BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7546
(150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VKE|A Chain A, Contribution Of The First K-Homology Domain Of
Poly(C)-Binding Protein 1 To Its Affinity And
Specificity For C-Rich Oligonucleotides
pdb|3VKE|B Chain B, Contribution Of The First K-Homology Domain Of
Poly(C)-Binding Protein 1 To Its Affinity And
Specificity For C-Rich Oligonucleotides
pdb|3VKE|C Chain C, Contribution Of The First K-Homology Domain Of
Poly(C)-Binding Protein 1 To Its Affinity And
Specificity For C-Rich Oligonucleotides
pdb|3VKE|D Chain D, Contribution Of The First K-Homology Domain Of
Poly(C)-Binding Protein 1 To Its Affinity And
Specificity For C-Rich Oligonucleotides
Length = 76
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
+RLL+ + GS+IGK G ++ R+R + A + + + PERI+T+ K +
Sbjct: 5 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNSPERIITLTGPTNAIFKAFAMI 64
Query: 83 LPALDE 88
+ L+E
Sbjct: 65 IDKLEE 70
>pdb|1ZTG|A Chain A, Human Alpha Polyc Binding Protein Kh1
pdb|1ZTG|B Chain B, Human Alpha Polyc Binding Protein Kh1
pdb|1ZTG|C Chain C, Human Alpha Polyc Binding Protein Kh1
pdb|1ZTG|D Chain D, Human Alpha Polyc Binding Protein Kh1
Length = 74
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
+RLL+ + GS+IGK G ++ R+R + A + + + PERI+T+ K +
Sbjct: 5 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMI 64
Query: 83 LPALDE 88
+ L+E
Sbjct: 65 IDKLEE 70
>pdb|2ANN|A Chain A, Crystal Structure (I) Of Nova-1 Kh1KH2 DOMAIN TANDEM
WITH 25 NT RNA Hairpin
Length = 178
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTIFAELE 73
L++LIPS AGS+IGKGG I +L+ + A++ + PG ER+ I +E
Sbjct: 8 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIE 63
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG----PERILTIFAELENGLK 77
++++++P+ AG +IGKGG+ + + A V + P R++T+ E E K
Sbjct: 105 QVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQNRVVTVSGEPEQNRK 164
Query: 78 VIEEVLPALDE 88
+E ++ + E
Sbjct: 165 AVELIIQKIQE 175
>pdb|2ANR|A Chain A, Crystal Structure (Ii) Of Nova-1 Kh1KH2 DOMAIN TANDEM
WITH 25NT RNA Hairpin
Length = 178
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PG-PERILTIFAELE 73
L++LIPS AGS+IGKGG I +L+ + A++ + PG ER+ I +E
Sbjct: 8 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIE 63
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG----PERILTIFAELENGLK 77
++++++P+ AG +IGKGG+ + + A V + P R++T+ E E K
Sbjct: 105 QVKIIVPNSTAGLIIGKGGATVKAIXEQSGAWVQLSQKPDGINLQNRVVTVSGEPEQNRK 164
Query: 78 VIEEVLPALDE 88
+E ++ + E
Sbjct: 165 AVELIIQKIQE 175
>pdb|1J5K|A Chain A, Complex Of The Kh3 Domain Of Hnrnp K With A
Single_stranded 10mer Dna Oligonucleotide
Length = 89
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV--PDCPGPERILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + P +RI+TI
Sbjct: 10 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITI 63
>pdb|2JZX|A Chain A, Pcbp2 Kh1-Kh2 Domains
Length = 160
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 36/66 (54%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
+RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+ K +
Sbjct: 7 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMI 66
Query: 83 LPALDE 88
+ L+E
Sbjct: 67 IDKLEE 72
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
V LRL++P+ GS+IGKGG I +R A V V
Sbjct: 89 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 124
>pdb|2AXY|A Chain A, Crystal Structure Of Kh1 Domain Of Human Poly(C)-Binding
Protein-2 With C-Rich Strand Of Human Telomeric Dna
pdb|2AXY|B Chain B, Crystal Structure Of Kh1 Domain Of Human Poly(C)-Binding
Protein-2 With C-Rich Strand Of Human Telomeric Dna
pdb|2AXY|C Chain C, Crystal Structure Of Kh1 Domain Of Human Poly(C)-Binding
Protein-2 With C-Rich Strand Of Human Telomeric Dna
pdb|2AXY|D Chain D, Crystal Structure Of Kh1 Domain Of Human Poly(C)-Binding
Protein-2 With C-Rich Strand Of Human Telomeric Dna
pdb|2PQU|A Chain A, Crystal Structure Of Kh1 Domain Of Human Pcbp2 Complexed
To Single- Stranded 12-Mer Telomeric Dna
pdb|2PQU|B Chain B, Crystal Structure Of Kh1 Domain Of Human Pcbp2 Complexed
To Single- Stranded 12-Mer Telomeric Dna
pdb|2PQU|C Chain C, Crystal Structure Of Kh1 Domain Of Human Pcbp2 Complexed
To Single- Stranded 12-Mer Telomeric Dna
pdb|2PQU|D Chain D, Crystal Structure Of Kh1 Domain Of Human Pcbp2 Complexed
To Single- Stranded 12-Mer Telomeric Dna
pdb|2PY9|A Chain A, Protein-Rna Interaction Involving Kh1 Domain From Human
Poly(C)-Binding Protein-2
pdb|2PY9|B Chain B, Protein-Rna Interaction Involving Kh1 Domain From Human
Poly(C)-Binding Protein-2
pdb|2PY9|C Chain C, Protein-Rna Interaction Involving Kh1 Domain From Human
Poly(C)-Binding Protein-2
pdb|2PY9|D Chain D, Protein-Rna Interaction Involving Kh1 Domain From Human
Poly(C)-Binding Protein-2
Length = 73
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
+RLL + GS+IGK G ++ + R + A + + + PERI+T+ K +
Sbjct: 7 IRLLXHGKEVGSIIGKKGESVKKXREESGARINISEGNCPERIITLAGPTNAIFKAFAXI 66
Query: 83 LPALDE 88
+ L+E
Sbjct: 67 IDKLEE 72
>pdb|1ZZI|A Chain A, Crystal Structure Analysis Of The Third Kh Domain Of
Hnrnp K In Complex With Ssdna
pdb|1ZZI|B Chain B, Crystal Structure Analysis Of The Third Kh Domain Of
Hnrnp K In Complex With Ssdna
pdb|1ZZJ|A Chain A, Structure Of The Third Kh Domain Of Hnrnp K In Complex
With 15-Mer Ssdna
pdb|1ZZJ|B Chain B, Structure Of The Third Kh Domain Of Hnrnp K In Complex
With 15-Mer Ssdna
pdb|1ZZJ|C Chain C, Structure Of The Third Kh Domain Of Hnrnp K In Complex
With 15-Mer Ssdna
pdb|1ZZK|A Chain A, Crystal Structure Of The Third Kh Domain Of Hnrnp K At
0.95a Resolution
Length = 82
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV--PDCPGPERILTI 68
+ ++ IP +AGS+IGKGG I ++R++ AS+ + P +RI+TI
Sbjct: 7 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITI 56
>pdb|3KRM|A Chain A, Imp1 Kh34
pdb|3KRM|B Chain B, Imp1 Kh34
pdb|3KRM|C Chain C, Imp1 Kh34
Length = 163
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 17 GPND---VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPE 63
GP + +E + +P+ AG VIGKGG + L+N A V VP P+
Sbjct: 78 GPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPD 127
Score = 30.0 bits (66), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV--PDCP 60
+++ IP++ G++IGK G +I +L AS+ + P+ P
Sbjct: 5 VQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETP 44
>pdb|1KHM|A Chain A, C-Terminal Kh Domain Of Hnrnp K (Kh3)
Length = 89
Score = 34.3 bits (77), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV--PDCPGPERILTI 68
GGP + ++ IP +A S+IGKGG I ++R++ AS+ + P +RI+TI
Sbjct: 10 GGPI-ITTQVTIPKDLARSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITI 63
>pdb|2JVZ|A Chain A, Solution Nmr Structure Of The Second And Third Kh Domains
Of Ksrp
Length = 164
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTVP--DCPGPERILTIFA---ELENGLKVIEE 81
+P G VIG+ G I +++ND + D GPE+I I E+ ++I +
Sbjct: 97 VPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIIND 156
Query: 82 VLPAL 86
+L +L
Sbjct: 157 LLQSL 161
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 25 LLIPSRVAGSVIGKGGSNIARLR 47
++IP+ AG VIGKGG I +L+
Sbjct: 6 IMIPAGKAGLVIGKGGETIKQLQ 28
>pdb|2OPV|A Chain A, Solution Nmr Structure Of The Second Domain Of Ksrp
Length = 85
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLR 47
GG N ++IP+ AG VIGKGG I +L+
Sbjct: 9 GGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQ 40
>pdb|4B8T|A Chain A, Rna Binding Protein Solution Structure Of The Third Kh
Domain Of Ksrp In Complex With The G-rich Target
Sequence
Length = 106
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTVP--DCPGPERILTIFA---ELENGLKVIEE 81
+P G VIG+ G I +++ND + D GPE+I I E+ ++I +
Sbjct: 17 VPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIIND 76
Query: 82 VLPAL 86
+L +L
Sbjct: 77 LLQSL 81
>pdb|1VIG|A Chain A, Nmr Study Of Vigilin, Repeat 6, 40 Structures
pdb|1VIH|A Chain A, Nmr Study Of Vigilin, Repeat 6, Minimized Average
Structure
Length = 71
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTVP 57
I + +IGK G+NI R+++ +K SV +P
Sbjct: 11 IDHKFHRHLIGKSGANINRIKDQYKVSVRIP 41
>pdb|2HH3|A Chain A, Solution Structure Of The Third Kh Domain Of Ksrp
Length = 106
Score = 30.4 bits (67), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTVP--DCPGPERILTIFA---ELENGLKVIEE 81
+P G VIG+ G I +++ND + D GPE+I I E+ ++I +
Sbjct: 17 VPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIIND 76
Query: 82 VLPAL 86
+L +L
Sbjct: 77 LLQSL 81
>pdb|2OPU|A Chain A, Solution Nmr Structure Of The First Domain Of Ksrp
Length = 89
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELEN 74
+P + G +IG+GG I +++ D V + PD G PER +++ E+
Sbjct: 22 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPES 71
>pdb|1X4N|A Chain A, Solution Structure Of Kh Domain In Fuse Binding Protein
1
Length = 92
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDCPG-PERILTIFAELEN 74
+P + G +IG+GG I+R++ + + + PD G PER + E+
Sbjct: 21 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPES 70
>pdb|1X4M|A Chain A, Solution Structure Of Kh Domain In Far Upstream Element
Binding Protein 1
Length = 94
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 25 LLIPSRVAGSVIGKGGSNIARLR 47
++IP+ AG VIGKGG I +L+
Sbjct: 19 IMIPASKAGLVIGKGGETIKQLQ 41
>pdb|3KHZ|A Chain A, Crystal Structure Of R350a Mutant Of Staphylococcus
Aureus Metallopeptidase (SapepDAPE) IN THE APO-Form
pdb|3KHZ|B Chain B, Crystal Structure Of R350a Mutant Of Staphylococcus
Aureus Metallopeptidase (SapepDAPE) IN THE APO-Form
Length = 492
Score = 26.9 bits (58), Expect = 4.1, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 38 KGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
KG I +R+D KAS P PGP + L E+
Sbjct: 41 KGLLAIESVRDDAKASEDAPVGPGPRKALDYMYEI 75
>pdb|3KHX|A Chain A, Crystal Structure Of Staphylococcus Aureus
Metallopeptidase (SapepDAPE) IN THE APO-Form
pdb|3KHX|B Chain B, Crystal Structure Of Staphylococcus Aureus
Metallopeptidase (SapepDAPE) IN THE APO-Form
pdb|3KI9|A Chain A, Crystal Structure Of Staphylococcus Aureus
Metallopeptidase (SapepDAPE) IN THE MN2+ BOUND FORM
Length = 492
Score = 26.9 bits (58), Expect = 4.1, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 38 KGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
KG I +R+D KAS P PGP + L E+
Sbjct: 41 KGLLAIESVRDDAKASEDAPVGPGPRKALDYMYEI 75
>pdb|2HH2|A Chain A, Solution Structure Of The Fourth Kh Domain Of Ksrp
Length = 107
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
E+ IP+ G VIG+GG N+ + A V +
Sbjct: 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEI 42
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 26.2 bits (56), Expect = 8.4, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 1 MEFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKG 39
M++ Q+SN KR RGG V+ +P + G + G+
Sbjct: 501 MDYVASQVSNAKRLRGGVRFVD---EVPKGLTGKIDGRA 536
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 25.8 bits (55), Expect = 8.7, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 1 MEFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKG 39
M++ Q+SN KR RGG V+ +P + G + G+
Sbjct: 501 MDYVASQVSNAKRLRGGVRFVD---EVPKGLTGKIDGRA 536
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 25.8 bits (55), Expect = 8.8, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 1 MEFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKG 39
M++ Q+SN KR RGG V+ +P + G + G+
Sbjct: 501 MDYVASQVSNAKRLRGGVRFVD---EVPKGLTGKIDGRA 536
>pdb|1J4W|A Chain A, Complex Of The Kh3 And Kh4 Domains Of Fbp With A
Single_stranded 29mer Dna Oligonucleotide From The Fuse
Element Of The C-Myc Oncogene
Length = 174
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP 62
E ++P+ G +IGKGG I + A + + P P
Sbjct: 105 EFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPP 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.142 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,207,752
Number of Sequences: 62578
Number of extensions: 106923
Number of successful extensions: 335
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 299
Number of HSP's gapped (non-prelim): 42
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)