERILTIFAELENG 75
D ++++L+P+ AG +IGKGG+ I +++ + + V + P ER +TI + EN
Sbjct: 125 DKQVKILVPNSTAGMIIGKGGAFIKQIKEESGSYVQISQKPTDVSLQERCITIIGDKENN 184
Query: 76 LKVIEEVLPALDEIRQ 91
+ +L + E Q
Sbjct: 185 KNACKMILSKIVEDPQ 200
>gi|261278393|gb|ACX61582.1| GH20457p [Drosophila melanogaster]
Length = 413
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 28/30 (93%)
Query: 117 DDYDIRLIVHQSQAGCIIGKGGTKIKELRD 146
+D+D+RL++HQS AGC+IGKGG KIKE+RD
Sbjct: 10 EDFDVRLLIHQSLAGCVIGKGGQKIKEIRD 39
>gi|390177070|ref|XP_003736272.1| GA30025, isoform F [Drosophila pseudoobscura pseudoobscura]
gi|388858896|gb|EIM52345.1| GA30025, isoform F [Drosophila pseudoobscura pseudoobscura]
Length = 800
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 15/135 (11%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTIFAE 71
G +++L+P+ +G++IGKGG IA L+ D A V + PG ER+ I
Sbjct: 260 GETTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGS 319
Query: 72 LENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAG 131
E + V++ + +D+IR+K D + D ++++V S AG
Sbjct: 320 TEAIMVVLDFI---MDKIREK-------PDLTTKIIDAESKQTQERDKQVKILVPNSTAG 369
Query: 132 CIIGKGGTKIKELRD 146
IIGKGG IK++++
Sbjct: 370 MIIGKGGAFIKQIKE 384
Score = 42.0 bits (97), Expect = 0.094, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG----PERILTIFAELENG 75
D ++++L+P+ AG +IGKGG+ I +++ D + V + P ER +TI + EN
Sbjct: 356 DKQVKILVPNSTAGMIIGKGGAFIKQIKEDSGSYVQISQKPKDVSLQERCITIIGDKENN 415
Query: 76 LKVIEEVLPALDEIRQ 91
+ +L + E Q
Sbjct: 416 KNACKMILSKIVEDPQ 431
>gi|170580792|ref|XP_001895410.1| KH domain containing protein [Brugia malayi]
gi|158597654|gb|EDP35742.1| KH domain containing protein [Brugia malayi]
Length = 439
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 77/149 (51%), Gaps = 28/149 (18%)
Query: 15 RGGP------------NDVELRLLIPSRVAGSVIGKGGSNIARLRND----FKASVTVPD 58
RGGP N V++++LIPS G++IGKGG + L+++ + S
Sbjct: 16 RGGPATKKAHVSETEDNMVQVKVLIPSAAVGALIGKGGETMRNLKSESGCRLQMSKNQEV 75
Query: 59 CPGP-ERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKD 117
PG ERI + ++ + LKV + + L++IR+K D ++ G+ +
Sbjct: 76 YPGTNERICLVKGKIASVLKVSDVI---LEKIREKVDNN----TPSDIFDHKGM----ER 124
Query: 118 DYDIRLIVHQSQAGCIIGKGGTKIKELRD 146
+++L+V + AG +IGK G +IKE+R+
Sbjct: 125 KNEMKLVVPNTSAGMVIGKSGARIKEIRE 153
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 12/73 (16%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP-------ERILTIFAELEN 74
E++L++P+ AG VIGK G+ I +R A++ V G ERI+TI AE +
Sbjct: 127 EMKLVVPNTSAGMVIGKSGARIKEIREQTGANIQVYPKAGSQEAKVSQERIITIAAEQDE 186
Query: 75 GL-----KVIEEV 82
L +V+E+V
Sbjct: 187 VLMDALQRVLEKV 199
>gi|402587695|gb|EJW81630.1| KH domain-containing protein [Wuchereria bancrofti]
Length = 273
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 13/85 (15%)
Query: 62 PERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDI 121
P R+LT+ A EN + E++P LDE R D + + + D ++
Sbjct: 2 PFRVLTLTATTENIANCLREIIPRLDENR-------------DDDHDRRMKKTDRCDSEM 48
Query: 122 RLIVHQSQAGCIIGKGGTKIKELRD 146
+++VH+S AG +IG+GG++IKELR+
Sbjct: 49 KVLVHESHAGAVIGRGGSRIKELRE 73
Score = 35.4 bits (80), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFAELENGL 76
D E+++L+ AG+VIG+GGS I LR A + V P ERI+ + E+E +
Sbjct: 45 DSEMKVLVHESHAGAVIGRGGSRIKELREKTGAQLKVFSRCAPQSTERIVLLNGEVEKII 104
Query: 77 KVIEEVLPALDEI 89
I ++ L EI
Sbjct: 105 DCINIIIDVLKEI 117
>gi|358335626|dbj|GAA29562.2| RNA-binding protein Nova [Clonorchis sinensis]
Length = 673
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 19/135 (14%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTIFAELEN 74
+V ++L+PS AG++IGKGG I ++N A V + PG ER+ I +++
Sbjct: 27 NVHFKILVPSIAAGAIIGKGGEAITDIQNKTSAKVKMSKANDFYPGTTERVCLIVGTIDS 86
Query: 75 GLKVIEEVLPALDEIRQKY--GKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
L+V + + + E + +GG + + ++++V S AG
Sbjct: 87 ILRVFQYISEKIYEKPESILRSTNKGGRMPAERHK------------QVKILVPNSTAGI 134
Query: 133 IIGKGGTKIKELRDT 147
IIGKGG+ IKE++++
Sbjct: 135 IIGKGGSFIKEVKES 149
>gi|345495410|ref|XP_001602171.2| PREDICTED: hypothetical protein LOC100118119 [Nasonia vitripennis]
Length = 533
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 13/136 (9%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTIFA 70
GG L++L+P AG++IGKGG IA+L+ D A V + PG ER+ I
Sbjct: 40 GGDGTYHLKVLVPGVAAGAIIGKGGETIAQLQKDTGARVKMSKSHDFYPGTTERVCLITG 99
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
++ + V++ ++ + E K D G + D ++++V S A
Sbjct: 100 SVDAIMAVMDFIMEKIREKPDLTTKTTVDFDSGK--------ATAERDKQVKILVPNSTA 151
Query: 131 GCIIGKGGTKIKELRD 146
G IIGK G IK++++
Sbjct: 152 GMIIGKAGNYIKQIKE 167
Score = 35.8 bits (81), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVP----DCPGPERILTIFAELENG 75
D ++++L+P+ AG +IGK G+ I +++ + + V + D ER +T+ E EN
Sbjct: 139 DKQVKILVPNSTAGMIIGKAGNYIKQIKEESGSYVQISQKAKDVSLQERCITVIGEKENN 198
Query: 76 LKVIEEVL 83
+ +L
Sbjct: 199 RNALLMIL 206
>gi|79317957|ref|NP_001031044.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|222424209|dbj|BAH20063.1| AT1G14170 [Arabidopsis thaliana]
gi|332190994|gb|AEE29115.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 446
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 74/137 (54%), Gaps = 6/137 (4%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PG-PERILTIFA---ELE 73
+D R L P + GS+IGKGG ++R++ K+++ + + PG ER++T+++ EL
Sbjct: 9 HDTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELN 68
Query: 74 NGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCI 133
+ E V PALD + + + D DG + G K +R++V Q GC+
Sbjct: 69 HFGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLG-EKQTVTVRMLVPSDQIGCV 127
Query: 134 IGKGGTKIKELRDTFDA 150
IGKGG I+ LR+ +A
Sbjct: 128 IGKGGQVIQNLRNDTNA 144
Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 28/53 (52%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTI 68
G V +R+L+PS G VIGKGG I LRND A + V P LT+
Sbjct: 108 GEKQTVTVRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVIKDHLPACALTL 160
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 114 LGKDDYDI----RLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
+GKD D+ RL+V SQ GC+IGKGG I E+R A
Sbjct: 312 VGKDANDLAISTRLLVSSSQIGCLIGKGGAVISEMRSVTRA 352
>gi|25012554|gb|AAN71378.1| RE36563p, partial [Drosophila melanogaster]
Length = 605
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 15/129 (11%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTIFAELENGLK 77
+++L+P+ +G++IGKGG IA L+ D A V + PG ER+ I E +
Sbjct: 101 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEAIMV 160
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKG 137
V+E + +D+IR+K D + + D ++++V S AG IIGKG
Sbjct: 161 VMEFI---MDKIREK-------PDLTNKIVDTDSKQTQERDKQVKILVPNSTAGMIIGKG 210
Query: 138 GTKIKELRD 146
G IK++++
Sbjct: 211 GAFIKQIKE 219
Score = 39.3 bits (90), Expect = 0.51, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG----PERILTIFAELENG 75
D ++++L+P+ AG +IGKGG+ I +++ + + V + P ER +TI + EN
Sbjct: 191 DKQVKILVPNSTAGMIIGKGGAFIKQIKEESGSYVQISQKPTDVSLQERCITIIGDKENN 250
Query: 76 LKVIEEVLPALDEIRQ 91
+ +L + E Q
Sbjct: 251 KNACKMILSKIVEDPQ 266
>gi|429858530|gb|ELA33346.1| kh domain rna-binding protein [Colletotrichum gloeosporioides Nara
gc5]
Length = 377
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 69/132 (52%), Gaps = 20/132 (15%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGL 76
+ + LR ++ S+ AG +IGK G N+A LR++ KA V+ +R+LTI E++
Sbjct: 47 SQLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTITGEIQAIS 106
Query: 77 KVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCII 134
K V AL E G G+GG+ +++ + I+L++ +Q G II
Sbjct: 107 KAYAIVAQALLE----------------GAPAMGMGGVVQNNGTHPIKLLISHNQMGTII 150
Query: 135 GKGGTKIKELRD 146
G+ G KIK ++D
Sbjct: 151 GRQGLKIKHIQD 162
>gi|413933963|gb|AFW68514.1| hypothetical protein ZEAMMB73_983755 [Zea mays]
Length = 464
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 21/144 (14%)
Query: 18 PNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PGP-ERILTIF------ 69
P + R+L P++ GSV+G+GG + LR + KA + V D PG ER++ IF
Sbjct: 40 PIETIYRILCPAKKIGSVLGRGGDIVKALREETKAKIRVADSIPGADERVIIIFNYQNQP 99
Query: 70 --------AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDI 121
++ +GL ++ A D + + + K E + + DD
Sbjct: 100 ELTDEAAEKQISDGLGNMKPHCFAQDALLKIHDKIVADEIYDEVAHDE-----SSDDVTA 154
Query: 122 RLIVHQSQAGCIIGKGGTKIKELR 145
R++V +Q GC++GKGG+ I++LR
Sbjct: 155 RILVQGNQVGCLLGKGGSIIQQLR 178
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 30/143 (20%)
Query: 14 FRGGPN-------DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV----PDCPGP 62
+R GP + +R+L S + GSVIGK G+N+ R+ A + V D G
Sbjct: 276 YRSGPQYPVSETEEFSIRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASGE 335
Query: 63 ERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIR 122
I+ E+ E + P ++ + + K + K R
Sbjct: 336 RLIIVSSNEIPT-----EPISPTIEALILLHDKVSASSE--------------KHHSSTR 376
Query: 123 LIVHQSQAGCIIGKGGTKIKELR 145
L+V ++ GCI+G+GG I E+R
Sbjct: 377 LVVPSNKVGCILGEGGQVITEMR 399
>gi|194903195|ref|XP_001980824.1| GG16798 [Drosophila erecta]
gi|190652527|gb|EDV49782.1| GG16798 [Drosophila erecta]
Length = 572
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 15/135 (11%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTIFAE 71
G +++L+P+ +G++IGKGG IA L+ D A V + PG ER+ I
Sbjct: 62 GETTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGS 121
Query: 72 LENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAG 131
E + V+E + +D+IR+K D + + D ++++V S AG
Sbjct: 122 TEAIMVVLEFI---MDKIREK-------PDLTNKIVDAESKQTQERDKQVKILVPNSTAG 171
Query: 132 CIIGKGGTKIKELRD 146
IIGKGG IK++++
Sbjct: 172 MIIGKGGAFIKQIKE 186
Score = 38.5 bits (88), Expect = 0.88, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG----PERILTIFAELENG 75
D ++++L+P+ AG +IGKGG+ I +++ + + V + P ER +TI + EN
Sbjct: 158 DKQVKILVPNSTAGMIIGKGGAFIKQIKEESGSYVQISQKPKDVSLQERCITIIGDKENN 217
Query: 76 LKVIEEVLPALDEIRQ 91
+ +L + E Q
Sbjct: 218 KNACKMILSKIVEDPQ 233
>gi|307136423|gb|ADN34230.1| hypothetical protein [Cucumis melo subsp. melo]
Length = 331
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 70/133 (52%), Gaps = 13/133 (9%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--PERILTIFA-ELENG 75
+DV R+++PS+ G VIGK G I ++R + KA++ + D ER++ I + + EN
Sbjct: 67 HDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDNENS 126
Query: 76 LKVIEEVLPALDEIRQKYGKGRGGEDGGDGYN-GGGVGGLGKDDYDIRLIVHQSQAGCII 134
+ E+ L + + K EDG G G + + IRL++ SQAG +I
Sbjct: 127 VTDAEKALQQIAALILK-------EDGSSIEELKVGTGHVAAN--TIRLLIAGSQAGSLI 177
Query: 135 GKGGTKIKELRDT 147
G G I++LR++
Sbjct: 178 GASGQNIEKLRNS 190
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV------PDCPGP---ERILTIFAELE 73
+RLLI AGS+IG G NI +LRN AS+T+ P C +R++ I ++
Sbjct: 164 IRLLIAGSQAGSLIGASGQNIEKLRNSSGASITILAPNQLPLCASAHESDRVVQISGDIL 223
Query: 74 NGLKVIEEV 82
LK +EE+
Sbjct: 224 AVLKALEEI 232
>gi|291402366|ref|XP_002717547.1| PREDICTED: poly(rC) binding protein 2-like [Oryctolagus cuniculus]
Length = 334
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 16/138 (11%)
Query: 14 FRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 6 IEGGLNVTLTIRLLMHGKEVGSIIGKKGESV-KMREESGARINISEGNCPERIITLAGPT 64
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
K ++ L+E D + +RL+V SQ G
Sbjct: 65 NAIFKAFAMIIDKLEE------------DISSSMTNSTAAS--RPPVTLRLVVPASQCGS 110
Query: 133 IIGKGGTKIKELRDTFDA 150
+IGKGG KIKE+R++ A
Sbjct: 111 LIGKGGCKIKEIRESTGA 128
Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 97 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGIPQSI 154
Query: 76 LKVIEEV-LPALDEIRQKYGKG 96
++ ++++ + L+ + Q KG
Sbjct: 155 IECVKQICVVMLETLSQSPPKG 176
>gi|161078120|ref|NP_001036697.1| pasilla, isoform J [Drosophila melanogaster]
gi|19527741|gb|AAL89985.1| AT03366p [Drosophila melanogaster]
gi|113194765|gb|ABI31154.1| pasilla, isoform J [Drosophila melanogaster]
Length = 539
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 15/135 (11%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTIFAE 71
G +++L+P+ +G++IGKGG IA L+ D A V + PG ER+ I
Sbjct: 29 GETTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGS 88
Query: 72 LENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAG 131
E + V+E + +D+IR+K D + + D ++++V S AG
Sbjct: 89 TEAIMVVMEFI---MDKIREK-------PDLTNKIVDTDSKQTQERDKQVKILVPNSTAG 138
Query: 132 CIIGKGGTKIKELRD 146
IIGKGG IK++++
Sbjct: 139 MIIGKGGAFIKQIKE 153
Score = 38.9 bits (89), Expect = 0.77, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG----PERILTIFAELENG 75
D ++++L+P+ AG +IGKGG+ I +++ + + V + P ER +TI + EN
Sbjct: 125 DKQVKILVPNSTAGMIIGKGGAFIKQIKEESGSYVQISQKPTDVSLQERCITIIGDKENN 184
Query: 76 LKVIEEVLPALDEIRQ 91
+ +L + E Q
Sbjct: 185 KNACKMILSKIVEDPQ 200
>gi|357449597|ref|XP_003595075.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355484123|gb|AES65326.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 470
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 72/143 (50%), Gaps = 14/143 (9%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV--PDCPGPERILTIF 69
+R+ G P D RL++P G +IG+ G I +L ++ KA V V D P+RI+ I
Sbjct: 61 QRWPGWPGDCVFRLIVPVGKVGGIIGRKGDLIKKLCDETKARVRVLDADLGIPDRIILIS 120
Query: 70 A--ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQ 127
ELE + PA+D + + + + G + D N G G IRL+V
Sbjct: 121 GKEELEAAIS------PAMDAVIRIFKRVSGLSE-TDSENKGPA---GVTLCSIRLLVAS 170
Query: 128 SQAGCIIGKGGTKIKELRDTFDA 150
+QA +IGK GT I+ ++++ A
Sbjct: 171 TQAISLIGKQGTIIRSIQESSGA 193
>gi|156102214|ref|XP_001616800.1| RNA-binding protein Nova-1 [Plasmodium vivax Sal-1]
gi|148805674|gb|EDL47073.1| RNA-binding protein Nova-1, putative [Plasmodium vivax]
Length = 335
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 18/133 (13%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRN----DFKASVTVPDCPGP-ERILTIFAELENGLK 77
+++L+ + VAGSVIGK GS I + N K S T P ER+L + + E +
Sbjct: 20 VKMLVNNLVAGSVIGKNGSIITSIENKTGCSLKLSPTNSYFPNTQERVLVLCGKQE---Q 76
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKG 137
+ +L LD+IRQ ++ D N Y R++V +S IIGKG
Sbjct: 77 INNALLIILDKIRQI-----TTQNFQDKQNMNT-----SPKYTCRIVVPKSAVSAIIGKG 126
Query: 138 GTKIKELRDTFDA 150
G +IK+L+DT A
Sbjct: 127 GQQIKQLQDTTGA 139
>gi|161078112|ref|NP_001036692.1| pasilla, isoform F [Drosophila melanogaster]
gi|164449760|ref|NP_731351.3| pasilla, isoform H [Drosophila melanogaster]
gi|164449762|ref|NP_731352.3| pasilla, isoform G [Drosophila melanogaster]
gi|320542556|ref|NP_001189199.1| pasilla, isoform N [Drosophila melanogaster]
gi|320542564|ref|NP_001189203.1| pasilla, isoform O [Drosophila melanogaster]
gi|11526806|gb|AAG36789.1|AF220422_1 PASILLA splice variant 3 [Drosophila melanogaster]
gi|158030195|gb|AAF54377.3| pasilla, isoform F [Drosophila melanogaster]
gi|158030196|gb|AAN13425.2| pasilla, isoform G [Drosophila melanogaster]
gi|158030197|gb|AAN13424.2| pasilla, isoform H [Drosophila melanogaster]
gi|318068743|gb|ADV37290.1| pasilla, isoform N [Drosophila melanogaster]
gi|318068747|gb|ADV37294.1| pasilla, isoform O [Drosophila melanogaster]
Length = 572
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 15/135 (11%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTIFAE 71
G +++L+P+ +G++IGKGG IA L+ D A V + PG ER+ I
Sbjct: 62 GETTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGS 121
Query: 72 LENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAG 131
E + V+E + +D+IR+K D + + D ++++V S AG
Sbjct: 122 TEAIMVVMEFI---MDKIREK-------PDLTNKIVDTDSKQTQERDKQVKILVPNSTAG 171
Query: 132 CIIGKGGTKIKELRD 146
IIGKGG IK++++
Sbjct: 172 MIIGKGGAFIKQIKE 186
Score = 38.9 bits (89), Expect = 0.78, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG----PERILTIFAELENG 75
D ++++L+P+ AG +IGKGG+ I +++ + + V + P ER +TI + EN
Sbjct: 158 DKQVKILVPNSTAGMIIGKGGAFIKQIKEESGSYVQISQKPTDVSLQERCITIIGDKENN 217
Query: 76 LKVIEEVLPALDEIRQ 91
+ +L + E Q
Sbjct: 218 KNACKMILSKIVEDPQ 233
>gi|225463940|ref|XP_002269249.1| PREDICTED: poly(rC)-binding protein 3-like [Vitis vinifera]
Length = 442
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 72/140 (51%), Gaps = 12/140 (8%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIF 69
KR+ G P + R+L+P++ GS+IG+ G I ++ + +A + + D P ER + +
Sbjct: 39 KRWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTAERAVMVS 98
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
A+ E + PA+D + + + + G +G + G GK RL+V SQ
Sbjct: 99 AKEEPD----SSLPPAMDGLLKVHKRIVDGLEGDSSHMPPG----GK--VSTRLLVAASQ 148
Query: 130 AGCIIGKGGTKIKELRDTFD 149
AG +IGK G +K +++ +
Sbjct: 149 AGSLIGKQGGTVKSIQEASN 168
>gi|221060388|ref|XP_002260839.1| RNA-binding protein [Plasmodium knowlesi strain H]
gi|193810913|emb|CAQ42811.1| RNA-binding protein, putative [Plasmodium knowlesi strain H]
Length = 334
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 67/133 (50%), Gaps = 18/133 (13%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRN----DFKASVTVPDCPGP-ERILTIFAELENGLK 77
+++L+ + VAGSVIGK GS I + N K S T P ER+L + + E +
Sbjct: 19 VKMLVNNLVAGSVIGKNGSIITSIENKTGCSLKLSPTNSYFPNTQERVLVLCGKQE---Q 75
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKG 137
+ +L LD+IRQ + D N V Y R+++ +S A IIGKG
Sbjct: 76 INNALLIILDKIRQI-----TVQSFQDKQNMNTV-----PKYTCRIVIPKSAASAIIGKG 125
Query: 138 GTKIKELRDTFDA 150
G +IK+L+D+ A
Sbjct: 126 GQQIKQLQDSTGA 138
>gi|195107855|ref|XP_001998509.1| GI24011 [Drosophila mojavensis]
gi|193915103|gb|EDW13970.1| GI24011 [Drosophila mojavensis]
Length = 574
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 15/135 (11%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PGP-ERILTIFAE 71
G +++L+P+ +G++IGKGG IA L+ D A V + PG ER+ I
Sbjct: 62 GDTTFHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGS 121
Query: 72 LENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAG 131
+E + V++ ++ D+IR+K D + D ++++V S AG
Sbjct: 122 VEGIMTVVDFIM---DKIREK-------PDLTTKIIDAESKQAQERDKQVKILVPNSTAG 171
Query: 132 CIIGKGGTKIKELRD 146
IIGKGG IK++++
Sbjct: 172 MIIGKGGAFIKQIKE 186
Score = 38.5 bits (88), Expect = 0.85, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG----PERILTIFAELENG 75
D ++++L+P+ AG +IGKGG+ I +++ + + V + P ER +TI + EN
Sbjct: 158 DKQVKILVPNSTAGMIIGKGGAFIKQIKEESGSYVQISQKPKDVSLQERCITIIGDKENN 217
Query: 76 LKVIEEVLPALDEIRQ 91
+ +L + E Q
Sbjct: 218 KNACKMILSKIVEDPQ 233
>gi|226528431|ref|NP_001149906.1| nucleic acid binding protein [Zea mays]
gi|195635381|gb|ACG37159.1| nucleic acid binding protein [Zea mays]
Length = 448
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 9/141 (6%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIF 69
KR+ G P D RL++P GS+IG+ G I RL + KA V + + P ERI+ +
Sbjct: 37 KRWPGWPGDSVFRLVVPVLKVGSIIGRKGELIKRLVEETKARVRILEGPVGATERIVLVS 96
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
+ + L E+ PA+D + + + G DG D RL+V +Q
Sbjct: 97 GKEDPDL----ELPPAMDALMRVFKXVTGITDGA---AEXTQAAATPDVCAARLLVPGAQ 149
Query: 130 AGCIIGKGGTKIKELRDTFDA 150
A +IGK G IK ++++ A
Sbjct: 150 AINLIGKQGATIKAIQESTSA 170
>gi|195572282|ref|XP_002104125.1| GD18616 [Drosophila simulans]
gi|194200052|gb|EDX13628.1| GD18616 [Drosophila simulans]
Length = 330
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 15/135 (11%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PGP-ERILTIFAE 71
G + +++L+P+ +G++IGKGG IA L+ D A V + PG ER+ I
Sbjct: 77 GDSTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGS 136
Query: 72 LENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAG 131
E + V+E ++ D+IR+K D + + D ++++V S AG
Sbjct: 137 TEAIMVVMEFIM---DKIREK-------PDLTNKIVDVESKQTQERDKQVKILVPNSTAG 186
Query: 132 CIIGKGGTKIKELRD 146
IIGKGG IK++++
Sbjct: 187 MIIGKGGAFIKQIKE 201
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG----PERILTIFAELENG 75
D ++++L+P+ AG +IGKGG+ I +++ + + V + P ER +TI + EN
Sbjct: 173 DKQVKILVPNSTAGMIIGKGGAFIKQIKEESGSYVQISQKPKDVSLQERCITIIGDKENN 232
Query: 76 LKVIEEVLPALDE 88
+ +L + E
Sbjct: 233 KNACKMILSKIVE 245
>gi|390177068|ref|XP_003736271.1| GA30025, isoform E [Drosophila pseudoobscura pseudoobscura]
gi|388858895|gb|EIM52344.1| GA30025, isoform E [Drosophila pseudoobscura pseudoobscura]
Length = 548
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 15/138 (10%)
Query: 14 FRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTI 68
F G +++L+P+ +G++IGKGG IA L+ D A V + PG ER+ I
Sbjct: 37 FSSGETTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLI 96
Query: 69 FAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQS 128
E + V++ + +D+IR+K D + D ++++V S
Sbjct: 97 TGSTEAIMVVLDFI---MDKIREK-------PDLTTKIIDAESKQTQERDKQVKILVPNS 146
Query: 129 QAGCIIGKGGTKIKELRD 146
AG IIGKGG IK++++
Sbjct: 147 TAGMIIGKGGAFIKQIKE 164
Score = 40.4 bits (93), Expect = 0.24, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG----PERILTIFAELENG 75
D ++++L+P+ AG +IGKGG+ I +++ D + V + P ER +TI + EN
Sbjct: 136 DKQVKILVPNSTAGMIIGKGGAFIKQIKEDSGSYVQISQKPKDVSLQERCITIIGDKENN 195
Query: 76 LKVIEEVLPALDEIRQ 91
+ +L + E Q
Sbjct: 196 KNACKMILSKIVEDPQ 211
>gi|195037250|ref|XP_001990077.1| GH18435 [Drosophila grimshawi]
gi|193894273|gb|EDV93139.1| GH18435 [Drosophila grimshawi]
Length = 569
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 15/135 (11%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PGP-ERILTIFAE 71
G +++L+P+ +G++IGKGG IA L+ D A V + PG ER+ I
Sbjct: 62 GDTTFHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGS 121
Query: 72 LENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAG 131
+E + V++ ++ D+IR+K D + D ++++V S AG
Sbjct: 122 VEGIMTVVDFIM---DKIREK-------PDLTTKIIDAESKQAQERDKQVKILVPNSTAG 171
Query: 132 CIIGKGGTKIKELRD 146
IIGKGG IK++++
Sbjct: 172 MIIGKGGAFIKQIKE 186
Score = 38.5 bits (88), Expect = 0.86, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG----PERILTIFAELENG 75
D ++++L+P+ AG +IGKGG+ I +++ + + V + P ER +TI + EN
Sbjct: 158 DKQVKILVPNSTAGMIIGKGGAFIKQIKEESGSYVQISQKPKDVSLQERCITIIGDKENN 217
Query: 76 LKVIEEVLPALDEIRQ 91
+ +L + E Q
Sbjct: 218 KNACKMILSKIVEDPQ 233
>gi|344231257|gb|EGV63139.1| hypothetical protein CANTEDRAFT_93908 [Candida tenuis ATCC 10573]
Length = 562
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 42/139 (30%), Positives = 61/139 (43%), Gaps = 21/139 (15%)
Query: 11 FKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--PERILTI 68
++R + P V R+ P + AG ++GK G I +R+ V V D PERI+T+
Sbjct: 131 YQREKEDPTVVSFRMYCPVKEAGLIVGKKGEQINHIRDRANVKVFVSDNIKGVPERIVTV 190
Query: 69 FAELENGLKVIEEVLPA-LDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQ 127
EN K + A LDE ED N YD+RL++
Sbjct: 191 RGSAENVAKAFGLAVRAILDE----------PEDEASSIN--------SSSYDLRLLIPH 232
Query: 128 SQAGCIIGKGGTKIKELRD 146
G IIGK G+K +E+ +
Sbjct: 233 PLVGYIIGKQGSKFREIEE 251
>gi|312079928|ref|XP_003142383.1| hypothetical protein LOAG_06799 [Loa loa]
Length = 440
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 77/149 (51%), Gaps = 28/149 (18%)
Query: 15 RGGP------------NDVELRLLIPSRVAGSVIGKGGSNIARLRND----FKASVTVPD 58
RGGP N V++++LIPS G++IGKGG + L+++ + S
Sbjct: 16 RGGPATKKAHVSDTEDNIVQVKVLIPSAAVGALIGKGGETMRNLKSESGCRLQMSKNQEV 75
Query: 59 CPGP-ERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKD 117
PG ERI + ++ + LKV + + L++IR+K D ++ G+ +
Sbjct: 76 YPGTNERICLVKGKIASVLKVSDVI---LEKIREKVDNN----TPSDIFDHKGM----ER 124
Query: 118 DYDIRLIVHQSQAGCIIGKGGTKIKELRD 146
+++L+V + AG +IGK G +IKE+R+
Sbjct: 125 KNEMKLVVPNTSAGMVIGKSGARIKEIRE 153
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 12/73 (16%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP-------ERILTIFAELEN 74
E++L++P+ AG VIGK G+ I +R A++ V G ERI+TI AE +
Sbjct: 127 EMKLVVPNTSAGMVIGKSGARIKEIREQTGANIQVYPKAGSQEAKVSQERIITIAAEQDE 186
Query: 75 GL-----KVIEEV 82
L +V+E+V
Sbjct: 187 VLMDALQRVLEKV 199
>gi|413933964|gb|AFW68515.1| hypothetical protein ZEAMMB73_983755 [Zea mays]
Length = 768
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 21/144 (14%)
Query: 18 PNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PGP-ERILTIF------ 69
P + R+L P++ GSV+G+GG + LR + KA + V D PG ER++ IF
Sbjct: 40 PIETIYRILCPAKKIGSVLGRGGDIVKALREETKAKIRVADSIPGADERVIIIFNYQNQP 99
Query: 70 --------AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDI 121
++ +GL ++ A D + + + K E + + DD
Sbjct: 100 ELTDEAAEKQISDGLGNMKPHCFAQDALLKIHDKIVADEIYDEVAHDE-----SSDDVTA 154
Query: 122 RLIVHQSQAGCIIGKGGTKIKELR 145
R++V +Q GC++GKGG+ I++LR
Sbjct: 155 RILVQGNQVGCLLGKGGSIIQQLR 178
Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 30/143 (20%)
Query: 14 FRGGPN-------DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV----PDCPGP 62
+R GP + +R+L S + GSVIGK G+N+ R+ A + V D G
Sbjct: 276 YRSGPQYPVSETEEFSIRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASGE 335
Query: 63 ERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIR 122
I+ E+ E + P ++ + + K + K R
Sbjct: 336 RLIIVSSNEIPT-----EPISPTIEALILLHDKVSASSE--------------KHHSSTR 376
Query: 123 LIVHQSQAGCIIGKGGTKIKELR 145
L+V ++ GCI+G+GG I E+R
Sbjct: 377 LVVPSNKVGCILGEGGQVITEMR 399
>gi|24645370|ref|NP_731356.1| pasilla, isoform C [Drosophila melanogaster]
gi|11526808|gb|AAG36790.1|AF220423_1 PASILLA splice variant 4 [Drosophila melanogaster]
gi|23170800|gb|AAF54378.2| pasilla, isoform C [Drosophila melanogaster]
Length = 561
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 15/129 (11%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTIFAELENGLK 77
+++L+P+ +G++IGKGG IA L+ D A V + PG ER+ I E +
Sbjct: 57 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEAIMV 116
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKG 137
V+E + +D+IR+K D + + D ++++V S AG IIGKG
Sbjct: 117 VMEFI---MDKIREK-------PDLTNKIVDTDSKQTQERDKQVKILVPNSTAGMIIGKG 166
Query: 138 GTKIKELRD 146
G IK++++
Sbjct: 167 GAFIKQIKE 175
Score = 39.3 bits (90), Expect = 0.58, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG----PERILTIFAELENG 75
D ++++L+P+ AG +IGKGG+ I +++ + + V + P ER +TI + EN
Sbjct: 147 DKQVKILVPNSTAGMIIGKGGAFIKQIKEESGSYVQISQKPTDVSLQERCITIIGDKENN 206
Query: 76 LKVIEEVLPALDEIRQ 91
+ +L + E Q
Sbjct: 207 KNACKMILSKIVEDPQ 222
>gi|256092556|ref|XP_002581984.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
Length = 71
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
S F+R +V +R LIP R AG +IGKGG NI ++R+ + + +PD GPER
Sbjct: 16 SKFQRSSVDLTNVSIRFLIPGRAAGIMIGKGGENIKKIRSQYNVKLNIPDSRGPER 71
>gi|224112243|ref|XP_002316129.1| predicted protein [Populus trichocarpa]
gi|222865169|gb|EEF02300.1| predicted protein [Populus trichocarpa]
Length = 553
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 15/137 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PG-PERILTIFAELENGL- 76
D R L P R GS+IGKGG +LR D K+++ + + PG ERI+TI++ E
Sbjct: 41 DTVYRYLCPLRKIGSIIGKGGEIAKQLRADSKSNIRISEAMPGYDERIVTIYSSSEETNL 100
Query: 77 --KVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDY------DIRLIVHQS 128
+ E V PA D + + + D N G+D++ +R++V
Sbjct: 101 FGETGEYVCPAQDALFMVHDR----VIAEDLNNAAAEEEEGEDNFGEVQQVTVRMLVPAD 156
Query: 129 QAGCIIGKGGTKIKELR 145
Q GC+IGKGG I+ +R
Sbjct: 157 QIGCVIGKGGQVIQNIR 173
>gi|427792951|gb|JAA61927.1| Putative rna-binding protein nova1/pasilla, partial [Rhipicephalus
pulchellus]
Length = 448
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 14/145 (9%)
Query: 7 QLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG- 61
Q+ +R G ++L+P+ AG++IGKGG IA L+ + A V + PG
Sbjct: 24 QMEQLRRRASGNGTFHFKILVPAVAAGAIIGKGGETIALLQKEAGARVKMSKSNDFYPGT 83
Query: 62 PERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDI 121
ER+ I +E L++ E ++ + E K D + + +
Sbjct: 84 TERVCLITGSVEGVLRIHEFIMEKIKEKPDPTAKIAIDFDHKQP---------AEREKQV 134
Query: 122 RLIVHQSQAGCIIGKGGTKIKELRD 146
+++V S AG IIGKGG+ IK++++
Sbjct: 135 KILVPNSTAGMIIGKGGSYIKQIKE 159
Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVP----DCPGPERI 65
+F + + ++++L+P+ AG +IGKGGS I +++ + A V + D ER
Sbjct: 121 DFDHKQPAEREKQVKILVPNSTAGMIIGKGGSYIKQIKEESGAYVQISQKSKDHALAERC 180
Query: 66 LTIFAELENGLKVIEEVLPALDE 88
+T+ E++N K + +L + E
Sbjct: 181 ITVIGEMDNNKKACQLILAKIVE 203
>gi|195388678|ref|XP_002053006.1| GJ23641 [Drosophila virilis]
gi|194151092|gb|EDW66526.1| GJ23641 [Drosophila virilis]
Length = 574
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 15/135 (11%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PGP-ERILTIFAE 71
G +++L+P+ +G++IGKGG IA L+ D A V + PG ER+ I
Sbjct: 62 GDTTFHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGS 121
Query: 72 LENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAG 131
+E + V++ ++ D+IR+K D + D ++++V S AG
Sbjct: 122 VEGIMTVVDFIM---DKIREK-------PDLTTKIIDAESKQAQERDKQVKILVPNSTAG 171
Query: 132 CIIGKGGTKIKELRD 146
IIGKGG IK++++
Sbjct: 172 MIIGKGGAFIKQIKE 186
Score = 38.5 bits (88), Expect = 0.94, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG----PERILTIFAELENG 75
D ++++L+P+ AG +IGKGG+ I +++ + + V + P ER +TI + EN
Sbjct: 158 DKQVKILVPNSTAGMIIGKGGAFIKQIKEESGSYVQISQKPKDVSLQERCITIIGDKENN 217
Query: 76 LKVIEEVLPALDEIRQ 91
+ +L + E Q
Sbjct: 218 KNACKMILSKIVEDPQ 233
>gi|297803502|ref|XP_002869635.1| hypothetical protein ARALYDRAFT_492216 [Arabidopsis lyrata subsp.
lyrata]
gi|297315471|gb|EFH45894.1| hypothetical protein ARALYDRAFT_492216 [Arabidopsis lyrata subsp.
lyrata]
Length = 495
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 69/136 (50%), Gaps = 12/136 (8%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIF 69
+R+ G P D R+++P G++IG+ G I ++ + +A + V D P P+RI+ I
Sbjct: 65 ERWPGWPGDCVFRMIVPVSKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTPDRIVLI- 123
Query: 70 AELENGLKVIEEVL-PALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQS 128
+G + E + PA+D + + + + G D D V G +RL+V +
Sbjct: 124 ----SGKEEPEAYMSPAMDAVLRVFRRVSGLPDNDD----DDVQNAGSAFCSVRLLVAST 175
Query: 129 QAGCIIGKGGTKIKEL 144
QA +IGK G+ IK +
Sbjct: 176 QAINLIGKQGSLIKSI 191
>gi|328716031|ref|XP_001944817.2| PREDICTED: poly(rC)-binding protein 3-like [Acyrthosiphon pisum]
Length = 415
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 13/112 (11%)
Query: 35 VIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEIRQKYG 94
+IG+ G + LRN +A++T+ D PERI+T+ + +I++ + +I ++
Sbjct: 34 LIGEYGEVVRDLRNQSEATITITDSSTPERIVTVTG----NINIIQKAFALITKILEQNS 89
Query: 95 KGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRD 146
N + I+LIV SQ G +IGKGG KI+E+R+
Sbjct: 90 PTHLQNSRKPSSN---------NSTTIKLIVPASQCGSLIGKGGVKIREIRE 132
>gi|427792957|gb|JAA61930.1| Putative pasilla, partial [Rhipicephalus pulchellus]
Length = 538
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 14/145 (9%)
Query: 7 QLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG- 61
Q+ +R G ++L+P+ AG++IGKGG IA L+ + A V + PG
Sbjct: 24 QMEQLRRRASGNGTFHFKILVPAVAAGAIIGKGGETIALLQKEAGARVKMSKSNDFYPGT 83
Query: 62 PERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDI 121
ER+ I +E L++ E ++ + E K D + + +
Sbjct: 84 TERVCLITGSVEGVLRIHEFIMEKIKEKPDPTAKIAIDFDHKQP---------AEREKQV 134
Query: 122 RLIVHQSQAGCIIGKGGTKIKELRD 146
+++V S AG IIGKGG+ IK++++
Sbjct: 135 KILVPNSTAGMIIGKGGSYIKQIKE 159
Score = 41.2 bits (95), Expect = 0.16, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVP----DCPGPERI 65
+F + + ++++L+P+ AG +IGKGGS I +++ + A V + D ER
Sbjct: 121 DFDHKQPAEREKQVKILVPNSTAGMIIGKGGSYIKQIKEESGAYVQISQKSKDHALAERC 180
Query: 66 LTIFAELENGLKVIEEVLPALDEIRQ 91
+T+ E++N K + +L + E Q
Sbjct: 181 ITVIGEMDNNKKACQLILAKIVEDPQ 206
>gi|85838458|gb|ABC86135.1| nova [Paracentrotus lividus]
Length = 553
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 49/147 (33%), Positives = 68/147 (46%), Gaps = 21/147 (14%)
Query: 10 NFKRFRGGPNDVE-----LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----P 60
N KR GP V+ L++LIPS AGS+IGKGG IA+L+ D +V + P
Sbjct: 58 NTKRTNLGPGPVDDNKYILKMLIPSTAAGSIIGKGGQTIAQLQRDTGTNVKLSKANDFYP 117
Query: 61 GP-ERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDY 119
G ER+ + +E+ V VL + E Q G G E
Sbjct: 118 GTQERVALLTGPVESLNNVAVFVLEKIKESPQ-LGVKAGAETITSPERA----------R 166
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
++++V S AG IIGKGG IK + +
Sbjct: 167 QVKIVVPNSTAGLIIGKGGAMIKSIME 193
>gi|442618212|ref|NP_001262414.1| pasilla, isoform Q [Drosophila melanogaster]
gi|440217246|gb|AGB95796.1| pasilla, isoform Q [Drosophila melanogaster]
Length = 517
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 15/129 (11%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTIFAELENGLK 77
+++L+P+ +G++IGKGG IA L+ D A V + PG ER+ I E +
Sbjct: 13 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEAIMV 72
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKG 137
V+E + +D+IR+K D + + D ++++V S AG IIGKG
Sbjct: 73 VMEFI---MDKIREK-------PDLTNKIVDTDSKQTQERDKQVKILVPNSTAGMIIGKG 122
Query: 138 GTKIKELRD 146
G IK++++
Sbjct: 123 GAFIKQIKE 131
Score = 38.9 bits (89), Expect = 0.69, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG----PERILTIFAELENG 75
D ++++L+P+ AG +IGKGG+ I +++ + + V + P ER +TI + EN
Sbjct: 103 DKQVKILVPNSTAGMIIGKGGAFIKQIKEESGSYVQISQKPTDVSLQERCITIIGDKENN 162
Query: 76 LKVIEEVLPALDEIRQ 91
+ +L + E Q
Sbjct: 163 KNACKMILSKIVEDPQ 178
>gi|406697218|gb|EKD00483.1| telomere length regulating RNA binding protein, Pbp2p [Trichosporon
asahii var. asahii CBS 8904]
Length = 793
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 19/132 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PG-PERILTIFAELENGLKV 78
+ +R LI ++ A +IG+ G+++ +R A VT+ + PG PERIL +F L+ K
Sbjct: 88 ISMRALIVTQDASVIIGRAGAHVNEIREKSGARVTISESIPGNPERILNVFGALDAVSKA 147
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
++ +++ + ++ V G I+ I+ S+ G +IG+GG
Sbjct: 148 FGLIVRRIND---------------EPFDVASVPG--SRAVTIKFIIPNSRMGSVIGRGG 190
Query: 139 TKIKELRDTFDA 150
+KIKE++D A
Sbjct: 191 SKIKEIQDASGA 202
Score = 42.0 bits (97), Expect = 0.077, Method: Composition-based stats.
Identities = 39/146 (26%), Positives = 61/146 (41%), Gaps = 17/146 (11%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC--PGP-ERILTIFA--- 70
G V ++ +IP+ GSVIG+GGS I +++ A + + PG ERIL++
Sbjct: 167 GSRAVTIKFIIPNSRMGSVIGRGGSKIKEIQDASGARLNASEVMLPGSTERILSVSGVAD 226
Query: 71 ELENGLKVIEEVLPALDE-----------IRQKYGKGRGGEDGGDGYNGGGVGGLGKDDY 119
+ + I +L E RQ+ + G G G
Sbjct: 227 AIHIAVYYIGTILLEYQERNPGPHSGIGTYRQQPQGMAAAQPSFTGVAPGAGGASAPGSQ 286
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELR 145
++ + S G IIGK G+KI E+R
Sbjct: 287 TQQIFIPNSLVGAIIGKAGSKINEIR 312
>gi|401880798|gb|EJT45110.1| telomere length regulating RNA binding protein, Pbp2p [Trichosporon
asahii var. asahii CBS 2479]
Length = 793
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 19/132 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PG-PERILTIFAELENGLKV 78
+ +R LI ++ A +IG+ G+++ +R A VT+ + PG PERIL +F L+ K
Sbjct: 88 ISMRALIVTQDASVIIGRAGAHVNEIREKSGARVTISESIPGNPERILNVFGALDAVSKA 147
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
++ +++ + ++ V G I+ I+ S+ G +IG+GG
Sbjct: 148 FGLIVRRIND---------------EPFDVASVPG--SRAVTIKFIIPNSRMGSVIGRGG 190
Query: 139 TKIKELRDTFDA 150
+KIKE++D A
Sbjct: 191 SKIKEIQDASGA 202
Score = 42.0 bits (97), Expect = 0.077, Method: Composition-based stats.
Identities = 39/146 (26%), Positives = 61/146 (41%), Gaps = 17/146 (11%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC--PGP-ERILTIFA--- 70
G V ++ +IP+ GSVIG+GGS I +++ A + + PG ERIL++
Sbjct: 167 GSRAVTIKFIIPNSRMGSVIGRGGSKIKEIQDASGARLNASEVMLPGSTERILSVSGVAD 226
Query: 71 ELENGLKVIEEVLPALDE-----------IRQKYGKGRGGEDGGDGYNGGGVGGLGKDDY 119
+ + I +L E RQ+ + G G G
Sbjct: 227 AIHIAVYYIGTILLEYQERNPGPHSGIGTYRQQPQGMAAAQPSFTGVAPGAGGASAPGSQ 286
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELR 145
++ + S G IIGK G+KI E+R
Sbjct: 287 TQQIFIPNSLVGAIIGKAGSKINEIR 312
>gi|255943089|ref|XP_002562313.1| Pc18g04820 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587046|emb|CAP94706.1| Pc18g04820 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 366
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 69/132 (52%), Gaps = 22/132 (16%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPG-PERILTIFAELENGL 76
D+ LR ++ S+ AG +IGK G N+A LR++ KA V+ PG +R+LT+ +L +
Sbjct: 46 DLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVS-KVVPGVHDRVLTVTGQLRSLA 104
Query: 77 KVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCII 134
+ V L E G G+GG+ ++ + +RL++ +Q G II
Sbjct: 105 RAYAIVAKGLLE----------------GAPQMGMGGIVSNNGTHPVRLLISHNQMGTII 148
Query: 135 GKGGTKIKELRD 146
G+ G KIK ++D
Sbjct: 149 GRQGLKIKHIQD 160
>gi|344250764|gb|EGW06868.1| Poly(rC)-binding protein 2 [Cricetulus griseus]
Length = 306
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 14/118 (11%)
Query: 33 GSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEIRQK 92
GS+I K G ++ ++R + A ++ D PERI+T+ K ++ L+E
Sbjct: 7 GSIIAKKGESVKKMREESGARTSISDGNCPERIITLAGPTNAIFKAFAMIIDKLEE---- 62
Query: 93 YGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
G + + +RL+V SQ G +IGKGG KIKE+R++ A
Sbjct: 63 ----------GISSSMTNSTAASRPPVALRLVVPASQCGSLIGKGGCKIKEIRESTGA 110
>gi|74007267|ref|XP_548937.2| PREDICTED: poly(rC)-binding protein 1-like [Canis lupus familiaris]
Length = 362
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G + R R + A + + + PERI+T+ K
Sbjct: 14 LTIRLLMHRKEVGSIIGKKGESPKRFRKESGARINISEGNCPERIITLTGPTNAIFKAFV 73
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
++ L+E D + +RL+V Q G +IGKGG K
Sbjct: 74 MIIDKLEE------------DINSSMTNSTAAS--RPPVTLRLVVPAYQCGSLIGKGGCK 119
Query: 141 IKELRDTFDA 150
IKE+R++ A
Sbjct: 120 IKEIRESTGA 129
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 98 VTLRLVVPAYQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGVPQSV 155
Query: 76 LKVIEEVLPALDEIRQKYGKGR 97
+ ++++ + E + +GR
Sbjct: 156 TECVKQICLVMLETLSQSPQGR 177
>gi|357479529|ref|XP_003610050.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355511105|gb|AES92247.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 431
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 14/139 (10%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIF 69
KR+ G P RL++P G +IG+ G I + + A + V D P P+RI+ I
Sbjct: 35 KRWPGWPGHCVFRLIVPVVKVGIIIGRKGELIKKTCEETHARIRVLDAPVGTPDRIVLI- 93
Query: 70 AELENGLKVIEEVL-PALDEIRQKYGKGRG-GEDGGDGYNGGGVGGLGKDDYDIRLIVHQ 127
+G + +E L PA+D I + + + G E + GV IRL+V
Sbjct: 94 ----SGKEDLEAPLSPAMDAILRIFKRVSGLSETDNNNTAAAGVALCS-----IRLLVAS 144
Query: 128 SQAGCIIGKGGTKIKELRD 146
+QA +IGK G+ IK +++
Sbjct: 145 TQAINLIGKQGSSIKAIQE 163
>gi|449531912|ref|XP_004172929.1| PREDICTED: poly(rC)-binding protein 3-like [Cucumis sativus]
Length = 453
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 70/139 (50%), Gaps = 15/139 (10%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIF 69
K++ G P + R+L+P++ GS+IG+ G I ++ + +A + + D P ER + +
Sbjct: 76 KKWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTAERAVMVS 135
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGY--NGGGVGGLGKDDYDIRLIVHQ 127
A+ E PA+D + + + + G +G + + N G RL+V
Sbjct: 136 AKDEPD----SAFPPAVDGLLRVHKRIVDGLEGDNAHAPNAG-------SKVSTRLLVAA 184
Query: 128 SQAGCIIGKGGTKIKELRD 146
SQAG +IGK G +K +++
Sbjct: 185 SQAGSLIGKQGGTVKSIQE 203
>gi|7671496|emb|CAB89337.1| putative protein [Arabidopsis thaliana]
Length = 568
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 23/138 (16%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASV----TVPDCPGPERILTIFAELE- 73
+D R L P + GSVIG+GG + +LRND ++ + +P C ER++TI++ +
Sbjct: 48 DDTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGC--DERVITIYSPSDE 105
Query: 74 -----NGLKVIEEVLPALDEIRQK-YGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQ 127
+G KV+ AL I + ED + G+ +L+V
Sbjct: 106 TNAFGDGEKVLSPAQDALFRIHDRVVADDARSEDSPE----------GEKQVTAKLLVPS 155
Query: 128 SQAGCIIGKGGTKIKELR 145
Q GCI+G+GG ++ +R
Sbjct: 156 DQIGCILGRGGQIVQNIR 173
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 20/140 (14%)
Query: 11 FKRFRGGPNDVE--LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CPGPERIL 66
++ R P E +RL+ P SVIGKGG+ I +LR + +A++ V G + ++
Sbjct: 272 YQPPRNDPPATEFFIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLI 331
Query: 67 TIFAELENGLKVIEEVL-PALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIV 125
TI A +V E+ P ++ + + K + G + RL+V
Sbjct: 332 TISAR-----EVFEDAYSPTIEAVMRLQPKCSDKVERDSGLVS----------FTTRLLV 376
Query: 126 HQSQAGCIIGKGGTKIKELR 145
S+ GCI+GKGG I E+R
Sbjct: 377 PSSRIGCILGKGGAIITEMR 396
>gi|15236094|ref|NP_194330.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|4538929|emb|CAB39665.1| putative nucleic acid binding protein [Arabidopsis thaliana]
gi|7269451|emb|CAB79455.1| putative nucleic acid binding protein [Arabidopsis thaliana]
gi|15810499|gb|AAL07137.1| putative nucleic acid binding protein [Arabidopsis thaliana]
gi|20466386|gb|AAM20510.1| putative nucleic acid binding protein [Arabidopsis thaliana]
gi|21280915|gb|AAM45112.1| putative nucleic acid binding protein [Arabidopsis thaliana]
gi|332659742|gb|AEE85142.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 495
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 16/138 (11%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIF 69
+R+ G P D R+++P G++IG+ G I ++ + +A + V D P P+RI+ I
Sbjct: 65 ERWPGWPGDCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTPDRIVLI- 123
Query: 70 AELENGLKVIEEVL-PALDEIRQKYGKGRG--GEDGGDGYNGGGVGGLGKDDYDIRLIVH 126
+G + E + PA+D + + + + G D D N G V +RL+V
Sbjct: 124 ----SGKEEPEAYMSPAMDAVLRVFRRVSGLPDNDDDDVQNAGSVFS------SVRLLVA 173
Query: 127 QSQAGCIIGKGGTKIKEL 144
+QA +IGK G+ IK +
Sbjct: 174 STQAINLIGKQGSLIKSI 191
>gi|395837892|ref|XP_003791862.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein K-like [Otolemur garnettii]
Length = 340
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 62/132 (46%), Gaps = 13/132 (9%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLK--- 77
VEL + + S+ A +VIGKGG N L D AS + PD P+ I+ I AE+ L+
Sbjct: 47 VELXICLQSKNATTVIGKGGKN--PLHTDSSASASGPDSSAPQCIMRIRAEIXEILRKTI 104
Query: 78 VIEEV---LPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCII 134
I EV LP+ Q + E D + G + DY RL +HQ+ G I
Sbjct: 105 AITEVSLQLPSPTAFSQIXPEFDAMECLSDQHCKG-----QEFDYKFRLXIHQTLEGGSI 159
Query: 135 GKGGTKIKELRD 146
IKEL++
Sbjct: 160 SVKNPNIKELQE 171
>gi|30685269|ref|NP_851040.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|30685276|ref|NP_197031.3| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|110737265|dbj|BAF00580.1| hypothetical protein [Arabidopsis thaliana]
gi|110738501|dbj|BAF01176.1| hypothetical protein [Arabidopsis thaliana]
gi|332004758|gb|AED92141.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|332004759|gb|AED92142.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 548
Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 23/138 (16%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASV----TVPDCPGPERILTIFAELE- 73
+D R L P + GSVIG+GG + +LRND ++ + +P C ER++TI++ +
Sbjct: 48 DDTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGC--DERVITIYSPSDE 105
Query: 74 -----NGLKVIEEVLPALDEIRQK-YGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQ 127
+G KV+ AL I + ED + G+ +L+V
Sbjct: 106 TNAFGDGEKVLSPAQDALFRIHDRVVADDARSEDSPE----------GEKQVTAKLLVPS 155
Query: 128 SQAGCIIGKGGTKIKELR 145
Q GCI+G+GG ++ +R
Sbjct: 156 DQIGCILGRGGQIVQNIR 173
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 20/140 (14%)
Query: 11 FKRFRGGPNDVE--LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CPGPERIL 66
++ R P E +RL+ P SVIGKGG+ I +LR + +A++ V G + ++
Sbjct: 272 YQPPRNDPPATEFFIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLI 331
Query: 67 TIFAELENGLKVIEEVL-PALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIV 125
TI A +V E+ P ++ + + K + G + RL+V
Sbjct: 332 TISAR-----EVFEDAYSPTIEAVMRLQPKCSDKVERDSGLVS----------FTTRLLV 376
Query: 126 HQSQAGCIIGKGGTKIKELR 145
S+ GCI+GKGG I E+R
Sbjct: 377 PSSRIGCILGKGGAIITEMR 396
>gi|414870928|tpg|DAA49485.1| TPA: hypothetical protein ZEAMMB73_398324 [Zea mays]
Length = 770
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 47/149 (31%), Positives = 71/149 (47%), Gaps = 18/149 (12%)
Query: 18 PNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PGP-ERILTIF------ 69
P + R+L P + GSV+G+GG + LR + KA + V D PG ER++ IF
Sbjct: 40 PIETIYRILCPVKKIGSVLGRGGDIVKALREETKAKIRVADSIPGADERVIIIFNYQNEP 99
Query: 70 ------AELEN--GLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDI 121
AE +N GL + A D + + + K E + N DD
Sbjct: 100 EPTDEAAEEKNSDGLGNFKSHCFAQDALLKIHDKIVSDEIHDEVANDE--KSESADDVTA 157
Query: 122 RLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
R++V +Q GC++GKGG+ I++LR A
Sbjct: 158 RILVQGNQVGCLLGKGGSIIQQLRSNTGA 186
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 30/143 (20%)
Query: 14 FRGGPN-------DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV----PDCPGP 62
+R GP + +R+L S + GSVIGK G+N+ R+ A + V D G
Sbjct: 279 YRSGPQYPVTETEEFSIRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASGE 338
Query: 63 ERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIR 122
I+ E+ E + PA++ + + K + K R
Sbjct: 339 RLIIISSNEIP-----AEPISPAIEALILLHDKVSAPSE--------------KHHSSTR 379
Query: 123 LIVHQSQAGCIIGKGGTKIKELR 145
L+V S+ GCIIG+GG I ++R
Sbjct: 380 LVVPSSKVGCIIGEGGKVITDMR 402
>gi|326378263|gb|ADZ57231.1| neuro-oncological ventral antigen [Branchiostoma floridae]
Length = 511
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 16/133 (12%)
Query: 16 GGPNDVEL--RLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PGPERILTIF 69
GGP D +L ++LIPS AGS+IGKGG I +L+ + A++ + PG + +
Sbjct: 59 GGPEDGQLLLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSNDFYPGTTERIVVI 118
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
E+ LK + + L +++I Q + N ++++V S
Sbjct: 119 TGSEDSLKSVHKFL--MEKISQAPQPPAKSPSEQNANNNRA--------KQVKIVVPNST 168
Query: 130 AGCIIGKGGTKIK 142
AG IIGKGG IK
Sbjct: 169 AGLIIGKGGATIK 181
>gi|195655947|gb|ACG47441.1| nucleic acid binding protein [Zea mays]
gi|414870927|tpg|DAA49484.1| TPA: nucleic acid binding protein [Zea mays]
Length = 769
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 47/149 (31%), Positives = 71/149 (47%), Gaps = 18/149 (12%)
Query: 18 PNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PGP-ERILTIF------ 69
P + R+L P + GSV+G+GG + LR + KA + V D PG ER++ IF
Sbjct: 40 PIETIYRILCPVKKIGSVLGRGGDIVKALREETKAKIRVADSIPGADERVIIIFNYQNEP 99
Query: 70 ------AELEN--GLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDI 121
AE +N GL + A D + + + K E + N DD
Sbjct: 100 EPTDEAAEEKNSDGLGNFKSHCFAQDALLKIHDKIVSDEIHDEVANDE--KSESADDVTA 157
Query: 122 RLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
R++V +Q GC++GKGG+ I++LR A
Sbjct: 158 RILVQGNQVGCLLGKGGSIIQQLRSNTGA 186
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 30/143 (20%)
Query: 14 FRGGPN-------DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV----PDCPGP 62
+R GP + +R+L S + GSVIGK G+N+ R+ A + V D G
Sbjct: 279 YRSGPQYPVTETEEFSIRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASGE 338
Query: 63 ERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIR 122
I+ E+ E + PA++ + + K + K R
Sbjct: 339 RLIIISSNEIP-----AEPISPAIEALILLHDKVSAPSE--------------KHHSSTR 379
Query: 123 LIVHQSQAGCIIGKGGTKIKELR 145
L+V S+ GCIIG+GG I ++R
Sbjct: 380 LVVPSSKVGCIIGEGGKVITDMR 402
>gi|320588068|gb|EFX00543.1| kh domain protein RNA-binding protein [Grosmannia clavigera kw1407]
Length = 375
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 66/130 (50%), Gaps = 20/130 (15%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGLKV 78
+ LR ++ S+ AG +IGKGG N+A LR++ KA V+ +R+LTI + K
Sbjct: 47 LTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVHDRVLTITGGCDAISKA 106
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGL--GKDDYDIRLIVHQSQAGCIIGK 136
V AL E G G+GG+ G + I+L++ +Q G +IG+
Sbjct: 107 YAVVARALLE----------------GVPTMGMGGILQGNGTHPIKLLISHNQMGTVIGR 150
Query: 137 GGTKIKELRD 146
GG KIK ++D
Sbjct: 151 GGLKIKHIQD 160
>gi|125532489|gb|EAY79054.1| hypothetical protein OsI_34164 [Oryza sativa Indica Group]
gi|125575260|gb|EAZ16544.1| hypothetical protein OsJ_32017 [Oryza sativa Japonica Group]
Length = 769
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 74/142 (52%), Gaps = 15/142 (10%)
Query: 18 PNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PGP-ERILTIF---AEL 72
P + R+L P + GSV+G+GG + LR+ KA + V D PG ER++ IF ++
Sbjct: 50 PIETIYRILCPVKKIGSVLGRGGDIVKALRDTTKAKIRVADSIPGADERVIIIFNYSSQT 109
Query: 73 ENGLKVI-----EEVLP---ALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLI 124
E + I E++ P A D + + + K ED G + DD R++
Sbjct: 110 EEAAQNISTDGFEDMKPHCFAQDALLKIHDKIAADEDLHAGIVHEKSENV--DDVIARIL 167
Query: 125 VHQSQAGCIIGKGGTKIKELRD 146
V +Q GC++GKGG+ I++LR+
Sbjct: 168 VPGNQVGCLLGKGGSIIQQLRN 189
Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 25/131 (19%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC---PGPERILTIFA-ELENG 75
+ +++L S G VIGK G N+ ++ A V V + ER++ + + E+ +
Sbjct: 301 EFSIKILCASEHIGQVIGKSGGNVRQVEQQTGACVQVKEVGKNASEERLIVVSSQEIPD- 359
Query: 76 LKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDY-DIRLIVHQSQAGCII 134
+ V P ++ + + K V L ++ + RL+V ++ GCII
Sbjct: 360 ----DPVSPTIEALILLHSK---------------VSTLAENHHLTTRLVVPSNKVGCII 400
Query: 135 GKGGTKIKELR 145
G+GG I E+R
Sbjct: 401 GEGGKVITEMR 411
>gi|402594254|gb|EJW88180.1| hypothetical protein WUBG_00913 [Wuchereria bancrofti]
Length = 407
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 72/131 (54%), Gaps = 16/131 (12%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRND----FKASVTVPDCPGP-ERILTIFAELENG 75
V++++LIPS G++IGKGG + L+++ + S PG ERI + ++ +
Sbjct: 2 VQVKVLIPSAAVGALIGKGGETMRNLKSESGCRLQMSKNQEVYPGTNERICLVKGKIASV 61
Query: 76 LKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIG 135
LKV + +L ++IR+K D ++ G+ + +++L+V + AG +IG
Sbjct: 62 LKVSDVIL---EKIREKVDNN----TPSDIFDHKGM----ERKNEMKLVVPNTSAGMVIG 110
Query: 136 KGGTKIKELRD 146
K G +IKE+R+
Sbjct: 111 KSGARIKEIRE 121
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 12/73 (16%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP-------ERILTIFAELEN 74
E++L++P+ AG VIGK G+ I +R A++ V G ERI+TI AE +
Sbjct: 95 EMKLVVPNTSAGMVIGKSGARIKEIREQTGANIQVYPKAGSQEAKVSQERIITIAAEQDE 154
Query: 75 GL-----KVIEEV 82
L +V+E+V
Sbjct: 155 VLMDALQRVLEKV 167
>gi|115482708|ref|NP_001064947.1| Os10g0495000 [Oryza sativa Japonica Group]
gi|22128716|gb|AAM92828.1| putative RNA-binding protein [Oryza sativa Japonica Group]
gi|110289325|gb|ABB47821.2| KH domain containing protein, expressed [Oryza sativa Japonica
Group]
gi|113639556|dbj|BAF26861.1| Os10g0495000 [Oryza sativa Japonica Group]
gi|215694845|dbj|BAG90036.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 762
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 74/142 (52%), Gaps = 15/142 (10%)
Query: 18 PNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PGP-ERILTIF---AEL 72
P + R+L P + GSV+G+GG + LR+ KA + V D PG ER++ IF ++
Sbjct: 43 PIETIYRILCPVKKIGSVLGRGGDIVKALRDTTKAKIRVADSIPGADERVIIIFNYSSQT 102
Query: 73 ENGLKVI-----EEVLP---ALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLI 124
E + I E++ P A D + + + K ED G + DD R++
Sbjct: 103 EEAAQNISTDGFEDMKPHCFAQDALLKIHDKIAADEDLHAGIVHEKSENV--DDVIARIL 160
Query: 125 VHQSQAGCIIGKGGTKIKELRD 146
V +Q GC++GKGG+ I++LR+
Sbjct: 161 VPGNQVGCLLGKGGSIIQQLRN 182
Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 21/129 (16%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC--PGPERILTIFAELENGLK 77
+ +++L S G VIGK G N+ ++ A V V + E L + + E
Sbjct: 294 EFSIKILCASEHIGQVIGKSGGNVRQVEQQTGACVQVKEVGKNASEERLIVVSSQEIPDD 353
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDY-DIRLIVHQSQAGCIIGK 136
+ + AL + K V L ++ + RL+V ++ GCIIG+
Sbjct: 354 PVSPTIEALILLHSK------------------VSTLAENHHLTTRLVVPSNKVGCIIGE 395
Query: 137 GGTKIKELR 145
GG I E+R
Sbjct: 396 GGKVITEMR 404
Score = 35.0 bits (79), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV------PDC 59
+DV R+L+P G ++GKGGS I +LRND A + V P C
Sbjct: 153 DDVIARILVPGNQVGCLLGKGGSIIQQLRNDTGAGIRVLPSENLPQC 199
>gi|341891904|gb|EGT47839.1| CBN-PES-4 protein [Caenorhabditis brenneri]
Length = 438
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 67/130 (51%), Gaps = 17/130 (13%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G I ++R + A + + D PERI+TI L VI
Sbjct: 76 LTIRLLMQGKEVGSIIGKKGDQIKKIREESGAKINISDGSCPERIVTITGT----LGVIG 131
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
+ A + + K+ ED N + K +R+IV +Q G +IGKGG+K
Sbjct: 132 K---AFNMVCNKF-----EEDMLLLPN-----SVPKPPITMRVIVPATQCGSLIGKGGSK 178
Query: 141 IKELRDTFDA 150
IK++R+ A
Sbjct: 179 IKDIREATGA 188
>gi|392894107|ref|NP_497351.3| Protein PES-4 [Caenorhabditis elegans]
gi|373220643|emb|CCD73932.1| Protein PES-4 [Caenorhabditis elegans]
Length = 432
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 67/130 (51%), Gaps = 17/130 (13%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G I ++R + A + + D PERI+TI L VI
Sbjct: 72 LTIRLLMQGKEVGSIIGKKGDQIKKIREESGAKINISDGSCPERIVTITGT----LGVIG 127
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
+ A + + K+ ED N + K +R+IV +Q G +IGKGG+K
Sbjct: 128 K---AFNMVCNKF-----EEDMLLLPN-----SVPKPPITMRVIVPATQCGSLIGKGGSK 174
Query: 141 IKELRDTFDA 150
IK++R+ A
Sbjct: 175 IKDIREATGA 184
>gi|405122865|gb|AFR97631.1| cytoplasmic protein [Cryptococcus neoformans var. grubii H99]
Length = 357
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 69/136 (50%), Gaps = 19/136 (13%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PG-PERILTIFAELEN 74
GP + +R LI ++ A +IG+GG+++ +R A VTV + PG PERIL + L+
Sbjct: 76 GPQQISMRSLIVTQDASIIIGRGGAHVNEIREKSSARVTVSESIPGNPERILNVSGPLDA 135
Query: 75 GLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCII 134
K ++ +++ + ++ V G I+ I+ S+ G +I
Sbjct: 136 VAKAFGLIVRRIND---------------EPFDVPSVP--GSRAVTIKFIIPNSRMGSVI 178
Query: 135 GKGGTKIKELRDTFDA 150
GKGG+KIKE+++ A
Sbjct: 179 GKGGSKIKEIQEASGA 194
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 10/134 (7%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFAELENGLK 77
V ++ +IP+ GSVIGKGGS I ++ A + + P ER+L++ +
Sbjct: 163 VTIKFIIPNSRMGSVIGKGGSKIKEIQEASGARLNASEAMLPGSTERVLSVSGVADAVHI 222
Query: 78 VIEEVLPALDEIRQKY-----GKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
+ + L E + +Y G + + G N G I + + G
Sbjct: 223 AVYYIGTILLEYQDRYPANATGSYKQSQSRGPPANSNAPPPPGMQTQQI--FIPNALVGA 280
Query: 133 IIGKGGTKIKELRD 146
IIG+GG+KI E+R
Sbjct: 281 IIGRGGSKINEIRS 294
>gi|58259741|ref|XP_567283.1| cytoplasm protein [Cryptococcus neoformans var. neoformans JEC21]
gi|134116752|ref|XP_773048.1| hypothetical protein CNBJ3240 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255668|gb|EAL18401.1| hypothetical protein CNBJ3240 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229333|gb|AAW45766.1| cytoplasm protein, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 357
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 69/136 (50%), Gaps = 19/136 (13%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PG-PERILTIFAELEN 74
GP + +R LI ++ A +IG+GG+++ +R A VTV + PG PERIL + L+
Sbjct: 76 GPQQISMRSLIVTQDASIIIGRGGAHVNEIREKSSARVTVSESIPGNPERILNVSGPLDA 135
Query: 75 GLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCII 134
K ++ +++ + ++ V G I+ I+ S+ G +I
Sbjct: 136 VAKAFGLIVRRIND---------------EPFDVPSVP--GSRAVTIKFIIPNSRMGSVI 178
Query: 135 GKGGTKIKELRDTFDA 150
GKGG+KIKE+++ A
Sbjct: 179 GKGGSKIKEIQEASGA 194
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 6/132 (4%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFAELENGLK 77
V ++ +IP+ GSVIGKGGS I ++ A + + P ER+L++ +
Sbjct: 163 VTIKFIIPNSRMGSVIGKGGSKIKEIQEASGARLNASEAMLPGSTERVLSVSGVADAVHI 222
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIR---LIVHQSQAGCII 134
+ + L E + +Y G G ++ + + + G II
Sbjct: 223 AVYYIGTILLEYQDRYPSNATGSYKQSQSRGPPPNSNAPPPPGMQTQQIFIPNALVGAII 282
Query: 135 GKGGTKIKELRD 146
G+GG+KI E+R
Sbjct: 283 GRGGSKINEIRS 294
>gi|308460519|ref|XP_003092563.1| CRE-PES-4 protein [Caenorhabditis remanei]
gi|308253083|gb|EFO97035.1| CRE-PES-4 protein [Caenorhabditis remanei]
Length = 436
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 67/130 (51%), Gaps = 17/130 (13%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G I ++R + A + + D PERI+TI L VI
Sbjct: 73 LTIRLLMQGKEVGSIIGKKGDQIKKIREESGAKINISDGSCPERIVTITGT----LGVIG 128
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
+ A + + K+ ED N + K +R+IV +Q G +IGKGG+K
Sbjct: 129 K---AFNMVCNKF-----EEDMLLLPN-----SVPKPPITMRVIVPATQCGSLIGKGGSK 175
Query: 141 IKELRDTFDA 150
IK++R+ A
Sbjct: 176 IKDIREATGA 185
>gi|321258532|ref|XP_003193987.1| telomere length regulating RNA binding protein; Pbp2p [Cryptococcus
gattii WM276]
gi|317460457|gb|ADV22200.1| Telomere length regulating RNA binding protein, putative; Pbp2p
[Cryptococcus gattii WM276]
Length = 357
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 69/136 (50%), Gaps = 19/136 (13%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PG-PERILTIFAELEN 74
GP + +R LI ++ A +IG+GG+++ +R A VTV + PG PERIL + L+
Sbjct: 76 GPQQISMRSLIVTQDASIIIGRGGAHVNEIREKSSARVTVSESIPGNPERILNVSGPLDA 135
Query: 75 GLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCII 134
K ++ +++ + ++ V G I+ I+ S+ G +I
Sbjct: 136 VAKAFGLIVRRIND---------------EPFDVPSVP--GSRAVTIKFIIPNSRMGSVI 178
Query: 135 GKGGTKIKELRDTFDA 150
GKGG+KIKE+++ A
Sbjct: 179 GKGGSKIKEIQEASGA 194
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 10/134 (7%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFAELENGLK 77
V ++ +IP+ GSVIGKGGS I ++ A + + P ER+L++ +
Sbjct: 163 VTIKFIIPNSRMGSVIGKGGSKIKEIQEASGARLNASEAMLPGSTERVLSVSGVADAVHI 222
Query: 78 VIEEVLPALDEIRQKY-----GKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
+ + L E + +Y G R + G N G I + + G
Sbjct: 223 AVYYIGTILLEYQDRYPANATGSYRQSQSRGPPPNSNAPPPPGMQTQQI--FIPNALVGA 280
Query: 133 IIGKGGTKIKELRD 146
IIG+GG+KI E+R
Sbjct: 281 IIGRGGSKINEIRS 294
>gi|195330414|ref|XP_002031899.1| GM23807 [Drosophila sechellia]
gi|194120842|gb|EDW42885.1| GM23807 [Drosophila sechellia]
Length = 572
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 15/135 (11%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PGP-ERILTIFAE 71
G +++L+P+ +G++IGKGG IA L+ D A V + PG ER+ I
Sbjct: 62 GDTTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGS 121
Query: 72 LENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAG 131
E + V+E ++ D+IR+K D + + D ++++V S AG
Sbjct: 122 TEAIMVVMEFIM---DKIREK-------PDLTNKIVDVESKQTQERDRQVKILVPNSTAG 171
Query: 132 CIIGKGGTKIKELRD 146
IIGKGG IK++++
Sbjct: 172 MIIGKGGAFIKQIKE 186
Score = 38.5 bits (88), Expect = 0.83, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG----PERILTIFAELENG 75
D ++++L+P+ AG +IGKGG+ I +++ + + V + P ER +TI + EN
Sbjct: 158 DRQVKILVPNSTAGMIIGKGGAFIKQIKEESGSYVQISQKPKDVSLQERCITIIGDKENN 217
Query: 76 LKVIEEVLPALDEIRQ 91
+ +L + E Q
Sbjct: 218 KNACKMILSKIVEDPQ 233
>gi|13605589|gb|AAK32788.1|AF361620_1 AT5g46190/MCL19_25 [Arabidopsis thaliana]
Length = 640
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 10/134 (7%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFAELENGLK 77
V R+L PS V GSVIGK G I +R + +A + V D P P ER++TIF +
Sbjct: 44 VVYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVD-PFPGCSERVITIFCSVSEKKD 102
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGG-----LGKDDY-DIRLIVHQSQAG 131
+++ LD D + +DD+ + RL+V SQ
Sbjct: 103 IVDIEYSELDYSVPLCSAQAALLKVHDAIVASLATAAENTKIDRDDFRECRLLVPSSQCS 162
Query: 132 CIIGKGGTKIKELR 145
+IGK G+ IK +R
Sbjct: 163 IVIGKSGSIIKNIR 176
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV------PDCPGP-ERILTIFAE 71
+ V+++LL+ S+V G +IGK GS I+ +R KA + + P C P + ++ I E
Sbjct: 397 DKVKMQLLVSSKVIGCIIGKSGSIISEIRKRTKADIHISKGNNTPKCADPNDELVEISGE 456
Query: 72 LEN 74
+ N
Sbjct: 457 VSN 459
>gi|268570691|ref|XP_002640810.1| C. briggsae CBR-PES-4 protein [Caenorhabditis briggsae]
Length = 447
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 66/126 (52%), Gaps = 17/126 (13%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G I ++R + A + + D PERI+TI L VI
Sbjct: 74 LTIRLLMQGKEVGSIIGKKGDQIKKIREESGAKINISDGSCPERIVTI----TGTLGVIG 129
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
+ A + + K+ ED N + K +R+IV +Q G +IGKGG+K
Sbjct: 130 K---AFNMVCNKF-----EEDMLLLPN-----SVPKPPITMRVIVPATQCGSLIGKGGSK 176
Query: 141 IKELRD 146
IK++R+
Sbjct: 177 IKDIRE 182
>gi|403286483|ref|XP_003934516.1| PREDICTED: poly(rC)-binding protein 1-like isoform 1 [Saimiri
boliviensis boliviensis]
gi|403286485|ref|XP_003934517.1| PREDICTED: poly(rC)-binding protein 1-like isoform 2 [Saimiri
boliviensis boliviensis]
Length = 376
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 14/130 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK ++ R+R + A ++ + PERI+T+ K
Sbjct: 14 LTIRLLMHGKEVGSIIGKNEESVKRIREESGARFSISEGNCPERIITLTGPTCAIFKAFA 73
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
++ L+E D + +RL+V +Q G +IGKGG K
Sbjct: 74 MMINKLEE------------DINSSMTNSTAAS--RPPVTLRLVVPATQCGSLIGKGGCK 119
Query: 141 IKELRDTFDA 150
IKE+R++ A
Sbjct: 120 IKEIRESTGA 129
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ E+ +T+ ++
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVSGDMLPN--STEQAITVAVVPQSV 155
Query: 76 LKVIEEVLPALDEIRQKYGKGR 97
+ ++++ + E + +GR
Sbjct: 156 TECVQQICLVMLETLPQCPQGR 177
>gi|195499424|ref|XP_002096942.1| GE25952 [Drosophila yakuba]
gi|194183043|gb|EDW96654.1| GE25952 [Drosophila yakuba]
Length = 572
Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 15/135 (11%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PGP-ERILTIFAE 71
G +++L+P+ +G++IGKGG IA L+ D A V + PG ER+ I
Sbjct: 62 GETTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGS 121
Query: 72 LENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAG 131
E + V+E ++ D+IR+K D + + D ++++V S AG
Sbjct: 122 TEAIMVVLEFIM---DKIREK-------PDLTNKIVDVESKQTQERDKQVKILVPNSTAG 171
Query: 132 CIIGKGGTKIKELRD 146
IIGKGG IK++++
Sbjct: 172 MIIGKGGAFIKQIKE 186
Score = 38.5 bits (88), Expect = 0.86, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG----PERILTIFAELENG 75
D ++++L+P+ AG +IGKGG+ I +++ + + V + P ER +TI + EN
Sbjct: 158 DKQVKILVPNSTAGMIIGKGGAFIKQIKEESGSYVQISQKPKDVSLQERCITIIGDKENN 217
Query: 76 LKVIEEVLPALDEIRQ 91
+ +L + E Q
Sbjct: 218 KNACKMILSKIVEDPQ 233
>gi|322707130|gb|EFY98709.1| KH domain RNA-binding protein [Metarhizium anisopliae ARSEF 23]
Length = 368
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 67/130 (51%), Gaps = 20/130 (15%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGLKV 78
+ LR ++ S+ AG +IGKGG N+A LR++ KA V+ +R+LTI E + +
Sbjct: 47 LTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVHDRVLTITGECDAISRA 106
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCIIGK 136
V AL E G G+GG+ + + + I+L++ +Q G IIG+
Sbjct: 107 YAIVARALLE----------------GAPAMGMGGIVQSNGTHPIKLLISHNQMGTIIGR 150
Query: 137 GGTKIKELRD 146
G KIK ++D
Sbjct: 151 QGLKIKHIQD 160
>gi|67969673|dbj|BAE01185.1| unnamed protein product [Macaca fascicularis]
Length = 324
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 14/118 (11%)
Query: 33 GSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEIRQK 92
GS+IGK G ++ ++R + A + + + PERI+T+ K ++ L+E
Sbjct: 7 GSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEE---- 62
Query: 93 YGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
D + +RL+V SQ G +IGKGG KIKE+R++ A
Sbjct: 63 --------DISSSMTNSTAAS--RPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGA 110
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 68/176 (38%), Gaps = 52/176 (29%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 79 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGIPQSI 136
Query: 76 LKVIEEV-LPALDEIRQKYGKGRGGE------------DGGDGYNGGGVGGLGKDDYD-- 120
++ ++++ + L+ + Q KG GG Y G + + D
Sbjct: 137 IECVKQICVVMLETLSQSPPKGVTIPYRPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKL 196
Query: 121 IRLIVHQSQ------------------------------AGCIIGKGGTKIKELRD 146
+L + QS GCIIG+ G KI E+R
Sbjct: 197 HQLAMQQSHFPMTHGNTGFSGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQ 252
>gi|224098894|ref|XP_002311309.1| predicted protein [Populus trichocarpa]
gi|222851129|gb|EEE88676.1| predicted protein [Populus trichocarpa]
Length = 447
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 17/138 (12%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PG-PERILTIFAELENGLK 77
D R L P R GS+IGKGG +LR D K+++ + + PG ER++TIF+ E
Sbjct: 9 DTVYRYLCPLRKIGSIIGKGGEIAKQLRADSKSNIRISEAMPGYDERVVTIFSSSEET-N 67
Query: 78 VIEE----VLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDY------DIRLIVHQ 127
+ E+ V PA D + + + D N +D + +R++V
Sbjct: 68 LFEDTGEYVCPAQDALFMVHDRV----IAEDLNNAAAAEEEEEDRFGEVQQVTVRMLVPT 123
Query: 128 SQAGCIIGKGGTKIKELR 145
Q GC+IGKGG I+ +R
Sbjct: 124 DQIGCVIGKGGQVIQNIR 141
>gi|116787223|gb|ABK24418.1| unknown [Picea sitchensis]
gi|224286491|gb|ACN40952.1| unknown [Picea sitchensis]
Length = 481
Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 71/138 (51%), Gaps = 9/138 (6%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC--PGPERILTIF 69
K++ G P D RLL+P+++ G +IG+ G + ++ + ++ + + + PER + +
Sbjct: 76 KKWPGWPGDNVFRLLVPTQMVGGIIGRKGEFVKKMCEETRSRIKILEGLRGTPERTVMVS 135
Query: 70 AELENGLKVIEEVLPALDEIRQKYGK-GRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQS 128
A+ E V PA+D I + + + GG DG GG G RL+V +
Sbjct: 136 AKEEPE----APVSPAMDGILRVHKRIIEGGPDGRGELGRAQQGGSGT--ISTRLLVAGT 189
Query: 129 QAGCIIGKGGTKIKELRD 146
QAG +IG+ G IK +++
Sbjct: 190 QAGSLIGRQGATIKAIQE 207
>gi|198416446|ref|XP_002119674.1| PREDICTED: similar to rCG61051 [Ciona intestinalis]
Length = 465
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 45/128 (35%), Positives = 65/128 (50%), Gaps = 16/128 (12%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVP-DCPGPERILTIFAELENGLKVI 79
+ +R+L+ + G +IGK G+NIA+ R++ A +T+ + PERI+TI K +
Sbjct: 10 ITVRMLMIGKEIGGIIGKAGTNIAKFRSESGARITISSEQSVPERIVTITGGRGQIHKAV 69
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
E + G+ D G + + IRLIV SQ G IIGKGG
Sbjct: 70 ELI------------AGKMHSDINSGLSNCATNTV---PVTIRLIVPASQCGSIIGKGGV 114
Query: 140 KIKELRDT 147
KIKE+RDT
Sbjct: 115 KIKEIRDT 122
>gi|350424346|ref|XP_003493765.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 1-like
[Bombus impatiens]
Length = 626
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 24/134 (17%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV--PDCPGP-ERILTIFAELENGL 76
D LR+L+ S + G++IG+ GS I ++ +A V V D G E+ +TI+ EN
Sbjct: 186 DFPLRILVQSEMVGAIIGRQGSTIRQITQMTRARVDVHRKDSLGAAEKAITIYGNPENCT 245
Query: 77 KVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGK 136
++++ E+ Q+ + Y GL K + +R++ H + G IIGK
Sbjct: 246 NACKKIM----EVTQQ-----------EAY------GLSKGEISLRILAHNNLIGRIIGK 284
Query: 137 GGTKIKELRDTFDA 150
GGT IK++ D
Sbjct: 285 GGTTIKKIMQDTDT 298
Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP-----GPERILTIFAELEN 74
++ LR+L + + G +IGKGG+ I ++ D +TV ERI+T+ ++N
Sbjct: 266 EISLRILAHNNLIGRIIGKGGTTIKKIMQDTDTKITVSSINDINNFNLERIITVKGSIDN 325
Query: 75 GLKVIEEVLPALDEIRQKY 93
K E ++ + ++RQ Y
Sbjct: 326 MSKA-ESMISS--KLRQSY 341
>gi|113205451|gb|AAW28569.2| KH domain containing protein, putative [Solanum demissum]
Length = 600
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 45/142 (31%), Positives = 66/142 (46%), Gaps = 27/142 (19%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRND----FKASVTVPDCPGPERILTIFAEL 72
GP D R L P+ GS+IG GG +LR + + S T+P C ER++TI++
Sbjct: 39 GPEDTVFRYLCPTGKIGSIIGVGGDIAKQLRTETNSKIRISETIPGCE--ERVVTIYSGS 96
Query: 73 ENGLKVIEE----VLPALDEIRQKYGKG-----RGGEDGGDGYNGGGVGGLGKDDYDIRL 123
E V E+ + PA D + + + + R ED D +R+
Sbjct: 97 EE-TNVSEDTGDLISPAQDALFRVHDRVLAEDLRMDEDLED-----------HQQITVRM 144
Query: 124 IVHQSQAGCIIGKGGTKIKELR 145
+V Q GC+IGKGG I+ LR
Sbjct: 145 LVPSDQIGCVIGKGGQVIQNLR 166
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 17/130 (13%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
+RL+ P+ G+VIGKGG I +LR + AS+ V IF + + E+
Sbjct: 274 VRLVCPTENVGAVIGKGGGIIKQLRQESGASIKVDSAAAEGDDCIIFVSAK---EAFEDQ 330
Query: 83 LPALDEIR--QKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
P +D Q + ++ GD RL+V S+ GC+IGKGG+
Sbjct: 331 SPTIDATMRLQPRSSEKTEKESGDAI------------LTTRLLVPSSRVGCLIGKGGSI 378
Query: 141 IKELRDTFDA 150
I E+R++ A
Sbjct: 379 INEMRNSTRA 388
Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 24 RLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
RLL+PS G +IGKGGS I +RN +AS+ V
Sbjct: 360 RLLVPSSRVGCLIGKGGSIINEMRNSTRASIRV 392
>gi|356573119|ref|XP_003554712.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 1-like
[Glycine max]
Length = 446
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 10/140 (7%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIF 69
K++ G P + R+L+P++ G +IG+ G I ++ + +A V + D P +R + I
Sbjct: 38 KKWPGWPGESVFRMLVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTVQRAVMIS 97
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
A+ E G V PA+D + + + + G + + GV G +L+V SQ
Sbjct: 98 AKEEPG----SSVPPAVDGLLRVHKRIIDGLESDFTHAPSGVAG----KVSTKLLVPASQ 149
Query: 130 AGCIIGKGGTKIKELRDTFD 149
AG +IGK G +K +++ +
Sbjct: 150 AGSLIGKQGGTVKSIQEASN 169
>gi|149036630|gb|EDL91248.1| similar to Pol(yrC)-binding protein 1 (Alpha-CP1) (hnRNP-E1)
(predicted) [Rattus norvegicus]
Length = 337
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 14/118 (11%)
Query: 33 GSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEIRQK 92
GS+IGK G ++ R+R + A + + + PERI+T+ K ++ L+E
Sbjct: 7 GSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMIIDKLEE---- 62
Query: 93 YGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
D + +RL+V +Q G +IGKGG KIKE+R++ A
Sbjct: 63 --------DINSSMTNSTAAS--RPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGA 110
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 79 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGVPQSV 136
Query: 76 LKVIEEVLPALDEIRQKYGKGR 97
+ ++++ + E + +GR
Sbjct: 137 TECVKQICLVMLETLSQSPQGR 158
>gi|195158519|ref|XP_002020133.1| GL13824 [Drosophila persimilis]
gi|194116902|gb|EDW38945.1| GL13824 [Drosophila persimilis]
Length = 554
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 15/135 (11%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTIFAE 71
G +++L+P+ +G++IGKGG IA L+ D A V + PG ER+ I
Sbjct: 68 GETTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGS 127
Query: 72 LENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAG 131
E + V++ + +D+IR+K D + D ++++V S AG
Sbjct: 128 TEAIMVVLDFI---MDKIREK-------PDLTTKIIDAESKQTQERDKQVKILVPNSTAG 177
Query: 132 CIIGKGGTKIKELRD 146
IIGKGG IK++++
Sbjct: 178 MIIGKGGAFIKQIKE 192
Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG----PERILTIFAELENG 75
D ++++L+P+ AG +IGKGG+ I +++ D + V + P ER +TI + EN
Sbjct: 164 DKQVKILVPNSTAGMIIGKGGAFIKQIKEDSGSYVQISQKPKDVSLQERCITIIGDKENN 223
Query: 76 LKVIEEVLPALDEIRQ 91
+ +L + E Q
Sbjct: 224 KNACKMILSKIVEDPQ 239
>gi|328702094|ref|XP_003241800.1| PREDICTED: hypothetical protein LOC100161431 isoform 2
[Acyrthosiphon pisum]
gi|328702096|ref|XP_001944651.2| PREDICTED: hypothetical protein LOC100161431 isoform 1
[Acyrthosiphon pisum]
Length = 657
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 23/133 (17%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRND----FKASVTVPDCPG-PERILTIFAELENGLK 77
+++LIP AG++IGKGG IA+L+ + K S T PG ER+ I
Sbjct: 198 MKILIPCITAGAIIGKGGETIAQLQTETNTKIKMSKTNDFYPGTTERVCIISGSSS---- 253
Query: 78 VIEEVLPAL----DEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCI 133
E ++ AL + IR+K ++ GD + + +++++ S AG I
Sbjct: 254 --EHIMAALTFIMERIREKPDASNRVQNSGD--------AIADREKQVKILIPNSTAGMI 303
Query: 134 IGKGGTKIKELRD 146
IGK G IK+L++
Sbjct: 304 IGKAGAYIKQLKE 316
Score = 35.4 bits (80), Expect = 7.6, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRND----FKASVTVPDCPGPERILTIFAELENGLK 77
++++LIP+ AG +IGK G+ I +L+ D + S D ER +T+ E K
Sbjct: 290 QVKILIPNSTAGMIIGKAGAYIKQLKEDSGCFVQISQKAKDTTLQERCITVSGNTEGNKK 349
Query: 78 V 78
V
Sbjct: 350 V 350
>gi|449445515|ref|XP_004140518.1| PREDICTED: poly(rC)-binding protein 2-like [Cucumis sativus]
gi|449529952|ref|XP_004171961.1| PREDICTED: poly(rC)-binding protein 2-like [Cucumis sativus]
Length = 276
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 13/133 (9%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--PERILTIFA-ELENG 75
+DV R+++PS+ G VIGK G I ++R + KA++ + D ER++ I + + EN
Sbjct: 67 HDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDNENS 126
Query: 76 LKVIEEVLPALDEIRQKYGKGRGGEDGGDGYN-GGGVGGLGKDDYDIRLIVHQSQAGCII 134
+ E+ L Q+ EDG G G + + IRL++ SQAG +I
Sbjct: 127 VTDAEKAL-------QQIAALILKEDGSSIEELKVGTGHVAAN--TIRLLIAGSQAGSLI 177
Query: 135 GKGGTKIKELRDT 147
G G I++LR++
Sbjct: 178 GASGQNIEKLRNS 190
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV------PDCPGP---ERILTIFAELE 73
+RLLI AGS+IG G NI +LRN AS+T+ P C +R++ I ++
Sbjct: 164 IRLLIAGSQAGSLIGASGQNIEKLRNSSGASITILAPNQLPLCASAHESDRVVQISGDIL 223
Query: 74 NGLKVIEEV 82
LK +EE+
Sbjct: 224 AVLKALEEI 232
>gi|124808479|ref|XP_001348324.1| RNA-binding protein Nova-1, putative [Plasmodium falciparum 3D7]
gi|23497216|gb|AAN36763.1| RNA-binding protein Nova-1, putative [Plasmodium falciparum 3D7]
Length = 337
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 17/130 (13%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRN----DFKASVTVPDCPGP-ERILTIFAELENGLK 77
++LLI + VAGSVIGK GS I + N K S P ER+L + +++ +
Sbjct: 21 VKLLINNLVAGSVIGKHGSIITSIENKTGCSLKLSPNNSYFPNTQERVLVLCGKID---Q 77
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKG 137
+ + +L LD+I++ + + + NG Y R++V +S IIGKG
Sbjct: 78 IKDALLIILDKIKEV--ANQHSHEKQNMMNGAA-------KYTCRIVVPKSAVSAIIGKG 128
Query: 138 GTKIKELRDT 147
G +IK+L+D+
Sbjct: 129 GQQIKQLQDS 138
>gi|195445981|ref|XP_002070572.1| GK10958 [Drosophila willistoni]
gi|194166657|gb|EDW81558.1| GK10958 [Drosophila willistoni]
Length = 578
Score = 51.6 bits (122), Expect = 9e-05, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 15/135 (11%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTIFAE 71
G + +++L+P+ +G++IGKGG IA L+ D A V + PG ER+ I
Sbjct: 62 GDSTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGS 121
Query: 72 LENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAG 131
E + V++ + +D+IR+K D + D ++++V S AG
Sbjct: 122 TEGIMTVLDFI---MDKIREK-------PDLTTKIIDAESKQTQERDKQVKILVPNSTAG 171
Query: 132 CIIGKGGTKIKELRD 146
IIGKGG IK++++
Sbjct: 172 MIIGKGGAFIKQIKE 186
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG----PERILTIFAELENG 75
D ++++L+P+ AG +IGKGG+ I +++ + + V + P ER +TI + EN
Sbjct: 158 DKQVKILVPNSTAGMIIGKGGAFIKQIKEESGSYVQISQKPKDVSLQERCITIIGDKENN 217
Query: 76 LKVIEEVLPALDEIRQ 91
+ +L + E Q
Sbjct: 218 KNACKMILSKIVEDPQ 233
>gi|390177066|ref|XP_003736270.1| GA30025, isoform D [Drosophila pseudoobscura pseudoobscura]
gi|388858894|gb|EIM52343.1| GA30025, isoform D [Drosophila pseudoobscura pseudoobscura]
Length = 576
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 15/135 (11%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTIFAE 71
G +++L+P+ +G++IGKGG IA L+ D A V + PG ER+ I
Sbjct: 68 GETTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGS 127
Query: 72 LENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAG 131
E + V++ + +D+IR+K D + D ++++V S AG
Sbjct: 128 TEAIMVVLDFI---MDKIREK-------PDLTTKIIDAESKQTQERDKQVKILVPNSTAG 177
Query: 132 CIIGKGGTKIKELRD 146
IIGKGG IK++++
Sbjct: 178 MIIGKGGAFIKQIKE 192
Score = 40.8 bits (94), Expect = 0.20, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG----PERILTIFAELENG 75
D ++++L+P+ AG +IGKGG+ I +++ D + V + P ER +TI + EN
Sbjct: 164 DKQVKILVPNSTAGMIIGKGGAFIKQIKEDSGSYVQISQKPKDVSLQERCITIIGDKENN 223
Query: 76 LKVIEEVLPALDEIRQ 91
+ +L + E Q
Sbjct: 224 KNACKMILSKIVEDPQ 239
>gi|194741910|ref|XP_001953430.1| GF17214 [Drosophila ananassae]
gi|190626489|gb|EDV42013.1| GF17214 [Drosophila ananassae]
Length = 532
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 15/135 (11%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTIFAE 71
G +++L+P+ +G++IGKGG IA L+ D A V + PG ER+ I
Sbjct: 62 GETTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGS 121
Query: 72 LENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAG 131
E + V++ + +D+IR+K D + D ++++V S AG
Sbjct: 122 TEAIMFVLDFI---MDKIREK-------PDLTTKIIDAESKQTQERDKQVKILVPNSTAG 171
Query: 132 CIIGKGGTKIKELRD 146
IIGKGG IK++++
Sbjct: 172 MIIGKGGAFIKQIKE 186
Score = 39.3 bits (90), Expect = 0.57, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG----PERILTIFAELENG 75
D ++++L+P+ AG +IGKGG+ I +++ + + V + P ER +TI + EN
Sbjct: 158 DKQVKILVPNSTAGMIIGKGGAFIKQIKEESGSYVQISQKPKDVSLQERCITIIGDKENN 217
Query: 76 LKVIEEVLPALDEIRQ 91
+ +L + E Q
Sbjct: 218 KNACKMILSKIVEDPQ 233
>gi|356505941|ref|XP_003521747.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 443
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 10/140 (7%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIF 69
K++ G P + R+L+P++ G +IG+ G I ++ + +A V + D P +R + I
Sbjct: 35 KKWPGWPGESVFRMLVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTVQRAVMIS 94
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
A+ E G V PA+D + + + + G + + GV G +L+V SQ
Sbjct: 95 AKEEPG----SSVPPAVDGLLRIHKRIIDGLESDFTHAPSGVAG----KVSTKLLVPASQ 146
Query: 130 AGCIIGKGGTKIKELRDTFD 149
AG +IGK G +K +++ +
Sbjct: 147 AGSLIGKQGGTVKSIQEASN 166
>gi|395752934|ref|XP_002830848.2| PREDICTED: poly(rC)-binding protein 3 [Pongo abelii]
Length = 432
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 14/118 (11%)
Query: 33 GSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEIRQK 92
GS+IGK G + ++R + A + + + PERI+TI + K A I K
Sbjct: 56 GSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFK-------AFAMIAYK 108
Query: 93 YGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
+ ED + + K +RL+V SQ G +IGKGG+KIKE+R++ A
Sbjct: 109 FE-----EDIINSMSNSP--ATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGA 159
Score = 39.3 bits (90), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 111 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 163
>gi|256078995|ref|XP_002575777.1| far upstream (fuse) binding protein [Schistosoma mansoni]
gi|360043992|emb|CCD81538.1| putative far upstream (fuse) binding protein [Schistosoma mansoni]
Length = 396
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 55/131 (41%), Gaps = 22/131 (16%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
V IP R G VIGKGG I +L+ND + V + PER +T+ +
Sbjct: 99 VTTETAIPDRYVGLVIGKGGEQITQLQNDTQCKVQISQAGTPERTVTLTGTPQQ------ 152
Query: 81 EVLPALDEIRQKYG-----KGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIG 135
+D +Q G G+ G YN G I ++V +AG +IG
Sbjct: 153 -----IDHAKQMIGDIIERAGKNGTPTTPAYNSTG------SITTIEMMVPGLKAGLVIG 201
Query: 136 KGGTKIKELRD 146
K G IK L++
Sbjct: 202 KNGETIKNLQE 212
>gi|413933965|gb|AFW68516.1| hypothetical protein ZEAMMB73_983755 [Zea mays]
Length = 537
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 21/144 (14%)
Query: 18 PNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PGP-ERILTIF------ 69
P + R+L P++ GSV+G+GG + LR + KA + V D PG ER++ IF
Sbjct: 40 PIETIYRILCPAKKIGSVLGRGGDIVKALREETKAKIRVADSIPGADERVIIIFNYQNQP 99
Query: 70 --------AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDI 121
++ +GL ++ A D + + + K E + + DD
Sbjct: 100 ELTDEAAEKQISDGLGNMKPHCFAQDALLKIHDKIVADEIYDEVAHDE-----SSDDVTA 154
Query: 122 RLIVHQSQAGCIIGKGGTKIKELR 145
R++V +Q GC++GKGG+ I++LR
Sbjct: 155 RILVQGNQVGCLLGKGGSIIQQLR 178
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 30/143 (20%)
Query: 14 FRGGPN-------DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV----PDCPGP 62
+R GP + +R+L S + GSVIGK G+N+ R+ A + V D G
Sbjct: 276 YRSGPQYPVSETEEFSIRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASGE 335
Query: 63 ERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIR 122
I+ E+ E + P ++ + + K + K R
Sbjct: 336 RLIIVSSNEIPT-----EPISPTIEALILLHDKVSASSE--------------KHHSSTR 376
Query: 123 LIVHQSQAGCIIGKGGTKIKELR 145
L+V ++ GCI+G+GG I E+R
Sbjct: 377 LVVPSNKVGCILGEGGQVITEMR 399
>gi|256078997|ref|XP_002575778.1| far upstream (fuse) binding protein [Schistosoma mansoni]
gi|360043991|emb|CCD81537.1| putative far upstream (fuse) binding protein [Schistosoma mansoni]
Length = 373
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 55/131 (41%), Gaps = 22/131 (16%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
V IP R G VIGKGG I +L+ND + V + PER +T+ +
Sbjct: 99 VTTETAIPDRYVGLVIGKGGEQITQLQNDTQCKVQISQAGTPERTVTLTGTPQQ------ 152
Query: 81 EVLPALDEIRQKYG-----KGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIG 135
+D +Q G G+ G YN G I ++V +AG +IG
Sbjct: 153 -----IDHAKQMIGDIIERAGKNGTPTTPAYNSTG------SITTIEMMVPGLKAGLVIG 201
Query: 136 KGGTKIKELRD 146
K G IK L++
Sbjct: 202 KNGETIKNLQE 212
>gi|53749469|gb|AAU90323.1| KH domain containing protein [Solanum demissum]
Length = 533
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 66/142 (46%), Gaps = 27/142 (19%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRND----FKASVTVPDCPGPERILTIFAEL 72
GP D R L P+ GS+IG GG +LR + + S T+P C ER++TI++
Sbjct: 39 GPEDTVFRYLCPTGKIGSIIGVGGDIAKQLRTETNSKIRISETIPGCE--ERVVTIYSGS 96
Query: 73 ENGLKVIEE----VLPALDEIRQKYGKG-----RGGEDGGDGYNGGGVGGLGKDDYDIRL 123
E V E+ + PA D + + + + R ED D +R+
Sbjct: 97 EE-TNVSEDTGDLISPAQDALFRVHDRVLAEDLRMDEDLED-----------HQQITVRM 144
Query: 124 IVHQSQAGCIIGKGGTKIKELR 145
+V Q GC+IGKGG I+ LR
Sbjct: 145 LVPSDQIGCVIGKGGQVIQNLR 166
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 17/130 (13%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
+RL+ P+ G+VIGKGG I +LR + AS+ V IF + + E+
Sbjct: 274 VRLVCPTENVGAVIGKGGGIIKQLRQESGASIKVDSAAAEGDDCIIFVSAK---EAFEDQ 330
Query: 83 LPALDEIR--QKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
P +D Q + ++ GD RL+V S+ GC+IGKGG+
Sbjct: 331 SPTIDATMRLQPRSSEKTEKESGDAI------------LTTRLLVPSSRVGCLIGKGGSI 378
Query: 141 IKELRDTFDA 150
I E+R++ A
Sbjct: 379 INEMRNSTRA 388
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 24 RLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
RLL+PS G +IGKGGS I +RN +AS+ V
Sbjct: 360 RLLVPSSRVGCLIGKGGSIINEMRNSTRASIRV 392
>gi|425769369|gb|EKV07864.1| hypothetical protein PDIP_71440 [Penicillium digitatum Pd1]
gi|425770994|gb|EKV09451.1| hypothetical protein PDIG_62050 [Penicillium digitatum PHI26]
Length = 364
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 69/132 (52%), Gaps = 22/132 (16%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPG-PERILTIFAELENGL 76
++ LR ++ S+ AG +IGK G N+A LR++ KA V+ PG +R+LT+ +L +
Sbjct: 44 ELTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVS-KVVPGVHDRVLTVTGQLRSLA 102
Query: 77 KVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCII 134
+ V L E G G+GG+ ++ + IRL++ +Q G II
Sbjct: 103 RAYAIVAKGLLE----------------GAPQMGMGGIVSNNGTHPIRLLISHNQMGTII 146
Query: 135 GKGGTKIKELRD 146
G+ G KIK ++D
Sbjct: 147 GRQGLKIKHIQD 158
>gi|353232241|emb|CCD79596.1| putative heterogeneous nuclear ribonucleoprotein k [Schistosoma
mansoni]
Length = 3120
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 25/86 (29%)
Query: 61 GPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYD 120
GPER+L + +L + ++++ R+ + K + D D D
Sbjct: 1798 GPERVLVVDGDLGSVIEIL----------RENHEKIQSNRD---------------DGVD 1832
Query: 121 IRLIVHQSQAGCIIGKGGTKIKELRD 146
+RL+V+QSQAGC+IG+ G KIKELR+
Sbjct: 1833 LRLLVNQSQAGCVIGRAGYKIKELRE 1858
>gi|339234853|ref|XP_003378981.1| putative KH domain protein [Trichinella spiralis]
gi|316978396|gb|EFV61386.1| putative KH domain protein [Trichinella spiralis]
Length = 432
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 14/139 (10%)
Query: 15 RGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRND---FKASVTVPDCPGPERILTIFAE 71
G V +++LIP +G+VIG+ GS+IA L+ + ++ P PER+L I
Sbjct: 45 HGDEQQVMIKVLIPRTASGAVIGRNGSHIASLKRKSLLHQLKMSKPSELFPERVLLIAGP 104
Query: 72 LENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAG 131
L + ++VI+ + + E Q+ + E N ++L++ S AG
Sbjct: 105 LSSVVEVIQFTMTKIQE--QQAFNTKPDEFDFKHANRSS---------QVKLVIANSSAG 153
Query: 132 CIIGKGGTKIKELRDTFDA 150
IIGK G +I+ +++ A
Sbjct: 154 VIIGKAGEEIRVIKEETHA 172
>gi|256082569|ref|XP_002577527.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
Length = 3120
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 25/86 (29%)
Query: 61 GPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYD 120
GPER+L + +L + ++++ R+ + K + D D D
Sbjct: 1798 GPERVLVVDGDLGSVIEIL----------RENHEKIQSNRD---------------DGVD 1832
Query: 121 IRLIVHQSQAGCIIGKGGTKIKELRD 146
+RL+V+QSQAGC+IG+ G KIKELR+
Sbjct: 1833 LRLLVNQSQAGCVIGRAGYKIKELRE 1858
>gi|449442959|ref|XP_004139248.1| PREDICTED: poly(rC)-binding protein 3-like [Cucumis sativus]
Length = 483
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 70/139 (50%), Gaps = 15/139 (10%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIF 69
K++ G P + R+L+P++ GS+IG+ G I ++ + +A + + D P ER + +
Sbjct: 76 KKWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTAERAVMVS 135
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGY--NGGGVGGLGKDDYDIRLIVHQ 127
A+ E PA+D + + + + G +G + + N G RL+V
Sbjct: 136 AKDEPD----SAFPPAVDGLLRVHKRIVDGLEGDNAHAPNAG-------SKVSTRLLVAA 184
Query: 128 SQAGCIIGKGGTKIKELRD 146
SQAG +IGK G +K +++
Sbjct: 185 SQAGSLIGKQGGTVKSIQE 203
>gi|19075184|ref|NP_587684.1| RNA-binding protein [Schizosaccharomyces pombe 972h-]
gi|74626925|sp|O74919.1|RNC1_SCHPO RecName: Full=RNA-binding protein rnc1; AltName: Full=RNA-binding
protein that suppresses calcineurin deletion 1
gi|3702642|emb|CAA21234.1| RNA-binding protein that suppresses calcineurin deletion Rnc1
[Schizosaccharomyces pombe]
Length = 398
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 21/130 (16%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRN--DFKASVT--VPDCPGPERILTIFAELENGL 76
+ LR L+ +R AG +IGK G N+A LR+ + KA VT VP+ +R+LTI LEN +
Sbjct: 94 LTLRALLSTREAGIIIGKAGKNVAELRSTTNVKAGVTKAVPNV--HDRVLTISGPLENVV 151
Query: 77 KVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGK 136
+ ++ + N G +RL++ S G IIG+
Sbjct: 152 RAYRFIIDIF---------------AKNSTNPDGTPSDANTPRKLRLLIAHSLMGSIIGR 196
Query: 137 GGTKIKELRD 146
G +IK ++D
Sbjct: 197 NGLRIKLIQD 206
>gi|326470883|gb|EGD94892.1| KH domain RNA-binding protein [Trichophyton tonsurans CBS 112818]
gi|326478447|gb|EGE02457.1| KH domain RNA-binding protein [Trichophyton equinum CBS 127.97]
Length = 367
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 20/128 (15%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGLKVIE 80
LR ++ S+ AG +IGK G N+A LR++ KA V+ +R+LT+ L+ K
Sbjct: 50 LRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTGPLQGTSKAYS 109
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCIIGKGG 138
V +L E G G+GG+ +++ + +RL++ +Q G IIG+ G
Sbjct: 110 IVAKSLLE----------------GAPQMGMGGVVQNNGTHSVRLLISHNQMGTIIGRQG 153
Query: 139 TKIKELRD 146
KIK ++D
Sbjct: 154 LKIKYIQD 161
>gi|326378247|gb|ADZ57223.1| neuro-oncological ventral antigen [Branchiostoma lanceolatum]
Length = 508
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 16/133 (12%)
Query: 16 GGPNDVEL--RLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PGPERILTIF 69
GGP D +L ++LIPS AGS+IGKGG I +L+ + A++ + PG + +
Sbjct: 59 GGPEDGQLLLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSNDFYPGTTERIVVI 118
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
E+ LK + + L +++I Q + N ++++V S
Sbjct: 119 TGSEDSLKSVHKFL--MEKIGQAPRPPAKSPSEQNANNNRA--------KQVKIVVPNST 168
Query: 130 AGCIIGKGGTKIK 142
AG IIGKGG IK
Sbjct: 169 AGLIIGKGGATIK 181
>gi|358398587|gb|EHK47938.1| hypothetical protein TRIATDRAFT_47313 [Trichoderma atroviride IMI
206040]
Length = 369
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 66/131 (50%), Gaps = 20/131 (15%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGLKV 78
+ LR ++ S+ AG +IGKGG N+A LR++ KA V+ +R+LTI + +
Sbjct: 46 LTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVHDRVLTITGGCDAISRA 105
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGL--GKDDYDIRLIVHQSQAGCIIGK 136
V AL E G G+GG+ G + I+L++ +Q G IIG+
Sbjct: 106 YAIVARALLE----------------GAPAVGMGGIVQGNGTHPIKLLISHNQMGTIIGR 149
Query: 137 GGTKIKELRDT 147
G KIK ++DT
Sbjct: 150 QGLKIKHIQDT 160
>gi|389585810|dbj|GAB68540.1| RNA-binding protein Nova-1, partial [Plasmodium cynomolgi strain B]
Length = 278
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 66/133 (49%), Gaps = 18/133 (13%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRN----DFKASVTVPDCPGP-ERILTIFAELENGLK 77
+++L+ + VAGSVIGK GS I + N K S T P ER+L + + E +
Sbjct: 20 VKMLVNNLVAGSVIGKNGSIITSIENKTGCSLKLSPTNSYFPNTQERVLVLCGKQE---Q 76
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKG 137
+ +L LD+IRQ ++ D N Y R++V +S IIGKG
Sbjct: 77 INNALLIILDKIRQI-----TTQNFQDKQNINTA-----PKYTCRIVVPKSAVSAIIGKG 126
Query: 138 GTKIKELRDTFDA 150
G +IK+L+D+ A
Sbjct: 127 GQQIKQLQDSTGA 139
>gi|256078999|ref|XP_002575779.1| far upstream (fuse) binding protein [Schistosoma mansoni]
gi|360043990|emb|CCD81536.1| putative far upstream (fuse) binding protein [Schistosoma mansoni]
Length = 334
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 55/131 (41%), Gaps = 22/131 (16%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
V IP R G VIGKGG I +L+ND + V + PER +T+ +
Sbjct: 99 VTTETAIPDRYVGLVIGKGGEQITQLQNDTQCKVQISQAGTPERTVTLTGTPQQ------ 152
Query: 81 EVLPALDEIRQKYG-----KGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIG 135
+D +Q G G+ G YN G I ++V +AG +IG
Sbjct: 153 -----IDHAKQMIGDIIERAGKNGTPTTPAYNSTG------SITTIEMMVPGLKAGLVIG 201
Query: 136 KGGTKIKELRD 146
K G IK L++
Sbjct: 202 KNGETIKNLQE 212
>gi|302654659|ref|XP_003019130.1| hypothetical protein TRV_06814 [Trichophyton verrucosum HKI 0517]
gi|291182834|gb|EFE38485.1| hypothetical protein TRV_06814 [Trichophyton verrucosum HKI 0517]
Length = 379
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 20/128 (15%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGLKVIE 80
LR ++ S+ AG +IGK G N+A LR++ KA V+ +R+LT+ L+ K
Sbjct: 62 LRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTGPLQGTSKAYS 121
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCIIGKGG 138
V +L E G G+GG+ +++ + +RL++ +Q G IIG+ G
Sbjct: 122 IVAKSLLE----------------GAPQMGMGGVVQNNGTHSVRLLISHNQMGTIIGRQG 165
Query: 139 TKIKELRD 146
KIK ++D
Sbjct: 166 LKIKYIQD 173
>gi|327307466|ref|XP_003238424.1| KH domain RNA-binding protein [Trichophyton rubrum CBS 118892]
gi|326458680|gb|EGD84133.1| KH domain RNA-binding protein [Trichophyton rubrum CBS 118892]
Length = 367
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 20/128 (15%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGLKVIE 80
LR ++ S+ AG +IGK G N+A LR++ KA V+ +R+LT+ L+ K
Sbjct: 50 LRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTGPLQGTSKAYS 109
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCIIGKGG 138
V +L E G G+GG+ +++ + +RL++ +Q G IIG+ G
Sbjct: 110 IVAKSLLE----------------GAPQMGMGGVVQNNGTHSVRLLISHNQMGTIIGRQG 153
Query: 139 TKIKELRD 146
KIK ++D
Sbjct: 154 LKIKYIQD 161
>gi|15237393|ref|NP_199431.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|9757739|dbj|BAB08264.1| unnamed protein product [Arabidopsis thaliana]
gi|14532588|gb|AAK64022.1| unknown protein [Arabidopsis thaliana]
gi|21280941|gb|AAM44907.1| unknown protein [Arabidopsis thaliana]
gi|332007968|gb|AED95351.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 644
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 10/134 (7%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFAELENGLK 77
V R+L PS V GSVIGK G I +R + +A + V D P P ER++TIF +
Sbjct: 44 VVYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVD-PFPGCSERVITIFCSVSEKKD 102
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGG-----LGKDDY-DIRLIVHQSQAG 131
+++ LD D + +DD+ + RL+V SQ
Sbjct: 103 IVDIEYSELDYSVPLCSAQAALLKVHDAIVASLATAAENTKIDRDDFRECRLLVPSSQCS 162
Query: 132 CIIGKGGTKIKELR 145
+IGK G+ IK +R
Sbjct: 163 IVIGKSGSIIKNIR 176
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV------PDCPGP-ERILTIFAELE 73
V+++LL+ S+V G +IGK GS I+ +R KA + + P C P + ++ I E+
Sbjct: 399 VKMQLLVSSKVIGCIIGKSGSIISEIRKRTKADIHISKGNNTPKCADPNDELVEISGEVS 458
Query: 74 N 74
N
Sbjct: 459 N 459
>gi|413933966|gb|AFW68517.1| hypothetical protein ZEAMMB73_983755 [Zea mays]
Length = 428
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 21/144 (14%)
Query: 18 PNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PGP-ERILTIF------ 69
P + R+L P++ GSV+G+GG + LR + KA + V D PG ER++ IF
Sbjct: 40 PIETIYRILCPAKKIGSVLGRGGDIVKALREETKAKIRVADSIPGADERVIIIFNYQNQP 99
Query: 70 --------AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDI 121
++ +GL ++ A D + + + K E + + DD
Sbjct: 100 ELTDEAAEKQISDGLGNMKPHCFAQDALLKIHDKIVADEIYDEVAHDE-----SSDDVTA 154
Query: 122 RLIVHQSQAGCIIGKGGTKIKELR 145
R++V +Q GC++GKGG+ I++LR
Sbjct: 155 RILVQGNQVGCLLGKGGSIIQQLR 178
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 30/143 (20%)
Query: 14 FRGGPN-------DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV----PDCPGP 62
+R GP + +R+L S + GSVIGK G+N+ R+ A + V D G
Sbjct: 276 YRSGPQYPVSETEEFSIRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASGE 335
Query: 63 ERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIR 122
I+ E+ E + P ++ + + K + K R
Sbjct: 336 RLIIVSSNEIPT-----EPISPTIEALILLHDKVSASSE--------------KHHSSTR 376
Query: 123 LIVHQSQAGCIIGKGGTKIKELR 145
L+V ++ GCI+G+GG I E+R
Sbjct: 377 LVVPSNKVGCILGEGGQVITEMR 399
>gi|226494805|ref|NP_001148654.1| KH domain containing protein [Zea mays]
gi|195621126|gb|ACG32393.1| KH domain containing protein [Zea mays]
Length = 529
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 10/137 (7%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--PERILTIF 69
K++ G P + R+L+P+ G+VIG+ G I ++ + +A + V + P PER + I
Sbjct: 98 KKWPGWPGESVFRILVPTTKVGAVIGRKGDFIKKMCEESRARIKVLEGPPAVPERAVMIS 157
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
A+ E E+ PA+D + + + + G + G RL+V SQ
Sbjct: 158 AKDEPD----TELPPAVDGLLRVHRRITDGLETETDQPQRATVNTGP----TRLLVPASQ 209
Query: 130 AGCIIGKGGTKIKELRD 146
AG +IGK G IK ++D
Sbjct: 210 AGSLIGKQGATIKSIQD 226
>gi|390177064|ref|XP_003736269.1| GA30025, isoform C [Drosophila pseudoobscura pseudoobscura]
gi|388858893|gb|EIM52342.1| GA30025, isoform C [Drosophila pseudoobscura pseudoobscura]
Length = 554
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 15/129 (11%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTIFAELENGLK 77
+++L+P+ +G++IGKGG IA L+ D A V + PG ER+ I E +
Sbjct: 52 MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEAIMV 111
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKG 137
V++ + +D+IR+K D + D ++++V S AG IIGKG
Sbjct: 112 VLDFI---MDKIREK-------PDLTTKIIDAESKQTQERDKQVKILVPNSTAGMIIGKG 161
Query: 138 GTKIKELRD 146
G IK++++
Sbjct: 162 GAFIKQIKE 170
Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG----PERILTIFAELENG 75
D ++++L+P+ AG +IGKGG+ I +++ D + V + P ER +TI + EN
Sbjct: 142 DKQVKILVPNSTAGMIIGKGGAFIKQIKEDSGSYVQISQKPKDVSLQERCITIIGDKENN 201
Query: 76 LKVIEEVLPALDEIRQ 91
+ +L + E Q
Sbjct: 202 KNACKMILSKIVEDPQ 217
>gi|302508471|ref|XP_003016196.1| hypothetical protein ARB_05593 [Arthroderma benhamiae CBS 112371]
gi|291179765|gb|EFE35551.1| hypothetical protein ARB_05593 [Arthroderma benhamiae CBS 112371]
Length = 531
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 16/126 (12%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGLKVIE 80
LR ++ S+ AG +IGK G N+A LR++ KA V+ +R+LT+ L+ K
Sbjct: 214 LRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTGPLQGTSKAYS 273
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
V +L E + G G ++ G + +RL++ +Q G IIG+ G K
Sbjct: 274 IVAKSLLEGAPQMGMGGVVQNNG--------------THSVRLLISHNQMGTIIGRQGLK 319
Query: 141 IKELRD 146
IK ++D
Sbjct: 320 IKYIQD 325
>gi|296825084|ref|XP_002850758.1| KH domain RNA-binding protein [Arthroderma otae CBS 113480]
gi|238838312|gb|EEQ27974.1| KH domain RNA-binding protein [Arthroderma otae CBS 113480]
Length = 367
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 20/128 (15%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGLKVIE 80
LR ++ S+ AG +IGK G N+A LR++ KA V+ +R+LT+ L+ K
Sbjct: 50 LRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTGPLQGTSKAYS 109
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCIIGKGG 138
V +L E G G+GG+ +++ + +RL++ +Q G IIG+ G
Sbjct: 110 IVAKSLLE----------------GAPQMGMGGVVQNNGTHSVRLLISHNQMGTIIGRQG 153
Query: 139 TKIKELRD 146
KIK ++D
Sbjct: 154 LKIKYIQD 161
>gi|72084060|ref|XP_790705.1| PREDICTED: uncharacterized protein LOC585801 isoform 2
[Strongylocentrotus purpuratus]
Length = 557
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 46/139 (33%), Positives = 65/139 (46%), Gaps = 19/139 (13%)
Query: 16 GGP---NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PGP-ERILT 67
GGP N L++LIPS AGS+IGKGG IA+L+ D +V + PG ER+
Sbjct: 69 GGPIDDNKYMLKMLIPSTAAGSIIGKGGQTIAQLQRDTGTNVKLSKANDFYPGTQERVAL 128
Query: 68 IFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQ 127
+ +E+ V +L + E Q G G E ++++V
Sbjct: 129 LTGPVESLNNVAVFILDKIKESPQ-LGVKAGAETITSPERA----------RQVKIVVPN 177
Query: 128 SQAGCIIGKGGTKIKELRD 146
S AG IIGKGG IK + +
Sbjct: 178 STAGLIIGKGGAMIKSIME 196
>gi|256078993|ref|XP_002575776.1| far upstream (fuse) binding protein [Schistosoma mansoni]
gi|360043993|emb|CCD81539.1| putative far upstream (fuse) binding protein [Schistosoma mansoni]
Length = 356
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 12/126 (9%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
V IP R G VIGKGG I +L+ND + V + PER +T+ + I+
Sbjct: 99 VTTETAIPDRYVGLVIGKGGEQITQLQNDTQCKVQISQAGTPERTVTLTGTPQQ----ID 154
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
+ +I ++ GK G YN G I ++V +AG +IGK G
Sbjct: 155 HAKQMIGDIIERAGK--NGTPTTPAYNSTG------SITTIEMMVPGLKAGLVIGKNGET 206
Query: 141 IKELRD 146
IK L++
Sbjct: 207 IKNLQE 212
>gi|315055291|ref|XP_003177020.1| hypothetical protein MGYG_01105 [Arthroderma gypseum CBS 118893]
gi|311338866|gb|EFQ98068.1| hypothetical protein MGYG_01105 [Arthroderma gypseum CBS 118893]
Length = 367
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 20/128 (15%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGLKVIE 80
LR ++ S+ AG +IGK G N+A LR++ KA V+ +R+LT+ L+ K
Sbjct: 50 LRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTGPLQGTSKAYS 109
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCIIGKGG 138
V +L E G G+GG+ +++ + +RL++ +Q G IIG+ G
Sbjct: 110 IVAKSLLE----------------GAPQMGMGGVVQNNGTHSVRLLISHNQMGTIIGRQG 153
Query: 139 TKIKELRD 146
KIK ++D
Sbjct: 154 LKIKYIQD 161
>gi|21553916|gb|AAM62999.1| unknown [Arabidopsis thaliana]
Length = 644
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 10/134 (7%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFAELENGLK 77
V R+L PS V GSVIGK G I +R + +A + V D P P ER++TIF +
Sbjct: 44 VVYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVD-PFPGCSERVITIFCSVSEKKD 102
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGG-----LGKDDY-DIRLIVHQSQAG 131
+++ LD D + +DD+ + RL+V SQ
Sbjct: 103 IVDIEYSELDYSVPLCSAQAALLKVHDAIVASLATAAENTKIDRDDFRECRLLVPSSQCS 162
Query: 132 CIIGKGGTKIKELR 145
+IGK G+ IK +R
Sbjct: 163 IVIGKSGSIIKNIR 176
>gi|125773159|ref|XP_001357838.1| GA30025, isoform A [Drosophila pseudoobscura pseudoobscura]
gi|54637571|gb|EAL26973.1| GA30025, isoform A [Drosophila pseudoobscura pseudoobscura]
Length = 570
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 15/135 (11%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTIFAE 71
G +++L+P+ +G++IGKGG IA L+ D A V + PG ER+ I
Sbjct: 62 GETTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGS 121
Query: 72 LENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAG 131
E + V++ + +D+IR+K D + D ++++V S AG
Sbjct: 122 TEAIMVVLDFI---MDKIREK-------PDLTTKIIDAESKQTQERDKQVKILVPNSTAG 171
Query: 132 CIIGKGGTKIKELRD 146
IIGKGG IK++++
Sbjct: 172 MIIGKGGAFIKQIKE 186
Score = 40.4 bits (93), Expect = 0.27, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG----PERILTIFAELENG 75
D ++++L+P+ AG +IGKGG+ I +++ D + V + P ER +TI + EN
Sbjct: 158 DKQVKILVPNSTAGMIIGKGGAFIKQIKEDSGSYVQISQKPKDVSLQERCITIIGDKENN 217
Query: 76 LKVIEEVLPALDEIRQ 91
+ +L + E Q
Sbjct: 218 KNACKMILSKIVEDPQ 233
>gi|393218460|gb|EJD03948.1| hypothetical protein FOMMEDRAFT_140050 [Fomitiporia mediterranea
MF3/22]
Length = 347
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 72/153 (47%), Gaps = 24/153 (15%)
Query: 3 FFIQQLSNFKRFRGGP--NDVELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPD 58
F+++ S RF GP + LR L+ ++ AG +IGKGG N+A LR++ KA V+
Sbjct: 19 FYLR--STSLRFCRGPIKETLTLRALVSTKDAGVIIGKGGKNVADLRDETGVKAGVS-KV 75
Query: 59 CPG-PERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKD 117
PG ER+LT+ ++E K ++ L D
Sbjct: 76 VPGVHERVLTVSGDVEKVAKAYRLIIAQLI----------------DASPPSPTTTSPPS 119
Query: 118 DYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
+ IRL++ + G IIG+GG KIK ++D A
Sbjct: 120 NTSIRLLISHNLMGTIIGRGGLKIKAIQDASGA 152
>gi|307196422|gb|EFN78011.1| Insulin-like growth factor 2 mRNA-binding protein 1 [Harpegnathos
saltator]
Length = 647
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 8/137 (5%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV--PDCPGP-ERILTIFAEL 72
G D LR+L+ S + G++IG+ GS I ++ +A V V D G E+ +TI+
Sbjct: 138 GRQTDFPLRILVQSDMVGAIIGRQGSTIRQITQVSRARVDVHRKDNVGSLEKAITIYGNP 197
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
+N +++L + + KG +G N G + + ++++ H + G
Sbjct: 198 DNCTNACKKILEVMQQEANNTNKGYD-----EGSNSDDHGAVNSYEITLKILAHNNLIGR 252
Query: 133 IIGKGGTKIKELRDTFD 149
IIGKGG IK + D
Sbjct: 253 IIGKGGNTIKRIMQDTD 269
Score = 35.4 bits (80), Expect = 8.3, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVP-----DCPGPERILTIFAELEN 74
++ L++L + + G +IGKGG+ I R+ D +TV + ERI+T+ +EN
Sbjct: 238 EITLKILAHNNLIGRIIGKGGNTIKRIMQDTDTKITVSSINDINSFNLERIITVKGTIEN 297
Query: 75 GLKVIEEVLPALDEIRQKY 93
K E ++ + ++RQ Y
Sbjct: 298 MSKA-ESMISS--KLRQSY 313
Score = 35.0 bits (79), Expect = 9.0, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 26/128 (20%)
Query: 25 LLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-------PDCPGPERILTIFAELENGLK 77
L IP+ G++IG GS+I + ASV + P ER +TI E+ K
Sbjct: 381 LYIPNNSVGAIIGTKGSHIRNIIRFSGASVKIAPLEQDKPAEQQTERKVTIVGSPESQWK 440
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKG 137
+ + E +GY V G I ++V +Q G IIGKG
Sbjct: 441 AQYLIFEKMRE---------------EGY----VSGTEDVRLTIEILVPSAQVGRIIGKG 481
Query: 138 GTKIKELR 145
G ++EL+
Sbjct: 482 GQNVRELQ 489
>gi|426249910|ref|XP_004018689.1| PREDICTED: poly(rC)-binding protein 4 [Ovis aries]
Length = 425
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 14/109 (12%)
Query: 42 NIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGED 101
+ R+R A +T+ + PERI TI + + LDE +
Sbjct: 61 TVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDE-----------DL 109
Query: 102 GGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
NGG V + +RL++ SQ G +IGK GTKIKE+R+T A
Sbjct: 110 CAAPANGGNVS---RPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGA 155
>gi|414870926|tpg|DAA49483.1| TPA: hypothetical protein ZEAMMB73_398324 [Zea mays]
Length = 541
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 18/144 (12%)
Query: 18 PNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PGP-ERILTIF------ 69
P + R+L P + GSV+G+GG + LR + KA + V D PG ER++ IF
Sbjct: 40 PIETIYRILCPVKKIGSVLGRGGDIVKALREETKAKIRVADSIPGADERVIIIFNYQNEP 99
Query: 70 ------AELEN--GLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDI 121
AE +N GL + A D + + + K E + N DD
Sbjct: 100 EPTDEAAEEKNSDGLGNFKSHCFAQDALLKIHDKIVSDEIHDEVANDE--KSESADDVTA 157
Query: 122 RLIVHQSQAGCIIGKGGTKIKELR 145
R++V +Q GC++GKGG+ I++LR
Sbjct: 158 RILVQGNQVGCLLGKGGSIIQQLR 181
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 30/143 (20%)
Query: 14 FRGGPN-------DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV----PDCPGP 62
+R GP + +R+L S + GSVIGK G+N+ R+ A + V D G
Sbjct: 279 YRSGPQYPVTETEEFSIRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASG- 337
Query: 63 ERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIR 122
ER++ I + N + E + PA++ + + K + K R
Sbjct: 338 ERLIIISS---NEIPA-EPISPAIEALILLHDKVSAPSE--------------KHHSSTR 379
Query: 123 LIVHQSQAGCIIGKGGTKIKELR 145
L+V S+ GCIIG+GG I ++R
Sbjct: 380 LVVPSSKVGCIIGEGGKVITDMR 402
>gi|358056167|dbj|GAA97907.1| hypothetical protein E5Q_04587 [Mixia osmundae IAM 14324]
Length = 531
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 43/129 (33%), Positives = 59/129 (45%), Gaps = 16/129 (12%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD-CPG-PERILTIFAELENGLKVIE 80
+R L+ SR AG VIG+ G N+A +R + V PG ER+LT+ + I
Sbjct: 145 MRALVSSREAGIVIGRQGKNVADIREKAQVKAGVSKLVPGVSERVLTVTGQ-------IS 197
Query: 81 EVLPALDEIRQKYGKGRGG--EDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
V A I Q G D Y G L +RL++ +Q G +IGK G
Sbjct: 198 GVARAFGLICQTIMDNSSGIPNDSPSTYTG-----LSGSTLTLRLLISSAQMGGVIGKAG 252
Query: 139 TKIKELRDT 147
TKIK ++ T
Sbjct: 253 TKIKSIQQT 261
>gi|169775165|ref|XP_001822050.1| RNA-binding protein rnc1 [Aspergillus oryzae RIB40]
gi|238496215|ref|XP_002379343.1| KH domain RNA-binding protein [Aspergillus flavus NRRL3357]
gi|83769913|dbj|BAE60048.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220694223|gb|EED50567.1| KH domain RNA-binding protein [Aspergillus flavus NRRL3357]
gi|391872927|gb|EIT82002.1| polyC-binding proteins alphaCP-1 [Aspergillus oryzae 3.042]
Length = 357
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 22/131 (16%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPG-PERILTIFAELENGLK 77
+ LR ++ S+ AG +IGK G N+A LR++ KA V+ PG +R+LT+ L+ +
Sbjct: 43 LTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVS-KVVPGVHDRVLTVTGPLQGTAR 101
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCIIG 135
V L E G G+GG+ ++ + +RL++ +Q G IIG
Sbjct: 102 AYALVAKGLLE----------------GAPQMGMGGVVSNNGTHPVRLLISHNQMGTIIG 145
Query: 136 KGGTKIKELRD 146
+ G KIK ++D
Sbjct: 146 RSGLKIKHIQD 156
>gi|353237678|emb|CCA69645.1| related to PBP2-PAB1 binding protein [Piriformospora indica DSM
11827]
Length = 406
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 26/137 (18%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PG-PERILTIFAELENGL 76
+ + +R LI ++ A +IGKGGS++ +R A V V + PG PERIL +
Sbjct: 105 STIHMRCLIVTQDASIIIGKGGSHVNEIREKSNAKVMVSESIPGNPERILNVSG------ 158
Query: 77 KVIEEVLPALDEIRQKYG---KGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCI 133
ALD + + +G + E G G I+ I+ S+ G +
Sbjct: 159 --------ALDAVSKAFGLIVRRINDEPMGPSVPGSRA-------VTIKFIIPHSRMGSV 203
Query: 134 IGKGGTKIKELRDTFDA 150
IGKGG KIKE+++ A
Sbjct: 204 IGKGGAKIKEIQEASGA 220
>gi|325087770|gb|EGC41080.1| KH domain RNA-binding protein [Ajellomyces capsulatus H88]
Length = 321
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 16/130 (12%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGL 76
+ + LR ++ S+ AG +IGK G N+A LR++ KA V+ +R+LT+ L+
Sbjct: 42 STLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTGPLQGTA 101
Query: 77 KVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGK 136
K V L E + G GG N G + +RL++ +Q G IIG+
Sbjct: 102 KAYAIVAKGLLEGAPQLGM------GGVASNNG--------THPVRLLISHNQMGTIIGR 147
Query: 137 GGTKIKELRD 146
G KIK ++D
Sbjct: 148 QGLKIKYIQD 157
>gi|256078989|ref|XP_002575774.1| far upstream (fuse) binding protein [Schistosoma mansoni]
gi|360043995|emb|CCD81541.1| putative far upstream (fuse) binding protein [Schistosoma mansoni]
Length = 530
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 12/130 (9%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGL 76
G V IP R G VIGKGG I +L+ND + V + PER +T+ +
Sbjct: 95 GSRVVTTETAIPDRYVGLVIGKGGEQITQLQNDTQCKVQISQAGTPERTVTLTGTPQQ-- 152
Query: 77 KVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGK 136
I+ + +I ++ GK G YN G I ++V +AG +IGK
Sbjct: 153 --IDHAKQMIGDIIERAGK--NGTPTTPAYNSTG------SITTIEMMVPGLKAGLVIGK 202
Query: 137 GGTKIKELRD 146
G IK L++
Sbjct: 203 NGETIKNLQE 212
>gi|242019024|ref|XP_002429966.1| polyrC binding protein, putative [Pediculus humanus corporis]
gi|212515021|gb|EEB17228.1| polyrC binding protein, putative [Pediculus humanus corporis]
Length = 319
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 16/132 (12%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD------CPGPERILTIFAELENG 75
L++L+P AG++IGKGG IA+L+ D A + + C ER+ + +E
Sbjct: 69 HLKILVPCIAAGAIIGKGGETIAQLQKDTGARMKMSKANDFYPC-TTERVCLVTGSVEAI 127
Query: 76 LKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKD-DYDIRLIVHQSQAGCII 134
+ V+ + +D+I++K + D + L D +++++ S AG II
Sbjct: 128 MAVMSFI---MDKIKEKPDLTSKAINTSDTES-----KLSADRSKQVKILIPNSTAGMII 179
Query: 135 GKGGTKIKELRD 146
GKGG IK++++
Sbjct: 180 GKGGNYIKQMKE 191
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG------PERILTIFAELENG 75
++++LIP+ AG +IGKGG+ I +++ + + + + ER +TI E+EN
Sbjct: 165 QVKILIPNSTAGMIIGKGGNYIKQMKEESGSYIQLSQKSNDASLQLQERCVTIIGEMENN 224
Query: 76 LKVIEEVLPALDEIRQ 91
K I ++L + E Q
Sbjct: 225 KKAILKLLAKVVEDPQ 240
>gi|357466759|ref|XP_003603664.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355492712|gb|AES73915.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 662
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 19/137 (13%)
Query: 13 RFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PGPERILTIFAE 71
R R P + RLL PS G++IGKGGS I L+ + + + V + PG E + I +
Sbjct: 304 RMRPPPEILTFRLLCPSESVGNLIGKGGSIIKMLQQETASEIKVIEAIPGSEDCIIIISG 363
Query: 72 LENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDI--RLIVHQSQ 129
+ I V A+ ++ + + L ++ + R+IV
Sbjct: 364 PAHPDDRISPVQEAIFRVQNRISRAM----------------LDSKEHSMLARVIVSSKH 407
Query: 130 AGCIIGKGGTKIKELRD 146
GC++GKGG+ I E+R+
Sbjct: 408 IGCLLGKGGSIIAEMRN 424
>gi|449524744|ref|XP_004169381.1| PREDICTED: poly(rC)-binding protein 3-like [Cucumis sativus]
Length = 224
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 18/143 (12%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CPGPERILTIF 69
K++ G P D RL++P GS+IG+ G I ++ + +A + V D P+R++ I
Sbjct: 72 KKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRVLDGAVGTPDRVVLIS 131
Query: 70 --AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQ 127
ELE+ L PA+D + + + + G + D IRL+V
Sbjct: 132 GKEELESPLS------PAMDAVIRVFKRVSGLSENEDEAKASFCS--------IRLLVAS 177
Query: 128 SQAGCIIGKGGTKIKELRDTFDA 150
+QA +IGK G+ IK ++++ A
Sbjct: 178 TQAINLIGKQGSLIKSIQESTGA 200
>gi|154275678|ref|XP_001538690.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150415130|gb|EDN10492.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|225556762|gb|EEH05050.1| KH domain RNA-binding protein [Ajellomyces capsulatus G186AR]
Length = 363
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 16/130 (12%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGL 76
+ + LR ++ S+ AG +IGK G N+A LR++ KA V+ +R+LT+ L+
Sbjct: 42 STLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTGPLQGTA 101
Query: 77 KVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGK 136
K V L E + G GG N G + +RL++ +Q G IIG+
Sbjct: 102 KAYAIVAKGLLEGAPQLGM------GGVASNNG--------THPVRLLISHNQMGTIIGR 147
Query: 137 GGTKIKELRD 146
G KIK ++D
Sbjct: 148 QGLKIKYIQD 157
>gi|223947189|gb|ACN27678.1| unknown [Zea mays]
gi|223950255|gb|ACN29211.1| unknown [Zea mays]
gi|414868821|tpg|DAA47378.1| TPA: KH domain containing protein [Zea mays]
Length = 508
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 10/137 (7%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--PERILTIF 69
K++ G P + R+L+P+ G+VIG+ G I ++ + +A + V + P PER + I
Sbjct: 98 KKWPGWPGESVFRILVPTTKVGAVIGRKGDFIKKMCEESRARIKVLEGPPAVPERAVMIS 157
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
A+ E E+ PA+D + + + + G + G RL+V SQ
Sbjct: 158 AKDEPD----TELPPAVDGLLRVHRRITDGLETETDQPQRATVNTGP----TRLLVPASQ 209
Query: 130 AGCIIGKGGTKIKELRD 146
AG +IGK G IK ++D
Sbjct: 210 AGSLIGKQGATIKSIQD 226
>gi|294464716|gb|ADE77865.1| unknown [Picea sitchensis]
Length = 348
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 28/138 (20%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PGP-ERILTIFAE--LENG 75
++ R+L P++ GSVIG+ GS I L++D A + + D PG ERI+ I A LE+
Sbjct: 21 ELVFRILCPNKKIGSVIGRAGSIIKSLQDDIGAKIKITDAVPGSDERIIIISANEVLEDN 80
Query: 76 LKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD---YDIRLIVHQSQAGC 132
L +E AL I+ + + LG D +L++ +Q GC
Sbjct: 81 LSPAQE---ALLHIQSQ------------------IVDLGPDKDGVITTKLLIPSNQTGC 119
Query: 133 IIGKGGTKIKELRDTFDA 150
++GKGG I E+R A
Sbjct: 120 LLGKGGAIISEMRKQTRA 137
>gi|255574127|ref|XP_002527979.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223532605|gb|EEF34391.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 416
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 10/141 (7%)
Query: 13 RFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--PERILTIFA 70
++ G P D RL++P GS+IG+ G I ++ + +A + + D P +RI+ I
Sbjct: 19 KWPGWPGDNVYRLIVPVAKVGSIIGRKGELIKKMCVETRARIRILDGPPSISDRIVLI-- 76
Query: 71 ELENGLKVIEEVL-PALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
+G + E L PA+D + + + + G G G V G ++L+V SQ
Sbjct: 77 ---SGKEEPEAALSPAMDAVLRVFKRVSGLSAGEADAMGSAVAGAAFS--SVKLLVASSQ 131
Query: 130 AGCIIGKGGTKIKELRDTFDA 150
A +IGK G+ IK ++++ A
Sbjct: 132 AINLIGKQGSTIKSIQESTAA 152
>gi|351694581|gb|EHA97499.1| Heterogeneous nuclear ribonucleoprotein K [Heterocephalus glaber]
Length = 96
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
Query: 29 SRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDE 88
S+ AG VI KGG NI L D+KASV++ D GPE I A++E +++++V+P L+E
Sbjct: 22 SKNAGGVIRKGGKNIKALHTDYKASVSLQDSSGPE---CISADIETTGEILKKVIPTLEE 78
>gi|297807547|ref|XP_002871657.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297317494|gb|EFH47916.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
Length = 544
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 23/138 (16%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASV----TVPDCPGPERILTIFAELE- 73
+D R L P + GSVIG+GG + +LR D ++ + +P C ER++TI++ +
Sbjct: 42 DDTVFRYLCPVKKIGSVIGRGGEIVKQLRMDTRSKIRIGEAIPGC--DERVITIYSPSDE 99
Query: 74 -----NGLKVIEEVLPALDEIRQK-YGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQ 127
+G KV+ AL I + ED + G+ +L+V
Sbjct: 100 TNAFGDGEKVLSPAQDALFRIHDRVVADDAQSEDSSE----------GEQQVTAKLLVPS 149
Query: 128 SQAGCIIGKGGTKIKELR 145
Q GCI+G+GG ++ +R
Sbjct: 150 DQIGCILGRGGQIVQNIR 167
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 24/142 (16%)
Query: 11 FKRFRGGPNDVE--LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CPGPERIL 66
++ R P E +RL+ P SVIGKGG+ I +LR + +A++ V G + ++
Sbjct: 268 YQPPRNDPPATEFFIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLI 327
Query: 67 TIFAE--LENGLK-VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRL 123
TI A E+ IE V+ + +K + + G V + RL
Sbjct: 328 TISAREVFEDAYSPTIEAVMRLQPKCSEKVER-----------DSGLVS------FTTRL 370
Query: 124 IVHQSQAGCIIGKGGTKIKELR 145
+V S+ GCI+GKGG I E+R
Sbjct: 371 LVPSSRIGCILGKGGAIITEMR 392
>gi|225682425|gb|EEH20709.1| KH domain RNA-binding protein [Paracoccidioides brasiliensis Pb03]
Length = 364
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 20/129 (15%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGLKVIE 80
LR ++ S+ AG +IGK G N+A LR++ KA V+ +R+LT+ L+ K
Sbjct: 47 LRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTGPLQGAAKAYA 106
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCIIGKGG 138
V +L E G G+GG+ ++ + +RL++ +Q G IIG+ G
Sbjct: 107 IVAKSLLE----------------GAPQLGMGGVVSNNGTHPVRLLISHNQMGTIIGRQG 150
Query: 139 TKIKELRDT 147
KIK ++D
Sbjct: 151 LKIKYIQDA 159
>gi|240281620|gb|EER45123.1| KH domain RNA-binding protein [Ajellomyces capsulatus H143]
Length = 275
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 16/130 (12%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGL 76
+ + LR ++ S+ AG +IGK G N+A LR++ KA V+ +R+LT+ L+
Sbjct: 42 STLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTGPLQGTA 101
Query: 77 KVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGK 136
K V L E + G GG N G + +RL++ +Q G IIG+
Sbjct: 102 KAYAIVAKGLLEGAPQLGM------GGVASNNG--------THPVRLLISHNQMGTIIGR 147
Query: 137 GGTKIKELRD 146
G KIK ++D
Sbjct: 148 QGLKIKYIQD 157
>gi|226289821|gb|EEH45305.1| KH domain RNA-binding protein [Paracoccidioides brasiliensis Pb18]
Length = 364
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 20/129 (15%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGLKVIE 80
LR ++ S+ AG +IGK G N+A LR++ KA V+ +R+LT+ L+ K
Sbjct: 47 LRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTGPLQGAAKAYA 106
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCIIGKGG 138
V +L E G G+GG+ ++ + +RL++ +Q G IIG+ G
Sbjct: 107 IVAKSLLE----------------GAPQLGMGGVVSNNGTHPVRLLISHNQMGTIIGRQG 150
Query: 139 TKIKELRDT 147
KIK ++D
Sbjct: 151 LKIKYIQDA 159
>gi|171686672|ref|XP_001908277.1| hypothetical protein [Podospora anserina S mat+]
gi|170943297|emb|CAP68950.1| unnamed protein product [Podospora anserina S mat+]
Length = 386
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 22/133 (16%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGP-ERILTIFAELENG 75
+ LR ++ S+ AG +IGK G N+A LR++ KA V+ PG +R+LTI E
Sbjct: 56 TQMTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVS-KVVPGVYDRVLTITGGCEAI 114
Query: 76 LKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGL--GKDDYDIRLIVHQSQAGCI 133
K +V AL E G G+GG+ + I+L++ +Q G +
Sbjct: 115 SKAYAKVASALME----------------GAPAMGMGGVVAANGTHPIKLLISHNQMGTV 158
Query: 134 IGKGGTKIKELRD 146
IG+ G KIK ++D
Sbjct: 159 IGRQGLKIKHIQD 171
>gi|225445949|ref|XP_002264417.1| PREDICTED: KH domain-containing protein At4g18375 isoform 1 [Vitis
vinifera]
Length = 466
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 45/143 (31%), Positives = 73/143 (51%), Gaps = 12/143 (8%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CPGPERILTIF 69
K++ G P D RL++P GS+IG+ G I ++ + +A + V D +RI+ I
Sbjct: 69 KKWPGWPGDCVFRLIVPVLKVGSIIGRKGELIKKMCEETRARIRVLDGAVGTSDRIVLI- 127
Query: 70 AELENGLKVIEEVL-PALDEIRQKYGKGRG-GEDGGDGYNGGGVGGLGKDDYDIRLIVHQ 127
+G + E L PA+D + + + + G E GD G G G IRL+V
Sbjct: 128 ----SGREEPEAPLSPAMDAVIRVFKRVTGLSESEGD---GKAYGAAGVAFCSIRLLVAS 180
Query: 128 SQAGCIIGKGGTKIKELRDTFDA 150
+QA +IGK G+ IK ++++ A
Sbjct: 181 TQAINLIGKQGSLIKSIQESTGA 203
>gi|391326103|ref|XP_003737564.1| PREDICTED: RNA-binding protein Nova-1-like [Metaseiulus
occidentalis]
Length = 430
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 69/131 (52%), Gaps = 16/131 (12%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTIFAELENGL 76
++L+P+ AG++IGKGG IA+++ D A V + PG ER+ I +E +
Sbjct: 26 HFKILVPAVAAGAIIGKGGETIAQVQKDCGARVKMSKSNDFYPGTTERVCLITGTVEGIV 85
Query: 77 KVIEEVLPALDEIRQKY-GKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIG 135
K+ + +D+I++K R G D + + ++++V S AG IIG
Sbjct: 86 KIHNFI---MDKIKEKPDPNSRTGVDFDHKQP-------AEREKQVKILVPNSTAGMIIG 135
Query: 136 KGGTKIKELRD 146
KGG+ IK++++
Sbjct: 136 KGGSYIKQIKE 146
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVP----DCPGPERILTIFAELENGLK 77
++++L+P+ AG +IGKGGS I +++ D + + D ER +TI ELE K
Sbjct: 120 QVKILVPNSTAGMIIGKGGSYIKQIKEDSNVYIQLSQKSRDHALAERSITIIGELEPTRK 179
Query: 78 VIEEVLPALDE 88
++ VL + E
Sbjct: 180 AVDLVLAKIVE 190
>gi|393909303|gb|EJD75396.1| hypothetical protein LOAG_17442 [Loa loa]
Length = 585
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 44/149 (29%), Positives = 77/149 (51%), Gaps = 28/149 (18%)
Query: 15 RGGP------------NDVELRLLIPSRVAGSVIGKGGSNIARLRND----FKASVTVPD 58
RGGP N V++++LIPS G++IGKGG + L+++ + S
Sbjct: 38 RGGPATKKAHVSDTEDNIVQVKVLIPSAAVGALIGKGGETMRNLKSESGCRLQMSKNQEV 97
Query: 59 CPGP-ERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKD 117
PG ERI + ++ + LKV + + L++IR+K D ++ G+ +
Sbjct: 98 YPGTNERICLVKGKIASVLKVSDVI---LEKIREKVDN----NTPSDIFDHKGM----ER 146
Query: 118 DYDIRLIVHQSQAGCIIGKGGTKIKELRD 146
+++L+V + AG +IGK G +IKE+R+
Sbjct: 147 KNEMKLVVPNTSAGMVIGKSGARIKEIRE 175
Score = 36.2 bits (82), Expect = 4.8, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 12/73 (16%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP-------ERILTIFAELEN 74
E++L++P+ AG VIGK G+ I +R A++ V G ERI+TI AE +
Sbjct: 149 EMKLVVPNTSAGMVIGKSGARIKEIREQTGANIQVYPKAGSQEAKVSQERIITIAAEQDE 208
Query: 75 GL-----KVIEEV 82
L +V+E+V
Sbjct: 209 VLMDALQRVLEKV 221
>gi|242785360|ref|XP_002480578.1| KH domain RNA-binding protein [Talaromyces stipitatus ATCC 10500]
gi|218720725|gb|EED20144.1| KH domain RNA-binding protein [Talaromyces stipitatus ATCC 10500]
Length = 367
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 20/129 (15%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGLKVIE 80
LR ++ S+ AG +IGK G N+A LR++ KA V+ +R+LT+ L+ +
Sbjct: 50 LRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTGALQGCARAYS 109
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCIIGKGG 138
V L E G G+GG+ +++ + IRL++ +Q G IIG+ G
Sbjct: 110 IVAKGLLE----------------GAPQVGMGGVVQNNGTHPIRLLISHNQMGTIIGRQG 153
Query: 139 TKIKELRDT 147
KIK ++D
Sbjct: 154 LKIKHIQDA 162
>gi|395333911|gb|EJF66288.1| hypothetical protein DICSQDRAFT_159257 [Dichomitus squalens
LYAD-421 SS1]
Length = 405
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 19/133 (14%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PG-PERILTIFAELENGLK 77
++ +R LI ++ A +IGKGGS++ +R A V V + PG PERIL + L+ K
Sbjct: 100 NIHMRCLIVTQDASIIIGKGGSHVNEIREKSGARVMVSESIPGNPERILNVSGPLDAVSK 159
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKG 137
++ +++ + ++ V G I+ ++ S+ G +IGKG
Sbjct: 160 AFGLIVRRIND---------------EPFDKPSV--PGSRAVTIKFMIPNSRMGSVIGKG 202
Query: 138 GTKIKELRDTFDA 150
GTKIKE++D A
Sbjct: 203 GTKIKEIQDASGA 215
>gi|295660901|ref|XP_002791006.1| KH domain RNA-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280933|gb|EEH36499.1| KH domain RNA-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 364
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 20/128 (15%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGLKVIE 80
LR ++ S+ AG +IGK G N+A LR++ KA V+ +R+LT+ L+ K
Sbjct: 47 LRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTGPLQGAAKAYA 106
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCIIGKGG 138
V +L E G G+GG+ ++ + +RL++ +Q G IIG+ G
Sbjct: 107 IVAKSLLE----------------GAPQLGMGGVVSNNGTHPVRLLISHNQMGTIIGRQG 150
Query: 139 TKIKELRD 146
KIK ++D
Sbjct: 151 LKIKYIQD 158
>gi|449463577|ref|XP_004149510.1| PREDICTED: LOW QUALITY PROTEIN: poly(rC)-binding protein 3-like
[Cucumis sativus]
Length = 468
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 18/143 (12%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CPGPERILTIF 69
K++ G P D RL++P GS+IG+ G I ++ + +A + V D P+R++ I
Sbjct: 72 KKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRVLDGAVGTPDRVVLIS 131
Query: 70 A--ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQ 127
ELE+ L PA+D + + + + G + D IRL+V
Sbjct: 132 GKEELESPLS------PAMDAVIRVFKRVSGLSENEDEAKASFC--------SIRLLVAS 177
Query: 128 SQAGCIIGKGGTKIKELRDTFDA 150
+QA +IGK G+ IK ++++ A
Sbjct: 178 TQAINLIGKQGSLIKSIQESTGA 200
>gi|70989127|ref|XP_749413.1| KH domain RNA-binding protein [Aspergillus fumigatus Af293]
gi|66847044|gb|EAL87375.1| KH domain RNA-binding protein [Aspergillus fumigatus Af293]
gi|159128828|gb|EDP53942.1| KH domain RNA-binding protein [Aspergillus fumigatus A1163]
Length = 355
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 22/131 (16%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPG-PERILTIFAELENGLK 77
+ LR ++ S+ AG +IGK G N+A LR++ KA V+ PG +R+LT+ L+ +
Sbjct: 38 LTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVS-KVVPGVHDRVLTVTGPLQGTAR 96
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCIIG 135
V L E G G+GG+ ++ + +RL++ +Q G IIG
Sbjct: 97 AYALVAKGLLE----------------GAPQMGMGGIVNNNGTHPVRLLISHNQMGTIIG 140
Query: 136 KGGTKIKELRD 146
+ G KIK ++D
Sbjct: 141 RQGLKIKHIQD 151
>gi|414868822|tpg|DAA47379.1| TPA: hypothetical protein ZEAMMB73_380288 [Zea mays]
Length = 499
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 10/137 (7%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--PERILTIF 69
K++ G P + R+L+P+ G+VIG+ G I ++ + +A + V + P PER + I
Sbjct: 98 KKWPGWPGESVFRILVPTTKVGAVIGRKGDFIKKMCEESRARIKVLEGPPAVPERAVMIS 157
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
A+ E E+ PA+D + + + + G + G RL+V SQ
Sbjct: 158 AKDEPD----TELPPAVDGLLRVHRRITDGLETETDQPQRATVNTGP----TRLLVPASQ 209
Query: 130 AGCIIGKGGTKIKELRD 146
AG +IGK G IK ++D
Sbjct: 210 AGSLIGKQGATIKSIQD 226
>gi|321468687|gb|EFX79671.1| hypothetical protein DAPPUDRAFT_225024 [Daphnia pulex]
Length = 573
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 14/135 (10%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTIFAE 71
G + L++L+PS AG++IGKGG IA+++ + A + + PG ER+ I
Sbjct: 52 GDGSIYLKVLVPSVAAGAIIGKGGETIAQVQKEVNARIKMSKANDFYPGTTERVCLIKGT 111
Query: 72 LENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAG 131
E+ + ++ + ++IR K D + D ++++V S AG
Sbjct: 112 TESVMSMLTFI---CEKIRDKPDPNAKPAMDFDSKTP------AERDKQVKILVPNSTAG 162
Query: 132 CIIGKGGTKIKELRD 146
IIGKGG+ IK++++
Sbjct: 163 MIIGKGGSFIKQIKE 177
>gi|119498177|ref|XP_001265846.1| KH domain RNA-binding protein [Neosartorya fischeri NRRL 181]
gi|119414010|gb|EAW23949.1| KH domain RNA-binding protein [Neosartorya fischeri NRRL 181]
Length = 360
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 22/131 (16%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPG-PERILTIFAELENGLK 77
+ LR ++ S+ AG +IGK G N+A LR++ KA V+ PG +R+LT+ L+ +
Sbjct: 43 LTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVS-KVVPGVHDRVLTVTGPLQGTAR 101
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCIIG 135
V L E G G+GG+ ++ + +RL++ +Q G IIG
Sbjct: 102 AYALVAKGLLE----------------GAPQMGMGGIVNNNGTHPVRLLISHNQMGTIIG 145
Query: 136 KGGTKIKELRD 146
+ G KIK ++D
Sbjct: 146 RQGLKIKHIQD 156
>gi|121710626|ref|XP_001272929.1| KH domain RNA-binding protein [Aspergillus clavatus NRRL 1]
gi|119401079|gb|EAW11503.1| KH domain RNA-binding protein [Aspergillus clavatus NRRL 1]
Length = 362
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 22/131 (16%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPG-PERILTIFAELENGLK 77
+ LR ++ S+ AG +IGK G N+A LR++ KA V+ PG +R+LT+ L+ +
Sbjct: 44 LTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVS-KVVPGVHDRVLTVTGPLQGTAR 102
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCIIG 135
V L E G G+GG+ ++ + +RL++ +Q G IIG
Sbjct: 103 AYALVAKGLLE----------------GAPQMGMGGIVNNNGTHPVRLLISHNQMGTIIG 146
Query: 136 KGGTKIKELRD 146
+ G KIK ++D
Sbjct: 147 RQGLKIKHIQD 157
>gi|258566349|ref|XP_002583919.1| hypothetical protein UREG_06886 [Uncinocarpus reesii 1704]
gi|237907620|gb|EEP82021.1| hypothetical protein UREG_06886 [Uncinocarpus reesii 1704]
Length = 366
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 20/131 (15%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGLKV 78
+ LR ++ S+ AG +IGK G N+A LR++ KA V+ +R+LT+ L+ K
Sbjct: 48 LTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTGPLQGTAKA 107
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCIIGK 136
V +L E G G+GG+ +++ + +RL++ +Q G IIG+
Sbjct: 108 YGMVAKSLLE----------------GAPQVGMGGIIQNNGTHPVRLLISHNQMGTIIGR 151
Query: 137 GGTKIKELRDT 147
G KIK ++D
Sbjct: 152 QGLKIKYIQDA 162
>gi|147794489|emb|CAN67081.1| hypothetical protein VITISV_007074 [Vitis vinifera]
Length = 534
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 17/150 (11%)
Query: 3 FFIQQLSNFKRFRGGPNDVE---LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC 59
IQQL +R GG + +E R+L+P++ GS+IG+ G I ++ + +A + + D
Sbjct: 109 MMIQQLEVVRR--GGLDGLERVFFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDG 166
Query: 60 P--GPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKD 117
P ER + + A+ E + PA+D + + + + G +G + G GK
Sbjct: 167 PPGTAERAVMVSAKEEPD----SSLPPAMDGLLKVHKRIVDGLEGDSSHMPPG----GK- 217
Query: 118 DYDIRLIVHQSQAGCIIGKGGTKIKELRDT 147
RL+V SQAG +IGK G +K +++
Sbjct: 218 -VSTRLLVAASQAGSLIGKQGGTVKSIQEA 246
>gi|346971553|gb|EGY15005.1| Poly(rC)-binding protein [Verticillium dahliae VdLs.17]
Length = 514
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 42/128 (32%), Positives = 65/128 (50%), Gaps = 20/128 (15%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGLKVIE 80
LR ++ S+ AG +IGKGG N+A LR++ KA V+ +R+LTI E +
Sbjct: 49 LRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVHDRVLTITGGCEAISRAYA 108
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCIIGKGG 138
V AL E G G+GG+ + + + I+L++ +Q G IIG+ G
Sbjct: 109 IVAQALLE----------------GAPSLGMGGVPQSNGTHPIKLLISHNQMGTIIGRQG 152
Query: 139 TKIKELRD 146
KIK ++D
Sbjct: 153 LKIKHIQD 160
>gi|328787572|ref|XP_393878.3| PREDICTED: IGF-II mRNA-binding protein [Apis mellifera]
gi|380027404|ref|XP_003697415.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 1-like
[Apis florea]
Length = 626
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 24/137 (17%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV--PDCPGP-ERILTIFAEL 72
G D LR+L+ S + G++IG+ GS I ++ +A V V D G E+ +TI+
Sbjct: 182 GRQADFPLRILVQSEMVGAIIGRQGSTIRQITQMTRARVDVHRKDSLGAAEKAITIYGNP 241
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
EN ++++ E+ Q+ + Y GL K + +R++ H + G
Sbjct: 242 ENCTNACKKIM----EVTQQ-----------EAY------GLSKGEISLRILAHNNLIGR 280
Query: 133 IIGKGGTKIKELRDTFD 149
IIGKGGT IK++ D
Sbjct: 281 IIGKGGTTIKKIMQDTD 297
>gi|213410260|ref|XP_002175900.1| RNA-binding protein that suppresses calcineurin deletion Rnc1
[Schizosaccharomyces japonicus yFS275]
gi|212003947|gb|EEB09607.1| RNA-binding protein that suppresses calcineurin deletion Rnc1
[Schizosaccharomyces japonicus yFS275]
Length = 381
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 21/130 (16%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRN--DFKASVT--VPDCPGPERILTIFAELENGL 76
+ LR L+ +R AG +IGK G N+A LR+ + KA +T VP+ +R+LTI LEN +
Sbjct: 86 LTLRALLSTREAGIIIGKSGKNVAELRSTTNVKAGITKAVPNV--HDRVLTISGSLENVV 143
Query: 77 KVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGK 136
+ ++ + N G +RL++ S G IIG+
Sbjct: 144 RAYRFIIDIF---------------AKNSTNANGTPVDPHAPRKLRLLIAHSLMGSIIGR 188
Query: 137 GGTKIKELRD 146
G +IK ++D
Sbjct: 189 NGLRIKLIQD 198
>gi|171687621|ref|XP_001908751.1| hypothetical protein [Podospora anserina S mat+]
gi|170943772|emb|CAP69424.1| unnamed protein product [Podospora anserina S mat+]
Length = 500
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 29/137 (21%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGLKV 78
+ +R +I S A ++IGKGG N++++R A TV D ERILT+ ++ K
Sbjct: 135 IHIRAVISSPEAATIIGKGGENVSKIRQSSGAKCTVSDYQKGAVERILTVSGVVDAAAKA 194
Query: 79 IEEVLPALD-----EIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCI 133
++ L+ E ++ K Y +RL++ G I
Sbjct: 195 FGLIIRTLNNEPLSEPSNQHSK----------------------TYPLRLLIPHVLIGSI 232
Query: 134 IGKGGTKIKELRDTFDA 150
IGKGG++IKE+++ A
Sbjct: 233 IGKGGSRIKEIQEASGA 249
>gi|67536752|ref|XP_662150.1| hypothetical protein AN4546.2 [Aspergillus nidulans FGSC A4]
gi|40741699|gb|EAA60889.1| hypothetical protein AN4546.2 [Aspergillus nidulans FGSC A4]
gi|259482624|tpe|CBF77283.1| TPA: KH domain RNA-binding protein (AFU_orthologue; AFUA_2G02780)
[Aspergillus nidulans FGSC A4]
Length = 542
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 62/128 (48%), Gaps = 20/128 (15%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD-CPG-PERILTIFAELENGLKVIE 80
LR ++ S+ AG +IGK G N+A LR++ V PG +R+LT+ L +
Sbjct: 229 LRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVPGVHDRVLTVTGALSGTARAYA 288
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCIIGKGG 138
V L E G G+GG+ ++ + IRL++ +Q G IIG+ G
Sbjct: 289 LVAKGLLE----------------GAPQMGMGGIVSNNGTHPIRLLISHNQMGTIIGRQG 332
Query: 139 TKIKELRD 146
KIK ++D
Sbjct: 333 LKIKHIQD 340
>gi|449546975|gb|EMD37943.1| hypothetical protein CERSUDRAFT_82176 [Ceriporiopsis subvermispora
B]
Length = 433
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 19/133 (14%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PG-PERILTIFAELENGLK 77
++ +R LI ++ A +IGKGGS++ +R A V V + PG PERIL + L+ K
Sbjct: 111 NIHMRCLIVTQDASIIIGKGGSHVNEIREQSGARVVVSESIPGNPERILNVSGPLDAVSK 170
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKG 137
++ +++ + ++ V G I+ ++ S+ G +IGKG
Sbjct: 171 AFGLIVRRIND---------------EPFDKPSVPG--SRAVTIKFMIPNSRMGSVIGKG 213
Query: 138 GTKIKELRDTFDA 150
GTKIKE++D A
Sbjct: 214 GTKIKEIQDASGA 226
>gi|358334721|dbj|GAA27863.2| RNA-binding protein Nova [Clonorchis sinensis]
Length = 759
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 26/138 (18%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD----CPG-PERILTIFAELE 73
++V L++LIPS AG+VIGK G I +++ D V + PG ER+ I +E
Sbjct: 36 DNVHLKVLIPSIAAGAVIGKYGEAIGKIQKDTNTKVKISKQDEFYPGTTERVCLIVGSME 95
Query: 74 NGLKV----IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDY-DIRLIVHQS 128
+ V ++ +L D +GR L + + ++++V S
Sbjct: 96 GVMSVHNYIMDRILEKPDPNPHATCEGR----------------LNVERHKQVKILVPNS 139
Query: 129 QAGCIIGKGGTKIKELRD 146
AG +IGKGG+ I+E+++
Sbjct: 140 TAGMVIGKGGSYIQEIKE 157
>gi|242039239|ref|XP_002467014.1| hypothetical protein SORBIDRAFT_01g018300 [Sorghum bicolor]
gi|241920868|gb|EER94012.1| hypothetical protein SORBIDRAFT_01g018300 [Sorghum bicolor]
Length = 542
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 20/145 (13%)
Query: 18 PNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD-CPGP-ERILTIF------ 69
P + R+L P + GSV+G+GG + LR + KA + V D PG ER++ IF
Sbjct: 40 PVETIYRILCPVKKIGSVLGRGGDVVKALREETKAKIRVADPIPGADERVIIIFNYQNQP 99
Query: 70 --------AELENGLKVIEEVLPALDEIRQKYGKGRGGE-DGGDGYNGGGVGGLGKDDYD 120
+ +GL ++ A D + + + K E G + DD
Sbjct: 100 ELTDEAAETKFSDGLGNMKPHCFAQDALLKIHDKIVADEIHDGVAHEEKSESA---DDVT 156
Query: 121 IRLIVHQSQAGCIIGKGGTKIKELR 145
R++V +Q GC++GKGG+ I++LR
Sbjct: 157 ARILVQGNQVGCLLGKGGSIIQQLR 181
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 23/127 (18%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV----PDCPGPERILTIFAELENGLKV 78
+R+L S + GSVIGK G+N+ R+ A + V D G I+ E+ +
Sbjct: 296 IRILCASELIGSVIGKSGANVKRVEQQTGARIKVQEIDKDASGESLIIVSSKEVPS---- 351
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
E + PA++ + + K + K RL+V S+ GCI+G+GG
Sbjct: 352 -EPISPAIEALILLHDKVSAPSE--------------KRHSSTRLVVPSSKVGCILGEGG 396
Query: 139 TKIKELR 145
I E+R
Sbjct: 397 KVITEMR 403
>gi|354542879|emb|CCE39597.1| hypothetical protein CPAR2_600100 [Candida parapsilosis]
Length = 607
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 65/148 (43%), Gaps = 27/148 (18%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--PERIL 66
S+ + F P+ V R+ P + A +V+GKGG+ I LR + + + + PERI+
Sbjct: 200 SSLQDFESDPSYVSFRMYCPVKEASTVVGKGGAKINHLREKAQVKIQISENLKDVPERII 259
Query: 67 TIFAELENGLK----VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIR 122
T+ EN K ++ +L GE + N L Y+++
Sbjct: 260 TVKGTAENVAKAFGLIVRTIL---------------GEPEDEPAN------LNSQQYNLK 298
Query: 123 LIVHQSQAGCIIGKGGTKIKELRDTFDA 150
L++ G IIGK G K +E+ + A
Sbjct: 299 LLIPNVIIGHIIGKQGLKFREIEENSAA 326
>gi|407924223|gb|EKG17277.1| K-like protein [Macrophomina phaseolina MS6]
Length = 357
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 20/130 (15%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD-CPG-PERILTIFAELENGLKV 78
+ LR ++ S+ AG +IGK G N+A LR++ V PG +R+LT+ L K
Sbjct: 45 LTLRAIVSSKEAGVIIGKAGQNVANLRDETGVRAGVSKVVPGVHDRVLTVTGALSGISKA 104
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGL--GKDDYDIRLIVHQSQAGCIIGK 136
V L E G G+GG+ + +RL++ +Q G IIG+
Sbjct: 105 YHLVAKGLLE----------------GAPSVGMGGVINTSGTHPVRLLISHNQMGTIIGR 148
Query: 137 GGTKIKELRD 146
G KIK+++D
Sbjct: 149 AGLKIKQIQD 158
>gi|395512937|ref|XP_003760689.1| PREDICTED: far upstream element-binding protein 2 [Sarcophilus
harrisii]
Length = 777
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 182 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 237
Query: 85 ALDEIRQKYGKGRGGEDGG--DGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 238 MLDDI---VSRGRGGPPGQFHDNSNGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 288
Query: 143 ELRD 146
+L++
Sbjct: 289 QLQE 292
>gi|359386146|gb|AEV43362.1| poly C-binding protein [Citrus sinensis]
Length = 569
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 14/142 (9%)
Query: 18 PNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PGP-ERILTIFAELENG 75
P D R+L PSR G VIGK G+ + LR + +A +TV D PG ER++ I++
Sbjct: 44 PADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKI 103
Query: 76 LKVIEEVLPALDEIRQKYGKGR-GGEDGGDGYNGGGV-----GGLGKDDYD------IRL 123
K + + E +++ + +D + + GG+ DD + RL
Sbjct: 104 AKTQNKDDDSAAETKKESMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARL 163
Query: 124 IVHQSQAGCIIGKGGTKIKELR 145
+V + GC++GK G I+ LR
Sbjct: 164 LVPNNMVGCLLGKRGDVIQRLR 185
>gi|359322253|ref|XP_542140.4| PREDICTED: LOW QUALITY PROTEIN: far upstream element-binding
protein 2 [Canis lupus familiaris]
Length = 840
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 280 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 335
Query: 85 ALDEIRQKYGKGRGGEDGG--DGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 336 MLDDI---VSRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 386
Query: 143 ELRD 146
+L++
Sbjct: 387 QLQE 390
>gi|326517934|dbj|BAK07219.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 632
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 9/131 (6%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD-CPGPE-RILTIFAELENGLKV 78
V R+L P +V GSVIGKGG I +R A V V D PG + R++ ++ +++ +
Sbjct: 38 VVYRILCPDKVIGSVIGKGGKVINSIRQQTNAKVKVVDPYPGADKRVILVYCYVKHRDVM 97
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLG----KDDYDIRLIVHQSQAGCII 134
+ ++ D+ R+ ++ + VG L DD + ++V SQA +I
Sbjct: 98 LSDINADDDDDREPVC---AAQNALLKVHDAIVGALAVTDDSDDKEANILVPASQAASVI 154
Query: 135 GKGGTKIKELR 145
GK G+ IK+LR
Sbjct: 155 GKSGSVIKKLR 165
Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER------ILTIFAELEN 74
+ LRLL+P V G +IGKGGS I +RN KA + + P + ++ +F E++
Sbjct: 393 MHLRLLVPGNVIGCLIGKGGSIINDMRNKSKAIIHISKGTKPRKASSSDELVEVFGEVDK 452
Query: 75 GLKVIEEVLPAL--DEIRQKYGKGRGGEDG 102
+ +++ L D ++ G+ G+DG
Sbjct: 453 LRDALVQIVLRLREDVLKDSVGRQNSGKDG 482
>gi|357146815|ref|XP_003574121.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 777
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 23/148 (15%)
Query: 18 PNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PGPERILTIFAELENGL 76
P + R+L P + GSV+G+GG + LR + KA + V D PG E + I + ++
Sbjct: 43 PIETVYRILCPGKKIGSVLGRGGHIVKALREETKAKIRVADSIPGAEERVIIIFDYQDQS 102
Query: 77 KVIEEVLP----------------ALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYD 120
+ +E A D + + + K ED D G + + D
Sbjct: 103 EQTDEAAQNISNNDGSENMKLQCFAQDALLKIHDKISTHEDPHD----GAIHEKSETAAD 158
Query: 121 I--RLIVHQSQAGCIIGKGGTKIKELRD 146
+ R++V +Q GC++GKGG+ I++LR+
Sbjct: 159 VTARILVPGNQVGCLLGKGGSIIQQLRN 186
Score = 40.4 bits (93), Expect = 0.26, Method: Composition-based stats.
Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 23/130 (17%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV----PDCPGPERILTIFAELENG 75
+ +R+L S + G VIGK G+N+ ++ A + V D G ER++ + ++ G
Sbjct: 298 EFSVRILCASELIGPVIGKSGANVRQVEQQTGARILVQELDKDASG-ERLIVLSSKEIPG 356
Query: 76 LKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIG 135
+ V PA++ + + K + K RL+V S+ GCI+G
Sbjct: 357 ----DPVSPAIEALILLHSKVSASSE--------------KRHLITRLVVPSSKVGCILG 398
Query: 136 KGGTKIKELR 145
+GG I E+R
Sbjct: 399 EGGKVITEMR 408
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
DV R+L+P G ++GKGGS I +LRND A + +
Sbjct: 158 DVTARILVPGNQVGCLLGKGGSIIQQLRNDTGAGIRI 194
>gi|67523265|ref|XP_659693.1| hypothetical protein AN2089.2 [Aspergillus nidulans FGSC A4]
gi|40745765|gb|EAA64921.1| hypothetical protein AN2089.2 [Aspergillus nidulans FGSC A4]
Length = 745
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 19/144 (13%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERIL 66
S +R + N + +R +I S+ A +VIGKGG N++++R A TV D ERIL
Sbjct: 96 SEQQRPQDESNWIHIRAVISSQEAATVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERIL 155
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVH 126
T+ + K ++ L+ + + Y +RL++
Sbjct: 156 TVSGPQDAVAKAFGLIIRTLNN---------------EPLDAASTA--QSKTYPLRLLIP 198
Query: 127 QSQAGCIIGKGGTKIKELRDTFDA 150
G IIGKGGT+I+E++D A
Sbjct: 199 HILIGSIIGKGGTRIREIQDASGA 222
>gi|270009705|gb|EFA06153.1| hypothetical protein TcasGA2_TC008998 [Tribolium castaneum]
Length = 564
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 69/137 (50%), Gaps = 15/137 (10%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTIFA 70
GG ++L+PS AG++IGKGG IA+L+ + A V + PG ER+ I
Sbjct: 40 GGDGTYHFKVLVPSVAAGAIIGKGGETIAQLQKETGARVKMSKSHDFYPGTTERVCLITG 99
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
++ + V+ + + D+IR+K + + + D ++++V S A
Sbjct: 100 SVD-AIMVVADFIA--DKIREKPDLTKPLVETESKL-------MQDRDKQVKILVPNSTA 149
Query: 131 GCIIGKGGTKIKELRDT 147
G IIGK G IK++++T
Sbjct: 150 GMIIGKAGNYIKQIKET 166
>gi|261197389|ref|XP_002625097.1| KH domain RNA-binding protein [Ajellomyces dermatitidis SLH14081]
gi|239595727|gb|EEQ78308.1| KH domain RNA-binding protein [Ajellomyces dermatitidis SLH14081]
gi|239606718|gb|EEQ83705.1| KH domain RNA-binding protein [Ajellomyces dermatitidis ER-3]
gi|327358051|gb|EGE86908.1| KH domain RNA-binding protein [Ajellomyces dermatitidis ATCC 18188]
Length = 363
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 16/130 (12%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGL 76
+ + LR ++ S+ AG +IGK G N+A LR++ KA V+ +R+LT+ L+
Sbjct: 42 STLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTGPLQGTA 101
Query: 77 KVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGK 136
K V L E + G GG V G + +RL++ +Q G IIG+
Sbjct: 102 KAYAIVAKGLLEGAPQLGM------------GGVVSNTGT--HPVRLLISHNQMGTIIGR 147
Query: 137 GGTKIKELRD 146
G KIK ++D
Sbjct: 148 QGLKIKYIQD 157
>gi|389630232|ref|XP_003712769.1| hypothetical protein MGG_16887 [Magnaporthe oryzae 70-15]
gi|351645101|gb|EHA52962.1| hypothetical protein MGG_16887 [Magnaporthe oryzae 70-15]
gi|440469705|gb|ELQ38806.1| Poly(rC)-binding protein 3 [Magnaporthe oryzae Y34]
gi|440482607|gb|ELQ63080.1| Poly(rC)-binding protein 3 [Magnaporthe oryzae P131]
Length = 370
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 20/130 (15%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGLKV 78
+ +R ++ S+ AG +IGKGG N+A LR++ KA V+ +R+LTI E K
Sbjct: 46 LTVRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVHDRVLTITGGCEGISKA 105
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCIIGK 136
V AL E G G+GG+ ++ + I+L++ +Q G IIG+
Sbjct: 106 YAVVARALLE----------------GAPSMGMGGVVSNNGTHPIKLLISHNQMGTIIGR 149
Query: 137 GGTKIKELRD 146
G KIK ++D
Sbjct: 150 QGLKIKHIQD 159
>gi|349576607|dbj|GAA21778.1| K7_Pbp2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 413
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 20/131 (15%)
Query: 18 PNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--PERILTIFAELENG 75
P+DV LR+L + A ++G G+ I+R++++ A + + + PERI+ + ++
Sbjct: 64 PSDVHLRMLCLVKHASLIVGHKGATISRIKSETSARINISNNIRGVPERIVYVRGTCDDV 123
Query: 76 LKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIG 135
K ++ AL E G ED G+ + I L++ GCIIG
Sbjct: 124 AKAYGMIVRALLE-------EHGNEDNGEDI-----------EISINLLIPHHLMGCIIG 165
Query: 136 KGGTKIKELRD 146
K G++++E+ D
Sbjct: 166 KRGSRLREIED 176
>gi|340722697|ref|XP_003399740.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 1-like
isoform 1 [Bombus terrestris]
Length = 627
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 24/137 (17%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV--PDCPGP-ERILTIFAEL 72
G D LR+L+ S + G++IG+ GS I ++ +A V V D G E+ +TI+
Sbjct: 182 GRQADFPLRILVQSEMVGAIIGRQGSTIRQITQMTRARVDVHRKDSLGAAEKAITIYGNP 241
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
EN ++++ E+ Q+ + Y GL K + +R++ H + G
Sbjct: 242 ENCTNACKKIM----EVTQQ-----------EAY------GLSKGEISLRILAHNNLIGR 280
Query: 133 IIGKGGTKIKELRDTFD 149
IIGKGGT IK++ D
Sbjct: 281 IIGKGGTTIKKIMQDTD 297
>gi|356568682|ref|XP_003552539.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 543
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PG-PERILTIFAELENGL 76
+D R L P R GSVIG+GG + +LR D KA + + D PG ER++TI + E
Sbjct: 42 DDTVFRYLCPVRKIGSVIGRGGDIVKQLRADTKAKIRIGDALPGCDERVVTIHSSSEETN 101
Query: 77 KVIEE---VLPALD---EIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
E V PA D + Q+ ED D N +L+V Q
Sbjct: 102 HFDETGDLVSPAQDALFRVHQRVIAEDAREDEDDERN----------HVTAKLLVPSDQI 151
Query: 131 GCIIGKGGTKIKELR 145
GC+IGKGG ++ +R
Sbjct: 152 GCVIGKGGQIVQNIR 166
>gi|290878251|emb|CBK39310.1| Pbp2p [Saccharomyces cerevisiae EC1118]
Length = 413
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 20/131 (15%)
Query: 18 PNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--PERILTIFAELENG 75
P+DV LR+L + A ++G G+ I+R++++ A + + + PERI+ + ++
Sbjct: 64 PSDVHLRMLCLVKHASLIVGHKGATISRIKSETSARINISNNIRGVPERIVYVRGTCDDV 123
Query: 76 LKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIG 135
K ++ AL E G ED G+ + I L++ GCIIG
Sbjct: 124 AKAYGMIVRALLE-------EHGNEDNGEDI-----------EISINLLIPHHLMGCIIG 165
Query: 136 KGGTKIKELRD 146
K G++++E+ D
Sbjct: 166 KRGSRLREIED 176
>gi|356531744|ref|XP_003534436.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 540
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PG-PERILTIFAELENGL 76
+D R L P R GSVIG+GG + +LR D KA + + D PG ER++TI + E
Sbjct: 42 DDTVFRYLCPVRKIGSVIGRGGDIVKQLRADTKAKIRIGDALPGCDERVVTIHSSSEETN 101
Query: 77 KVIEE---VLPALD---EIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
E V PA D + Q+ ED + N +L+V Q
Sbjct: 102 HFDETDDLVSPAQDALFRVHQRVIAEDAREDEDEERN----------HVTAKLLVPSDQI 151
Query: 131 GCIIGKGGTKIKELR 145
GC+IGKGG ++ +R
Sbjct: 152 GCVIGKGGQIVQNIR 166
>gi|322698395|gb|EFY90165.1| KH domain RNA-binding protein [Metarhizium acridum CQMa 102]
Length = 367
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 20/132 (15%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGLKV 78
+ LR ++ S+ AG +IGKGG N+A LR++ KA V+ +R+LTI E
Sbjct: 47 LTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVHDRVLTITGE------- 99
Query: 79 IEEVLPALDEIRQKYG-KGRGGEDGGDGYNGGGV---GGLGKDDYDIRLIVHQSQAGCII 134
D I + Y R +G GG+ G I+L++ +Q G II
Sbjct: 100 -------CDAISRAYAIVARALLEGAPAMGMGGIVQSNGTHLSSTAIKLLISHNQMGTII 152
Query: 135 GKGGTKIKELRD 146
G+ G KIK ++D
Sbjct: 153 GRQGLKIKHIQD 164
>gi|402225510|gb|EJU05571.1| hypothetical protein DACRYDRAFT_20011 [Dacryopinax sp. DJM-731 SS1]
Length = 413
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 19/131 (14%)
Query: 18 PNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PG-PERILTIFAELENG 75
P ++ +R LI ++ A +IGKGGS++ +R A +TV + PG PERIL + L+
Sbjct: 119 PQNIHMRALIVTQDASIIIGKGGSHVNEIREKSGARITVSESIPGNPERILNVTGPLDAV 178
Query: 76 LKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIG 135
K ++ +++ + + V G I+ I+ S+ G +IG
Sbjct: 179 AKAFGLIVRQIND---------------EPFEQPSVP--GSRAVTIKFIIPNSRMGTLIG 221
Query: 136 KGGTKIKELRD 146
K G+KIKE+++
Sbjct: 222 KAGSKIKEIQE 232
>gi|365766932|gb|EHN08421.1| Pbp2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 413
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 20/131 (15%)
Query: 18 PNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--PERILTIFAELENG 75
P+DV LR+L + A ++G G+ I+R++++ A + + + PERI+ + ++
Sbjct: 64 PSDVHLRMLCLVKHASLIVGHKGATISRIKSETSARINISNNIRGVPERIVYVRGTCDDV 123
Query: 76 LKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIG 135
K ++ AL E G ED G+ + I L++ GCIIG
Sbjct: 124 AKAYGMIVRALLE-------EHGNEDNGEDI-----------EISINLLIPHHLMGCIIG 165
Query: 136 KGGTKIKELRD 146
K G++++E+ D
Sbjct: 166 KRGSRLREIED 176
>gi|361123942|gb|EHK96076.1| putative RNA-binding protein rnc1 [Glarea lozoyensis 74030]
Length = 376
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 16/130 (12%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDF--KASVTVPDCPGPERILTIFAELENGL 76
+ + LR ++ S+ AG +IGKGG N+A LR++ KA V+ +R+LTI E
Sbjct: 50 SQLTLRAIVSSKEAGVIIGKGGKNVADLRDETGCKAGVSKVVQGVHDRVLTIAGGCEAIS 109
Query: 77 KVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGK 136
K V AL E + G GG V G + I+L++ +Q G IIG+
Sbjct: 110 KAYAIVAKALLEGAPQMGM------------GGVVAQSGS--HPIKLLISHNQMGTIIGR 155
Query: 137 GGTKIKELRD 146
G KIK ++D
Sbjct: 156 QGLKIKHIQD 165
>gi|398365639|ref|NP_009792.3| Pbp2p [Saccharomyces cerevisiae S288c]
gi|586350|sp|P38151.1|PBP2_YEAST RecName: Full=PAB1-binding protein 2
gi|536633|emb|CAA85196.1| unnamed protein product [Saccharomyces cerevisiae]
gi|151946618|gb|EDN64840.1| pbp1p binding protein [Saccharomyces cerevisiae YJM789]
gi|190408618|gb|EDV11883.1| PAB1-binding protein 2 [Saccharomyces cerevisiae RM11-1a]
gi|207347516|gb|EDZ73659.1| YBR233Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256272922|gb|EEU07890.1| Pbp2p [Saccharomyces cerevisiae JAY291]
gi|285810563|tpg|DAA07348.1| TPA: Pbp2p [Saccharomyces cerevisiae S288c]
gi|323310022|gb|EGA63217.1| Pbp2p [Saccharomyces cerevisiae FostersO]
gi|323334658|gb|EGA76032.1| Pbp2p [Saccharomyces cerevisiae AWRI796]
gi|323338741|gb|EGA79957.1| Pbp2p [Saccharomyces cerevisiae Vin13]
gi|323349811|gb|EGA84026.1| Pbp2p [Saccharomyces cerevisiae Lalvin QA23]
gi|323356159|gb|EGA87964.1| Pbp2p [Saccharomyces cerevisiae VL3]
gi|392301080|gb|EIW12169.1| Pbp2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 413
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 20/131 (15%)
Query: 18 PNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--PERILTIFAELENG 75
P+DV LR+L + A ++G G+ I+R++++ A + + + PERI+ + ++
Sbjct: 64 PSDVHLRMLCLVKHASLIVGHKGATISRIKSETSARINISNNIRGVPERIVYVRGTCDDV 123
Query: 76 LKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIG 135
K ++ AL E G ED G+ + I L++ GCIIG
Sbjct: 124 AKAYGMIVRALLE-------EHGNEDNGEDI-----------EISINLLIPHHLMGCIIG 165
Query: 136 KGGTKIKELRD 146
K G++++E+ D
Sbjct: 166 KRGSRLREIED 176
>gi|291240053|ref|XP_002739934.1| PREDICTED: far upstream element-binding protein-like [Saccoglossus
kowalevskii]
Length = 767
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 16/134 (11%)
Query: 15 RGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--PERILTIFAEL 72
R G + + +P ++ G VIG+GG I RL+ + + + G P+R+ T L
Sbjct: 119 RPGQSSLSEEYAVPDKLVGLVIGRGGEQITRLQAESGCKIQIAQDSGGLPDRMCT----L 174
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
+ IE +D I ++ G G G GGLG + I L++ ++ G
Sbjct: 175 TGNPQAIERAKALIDRIIER----------GQGPAVGSDGGLGDGNTTIELMIPSNKVGL 224
Query: 133 IIGKGGTKIKELRD 146
+IGKGG IK+L++
Sbjct: 225 VIGKGGEMIKKLQE 238
>gi|147789223|emb|CAN69138.1| hypothetical protein VITISV_022038 [Vitis vinifera]
Length = 569
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 45/131 (34%), Positives = 66/131 (50%), Gaps = 17/131 (12%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV--PDCPGPERILTIFAELENGLK 77
+V ++L + G VIGKGG+ + L+N+ AS++V P ER++TI A EN
Sbjct: 219 EVIFKILCSNDRVGGVIGKGGTIVKALQNEAGASISVGAPVAECDERLITITAS-ENPE- 276
Query: 78 VIEEVLPALDEIRQKYGKG--RGGEDGGD-GYNGGGVGGLGKDDYDIRLIVHQSQAGCII 134
PA + + + + G E G D G G V RL+V +Q GC++
Sbjct: 277 --SRYSPAQNGVILVFNRSIEAGIEKGLDSGSKGSPVSA--------RLVVPSNQVGCLM 326
Query: 135 GKGGTKIKELR 145
GKGGT I E+R
Sbjct: 327 GKGGTIISEMR 337
>gi|430813652|emb|CCJ29027.1| unnamed protein product [Pneumocystis jirovecii]
Length = 383
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 19/134 (14%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLR--NDFKASVT--VPDCPGPERILTIFAEL 72
G + V LR L+ ++ AG +IG+ G N+A LR N KA V+ VP+ +R+LTI L
Sbjct: 68 GGSQVTLRALVSTKEAGIIIGRQGKNVAELRGANGIKAGVSKVVPNI--HDRVLTISGSL 125
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
+ V A I Q + D G++ + IRL++ + G
Sbjct: 126 DG-------VSKAYAAIAQAF------IDNPIGHSTNHASSSSEPQSSIRLLISHNMMGT 172
Query: 133 IIGKGGTKIKELRD 146
IIG+ G KIK ++D
Sbjct: 173 IIGRQGLKIKHIQD 186
>gi|256083133|ref|XP_002577804.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|353230299|emb|CCD76470.1| putative heterogeneous nuclear ribonucleoprotein k [Schistosoma
mansoni]
Length = 298
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 26/30 (86%)
Query: 117 DDYDIRLIVHQSQAGCIIGKGGTKIKELRD 146
D D+RL+VHQSQAGC+IG+ G KIKELR+
Sbjct: 7 DGVDLRLLVHQSQAGCVIGRAGYKIKELRE 36
>gi|115442854|ref|XP_001218234.1| hypothetical protein ATEG_09612 [Aspergillus terreus NIH2624]
gi|114188103|gb|EAU29803.1| hypothetical protein ATEG_09612 [Aspergillus terreus NIH2624]
Length = 355
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 22/131 (16%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPG-PERILTIFAELENGLK 77
+ LR ++ S+ AG +IGK G N+A LR++ KA V+ PG +R+LT+ L +
Sbjct: 42 LTLRAIVSSKEAGIIIGKAGKNVADLRDETGVKAGVS-KVVPGVHDRVLTVTGPLHGTAR 100
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCIIG 135
V L E G G+GG+ ++ + +RL++ +Q G IIG
Sbjct: 101 AYALVAKGLLE----------------GAPQMGMGGIVSNNGTHPVRLLISHNQMGTIIG 144
Query: 136 KGGTKIKELRD 146
+ G KIK ++D
Sbjct: 145 RQGLKIKHIQD 155
>gi|189239335|ref|XP_973573.2| PREDICTED: similar to pasilla CG16765-PK [Tribolium castaneum]
Length = 535
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 13/136 (9%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PGPERILTIFAE 71
GG ++L+PS AG++IGKGG IA+L+ + A V + PG + +
Sbjct: 40 GGDGTYHFKVLVPSVAAGAIIGKGGETIAQLQKETGARVKMSKSHDFYPGTTERVCLITG 99
Query: 72 LENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAG 131
+ + V+ + + D+IR+K + + + D ++++V S AG
Sbjct: 100 SVDAIMVVADFIA--DKIREKPDLTKPLVETESKL-------MQDRDKQVKILVPNSTAG 150
Query: 132 CIIGKGGTKIKELRDT 147
IIGK G IK++++T
Sbjct: 151 MIIGKAGNYIKQIKET 166
>gi|320591828|gb|EFX04267.1| kh domain containing RNA-binding protein [Grosmannia clavigera
kw1407]
Length = 476
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 19/132 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGLKV 78
+ +R +I S A ++IGKGG N++++R A TV D ERILT+ ++ K
Sbjct: 117 IHIRAVISSPEAATIIGKGGENVSKIRQMSNAKCTVSDYQKGAVERILTVSGVVDAVAKA 176
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
++ L+ E G+ N Y +RL++ G IIGKGG
Sbjct: 177 FGLIIRTLNN-----------EPLGEPSNA------HSKTYPLRLLIPHILIGSIIGKGG 219
Query: 139 TKIKELRDTFDA 150
++IKE+++ A
Sbjct: 220 SRIKEIQEASGA 231
>gi|195401780|ref|XP_002059489.1| GJ19833 [Drosophila virilis]
gi|194150778|gb|EDW66460.1| GJ19833 [Drosophila virilis]
Length = 315
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 27/30 (90%)
Query: 117 DDYDIRLIVHQSQAGCIIGKGGTKIKELRD 146
+++D+RL++H S AGC+IGKGG KIKE+RD
Sbjct: 10 EEFDVRLLIHPSLAGCVIGKGGQKIKEIRD 39
>gi|384248562|gb|EIE22046.1| hypothetical protein COCSUDRAFT_43031 [Coccomyxa subellipsoidea
C-169]
Length = 243
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 19/131 (14%)
Query: 24 RLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV----PDCPGPERILTIFAELENGLKVI 79
RLL+ S+ GSVIGK G+ + +R++ A + V P+C ER++ I A + +
Sbjct: 106 RLLVQSKKVGSVIGKAGTIVKAIRDETGARIRVVEGVPNCD--ERVIVISAR-SDAARHT 162
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ AL ++ + + G + R++V +QAGC+IGK G
Sbjct: 163 DAAQEALFKVHARVHEHEEGPHPPPA------------NATTRMLVCHTQAGCLIGKAGA 210
Query: 140 KIKELRDTFDA 150
IKE+R+ A
Sbjct: 211 IIKEIREASGA 221
>gi|431922364|gb|ELK19455.1| Far upstream element-binding protein 2 [Pteropus alecto]
Length = 709
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 113 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 168
Query: 85 ALDEIRQKYGKGRGGEDGG--DGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 169 MLDDI---VSRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 219
Query: 143 ELRD 146
+L++
Sbjct: 220 QLQE 223
>gi|242002844|ref|XP_002436065.1| RNA-binding protein Nova-1, putative [Ixodes scapularis]
gi|215499401|gb|EEC08895.1| RNA-binding protein Nova-1, putative [Ixodes scapularis]
Length = 474
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 14/136 (10%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTIFA 70
GG ++L+P+ AG++IGKGG IA L+ + A V + PG ER+ I
Sbjct: 45 GGNGTYHFKILVPAVAAGAIIGKGGETIALLQKEAGARVKMSKSNDFYPGTTERVCLITG 104
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
+E L++ E ++ + E K D + + ++++V S A
Sbjct: 105 SVEGVLRIHEFIMEKIKEKPDPTAKIAIDFDHKQ---------PAEREKQVKILVPNSTA 155
Query: 131 GCIIGKGGTKIKELRD 146
G IIGKGG+ IK++++
Sbjct: 156 GMIIGKGGSYIKQIKE 171
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVP----DCPGPERILTIFAELENGLK 77
++++L+P+ AG +IGKGGS I +++ + A V + D ER +T+ ELEN K
Sbjct: 145 QVKILVPNSTAGMIIGKGGSYIKQIKEESGAYVQISQKSKDHALAERCITVIGELENNKK 204
Query: 78 VIEEVLPALDEIRQ 91
+L + E Q
Sbjct: 205 ACHMILAKIVEDPQ 218
>gi|195552915|ref|XP_002076565.1| GD17651 [Drosophila simulans]
gi|194202176|gb|EDX15752.1| GD17651 [Drosophila simulans]
Length = 213
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 15/96 (15%)
Query: 52 ASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGV 111
A + + D PERI+T+ + A I +K+ E+ +N V
Sbjct: 3 AKINISDGSCPERIVTVSG-------TTNAIFSAFTLITKKF------EEWCSQFND--V 47
Query: 112 GGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDT 147
G +GK IRLIV SQ G +IGK G+KIKE+R T
Sbjct: 48 GKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQT 83
Score = 35.4 bits (80), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFAELE 73
G + +RL++P+ GS+IGK GS I +R S+ V P ER +T+ E
Sbjct: 51 GKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVASEMLPNSTERAVTLSGSAE 110
Query: 74 NGLKVIEEVLPALDE 88
+ I ++ + E
Sbjct: 111 QITQCIYQICLVMLE 125
>gi|119195161|ref|XP_001248184.1| hypothetical protein CIMG_01955 [Coccidioides immitis RS]
gi|303310665|ref|XP_003065344.1| KH domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240105006|gb|EER23199.1| KH domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|392862573|gb|EAS36772.2| KH domain RNA-binding protein [Coccidioides immitis RS]
Length = 366
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 20/130 (15%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGLKV 78
+ LR ++ ++ AG +IGK G N+A LR++ KA V+ +R+LT+ L+ K
Sbjct: 48 LTLRAIVSTKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTGPLQGTAKA 107
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCIIGK 136
V +L E G G+GG+ +++ + +RL++ +Q G IIG+
Sbjct: 108 YGMVAKSLLE----------------GAPQMGMGGIIQNNGTHPVRLLISHNQMGTIIGR 151
Query: 137 GGTKIKELRD 146
G KIK ++D
Sbjct: 152 NGLKIKCIQD 161
>gi|61661324|gb|AAX51268.1| FLK [Arabidopsis thaliana]
gi|61661326|gb|AAX51269.1| FLK [Arabidopsis thaliana]
Length = 577
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 67/137 (48%), Gaps = 12/137 (8%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIF 69
KR+ G P + R+L+P++ GS+IG+ G I ++ + +A + + D P ER + +
Sbjct: 178 KRWPGWPGETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTERAVMVS 237
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
+ E + P++D + + + + DG +G RL+V SQ
Sbjct: 238 GKEEPE----SSLPPSMDGLLRVHMRIV------DGLDGEASQAPPPSKVSTRLLVPASQ 287
Query: 130 AGCIIGKGGTKIKELRD 146
AG +IGK G +K +++
Sbjct: 288 AGSLIGKQGGTVKAIQE 304
>gi|15229321|ref|NP_187112.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|6175183|gb|AAF04909.1|AC011437_24 putative RNA-binding protein [Arabidopsis thaliana]
gi|17979249|gb|AAL49941.1| AT3g04610/F7O18_9 [Arabidopsis thaliana]
gi|332640585|gb|AEE74106.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 577
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 67/137 (48%), Gaps = 12/137 (8%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIF 69
KR+ G P + R+L+P++ GS+IG+ G I ++ + +A + + D P ER + +
Sbjct: 178 KRWPGWPGETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTERAVMVS 237
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
+ E + P++D + + + + DG +G RL+V SQ
Sbjct: 238 GKEEPE----SSLPPSMDGLLRVHMRIV------DGLDGEASQAPPPSKVSTRLLVPASQ 287
Query: 130 AGCIIGKGGTKIKELRD 146
AG +IGK G +K +++
Sbjct: 288 AGSLIGKQGGTVKAIQE 304
>gi|255559157|ref|XP_002520600.1| conserved hypothetical protein [Ricinus communis]
gi|223540199|gb|EEF41773.1| conserved hypothetical protein [Ricinus communis]
Length = 161
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 10/138 (7%)
Query: 13 RFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--PERILTIFA 70
++ G P D RL++P GS+IG+ G I ++ + +A + + D P +RI+ I
Sbjct: 19 KWPGWPGDNVYRLIVPVAKVGSIIGRKGELIKQMCIETRARIRILDGPPSISDRIVLI-- 76
Query: 71 ELENGLKVIEEVL-PALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
+G + E L PA+D + + + + G G G V G +RL+V SQ
Sbjct: 77 ---SGKEEPEAALSPAIDAVLRVFKRVSGPSAGEGDATGSAVAGAAFS--SVRLLVASSQ 131
Query: 130 AGCIIGKGGTKIKELRDT 147
A +IGK G+ IK + ++
Sbjct: 132 AINLIGKQGSTIKSILES 149
>gi|390604812|gb|EIN14203.1| hypothetical protein PUNSTDRAFT_95868 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 330
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 22/139 (15%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVT--VPDCPGPERILTIFAE 71
GP+ + LR L+ ++ AG +IGKGG N+A LR+ KA V+ VP +R+LTI
Sbjct: 23 AGPDTLTLRALVSTKDAGVIIGKGGKNVADLRDQTGVKAGVSKVVPGV--HDRVLTISG- 79
Query: 72 LENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAG 131
++D + + YG + + + +RL++ + G
Sbjct: 80 -------------SVDRVAKAYGLIVAQLVASNPTS--PISASSSTHTSLRLLISHNLMG 124
Query: 132 CIIGKGGTKIKELRDTFDA 150
IIG+GGT+IK ++D A
Sbjct: 125 TIIGRGGTRIKAIQDNSGA 143
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 69/160 (43%), Gaps = 35/160 (21%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFAELENGLK 77
LRLLI + G++IG+GG+ I ++++ A + P ER++ + +E +
Sbjct: 112 TSLRLLISHNLMGTIIGRGGTRIKAIQDNSGARMVASKDMLPQSTERVVEVHGSVEAIER 171
Query: 78 VIEEVLPALDE---------------------IRQKYGKGRGGEDGGDGYNG--GGVGGL 114
++++ +L E ++Y + RG G NG G G
Sbjct: 172 AVDDIGKSLLEDWERGLGTVLFHPGAGDERSGSSRRYSENRGSYGGSRQSNGRPGSPGSP 231
Query: 115 GKD------DYDIR---LIVHQSQAGCIIGKGGTKIKELR 145
+ ++R + + GCIIG+GG+KI E+R
Sbjct: 232 SRQAPSSPQPTNLRTQNISIPSDMVGCIIGRGGSKITEIR 271
>gi|357476219|ref|XP_003608395.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355509450|gb|AES90592.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 616
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 10/139 (7%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERIL 66
S+F F+ V RLL + G+ IGK GS I L+ A + + D P PER++
Sbjct: 8 SSFTTFKRNNGHVVFRLLCHASRIGAFIGKSGSVIKSLQQLTGARIRIDDAPVDCPERVI 67
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVH 126
+ L V AL ++ ++ E G+G +G RL+V+
Sbjct: 68 VVIVNLNGDGDVSLNPQEALLKVFERILDVAAAESDGNG--------VGDRVVSCRLLVN 119
Query: 127 QSQAGCIIGKGGTKIKELR 145
QAG +IGKGG + ++R
Sbjct: 120 AGQAGGVIGKGGMVVAKIR 138
>gi|297791069|ref|XP_002863419.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297309254|gb|EFH39678.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
Length = 643
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 20/139 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFAELENGLK 77
V R+L PS V GSVIGK G I +R + +A + V D P P ER++TIF +
Sbjct: 43 VVYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVD-PFPGCSERVITIFCSVTEKKD 101
Query: 78 VIEEVLPALDEIRQKYGKGR-GGEDGGDGYNGGGVGGLG---------KDDY-DIRLIVH 126
+I+ ++ Y +D + V L +DD + RL+V
Sbjct: 102 IID-----IEHSELNYSIPLCSAQDALLKVHDAIVASLATAAENTKIDRDDIRECRLLVP 156
Query: 127 QSQAGCIIGKGGTKIKELR 145
SQ +IGK G+ IK++R
Sbjct: 157 SSQCSNVIGKSGSIIKKIR 175
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 6/48 (12%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV------PDCPGP 62
V+++LL+PS+V G +IGK GS I+ +R KA++ + P C P
Sbjct: 398 VKMQLLVPSKVIGCIIGKSGSIISEIRKRTKANIHISKGNNKPKCADP 445
>gi|340722699|ref|XP_003399741.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 1-like
isoform 2 [Bombus terrestris]
Length = 577
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 24/137 (17%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV--PDCPGP-ERILTIFAEL 72
G D LR+L+ S + G++IG+ GS I ++ +A V V D G E+ +TI+
Sbjct: 132 GRQADFPLRILVQSEMVGAIIGRQGSTIRQITQMTRARVDVHRKDSLGAAEKAITIYGNP 191
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
EN ++++ E+ Q+ + Y GL K + +R++ H + G
Sbjct: 192 ENCTNACKKIM----EVTQQ-----------EAY------GLSKGEISLRILAHNNLIGR 230
Query: 133 IIGKGGTKIKELRDTFD 149
IIGKGGT IK++ D
Sbjct: 231 IIGKGGTTIKKIMQDTD 247
>gi|320034805|gb|EFW16748.1| KH domain RNA-binding protein [Coccidioides posadasii str.
Silveira]
Length = 345
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 20/130 (15%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGLKV 78
+ LR ++ ++ AG +IGK G N+A LR++ KA V+ +R+LT+ L+ K
Sbjct: 48 LTLRAIVSTKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTGPLQGTAKA 107
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCIIGK 136
V +L E G G+GG+ +++ + +RL++ +Q G IIG+
Sbjct: 108 YGMVAKSLLE----------------GAPQMGMGGIIQNNGTHPVRLLISHNQMGTIIGR 151
Query: 137 GGTKIKELRD 146
G KIK ++D
Sbjct: 152 NGLKIKCIQD 161
>gi|397497276|ref|XP_003846118.1| PREDICTED: LOW QUALITY PROTEIN: far upstream element-binding
protein 2 [Pan paniscus]
Length = 738
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 177 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 232
Query: 85 ALDEIRQKYGKGRGGEDGG--DGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 233 MLDDI---VSRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 283
Query: 143 ELRD 146
+L++
Sbjct: 284 QLQE 287
>gi|297847528|ref|XP_002891645.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297337487|gb|EFH67904.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
Length = 622
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 31/157 (19%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD---CPGPERILTIFA---ELEN 74
V RLL P+ G++IGKGGS I L++ + + V D P ER++ I A + ++
Sbjct: 19 VHFRLLCPAARTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPVPSEERVVLIIAPSGKKKD 78
Query: 75 GLKVIEEVLPALDEIRQKYGKGRGGEDGGD---------------------GYNGGGVGG 113
V + P+ +E +Q+ G G GGD G + V G
Sbjct: 79 DSNVFDSENPSSEEPKQEKGSECAGTSGGDDEEAPSSAQMALLRVLERIVFGDDAASVDG 138
Query: 114 LGKDDYD----IRLIVHQSQAGCIIGKGGTKIKELRD 146
G D + R+IV +Q ++ KGG I+ +R+
Sbjct: 139 DGLDKGESESLCRMIVRGNQVDFLMSKGGKMIQRIRE 175
Score = 41.6 bits (96), Expect = 0.098, Method: Composition-based stats.
Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 24/131 (18%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV--PDCPGPERILTIFAE--LENG 75
+V RLL P+ GS+IGKGG+ + L+N+ AS+ V P ERI+ I A LE
Sbjct: 276 EVSFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVISARENLERR 335
Query: 76 LKVIEE-VLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCII 134
+ ++ V+ + I + +G RL+VH G ++
Sbjct: 336 HSLAQDGVMRVHNRIVE-------------------IGFEPSAAVVARLLVHSPYIGRLL 376
Query: 135 GKGGTKIKELR 145
GKGG I E+R
Sbjct: 377 GKGGHLISEMR 387
>gi|212542979|ref|XP_002151644.1| KH domain RNA-binding protein [Talaromyces marneffei ATCC 18224]
gi|210066551|gb|EEA20644.1| KH domain RNA-binding protein [Talaromyces marneffei ATCC 18224]
Length = 367
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 20/129 (15%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGLKVIE 80
LR ++ S+ AG +IGK G N+A LR++ KA V+ +R+LT+ L+ +
Sbjct: 50 LRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTGGLQGCARAYS 109
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCIIGKGG 138
V L E G G+GG+ +++ + IRL++ +Q G IIG+ G
Sbjct: 110 IVAKGLLE----------------GAPQVGMGGVVQNNGTHPIRLLISHNQMGTIIGRQG 153
Query: 139 TKIKELRDT 147
KIK ++D
Sbjct: 154 LKIKHIQDA 162
>gi|154295229|ref|XP_001548051.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
gi|347829292|emb|CCD44989.1| similar to KH domain RNA-binding protein [Botryotinia fuckeliana]
Length = 371
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 20/132 (15%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGL 76
+ + LR ++ S+ AG +IGKGG N+A LR++ KA V+ +R+LTI ++
Sbjct: 48 SQLTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVHDRVLTISGGCDSIS 107
Query: 77 KVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCII 134
+ V AL E G G+GG+ ++ + I+L++ +Q G II
Sbjct: 108 RAYSIVAKALLE----------------GAPQMGMGGVVSNNGTHPIKLLISHNQMGTII 151
Query: 135 GKGGTKIKELRD 146
G+ G KIK ++D
Sbjct: 152 GRQGLKIKHIQD 163
>gi|406607447|emb|CCH41238.1| Insulin-like growth factor 2 mRNA-binding protein 2
[Wickerhamomyces ciferrii]
Length = 329
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 24/137 (17%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRND--FKASVT--VPDCPGPERILTIFAELENGLKV 78
R+L+ + AG VIGK GS IA +R+ KA V+ V CP +RILT+ L++ +
Sbjct: 38 FRILVSVKEAGIVIGKNGSVIADIRDQTGVKAGVSRVVQGCP--DRILTVTGPLDSTAQA 95
Query: 79 IEEVLPAL------DEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
+ + AL + I Q + R G +G +RL++ +Q G
Sbjct: 96 LGMIAKALATSPLDETIFQYFPLKRLLPPGEEGSTS------------LRLLIPNAQMGT 143
Query: 133 IIGKGGTKIKELRDTFD 149
IIG+ G +IK L++ +D
Sbjct: 144 IIGRQGARIKTLQENYD 160
>gi|330917577|ref|XP_003297863.1| hypothetical protein PTT_08419 [Pyrenophora teres f. teres 0-1]
gi|311329164|gb|EFQ93994.1| hypothetical protein PTT_08419 [Pyrenophora teres f. teres 0-1]
Length = 371
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 20/132 (15%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGL 76
+ + LR ++ S+ AG +IGK G N+A LR++ +A V+ +R+L++ L
Sbjct: 43 SQLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVRAGVSKVVQGVHDRVLSVTGSLSG-- 100
Query: 77 KVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCII 134
I + YG G +G G+GG+ + D + IRL++ +Q G II
Sbjct: 101 ------------ISKAYGLAAKGLL--EGAPAMGMGGVIRTDGTHPIRLLISHNQMGTII 146
Query: 135 GKGGTKIKELRD 146
G+ G KIK+++D
Sbjct: 147 GRQGLKIKQIQD 158
>gi|400593892|gb|EJP61786.1| KH domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 373
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 20/130 (15%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGLKV 78
+ LR ++ S+ AG +IGKGG N+A LR++ KA V+ +R+LTI + +
Sbjct: 46 LTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVHDRVLTITGGCDAISRA 105
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGL--GKDDYDIRLIVHQSQAGCIIGK 136
V AL E G G+GG+ G + I+L++ +Q G +IG+
Sbjct: 106 YAIVARALLE----------------GAPAMGMGGILQGNGTHPIKLLISHNQMGTVIGR 149
Query: 137 GGTKIKELRD 146
G KIK ++D
Sbjct: 150 QGLKIKHIQD 159
>gi|156051102|ref|XP_001591512.1| hypothetical protein SS1G_06958 [Sclerotinia sclerotiorum 1980]
gi|154704736|gb|EDO04475.1| hypothetical protein SS1G_06958 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 371
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 20/132 (15%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGL 76
+ + LR ++ S+ AG +IGKGG N+A LR++ KA V+ +R+LTI ++
Sbjct: 48 SQLTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVHDRVLTISGGCDSIS 107
Query: 77 KVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCII 134
+ V AL E G G+GG+ ++ + I+L++ +Q G II
Sbjct: 108 RAYSIVAKALLE----------------GAPQMGMGGVVSNNGTHPIKLLISHNQMGTII 151
Query: 135 GKGGTKIKELRD 146
G+ G KIK ++D
Sbjct: 152 GRQGLKIKHIQD 163
>gi|449281891|gb|EMC88850.1| Poly(rC)-binding protein 3 [Columba livia]
Length = 330
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 67/142 (47%), Gaps = 17/142 (11%)
Query: 12 KRFRGGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFK--ASVTVPDCPGPERILTI 68
K GG N + +RLL+ + GS+IGK + L F+ A + + + PERI+TI
Sbjct: 4 KVSEGGLNVTLTIRLLMHGKEVGSIIGKVRMSFKSLPFSFQSGARINISEGNCPERIVTI 63
Query: 69 FAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQS 128
+ K A I K+ ED + + K +RL+V S
Sbjct: 64 TGPTDAIFK-------AFAMIAYKFE-----EDITNSMSNST--ATSKPPVTLRLVVPAS 109
Query: 129 QAGCIIGKGGTKIKELRDTFDA 150
Q G +IGKGG+KIKE+R++ A
Sbjct: 110 QCGSLIGKGGSKIKEIRESTGA 131
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 100 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 135
>gi|168018585|ref|XP_001761826.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686881|gb|EDQ73267.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 355
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 9/141 (6%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD-CPG-PERILTIF 69
K++ G P D RL++P + G +IG+ G + R+ + ++ + + + PG ERI+ +
Sbjct: 1 KKWAGWPGDNVFRLIVPVQKVGGIIGRKGEFVKRMCEETRSRIKILEGVPGTAERIVMVS 60
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
A E+ I + L + ++ +G E GG RL+V +Q
Sbjct: 61 AR-EDPEAAISPAMEGLLRVHRRVIEGAEPESADAEIAPGGA------PVSSRLLVAATQ 113
Query: 130 AGCIIGKGGTKIKELRDTFDA 150
AG +IG+ G IK ++D+ A
Sbjct: 114 AGSLIGRQGATIKSIQDSSGA 134
>gi|313239457|emb|CBY14391.1| unnamed protein product [Oikopleura dioica]
Length = 203
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 17/126 (13%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
D+ LR L+ + A +IG+ SNI LR + ++T+ +R+LTI A+ +K +
Sbjct: 7 DLTLRFLMNQKQASQIIGRNASNIKNLREQTECNITLSSREHEKRLLTIAAKKSISMKTV 66
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ L+ +YGK + L++ ++ G IIGKGG
Sbjct: 67 SRLGEILEAENNEYGKSTKLV-----------------PITLTLVIPKNICGMIIGKGGE 109
Query: 140 KIKELR 145
+K+LR
Sbjct: 110 ALKDLR 115
>gi|313224203|emb|CBY43618.1| unnamed protein product [Oikopleura dioica]
Length = 331
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 17/126 (13%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
D+ LR L+ + A +IG+ SNI LR + ++T+ +R+LTI A+ +K +
Sbjct: 7 DLTLRFLMNQKQASQIIGRNASNIKNLREQTECNITLSSREHEKRLLTIAAKKSISMKTV 66
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ L+ +YGK + L++ ++ G IIGKGG
Sbjct: 67 SRLGEILEAENNEYGK-----------------STKLVPITLTLVIPKNICGMIIGKGGE 109
Query: 140 KIKELR 145
+K+LR
Sbjct: 110 ALKDLR 115
>gi|365982663|ref|XP_003668165.1| hypothetical protein NDAI_0A07680 [Naumovozyma dairenensis CBS 421]
gi|343766931|emb|CCD22922.1| hypothetical protein NDAI_0A07680 [Naumovozyma dairenensis CBS 421]
Length = 394
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 61/140 (43%), Gaps = 10/140 (7%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLR--NDFKASVTVPDCPGPERILTIFAELENGLK 77
+VE R L+ R A ++IGK G+ I R+R ND K ++ +RIL +EN K
Sbjct: 69 NVEHRFLLSLREAAALIGKKGATIKRIREDNDVKIAINASSPLCTDRILQCNGSIENVSK 128
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLG--KDDYD------IRLIVHQSQ 129
I + L + E K K + K D D IRLI+ S
Sbjct: 129 AIVDCLKVIKENVNKPTKPFSFSFLNSLMSKPTTSDFKNVKTDEDLENVQSIRLILSTSM 188
Query: 130 AGCIIGKGGTKIKELRDTFD 149
G +IGK G IK+L + D
Sbjct: 189 IGAVIGKNGNIIKKLMEDHD 208
>gi|145238284|ref|XP_001391789.1| RNA-binding protein rnc1 [Aspergillus niger CBS 513.88]
gi|134076273|emb|CAL00757.1| unnamed protein product [Aspergillus niger]
gi|350635790|gb|EHA24151.1| hypothetical protein ASPNIDRAFT_209528 [Aspergillus niger ATCC
1015]
Length = 360
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 22/131 (16%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPG-PERILTIFAELENGLK 77
+ LR ++ S+ AG +IGK G N+A LR++ KA V+ PG +R+LT+ L +
Sbjct: 43 LTLRAIVSSKEAGIIIGKSGKNVADLRDETGVKAGVS-KVVPGVHDRVLTVTGPLNGTAR 101
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCIIG 135
V L E G G+GG+ ++ + +RL++ +Q G IIG
Sbjct: 102 AYALVAKGLLE----------------GAPQMGMGGIVSNNGTHPVRLLISHNQMGTIIG 145
Query: 136 KGGTKIKELRD 146
+ G KIK ++D
Sbjct: 146 RQGLKIKHIQD 156
>gi|412986388|emb|CCO14814.1| predicted protein [Bathycoccus prasinos]
Length = 594
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 14/142 (9%)
Query: 11 FKRFRGGPND--VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTI 68
F+ G P +E+R+ +P + G VIG+GG I R+ ++ A + +
Sbjct: 346 FQANMGAPQQQVLEIRIAVPDNMIGRVIGRGGETIKRISDESGARLQIERESNEVSAKGD 405
Query: 69 FAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQS 128
++LE +I +++ A +RQ G G G G GK +Y + I Q
Sbjct: 406 ASQLEIARMLIHDIVTA--PVRQAPAPGAGA----------GTSGEGKPEYVVIEIDSQG 453
Query: 129 QAGCIIGKGGTKIKELRDTFDA 150
Q G IIG+GG I+ + T A
Sbjct: 454 QEGRIIGRGGENIRSMAMTSGA 475
Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 11/123 (8%)
Query: 28 PSRVAGSVIGKGGSNIARLRNDFKASVTV---PDCP-GPERILTIFAELENGLKVIEEVL 83
P AG VIG GG I +L+ KA V + D P G R++TI E IE++L
Sbjct: 270 PQENAGKVIGHGGEKINQLQQATKAIVKIQSSADVPKGAPRLITIAGAPECVRHAIEQLL 329
Query: 84 PALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKE 143
P ++ + +G + +IR+ V + G +IG+GG IK
Sbjct: 330 PVVN-------ASKAPPANNIPVFQANMGAPQQQVLEIRIAVPDNMIGRVIGRGGETIKR 382
Query: 144 LRD 146
+ D
Sbjct: 383 ISD 385
>gi|403417714|emb|CCM04414.1| predicted protein [Fibroporia radiculosa]
Length = 420
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 19/133 (14%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PG-PERILTIFAELENGLK 77
++ +R LI ++ A +IGKGGS++ +R A V V + PG PERIL + L+ K
Sbjct: 119 NIHMRCLIVTQDASIIIGKGGSHVNEIREKSSARVMVSESIPGNPERILNVSGPLDAVSK 178
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKG 137
++ +++ + ++ V G I+ ++ S+ G +IGKG
Sbjct: 179 AFGLIVRRIND---------------EPFDKPSVPG--SRAVTIKFMIPNSRMGSVIGKG 221
Query: 138 GTKIKELRDTFDA 150
G KIKE++D A
Sbjct: 222 GAKIKEIQDASGA 234
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 68/147 (46%), Gaps = 22/147 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CPGP-ERILTI--------F 69
V ++ +IP+ GSVIGKGG+ I +++ A + + PG ER+L++
Sbjct: 203 VTIKFMIPNSRMGSVIGKGGAKIKEIQDASGARLNASEGMLPGSTERVLSVSGVADAIHI 262
Query: 70 AELENGLKVIE--EVLPALDE---IRQKYGKGRGGEDGGD---GYNG---GGVGGLGKDD 118
A G +IE E LP+ + R R +G GY+ G G +
Sbjct: 263 ATYYIGNILIEANERLPSYNNSSYYRPSSNSRRPPPNGSSYVPGYSNTYPGSSHGPPQQL 322
Query: 119 YDIRLIVHQSQAGCIIGKGGTKIKELR 145
++ + GCIIGKGG+KI E+R
Sbjct: 323 QTQQIYIPNDLVGCIIGKGGSKINEIR 349
>gi|346324545|gb|EGX94142.1| KH domain RNA-binding protein [Cordyceps militaris CM01]
Length = 420
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 18/129 (13%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGLKV 78
+ LR ++ S+ AG +IGKGG N+A LR++ KA V+ +R+LTI
Sbjct: 47 LTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVHDRVLTITG-------- 98
Query: 79 IEEVLPALDEIRQKYG-KGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKG 137
D I + Y R +G GGV G + I+L++ +Q G +IG+
Sbjct: 99 ------GCDAISRAYAIVARALLEGAPAMGMGGVVQ-GNGTHPIKLLISHNQMGTVIGRQ 151
Query: 138 GTKIKELRD 146
G KIK ++D
Sbjct: 152 GLKIKHIQD 160
>gi|168039902|ref|XP_001772435.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676232|gb|EDQ62717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 375
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 9/141 (6%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD-CPG-PERILTIF 69
K++ G P D RL++P + G +IG+ G + R+ + ++ + + + PG ERI+ +
Sbjct: 4 KKWAGWPGDNVFRLVVPVQKVGGIIGRKGEFVKRMCEETRSRIKILEGVPGTAERIVMVS 63
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
A E+ I + L + ++ +G E GG RL+V +Q
Sbjct: 64 AR-EDPEAAISPAMEGLLRVHRRVIEGAEPESVDAEIAPGGA------PVSSRLLVAATQ 116
Query: 130 AGCIIGKGGTKIKELRDTFDA 150
AG +IG+ G IK ++DT A
Sbjct: 117 AGSLIGRQGATIKSIQDTSGA 137
>gi|360042755|emb|CCD78165.1| putative poly(rc) binding protien [Schistosoma mansoni]
Length = 862
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 12/110 (10%)
Query: 37 GKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEIRQKYGKG 96
GK G N+ + R + A + + D PERI+TI E++ A + +K+
Sbjct: 190 GKRGENVRKYREESGARINISDGSSPERIVTITG-------TTEQIYIAFTLMSRKFE-- 240
Query: 97 RGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRD 146
+D G G +RL+V +Q G IIGKGG+KIK++R+
Sbjct: 241 ---DDFTQGLLRMGDETANCPPVTLRLLVPVAQCGSIIGKGGSKIKDVRE 287
Score = 39.7 bits (91), Expect = 0.41, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTI 68
V LRLL+P GS+IGKGGS I +R AS+ V P ER +TI
Sbjct: 260 VTLRLLVPVAQCGSIIGKGGSKIKDVRELTGASIQVASEALPTSTERTVTI 310
Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 25 LLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELEN 74
++I + V G +IG+GG+ I +RN KA + + +C ER +T+ +L++
Sbjct: 673 MIISNDVIGCIIGRGGTTINEIRNASKAQIKISNCEDGAKERKITVSGKLDS 724
>gi|256073934|ref|XP_002573282.1| poly(rc) binding protien [Schistosoma mansoni]
Length = 862
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 12/110 (10%)
Query: 37 GKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEIRQKYGKG 96
GK G N+ + R + A + + D PERI+TI E++ A + +K+
Sbjct: 190 GKRGENVRKYREESGARINISDGSSPERIVTITG-------TTEQIYIAFTLMSRKFE-- 240
Query: 97 RGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRD 146
+D G G +RL+V +Q G IIGKGG+KIK++R+
Sbjct: 241 ---DDFTQGLLRMGDETANCPPVTLRLLVPVAQCGSIIGKGGSKIKDVRE 287
Score = 39.7 bits (91), Expect = 0.41, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTI 68
V LRLL+P GS+IGKGGS I +R AS+ V P ER +TI
Sbjct: 260 VTLRLLVPVAQCGSIIGKGGSKIKDVRELTGASIQVASEALPTSTERTVTI 310
Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 25 LLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELEN 74
++I + V G +IG+GG+ I +RN KA + + +C ER +T+ +L++
Sbjct: 673 MIISNDVIGCIIGRGGTTINEIRNASKAQIKISNCEDGAKERKITVSGKLDS 724
>gi|189188542|ref|XP_001930610.1| Poly(rC)-binding protein 4 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187972216|gb|EDU39715.1| Poly(rC)-binding protein 4 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 364
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 68/133 (51%), Gaps = 20/133 (15%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGL 76
+ + LR ++ S+ AG +IGK G N+A LR++ +A V+ +R+L++ L
Sbjct: 43 SQLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVRAGVSKVVQGVHDRVLSVTGSLSG-- 100
Query: 77 KVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCII 134
I + YG G +G G+GG+ + D + IRL++ +Q G II
Sbjct: 101 ------------ISKAYGLAAKGLL--EGAPAMGMGGVIRTDGTHPIRLLISHNQMGTII 146
Query: 135 GKGGTKIKELRDT 147
G+ G KIK+++D
Sbjct: 147 GRQGLKIKQIQDA 159
>gi|326935642|ref|XP_003213877.1| PREDICTED: poly(rC)-binding protein 2-like, partial [Meleagris
gallopavo]
Length = 168
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 15/118 (12%)
Query: 33 GSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEIRQK 92
GS+IGKG S + ++R + A + + + PERI+T+ K ++ L+E
Sbjct: 2 GSIIGKGKS-VKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEE---- 56
Query: 93 YGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
D + +RL+V SQ G +IGKGG KIKE+R++ A
Sbjct: 57 --------DISSSMTNSTAAS--RPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGA 104
>gi|302406408|ref|XP_003001040.1| Poly(rC)-binding protein [Verticillium albo-atrum VaMs.102]
gi|261360298|gb|EEY22726.1| Poly(rC)-binding protein [Verticillium albo-atrum VaMs.102]
Length = 359
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 20/130 (15%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGLKV 78
+ LR ++ S+ AG +IGKGG N+A LR++ KA V+ +R+LTI E +
Sbjct: 47 LTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVHDRVLTITGGCEAISRA 106
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCIIGK 136
V AL E G G+GG+ + + + I+L++ +Q G IIG+
Sbjct: 107 YAIVAQALLE----------------GAPSLGMGGVPQSNGTHPIKLLISHNQMGTIIGR 150
Query: 137 GGTKIKELRD 146
G KIK ++D
Sbjct: 151 QGLKIKHIQD 160
>gi|358368755|dbj|GAA85371.1| KH domain RNA-binding protein [Aspergillus kawachii IFO 4308]
Length = 360
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 22/131 (16%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPG-PERILTIFAELENGLK 77
+ LR ++ S+ AG +IGK G N+A LR++ KA V+ PG +R+LT+ L +
Sbjct: 43 LTLRAIVSSKEAGIIIGKSGKNVADLRDETGVKAGVS-KVVPGVHDRVLTVTGPLNGTAR 101
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCIIG 135
V L E G G+GG+ ++ + +RL++ +Q G IIG
Sbjct: 102 AYALVAKGLLE----------------GAPQMGMGGIVSNNGTHPVRLLISHNQMGTIIG 145
Query: 136 KGGTKIKELRD 146
+ G KIK ++D
Sbjct: 146 RQGLKIKHIQD 156
>gi|406866101|gb|EKD19141.1| KH domain RNA-binding protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 372
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 16/132 (12%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--PERILTIFAELEN 74
G + + LR ++ S+ AG +IGK G N+A LR++ A V +R+LTI E
Sbjct: 45 GESQLTLRAIVSSKEAGVIIGKAGKNVADLRDETGAKAGVSKVVQGVHDRVLTIAGGCEA 104
Query: 75 GLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCII 134
K V AL E + G GG V G + I+L++ +Q G II
Sbjct: 105 ISKAYAIVARALLEGAPQMGM------------GGVVSTSGT--HPIKLLISHNQMGTII 150
Query: 135 GKGGTKIKELRD 146
G+ G KIK ++D
Sbjct: 151 GRQGLKIKHIQD 162
>gi|310792993|gb|EFQ28454.1| KH domain-containing protein [Glomerella graminicola M1.001]
Length = 384
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 20/130 (15%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGLKV 78
+ LR ++ S+ AG +IGK G N+A LR++ KA V+ +R+LTI ++ +
Sbjct: 47 LTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTITGGCQSVAEA 106
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCIIGK 136
V AL E G G+GG+ +++ + I+L++ +Q G IIG+
Sbjct: 107 YAIVAKALLE----------------GAPSMGMGGVVQNNGTHPIKLLISHNQMGTIIGR 150
Query: 137 GGTKIKELRD 146
G KIK ++D
Sbjct: 151 QGLKIKHIQD 160
>gi|302916853|ref|XP_003052237.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256733176|gb|EEU46524.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 373
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 20/130 (15%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGLKV 78
+ LR ++ S+ AG +IGKGG N+A LR++ KA V+ +R+LTI + +
Sbjct: 48 LTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVHDRVLTITGGCDAISRA 107
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCIIGK 136
V AL E G G+GG+ + + + I+L++ +Q G IIG+
Sbjct: 108 YAIVARALLE----------------GAPAMGMGGIVQSNGTHPIKLLISHNQMGTIIGR 151
Query: 137 GGTKIKELRD 146
G KIK ++D
Sbjct: 152 QGLKIKHIQD 161
>gi|449304748|gb|EMD00755.1| hypothetical protein BAUCODRAFT_60994 [Baudoinia compniacensis UAMH
10762]
Length = 333
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 60/128 (46%), Gaps = 16/128 (12%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PG-PERILTIFAELENGLKV 78
+ LR ++ S+ AG +IGK G N+A LR+ V PG +R+LT+ L
Sbjct: 18 ITLRAIVTSKEAGVIIGKAGQNVAELRDKTGVRAGVSKVVPGVHDRVLTVTGPLTG---- 73
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
I + YG G G G G + + IRL++ +Q G IIG+ G
Sbjct: 74 ----------ISEAYGLVADGLVKGAPQMGMGGVVANPNTHPIRLLISHNQMGTIIGRQG 123
Query: 139 TKIKELRD 146
KIK+++D
Sbjct: 124 LKIKQIQD 131
>gi|71023653|ref|XP_762056.1| hypothetical protein UM05909.1 [Ustilago maydis 521]
gi|46101621|gb|EAK86854.1| hypothetical protein UM05909.1 [Ustilago maydis 521]
Length = 850
Score = 48.9 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 19/132 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PG-PERILTIFAELENGLKV 78
+ +R LI + A +IGK G +I +R+ A + + + PG PERILT+ L+ K
Sbjct: 547 ISMRTLIVTSDASIIIGKSGKHINEIRDKSNARLNISEIIPGNPERILTVSGPLDAVSKA 606
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
++ +++ + ++ V G IR IV S+ G +IGK G
Sbjct: 607 FGLIVRRIND---------------EPFDLASVPG--SKSVTIRFIVPNSRMGSVIGKQG 649
Query: 139 TKIKELRDTFDA 150
+KIKE+++ A
Sbjct: 650 SKIKEIQEASGA 661
>gi|451847129|gb|EMD60437.1| hypothetical protein COCSADRAFT_99089 [Cochliobolus sativus ND90Pr]
Length = 364
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 20/131 (15%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGLKV 78
+ LR ++ S+ AG +IGK G N+A LR++ +A V+ +R+L++ L
Sbjct: 45 LTLRAIVSSKEAGVIIGKAGKNVADLRDETGVRAGVSKVVQGVHDRVLSVTGSLSG---- 100
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCIIGK 136
I + YG G +G G+GG+ + D + IRL++ +Q G IIG+
Sbjct: 101 ----------ISKAYGLAAKGLL--EGAPAMGMGGVIRTDGTHPIRLLISHNQMGTIIGR 148
Query: 137 GGTKIKELRDT 147
G KIK+++D
Sbjct: 149 QGLKIKQIQDA 159
>gi|145347410|ref|XP_001418160.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578389|gb|ABO96453.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 651
Score = 48.9 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 17/131 (12%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD-CPGPERILTIFAELENG 75
G ++ RLL P GSVIG+ G I ++R+ A V V + G E + + ++G
Sbjct: 309 GGTEITFRLLCPVSKTGSVIGRNGEVIQQIRSQTGAKVKVCEQVNGAEERIICVSSSDDG 368
Query: 76 LKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIG 135
L + AL + + + G E RL+V SQ GC+IG
Sbjct: 369 LAPMLAAQVALFRVYRCIVESAGNEI----------------PLPFRLLVQTSQIGCLIG 412
Query: 136 KGGTKIKELRD 146
KGG+ IK++R+
Sbjct: 413 KGGSIIKQIRN 423
>gi|401412830|ref|XP_003885862.1| HnRNP-E2 protein, related [Neospora caninum Liverpool]
gi|325120282|emb|CBZ55836.1| HnRNP-E2 protein, related [Neospora caninum Liverpool]
Length = 417
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 18/146 (12%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PGPE-RILTIFAELENGLK 77
L++++ + AG++IGK G IA + ++ + PG + R+L + E E
Sbjct: 20 LKMIVNNVAAGAIIGKNGVAIAAMEQQTGCALKLSPLNAFYPGTQDRVLVMSGEQEQVNN 79
Query: 78 VIEEVLPALDE-IRQKYGKGR--GGEDGGDGYNGGGVGGLGKDDY----------DIRLI 124
+ +L + E + ++G G G + G +G G +G+D + RL
Sbjct: 80 ALVLILGKIKETVTSQFGAGTQTGTQPGSNGAGNGSAECVGRDPFGSNDASQHKITCRLA 139
Query: 125 VHQSQAGCIIGKGGTKIKELRDTFDA 150
V +S IIGKGG +I+EL+DT A
Sbjct: 140 VPRSAVSTIIGKGGQQIRELQDTTGA 165
>gi|357447239|ref|XP_003593895.1| Heterogeneous nuclear ribonucleoprotein K [Medicago truncatula]
gi|357447243|ref|XP_003593897.1| Heterogeneous nuclear ribonucleoprotein K [Medicago truncatula]
gi|355482943|gb|AES64146.1| Heterogeneous nuclear ribonucleoprotein K [Medicago truncatula]
gi|355482945|gb|AES64148.1| Heterogeneous nuclear ribonucleoprotein K [Medicago truncatula]
Length = 631
Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 17/136 (12%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD-CPGPE-RILTIFAELENGLKV 78
+ R+L P+ V GSVIGK G I +R + +A V V D PG + R++TIF ++N ++
Sbjct: 42 IAYRILCPNEVIGSVIGKNGKVINSIRQESRAKVKVVDPFPGAKHRVITIFCHVKNKEEI 101
Query: 79 I-------EEVLPALDE--IRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
E+ L A + I+ E GD K+ + +++V SQ
Sbjct: 102 EIEDEFDNEKPLCAAQDALIKVHSAISNSIETAGDSEKK------RKNKDECQILVPSSQ 155
Query: 130 AGCIIGKGGTKIKELR 145
+ +IGK G IK+LR
Sbjct: 156 SAILIGKAGATIKQLR 171
Score = 42.7 bits (99), Expect = 0.046, Method: Composition-based stats.
Identities = 42/130 (32%), Positives = 57/130 (43%), Gaps = 31/130 (23%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--PERILTIFA-ELENGLK-- 77
+R+L PS G +IGKGG I R+R A + V D E ++TI A E + LK
Sbjct: 314 VRMLCPSDKIGQLIGKGGGTIKRMRQASGARIEVDDSKARHDECLITITATESTSDLKSV 373
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCIIG 135
+E VL ++I +DD IRL+V GCIIG
Sbjct: 374 AVEAVLLLQEKIND------------------------EDDAPVSIRLLVPSKVIGCIIG 409
Query: 136 KGGTKIKELR 145
+ G I E+R
Sbjct: 410 RSGAIINEIR 419
Score = 36.2 bits (82), Expect = 5.0, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPE 63
V +RLL+PS+V G +IG+ G+ I +R KA + + P+
Sbjct: 393 VSIRLLVPSKVIGCIIGRSGAIINEIRKRTKADIQISRSNKPK 435
>gi|115479947|ref|NP_001063567.1| Os09g0498600 [Oryza sativa Japonica Group]
gi|113631800|dbj|BAF25481.1| Os09g0498600 [Oryza sativa Japonica Group]
gi|215695028|dbj|BAG90219.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 398
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 30/145 (20%)
Query: 3 FFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV--PDCP 60
FF++Q ++ R++ + + GS+IGKGGS I L+++ AS+ + P+
Sbjct: 20 FFVEQ------------EIVFRMICLNEMVGSIIGKGGSTIRALQSETGASIKIIEPNSD 67
Query: 61 GPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYD 120
ER++ I A EN + PA D + + + R E D +
Sbjct: 68 SEERVIVISAH-ENSEMMHS---PAQDAVLRVH--SRISESSMDKSSA----------VT 111
Query: 121 IRLIVHQSQAGCIIGKGGTKIKELR 145
RL+V GC++GKGG+ I E+R
Sbjct: 112 ARLLVPSQHIGCLLGKGGSIIAEMR 136
>gi|28839814|gb|AAH47844.1| Hnrpkl protein [Danio rerio]
Length = 84
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 6/49 (12%)
Query: 11 FKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC 59
FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ P+C
Sbjct: 34 FKRSRNTDEMVELRVLLQSKNAGAVIGKGGKNIKALRTDY------PEC 76
>gi|378726019|gb|EHY52478.1| hypothetical protein HMPREF1120_00690 [Exophiala dermatitidis
NIH/UT8656]
Length = 365
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 20/132 (15%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGL 76
+ + LR ++ ++ AG +IGK G N+A LR + KA V+ +R+LT+ L
Sbjct: 44 SQLTLRAIVSTKEAGVIIGKAGKNVADLREETGVKAGVSKVVQGVHDRVLTVTGPLSGIA 103
Query: 77 KVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCII 134
K V L E G G+GG+ +++ + IRL++ +Q G II
Sbjct: 104 KAYSLVAKGLLE----------------GAPQVGMGGVVQNNGTHPIRLLISHNQMGTII 147
Query: 135 GKGGTKIKELRD 146
G+ G KIK ++D
Sbjct: 148 GRQGLKIKHIQD 159
>gi|46125203|ref|XP_387155.1| hypothetical protein FG06979.1 [Gibberella zeae PH-1]
Length = 372
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 20/130 (15%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGLKV 78
+ LR ++ S+ AG +IGKGG N+A LR++ KA V+ +R+LTI + +
Sbjct: 47 LTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVHDRVLTITGGCDAISRA 106
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCIIGK 136
V AL E G G+GG+ + + + I+L++ +Q G IIG+
Sbjct: 107 YAIVARALLE----------------GAPAMGMGGVVQSNGTHPIKLLISHNQMGTIIGR 150
Query: 137 GGTKIKELRD 146
G KIK ++D
Sbjct: 151 QGLKIKHIQD 160
>gi|426199945|gb|EKV49869.1| hypothetical protein AGABI2DRAFT_63586 [Agaricus bisporus var.
bisporus H97]
Length = 365
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 67/133 (50%), Gaps = 19/133 (14%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PG-PERILTIFAELENGLK 77
++ +R LI ++ A +IGKGGS++ +R A V V + PG PERIL + L+ K
Sbjct: 63 NIHMRCLIVTQDASIIIGKGGSHVNEIREKSGARVMVSESIPGNPERILNVSGPLDAVSK 122
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKG 137
++ +++ + ++ V G I+ ++ S+ G +IGKG
Sbjct: 123 AFGLIVRRIND---------------EPFDVPSV--PGSRAVTIKFMIPNSRMGSVIGKG 165
Query: 138 GTKIKELRDTFDA 150
G+KIKE++D A
Sbjct: 166 GSKIKEIQDASGA 178
>gi|409082121|gb|EKM82479.1| hypothetical protein AGABI1DRAFT_33710 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 365
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 67/133 (50%), Gaps = 19/133 (14%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PG-PERILTIFAELENGLK 77
++ +R LI ++ A +IGKGGS++ +R A V V + PG PERIL + L+ K
Sbjct: 63 NIHMRCLIVTQDASIIIGKGGSHVNEIREKSGARVMVSESIPGNPERILNVSGPLDAVSK 122
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKG 137
++ +++ + ++ V G I+ ++ S+ G +IGKG
Sbjct: 123 AFGLIVRRIND---------------EPFDVPSV--PGSRAVTIKFMIPNSRMGSVIGKG 165
Query: 138 GTKIKELRDTFDA 150
G+KIKE++D A
Sbjct: 166 GSKIKEIQDASGA 178
>gi|451997944|gb|EMD90409.1| hypothetical protein COCHEDRAFT_1225891 [Cochliobolus
heterostrophus C5]
Length = 365
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 20/131 (15%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGLKV 78
+ LR ++ S+ AG +IGK G N+A LR++ +A V+ +R+L++ L
Sbjct: 45 LTLRAIVSSKEAGVIIGKAGKNVADLRDETGVRAGVSKVVQGVHDRVLSVTGSLSG---- 100
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCIIGK 136
I + YG G +G G+GG+ + D + IRL++ +Q G IIG+
Sbjct: 101 ----------ISKAYGLAAKGLL--EGAPAMGMGGVIRTDGTHPIRLLISHNQMGTIIGR 148
Query: 137 GGTKIKELRDT 147
G KIK+++D
Sbjct: 149 QGLKIKQIQDA 159
>gi|408395856|gb|EKJ75028.1| hypothetical protein FPSE_04740 [Fusarium pseudograminearum CS3096]
Length = 372
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 20/131 (15%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGLKV 78
+ LR ++ S+ AG +IGKGG N+A LR++ KA V+ +R+LTI + +
Sbjct: 47 LTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVHDRVLTITGGCDAISRA 106
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCIIGK 136
V AL E G G+GG+ + + + I+L++ +Q G IIG+
Sbjct: 107 YAIVARALLE----------------GAPAMGMGGVVQSNGTHPIKLLISHNQMGTIIGR 150
Query: 137 GGTKIKELRDT 147
G KIK ++D
Sbjct: 151 QGLKIKHIQDA 161
>gi|342880804|gb|EGU81822.1| hypothetical protein FOXB_07617 [Fusarium oxysporum Fo5176]
Length = 372
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 20/131 (15%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGLKV 78
+ LR ++ S+ AG +IGKGG N+A LR++ KA V+ +R+LTI + +
Sbjct: 47 LTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVHDRVLTITGGCDAISRA 106
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCIIGK 136
V AL E G G+GG+ + + + I+L++ +Q G IIG+
Sbjct: 107 YAIVARALLE----------------GAPAMGMGGVVQSNGTHPIKLLISHNQMGTIIGR 150
Query: 137 GGTKIKELRDT 147
G KIK ++D
Sbjct: 151 QGLKIKHIQDA 161
>gi|297833144|ref|XP_002884454.1| hypothetical protein ARALYDRAFT_477721 [Arabidopsis lyrata subsp.
lyrata]
gi|297330294|gb|EFH60713.1| hypothetical protein ARALYDRAFT_477721 [Arabidopsis lyrata subsp.
lyrata]
Length = 568
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 67/137 (48%), Gaps = 12/137 (8%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIF 69
KR+ G P + R+L+P++ GS+IG+ G I ++ + +A + + D P ER + +
Sbjct: 169 KRWPGWPGETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTERAVMVS 228
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
+ E + P++D + + + + DG +G RL+V SQ
Sbjct: 229 GKEEPE----SSLPPSMDGLLRVHMRIV------DGLDGEPSQAPPASKVSTRLLVPASQ 278
Query: 130 AGCIIGKGGTKIKELRD 146
AG +IGK G +K +++
Sbjct: 279 AGSLIGKQGGTVKAIQE 295
>gi|256071470|ref|XP_002572063.1| hypothetical protein [Schistosoma mansoni]
Length = 408
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 41 SNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEI--------RQK 92
S + RL+ F + C +RI+TI +L+ ++ +V P L +I ++
Sbjct: 2 SFVIRLKFSFPSFFPTLTCFFSDRIMTIEGDLQAICSIMRDVCPKLKDIMNAKLSDPKRI 61
Query: 93 YGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTF 148
G + ++ D R++VH+SQAG +IG+GG +IK+LRD +
Sbjct: 62 MGTQGSRRRPRRSEDPERDDEEDENMIDFRILVHESQAGSVIGRGGERIKDLRDKY 117
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 11/101 (10%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASV-TVPDCPGP---ERILTIFAELEN 74
N ++ R+L+ AGSVIG+GG I LR+ +K V V P +R++ + A+ +N
Sbjct: 86 NMIDFRILVHESQAGSVIGRGGERIKDLRDKYKMRVIKVYQMLAPLSTDRVVQMVADPDN 145
Query: 75 GLKVIEEVLPALDEI-----RQKYGKGRGGEDGGDGYNGGG 110
++ + V+ A++ R+ Y E GD N GG
Sbjct: 146 VVQCLRAVIEAVESAPPRGRREDYDAANFSE--GDALNYGG 184
>gi|357140452|ref|XP_003571781.1| PREDICTED: uncharacterized protein LOC100836040 [Brachypodium
distachyon]
Length = 587
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 17/132 (12%)
Query: 13 RFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV--PDCPGPERILTIFA 70
R+ G P R+LI S G++IG+ G + RL + KASV V ER++ IFA
Sbjct: 54 RYPGWPGTTVFRMLISSTKVGAIIGQKGERVRRLCEETKASVRVIGGHFAAAERVVLIFA 113
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDI-RLIVHQSQ 129
+ + E + PA+D + + Y + N G+ G+G D + R+++ Q
Sbjct: 114 KEQPD----EPIPPAMDALLRVY---------QNIVNDDGL-GMGSDSAVVTRILIPSEQ 159
Query: 130 AGCIIGKGGTKI 141
A +IG+ G+ I
Sbjct: 160 ALNLIGEQGSMI 171
>gi|259487459|tpe|CBF86155.1| TPA: KH domain RNA binding protein (AFU_orthologue; AFUA_2G04940)
[Aspergillus nidulans FGSC A4]
Length = 465
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 19/144 (13%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERIL 66
S +R + N + +R +I S+ A +VIGKGG N++++R A TV D ERIL
Sbjct: 96 SEQQRPQDESNWIHIRAVISSQEAATVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERIL 155
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVH 126
T+ + K ++ L+ + + Y +RL++
Sbjct: 156 TVSGPQDAVAKAFGLIIRTLNN---------------EPLDAASTA--QSKTYPLRLLIP 198
Query: 127 QSQAGCIIGKGGTKIKELRDTFDA 150
G IIGKGGT+I+E++D A
Sbjct: 199 HILIGSIIGKGGTRIREIQDASGA 222
>gi|116192195|ref|XP_001221910.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88181728|gb|EAQ89196.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 375
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 20/132 (15%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGL 76
+ LR ++ S+ AG +IGKGG N+A LR++ KA V+ +R+LTI E
Sbjct: 48 TQLTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVYDRVLTITGGCEAIS 107
Query: 77 KVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCII 134
+ V AL E G G+GG+ + + + I+L++ +Q G II
Sbjct: 108 RAYAVVARALLE----------------GAPTIGMGGVVQSNGTHPIKLLISHNQMGTII 151
Query: 135 GKGGTKIKELRD 146
G+ G KIK ++D
Sbjct: 152 GRQGLKIKHIQD 163
>gi|353229706|emb|CCD75877.1| hypothetical protein Smp_005860.3 [Schistosoma mansoni]
Length = 392
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 41 SNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEI--------RQK 92
S + RL+ F + C +RI+TI +L+ ++ +V P L +I ++
Sbjct: 2 SFVIRLKFSFPSFFPTLTCFFSDRIMTIEGDLQAICSIMRDVCPKLKDIMNAKLSDPKRI 61
Query: 93 YGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTF 148
G + ++ D R++VH+SQAG +IG+GG +IK+LRD +
Sbjct: 62 MGTQGSRRRPRRSEDPERDDEEDENMIDFRILVHESQAGSVIGRGGERIKDLRDKY 117
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 11/101 (10%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASV-TVPDCPGP---ERILTIFAELEN 74
N ++ R+L+ AGSVIG+GG I LR+ +K V V P +R++ + A+ +N
Sbjct: 86 NMIDFRILVHESQAGSVIGRGGERIKDLRDKYKMRVIKVYQMLAPLSTDRVVQMVADPDN 145
Query: 75 GLKVIEEVLPALDEI-----RQKYGKGRGGEDGGDGYNGGG 110
++ + V+ A++ R+ Y E GD N GG
Sbjct: 146 VVQCLRAVIEAVESAPPRGRREDYDAANFSE--GDALNYGG 184
>gi|344283688|ref|XP_003413603.1| PREDICTED: poly(rC)-binding protein 1-like [Loxodonta africana]
Length = 438
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 14/125 (11%)
Query: 26 LIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLPA 85
L P + +G+ G+++ R+R + A + + + PERI+T+ K ++
Sbjct: 101 LWPPHAHEASLGRKGTSVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMIIDK 160
Query: 86 LDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELR 145
L+E D + +RL+V +Q G +IGKGG KIKE+R
Sbjct: 161 LEE------------DINSSMTNSTAAS--RPPVTLRLVVPATQCGSLIGKGGCKIKEIR 206
Query: 146 DTFDA 150
++ A
Sbjct: 207 ESTGA 211
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDCPGPERILTIFAELENG 75
V LRL++P+ GS+IGKGG I +R A V V P+ ER +TI ++
Sbjct: 180 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN--STERAITIAGVPQSV 237
Query: 76 LKVIEEVLPALDEIRQKYGKGR 97
+ ++++ + E + +GR
Sbjct: 238 TECVKQICLVMLETLSQSPQGR 259
>gi|224141139|ref|XP_002323932.1| predicted protein [Populus trichocarpa]
gi|222866934|gb|EEF04065.1| predicted protein [Populus trichocarpa]
Length = 722
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 18/134 (13%)
Query: 18 PNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASV----TVPDCPGPERILTIFAEL- 72
P + R+L + G VIGKGG+ + L+N+ A++ TV +C ER++T+ A
Sbjct: 297 PQQLVFRILCTTDRIGGVIGKGGNIVRALQNETGAAISVGPTVSECD--ERLITVTASEN 354
Query: 73 -ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAG 131
E+ ++ + + + G +G + G G V RL+V SQ G
Sbjct: 355 PESRYSAAQKTIVLVFSRAVESGIEKGLDPGSS--RGSPVTA--------RLVVSPSQVG 404
Query: 132 CIIGKGGTKIKELR 145
C++GKGGT I E+R
Sbjct: 405 CLLGKGGTIISEMR 418
Score = 40.4 bits (93), Expect = 0.26, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 16/133 (12%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGLKV 78
V RLL + G VIGK G+ I L+ A V + D P P+R++T+ + V
Sbjct: 36 VSFRLLCHASRIGGVIGKAGNIIKGLQQQTGAKVRIEDAPSDSPDRVITVIGPITQSAVV 95
Query: 79 IEEVLPALDEIRQKYGKGRGGED------GGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
+ A++ + + R E D G V R++ S G
Sbjct: 96 FSRIESAVEVSKGQEALVRVFERILEVAAESDSVADGVV--------SCRMLAEVSSVGA 147
Query: 133 IIGKGGTKIKELR 145
+IGKGG ++++R
Sbjct: 148 VIGKGGKVVEKIR 160
>gi|367008424|ref|XP_003678712.1| hypothetical protein TDEL_0A01690 [Torulaspora delbrueckii]
gi|359746369|emb|CCE89501.1| hypothetical protein TDEL_0A01690 [Torulaspora delbrueckii]
Length = 430
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 19/128 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--PERILTIFAELENGLKV 78
V LR+L + A ++G G NI++++ + V D PER++ + EN K
Sbjct: 83 VHLRMLCLVKQASMIVGHKGENISKIKAVTSTRINVSDNVRGVPERVVYVRGSCENVAKA 142
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
++ ++++ R GE+G Y+G + I L++ GCIIGK G
Sbjct: 143 FGMIVRSIND--------RHGEEG---YDGNSIMST------INLLISHHLMGCIIGKHG 185
Query: 139 TKIKELRD 146
++++E+ +
Sbjct: 186 SRLREIEE 193
>gi|367050644|ref|XP_003655701.1| hypothetical protein THITE_2119679 [Thielavia terrestris NRRL 8126]
gi|347002965|gb|AEO69365.1| hypothetical protein THITE_2119679 [Thielavia terrestris NRRL 8126]
Length = 374
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 20/132 (15%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGL 76
+ LR ++ S+ AG +IGKGG N+A LR + KA V+ +R+LTI E
Sbjct: 48 TQLTLRAIVSSKEAGVIIGKGGKNVADLREETGVKAGVSKVVQGVYDRVLTITGGCEAIS 107
Query: 77 KVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCII 134
+ V +L E G G+GG+ +++ + I+L++ +Q G II
Sbjct: 108 RAYAAVARSLLE----------------GAPTMGMGGVIQNNGTHPIKLLISHNQMGTII 151
Query: 135 GKGGTKIKELRD 146
G+ G KIK ++D
Sbjct: 152 GRQGLKIKHIQD 163
>gi|356572245|ref|XP_003554280.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 528
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 11/140 (7%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--PERIL 66
+ K++ G P + R+L+P + GS+IG+ G I ++ + KA + + D P ER +
Sbjct: 113 NEIKKWPGWPGENVFRMLVPVQKVGSIIGRKGEFIKKITEETKARIKILDGPPGISERAV 172
Query: 67 TIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVH 126
+ A+ E + V L +Q R D D G + RL+V
Sbjct: 173 MVSAKEEPDCPIPPAVDGLLRVHKQVINVDR---DLADSALAAGRSVV------TRLLVA 223
Query: 127 QSQAGCIIGKGGTKIKELRD 146
+QAG +IGK G+ IK ++D
Sbjct: 224 DTQAGSLIGKQGSTIKSIQD 243
>gi|344232044|gb|EGV63923.1| hypothetical protein CANTEDRAFT_104592 [Candida tenuis ATCC 10573]
Length = 408
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 62/142 (43%), Gaps = 14/142 (9%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLR--NDFKASVTVPDCPGPERILTIFAELENGLKV 78
+ RLLI S+ +G +IG+ GS I +R D KA ++ ERILT+ L+N K
Sbjct: 97 INYRLLISSKESGCLIGQSGSVINSIRQETDTKAGISKLLAHTQERILTVSGTLDNCSKA 156
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGG------DGYNGGGVGGL------GKDDYDIRLIVH 126
I AL E +Q G + Y + L +RL++
Sbjct: 157 ISYFSQALIEAQQHEADAASTASAGPMPSSVEEYPHFPLRQLSIHKNIAGHSTVLRLLIP 216
Query: 127 QSQAGCIIGKGGTKIKELRDTF 148
SQ G IIG G +I+ ++ F
Sbjct: 217 NSQMGTIIGAKGARIQRIQQVF 238
>gi|358387038|gb|EHK24633.1| hypothetical protein TRIVIDRAFT_54511 [Trichoderma virens Gv29-8]
Length = 369
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 20/130 (15%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGLKV 78
+ LR ++ S+ AG +IGKGG N+A LR++ KA V+ +R+LTI + +
Sbjct: 47 LTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVHDRVLTITGGCDAISRA 106
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCIIGK 136
V AL E G G+GG+ + + + I+L++ +Q G IIG+
Sbjct: 107 YAIVARALLE----------------GAPAVGMGGVIQSNGTHPIKLLISHNQMGTIIGR 150
Query: 137 GGTKIKELRD 146
G KIK ++D
Sbjct: 151 QGLKIKHIQD 160
>gi|56753095|gb|AAW24757.1| SJCHGC01201 protein [Schistosoma japonicum]
Length = 270
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 25/27 (92%)
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
D+RL+VH SQAGC+IG+GG KIKELR+
Sbjct: 10 DLRLLVHYSQAGCVIGRGGYKIKELRE 36
>gi|307187117|gb|EFN72361.1| Far upstream element-binding protein 1 [Camponotus floridanus]
Length = 690
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P ++ G +IG+GG I RL+++ + + P+ G PER+ T+ E + E VL
Sbjct: 105 VPDKMVGLIIGRGGEQITRLQSETGCKIQMAPESGGLPERVCTLTGSREAVNRAKELVLS 164
Query: 85 ALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKEL 144
+++ + +G G + GG GG+ + + +++ + G IIGKGG IK+L
Sbjct: 165 IVNQ--RSRSEGIGDINMSSASASGGNGGMIHPGF-VEIMIPGPKVGLIIGKGGETIKQL 221
Query: 145 RD 146
++
Sbjct: 222 QE 223
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 7/129 (5%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKAS-VTVPDCPG-----PERILTIFAELENGL 76
+ ++IP G +IGKGG I +L+ A V + + P P RI ++E
Sbjct: 198 VEIMIPGPKVGLIIGKGGETIKQLQEKSGAKMVVIQEGPSQEQEKPLRITGDPQKVEYAK 257
Query: 77 KVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGK 136
+++ E++ A E++ + GRG E G+ N + + ++V ++ G +IGK
Sbjct: 258 QLVYELI-AEKEMQMFHRGGRGTERTGNYSNDSSFNHGPANSDGVEVLVPRAAVGVVIGK 316
Query: 137 GGTKIKELR 145
GG IK+++
Sbjct: 317 GGDMIKKIQ 325
>gi|221122019|ref|XP_002164819.1| PREDICTED: RNA-binding protein Nova-1-like [Hydra magnipapillata]
Length = 400
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 68/133 (51%), Gaps = 20/133 (15%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-PD---CPGP-ERILTIFAELENGLK 77
L++LIP+ AG++IGKGG+NI L++ + A + + P+ PG ERI+ + ++ +
Sbjct: 47 LKVLIPNYAAGAIIGKGGANIGELQSRYGAKIRLSPNGEFYPGTEERIVILTGDVSQIID 106
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKG 137
+ ++ + + KG ED G ++++ + AG +IG+G
Sbjct: 107 LHNYIIDKVHADSMEGPKGMRDEDRGQ---------------KVKIVCPNATAGLVIGRG 151
Query: 138 GTKIKELRDTFDA 150
G+ IK L++ A
Sbjct: 152 GSTIKSLQEETKA 164
Score = 35.0 bits (79), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP----ERILTIFAELENGLK 77
+++++ P+ AG VIG+GGS I L+ + KA + + ERI+TI E ++
Sbjct: 134 KVKIVCPNATAGLVIGRGGSTIKSLQEETKAKIMISGRDESKVMGERIITIAGNTEQRIE 193
Query: 78 VIEEVL 83
+V+
Sbjct: 194 ASRQVI 199
>gi|296088778|emb|CBI38228.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 66/131 (50%), Gaps = 17/131 (12%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV--PDCPGPERILTIFAELENGLK 77
+V ++L + G VIGKGG+ + L+N+ AS++V P ER++TI A EN
Sbjct: 235 EVIFKILCSNDRVGGVIGKGGTIVKALQNEAGASISVGAPVAECDERLITITAS-ENPE- 292
Query: 78 VIEEVLPALDEIRQKYGKG--RGGEDGGD-GYNGGGVGGLGKDDYDIRLIVHQSQAGCII 134
PA + + + + G E G D G G V RL+V +Q GC++
Sbjct: 293 --SRYSPAQNGVILVFNRSIEAGIEKGLDSGSKGSPVSA--------RLVVPSNQVGCLM 342
Query: 135 GKGGTKIKELR 145
GKGGT I E+R
Sbjct: 343 GKGGTIISEMR 353
>gi|226485617|emb|CAX75228.1| Heterogeneous nuclear ribonucleoprotein K [Schistosoma japonicum]
Length = 297
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 25/27 (92%)
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
D+RL+VH SQAGC+IG+GG KIKELR+
Sbjct: 10 DLRLLVHYSQAGCVIGRGGYKIKELRE 36
>gi|116784616|gb|ABK23409.1| unknown [Picea sitchensis]
Length = 407
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 12/131 (9%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CPGPERILTIFAE--LENG 75
D+ R+++ S G VIGK GS I +LR D A + + D P +R++ I ++ E
Sbjct: 92 DIVFRIVVASNKIGKVIGKQGSKINQLREDTGARIKIADPVTPLEDRVIIISSKGEEEEE 151
Query: 76 LKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIG 135
E+ L + + E+ G+ VG +RL++ SQAG +IG
Sbjct: 152 TSAAEQALIQIATVIL--------EESGESSATAKVGTRHVGPNMMRLLIAGSQAGSLIG 203
Query: 136 KGGTKIKELRD 146
G IKE+R+
Sbjct: 204 ASGKTIKEIRN 214
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 18/82 (21%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV------PDCPGP---ERILT 67
GPN +RLLI AGS+IG G I +RND A++ + P C +R++
Sbjct: 185 GPN--MMRLLIAGSQAGSLIGASGKTIKEIRNDSGATIKILPQNLSPICASASETDRLVQ 242
Query: 68 IFAELENGLKVIEEVLPALDEI 89
I E + +VL ALD I
Sbjct: 243 ISGE-------VSQVLKALDHI 257
>gi|358367184|dbj|GAA83803.1| KH domain RNA binding protein [Aspergillus kawachii IFO 4308]
Length = 468
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 19/132 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGLKV 78
+ +R +I S+ A +VIGKGG N++++R A TV D ERILT+ + K
Sbjct: 108 IHIRAVISSQEAATVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSGPQDAAAKA 167
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
++ L+ + D + Y +RL++ G IIGKGG
Sbjct: 168 FGLIIRTLN------------NEPLDAPSTA-----QSKTYPLRLLIPHILIGSIIGKGG 210
Query: 139 TKIKELRDTFDA 150
++I+E++D A
Sbjct: 211 SRIREIQDASGA 222
Score = 35.8 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFA 70
LRLLIP + GS+IGKGGS I +++ A + D P ER L I
Sbjct: 193 LRLLIPHILIGSIIGKGGSRIREIQDASGARLNASDACLPLSTERSLVILG 243
>gi|380479025|emb|CCF43264.1| KH domain-containing protein [Colletotrichum higginsianum]
Length = 384
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 20/130 (15%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGLKV 78
+ LR ++ S+ AG +IGK G N+A LR++ KA V+ +R+LTI ++ +
Sbjct: 48 LTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTITGGCQSVSEA 107
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCIIGK 136
V AL E G G+GG+ +++ + I+L++ +Q G IIG+
Sbjct: 108 YSIVARALLE----------------GAPSLGMGGVVQNNGTHPIKLLISHNQMGTIIGR 151
Query: 137 GGTKIKELRD 146
G KIK ++D
Sbjct: 152 QGLKIKHIQD 161
>gi|147807331|emb|CAN73002.1| hypothetical protein VITISV_044056 [Vitis vinifera]
Length = 1121
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 14/137 (10%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIF 69
+++ G P + R+LIP + G +IG+ G +I +L + KA + + D P ER + +
Sbjct: 31 EKWPGWPGENVFRMLIPVQKVGYIIGRKGEHIKKLSEETKARIKILDGPPGTSERAVMVS 90
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
A+ E + PA+D + + + E D + GV RL+V +Q
Sbjct: 91 AKEEPD----APIAPAIDGLLRVHKCIMDVES--DVPSAAGVM------VSTRLLVVAAQ 138
Query: 130 AGCIIGKGGTKIKELRD 146
AG +IGK G IK +++
Sbjct: 139 AGSLIGKQGATIKSIQE 155
>gi|226485615|emb|CAX75227.1| Heterogeneous nuclear ribonucleoprotein K [Schistosoma japonicum]
Length = 297
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 25/27 (92%)
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
D+RL+VH SQAGC+IG+GG KIKELR+
Sbjct: 10 DLRLLVHYSQAGCVIGRGGYKIKELRE 36
>gi|357128987|ref|XP_003566150.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 729
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 21/132 (15%)
Query: 18 PNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASV----TVPDCPGPERILTIFAELE 73
P + RLL S GS+IGKGG+NI ++ D + TVP +R++ I
Sbjct: 392 PEPLTFRLLCSSDKVGSIIGKGGNNIKTIQKDTGCEIKILETVPK--SEDRVIVISGPAH 449
Query: 74 NGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCI 133
G + + PA + I + + R + G + RLIV +Q GC+
Sbjct: 450 PG----DGISPAQNAIL--HVQRRITPPTANNKEGAAIS---------RLIVSPNQVGCL 494
Query: 134 IGKGGTKIKELR 145
+GKGG+ I E+R
Sbjct: 495 LGKGGSIIAEMR 506
>gi|226485613|emb|CAX75226.1| Heterogeneous nuclear ribonucleoprotein K [Schistosoma japonicum]
Length = 297
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 25/27 (92%)
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRD 146
D+RL+VH SQAGC+IG+GG KIKELR+
Sbjct: 10 DLRLLVHYSQAGCVIGRGGYKIKELRE 36
>gi|384490263|gb|EIE81485.1| hypothetical protein RO3G_06190 [Rhizopus delemar RA 99-880]
Length = 426
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 17/133 (12%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD-CPG-PERILTIFAELENGLK 77
++ LR L+ + AG +IGKGG N++ +R+ A V + D PG ERILT+ + K
Sbjct: 78 NISLRSLVGMKDAGLIIGKGGKNVSEIRDSSMARVNISDIVPGAAERILTVVGPVSAVAK 137
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKG 137
V + E + ED N G + + D I++++ ++ G IIGK
Sbjct: 138 AYALVAEKIIE------ENTLAED-----NKGPI----QQDVTIKILILANRMGSIIGKS 182
Query: 138 GTKIKELRDTFDA 150
G+ I+ +++T A
Sbjct: 183 GSVIRSIQETSGA 195
Score = 35.4 bits (80), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFAE---LE 73
DV +++LI + GS+IGK GS I ++ A V+ + P P ER++TI +E
Sbjct: 163 DVTIKILILANRMGSIIGKSGSVIRSIQETSGAKVSAQEEPLPLSTERVVTIHGTPDAIE 222
Query: 74 NGLKVIEEVL 83
+K I ++L
Sbjct: 223 QAVKKIGDIL 232
>gi|356536806|ref|XP_003536925.1| PREDICTED: poly(rC)-binding protein 1-like [Glycine max]
Length = 561
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 11/137 (8%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIF 69
K++ G P + R+L+P + GS+IG+ G I ++ D KA + + D P ER + +
Sbjct: 153 KKWPGWPGENVFRMLVPVQKVGSIIGRKGEFIRKITEDTKARIKILDGPPGTSERAVMVS 212
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
A+ E + PA+D + + + + + G V + RL+V +Q
Sbjct: 213 AKEEPDCSIP----PAVDGLLRVHKQVVNVDPHPADSASGAVRPVVT-----RLLVADTQ 263
Query: 130 AGCIIGKGGTKIKELRD 146
AG +IGK G+ IK +D
Sbjct: 264 AGSLIGKQGSTIKSFQD 280
>gi|413935392|gb|AFW69943.1| hypothetical protein ZEAMMB73_108333 [Zea mays]
Length = 397
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 11/139 (7%)
Query: 13 RFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP----GPERILTI 68
R+ G P RL++P+ G +IG+ G I RL ++ +A V V D P RI+ +
Sbjct: 90 RWPGWPGASVFRLVVPADKVGGIIGRRGDTIKRLCDETRARVRVLDAPHGDGAFSRIVLV 149
Query: 69 FAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQS 128
A E V E+ PA++ + + ED + G + + +RL+V +
Sbjct: 150 SAREE----VEAELSPAMNAAIKIFKHINEIEDIN---SDGTLMAPAPEISSVRLLVPFA 202
Query: 129 QAGCIIGKGGTKIKELRDT 147
QA +IGK G IK ++++
Sbjct: 203 QALHVIGKQGVTIKSIQES 221
>gi|224095794|ref|XP_002310483.1| predicted protein [Populus trichocarpa]
gi|222853386|gb|EEE90933.1| predicted protein [Populus trichocarpa]
Length = 747
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 24/134 (17%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELEN---- 74
V R+L + G VIGKGG+ + L+N+ A++++ P G ER++T+ A EN
Sbjct: 313 VVFRILCNNDRVGGVIGKGGNIVTALQNETGATISIGPKVAGCDERLITVTAS-ENPESR 371
Query: 75 ---GLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAG 131
K + V + E + G G +G +RL+V +Q G
Sbjct: 372 YSAAQKTVVLVFSRVVESVIEKGLDPGSSEG--------------SPVSVRLVVSPNQVG 417
Query: 132 CIIGKGGTKIKELR 145
C++GKGGT I E+R
Sbjct: 418 CLLGKGGTIISEMR 431
>gi|350631260|gb|EHA19631.1| hypothetical protein ASPNIDRAFT_52961 [Aspergillus niger ATCC 1015]
Length = 462
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 19/132 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGLKV 78
+ +R +I S+ A +VIGKGG N++++R A TV D ERILT+ + K
Sbjct: 108 IHIRAVISSQEAATVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSGPQDAAAKA 167
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
++ L+ + D + Y +RL++ G IIGKGG
Sbjct: 168 FGLIIRTLN------------NEPLDAPSTA-----QSKTYPLRLLIPHILIGSIIGKGG 210
Query: 139 TKIKELRDTFDA 150
++I+E++D A
Sbjct: 211 SRIREIQDASGA 222
Score = 35.8 bits (81), Expect = 6.1, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFA 70
LRLLIP + GS+IGKGGS I +++ A + D P ER L I
Sbjct: 193 LRLLIPHILIGSIIGKGGSRIREIQDASGARLNASDACLPLSTERSLVILG 243
>gi|340522569|gb|EGR52802.1| predicted protein [Trichoderma reesei QM6a]
Length = 369
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 20/130 (15%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGLKV 78
+ LR ++ S+ AG +IGKGG N+A LR++ KA V+ +R+LTI + +
Sbjct: 47 LTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVHDRVLTITGGCDAISRA 106
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCIIGK 136
V AL E G G+GG+ +++ + I+L++ +Q G IIG+
Sbjct: 107 YAIVARALLE----------------GAPVVGMGGVVQNNGTHPIKLLISHNQMGTIIGR 150
Query: 137 GGTKIKELRD 146
G KIK ++D
Sbjct: 151 QGLKIKHIQD 160
>gi|218202392|gb|EEC84819.1| hypothetical protein OsI_31905 [Oryza sativa Indica Group]
Length = 617
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 22/130 (16%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV--PDCPGPERILTIFAELENGLK 77
++ R++ + + GS+IGKGGS I L+++ AS+ + P+ ER++ I A EN
Sbjct: 244 EIVFRMICLNEMVGSIIGKGGSTIRALQSETGASIKIIEPNSDSEERVIVISAH-EN--- 299
Query: 78 VIEEVL--PALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIG 135
E++ PA D + + + R E D + RL+V GC++G
Sbjct: 300 --SEMMHSPAQDAVLRVH--SRISESSMDKSSA----------VTARLLVPSQHIGCLLG 345
Query: 136 KGGTKIKELR 145
KGG+ I E+R
Sbjct: 346 KGGSIIAEMR 355
>gi|340728851|ref|XP_003402727.1| PREDICTED: far upstream element-binding protein 1-like [Bombus
terrestris]
Length = 738
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 11/122 (9%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I RL+++ + + P+ G PER+ T+ E + E VL
Sbjct: 114 VPDNMVGLIIGRGGEQITRLQSETGCKIQMAPESGGLPERLCTLTGSREAVNRAKELVLS 173
Query: 85 ALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKEL 144
+++ + G G GG GGL + +++ + G IIGKGG IK+L
Sbjct: 174 IVNQRSRTEGIGD---------MGGSSGGLMSHSGFVEIMIPGPKVGLIIGKGGETIKQL 224
Query: 145 RD 146
++
Sbjct: 225 QE 226
Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats.
Identities = 46/154 (29%), Positives = 69/154 (44%), Gaps = 20/154 (12%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV----PDCPGPER 64
S+F G + VE+ L+P G VIGKGG I +++ + A V D PG +
Sbjct: 292 SSFNHGSGTTDGVEV--LVPRAAVGVVIGKGGDMIKKIQAETGARVQFQQGREDGPGDRK 349
Query: 65 ILTI--FAELENGLKVIEEVLPAL---DEIRQKYGKGRGGEDGGDGYNG-----GG---- 110
+ +E + I+E++ ++ D+ R G G G G N GG
Sbjct: 350 CIVSGKHQAVEQVRQRIQELIDSVMRRDDGRSNIGARSGPRGNGFGNNRNPNEYGGWDRR 409
Query: 111 VGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKEL 144
GG +D + V S+ G IIGKGG IK++
Sbjct: 410 QGGPMQDKIETMFTVPSSKCGIIIGKGGETIKQI 443
Score = 38.5 bits (88), Expect = 0.81, Method: Composition-based stats.
Identities = 36/130 (27%), Positives = 65/130 (50%), Gaps = 9/130 (6%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKAS-VTVPDCPG-----PERILTIFAELENGL 76
+ ++IP G +IGKGG I +L+ A V + + P P RI ++E
Sbjct: 201 VEIMIPGPKVGLIIGKGGETIKQLQEKSGAKMVVIQEGPSQEQEKPLRITGDPQKVEYAK 260
Query: 77 KVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVG-GLGKDDYDIRLIVHQSQAGCIIG 135
+++ E++ A E++ + RG + G+ N G G D + ++V ++ G +IG
Sbjct: 261 QLVYELI-AEKEMQMFHRGARGNDRSGNYSNDSSFNHGSGTTD-GVEVLVPRAAVGVVIG 318
Query: 136 KGGTKIKELR 145
KGG IK+++
Sbjct: 319 KGGDMIKKIQ 328
>gi|384248088|gb|EIE21573.1| hypothetical protein COCSUDRAFT_17393 [Coccomyxa subellipsoidea
C-169]
Length = 311
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 17/144 (11%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG-------PERILTIFAE 71
+LRLL+P+ + G++IGKGG+ I D +A++TV P P+R++ I
Sbjct: 124 KSTQLRLLVPTPLCGAIIGKGGATIRSFAEDSRAAITV--SPQDKQPLGIPDRVVRITGA 181
Query: 72 LENGLKVIEEVLPALDEIRQKYGK------GRGGEDGGDGYNGGG-VGGLGKDDYDIRLI 124
+ L+ + +L L E Y + G GY G + + ++ +
Sbjct: 182 QDQLLRAVALLLTKLVE-SPNYTRFTTSNVSYGPPPQHMGYQQKGYMQPQQQQRMEVTVP 240
Query: 125 VHQSQAGCIIGKGGTKIKELRDTF 148
V +++ G IIGKGG I +L+
Sbjct: 241 VPEARVGAIIGKGGEVISQLKSVI 264
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 24/136 (17%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PGP-ERILTIFA 70
G V + L+ + AGS+IGKGG+NI+ L++ A + + PG ER++
Sbjct: 37 AGEQKVIAKFLMSNAAAGSIIGKGGANISELQSQSGARLQLSRASEFFPGTQERVM---- 92
Query: 71 ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQA 130
L +G + +VL AL I K +G DG + +RL+V
Sbjct: 93 -LASG--SVNQVLTALHLILTKI-QGEQSMMARDGKS-----------TQLRLLVPTPLC 137
Query: 131 GCIIGKGGTKIKELRD 146
G IIGKGG I+ +
Sbjct: 138 GAIIGKGGATIRSFAE 153
>gi|344250996|gb|EGW07100.1| Kinesin-like protein KIF27 [Cricetulus griseus]
Length = 1648
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 32/47 (68%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFK 51
+++ FKR R VELR+L+ S+ AG+VIGKGG NI LR D++
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYQ 73
Score = 42.0 bits (97), Expect = 0.093, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 6/93 (6%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERI 65
++++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP +R+
Sbjct: 70 TDYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRV 129
Query: 66 LTIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
+ I + + +V+E + LD I + KGR
Sbjct: 130 VLIGGKPD---RVVECIKIILDLISESPIKGRA 159
Score = 39.3 bits (90), Expect = 0.53, Method: Composition-based stats.
Identities = 18/29 (62%), Positives = 23/29 (79%)
Query: 118 DYDIRLIVHQSQAGCIIGKGGTKIKELRD 146
D ++RL++HQS AG IIG G KIKELR+
Sbjct: 81 DCELRLLIHQSLAGGIIGVKGAKIKELRE 109
Score = 38.5 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV--PDCPGPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + P +RI+TI
Sbjct: 316 GGP-IITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITI 369
>gi|116180584|ref|XP_001220141.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88185217|gb|EAQ92685.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 485
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 19/132 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGLKV 78
+ +R +I S A ++IGKGG N++++R A TV D ERILT+ +
Sbjct: 125 IHVRAVISSPEAATIIGKGGENVSKIRQMSGAKCTVSDYQKGAVERILTVSG-------I 177
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
++ V A I + GE Y +RL++ G IIGKGG
Sbjct: 178 VDAVAKAFGLIIRTLNNEPLGEPSSQ----------HSKTYPLRLLIPHILIGSIIGKGG 227
Query: 139 TKIKELRDTFDA 150
+IKE+++ A
Sbjct: 228 ARIKEIQEASGA 239
>gi|440636503|gb|ELR06422.1| hypothetical protein GMDG_02138 [Geomyces destructans 20631-21]
Length = 365
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 62/128 (48%), Gaps = 20/128 (15%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGLKVIE 80
LR ++ S+ AG +IGK G N+A LR++ KA V+ +RILTI + K
Sbjct: 50 LRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRILTITGGCDAISKAYA 109
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKD--DYDIRLIVHQSQAGCIIGKGG 138
V AL E G G+GGL + I+L++ +Q G IIG+ G
Sbjct: 110 IVAKALLE----------------GAPMMGMGGLVSTTGTHPIKLLISHNQMGTIIGRQG 153
Query: 139 TKIKELRD 146
KIK ++D
Sbjct: 154 LKIKHIQD 161
>gi|356557593|ref|XP_003547100.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 710
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 20/136 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--PERILTIFAELENGLKV 78
V RLL + G VIGK GS I L+ A + + D P P+RI+ + A+ K+
Sbjct: 45 VAFRLLCNASRIGGVIGKSGSVIKTLQQSTGAKIRIEDAPQELPDRIILVIADAALSGKI 104
Query: 79 I---EEVL------PALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
+ EEV+ AL ++ + + GG+ D +G RL+ +Q
Sbjct: 105 LLRNEEVIEVSKAQEALLKVFDRILRSGGGDRSVD---------VGDRVMSCRLVADAAQ 155
Query: 130 AGCIIGKGGTKIKELR 145
AG +IGKGG ++ ++
Sbjct: 156 AGSVIGKGGKVVERIK 171
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 20/133 (15%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVT----VPDCPGPERILTIFAELENG 75
+V R+L + G VIGKGG+ + L+++ A+++ V +C +R++TI A EN
Sbjct: 318 EVTFRILCSNDRVGGVIGKGGNIVRALQSETGATISIGPAVAECE--DRLITIAAS-ENP 374
Query: 76 LKVIEEVLPALDEIRQKYGKG--RGGEDGGD-GYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
PA + + G E G D G N G + +RL+V SQ GC
Sbjct: 375 E---SRYSPAQKAAVLVFSRSIEVGFEKGLDSGLNKGSI-------VTVRLVVPSSQVGC 424
Query: 133 IIGKGGTKIKELR 145
+IGKGG + E+R
Sbjct: 425 LIGKGGVIVSEMR 437
>gi|47219921|emb|CAF97191.1| unnamed protein product [Tetraodon nigroviridis]
Length = 339
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 20/85 (23%)
Query: 62 PERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDI 121
P+RIL++ A +E K++ +++P L+E + Y+G D ++
Sbjct: 3 PDRILSVNASIETIGKILLKIIPTLEEYQH--------------YSGIDF------DSEL 42
Query: 122 RLIVHQSQAGCIIGKGGTKIKELRD 146
RL++HQS AG IIG G KIKELR+
Sbjct: 43 RLLIHQSLAGGIIGVKGAKIKELRE 67
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 4 FIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP- 60
I L ++ + G D ELRLLI +AG +IG G+ I LR + + ++ + CP
Sbjct: 23 IIPTLEEYQHYSGIDFDSELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPH 82
Query: 61 GPERILTIFAELENGLKVIEEVLPALDE 88
+R++ + + E ++ I+ +L + E
Sbjct: 83 STDRVVLVGGKPERVIECIKVILELVSE 110
Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + D P +RI+TI
Sbjct: 269 GGPV-ITTQVTIPKDLAGSIIGKGGQRIKQIRHECGASIKI-DEPLEGSEDRIITI 322
>gi|85109816|ref|XP_963102.1| hypothetical protein NCU06251 [Neurospora crassa OR74A]
gi|28924753|gb|EAA33866.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 371
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 20/130 (15%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGLKV 78
+ LR ++ S+ AG +IGKGG N+A LR++ KA V+ +R+LTI + K
Sbjct: 50 LTLRAIVSSKEAGVIIGKGGQNVANLRDETGVKAGVSKVVQGVHDRVLTITGGCDAVSKA 109
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGL--GKDDYDIRLIVHQSQAGCIIGK 136
V +L E G G+GG+ + I+L++ +Q G +IG+
Sbjct: 110 YAVVARSLLE----------------GAPSVGMGGVISANGTHPIKLLISHNQMGTVIGR 153
Query: 137 GGTKIKELRD 146
G KIK ++D
Sbjct: 154 QGLKIKHIQD 163
>gi|302697985|ref|XP_003038671.1| hypothetical protein SCHCODRAFT_80836 [Schizophyllum commune H4-8]
gi|300112368|gb|EFJ03769.1| hypothetical protein SCHCODRAFT_80836 [Schizophyllum commune H4-8]
Length = 308
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 61/133 (45%), Gaps = 16/133 (12%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLR--NDFKASVTVPDCPG-PERILTIFAELENGLK 77
+ LR L+ ++ AG +IGKGG N+A LR KA V+ PG ER+LTI E K
Sbjct: 1 MALRALVSTKDAGVIIGKGGKNVAELREVTGVKAGVS-KVVPGVHERVLTINGSPEGIAK 59
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKG 137
+ ++ L G + V IRL+V + G IIG+G
Sbjct: 60 AYQHIIAQLV----------SASAGSPELDASVVA--TNPHTMIRLLVSHNLMGTIIGRG 107
Query: 138 GTKIKELRDTFDA 150
G KIK ++D A
Sbjct: 108 GLKIKAIQDASGA 120
>gi|336469496|gb|EGO57658.1| hypothetical protein NEUTE1DRAFT_116898 [Neurospora tetrasperma
FGSC 2508]
gi|350290860|gb|EGZ72074.1| hypothetical protein NEUTE2DRAFT_144709 [Neurospora tetrasperma
FGSC 2509]
Length = 371
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 20/130 (15%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGLKV 78
+ LR ++ S+ AG +IGKGG N+A LR++ KA V+ +R+LTI + K
Sbjct: 50 LTLRAIVSSKEAGVIIGKGGQNVANLRDETGVKAGVSKVVQGVHDRVLTITGGCDAVSKA 109
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGL--GKDDYDIRLIVHQSQAGCIIGK 136
V +L E G G+GG+ + I+L++ +Q G +IG+
Sbjct: 110 YAVVARSLLE----------------GAPSVGMGGVISANGTHPIKLLISHNQMGTVIGR 153
Query: 137 GGTKIKELRD 146
G KIK ++D
Sbjct: 154 QGLKIKHIQD 163
>gi|356572762|ref|XP_003554535.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 548
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 15/133 (11%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASV----TVPDCPGPERILTIFAELENG 75
D R + P R GSVIG+GG + +LR + KA + TVP C ER++TI++ +
Sbjct: 41 DTVYRYVCPGRKIGSVIGRGGEIVKQLRVETKAKIRIGETVPGC--EERVVTIYSPSDET 98
Query: 76 LKVI---EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
V V PA D + + + + ED + G + +L+V Q GC
Sbjct: 99 NAVEGGGNYVSPAQDALFKVHDR-VVAEDFHGDQDDDGGQQV-----TAKLLVPSDQIGC 152
Query: 133 IIGKGGTKIKELR 145
+IGKGG+ ++ +R
Sbjct: 153 VIGKGGSIVQNIR 165
>gi|390597786|gb|EIN07185.1| hypothetical protein PUNSTDRAFT_53562 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 356
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 19/132 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PG-PERILTIFAELENGLKV 78
+ +R LI ++ A +IGKGG+++ +R A V V + PG PERIL + L+ K
Sbjct: 54 IHMRCLIVTQDASIIIGKGGAHVNEIRQKSGARVVVSESIPGNPERILNVSGPLDAVSKA 113
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
++ +++ + ++ V G I+ ++ S+ G +IGKGG
Sbjct: 114 FGLIVRRIND---------------EPFDSASVPG--SRAVTIKFMIPNSRMGSVIGKGG 156
Query: 139 TKIKELRDTFDA 150
+KIKE+++ A
Sbjct: 157 SKIKEIQEASGA 168
>gi|317032830|ref|XP_001394456.2| KH domain RNA binding protein [Aspergillus niger CBS 513.88]
Length = 444
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 19/128 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGLKV 78
+ +R +I S+ A +VIGKGG N++++R A TV D ERILT+ + K
Sbjct: 108 IHIRAVISSQEAATVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSGPQDAAAKA 167
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
++ L+ + D + Y +RL++ G IIGKGG
Sbjct: 168 FGLIIRTLN------------NEPLDAPSTA-----QSKTYPLRLLIPHILIGSIIGKGG 210
Query: 139 TKIKELRD 146
++I+E++D
Sbjct: 211 SRIREIQD 218
>gi|328774304|gb|EGF84341.1| hypothetical protein BATDEDRAFT_8525 [Batrachochytrium
dendrobatidis JAM81]
Length = 343
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 60/131 (45%), Gaps = 19/131 (14%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRN----DFKASVTVPDCPGPERILTIFAELENG 75
++ LR L+ ++ AG VIGKGG+++A +R S VP ERILT+ L N
Sbjct: 12 EMTLRSLVSTKEAGVVIGKGGASVANVRQIASVKVGVSKVVPSV--SERILTVVGPLPNV 69
Query: 76 LKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIG 135
K + L E Q G D + + IRL+V G IIG
Sbjct: 70 AKAYALIAKNLLESTQTI-TSNGNLDSTE------------ESTAIRLLVAHQLIGSIIG 116
Query: 136 KGGTKIKELRD 146
K G KI+E+++
Sbjct: 117 KAGAKIREIQE 127
>gi|336273542|ref|XP_003351525.1| hypothetical protein SMAC_00067 [Sordaria macrospora k-hell]
gi|380095805|emb|CCC05851.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 372
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 20/128 (15%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGLKVIE 80
LR ++ S+ AG +IGKGG N+A LR++ KA V+ +R+LTI + K
Sbjct: 52 LRAIVSSKEAGVIIGKGGQNVANLRDETGVKAGVSKVVQGVHDRVLTITGGCDAVSKAYA 111
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGL--GKDDYDIRLIVHQSQAGCIIGKGG 138
V +L E G G+GG+ + ++L++ +Q G +IG+ G
Sbjct: 112 AVARSLLE----------------GAPSVGMGGVISANGTHPLKLLISHNQMGTVIGRQG 155
Query: 139 TKIKELRD 146
KIK ++D
Sbjct: 156 LKIKHIQD 163
>gi|351713497|gb|EHB16416.1| Far upstream element-binding protein 2, partial [Heterocephalus
glaber]
Length = 522
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 67/124 (54%), Gaps = 16/124 (12%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 69 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 124
Query: 85 ALDEIRQKYGKGRGGEDG--GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + ++ +++ +AG +IGKGG IK
Sbjct: 125 MLDDI---VSRGRGGPPGQFHDSANGGQNGTVQEE-----IMIPAGKAGLVIGKGGETIK 176
Query: 143 ELRD 146
+L++
Sbjct: 177 QLQE 180
>gi|225464083|ref|XP_002269250.1| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
vinifera]
Length = 648
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 15/131 (11%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV--PDCPGPERILTIFAELENGL 76
+V ++L + G VIGKGG+ + L+N+ AS++V P ER++TI A EN
Sbjct: 297 QEVIFKILCSNDRVGGVIGKGGTIVKALQNEAGASISVGAPVAECDERLITITAS-ENPE 355
Query: 77 KVIEEVLPALDEIRQKYGKG--RGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCII 134
PA + + + + G E G D + G RL+V +Q GC++
Sbjct: 356 ---SRYSPAQNGVILVFNRSIEAGIEKGLDSGSKG-------SPVSARLVVPSNQVGCLM 405
Query: 135 GKGGTKIKELR 145
GKGGT I E+R
Sbjct: 406 GKGGTIISEMR 416
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 16/134 (11%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP--ERILTIFAELENGLKV 78
V RLL + G VIGK G + +L++D A + V D P R++ + A ++
Sbjct: 51 VAFRLLCHASRIGGVIGKSGVIVKQLQSDTGARIRVEDSPSTSDHRVILVIAPASVNRRI 110
Query: 79 I-----EEV--LPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAG 131
EEV A + + + + + DG GGV RL+ SQ G
Sbjct: 111 ALQGSSEEVEASAAQEAVLRVFERILEVAAVVDGVPPGGV-------VSCRLLAETSQVG 163
Query: 132 CIIGKGGTKIKELR 145
+IGKGG ++++R
Sbjct: 164 SVIGKGGKVVEKIR 177
>gi|402086578|gb|EJT81476.1| Poly(rC)-binding protein 3 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 486
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 19/132 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGLKV 78
+ +R +I S A +VIGKGG N++++R A TV D ERILT+ ++ K
Sbjct: 126 IHIRAVISSPEAATVIGKGGENVSKIRQLSGAKCTVSDYQKGAVERILTVSGIVDAVAKA 185
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
++ L+ E D + Y +RL++ G IIGKGG
Sbjct: 186 FGLIIRTLNN-----------EPLSDASSA------HSKTYPLRLLIPHILIGSIIGKGG 228
Query: 139 TKIKELRDTFDA 150
+IKE+++ A
Sbjct: 229 ARIKEIQEASGA 240
>gi|47213422|emb|CAF94921.1| unnamed protein product [Tetraodon nigroviridis]
Length = 381
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 30/42 (71%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFK 51
+FKR R VELR+L+ S+ AG+VIGKGG NI LR D++
Sbjct: 32 SFKRSRNSDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYQ 73
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERI 65
++++++ G D ELRLLI +AGS+IG G+ I LR + K S+ + CP +R+
Sbjct: 70 TDYQQYSGMDFDCELRLLIHQSLAGSIIGVKGAKIKELRENTKTSIKLFQECCPQSTDRV 129
Query: 66 LTIFAELENGLKVIEEVL 83
+ + ++E ++ I+ +L
Sbjct: 130 VLVGGKMERVVECIKTML 147
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 23/29 (79%)
Query: 118 DYDIRLIVHQSQAGCIIGKGGTKIKELRD 146
D ++RL++HQS AG IIG G KIKELR+
Sbjct: 81 DCELRLLIHQSLAGSIIGVKGAKIKELRE 109
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTI 68
GGP V ++ IP +AGS+IGKGG I ++R+D A++ + D P +RI+TI
Sbjct: 311 GGPV-VTTQVTIPKDLAGSIIGKGGQRIKQIRHDSGAAIKI-DEPLEGSEDRIITI 364
>gi|21355075|ref|NP_649767.1| CG7878 [Drosophila melanogaster]
gi|7298989|gb|AAF54192.1| CG7878 [Drosophila melanogaster]
gi|15291973|gb|AAK93255.1| LD33749p [Drosophila melanogaster]
gi|220946004|gb|ACL85545.1| CG7878-PA [synthetic construct]
gi|220955750|gb|ACL90418.1| CG7878-PA [synthetic construct]
Length = 703
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 17/121 (14%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENG 75
GG D L I S + G VIG+GGSNI+R++NDF V + C + I+ I +++
Sbjct: 86 GGGGDFSESLSIASEMVGKVIGRGGSNISRIQNDFNVRVKLDKC---DLIVKITGSIQSN 142
Query: 76 LKVIEEVLPALDEIRQKY------GKGRGGEDGGDG--YNGGGVGGLGKDDYDIRLIVHQ 127
V+ A++ +R++ G+ R D G Y+GGG + Y+ +
Sbjct: 143 ------VIDAINHVRKQVTNSGDRGQDRDNRDHGSNERYDGGGYDRYKGNSYEFNPTSSE 196
Query: 128 S 128
S
Sbjct: 197 S 197
>gi|356504987|ref|XP_003521274.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 529
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 19/144 (13%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--PERIL 66
+ K++ G P + R+L+P + GS+IG+ G I ++ + KA + + D P ER +
Sbjct: 114 NEIKKWPGWPGENVFRMLVPVQKVGSIIGRKGEFIKKITEETKARIKILDGPPGISERAV 173
Query: 67 TIFAELENGLKVIEEVLPALDEI----RQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIR 122
+ A+ E + PA+D + +Q R D V R
Sbjct: 174 MVSAKEEPD----RPIPPAIDGLLRVHKQVINVDRDLVDSALAAGRSVV---------TR 220
Query: 123 LIVHQSQAGCIIGKGGTKIKELRD 146
L+V +QAG +IGK G+ IK ++D
Sbjct: 221 LLVADTQAGSLIGKQGSTIKSIQD 244
>gi|443700302|gb|ELT99335.1| hypothetical protein CAPTEDRAFT_173082 [Capitella teleta]
Length = 552
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 71/136 (52%), Gaps = 23/136 (16%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD----CPG-PERILTIFAELEN 74
++ L++L+PS AG++IGKGG I ++ + A+V + PG ER+ + L++
Sbjct: 45 NISLKVLVPSIAAGAIIGKGGETITDIQKETGATVKMSKNNDFYPGTSERVCLVNGTLDS 104
Query: 75 GLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYD----IRLIVHQSQA 130
KVI + ++ IR+K N G K +Y+ ++++V S A
Sbjct: 105 VRKVIVFI---MERIREKPDP-----------NPKPCEGEMKANYERHKQMKILVPNSTA 150
Query: 131 GCIIGKGGTKIKELRD 146
G +IGKGG I++++D
Sbjct: 151 GMVIGKGGAFIRQIKD 166
Score = 43.1 bits (100), Expect = 0.041, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVP----DCPGPERILTIFAELENGLK 77
++++L+P+ AG VIGKGG+ I ++++D A V V D PER +TI + E +
Sbjct: 140 QMKILVPNSTAGMVIGKGGAFIRQIKDDSGAYVQVSQKSKDMSLPERCVTIAGDTEQNRE 199
Query: 78 VIEEVLPALDEIRQ 91
I+ VL + E Q
Sbjct: 200 AIDLVLEKIMEDPQ 213
>gi|408389667|gb|EKJ69103.1| hypothetical protein FPSE_10721 [Fusarium pseudograminearum CS3096]
Length = 474
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 19/132 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGLKV 78
+ +R +I S A +VIGKGG N++ +R A TV D ERILT+ ++ K
Sbjct: 113 IHVRAVISSPEAATVIGKGGENVSNIRKLSNAKCTVSDYQKGAVERILTVSGIVDAVAKA 172
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
++ L+ + N Y +RL++ G IIGKGG
Sbjct: 173 FGLIIRTLNN---------------EPLNESSTA--SSKTYPLRLLIPHILIGSIIGKGG 215
Query: 139 TKIKELRDTFDA 150
+I+E++D A
Sbjct: 216 ARIREIQDASGA 227
>gi|357615456|gb|EHJ69667.1| putative igf2 mRNA binding protein [Danaus plexippus]
Length = 599
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 24/135 (17%)
Query: 18 PNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV--PDCPGP-ERILTIFAELEN 74
P D LRLL+ S + G++IG+ GS I + +A V V D G E+ +TI+ +N
Sbjct: 136 PTDFPLRLLVQSDMVGAIIGRQGSTIRLITQQSRARVDVHRKDNVGSLEKAITIYGNPDN 195
Query: 75 GLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCII 134
+ +L + + KG + ++++ H + G II
Sbjct: 196 CTNACKRILEVMQQEANNTNKG---------------------EICLKILAHNNLIGRII 234
Query: 135 GKGGTKIKELRDTFD 149
GKGG IK + D
Sbjct: 235 GKGGNTIKRIMQETD 249
Score = 35.4 bits (80), Expect = 8.8, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVP-----DCPGPERILTIFAELEN 74
++ L++L + + G +IGKGG+ I R+ + +TV + ERI+T+ +EN
Sbjct: 218 EICLKILAHNNLIGRIIGKGGNTIKRIMQETDTKITVSSINDINSFNLERIITVKGTIEN 277
Query: 75 GLKVIEEVLPALDEIRQKY 93
K ++ L RQ Y
Sbjct: 278 MAKAESQISAKL---RQSY 293
>gi|313217829|emb|CBY41240.1| unnamed protein product [Oikopleura dioica]
Length = 101
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 14/97 (14%)
Query: 50 FKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGG 109
++A + +P+ PER+L I N + + ++ + EI + E+ +NG
Sbjct: 1 YQAIINIPEARAPERVLKICV---NSRETLHTIVSQIAEILK-------NENAKGSHNGR 50
Query: 110 GVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRD 146
G + ++R++V SQAG IIG G+ +K LR+
Sbjct: 51 RKEG----ETELRILVQSSQAGAIIGTKGSTVKNLRE 83
>gi|336265613|ref|XP_003347577.1| hypothetical protein SMAC_04885 [Sordaria macrospora k-hell]
gi|380096444|emb|CCC06492.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 469
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 19/132 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGLKV 78
+ +R +I S A ++IGKGG N++++R A TV D ERILT+ V
Sbjct: 125 IHVRSVISSPEAATIIGKGGENVSKIREMSNAKCTVSDYQKGAVERILTVSG-------V 177
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
++ V A I + E Y +RL++ G IIGKGG
Sbjct: 178 VDAVAKAFGLIIRTLNNEPLAEPSNT----------HSKTYPLRLLIPHVLIGSIIGKGG 227
Query: 139 TKIKELRDTFDA 150
+IKE+++ A
Sbjct: 228 ARIKEIQEASGA 239
>gi|134079139|emb|CAK45951.1| unnamed protein product [Aspergillus niger]
Length = 421
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 19/128 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGLKV 78
+ +R +I S+ A +VIGKGG N++++R A TV D ERILT+ + K
Sbjct: 108 IHIRAVISSQEAATVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSGPQDAAAKA 167
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
++ L+ + D + Y +RL++ G IIGKGG
Sbjct: 168 FGLIIRTLN------------NEPLDAPSTA-----QSKTYPLRLLIPHILIGSIIGKGG 210
Query: 139 TKIKELRD 146
++I+E++D
Sbjct: 211 SRIREIQD 218
>gi|392558575|gb|EIW51762.1| hypothetical protein TRAVEDRAFT_156921 [Trametes versicolor
FP-101664 SS1]
Length = 378
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 19/133 (14%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PG-PERILTIFAELENGLK 77
++ +R LI ++ A +IGK GS++ +R A V V + PG PERIL + L+ K
Sbjct: 62 NIHMRCLIVTQDASIIIGKAGSHVNEIREKSGARVVVSESIPGNPERILNVSGPLDAVSK 121
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKG 137
++ +++ + ++ V G I+ ++ S+ G +IGKG
Sbjct: 122 AFGLIVRRIND---------------EPFDKPSVPG--SRAVTIKFMIPNSRMGSVIGKG 164
Query: 138 GTKIKELRDTFDA 150
GTKIKE+++ A
Sbjct: 165 GTKIKEIQEASGA 177
>gi|189237154|ref|XP_973939.2| PREDICTED: similar to igf2 mRNA binding protein, putative
[Tribolium castaneum]
Length = 1116
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 21/135 (15%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV--PDCPGP-ERILTIFAELENGL 76
D LR+L+ S + G++IG+ GS I ++ +A V V D G E+ +TI+ EN
Sbjct: 129 DFPLRILVQSDMVGAIIGRQGSTIRQITQQTRARVDVHRKDNVGSLEKAITIYGNPENCT 188
Query: 77 KVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDI--RLIVHQSQAGCII 134
+ +L + + KG K Y+I +++ H + G II
Sbjct: 189 NACKRILEVMQQEANNTNKGYA----------------KKYYYEICLKILAHNNLIGRII 232
Query: 135 GKGGTKIKELRDTFD 149
GKGG IK + D
Sbjct: 233 GKGGNTIKRIMQETD 247
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 57/137 (41%), Gaps = 26/137 (18%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASV-------TVPDCPGPERILTI 68
GG + L IP+ G++IG GS+I + ASV T P ER +TI
Sbjct: 345 GGDSQETTYLYIPNNAVGAIIGTKGSHIRNIIRFSGASVKIAPIDETKPQETQNERRVTI 404
Query: 69 FAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQS 128
E K + +++R++ G V G + ++V S
Sbjct: 405 VGSPEAQWKAQYLIF---EKMREE----------------GFVAGSDDVRLTVEIMVPSS 445
Query: 129 QAGCIIGKGGTKIKELR 145
Q G IIGKGG ++EL+
Sbjct: 446 QVGRIIGKGGQNVRELQ 462
>gi|302803919|ref|XP_002983712.1| hypothetical protein SELMODRAFT_445677 [Selaginella moellendorffii]
gi|300148549|gb|EFJ15208.1| hypothetical protein SELMODRAFT_445677 [Selaginella moellendorffii]
Length = 668
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 21/136 (15%)
Query: 18 PNDVEL--RLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PGPERILTIFAELEN 74
P D EL R+L PS G++IGK I L+ + A + VPD PG E + I + +E+
Sbjct: 342 PMDEELVFRILCPSEKIGNIIGKF---IQTLQEETGAKINVPDAVPGCEERVIIVSAVES 398
Query: 75 GLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCII 134
+++ PA + + K R +DGG+ + RL+V + GC++
Sbjct: 399 P---DDDLSPAQEAVFHIQDKLR--DDGGET----------SERVVTRLLVPSNHVGCLL 443
Query: 135 GKGGTKIKELRDTFDA 150
GKGG I E+R++ A
Sbjct: 444 GKGGNIISEMRNSTRA 459
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 64/157 (40%), Gaps = 35/157 (22%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PGP-ERILTIFA---------- 70
R+L P+ GSVIGKGGS I LR A + + D PG ER++ I A
Sbjct: 62 FRILCPASRIGSVIGKGGSIIKTLRQQTGAKIKIADAIPGSDERVIIIGAFDAEGGGDED 121
Query: 71 ---------------------ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGG 109
E NG V AL ++ + ED D +
Sbjct: 122 YPAGSGGGSAAALDKDDRAMDEYTNGRDVACPAQLALFKVHSRILDADKYEDDLD--DSD 179
Query: 110 GVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRD 146
V + R++V ++Q GC++GK G I+++R+
Sbjct: 180 SVEEDLSEKVVTRMLVPENQVGCLLGKKGRIIEQMRE 216
Score = 35.4 bits (80), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 10/70 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
V RLL+PS G ++GKGG+ I+ +RN +A + V D R L+N +
Sbjct: 428 VVTRLLVPSNHVGCLLGKGGNIISEMRNSTRAIIRVLD-----REQLPLCALDN-----D 477
Query: 81 EVLPALDEIR 90
EV+ L EIR
Sbjct: 478 EVVQVLGEIR 487
>gi|302814720|ref|XP_002989043.1| hypothetical protein SELMODRAFT_10869 [Selaginella moellendorffii]
gi|300143144|gb|EFJ09837.1| hypothetical protein SELMODRAFT_10869 [Selaginella moellendorffii]
Length = 630
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 21/136 (15%)
Query: 18 PNDVEL--RLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PGPERILTIFAELEN 74
P D EL R+L PS G++IGK I L+ + A + VPD PG E + I + +E+
Sbjct: 282 PMDEELVFRILCPSEKIGNIIGKF---IQTLQEETGAKINVPDAVPGCEERVIIVSAVES 338
Query: 75 GLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCII 134
+++ PA + + K R +DGG+ + RL+V + GC++
Sbjct: 339 P---DDDLSPAQEAVFHIQDKLR--DDGGET----------SERVVTRLLVPSNHVGCLL 383
Query: 135 GKGGTKIKELRDTFDA 150
GKGG I E+R++ A
Sbjct: 384 GKGGNIISEMRNSTRA 399
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 64/157 (40%), Gaps = 35/157 (22%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PGP-ERILTIFA---------- 70
R+L P+ GSVIGKGGS I LR A + + D PG ER++ I A
Sbjct: 2 FRILCPASRIGSVIGKGGSIIKTLRQQTGAKIKIADAIPGSDERVIIIGAFDAEGGGDED 61
Query: 71 ---------------------ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGG 109
E NG V AL ++ + ED D +
Sbjct: 62 YPAGSGGGAPAALDKDDRAMDEYTNGRDVACPAQLALFKVHSRILDADKYEDDLD--DSD 119
Query: 110 GVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRD 146
V + R++V ++Q GC++GK G I+++R+
Sbjct: 120 SVEEDLSEKVVTRMLVPENQVGCLLGKKGRIIEQMRE 156
Score = 35.4 bits (80), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 10/70 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
V RLL+PS G ++GKGG+ I+ +RN +A + V D R L+N +
Sbjct: 368 VVTRLLVPSNHVGCLLGKGGNIISEMRNSTRAIIRVLD-----REQLPLCALDN-----D 417
Query: 81 EVLPALDEIR 90
EV+ L EIR
Sbjct: 418 EVVQVLGEIR 427
>gi|297735516|emb|CBI17956.3| unnamed protein product [Vitis vinifera]
Length = 433
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 14/140 (10%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIF 69
+++ G P + R+LIP + G +IG+ G +I +L + KA + + D P ER + +
Sbjct: 31 EKWPGWPGENVFRMLIPVQKVGYIIGRKGEHIKKLSEETKARIKILDGPPGTSERAVMVS 90
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
A+ E + PA+D + + + E D + GV RL+V +Q
Sbjct: 91 AKEEPDAP----IAPAIDGLLRVHKCIMDVES--DVPSAAGV------MVSTRLLVVAAQ 138
Query: 130 AGCIIGKGGTKIKELRDTFD 149
AG +IGK G IK +++ +
Sbjct: 139 AGSLIGKQGATIKSIQEASN 158
>gi|357159179|ref|XP_003578365.1| PREDICTED: poly(rC)-binding protein 2-like [Brachypodium
distachyon]
Length = 629
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 46/152 (30%), Positives = 70/152 (46%), Gaps = 34/152 (22%)
Query: 3 FFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP 60
FFI+Q ++ R++ + + G +IGKGG+ I L++D ASV V D
Sbjct: 247 FFIEQ------------EIVFRMICLNEMVGGIIGKGGATIRALQSDTGASVKVIDAVAD 294
Query: 61 GPERILTIFAELENGLKVIEEVL--PALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD 118
ER++ I A EN E++ PA D + + Y R E D +
Sbjct: 295 SDERVIVISAR-EN-----SEMMHSPAQDAVLRVY--SRISEASMDKSSA---------- 336
Query: 119 YDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
RL+V GC++GKGG+ I E+R+ A
Sbjct: 337 VPARLLVPSQHIGCLLGKGGSIIAEMRNVTGA 368
Score = 36.6 bits (83), Expect = 3.9, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
V RLL+PS+ G ++GKGGS IA +RN AS+ +
Sbjct: 337 VPARLLVPSQHIGCLLGKGGSIIAEMRNVTGASIRI 372
>gi|222641854|gb|EEE69986.1| hypothetical protein OsJ_29891 [Oryza sativa Japonica Group]
Length = 609
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 22/130 (16%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV--PDCPGPERILTIFAELENGLK 77
++ R++ + + GS+IGKGGS I L+++ AS+ + P+ ER++ I A EN
Sbjct: 236 EIVFRMICLNEMVGSIIGKGGSTIRALQSETGASIKIIEPNSDSEERVIVISAH-EN--- 291
Query: 78 VIEEVL--PALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIG 135
E++ PA D + + + R E D + RL+V GC++G
Sbjct: 292 --SEMMHSPAQDAVLRVH--SRISESSMDKSSA----------VTARLLVPSQHIGCLLG 337
Query: 136 KGGTKIKELR 145
KGG+ I E+R
Sbjct: 338 KGGSIIAEMR 347
>gi|383858850|ref|XP_003704912.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 1-like
[Megachile rotundata]
Length = 624
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 24/137 (17%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV--PDCPGP-ERILTIFAEL 72
G D LR+L+ S + G++IG+ GS I ++ +A V V D G E+ +TI+
Sbjct: 182 GRQTDFPLRILVQSDMVGAIIGRQGSTIRQITQMTRARVDVHRKDNVGSLEKAITIYGNP 241
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
EN +++L + + KG + ++++ H + G
Sbjct: 242 ENCTNACKKILEVMQQEANSINKG---------------------EITLKILAHNNLIGR 280
Query: 133 IIGKGGTKIKELRDTFD 149
IIGKGGT IK + D
Sbjct: 281 IIGKGGTTIKRIMQDTD 297
Score = 35.8 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVP-----DCPGPERILTIFAELEN 74
++ L++L + + G +IGKGG+ I R+ D +TV + ERI+T+ +EN
Sbjct: 266 EITLKILAHNNLIGRIIGKGGTTIKRIMQDTDTKITVSSINDINSFNLERIITVKGTIEN 325
Query: 75 GLKVIEEVLPALDEIRQKY 93
K E ++ + ++RQ Y
Sbjct: 326 MSKA-ESMISS--KLRQSY 341
>gi|195037653|ref|XP_001990275.1| GH18325 [Drosophila grimshawi]
gi|193894471|gb|EDV93337.1| GH18325 [Drosophila grimshawi]
Length = 684
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 11/89 (12%)
Query: 25 LLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLP 84
L IPS++ G +IG+GGSNI R++ND+ + V E I+T+ + V
Sbjct: 71 LKIPSQMVGRIIGRGGSNIIRIQNDYSVHINVDKV---ELIVTVSGNFG------KNVSD 121
Query: 85 ALDEIRQKYGKGRGGEDGGDGYNGGGVGG 113
A++E+R++ GG G + GG VGG
Sbjct: 122 AINELRKQVNSDGGG--GRERSYGGDVGG 148
>gi|367027192|ref|XP_003662880.1| hypothetical protein MYCTH_2304021 [Myceliophthora thermophila ATCC
42464]
gi|347010149|gb|AEO57635.1| hypothetical protein MYCTH_2304021 [Myceliophthora thermophila ATCC
42464]
Length = 374
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 20/132 (15%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGL 76
+ LR ++ S+ AG +IGKGG N+A LR + KA V+ +R+LTI E
Sbjct: 48 TQLTLRAIVSSKEAGVIIGKGGKNVADLREETGVKAGVSKVVQGVYDRVLTISGGCEAIS 107
Query: 77 KVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCII 134
+ V +L E G G+GG+ +++ + I+L++ +Q G II
Sbjct: 108 RAYSVVARSLLE----------------GAPTMGMGGVIQNNGTHPIKLLISHNQMGTII 151
Query: 135 GKGGTKIKELRD 146
G+ G KIK ++D
Sbjct: 152 GRQGLKIKYIQD 163
>gi|380478963|emb|CCF43298.1| KH domain-containing protein [Colletotrichum higginsianum]
Length = 469
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 19/132 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGLKV 78
+ +R +I S A +VIGKGG N++ +R A TV D ERILT+ ++ K
Sbjct: 111 IHIRAVISSPEAATVIGKGGENVSNIRKMSGAKCTVSDYQKGAVERILTVSGVVDAAAKA 170
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
++ L+ + + + Y +RL++ G IIGKGG
Sbjct: 171 FGLIIRTLNN--EPLAEPSSAQ---------------SKTYPLRLLIPHILIGSIIGKGG 213
Query: 139 TKIKELRDTFDA 150
+I+E+++ A
Sbjct: 214 ARIREIQEASGA 225
>gi|429859891|gb|ELA34647.1| kh domain rna binding protein [Colletotrichum gloeosporioides Nara
gc5]
Length = 471
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 19/132 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGLKV 78
+ +R +I S A +VIGKGG N++ +R A TV D ERILT+ ++ K
Sbjct: 114 IHIRAVISSPEAATVIGKGGENVSNIRKMSGAKCTVSDYQKGAVERILTVSGVVDAAAKA 173
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
++ L+ + + + Y +RL++ G IIGKGG
Sbjct: 174 FGLIIRTLNN--EPLAEPSSAQ---------------SKTYPLRLLIPHILIGSIIGKGG 216
Query: 139 TKIKELRDTFDA 150
+I+E+++ A
Sbjct: 217 ARIREIQEASGA 228
>gi|359479585|ref|XP_002275698.2| PREDICTED: uncharacterized protein LOC100266515 [Vitis vinifera]
Length = 858
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 14/137 (10%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIF 69
+++ G P + R+LIP + G +IG+ G +I +L + KA + + D P ER + +
Sbjct: 31 EKWPGWPGENVFRMLIPVQKVGYIIGRKGEHIKKLSEETKARIKILDGPPGTSERAVMVS 90
Query: 70 AELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
A+ E + PA+D + + + E D + GV RL+V +Q
Sbjct: 91 AKEEPD----APIAPAIDGLLRVHKCIMDVES--DVPSAAGVM------VSTRLLVVAAQ 138
Query: 130 AGCIIGKGGTKIKELRD 146
AG +IGK G IK +++
Sbjct: 139 AGSLIGKQGATIKSIQE 155
>gi|449449385|ref|XP_004142445.1| PREDICTED: RNA-binding protein Nova-2-like [Cucumis sativus]
gi|449527683|ref|XP_004170839.1| PREDICTED: RNA-binding protein Nova-2-like [Cucumis sativus]
Length = 326
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 60/132 (45%), Gaps = 32/132 (24%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKA--------SVTVPDCPG-PERILTIFAELE 73
+R L+ + AGSVIGKGGS I NDF++ S PG +RI+ + +
Sbjct: 37 IRFLVSNAAAGSVIGKGGSTI----NDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSIN 92
Query: 74 NGLKVIEEVLPA-LDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
LK +E VL L E+ E+G D + +RLIV S G
Sbjct: 93 EILKAMELVLAKLLSELH--------AEEGDD----------VEPRTKVRLIVPHSSCGA 134
Query: 133 IIGKGGTKIKEL 144
IIGKGG+ IK
Sbjct: 135 IIGKGGSTIKSF 146
Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 19 NDVE----LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD-----CPGPERILTIF 69
+DVE +RL++P G++IGKGGS I D +A + + +R++T+
Sbjct: 115 DDVEPRTKVRLIVPHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMASTDRLVTLS 174
Query: 70 AELENGLKVIEEVLPALDE 88
+E ++ + ++ L E
Sbjct: 175 GTIEEQMRATDLIVSKLSE 193
>gi|358254874|dbj|GAA56501.1| heterogeneous nuclear ribonucleoprotein K [Clonorchis sinensis]
Length = 546
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 18/29 (62%), Positives = 25/29 (86%)
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRDTF 148
D R++VH+SQAG +IG+GG +IKELRD +
Sbjct: 42 DYRILVHESQAGSVIGRGGERIKELRDKY 70
Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 11/99 (11%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASV-TVPDCPGP---ERILTIFAELENGL 76
++ R+L+ AGSVIG+GG I LR+ ++ V V P +R++ + AE EN +
Sbjct: 41 LDYRILVHESQAGSVIGRGGERIKELRDKYRMRVIKVYQLLAPMSTDRVVQMVAEPENAI 100
Query: 77 KVIEEVLPALDEI-----RQKYGKGRGGEDGGDGYNGGG 110
++ V+ A++ R+ Y E D N GG
Sbjct: 101 ACLKSVVEAVESAPPRGRREDYDAANFCE--ADALNYGG 137
>gi|356550877|ref|XP_003543809.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 561
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 15/133 (11%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASV----TVPDCPGPERILTIFAELENG 75
D R + P R GSVIG+GG + +LR + KA + TVP C ER++TI+ +
Sbjct: 41 DTVYRYVCPGRKIGSVIGRGGEIVKQLRVETKAKIRIGETVPGC--EERVVTIYGPSDET 98
Query: 76 LKVI---EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
V V PA D + + + + ED + G + +L+V Q GC
Sbjct: 99 NAVEGGGNYVSPAQDALFKVHDR-VVAEDFHGDQDDDGGQQV-----TAKLLVPSDQIGC 152
Query: 133 IIGKGGTKIKELR 145
+IGKGG+ ++ +R
Sbjct: 153 VIGKGGSIVQNIR 165
>gi|449525363|ref|XP_004169687.1| PREDICTED: KH domain-containing protein At4g18375-like, partial
[Cucumis sativus]
Length = 531
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 17/136 (12%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFA------- 70
V R+L P V GSVIGK G I +R + +A + V D P P +R++TIF
Sbjct: 36 VVYRILCPDEVIGSVIGKSGKVINSIRQETRAKIKVVD-PFPGAKDRVITIFCFVKDKED 94
Query: 71 -ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
E+++ + + A D + + + + G + +D ++++ SQ
Sbjct: 95 VEVDDEFNDRQTLCAAQDALLKVHAAIANAL-----ASAGDLDRKQRDKEQCQILIPSSQ 149
Query: 130 AGCIIGKGGTKIKELR 145
+ +IGK G+ IK+LR
Sbjct: 150 SANVIGKAGSTIKKLR 165
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 58/143 (40%), Gaps = 27/143 (18%)
Query: 14 FRGGPNDVEL--RLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTI- 68
G P EL R+L P G VIGKGG I +R A V V D E I+TI
Sbjct: 299 ISGHPPSEELVVRVLCPFDNIGRVIGKGGGTIKSIRQASGARVEVDDTKRDCDECIITIS 358
Query: 69 -FAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQ 127
F L++ + E + L E K GG +RL++
Sbjct: 359 SFESLDDLKSMAVETVLLLQE---KINDDEGGT------------------VIMRLLIPS 397
Query: 128 SQAGCIIGKGGTKIKELRDTFDA 150
GCIIGK G+ I E+R + A
Sbjct: 398 KVIGCIIGKSGSIINEIRKSTRA 420
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
V +RLLIPS+V G +IGK GS I +R +A + +
Sbjct: 389 VIMRLLIPSKVIGCIIGKSGSIINEIRKSTRADIRI 424
>gi|431921619|gb|ELK18971.1| Poly(rC)-binding protein 2 [Pteropus alecto]
Length = 446
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 14/114 (12%)
Query: 37 GKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEIRQKYGKG 96
GK G ++ ++R + A + + + PERI+T+ K ++ L+E
Sbjct: 22 GKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEE-------- 73
Query: 97 RGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
D K +RL+V SQ G +IGKGG KIKE+R++ A
Sbjct: 74 ----DISSSMTNSTAAS--KPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGA 121
>gi|361132042|gb|EHL03657.1| putative Poly(rC)-binding protein 2 [Glarea lozoyensis 74030]
Length = 481
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 19/132 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGLKV 78
+ +R +I S A +VIGKGG N++ +R A TV + ERILT+ ++ K
Sbjct: 119 IHIRAVITSAEAATVIGKGGENVSLIRKMSGAKCTVSEYQKGAVERILTVSGVVDAAAKA 178
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
++ L+ ++ K E Y +RL++ G IIGKGG
Sbjct: 179 FGLIIRTLNN--EELDKASSAE---------------SRTYPLRLLIPHILIGSIIGKGG 221
Query: 139 TKIKELRDTFDA 150
+I+E+++ A
Sbjct: 222 MRIREIQEASGA 233
>gi|390347463|ref|XP_792931.3| PREDICTED: poly(rC)-binding protein 3-like [Strongylocentrotus
purpuratus]
Length = 369
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 5 IQQLSNFKRFRGGPND-VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP- 62
+Q LSN G P V LRL++P+ GS+IGKGGS I +R AS+TV P
Sbjct: 1 MQDLSNSVLSPGTPKPPVSLRLIVPTSQCGSLIGKGGSKIKDIRETTSASITVASEMLPS 60
Query: 63 --ERILTIFAELENGLKVIEEV 82
ER +TI E K I +V
Sbjct: 61 STERAVTISGTPEAITKAIYQV 82
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 113 GLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
G K +RLIV SQ G +IGKGG+KIK++R+T A
Sbjct: 12 GTPKPPVSLRLIVPTSQCGSLIGKGGSKIKDIRETTSA 49
>gi|350412234|ref|XP_003489579.1| PREDICTED: far upstream element-binding protein 1-like [Bombus
impatiens]
Length = 736
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 11/122 (9%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I RL+++ + + P+ G PER+ T+ E + E VL
Sbjct: 114 VPDNMVGLIIGRGGEQITRLQSETGCKIQMAPESGGLPERLCTLTGSREAVNRAKELVLS 173
Query: 85 ALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKEL 144
+++ + G G GG GG+ + +++ + G IIGKGG IK+L
Sbjct: 174 IVNQRSRTEGIGD---------MGGSSGGIMSHSGFVEIMIPGPKVGLIIGKGGETIKQL 224
Query: 145 RD 146
++
Sbjct: 225 QE 226
Score = 40.8 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 46/154 (29%), Positives = 69/154 (44%), Gaps = 20/154 (12%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV----PDCPGPER 64
S+F G + VE+ L+P G VIGKGG I +++ + A V D PG +
Sbjct: 292 SSFNHGSGTTDGVEV--LVPRAAVGVVIGKGGDMIKKIQAETGARVQFQQGREDGPGDRK 349
Query: 65 ILTI--FAELENGLKVIEEVLPAL---DEIRQKYGKGRGGEDGGDGYNG-----GG---- 110
+ +E + I+E++ ++ D+ R G G G G N GG
Sbjct: 350 CIVSGKHQAVEQVRQRIQELIDSVMRRDDGRSNIGARSGPRGNGFGNNRNPNEYGGWDRR 409
Query: 111 VGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKEL 144
GG +D + V S+ G IIGKGG IK++
Sbjct: 410 QGGPMQDKIETMFTVPSSKCGIIIGKGGETIKQI 443
Score = 38.5 bits (88), Expect = 0.88, Method: Composition-based stats.
Identities = 36/130 (27%), Positives = 65/130 (50%), Gaps = 9/130 (6%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKAS-VTVPDCPG-----PERILTIFAELENGL 76
+ ++IP G +IGKGG I +L+ A V + + P P RI ++E
Sbjct: 201 VEIMIPGPKVGLIIGKGGETIKQLQEKSGAKMVVIQEGPSQEQEKPLRITGDPQKVEYAK 260
Query: 77 KVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVG-GLGKDDYDIRLIVHQSQAGCIIG 135
+++ E++ A E++ + RG + G+ N G G D + ++V ++ G +IG
Sbjct: 261 QLVYELI-AEKEMQMFHRGARGNDRSGNYSNDSSFNHGSGTTD-GVEVLVPRAAVGVVIG 318
Query: 136 KGGTKIKELR 145
KGG IK+++
Sbjct: 319 KGGDMIKKIQ 328
>gi|356525090|ref|XP_003531160.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 625
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 29/148 (19%)
Query: 15 RGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFA- 70
RG + R+L P V GSVIGK G I +R + +A V V D P P +R++TI+
Sbjct: 31 RGNDELIVYRILCPDEVIGSVIGKNGKVINSIRQETRAKVKVVD-PFPGSKDRVITIYCY 89
Query: 71 -------ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLG------KD 117
E+++ E + A D + + + + +G KD
Sbjct: 90 VKEKEDVEIDDEFAGKEPLCAAQDALLKVHVA-----------IANSIAAIGDSEKKRKD 138
Query: 118 DYDIRLIVHQSQAGCIIGKGGTKIKELR 145
+ +++V SQ+ IIGK G IK+LR
Sbjct: 139 RDECQILVPSSQSANIIGKAGATIKKLR 166
Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD 58
K + G P L +LIP+ G V+GKGG+NIA +R AS+ + D
Sbjct: 546 KLYGGLPPPSTLDMLIPANAVGKVLGKGGANIANIRKISGASIEISD 592
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-----PDC 59
V +RLL+PS+V G +IGK GS I +R KA V + P C
Sbjct: 388 VSIRLLVPSKVIGCIIGKSGSIINEIRKRTKADVRISKGDKPKC 431
Score = 35.4 bits (80), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKAS--VTVPDCPGPERILTI----FAELENG 75
E ++L+PS + ++IGK G+ I +LR+ +A+ VT D P + F +
Sbjct: 141 ECQILVPSSQSANIIGKAGATIKKLRSKTRANIKVTAKDAADPTHSCAMEFDNFVVITGE 200
Query: 76 LKVIEEVLPALDEIRQKYG 94
+ ++ L A+ I K+G
Sbjct: 201 SEAVKRALFAVSSIMYKFG 219
>gi|302766557|ref|XP_002966699.1| hypothetical protein SELMODRAFT_85231 [Selaginella moellendorffii]
gi|300166119|gb|EFJ32726.1| hypothetical protein SELMODRAFT_85231 [Selaginella moellendorffii]
Length = 324
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD----CPGP-ERILTIFAELEN 74
++++LL+P V G++IGKGGSNI + D +AS+ + PG +RI+TI ++
Sbjct: 96 SIQVKLLVPKTVCGAIIGKGGSNIKKFVEDSQASIKLSSQDQLLPGVIDRIVTIGGNVDQ 155
Query: 75 GLKVIEEVLPALDE 88
+K + +L L E
Sbjct: 156 IIKAVTLILTKLTE 169
Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 60/149 (40%), Gaps = 32/149 (21%)
Query: 1 MEFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD-- 58
MEF F G LR L+ + AGSVIGKGGS I+ + A + +
Sbjct: 1 MEFL------FAENNAGETTTNLRFLVTNTAAGSVIGKGGSTISDFQAQSGARIQLSRNH 54
Query: 59 --CPG-PERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLG 115
PG +R+ + L +VL A I K K +D
Sbjct: 55 EYFPGTSDRVAVLSGSL-------ADVLTAFQLIISKIIKDDNQDD-------------- 93
Query: 116 KDDYDIRLIVHQSQAGCIIGKGGTKIKEL 144
++L+V ++ G IIGKGG+ IK+
Sbjct: 94 TKSIQVKLLVPKTVCGAIIGKGGSNIKKF 122
>gi|149028151|gb|EDL83589.1| KH-type splicing regulatory protein, isoform CRA_b [Rattus
norvegicus]
Length = 721
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 152 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 207
Query: 85 ALDEIRQKYGKGRGGEDG--GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 208 MLDDI---VSRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 258
Query: 143 ELRD 146
+L++
Sbjct: 259 QLQE 262
>gi|148706277|gb|EDL38224.1| mCG140911, isoform CRA_a [Mus musculus]
Length = 765
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 188 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 243
Query: 85 ALDEIRQKYGKGRGGEDG--GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 244 MLDDI---VSRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 294
Query: 143 ELRD 146
+L++
Sbjct: 295 QLQE 298
>gi|19424312|ref|NP_598286.1| far upstream element-binding protein 2 [Rattus norvegicus]
gi|37078084|sp|Q99PF5.1|FUBP2_RAT RecName: Full=Far upstream element-binding protein 2;
Short=FUSE-binding protein 2; AltName: Full=KH
type-splicing regulatory protein; Short=KSRP; AltName:
Full=MAP2 RNA trans-acting protein 1; Short=MARTA1
gi|12584134|gb|AAG59811.1|AF308818_1 MAP2 RNA trans-acting protein MARTA1 [Rattus norvegicus]
Length = 721
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 152 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 207
Query: 85 ALDEIRQKYGKGRGGEDG--GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 208 MLDDI---VSRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 258
Query: 143 ELRD 146
+L++
Sbjct: 259 QLQE 262
>gi|255583738|ref|XP_002532622.1| Far upstream element-binding protein, putative [Ricinus communis]
gi|223527642|gb|EEF29753.1| Far upstream element-binding protein, putative [Ricinus communis]
Length = 314
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 62/132 (46%), Gaps = 32/132 (24%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD----CPG-PERILTIFAELENGLK 77
+R L+ + AGSVIGKGG+ I ++ A + + PG +RI+ I L++ LK
Sbjct: 38 VRFLVSNAAAGSVIGKGGATITDFQSQSGARIQLSRNYEFFPGTSDRIILISGILDDVLK 97
Query: 78 VIEEVLPA-LDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYD----IRLIVHQSQAGC 132
+E VL L E+ EDG DD D +RL+V S G
Sbjct: 98 GVELVLAKLLSELHT--------EDG--------------DDVDPRTKVRLVVPNSSCGS 135
Query: 133 IIGKGGTKIKEL 144
IIGKGG+ IK
Sbjct: 136 IIGKGGSIIKSF 147
Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 15/139 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG-----PERILTIFAELENG 75
++RL++P+ GS+IGKGGS I + +A + + +R++T+ LE
Sbjct: 122 TKVRLVVPNSSCGSIIGKGGSIIKSFIEESQAGIKISPQDNNFYGLNDRLVTVTGTLEEQ 181
Query: 76 LKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLG--------KDDY--DIRLIV 125
++ I+ +L L + YN G G K+D + + V
Sbjct: 182 MRAIDLILSKLYDDPHYVQTMHAPFSYAVAYNSMNYGANGAGGKFQNNKEDRTNSVTIGV 241
Query: 126 HQSQAGCIIGKGGTKIKEL 144
+ G ++G+GG I E+
Sbjct: 242 ADAHIGLVVGRGGRNIMEI 260
>gi|149028150|gb|EDL83588.1| KH-type splicing regulatory protein, isoform CRA_a [Rattus
norvegicus]
Length = 729
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 152 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 207
Query: 85 ALDEIRQKYGKGRGGEDG--GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 208 MLDDI---VSRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 258
Query: 143 ELRD 146
+L++
Sbjct: 259 QLQE 262
>gi|405957186|gb|EKC23416.1| RNA-binding protein Nova-1 [Crassostrea gigas]
Length = 561
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 10/86 (11%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVP----DCPGPERI 65
NF+R R ++++L+P+ AG VIGKGG+ I +++ + A + + + PER
Sbjct: 115 NFERHR------QVKILVPNSTAGMVIGKGGNYIKQIKEESGAYIQISQKSKETNLPERC 168
Query: 66 LTIFAELENGLKVIEEVLPALDEIRQ 91
+T+ E++N K +E +L + E Q
Sbjct: 169 ITVAGEIDNNRKAVELILQKIVEDPQ 194
>gi|302792551|ref|XP_002978041.1| hypothetical protein SELMODRAFT_108378 [Selaginella moellendorffii]
gi|300154062|gb|EFJ20698.1| hypothetical protein SELMODRAFT_108378 [Selaginella moellendorffii]
Length = 324
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD----CPGP-ERILTIFAELEN 74
++++LL+P V G++IGKGGSNI + D +AS+ + PG +RI+TI ++
Sbjct: 96 SIQVKLLVPKTVCGAIIGKGGSNIKKFVEDSQASIKLSSQDQLLPGVIDRIVTIGGNVDQ 155
Query: 75 GLKVIEEVLPALDE 88
+K + +L L E
Sbjct: 156 IIKAVTLILTKLTE 169
Score = 42.4 bits (98), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 60/149 (40%), Gaps = 32/149 (21%)
Query: 1 MEFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD-- 58
MEF F G LR L+ + AGSVIGKGGS I+ + A + +
Sbjct: 1 MEFL------FAENNAGETTTNLRFLVTNTAAGSVIGKGGSTISDFQAQSGARIQLSRNH 54
Query: 59 --CPG-PERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLG 115
PG +R+ + L +VL A I K K +D
Sbjct: 55 EYFPGTSDRVAVLSGSL-------ADVLTAFQLIISKIIKDDNQDD-------------- 93
Query: 116 KDDYDIRLIVHQSQAGCIIGKGGTKIKEL 144
++L+V ++ G IIGKGG+ IK+
Sbjct: 94 TKSIQVKLLVPKTVCGAIIGKGGSNIKKF 122
>gi|385302954|gb|EIF47057.1| rna binding protein [Dekkera bruxellensis AWRI1499]
Length = 339
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 76/152 (50%), Gaps = 22/152 (14%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVT--VPDCPGPERILTIFAEL 72
G + R+L+ R AG++IG+ G NI R+RND KA V+ V C +RIL + +
Sbjct: 34 GKTLITYRVLVSRREAGAIIGRNGDNITRIRNDNNVKAGVSKVVEGC--IDRILIVTGMV 91
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGD-----GYNGGGVGGL----GKDDYD--- 120
+N + + ++ E + + + E G D Y + L G +D +
Sbjct: 92 DNVPNALVSIAKSVAEANAETVR-QANEKGTDPTSLITYEYFPLKPLTQRPGPNDPEYAE 150
Query: 121 ---IRLIVHQSQAGCIIGKGGTKIKELRDTFD 149
+RL++ Q G +IGKGG++IK ++++ D
Sbjct: 151 TLFLRLLIPNVQMGTLIGKGGSRIKGIQESCD 182
>gi|359067148|ref|XP_003586314.1| PREDICTED: far upstream element-binding protein 2-like, partial
[Bos taurus]
Length = 679
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 98 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 153
Query: 85 ALDEIRQKYGKGRGGEDG--GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 154 MLDDI---VSRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 204
Query: 143 ELRD 146
+L++
Sbjct: 205 QLQE 208
>gi|354479313|ref|XP_003501856.1| PREDICTED: far upstream element-binding protein 2-like [Cricetulus
griseus]
Length = 639
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 70 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 125
Query: 85 ALDEIRQKYGKGRGGEDG--GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 126 MLDDI---VSRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 176
Query: 143 ELRD 146
+L++
Sbjct: 177 QLQE 180
>gi|1575607|gb|AAC50892.1| FUSE binding protein 2, partial [Homo sapiens]
Length = 652
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 95 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 150
Query: 85 ALDEIRQKYGKGRGGEDG--GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 151 MLDDI---VSRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 201
Query: 143 ELRD 146
+L++
Sbjct: 202 QLQE 205
>gi|310790849|gb|EFQ26382.1| KH domain-containing protein [Glomerella graminicola M1.001]
Length = 471
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 19/132 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGLKV 78
+ +R +I S A ++IGKGG N++ +R A TV D ERILT+ ++ K
Sbjct: 112 IHIRAVISSPEAATIIGKGGENVSNIRKMSGAKCTVSDYQKGAVERILTVSGVVDAAAKA 171
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
++ L+ + + + Y +RL++ G IIGKGG
Sbjct: 172 FGLIIRTLNN--EPLAEPSSAQ---------------SKTYPLRLLIPHILIGSIIGKGG 214
Query: 139 TKIKELRDTFDA 150
+I+E+++ A
Sbjct: 215 ARIREIQEASGA 226
>gi|307211366|gb|EFN87498.1| Far upstream element-binding protein 1 [Harpegnathos saltator]
Length = 751
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 67/129 (51%), Gaps = 7/129 (5%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKAS-VTVPDCPG-----PERILTIFAELENGL 76
+ ++IP G +IGKGG I +L+ A V + + P P RI ++E+
Sbjct: 198 VEIMIPGPKVGLIIGKGGETIKQLQEKSGAKMVVIQEGPSQEQEKPLRITGDPQKVEHAK 257
Query: 77 KVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGK 136
+++ E++ A E++ + GRG E G+ N G ++ + ++V ++ G +IGK
Sbjct: 258 QLVYELI-AEKEMQMFHRGGRGSERPGNYTNDNGFNHGPANNDGVEVLVPRAAVGVVIGK 316
Query: 137 GGTKIKELR 145
GG IK+++
Sbjct: 317 GGDMIKKIQ 325
Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 11/133 (8%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELE 73
GG + ++R +P ++ G +IG+GG I RL+++ + + P+ G PER+ T+ E
Sbjct: 100 GGICNEDIR--VPDKMVGLIIGRGGEQITRLQSETGCKIQMAPESGGLPERVCTLTGSRE 157
Query: 74 NGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCI 133
+ E VL +++ + E GD GGG GG+ + +++ + G I
Sbjct: 158 AVNRAKELVLSIVNQRSRS-------EGIGDMNMGGGGGGMMGHPGFVEIMIPGPKVGLI 210
Query: 134 IGKGGTKIKELRD 146
IGKGG IK+L++
Sbjct: 211 IGKGGETIKQLQE 223
>gi|54648253|gb|AAH85004.1| KHSRP protein [Homo sapiens]
Length = 710
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 151 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 206
Query: 85 ALDEIRQKYGKGRGGEDG--GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 207 MLDDI---VSRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 257
Query: 143 ELRD 146
+L++
Sbjct: 258 QLQE 261
>gi|2055427|gb|AAB53222.1| KSRP [Homo sapiens]
Length = 711
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 151 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 206
Query: 85 ALDEIRQKYGKGRGGEDG--GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 207 MLDDI---VSRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 257
Query: 143 ELRD 146
+L++
Sbjct: 258 QLQE 261
>gi|390478449|ref|XP_003735512.1| PREDICTED: LOW QUALITY PROTEIN: far upstream element-binding
protein 2 [Callithrix jacchus]
Length = 657
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 97 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 152
Query: 85 ALDEIRQKYGKGRGGEDG--GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 153 MLDDI---VSRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 203
Query: 143 ELRD 146
+L++
Sbjct: 204 QLQE 207
>gi|154355000|ref|NP_003676.2| far upstream element-binding protein 2 [Homo sapiens]
gi|332852032|ref|XP_512315.3| PREDICTED: far upstream element-binding protein 2 [Pan troglodytes]
gi|402903923|ref|XP_003914804.1| PREDICTED: far upstream element-binding protein 2 [Papio anubis]
gi|313104306|sp|Q92945.4|FUBP2_HUMAN RecName: Full=Far upstream element-binding protein 2;
Short=FUSE-binding protein 2; AltName: Full=KH
type-splicing regulatory protein; Short=KSRP; AltName:
Full=p75
gi|119589503|gb|EAW69097.1| KH-type splicing regulatory protein (FUSE binding protein 2),
isoform CRA_c [Homo sapiens]
Length = 711
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 151 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 206
Query: 85 ALDEIRQKYGKGRGGEDG--GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 207 MLDDI---VSRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 257
Query: 143 ELRD 146
+L++
Sbjct: 258 QLQE 261
>gi|403296273|ref|XP_003939037.1| PREDICTED: far upstream element-binding protein 2, partial [Saimiri
boliviensis boliviensis]
Length = 644
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 84 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 139
Query: 85 ALDEIRQKYGKGRGGEDG--GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 140 MLDDI---VSRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 190
Query: 143 ELRD 146
+L++
Sbjct: 191 QLQE 194
>gi|345566886|gb|EGX49826.1| hypothetical protein AOL_s00076g710 [Arthrobotrys oligospora ATCC
24927]
Length = 379
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 23/130 (17%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVT--VPDCPGPERILTIFAELENGL 76
+ LR ++ S+ AG +IGK G N+A LR++ KA V+ VP +R+LT+ L+
Sbjct: 49 LTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVPGV--HDRVLTVTGNLDGVA 106
Query: 77 KVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGK 136
K V L + G + + +RL++ +Q G IIG+
Sbjct: 107 KAYAMVAQTLVD-----------------SPPGAIPTTPMGTHPVRLLISHNQMGTIIGR 149
Query: 137 GGTKIKELRD 146
G KIK ++D
Sbjct: 150 QGLKIKHIQD 159
>gi|397523648|ref|XP_003831836.1| PREDICTED: far upstream element-binding protein 2-like [Pan
paniscus]
Length = 630
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 70 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 125
Query: 85 ALDEIRQKYGKGRGGEDG--GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 126 MLDDI---VSRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 176
Query: 143 ELRD 146
+L++
Sbjct: 177 QLQE 180
>gi|336465527|gb|EGO53767.1| hypothetical protein NEUTE1DRAFT_119308 [Neurospora tetrasperma
FGSC 2508]
gi|350295174|gb|EGZ76151.1| eukaryotic type KH-domain (KH-domain type I) [Neurospora
tetrasperma FGSC 2509]
Length = 481
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 19/132 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGLKV 78
+ +R +I S A ++IGKGG N++++R A TV D ERILT+ V
Sbjct: 125 IHVRSVISSPEAATIIGKGGENVSKIREMSNAKCTVSDYQKGAVERILTVSG-------V 177
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
++ V A I + E Y +RL++ G IIGKGG
Sbjct: 178 VDAVAKAFGLIIRTLNNEPLAEPSNT----------HSKTYPLRLLIPHVLIGSIIGKGG 227
Query: 139 TKIKELRDTFDA 150
+IKE+++ A
Sbjct: 228 ARIKEIQEASGA 239
>gi|242078463|ref|XP_002444000.1| hypothetical protein SORBIDRAFT_07g005630 [Sorghum bicolor]
gi|241940350|gb|EES13495.1| hypothetical protein SORBIDRAFT_07g005630 [Sorghum bicolor]
Length = 629
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 23/129 (17%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--PERILTIFAELENGLK 77
++E R+L PS G VIG+GG+ I +R + A + V D E I+TI +
Sbjct: 309 ELEFRVLCPSGKIGLVIGRGGATIKNIRQESGARIDVDDAKNDREESIITI-----TSTE 363
Query: 78 VIEEV-LPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGK 136
I++V A++ + K ED D ++RL+V GC+IG+
Sbjct: 364 AIDDVKSAAVEAVLLLQAKINDYED---------------DRMNLRLLVPNKVIGCLIGR 408
Query: 137 GGTKIKELR 145
GG+ + ++R
Sbjct: 409 GGSIVNDMR 417
Score = 40.4 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 27/138 (19%)
Query: 24 RLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD-CPGPE-RILTIF---------AEL 72
R+L P + GSVIGK G+ I +R A V V D PG + R++ ++ AE+
Sbjct: 44 RILCPDSLIGSVIGKNGNVINAIRQQTSAKVKVVDPYPGADKRVILVYCYVKHRDLDAEV 103
Query: 73 ENGLKVI---EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
++ V + +L + I + R D K+ + ++V SQ
Sbjct: 104 DDNEPVCAAQDALLRVHNAIVDTLHRNRRDSDK-------------KNTEEANILVPASQ 150
Query: 130 AGCIIGKGGTKIKELRDT 147
A +IGK G IK LR T
Sbjct: 151 ASNVIGKSGAVIKHLRST 168
Score = 39.3 bits (90), Expect = 0.62, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+ LRLL+P++V G +IG+GGS + +R KA++ + P R
Sbjct: 391 MNLRLLVPNKVIGCLIGRGGSIVNDMRKKTKANILISKGDKPRR 434
>gi|380800867|gb|AFE72309.1| far upstream element-binding protein 2, partial [Macaca mulatta]
Length = 660
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 100 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 155
Query: 85 ALDEIRQKYGKGRGGEDG--GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 156 MLDDI---VSRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 206
Query: 143 ELRD 146
+L++
Sbjct: 207 QLQE 210
>gi|449433573|ref|XP_004134572.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 625
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 17/136 (12%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFA------- 70
V R+L P V GSVIGK G I +R + +A + V D P P +R++TIF
Sbjct: 36 VVYRILCPDEVIGSVIGKSGKVINSIRQETRAKIKVVD-PFPGAKDRVITIFCFVKDKED 94
Query: 71 -ELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQ 129
E+++ + + A D + + + + G + +D ++++ SQ
Sbjct: 95 VEVDDEFNDRQTLCAAQDALLKVHAAIANAL-----ASAGDLDRKQRDKEQCQILIPSSQ 149
Query: 130 AGCIIGKGGTKIKELR 145
+ +IGK G+ IK+LR
Sbjct: 150 SANVIGKAGSTIKKLR 165
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%)
Query: 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD 58
K + G P L +LIP+ AG VIGKGG+NIA +R A + + D
Sbjct: 546 KLYGGLPPPSSLEMLIPANAAGKVIGKGGANIANIRKISGALIEISD 592
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 58/143 (40%), Gaps = 27/143 (18%)
Query: 14 FRGGPNDVEL--RLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTI- 68
G P EL R+L P G VIGKGG I +R A V V D E I+TI
Sbjct: 299 ISGHPPSEELVVRVLCPFDNIGRVIGKGGGTIKSIRQASGARVEVDDTKRDCDECIITIS 358
Query: 69 -FAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQ 127
F L++ + E + L E K GG +RL++
Sbjct: 359 SFESLDDLKSMAVETVLLLQE---KINDDEGGT------------------VIMRLLIPS 397
Query: 128 SQAGCIIGKGGTKIKELRDTFDA 150
GCIIGK G+ I E+R + A
Sbjct: 398 KVIGCIIGKSGSIINEIRKSTRA 420
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
V +RLLIPS+V G +IGK GS I +R +A + +
Sbjct: 389 VIMRLLIPSKVIGCIIGKSGSIINEIRKSTRADIRI 424
>gi|395850961|ref|XP_003798040.1| PREDICTED: far upstream element-binding protein 2 [Otolemur
garnettii]
Length = 712
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 152 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 207
Query: 85 ALDEIRQKYGKGRGGEDG--GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 208 MLDDI---VSRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 258
Query: 143 ELRD 146
+L++
Sbjct: 259 QLQE 262
>gi|425778068|gb|EKV16213.1| hypothetical protein PDIP_37280 [Penicillium digitatum Pd1]
gi|425780605|gb|EKV18611.1| hypothetical protein PDIG_09250 [Penicillium digitatum PHI26]
Length = 496
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 19/132 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGLKV 78
V +R +I S A +VIGKGG N++++R A TV D ERILT+ + K
Sbjct: 110 VHIRAVISSPEAATVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSGPQDAAAKA 169
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
++ L+ + Y +RL++ G IIGKGG
Sbjct: 170 FGLIIRTLNNEPLE-----------------AASTAQSKTYPLRLLIPHILIGSIIGKGG 212
Query: 139 TKIKELRDTFDA 150
++I+E+++ A
Sbjct: 213 SRIREIQEASGA 224
Score = 35.0 bits (79), Expect = 9.4, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFA 70
LRLLIP + GS+IGKGGS I ++ A + D P ER L I
Sbjct: 195 LRLLIPHILIGSIIGKGGSRIREIQEASGARLNASDACLPLSTERSLVILG 245
>gi|255932595|ref|XP_002557854.1| Pc12g10310 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582473|emb|CAP80658.1| Pc12g10310 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 473
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 19/132 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGLKV 78
V +R +I S A +VIGKGG N++++R A TV D ERILT+ + K
Sbjct: 107 VHIRAVISSPEAATVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSGPQDAAAKA 166
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
++ L+ + Y +RL++ G IIGKGG
Sbjct: 167 FGLIIRTLNNEPLE-----------------AASTAQSKTYPLRLLIPHILIGSIIGKGG 209
Query: 139 TKIKELRDTFDA 150
++I+E+++ A
Sbjct: 210 SRIREIQEASGA 221
Score = 35.0 bits (79), Expect = 9.4, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFA 70
LRLLIP + GS+IGKGGS I ++ A + D P ER L I
Sbjct: 192 LRLLIPHILIGSIIGKGGSRIREIQEASGARLNASDACLPLSTERSLVILG 242
>gi|426230667|ref|XP_004009386.1| PREDICTED: far upstream element-binding protein 2 [Ovis aries]
Length = 484
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 71 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 126
Query: 85 ALDEIRQKYGKGRGGEDG--GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 127 MLDDI---VSRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 177
Query: 143 ELRD 146
+L++
Sbjct: 178 QLQE 181
>gi|119589502|gb|EAW69096.1| KH-type splicing regulatory protein (FUSE binding protein 2),
isoform CRA_b [Homo sapiens]
Length = 747
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 151 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 206
Query: 85 ALDEIRQKYGKGRGGEDG--GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 207 MLDDI---VSRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 257
Query: 143 ELRD 146
+L++
Sbjct: 258 QLQE 261
>gi|281339770|gb|EFB15354.1| hypothetical protein PANDA_017644 [Ailuropoda melanoleuca]
Length = 481
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 68 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 123
Query: 85 ALDEIRQKYGKGRGGEDG--GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 124 MLDDI---VSRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 174
Query: 143 ELRD 146
+L++
Sbjct: 175 QLQE 178
>gi|302414660|ref|XP_003005162.1| Poly(rC)-binding protein [Verticillium albo-atrum VaMs.102]
gi|261356231|gb|EEY18659.1| Poly(rC)-binding protein [Verticillium albo-atrum VaMs.102]
Length = 478
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 59/137 (43%), Gaps = 29/137 (21%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGLKV 78
+ +R +I S A +VIGKGG N++ +R A TV D ERILT+ ++ K
Sbjct: 115 IHIRAVISSPEAATVIGKGGENVSNIRKMSGAKCTVSDYQKGAVERILTVSGVVDASAKA 174
Query: 79 IEEVL-----PALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCI 133
++ LDE K Y +RL++ G I
Sbjct: 175 FGLIIRTLNNEPLDEPSSAQSK----------------------TYPLRLLIPHILIGSI 212
Query: 134 IGKGGTKIKELRDTFDA 150
IGKGG +I+E+++ A
Sbjct: 213 IGKGGARIREIQEASGA 229
>gi|297275911|ref|XP_001090850.2| PREDICTED: far upstream element-binding protein 2 [Macaca mulatta]
Length = 686
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 90 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 145
Query: 85 ALDEIRQKYGKGRGGEDG--GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 146 MLDDI---VSRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 196
Query: 143 ELRD 146
+L++
Sbjct: 197 QLQE 200
>gi|15217969|ref|NP_175569.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|12321677|gb|AAG50879.1|AC025294_17 hypothetical protein [Arabidopsis thaliana]
gi|12325367|gb|AAG52626.1|AC024261_13 hypothetical protein; 15135-12645 [Arabidopsis thaliana]
gi|31711718|gb|AAP68215.1| At1g51580 [Arabidopsis thaliana]
gi|110735740|dbj|BAE99849.1| hypothetical protein [Arabidopsis thaliana]
gi|332194564|gb|AEE32685.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 621
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 31/157 (19%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD---CPGPERILTIFA---ELEN 74
V RLL P+ G++IGKGGS I L++ + + V D P ER++ I A + ++
Sbjct: 19 VHFRLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPVPSEERVVLIIAPSGKKKD 78
Query: 75 GLKVIEEVLPALDEIRQKYGKGRGGEDGGD---------------------GYNGGGVGG 113
V + P +E +Q+ G G GGD G + V G
Sbjct: 79 ESNVCDSENPGSEEPKQEKGSECAGTSGGDDEEAPSSAQMALLRVFERIVFGDDAATVDG 138
Query: 114 ----LGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRD 146
G+ + R+IV +Q ++ KGG I+++R+
Sbjct: 139 DELDKGESEGLCRMIVRGNQVDYLMSKGGKMIQKIRE 175
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 24/131 (18%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV--PDCPGPERILTIFAE--LENG 75
+V RLL P+ GS+IGKGG+ + L+N+ AS+ V P ERI+ I A LE
Sbjct: 275 EVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVISARENLERR 334
Query: 76 LKVIEE-VLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCII 134
+ ++ V+ + I + +G RL+VH G ++
Sbjct: 335 HSLAQDGVMRVHNRIVE-------------------IGFEPSAAVVARLLVHSPYIGRLL 375
Query: 135 GKGGTKIKELR 145
GKGG I E+R
Sbjct: 376 GKGGHLISEMR 386
>gi|74224349|dbj|BAE33750.1| unnamed protein product [Mus musculus]
Length = 748
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 152 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 207
Query: 85 ALDEIRQKYGKGRGGEDG--GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 208 MLDDI---VSRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 258
Query: 143 ELRD 146
+L++
Sbjct: 259 QLQE 262
>gi|355703041|gb|EHH29532.1| hypothetical protein EGK_09989, partial [Macaca mulatta]
Length = 625
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 68 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 123
Query: 85 ALDEIRQKYGKGRGGEDG--GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 124 MLDDI---VSRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 174
Query: 143 ELRD 146
+L++
Sbjct: 175 QLQE 178
>gi|432887611|ref|XP_004074938.1| PREDICTED: far upstream element-binding protein 3-like [Oryzias
latipes]
Length = 562
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 6/132 (4%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--PERILTIFAELENGLKV 78
L +++P G +IG+ G I +++ND + G P+R+ + + E+
Sbjct: 259 TSLDVVVPRFAVGIIIGRNGEMIKKIQNDAGVRIQFKQDDGISPDRVAQVMGQPEHCHHA 318
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
+ + + +++ G G G G N GG GGL ++ V + G +IGKGG
Sbjct: 319 VHLINELVQTAQERDGYGVMGRRGRVDCNTGGAGGL----QEVTYAVPADKCGLVIGKGG 374
Query: 139 TKIKELRDTFDA 150
IK +++ A
Sbjct: 375 ETIKNIKEQSRA 386
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 17/122 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--PERILTIFAELENGLKVIEEVLP 84
+P ++ G +IGKGG I+R++ + + + G +R T+ EN IE+
Sbjct: 89 VPDKMVGFIIGKGGEQISRIQQESGCKIQIASDSGGMLDRPCTLTGSPEN----IEQAKR 144
Query: 85 ALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKEL 144
L EI ++ G G + DG G + ++++ ++ G +IGKGG IK+L
Sbjct: 145 LLSEIIEQCRYGPGFHNDMDG--NGSIQ---------QMLIPANKVGLVIGKGGETIKQL 193
Query: 145 RD 146
++
Sbjct: 194 QE 195
>gi|367043886|ref|XP_003652323.1| hypothetical protein THITE_2113686 [Thielavia terrestris NRRL 8126]
gi|346999585|gb|AEO65987.1| hypothetical protein THITE_2113686 [Thielavia terrestris NRRL 8126]
Length = 482
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 29/137 (21%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGLKV 78
+ +R +I S A +VIGKGG N++++R A TV D ERILT+ ++ K
Sbjct: 123 IHIRAVISSPEAATVIGKGGENVSKIRQMSGAKCTVSDYQKGAVERILTVSGIVDAVAKA 182
Query: 79 IEEVL-----PALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCI 133
++ L+E ++ K Y +RL++ G I
Sbjct: 183 FGLIIRTLNNEPLNEPSNQHSK----------------------TYPLRLLIPHILIGSI 220
Query: 134 IGKGGTKIKELRDTFDA 150
IGKGG +IKE+++ A
Sbjct: 221 IGKGGARIKEIQEASGA 237
>gi|47219920|emb|CAF97190.1| unnamed protein product [Tetraodon nigroviridis]
Length = 66
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 27/40 (67%)
Query: 11 FKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDF 50
FKR R VELR+L+ S+ AG+VIGKGG NI LR D
Sbjct: 15 FKRSRNADEMVELRILLQSKNAGAVIGKGGKNIKALRTDV 54
>gi|169622886|ref|XP_001804851.1| hypothetical protein SNOG_14668 [Phaeosphaeria nodorum SN15]
gi|160704873|gb|EAT77860.2| hypothetical protein SNOG_14668 [Phaeosphaeria nodorum SN15]
Length = 357
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 29/140 (20%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGL 76
+ + LR ++ S+ AG +IGK G N+A LR++ +A V+ +R+L++ L
Sbjct: 43 SQLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVRAGVSKVVQGVHDRVLSVTGSLSG-- 100
Query: 77 KVIEEVLPALDEIRQKYG-KGRGGEDGGDGYNGGGVGGLGKDD---------YDIRLIVH 126
I + YG +G DG G+GG+ + D IRL++
Sbjct: 101 ------------ISKAYGLVAKGLLDGAPAM---GMGGVVRTDGTHQRKLTVTAIRLLIS 145
Query: 127 QSQAGCIIGKGGTKIKELRD 146
+Q G IIG+ G KIK+++D
Sbjct: 146 HNQMGTIIGRQGLKIKQIQD 165
>gi|398397391|ref|XP_003852153.1| hypothetical protein MYCGRDRAFT_109444 [Zymoseptoria tritici
IPO323]
gi|339472034|gb|EGP87129.1| hypothetical protein MYCGRDRAFT_109444 [Zymoseptoria tritici
IPO323]
Length = 362
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 61/130 (46%), Gaps = 18/130 (13%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PG-PERILTIFAELENGLKV 78
+ LR ++ S+ AG +IGK G N+A LR+ V PG +R+LT+
Sbjct: 41 LTLRAIVTSKEAGVIIGKAGQNVADLRDKTGVRAGVSKVVPGVHDRVLTVTG-------- 92
Query: 79 IEEVLPALDEIRQKYG-KGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKG 137
AL I YG G GGV G + + IRL++ +Q G IIG+
Sbjct: 93 ------ALTGIADAYGLVADSLVKGAPQMGMGGVVG-SPNTHPIRLLISHNQMGTIIGRQ 145
Query: 138 GTKIKELRDT 147
G KIK+++D
Sbjct: 146 GLKIKQIQDA 155
>gi|358412988|ref|XP_003582441.1| PREDICTED: far upstream element-binding protein 2-like [Bos taurus]
Length = 841
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 205 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 260
Query: 85 ALDEIRQKYGKGRGGEDG--GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 261 MLDDI---VSRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 311
Query: 143 ELRD 146
+L++
Sbjct: 312 QLQE 315
>gi|340959534|gb|EGS20715.1| hypothetical protein CTHT_0025510 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 373
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 20/132 (15%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGL 76
+ LR L+ S+ AG +IGKGG N+A LR + KA V+ +R+LTI +
Sbjct: 49 TQLTLRALVSSKEAGVIIGKGGQNVANLREETGVKAGVSKVVQGVYDRVLTITGGCDAVS 108
Query: 77 KVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCII 134
+ V AL E G +GG+ + + + I+L++ +Q G II
Sbjct: 109 RAYAVVARALLE----------------GAPAVSMGGVVQHNGTHPIKLLISHNQMGTII 152
Query: 135 GKGGTKIKELRD 146
G+ G +IK ++D
Sbjct: 153 GRQGQRIKYIQD 164
>gi|432101996|gb|ELK29816.1| Far upstream element-binding protein 2, partial [Myotis davidii]
Length = 664
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 68 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 123
Query: 85 ALDEIRQKYGKGRGGEDG--GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 124 MLDDI---VSRGRGGPPGQFHDNSNGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 174
Query: 143 ELRD 146
+L++
Sbjct: 175 QLQE 178
>gi|345564609|gb|EGX47569.1| hypothetical protein AOL_s00083g77 [Arthrobotrys oligospora ATCC
24927]
Length = 459
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 19/134 (14%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGL 76
N + +R LI S A +VIGKGG N+ ++R +A TV + ERILT+ ++
Sbjct: 101 NWIHVRALITSAEAATVIGKGGENVTQIRRLSEAKCTVSEYTRGAVERILTVSGGVDAVA 160
Query: 77 KVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGK 136
K ++ ++ + + + +RL++ G IIGK
Sbjct: 161 KAFGLIIRTINSEPLSSASTQNSK-----------------TFPLRLLIPHILIGSIIGK 203
Query: 137 GGTKIKELRDTFDA 150
GG +I+E++D A
Sbjct: 204 GGMRIREIQDASGA 217
>gi|148706278|gb|EDL38225.1| mCG140911, isoform CRA_b [Mus musculus]
Length = 773
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 177 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 232
Query: 85 ALDEIRQKYGKGRGGEDG--GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 233 MLDDI---VSRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 283
Query: 143 ELRD 146
+L++
Sbjct: 284 QLQE 287
>gi|344306102|ref|XP_003421728.1| PREDICTED: far upstream element-binding protein 2-like [Loxodonta
africana]
Length = 766
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 121 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 176
Query: 85 ALDEIRQKYGKGRGGEDG--GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 177 MLDDI---VSRGRGGPPGQFHDSANGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 227
Query: 143 ELRD 146
+L++
Sbjct: 228 QLQE 231
>gi|308482640|ref|XP_003103523.1| hypothetical protein CRE_28671 [Caenorhabditis remanei]
gi|308259944|gb|EFP03897.1| hypothetical protein CRE_28671 [Caenorhabditis remanei]
Length = 349
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 19/144 (13%)
Query: 13 RFRGGPND---VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD----CPG-PER 64
RF G D + +++LIPS G++IG+ G + LR D K + + PG ER
Sbjct: 72 RFEEGEKDGEILSIKMLIPSLAIGAIIGRNGQELNTLRKDHKCQIQISKDGDTYPGTTER 131
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLI 124
I + L + + VIE I++K K + G D ++ L D +I+++
Sbjct: 132 ICFVKGRLNHIVAVIE-------SIQEKIRKKCPNQTGNDAFDLENT--LRGD--EIKIV 180
Query: 125 VHQSQAGCIIGKGGTKIKELRDTF 148
+ + + +IGK IK +R F
Sbjct: 181 MPYTSSRMVIGKSKANIKLIRKHF 204
>gi|355697562|gb|AES00713.1| KH-type splicing regulatory protein [Mustela putorius furo]
Length = 663
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 68 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 123
Query: 85 ALDEIRQKYGKGRGGEDG--GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 124 MLDDI---VSRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 174
Query: 143 ELRD 146
+L++
Sbjct: 175 QLQE 178
>gi|355755365|gb|EHH59112.1| hypothetical protein EGM_09154, partial [Macaca fascicularis]
Length = 629
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 68 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 123
Query: 85 ALDEIRQKYGKGRGGEDG--GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 124 MLDDI---VSRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 174
Query: 143 ELRD 146
+L++
Sbjct: 175 QLQE 178
>gi|149716720|ref|XP_001496194.1| PREDICTED: far upstream element-binding protein 2 [Equus caballus]
Length = 667
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 71 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 126
Query: 85 ALDEIRQKYGKGRGGEDG--GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 127 MLDDI---VSRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 177
Query: 143 ELRD 146
+L++
Sbjct: 178 QLQE 181
>gi|163954948|ref|NP_034743.3| far upstream element-binding protein 2 [Mus musculus]
gi|341940718|sp|Q3U0V1.2|FUBP2_MOUSE RecName: Full=Far upstream element-binding protein 2;
Short=FUSE-binding protein 2; AltName: Full=KH
type-splicing regulatory protein; Short=KSRP
Length = 748
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 152 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 207
Query: 85 ALDEIRQKYGKGRGGEDG--GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 208 MLDDI---VSRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 258
Query: 143 ELRD 146
+L++
Sbjct: 259 QLQE 262
>gi|417412327|gb|JAA52553.1| Putative k-logy type rna binding protein, partial [Desmodus
rotundus]
Length = 689
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 93 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 148
Query: 85 ALDEIRQKYGKGRGGEDG--GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 149 MLDDI---VSRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 199
Query: 143 ELRD 146
+L++
Sbjct: 200 QLQE 203
>gi|269784927|ref|NP_001161615.1| NOVA-like protein [Saccoglossus kowalevskii]
gi|268054231|gb|ACY92602.1| NOVA-like protein [Saccoglossus kowalevskii]
Length = 516
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 19/139 (13%)
Query: 12 KRFRGGPNDVE---LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PE 63
KR G ND L++LIPS AGSVIGKGG + +L+ + A++ + PG E
Sbjct: 34 KRTNIGGNDDNKYILKMLIPSAAAGSVIGKGGQTVVQLQRETGANIKLSKSNDYYPGTSE 93
Query: 64 RILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRL 123
R++ I +E+ V V+ + + Q K G + +++
Sbjct: 94 RVVLITGTVESLTAVGNFVIEKVRDSPQLAAK-----------TGNESAVSQERARQVKI 142
Query: 124 IVHQSQAGCIIGKGGTKIK 142
I+ S AG IIGKGG IK
Sbjct: 143 IIPNSTAGLIIGKGGATIK 161
>gi|194374941|dbj|BAG62585.1| unnamed protein product [Homo sapiens]
Length = 364
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P+ + G +IG+GG I +++ D V + PD G PER +++ E+ K
Sbjct: 107 VPNGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESAQKAKM---- 162
Query: 85 ALDEIRQKYGKGRGGEDG--GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 163 MLDDI---VSRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 213
Query: 143 ELRD 146
+L++
Sbjct: 214 QLQE 217
>gi|410950239|ref|XP_004001515.1| PREDICTED: LOW QUALITY PROTEIN: far upstream element-binding
protein 2 [Felis catus]
Length = 667
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 71 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 126
Query: 85 ALDEIRQKYGKGRGGEDG--GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 127 MLDDI---VSRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 177
Query: 143 ELRD 146
+L++
Sbjct: 178 QLQE 181
>gi|440901061|gb|ELR52061.1| Far upstream element-binding protein 2, partial [Bos grunniens
mutus]
Length = 664
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 68 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 123
Query: 85 ALDEIRQKYGKGRGGEDG--GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 124 MLDDI---VSRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 174
Query: 143 ELRD 146
+L++
Sbjct: 175 QLQE 178
>gi|85111179|ref|XP_963814.1| hypothetical protein NCU09237 [Neurospora crassa OR74A]
gi|28925551|gb|EAA34578.1| hypothetical protein NCU09237 [Neurospora crassa OR74A]
gi|38566984|emb|CAE76284.1| related to hnRNP protein E2 [Neurospora crassa]
Length = 489
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 19/132 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGLKV 78
+ +R +I S A ++IGKGG N++++R A TV D ERILT+ V
Sbjct: 125 IHVRSVISSPEAATIIGKGGENVSKIREMSNAKCTVSDYQKGAVERILTVSG-------V 177
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
++ V A I + E Y +RL++ G IIGKGG
Sbjct: 178 VDAVAKAFGLIIRTLNNEPLAEPSNT----------HSKTYPLRLLIPHVLIGSIIGKGG 227
Query: 139 TKIKELRDTFDA 150
+IKE+++ A
Sbjct: 228 ARIKEIQEASGA 239
>gi|326504604|dbj|BAK06593.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 531
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 44/148 (29%), Positives = 66/148 (44%), Gaps = 36/148 (24%)
Query: 3 FFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV--PDCP 60
FF++Q ++ R++ + + G VIGKGGS I L+++ ASV V P
Sbjct: 151 FFVEQ------------EIVFRMICLNDMVGGVIGKGGSTIRALQSETGASVKVIDPVAD 198
Query: 61 GPERILTIFAELENGLKVIEEVL--PALDEIRQKYGK-GRGGEDGGDGYNGGGVGGLGKD 117
ERI+ I A EN E++ P+ D + + Y K D
Sbjct: 199 SDERIIVISAR-EN-----SEMMRSPSQDALLRVYSKISEASMDKSSSVPA--------- 243
Query: 118 DYDIRLIVHQSQAGCIIGKGGTKIKELR 145
RL+V GC++GKGG+ I E+R
Sbjct: 244 ----RLLVPAQHIGCLLGKGGSIIAEMR 267
>gi|395750296|ref|XP_002828567.2| PREDICTED: far upstream element-binding protein 2 [Pongo abelii]
Length = 757
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 197 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 252
Query: 85 ALDEIRQKYGKGRGGEDG--GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 253 MLDDI---VSRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 303
Query: 143 ELRD 146
+L++
Sbjct: 304 QLQE 307
>gi|350580630|ref|XP_003123158.3| PREDICTED: far upstream element-binding protein 2-like [Sus scrofa]
Length = 747
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 151 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 206
Query: 85 ALDEIRQKYGKGRGGEDG--GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 207 MLDDI---VSRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 257
Query: 143 ELRD 146
+L++
Sbjct: 258 QLQE 261
>gi|348550680|ref|XP_003461159.1| PREDICTED: far upstream element-binding protein 2 [Cavia porcellus]
Length = 718
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 122 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 177
Query: 85 ALDEIRQKYGKGRGGEDG--GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 178 MLDDI---VSRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 228
Query: 143 ELRD 146
+L++
Sbjct: 229 QLQE 232
>gi|336379931|gb|EGO21085.1| hypothetical protein SERLADRAFT_398361 [Serpula lacrymans var.
lacrymans S7.9]
Length = 304
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 19/132 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PG-PERILTIFAELENGLKV 78
+ +R LI ++ A +IGKGGS++ +R A V V + PG PERIL + L+ K
Sbjct: 2 IHMRCLIVTQDASIIIGKGGSHVNEIREKSGARVMVSESIPGNPERILNVSGPLDAVSKA 61
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
++ +++ + ++ V G I+ ++ S+ G +IGK G
Sbjct: 62 FGLIVRRIND---------------EPFDVPSVP--GSRAVTIKFMIPNSRMGSVIGKQG 104
Query: 139 TKIKELRDTFDA 150
+KIKE++D A
Sbjct: 105 SKIKEIQDASGA 116
>gi|224116392|ref|XP_002317286.1| predicted protein [Populus trichocarpa]
gi|222860351|gb|EEE97898.1| predicted protein [Populus trichocarpa]
Length = 363
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 66/150 (44%), Gaps = 31/150 (20%)
Query: 15 RGGPND--VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIF 69
+G ND + R+L P V GSVIGK G I +R++ +A V V D P P +RI+TI+
Sbjct: 28 KGTNNDGLIVYRILCPDGVIGSVIGKSGKVINSIRHESRARVKVVD-PFPGAKDRIITIY 86
Query: 70 AEL--------ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDI 121
+ ++ + A D + + + V LG D +
Sbjct: 87 CHIKEKEDVDVDDDFNHTNPLCAAQDALLKVHAA-----------ISNAVASLGDSDKRL 135
Query: 122 R------LIVHQSQAGCIIGKGGTKIKELR 145
R ++V SQ+ IIGK G IK LR
Sbjct: 136 RDKEECQILVPASQSANIIGKAGATIKRLR 165
>gi|119589501|gb|EAW69095.1| KH-type splicing regulatory protein (FUSE binding protein 2),
isoform CRA_a [Homo sapiens]
Length = 345
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 151 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 206
Query: 85 ALDEIRQKYGKGRGGEDG--GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 207 MLDDI---VSRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 257
Query: 143 ELRD 146
+L++
Sbjct: 258 QLQE 261
>gi|452989355|gb|EME89110.1| hypothetical protein MYCFIDRAFT_71441 [Pseudocercospora fijiensis
CIRAD86]
Length = 360
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 20/132 (15%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PG-PERILTIFAELENGL 76
+ + LR ++ S+ AG +IGK G N+A LR+ V PG +R+LT+
Sbjct: 39 SQLTLRAIVTSKEAGVIIGKAGQNVADLRDKTGVRAGVSKVVPGVHDRVLTVTG------ 92
Query: 77 KVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGL--GKDDYDIRLIVHQSQAGCII 134
AL I YG + G G+GG+ + + IRL++ +Q G II
Sbjct: 93 --------ALTGISDAYG--LVADSLVKGVPQMGMGGVVGNPNTHPIRLLISHNQMGTII 142
Query: 135 GKGGTKIKELRD 146
G+ G KIK+++D
Sbjct: 143 GRQGLKIKQIQD 154
>gi|426386866|ref|XP_004059901.1| PREDICTED: far upstream element-binding protein 2 [Gorilla gorilla
gorilla]
Length = 813
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 253 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 308
Query: 85 ALDEIRQKYGKGRGGEDG--GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 309 MLDDI---VSRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 359
Query: 143 ELRD 146
+L++
Sbjct: 360 QLQE 363
>gi|357145086|ref|XP_003573519.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 632
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 42/139 (30%), Positives = 65/139 (46%), Gaps = 27/139 (19%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--PERILTIFA-ELE 73
G D+ LR++ P G VIGKGG I +R + A++ V D E I+T+ + E
Sbjct: 309 GSGDLLLRVVCPGDKIGLVIGKGGMTIKSIRKESGANIDVDDAKNDREESIITVTSTEAT 368
Query: 74 NGLK--VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAG 131
+ +K +E VL +I DG +D IRL+V + G
Sbjct: 369 DDVKSAAVEAVLLLQAKI-------------NDGI---------EDRMHIRLLVPGNVIG 406
Query: 132 CIIGKGGTKIKELRDTFDA 150
C+IGKGG+ + ++R+ A
Sbjct: 407 CLIGKGGSIVNDMRNKSKA 425
Score = 40.4 bits (93), Expect = 0.25, Method: Composition-based stats.
Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD-CPGPE-RILTIFAELENGLKV 78
V R+L P +V GSVIGK G I +R A V V D PG + R++ ++ + +
Sbjct: 39 VVYRILCPDKVIGSVIGKNGKVINSIRQQTNAKVKVVDPYPGADKRVILVYCHVHHRDLT 98
Query: 79 IEEVLPALDEIRQKYGKGRGG-EDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKG 137
++ D+ R+ + D DD + ++V SQA +IGK
Sbjct: 99 HRDIDVDDDDDREPVCAAQNALLKVHDAIVEALAINSDSDDEEANILVPASQAASVIGKS 158
Query: 138 GTKIKELR 145
G+ IK LR
Sbjct: 159 GSVIKRLR 166
Score = 39.3 bits (90), Expect = 0.51, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER------ILTIF 69
G + + +RLL+P V G +IGKGGS + +RN KA + + P R ++ +F
Sbjct: 389 GIEDRMHIRLLVPGNVIGCLIGKGGSIVNDMRNKSKAIIHISKGSKPRRASSSDELVEVF 448
Query: 70 AELENGLKVIEEVLPALDE 88
E++ + +++ L E
Sbjct: 449 GEVDKLRDALVQIVLRLRE 467
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
+D E +L+P+ A SVIGK GS I RLR+ K+S+ V
Sbjct: 138 DDEEANILVPASQAASVIGKSGSVIKRLRSISKSSIKV 175
>gi|346979418|gb|EGY22870.1| Poly(rC)-binding protein [Verticillium dahliae VdLs.17]
Length = 477
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 59/137 (43%), Gaps = 29/137 (21%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGLKV 78
+ +R +I S A +VIGKGG N++ +R A TV D ERILT+ ++ K
Sbjct: 115 IHIRAVISSPEAATVIGKGGENVSNIRKMSGAKCTVSDYQKGAVERILTVSGVVDASAKA 174
Query: 79 IEEVL-----PALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCI 133
++ LDE K Y +RL++ G I
Sbjct: 175 FGLIIRTLNNEPLDEPSSAQSK----------------------TYPLRLLIPHILIGSI 212
Query: 134 IGKGGTKIKELRDTFDA 150
IGKGG +I+E+++ A
Sbjct: 213 IGKGGARIREIQEASGA 229
>gi|212723602|ref|NP_001132277.1| uncharacterized protein LOC100193713 [Zea mays]
gi|194693942|gb|ACF81055.1| unknown [Zea mays]
Length = 510
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 30/143 (20%)
Query: 14 FRGGPN-------DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV----PDCPGP 62
+R GP + +R+L S + GSVIGK G+N+ R+ A + V D G
Sbjct: 19 YRSGPQYPVTETEEFSIRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASGE 78
Query: 63 ERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIR 122
I+ E+ E + PA++ + + K + K R
Sbjct: 79 RLIIISSNEIP-----AEPISPAIEALILLHDKVSAPSE--------------KHHSSTR 119
Query: 123 LIVHQSQAGCIIGKGGTKIKELR 145
L+V S+ GCIIG+GG I ++R
Sbjct: 120 LVVPSSKVGCIIGEGGKVITDMR 142
>gi|225458964|ref|XP_002283591.1| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
vinifera]
Length = 701
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 57/184 (30%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRN-------------------- 48
S + + P V R+L P+ GSVIGKGG+ I+++R
Sbjct: 33 SQNQSLKISPGTVVFRVLCPASKTGSVIGKGGTIISQIRQETGVKVRVEETVSGCDERVV 92
Query: 49 ---------------------DFKASVTVPDCPGP-------ERILTIFAELENGLKVIE 80
D KA+ V D P E + +++E G+ ++
Sbjct: 93 LITGSDKDTEADNEQSKEDGEDTKAAEEVSDTKEPGENDEDKESVPVEDSQVEKGISSVQ 152
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
+ AL + ++ +G +GGD + + +RL+V SQ GC++GKGG+
Sbjct: 153 K---ALLLVFERMAEGESETNGGDEDSNKS------PTFVVRLLVLSSQVGCLLGKGGSV 203
Query: 141 IKEL 144
IK++
Sbjct: 204 IKQM 207
>gi|388854780|emb|CCF51673.1| related to PBP2-PAB1 binding protein [Ustilago hordei]
Length = 446
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 63/128 (49%), Gaps = 19/128 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PG-PERILTIFAELENGLKV 78
+ +R LI + A +IGK G +I +R+ A + + + PG PERILT+ L+ K
Sbjct: 140 ISMRTLIVTSDASIIIGKSGKHINEIRDKSNARLNISEIIPGNPERILTVSGPLDAVSKA 199
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
++ +++ + ++ V G IR IV S+ G +IGK G
Sbjct: 200 FGLIVRRIND---------------EPFDQPSVPG--SKSVTIRFIVPNSRMGSVIGKQG 242
Query: 139 TKIKELRD 146
+KIKE+++
Sbjct: 243 SKIKEIQE 250
>gi|389641821|ref|XP_003718543.1| Poly(rC)-binding protein 3 [Magnaporthe oryzae 70-15]
gi|351641096|gb|EHA48959.1| Poly(rC)-binding protein 3 [Magnaporthe oryzae 70-15]
Length = 483
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 19/132 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGLKV 78
+ +R +I S A ++IGKGG N++++R A TV D ERILT+ +
Sbjct: 126 IHIRAVISSPEAATIIGKGGENVSKIRQMSSAKCTVSDYQKGAVERILTVSG-------I 178
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
++ V A I + E Y +RL++ G IIGKGG
Sbjct: 179 VDAVAKAFGLIIRTLNNEPLSEP----------SSAHSKTYPLRLLIPHILIGSIIGKGG 228
Query: 139 TKIKELRDTFDA 150
+IKE+++ A
Sbjct: 229 ARIKEIQEASGA 240
>gi|170087462|ref|XP_001874954.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650154|gb|EDR14395.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 339
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 19/133 (14%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PG-PERILTIFAELENGLK 77
++ +R LI ++ A +IGKGGS++ +R A V V + PG PERIL + L+ K
Sbjct: 56 NIHMRCLIVTQDASIIIGKGGSHVNEIREKSGARVMVSESIPGNPERILNVSGPLDAVSK 115
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKG 137
++ +++ + ++ V G I+ ++ S+ G +IGK
Sbjct: 116 AFGLIVRRIND---------------EPFDVPSVP--GSRAVTIKFMIPNSRMGSVIGKQ 158
Query: 138 GTKIKELRDTFDA 150
G+KIKE++D A
Sbjct: 159 GSKIKEIQDASGA 171
>gi|440469758|gb|ELQ38855.1| Poly(rC)-binding protein 3 [Magnaporthe oryzae Y34]
gi|440482264|gb|ELQ62771.1| Poly(rC)-binding protein 3 [Magnaporthe oryzae P131]
Length = 490
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 19/132 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGLKV 78
+ +R +I S A ++IGKGG N++++R A TV D ERILT+ +
Sbjct: 126 IHIRAVISSPEAATIIGKGGENVSKIRQMSSAKCTVSDYQKGAVERILTVSG-------I 178
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
++ V A I + E Y +RL++ G IIGKGG
Sbjct: 179 VDAVAKAFGLIIRTLNNEPLSEP----------SSAHSKTYPLRLLIPHILIGSIIGKGG 228
Query: 139 TKIKELRDTFDA 150
+IKE+++ A
Sbjct: 229 ARIKEIQEASGA 240
>gi|147845094|emb|CAN78473.1| hypothetical protein VITISV_026793 [Vitis vinifera]
Length = 709
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 57/184 (30%)
Query: 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRN-------------------- 48
S + + P V R+L P+ GSVIGKGG+ I+++R
Sbjct: 33 SQNQSLKISPGTVVFRVLCPASKTGSVIGKGGTIISQIRQETGVKVRVEETVSGCDERVV 92
Query: 49 ---------------------DFKASVTVPDCPGP-------ERILTIFAELENGLKVIE 80
D KA+ V D P E + +++E G+ ++
Sbjct: 93 LITGSDKDTEADNEQSKEDGEDTKAAEEVSDTKEPGENDEDKESVPVEDSQVEKGISSVQ 152
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
+ AL + ++ +G +GGD + + +RL+V SQ GC++GKGG+
Sbjct: 153 K---ALLLVFERMAEGESETNGGDEDSNKS------PTFVVRLLVLSSQVGCLLGKGGSV 203
Query: 141 IKEL 144
IK++
Sbjct: 204 IKQM 207
>gi|358379880|gb|EHK17559.1| hypothetical protein TRIVIDRAFT_231881 [Trichoderma virens Gv29-8]
Length = 477
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 19/132 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGLKV 78
+ +R +I S A ++IGKGG N++ +R A TV D ERILT+ ++ K
Sbjct: 116 IHIRAVISSPEAATIIGKGGENVSNIRKMSNAKCTVSDYQKGAVERILTVSGIVDAVAKA 175
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
++ L+ + N Y +RL++ G IIGKGG
Sbjct: 176 FGLIIRTLNN---------------EPLNEASTA--SSKTYPLRLLIPHILIGSIIGKGG 218
Query: 139 TKIKELRDTFDA 150
++I+E+++ A
Sbjct: 219 SRIREIQEASGA 230
>gi|291415509|ref|XP_002723994.1| PREDICTED: KH-type splicing regulatory protein, partial
[Oryctolagus cuniculus]
Length = 349
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 68 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 123
Query: 85 ALDEIRQKYGKGRGGEDG--GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 124 MLDDI---VSRGRGGPPGQFHDSANGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 174
Query: 143 ELRD 146
+L++
Sbjct: 175 QLQE 178
>gi|441629120|ref|XP_003281628.2| PREDICTED: far upstream element-binding protein 2-like [Nomascus
leucogenys]
Length = 805
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ D V + PD G PER +++ E+ +++
Sbjct: 238 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES----VQKAKM 293
Query: 85 ALDEIRQKYGKGRGGEDG--GDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
LD+I +GRGG G D NGG G + + +++ +AG +IGKGG IK
Sbjct: 294 MLDDI---VSRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIK 344
Query: 143 ELRD 146
+L++
Sbjct: 345 QLQE 348
>gi|412993678|emb|CCO14189.1| predicted protein [Bathycoccus prasinos]
Length = 335
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 10/138 (7%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTIFAELENGLK 77
L++L+ SR AG+V+GKGG+ I L+ + + PG ER+LT+ EL + L
Sbjct: 28 LKMLVDSRNAGAVLGKGGATINELQTSTNCRIQLTRTGEVFPGTSERVLTLSGELPSVLT 87
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYD-----IRLIVHQSQAGC 132
+ + L E+ + + G ++ RL++ + AGC
Sbjct: 88 AVHLISTKLQSETNNGNNNNNNENNEENFENTNTNTEGGEENKQQTPKCRLVIPNAAAGC 147
Query: 133 IIGKGGTKIKELRDTFDA 150
++GKGG IK + +A
Sbjct: 148 VLGKGGATIKSFIEDSEA 165
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 65/151 (43%), Gaps = 29/151 (19%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-------PDCPGPERILTIFAELEN 74
+ RL+IP+ AG V+GKGG+ I D +A + + P C +RILTI +
Sbjct: 135 KCRLVIPNAAAGCVLGKGGATIKSFIEDSEAEIRLSSQNQAPPGC--HDRILTISGTIGQ 192
Query: 75 GLKVIEEVLPALDE-------------IRQKYGKGRGGE-DGGDGYNGGGVGGLGKDDYD 120
L+ + V L E R GRGG D G G+ + + D
Sbjct: 193 ILRAVALVAANLLEDQNYATLVKRPSTYRPSLDYGRGGSMDHGRGHYNNNHHHQQQHNVD 252
Query: 121 IRLIVHQ------SQAGCIIGKGGTKIKELR 145
+ +V S+ G I+GKGG I E++
Sbjct: 253 PQNVVSATMQVDDSKMGPILGKGGRTITEIQ 283
>gi|413935391|gb|AFW69942.1| hypothetical protein ZEAMMB73_108333 [Zea mays]
Length = 468
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 3/135 (2%)
Query: 13 RFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
R+ G P RL++P+ G +IG+ G I RL ++ +A V V D P + + +
Sbjct: 90 RWPGWPGASVFRLVVPADKVGGIIGRRGDTIKRLCDETRARVRVLDAPHGDGAFSRIVLV 149
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
+V E+ PA++ + + ED + G + + +RL+V +QA
Sbjct: 150 SAREEVEAELSPAMNAAIKIFKHINEIEDIN---SDGTLMAPAPEISSVRLLVPFAQALH 206
Query: 133 IIGKGGTKIKELRDT 147
+IGK G IK ++++
Sbjct: 207 VIGKQGVTIKSIQES 221
>gi|212723546|ref|NP_001131366.1| uncharacterized protein LOC100192689 [Zea mays]
gi|194691330|gb|ACF79749.1| unknown [Zea mays]
gi|413935393|gb|AFW69944.1| hypothetical protein ZEAMMB73_108333 [Zea mays]
Length = 467
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 3/135 (2%)
Query: 13 RFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
R+ G P RL++P+ G +IG+ G I RL ++ +A V V D P + + +
Sbjct: 90 RWPGWPGASVFRLVVPADKVGGIIGRRGDTIKRLCDETRARVRVLDAPHGDGAFSRIVLV 149
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
+V E+ PA++ + + ED + G + + +RL+V +QA
Sbjct: 150 SAREEVEAELSPAMNAAIKIFKHINEIEDIN---SDGTLMAPAPEISSVRLLVPFAQALH 206
Query: 133 IIGKGGTKIKELRDT 147
+IGK G IK ++++
Sbjct: 207 VIGKQGVTIKSIQES 221
>gi|414589867|tpg|DAA40438.1| TPA: hypothetical protein ZEAMMB73_485730 [Zea mays]
Length = 640
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 18/128 (14%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV--PDCPGPERILTIFAELENGLK 77
++ R++I + + GS+IGKGGS I L+++ A + + P ER++ I A EN
Sbjct: 249 EIVFRMIILNEMVGSIIGKGGSTIRALQSETGACIKILEPVADSDERVVAITAR-ENSDM 307
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKG 137
+ PA D + + Y + + RL+V GC++GKG
Sbjct: 308 LHS---PAQDAVVRVYSRISEASIDRSSHTPA------------RLLVPSQHIGCLLGKG 352
Query: 138 GTKIKELR 145
G+ I E+R
Sbjct: 353 GSIISEMR 360
>gi|402083824|gb|EJT78842.1| hypothetical protein GGTG_03937 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 373
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 20/130 (15%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPGPERILTIFAELENGLKV 78
+ +R ++ S+ AG +IGKGG N+A LR++ +A V+ +R+LTI + K
Sbjct: 46 LTVRAIVSSKEAGVIIGKGGKNVADLRDETGVRAGVSKVVQGVHDRVLTITGGCDAISKA 105
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDD--YDIRLIVHQSQAGCIIGK 136
V AL E G G+GG+ + + + I+L++ +Q G IIG+
Sbjct: 106 YAIVARALLE----------------GAPTLGMGGVVQSNGTHPIKLLISHNQMGTIIGR 149
Query: 137 GGTKIKELRD 146
G KIK ++D
Sbjct: 150 EGLKIKHIQD 159
>gi|350529341|ref|NP_001123831.2| KH-type splicing regulatory protein [Xenopus (Silurana) tropicalis]
Length = 675
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 14/122 (11%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ + V + PD G PER++++ ++ +++
Sbjct: 100 VPDGMVGLIIGRGGEQINKIQQESGCKVQISPDSGGMPERVVSLTGSPDS----VQKAKM 155
Query: 85 ALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKEL 144
LD+I +GRGG N G G ++ +++ +AG IIGKGG IK+L
Sbjct: 156 LLDDI---VARGRGGPPSQFHDNSNGQNGSLQE-----IMIPAGKAGLIIGKGGETIKQL 207
Query: 145 RD 146
++
Sbjct: 208 QE 209
>gi|393908932|gb|EFO19357.2| hypothetical protein LOAG_09137 [Loa loa]
Length = 265
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 22/82 (26%)
Query: 65 ILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLI 124
++ + A +EN ++ +E ++ +DE+ + D +++++
Sbjct: 22 VVQLVATVENVVRCVEMIIARIDEVHDNQDR----------------------DSELKVL 59
Query: 125 VHQSQAGCIIGKGGTKIKELRD 146
VHQS AG +IG+GG++IKELR+
Sbjct: 60 VHQSHAGAVIGRGGSRIKELRE 81
Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLR--NDFKASVTVPDCP-GPERILTIFAELENGL 76
D EL++L+ AG+VIG+GGS I LR N V CP ERI+ I + E +
Sbjct: 53 DSELKVLVHQSHAGAVIGRGGSRIKELREENGVDLKVYSECCPQSTERIIQINGKPEKIV 112
Query: 77 KVIEEVLPALDEI 89
+ ++ L EI
Sbjct: 113 ACLVTIISTLKEI 125
>gi|336367212|gb|EGN95557.1| hypothetical protein SERLA73DRAFT_186638 [Serpula lacrymans var.
lacrymans S7.3]
Length = 370
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 19/132 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PG-PERILTIFAELENGLKV 78
+ +R LI ++ A +IGKGGS++ +R A V V + PG PERIL + L+ K
Sbjct: 68 IHMRCLIVTQDASIIIGKGGSHVNEIREKSGARVMVSESIPGNPERILNVSGPLDAVSKA 127
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
++ +++ + ++ V G I+ ++ S+ G +IGK G
Sbjct: 128 FGLIVRRIND---------------EPFDVPSVP--GSRAVTIKFMIPNSRMGSVIGKQG 170
Query: 139 TKIKELRDTFDA 150
+KIKE++D A
Sbjct: 171 SKIKEIQDASGA 182
>gi|344276217|ref|XP_003409905.1| PREDICTED: poly(rC)-binding protein 4-like [Loxodonta africana]
Length = 362
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 14/104 (13%)
Query: 47 RNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGY 106
R A +T+ + PERI TI + + LDE +
Sbjct: 3 RGRSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDE-----------DLCAAPA 51
Query: 107 NGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
NGG + + +RL++ SQ G +IGK GTKIKE+R+T A
Sbjct: 52 NGGNIS---RPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGA 92
>gi|342880970|gb|EGU81981.1| hypothetical protein FOXB_07505 [Fusarium oxysporum Fo5176]
Length = 471
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 19/132 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGLKV 78
+ +R +I S A +VIGKGG N++ +R A TV D ERILT+ ++ K
Sbjct: 111 IHIRAVISSPEAATVIGKGGENVSNIRKLSNAKCTVSDYQKGAVERILTVSGIVDAVAKA 170
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
++ L+ + N Y +RL++ G IIGKGG
Sbjct: 171 FGLIIRTLNN---------------EPLNESSTA--SSKTYPLRLLIPHILIGSIIGKGG 213
Query: 139 TKIKELRDTFDA 150
+I+E+++ A
Sbjct: 214 ARIREIQEASGA 225
>gi|241651548|ref|XP_002411283.1| conserved hypothetical protein [Ixodes scapularis]
gi|215503913|gb|EEC13407.1| conserved hypothetical protein [Ixodes scapularis]
Length = 610
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 24/136 (17%)
Query: 18 PNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV---PDCPGPERILTIFAELEN 74
P+D LR+L+ S + G++IG+ G I ++ +A V V + E+++TI+ EN
Sbjct: 192 PSDFPLRILVLSDMVGAIIGRAGGTIRQITQQSRARVDVHRKENAGSLEKVITIYGNPEN 251
Query: 75 GLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCII 134
+++L + + +G + ++++ H + G II
Sbjct: 252 CSTACQKILEVMQQEASNTNRG---------------------EVPLKILAHNNLIGRII 290
Query: 135 GKGGTKIKELRDTFDA 150
GK G IK + + D
Sbjct: 291 GKSGNTIKRIMEQTDT 306
>gi|332023471|gb|EGI63714.1| Far upstream element-binding protein 1 [Acromyrmex echinatior]
Length = 731
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 47/157 (29%), Positives = 71/157 (45%), Gaps = 22/157 (14%)
Query: 9 SNFKRFRGGP-NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV----PDCPGPE 63
SN F GP N + +L+P G VIGKGG I +++ + A V + PG
Sbjct: 285 SNDSGFNHGPANSDGVEVLVPRAAVGVVIGKGGDMIKKIQAESGAKVQFQQGREEGPGDR 344
Query: 64 RILTI--FAELENGLKVIEEVLPAL---DEIRQKYGKGRGGEDGGDGYNGGG-------- 110
+ L +E + I+E++ ++ D+ R G GRG G+G+ G
Sbjct: 345 KCLLSGKHQAVEQARQRIQELIDSVMRRDDGRNNMG-GRGSGPRGNGFGGNRNPNEYGTW 403
Query: 111 ---VGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKEL 144
GG +D + V S+ G IIGKGG IK++
Sbjct: 404 DRRQGGPMQDKIETTFTVPSSKCGIIIGKGGETIKQI 440
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 8/130 (6%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKAS-VTVPDCPG-----PERILTIFAELENGL 76
+ ++IP G +IGKGG I +L+ A V + + P P RI ++E
Sbjct: 196 VEIMIPGPKVGLIIGKGGETIKQLQEKSGAKMVVIQEGPSQEQEKPLRITGDPQKVEYAK 255
Query: 77 KVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYD-IRLIVHQSQAGCIIG 135
+++ E++ A EI+ + GRG D Y+ G + D + ++V ++ G +IG
Sbjct: 256 QLVYELI-AEKEIQMFHRGGRGATDRTGNYSNDSGFNHGPANSDGVEVLVPRAAVGVVIG 314
Query: 136 KGGTKIKELR 145
KGG IK+++
Sbjct: 315 KGGDMIKKIQ 324
Score = 39.7 bits (91), Expect = 0.37, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 9/122 (7%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P ++ G +IG+GG I RL+ + + + P+ G PER+ T+ E + E VL
Sbjct: 107 VPDKMVGLIIGRGGEQITRLQTETGCKIQMAPESGGLPERVCTLTGSREAVNRAKELVLS 166
Query: 85 ALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKEL 144
+++ + G G G G G + +++ + G IIGKGG IK+L
Sbjct: 167 IVNQRSRSEGIGDMNMSGSGSGMMGHPGF-------VEIMIPGPKVGLIIGKGGETIKQL 219
Query: 145 RD 146
++
Sbjct: 220 QE 221
>gi|221058238|ref|XP_002261627.1| RNA binding protein [Plasmodium knowlesi strain H]
gi|194247632|emb|CAQ41032.1| RNA binding protein, putative [Plasmodium knowlesi strain H]
Length = 756
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 45/145 (31%), Positives = 60/145 (41%), Gaps = 37/145 (25%)
Query: 14 FRGGPNDVELR----LLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC---------- 59
+ G E+R LL+P+R G VIGK GSN+ + KA V C
Sbjct: 57 YTGSGTTTEMRIPYCLLLPNRAIGFVIGKSGSNVREIE---KACGAVIKCQKEFDISVYP 113
Query: 60 PGPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDY 119
P E+ILTIF + EN K +E VL + + EDG +
Sbjct: 114 PPSEKILTIFGKKENKKKALELVLGKSKTVMDFH-----EEDGKE--------------- 153
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKEL 144
I +IV IIG+ G+KI L
Sbjct: 154 SIVIIVPTRSIPIIIGQKGSKIAAL 178
>gi|393911660|gb|EJD76408.1| KH domain-containing protein [Loa loa]
Length = 635
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 18/136 (13%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD-------CPGPERILTI 68
G + + IP G VIGKGG I ++ + + P P RI
Sbjct: 175 GTGRQITQEMFIPGAKCGLVIGKGGETIKNIQEQTGVKMVMIQENQESGGQPKPLRITGD 234
Query: 69 FAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQS 128
++EN +++EE+L + R+ + G G G G GGG +G+ +IV ++
Sbjct: 235 PEKVENARRMVEEILQS----REDHPPGHFGFPGSFGI-GGGQRSIGE------VIVPRA 283
Query: 129 QAGCIIGKGGTKIKEL 144
G IIGKGG IK L
Sbjct: 284 SVGMIIGKGGETIKRL 299
>gi|9931476|gb|AAG02185.1| RNA binding protein MCG10 [Homo sapiens]
gi|119585575|gb|EAW65171.1| poly(rC) binding protein 4, isoform CRA_d [Homo sapiens]
gi|119585578|gb|EAW65174.1| poly(rC) binding protein 4, isoform CRA_d [Homo sapiens]
gi|119585579|gb|EAW65175.1| poly(rC) binding protein 4, isoform CRA_d [Homo sapiens]
Length = 369
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 14/100 (14%)
Query: 51 KASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGG 110
A +T+ + PERI TI + + LDE + NGG
Sbjct: 14 SARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDE-----------DLCAAPANGGN 62
Query: 111 VGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
V + +RL++ SQ G +IGK GTKIKE+R+T A
Sbjct: 63 VS---RPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGA 99
>gi|367019960|ref|XP_003659265.1| hypothetical protein MYCTH_2296066 [Myceliophthora thermophila ATCC
42464]
gi|347006532|gb|AEO54020.1| hypothetical protein MYCTH_2296066 [Myceliophthora thermophila ATCC
42464]
Length = 482
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 29/137 (21%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGLKV 78
+ +R +I S A ++IGKGG N++++R A TV D ERILT+ ++ K
Sbjct: 123 IHVRAVISSPEAATIIGKGGENVSKIRQMSGAKCTVSDYQKGAVERILTVSGIVDAVAKA 182
Query: 79 IEEVL-----PALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCI 133
++ L+E ++ K Y +RL++ G I
Sbjct: 183 FGLIIRTLNNEPLNEPSSQHSK----------------------TYPLRLLIPHILIGSI 220
Query: 134 IGKGGTKIKELRDTFDA 150
IGKGG +IKE+++ A
Sbjct: 221 IGKGGARIKEIQEASGA 237
>gi|339242773|ref|XP_003377312.1| poly(rC)-binding protein 3 [Trichinella spiralis]
gi|316973900|gb|EFV57443.1| poly(rC)-binding protein 3 [Trichinella spiralis]
Length = 410
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 28/124 (22%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
+RLL+ + GS+IGK A + + D PERI+TI ++ + +
Sbjct: 42 IRLLMQGKEVGSIIGKS-----------MAKINISDGTCPERIVTITGSVQAIDTAFKMI 90
Query: 83 LPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIK 142
+E +Q+ + K RLIV +Q GC+IG+GG+KIK
Sbjct: 91 CKKFEEDQQQIPDS-----------------VPKPPITFRLIVPATQCGCLIGRGGSKIK 133
Query: 143 ELRD 146
++R+
Sbjct: 134 DIRE 137
>gi|226529077|ref|NP_001146029.1| hypothetical protein [Zea mays]
gi|219885375|gb|ACL53062.1| unknown [Zea mays]
gi|414589866|tpg|DAA40437.1| TPA: hypothetical protein ZEAMMB73_485730 [Zea mays]
Length = 624
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 18/128 (14%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV--PDCPGPERILTIFAELENGLK 77
++ R++I + + GS+IGKGGS I L+++ A + + P ER++ I A EN
Sbjct: 249 EIVFRMIILNEMVGSIIGKGGSTIRALQSETGACIKILEPVADSDERVVAITAR-ENSDM 307
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKG 137
+ PA D + + Y + + RL+V GC++GKG
Sbjct: 308 LHS---PAQDAVVRVYSRISEASIDRSSHTPA------------RLLVPSQHIGCLLGKG 352
Query: 138 GTKIKELR 145
G+ I E+R
Sbjct: 353 GSIISEMR 360
>gi|449492545|ref|XP_004159029.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 716
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 15/126 (11%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
DV RLL GS+IGKGG+ + L+N+ AS+ + D P + L + + E +
Sbjct: 343 DVVFRLLCQPDKVGSLIGKGGTVVRALQNETGASIKIVDTPDLDERLVVISARET---LE 399
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ PA + + + + + GY G RL+VH Q G ++G+GG
Sbjct: 400 QTYSPAQEAVIRAHCR-----IAEIGYEPGAA-------VVARLLVHGQQIGYLVGRGGH 447
Query: 140 KIKELR 145
I ++R
Sbjct: 448 IINDMR 453
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 44/183 (24%), Positives = 70/183 (38%), Gaps = 49/183 (26%)
Query: 13 RFRGGPND--VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV------PDCPGPE- 63
R GG D V RLL PS G V+G+GG + ++R + A V + P C P+
Sbjct: 189 RISGGETDGLVVCRLLAPSHQVGRVLGRGGKTVEKIRQESMAHVKIFPKDQNPACASPQD 248
Query: 64 ---RILTIFAELENGLKVIEEVL---PALDEI--------------------------RQ 91
+I F+ + L + L P +D R+
Sbjct: 249 ELIQISGNFSAVMKALSSVSSCLQDSPRVDSSNSSSTKSLGPTSHASSMSVQDEEPSPRR 308
Query: 92 KYGKGRGGEDGGDGYN--------GGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKE 143
+YG + Y+ G G ++D RL+ + G +IGKGGT ++
Sbjct: 309 RYGSHHNADYRSRSYSSIPGHENAGAGPRAAMEEDVVFRLLCQPDKVGSLIGKGGTVVRA 368
Query: 144 LRD 146
L++
Sbjct: 369 LQN 371
>gi|395755641|ref|XP_002833191.2| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform
2, partial [Pongo abelii]
Length = 68
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 29/45 (64%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRND 49
+++ FKR R VELR L+ S+ AG+VIGKGG NI LR D
Sbjct: 24 MEEEQAFKRSRNTDEMVELRTLLQSKNAGAVIGKGGKNIKALRTD 68
>gi|392578180|gb|EIW71308.1| hypothetical protein TREMEDRAFT_42752 [Tremella mesenterica DSM
1558]
Length = 299
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 19/130 (14%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PG-PERILTIFAELENGLKVIE 80
+R LI ++ A +IGKGG+++ +R A VTV + PG PERIL + L+ K
Sbjct: 1 MRCLIVTQDASIIIGKGGAHVNDIRERSHARVTVSESIPGNPERILNVSGPLDAVAKAFG 60
Query: 81 EVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTK 140
++ +++ + ++ V G I+ I+ S+ G +IGK G K
Sbjct: 61 LIVRRIND---------------EPFDVASVPG--SRAVTIKFIIPNSRMGSVIGKQGAK 103
Query: 141 IKELRDTFDA 150
IKE+++ A
Sbjct: 104 IKEIQEASGA 113
>gi|343427422|emb|CBQ70949.1| related to PBP2-PAB1 binding protein [Sporisorium reilianum SRZ2]
Length = 416
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 63/128 (49%), Gaps = 19/128 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PG-PERILTIFAELENGLKV 78
+ +R LI + A +IGK G +I +R+ A + + + PG PERILT+ L+ K
Sbjct: 113 ISMRTLIVTSDASIIIGKSGKHINEIRDKSNARLNISEIIPGNPERILTVSGPLDAVSKA 172
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
++ +++ + ++ V G IR IV S+ G +IGK G
Sbjct: 173 FGLIVRRIND---------------EPFDQPSVPG--SKSVTIRFIVPNSRMGSVIGKQG 215
Query: 139 TKIKELRD 146
+KIKE+++
Sbjct: 216 SKIKEIQE 223
>gi|449448150|ref|XP_004141829.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 716
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 15/126 (11%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVI 79
DV RLL GS+IGKGG+ + L+N+ AS+ + D P + L + + E +
Sbjct: 343 DVVFRLLCQPDKVGSLIGKGGTVVRALQNETGASIKIVDTPDLDERLVVISARET---LE 399
Query: 80 EEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
+ PA + + + + + GY G RL+VH Q G ++G+GG
Sbjct: 400 QTYSPAQEAVIRAHCR-----IAEIGYEPGAA-------VVARLLVHGQQIGYLVGRGGH 447
Query: 140 KIKELR 145
I ++R
Sbjct: 448 IINDMR 453
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 44/183 (24%), Positives = 70/183 (38%), Gaps = 49/183 (26%)
Query: 13 RFRGGPND--VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV------PDCPGPE- 63
R GG D V RLL PS G V+G+GG + ++R + A V + P C P+
Sbjct: 189 RISGGETDGLVVCRLLAPSHQVGRVLGRGGKTVEKIRQESMAHVKIFPKDQNPACASPQD 248
Query: 64 ---RILTIFAELENGLKVIEEVL---PALDEI--------------------------RQ 91
+I F+ + L + L P +D R+
Sbjct: 249 ELIQISGNFSAVMKALSSVSSCLQDSPRVDSSNSSSTKSLGPTSHASSMSVQDEEPSPRR 308
Query: 92 KYGKGRGGEDGGDGYN--------GGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKE 143
+YG + Y+ G G ++D RL+ + G +IGKGGT ++
Sbjct: 309 RYGSHHNADYRSRSYSSIPGHENAGAGPRAAMEEDVVFRLLCQPDKVGSLIGKGGTVVRA 368
Query: 144 LRD 146
L++
Sbjct: 369 LQN 371
>gi|341903406|gb|EGT59341.1| hypothetical protein CAEBREN_22676 [Caenorhabditis brenneri]
Length = 925
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 21/135 (15%)
Query: 18 PNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVT------VPDCPGPERILTIFAE 71
P + + + IP+ GS+IGKGG + +LRN K +T + D P RI
Sbjct: 217 PKKITIDIPIPANKCGSIIGKGGETMKKLRNLSKCYITLIQENNLADSDKPLRITGDPKC 276
Query: 72 LENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAG 131
+E +++ E L +++ DG+ G GG + + V ++ G
Sbjct: 277 VEQARRLVAEFLVNVEDAPPT-----------DGFVANGSGG----QTTLHVHVPRTSVG 321
Query: 132 CIIGKGGTKIKELRD 146
I+G G IK+L D
Sbjct: 322 AIMGHKGCNIKKLSD 336
>gi|358400710|gb|EHK50036.1| hypothetical protein TRIATDRAFT_51252 [Trichoderma atroviride IMI
206040]
Length = 477
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 19/132 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGLKV 78
+ +R +I S A ++IGKGG N++ +R A TV D ERILT+ +
Sbjct: 118 IHIRAVISSPEAATIIGKGGENVSNIRKMSNAKCTVSDYQKGAVERILTVSG-------I 170
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
++ V A I + E Y +RL++ G IIGKGG
Sbjct: 171 VDAVAKAFGLIIRTLNNEPLSE----------ASTASSKTYPLRLLIPHILIGSIIGKGG 220
Query: 139 TKIKELRDTFDA 150
++I+E+++ A
Sbjct: 221 SRIREIQEASGA 232
>gi|452846671|gb|EME48603.1| hypothetical protein DOTSEDRAFT_67594 [Dothistroma septosporum
NZE10]
Length = 361
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 60/129 (46%), Gaps = 18/129 (13%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PG-PERILTIFAELENGLKV 78
+ LR ++ S+ AG +IGK G N+A LR V PG +R+LT+
Sbjct: 42 LTLRAIVTSKEAGVIIGKAGQNVADLREKTGVRAGVSKVVPGVHDRVLTVTG-------- 93
Query: 79 IEEVLPALDEIRQKYG-KGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKG 137
AL I YG G GGV G + + IRL++ +Q G IIG+
Sbjct: 94 ------ALTGIADAYGLVADSLVKGAPQMGMGGVVG-NPNTHPIRLLISHNQMGTIIGRQ 146
Query: 138 GTKIKELRD 146
G KIK+++D
Sbjct: 147 GLKIKQIQD 155
>gi|350529339|ref|NP_001121330.2| KH-type splicing regulatory protein precursor [Xenopus laevis]
Length = 732
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 24/127 (18%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ + V + PD G PER+++ L ++
Sbjct: 158 VPDGMVGLIIGRGGEQINKIQQESGCKVQISPDSGGMPERVVS----LTGSPDAVQNAKM 213
Query: 85 ALDEIRQKYGKGRGG-----EDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
LD+I +GRGG D +G NG +++ +AG IIGKGG
Sbjct: 214 LLDDI---VARGRGGPPSQFHDSSNGQNGSLQ----------EIMIPAGKAGLIIGKGGE 260
Query: 140 KIKELRD 146
IK+L++
Sbjct: 261 TIKQLQE 267
>gi|170060296|ref|XP_001865738.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167878802|gb|EDS42185.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 188
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 14/95 (14%)
Query: 52 ASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGV 111
A + + D PERI+T+ K + +E ++ +
Sbjct: 7 AKINISDGSCPERIVTVSGSRSAIYKAFTLITKKFEEWCSQFQDNTNAQ----------- 55
Query: 112 GGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRD 146
GK IRLIV SQ G +IGKGG+KIKE+R+
Sbjct: 56 ---GKTQIPIRLIVPASQCGSLIGKGGSKIKEIRE 87
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFAELE 73
G + +RL++P+ GS+IGKGGS I +R S+ V P ER +T+ +
Sbjct: 56 GKTQIPIRLIVPASQCGSLIGKGGSKIKEIREITGCSIQVASEMLPNSTERAVTLSGSAD 115
Query: 74 NGLKVIEEVLPALDEI 89
+ + I + + EI
Sbjct: 116 SITQCIYHICCVMLEI 131
>gi|118486946|gb|ABK95306.1| unknown [Populus trichocarpa]
Length = 313
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 62/128 (48%), Gaps = 24/128 (18%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD----CPG-PERILTIFAELENGLK 77
++LL+ + AGSVIGKGG+ I ++ A + + PG +RI+ I +++ LK
Sbjct: 37 IKLLVSNAAAGSVIGKGGATITDFQSQSGARIQLSKNYEFFPGTSDRIILISGGIDDALK 96
Query: 78 VIEEVLPA-LDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGK 136
+E ++ L EI EDG D + +RL+V + G IIGK
Sbjct: 97 ALELIIAKLLSEIPT--------EDGDD----------AEPRMRVRLVVPNNACGSIIGK 138
Query: 137 GGTKIKEL 144
GG+ IK
Sbjct: 139 GGSIIKSF 146
Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 15/139 (10%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVP----DCPG-PERILTIFAELENG 75
+ +RL++P+ GS+IGKGGS I + A + + D G +R++ I LE
Sbjct: 121 MRVRLVVPNNACGSIIGKGGSIIKSFIEESHAGIKISPLDTDFLGLTDRLVAITGTLEEQ 180
Query: 76 LKVIEEVLPALDE-------IRQKYGKGRGGEDGGDGYNGGGVG-GLGKDD--YDIRLIV 125
+ I+ +L L + + G NG GV K+D + + V
Sbjct: 181 MHAIDLILSKLTDDTHYLQNMHAPLSYAAAYNSTNHGLNGAGVKFQHNKEDRTNSVTIGV 240
Query: 126 HQSQAGCIIGKGGTKIKEL 144
G ++G+GG I E+
Sbjct: 241 ADEHIGLVVGRGGRNIMEI 259
>gi|71895775|ref|NP_001025686.1| neuro-oncological ventral antigen 2 [Xenopus (Silurana) tropicalis]
gi|62205009|gb|AAH93475.1| neuro-oncological ventral antigen 2 [Xenopus (Silurana) tropicalis]
Length = 413
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 12/130 (9%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTIFAELENGLK 77
L++LIPS AGS+IGKGG I +L+ + A++ + PG ER+ + E+ L
Sbjct: 36 LKVLIPSYAAGSIIGKGGQTIVQLQRETGATIKLSKSKDFYPGTTERVCLVQGSAESLLS 95
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKD-DYDIRLIVHQSQAGCIIGK 136
V + + E+ Q GG G + + +LIV + AG IIGK
Sbjct: 96 VHNFIAEKVREVPQ------GGTKNDLGVLLPPQTTINAERAKQAKLIVPNTTAGLIIGK 149
Query: 137 GGTKIKELRD 146
GG ++ + +
Sbjct: 150 GGATVRSIME 159
Score = 35.0 bits (79), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP-GP---ERILTIFAELENGLK 77
+ +L++P+ AG +IGKGG+ + + + A V + P GP ER++T+ E K
Sbjct: 133 QAKLIVPNTTAGLIIGKGGATVRSIMEESGAWVQLSQKPAGPNLHERVVTVSGEPSQVQK 192
Query: 78 VIEEVL 83
I ++
Sbjct: 193 AIRSII 198
>gi|413917022|gb|AFW56954.1| hypothetical protein ZEAMMB73_179405 [Zea mays]
Length = 632
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 23/129 (17%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--PERILTIFA-ELENGL 76
++E R+L P G VIG+GG+ I +R + A + V D E I+TI + E + +
Sbjct: 312 ELEFRVLCPGGKIGLVIGRGGATIKNIRQESGARIDVDDAKNDKEESIITIISTESTDDV 371
Query: 77 KVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGK 136
K A++ + K ED D ++RL+V GC+IG+
Sbjct: 372 KS-----AAVEAVLLLQAKINDSED---------------DRMNLRLLVPNKVIGCLIGR 411
Query: 137 GGTKIKELR 145
GG+ + ++R
Sbjct: 412 GGSIVNDMR 420
Score = 38.9 bits (89), Expect = 0.66, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPER 64
+ LRLL+P++V G +IG+GGS + +R KA++ + P R
Sbjct: 394 MNLRLLVPNKVIGCLIGRGGSIVNDMRKKTKANILISKGDKPRR 437
>gi|198425067|ref|XP_002127946.1| PREDICTED: similar to insulin-like growth factor 2 mRNA binding
protein 1 [Ciona intestinalis]
Length = 601
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 17/134 (12%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV--PDCPGP-ERILTIFAELENGL 76
D+ R+L+PS+ G++IGKGG +I + A + V D PG E+ +TI E
Sbjct: 193 DLPTRMLVPSQYVGAIIGKGGDSIRAITQKTHARIDVHRKDNPGATEKAITINGTPEACG 252
Query: 77 KVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGK 136
+ + LD +R + R G DD ++++ H S G +IGK
Sbjct: 253 AAVGAI---LDIVRDEDRNAR-----------QAAGTWNDDDIPLKILAHNSLIGRLIGK 298
Query: 137 GGTKIKELRDTFDA 150
G +K +++ +
Sbjct: 299 EGRNLKAIQEKVET 312
>gi|409045569|gb|EKM55049.1| hypothetical protein PHACADRAFT_95060 [Phanerochaete carnosa
HHB-10118-sp]
Length = 409
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 19/133 (14%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PG-PERILTIFAELENGLK 77
++ +R LI ++ A +IGK G+++ +R A V V + PG PERIL + L+ K
Sbjct: 109 NIHMRCLIVTQDASIIIGKAGTHVNEIREKSGARVMVSESIPGNPERILNVSGPLDAVSK 168
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKG 137
++ +++ + ++ V G I+ ++ S+ G +IGKG
Sbjct: 169 AFGLIVRRIND---------------EPFDKPSVPG--SRAVTIKFMIPNSRMGSVIGKG 211
Query: 138 GTKIKELRDTFDA 150
G KIKE++D A
Sbjct: 212 GAKIKEIQDASGA 224
>gi|255562910|ref|XP_002522460.1| nucleic acid binding protein, putative [Ricinus communis]
gi|223538345|gb|EEF39952.1| nucleic acid binding protein, putative [Ricinus communis]
Length = 559
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 13/139 (9%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--PERILTIFAELENGL- 76
D R L P R GS+IG+GG +LR++ K+++ + + ERI+TI++ E
Sbjct: 49 DTVYRYLCPLRKIGSIIGRGGEIAKQLRSESKSNIRISEAMAGFEERIVTIYSNSEESNL 108
Query: 77 --KVIEEVLPALDEIRQKYGK--------GRGGEDGGDGYNGGGVGGLGKDDYDIRLIVH 126
E V PA D + + + + D G + +R++V
Sbjct: 109 FGDSGEFVCPAQDALFMVHDRIIAEDLNNSNNNNEEEDDEEEEEFGESKEQVVTVRMLVP 168
Query: 127 QSQAGCIIGKGGTKIKELR 145
Q GC+IGKGG I+ +R
Sbjct: 169 ADQIGCVIGKGGQVIQSIR 187
>gi|226472246|emb|CAX77159.1| Heterogeneous nuclear ribonucleoprotein K [Schistosoma japonicum]
Length = 364
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 25/29 (86%)
Query: 120 DIRLIVHQSQAGCIIGKGGTKIKELRDTF 148
D R++VH+SQAG +IG+GG +IK+LRD +
Sbjct: 46 DFRILVHESQAGSVIGRGGERIKDLRDKY 74
Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASV-TVPDCPGP---ERILTIFAELEN 74
N ++ R+L+ AGSVIG+GG I LR+ +K V V P +R++ + A+ +N
Sbjct: 43 NMIDFRILVHESQAGSVIGRGGERIKDLRDKYKMRVIKVYQMLAPLSTDRVVQMVADPDN 102
Query: 75 GLKVIEEVLPALDE 88
++ + V+ A++
Sbjct: 103 VVQCLRAVIEAVES 116
>gi|302926012|ref|XP_003054209.1| hypothetical protein NECHADRAFT_30745 [Nectria haematococca mpVI
77-13-4]
gi|256735150|gb|EEU48496.1| hypothetical protein NECHADRAFT_30745 [Nectria haematococca mpVI
77-13-4]
Length = 472
Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 19/132 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGLKV 78
+ +R +I S A +VIGKGG N++ +R A TV D ERILT+ +
Sbjct: 112 IHIRAVISSPEAATVIGKGGENVSNIRKLSNARCTVSDYQKGAVERILTVSG-------I 164
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
++ V A I + E Y +RL++ G IIGKGG
Sbjct: 165 VDAVAKAFGLIIRTLNNEPLNESSTS----------SSKTYPLRLLIPHILIGSIIGKGG 214
Query: 139 TKIKELRDTFDA 150
+I+E+++ A
Sbjct: 215 ARIREIQEASGA 226
>gi|340521021|gb|EGR51256.1| predicted protein [Trichoderma reesei QM6a]
Length = 475
Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 19/132 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGLKV 78
+ +R +I S A ++IGKGG N++ +R A TV D ERILT+ +
Sbjct: 119 IHIRAVISSPEAATIIGKGGENVSNIRKMSNAKCTVSDYQKGAVERILTVSG-------I 171
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
++ V A I + E Y +RL++ G IIGKGG
Sbjct: 172 VDAVAKAFGLIIRTLNNEPLTE----------ASTASSKTYPLRLLIPHILIGSIIGKGG 221
Query: 139 TKIKELRDTFDA 150
++I+E+++ A
Sbjct: 222 SRIREIQEASGA 233
>gi|443926268|gb|ELU44971.1| cytoplasmic protein [Rhizoctonia solani AG-1 IA]
Length = 389
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 19/132 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PG-PERILTIFAELENGLKV 78
+ +R LI ++ A +IGK G ++ +R A V V + PG PERIL + L+ K
Sbjct: 69 IHMRCLIVTQDASIIIGKAGKHVNEIREKSGARVMVSESIPGNPERILNVSGPLDAVSKS 128
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
++ +++ + ++ V G I+ I+ S+ G +IG+GG
Sbjct: 129 FGLIVRRIND---------------EPFDTPSVPG--SRAVTIKFIIPHSRMGSVIGRGG 171
Query: 139 TKIKELRDTFDA 150
+KIKE++D A
Sbjct: 172 SKIKEIQDASGA 183
>gi|70989551|ref|XP_749625.1| KH domain RNA binding protein [Aspergillus fumigatus Af293]
gi|66847256|gb|EAL87587.1| KH domain RNA binding protein [Aspergillus fumigatus Af293]
Length = 464
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 19/132 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGLKV 78
+ +R +I S+ A +VIGKGG N++++R A TV D ERILT+ + K
Sbjct: 112 IHIRAVISSQEAATVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSGPQDAVAKA 171
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
++ L+ + D + Y +RL++ G IIGKGG
Sbjct: 172 FGLIIRTLN------------NEPLDAPSTA-----QSKTYPLRLLIPHLLIGSIIGKGG 214
Query: 139 TKIKELRDTFDA 150
++I+E+++ A
Sbjct: 215 SRIREIQEASGA 226
>gi|400603119|gb|EJP70717.1| KH domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 464
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 19/132 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGLKV 78
+ +R +I S A ++IGKGG N++ +R A TV D ERILT+ +
Sbjct: 107 IHIRAVISSPEAATIIGKGGENVSNIRKMSNAKCTVSDYQKGAVERILTVSG-------I 159
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
++ V A I + E Y +RL++ G IIGKGG
Sbjct: 160 VDAVAKAFGLIIRTLNNEALTE----------TSTASSKTYPLRLLIPHILIGSIIGKGG 209
Query: 139 TKIKELRDTFDA 150
+I+E+++ A
Sbjct: 210 ARIREIQEASGA 221
>gi|332025247|gb|EGI65421.1| Insulin-like growth factor 2 mRNA-binding protein 1 [Acromyrmex
echinatior]
Length = 568
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 24/137 (17%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV--PDCPGP-ERILTIFAEL 72
G D LR+L+ S + G++IG+ GS I ++ +A V V D G E+ +TI+
Sbjct: 116 GRQTDFPLRILVQSDMVGAIIGRQGSTIRQITQMTRARVDVHRKDNVGSLEKAITIYGNP 175
Query: 73 ENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGC 132
EN +++L + + KG + ++++ H + G
Sbjct: 176 ENCTNACKKILEVMQQEANNTNKG---------------------EITLKILAHNNLIGR 214
Query: 133 IIGKGGTKIKELRDTFD 149
IIGKGG IK + D
Sbjct: 215 IIGKGGNTIKRIMQDTD 231
Score = 35.8 bits (81), Expect = 6.0, Method: Composition-based stats.
Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 26/128 (20%)
Query: 25 LLIPSRVAGSVIGKGGSNIARLRNDFKASVTVP----DCPG---PERILTIFAELENGLK 77
L IP+ G++IG GS+I + ASV + D P ER +TI E+ K
Sbjct: 343 LYIPNNSVGAIIGTKGSHIRNIIRFSGASVKIAPLEQDKPAEQQTERKVTIVGSPESQWK 402
Query: 78 VIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKG 137
+ + E +GY V G I ++V +Q G IIGKG
Sbjct: 403 AQYLIFEKMRE---------------EGY----VAGTEDVRLTIEILVPSTQVGRIIGKG 443
Query: 138 GTKIKELR 145
G ++EL+
Sbjct: 444 GQNVRELQ 451
>gi|119480179|ref|XP_001260118.1| KH domain RNA binding protein [Neosartorya fischeri NRRL 181]
gi|119408272|gb|EAW18221.1| KH domain RNA binding protein [Neosartorya fischeri NRRL 181]
Length = 464
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 19/132 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGLKV 78
+ +R +I S+ A +VIGKGG N++++R A TV D ERILT+ + K
Sbjct: 112 IHIRAVISSQEAATVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSGPQDAVAKA 171
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
++ L+ + D + Y +RL++ G IIGKGG
Sbjct: 172 FGLIIRTLN------------NEPLDAPSTA-----QSKTYPLRLLIPHLLIGSIIGKGG 214
Query: 139 TKIKELRDTFDA 150
++I+E+++ A
Sbjct: 215 SRIREIQEASGA 226
>gi|308804768|ref|XP_003079696.1| putative KH domain containing protein (ISS) [Ostreococcus tauri]
gi|116058152|emb|CAL53341.1| putative KH domain containing protein (ISS), partial [Ostreococcus
tauri]
Length = 709
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 19/132 (14%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CPGPERILTIFAELEN 74
G ++ RLL P GSVIG+ G I ++R++ A V V + ERI+ + + ++
Sbjct: 339 GGTEIMFRLLCPVSKTGSVIGRNGEVIQQIRSETGAKVKVCEQINNAEERIICVSSN-DD 397
Query: 75 GLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCII 134
GL + AL + + G + RL+V SQ GC+I
Sbjct: 398 GLAPMLAAQVALFRVYRCIVDSSGSDV----------------PLPFRLLVQTSQIGCLI 441
Query: 135 GKGGTKIKELRD 146
GKGG+ I+++R+
Sbjct: 442 GKGGSIIRQIRN 453
Score = 36.6 bits (83), Expect = 3.1, Method: Composition-based stats.
Identities = 48/150 (32%), Positives = 62/150 (41%), Gaps = 25/150 (16%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPGPERILTIFAELE------ 73
V+ RLL P G VIGK G I LR + A V V P G + + + A E
Sbjct: 70 VQFRLLCPVARIGRVIGKEGRVIKALRAETGARVKVAPTTRGADERVVLVASGEELMMDD 129
Query: 74 -NGLKV-IEEVLPALDEIRQKYGKGRGG-----EDGGDGYNGGGV------GGL-----G 115
+G V + AL I GG DG +G GV GG G
Sbjct: 130 GDGSDVPVTTAERALFRIFDTVASESGGALDGTRDGTSSESGSGVPESSSTGGERSMNGG 189
Query: 116 KDDYDIRLIVHQSQAGCIIGKGGTKIKELR 145
+ RL+V ++Q G +IGKGG I +R
Sbjct: 190 RAVPICRLLVPRAQVGSLIGKGGAVISAIR 219
>gi|255071283|ref|XP_002507723.1| predicted protein [Micromonas sp. RCC299]
gi|226522998|gb|ACO68981.1| predicted protein [Micromonas sp. RCC299]
Length = 287
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 26/136 (19%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PGP-ERILTIFAELEN 74
++ L+ L+P AGS+IGKGG+ + L++ + + + PG +RI+T++ +
Sbjct: 2 NITLKFLLPDSAAGSIIGKGGATVNELQSQTGSRIQLSRATEVFPGTKDRIVTVYGTAPS 61
Query: 75 GLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCII 134
L ++ L R GE G VGG ++L++ + GCII
Sbjct: 62 ILGAFHLMISKLV---------RDGE--------GLVGG----RPHVKLVIPNASCGCII 100
Query: 135 GKGGTKIKELRDTFDA 150
G+GG I+ D A
Sbjct: 101 GRGGATIRNFADDSQA 116
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD----CPG-PERILTIFAELENGL 76
++L+IP+ G +IG+GG+ I +D +A + + PG ER+LTI + L
Sbjct: 86 HVKLVIPNASCGCIIGRGGATIRNFADDSQAEIKLSSQEHMLPGVNERVLTITGANDRVL 145
Query: 77 KVIEEVLPALDE 88
+ I V AL +
Sbjct: 146 RAIALVATALSQ 157
>gi|392597310|gb|EIW86632.1| cytoplasmic protein [Coniophora puteana RWD-64-598 SS2]
Length = 328
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 22/134 (16%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRND--FKASVTVPDCPG-PERILTIFAELE 73
G + + LR L+ ++ AG +IGK G N+A LR+ KA V+ PG ER+LT+ +E
Sbjct: 22 GNDTLTLRALVSTKEAGVIIGKAGKNVADLRDQTGVKAGVS-KVIPGVHERVLTVGGSVE 80
Query: 74 NGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDY-DIRLIVHQSQAGC 132
K ++ L E N V + IRL++ + G
Sbjct: 81 AVAKAYTLIIAQLVE-----------------SNPTSVSMSSPSPHTSIRLLISHNLMGT 123
Query: 133 IIGKGGTKIKELRD 146
IIG+ G KIK ++D
Sbjct: 124 IIGRNGLKIKAIQD 137
>gi|159129031|gb|EDP54145.1| KH domain RNA binding protein [Aspergillus fumigatus A1163]
Length = 464
Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 19/132 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGLKV 78
+ +R +I S+ A +VIGKGG N++++R A TV D ERILT+ + K
Sbjct: 112 IHIRAVISSQEAATVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSGPQDAVAKA 171
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
++ L+ + D + Y +RL++ G IIGKGG
Sbjct: 172 FGLIIRTLN------------NEPLDAPSTA-----QSKTYPLRLLIPHLLIGSIIGKGG 214
Query: 139 TKIKELRDTFDA 150
++I+E+++ A
Sbjct: 215 SRIREIQEASGA 226
>gi|393911661|gb|EJD76409.1| KH domain-containing protein, variant [Loa loa]
Length = 582
Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 18/136 (13%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD-------CPGPERILTI 68
G + + IP G VIGKGG I ++ + + P P RI
Sbjct: 122 GTGRQITQEMFIPGAKCGLVIGKGGETIKNIQEQTGVKMVMIQENQESGGQPKPLRITGD 181
Query: 69 FAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQS 128
++EN +++EE+L + R+ + G G G G GGG +G+ +IV ++
Sbjct: 182 PEKVENARRMVEEILQS----REDHPPGHFGFPGSFGI-GGGQRSIGE------VIVPRA 230
Query: 129 QAGCIIGKGGTKIKEL 144
G IIGKGG IK L
Sbjct: 231 SVGMIIGKGGETIKRL 246
>gi|326513114|dbj|BAK06797.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 627
Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 24/131 (18%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV--PDCPGPERILTIFAELENGLK 77
++ R++ + + G VIGKGGS I L+++ ASV V P ERI+ I A EN
Sbjct: 251 EIVFRMICLNDMVGGVIGKGGSTIRALQSETGASVKVIDPVADSDERIIVISAR-EN--- 306
Query: 78 VIEEVL--PALDEIRQKYGK-GRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCII 134
E++ P+ D + + Y K D RL+V GC++
Sbjct: 307 --SEMMRSPSQDALLRVYSKISEASMDKSSSVPA-------------RLLVPAQHIGCLL 351
Query: 135 GKGGTKIKELR 145
GKGG+ I E+R
Sbjct: 352 GKGGSIIAEMR 362
>gi|170036665|ref|XP_001846183.1| igf2 mRNA binding protein [Culex quinquefasciatus]
gi|167879496|gb|EDS42879.1| igf2 mRNA binding protein [Culex quinquefasciatus]
Length = 520
Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 24/133 (18%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV--PDCPGP-ERILTIFAELENGL 76
D LRLL+ S + G++IG+ GS I ++ + +A V V D G E+ +TI+ EN
Sbjct: 125 DFPLRLLVASEMVGAIIGRQGSTIRQITQNSRARVDVHRKDNVGSLEKAITIYGNPENCT 184
Query: 77 KVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGK 136
+ +L + + KG + ++++ H + G IIGK
Sbjct: 185 SACKRILEVMQQEANNTNKG---------------------EICLKILAHNNLIGRIIGK 223
Query: 137 GGTKIKELRDTFD 149
G IK + D
Sbjct: 224 SGNTIKRIMQDTD 236
>gi|225443339|ref|XP_002264125.1| PREDICTED: KH domain-containing protein At4g18375 [Vitis vinifera]
gi|297735779|emb|CBI18466.3| unnamed protein product [Vitis vinifera]
Length = 704
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 16/127 (12%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PGPERILTIFAELENGLKV 78
+V +LL GS+IGKGGS I L+++ AS+ + D P + + + + EN +
Sbjct: 327 EVVFKLLCHFEKVGSLIGKGGSIIRFLQSETGASIKIADAAPDSDERVVVISAREN---L 383
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
++ PA D + + + R E G + G V RL+VH Q GC++GKGG
Sbjct: 384 EQKHSPAQDAVIRVHC--RIAEIGFE--PGAAVVA--------RLLVHSQQIGCLLGKGG 431
Query: 139 TKIKELR 145
I E+R
Sbjct: 432 IIISEMR 438
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 64/173 (36%), Gaps = 47/173 (27%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV------PDC--PGPE--RILTIFA 70
V RLL PS G V+G+GG + ++R + A + V P C PG E +I F
Sbjct: 183 VCCRLLAPSNQVGCVLGRGGKIVEKIRQESGAQIRVLPKDHIPACASPGDELIQITGTFP 242
Query: 71 ELENGLKVIEEVL---PALDEIRQKYGKGRGGEDGGDGYNG--------GGVGGLGKDDY 119
+ L ++ L P D K GG G+G G G L DY
Sbjct: 243 AVRKALLLVSSCLQDNPRADATNSAAAKPTGGMLHGNGMPGQLDSFPQRGYGSSLHGPDY 302
Query: 120 DIR--------------------------LIVHQSQAGCIIGKGGTKIKELRD 146
R L+ H + G +IGKGG+ I+ L+
Sbjct: 303 HSRGYSSMPGPENIGANHRMVLEEEVVFKLLCHFEKVGSLIGKGGSIIRFLQS 355
>gi|357485457|ref|XP_003613016.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355514351|gb|AES95974.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 596
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 23/149 (15%)
Query: 9 SNFKR--FRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC--PGPER 64
+N KR F+ P + RL+ S G +IG GS +++LR + + D +R
Sbjct: 25 NNRKRPVFKLLPGQIAFRLVCHSSTVGGLIGSSGSIVSQLRRETGCKIHCEDAVVGTDDR 84
Query: 65 ILTIFAELENGLKVI-----EEVLPALDEIRQKYGK--GRGGEDGGDGYNGGGVGGLGKD 117
++ + + + ++ EV A + + + + + G E GG+G G
Sbjct: 85 VILVIGSMSDRKGIVLGDREMEVSNAQEGVVRVFDRVWGLESEKGGNGEVYG-------- 136
Query: 118 DYDIRLIVHQSQAGCIIGKGGTKIKELRD 146
+L+ H SQ G I+GKGG I +R+
Sbjct: 137 ----KLLAHSSQVGAIVGKGGKNISNIRN 161
Score = 40.8 bits (94), Expect = 0.21, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 15 RGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP 62
+GG +V +LL S G+++GKGG NI+ +RN+ +++ V CP P
Sbjct: 128 KGGNGEVYGKLLAHSSQVGAIVGKGGKNISNIRNNSGSNIRV--CPAP 173
>gi|171847306|gb|AAI61696.1| LOC100158419 protein [Xenopus laevis]
Length = 674
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 24/127 (18%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ + V + PD G PER+++ L ++
Sbjct: 100 VPDGMVGLIIGRGGEQINKIQQESGCKVQISPDSGGMPERVVS----LTGSPDAVQNAKM 155
Query: 85 ALDEIRQKYGKGRGG-----EDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
LD+I +GRGG D +G NG +++ +AG IIGKGG
Sbjct: 156 LLDDI---VARGRGGPPSQFHDSSNGQNGSLQ----------EIMIPAGKAGLIIGKGGE 202
Query: 140 KIKELRD 146
IK+L++
Sbjct: 203 TIKQLQE 209
>gi|346322193|gb|EGX91792.1| KH domain RNA binding protein [Cordyceps militaris CM01]
Length = 464
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 19/132 (14%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGLKV 78
+ +R +I S A ++IGKGG N++ +R A TV D ERILT+ ++ K
Sbjct: 107 IHIRAVISSPEAATIIGKGGENVSNIRKMSNAKCTVSDYQKGAVERILTVSGIVDAAAKA 166
Query: 79 IEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
++ L+ Y +RL++ G IIGKGG
Sbjct: 167 FGLIIRTLNNEPLTE-----------------TSTASSKTYPLRLLIPHILIGSIIGKGG 209
Query: 139 TKIKELRDTFDA 150
+I+E+++ A
Sbjct: 210 ARIREIQEASGA 221
>gi|147902659|ref|NP_001083916.1| RNA-binding protein VgRBP71 [Xenopus laevis]
gi|25992561|gb|AAN77160.1| RNA-binding protein VgRBP71 [Xenopus laevis]
gi|213625145|gb|AAI69923.1| RNA-binding protein VgRBP71 [Xenopus laevis]
Length = 672
Score = 44.7 bits (104), Expect = 0.015, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 24/127 (18%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELENGLKVIEEVLP 84
+P + G +IG+GG I +++ + V + PD G PERI++ L +++
Sbjct: 100 VPDGMVGLIIGRGGEQINKIQQESGCKVQISPDSGGMPERIVS----LTGNPDAVQKAKM 155
Query: 85 ALDEIRQKYGKGRGG-----EDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGT 139
LD+I +GRGG D +G NG +++ +AG IIGKGG
Sbjct: 156 LLDDIVL---RGRGGPPSQFHDSSNGQNGSLQ----------EIMIPAGKAGLIIGKGGE 202
Query: 140 KIKELRD 146
IK+L++
Sbjct: 203 TIKQLQE 209
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.145 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,788,445,877
Number of Sequences: 23463169
Number of extensions: 135569001
Number of successful extensions: 874881
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1231
Number of HSP's successfully gapped in prelim test: 1178
Number of HSP's that attempted gapping in prelim test: 860335
Number of HSP's gapped (non-prelim): 12254
length of query: 150
length of database: 8,064,228,071
effective HSP length: 113
effective length of query: 37
effective length of database: 9,707,857,270
effective search space: 359190718990
effective search space used: 359190718990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 71 (32.0 bits)