Query psy7546
Match_columns 150
No_of_seqs 110 out of 1362
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 21:09:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7546.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7546hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3krm_A Insulin-like growth fac 99.9 1.1E-25 3.8E-30 161.0 9.1 112 20-150 2-116 (163)
2 2jzx_A Poly(RC)-binding protei 99.9 7.4E-26 2.5E-30 161.4 8.0 119 18-150 2-120 (160)
3 2anr_A Neuro-oncological ventr 99.9 2.2E-25 7.6E-30 161.5 4.5 129 17-150 2-135 (178)
4 2jvz_A KH type-splicing, FAR u 99.9 2.8E-24 9.6E-29 153.6 7.1 117 21-150 2-122 (164)
5 1j4w_A FUSE binding protein; s 99.9 4.3E-24 1.5E-28 154.3 7.3 130 19-150 1-135 (174)
6 2axy_A Poly(RC)-binding protei 99.8 3.4E-19 1.2E-23 111.4 6.0 71 18-88 2-72 (73)
7 1zzk_A Heterogeneous nuclear r 99.7 5.3E-17 1.8E-21 103.6 8.9 73 18-90 4-78 (82)
8 1wvn_A Poly(RC)-binding protei 99.7 2.1E-17 7.3E-22 105.4 6.2 73 17-89 2-76 (82)
9 2p2r_A Poly(RC)-binding protei 99.7 3.1E-17 1.1E-21 103.2 5.5 71 18-88 2-74 (76)
10 2opv_A KHSRP protein; KH domai 99.7 1E-16 3.5E-21 102.9 7.6 76 12-87 5-84 (85)
11 1j5k_A Heterogeneous nuclear r 99.7 5.9E-17 2E-21 104.9 6.1 76 14-89 7-84 (89)
12 2dgr_A Ring finger and KH doma 99.7 4.7E-17 1.6E-21 104.0 5.6 72 15-87 4-75 (83)
13 1x4m_A FAR upstream element bi 99.7 5.9E-17 2E-21 105.9 5.5 73 16-88 10-86 (94)
14 1x4n_A FAR upstream element bi 99.7 1.4E-16 4.7E-21 103.7 7.1 73 18-90 12-86 (92)
15 1dtj_A RNA-binding neurooncolo 99.7 1.2E-16 3.9E-21 100.5 6.2 68 20-87 2-74 (76)
16 2qnd_A FMR1 protein; KH domain 99.7 4.1E-17 1.4E-21 114.5 4.5 97 19-150 2-98 (144)
17 1we8_A Tudor and KH domain con 99.6 8.2E-16 2.8E-20 102.2 8.8 79 13-91 7-89 (104)
18 1ec6_A RNA-binding protein NOV 99.6 2.9E-16 9.8E-21 101.2 6.1 71 20-90 2-77 (87)
19 2hh3_A KH-type splicing regula 99.6 5.4E-16 1.9E-20 103.4 7.0 70 21-90 11-82 (106)
20 1vig_A Vigilin; RNA-binding pr 99.6 7.2E-16 2.5E-20 95.7 7.0 68 18-85 2-69 (71)
21 3n89_A Defective in GERM LINE 99.6 1.5E-15 5.1E-20 120.7 10.1 134 15-150 24-219 (376)
22 2cte_A Vigilin; K homology typ 99.6 1.5E-15 5.2E-20 99.2 8.4 75 16-90 12-86 (94)
23 2hh2_A KH-type splicing regula 99.6 6.6E-16 2.3E-20 103.2 5.4 69 22-90 8-81 (107)
24 2ctm_A Vigilin; K homology typ 99.6 3.8E-15 1.3E-19 97.5 8.9 76 16-91 12-88 (95)
25 2ctl_A Vigilin; K homology typ 99.6 6.8E-15 2.3E-19 96.6 8.9 73 19-91 15-90 (97)
26 2ctk_A Vigilin; K homology typ 99.5 1.6E-14 5.4E-19 96.0 6.4 71 20-90 16-86 (104)
27 2e3u_A PH-DIM2P, hypothetical 99.5 1.8E-14 6.1E-19 107.3 6.4 111 21-150 34-160 (219)
28 2ctj_A Vigilin; K homology typ 99.5 8.5E-14 2.9E-18 91.0 7.1 79 11-89 7-86 (95)
29 2jzx_A Poly(RC)-binding protei 99.5 5.3E-14 1.8E-18 99.8 6.3 71 18-88 86-159 (160)
30 2anr_A Neuro-oncological ventr 99.5 2.6E-14 8.7E-19 103.1 4.5 71 19-89 102-176 (178)
31 3krm_A Insulin-like growth fac 99.4 2.4E-13 8.3E-18 96.6 7.9 73 18-90 82-158 (163)
32 2ctf_A Vigilin; K homology typ 99.4 5.1E-13 1.7E-17 88.3 8.2 71 19-92 25-96 (102)
33 1j4w_A FUSE binding protein; s 99.4 1.6E-13 5.6E-18 98.6 6.1 67 19-85 102-173 (174)
34 2jvz_A KH type-splicing, FAR u 99.4 1.6E-13 5.6E-18 97.5 5.4 70 20-89 90-161 (164)
35 1tua_A Hypothetical protein AP 99.4 8.2E-13 2.8E-17 96.3 5.7 110 22-150 5-129 (191)
36 2qnd_A FMR1 protein; KH domain 99.2 1.3E-11 4.4E-16 86.4 5.2 67 22-88 68-142 (144)
37 2cpq_A FragIle X mental retard 99.1 8E-11 2.7E-15 75.9 4.3 63 17-82 11-75 (91)
38 1k1g_A SF1-BO isoform; splicin 98.9 2.5E-09 8.6E-14 73.5 6.3 70 19-88 5-99 (131)
39 2yqr_A KIAA0907 protein; struc 98.9 7.2E-09 2.5E-13 70.0 7.6 69 20-88 11-99 (119)
40 3n89_A Defective in GERM LINE 98.8 9.1E-09 3.1E-13 81.8 5.7 71 18-88 183-261 (376)
41 2axy_A Poly(RC)-binding protei 98.7 3.2E-09 1.1E-13 65.8 0.6 34 117-150 3-36 (73)
42 2dgr_A Ring finger and KH doma 98.7 4.8E-09 1.6E-13 66.6 1.1 35 116-150 7-41 (83)
43 2bl5_A MGC83862 protein, quaki 98.6 3.6E-08 1.2E-12 68.2 5.4 67 21-87 2-100 (140)
44 1wvn_A Poly(RC)-binding protei 98.6 7.6E-09 2.6E-13 65.4 1.7 35 116-150 3-37 (82)
45 1zzk_A Heterogeneous nuclear r 98.6 1.2E-08 4.2E-13 64.5 2.6 35 116-150 4-38 (82)
46 1dtj_A RNA-binding neurooncolo 98.6 9.5E-09 3.2E-13 63.9 1.9 32 119-150 3-34 (76)
47 1x4n_A FAR upstream element bi 98.6 1.5E-08 5E-13 65.5 2.5 35 116-150 12-46 (92)
48 2p2r_A Poly(RC)-binding protei 98.6 6E-09 2E-13 64.9 0.4 34 117-150 3-36 (76)
49 1we8_A Tudor and KH domain con 98.6 2.5E-08 8.5E-13 65.8 3.2 35 116-150 12-46 (104)
50 2e3u_A PH-DIM2P, hypothetical 98.6 2.2E-08 7.4E-13 74.4 3.1 54 31-89 139-192 (219)
51 1j5k_A Heterogeneous nuclear r 98.6 1E-08 3.5E-13 65.8 0.5 35 116-150 11-45 (89)
52 1x4m_A FAR upstream element bi 98.5 3.2E-08 1.1E-12 64.1 2.7 35 116-150 12-46 (94)
53 2opv_A KHSRP protein; KH domai 98.5 2.4E-08 8.2E-13 63.5 1.9 35 116-150 11-45 (85)
54 1ec6_A RNA-binding protein NOV 98.5 1.8E-08 6.1E-13 64.4 0.1 32 119-150 3-34 (87)
55 1vig_A Vigilin; RNA-binding pr 98.4 6.7E-08 2.3E-12 59.4 2.1 34 117-150 3-36 (71)
56 2hh2_A KH-type splicing regula 98.4 5.2E-08 1.8E-12 64.6 1.5 31 120-150 8-38 (107)
57 2cte_A Vigilin; K homology typ 98.4 1.1E-07 3.8E-12 61.5 1.7 35 116-150 14-48 (94)
58 2ctl_A Vigilin; K homology typ 98.3 1.7E-07 5.7E-12 61.1 1.6 34 117-150 15-48 (97)
59 1tua_A Hypothetical protein AP 98.3 3.4E-07 1.2E-11 66.6 3.1 53 31-88 108-160 (191)
60 3v69_A Protein filia; RNA-bind 98.3 1.7E-06 6E-11 59.1 6.3 69 21-89 56-125 (140)
61 2hh3_A KH-type splicing regula 98.3 1.7E-07 5.8E-12 62.0 1.1 33 118-150 10-42 (106)
62 2ctm_A Vigilin; K homology typ 98.2 2.2E-07 7.5E-12 60.3 1.2 35 116-150 14-48 (95)
63 2ctk_A Vigilin; K homology typ 98.1 3.7E-07 1.3E-11 60.2 0.3 34 117-150 15-48 (104)
64 2cxc_A NUSA; transcription ter 98.0 3.7E-07 1.3E-11 63.5 -1.2 98 21-149 36-133 (144)
65 3u1k_A Polyribonucleotide nucl 98.0 5.3E-06 1.8E-10 70.1 5.2 61 19-83 565-626 (630)
66 2cpq_A FragIle X mental retard 97.9 9.5E-07 3.3E-11 56.7 -0.7 35 116-150 12-46 (91)
67 2ctj_A Vigilin; K homology typ 97.8 2.4E-06 8.3E-11 55.3 0.0 35 116-150 14-49 (95)
68 2ctf_A Vigilin; K homology typ 97.7 1E-05 3.6E-10 53.0 1.1 32 117-148 25-56 (102)
69 4aid_A Polyribonucleotide nucl 97.5 2.8E-05 9.6E-10 66.6 2.0 64 20-87 569-633 (726)
70 2yqr_A KIAA0907 protein; struc 97.1 0.00012 4.1E-09 49.2 0.8 34 117-150 10-50 (119)
71 3u1k_A Polyribonucleotide nucl 97.1 0.00032 1.1E-08 59.3 3.4 34 117-150 565-598 (630)
72 4aid_A Polyribonucleotide nucl 96.5 0.0014 4.9E-08 56.2 3.2 34 117-150 568-601 (726)
73 2asb_A Transcription elongatio 96.4 0.00026 9E-09 53.2 -1.4 88 30-149 126-214 (251)
74 1k1g_A SF1-BO isoform; splicin 96.4 0.00034 1.1E-08 47.8 -0.8 24 127-150 21-44 (131)
75 1k0r_A NUSA; two component arr 96.3 0.00084 2.9E-08 53.1 0.9 88 30-149 249-337 (366)
76 1hh2_P NUSA, N utilization sub 95.7 0.0025 8.6E-08 50.1 1.0 88 30-149 245-333 (344)
77 3cdi_A Polynucleotide phosphor 95.3 0.0027 9.4E-08 54.4 -0.1 60 20-83 559-619 (723)
78 3v69_A Protein filia; RNA-bind 93.8 0.014 4.7E-07 39.8 0.5 32 119-150 56-87 (140)
79 1e3p_A Guanosine pentaphosphat 93.8 0.0029 1E-07 54.5 -3.6 56 23-82 600-656 (757)
80 3cdi_A Polynucleotide phosphor 93.5 0.035 1.2E-06 47.7 2.5 34 117-150 558-591 (723)
81 1e3p_A Guanosine pentaphosphat 93.3 0.018 6.3E-07 49.6 0.6 33 118-150 597-629 (757)
82 2cxc_A NUSA; transcription ter 92.8 0.022 7.4E-07 39.3 0.2 40 18-57 100-139 (144)
83 2asb_A Transcription elongatio 91.4 0.097 3.3E-06 39.3 2.3 39 20-58 183-221 (251)
84 1hh2_P NUSA, N utilization sub 90.2 0.16 5.5E-06 39.8 2.7 39 19-57 301-339 (344)
85 1k0r_A NUSA; two component arr 89.5 0.18 6.1E-06 39.9 2.4 40 19-58 305-344 (366)
86 2pt7_G HP1451, hypothetical pr 89.4 0.14 4.7E-06 35.6 1.5 66 22-90 34-100 (152)
87 1wh9_A 40S ribosomal protein S 88.8 0.14 4.9E-06 32.4 1.2 28 22-49 36-63 (92)
88 2pt7_G HP1451, hypothetical pr 83.3 0.36 1.2E-05 33.4 1.0 29 120-148 34-62 (152)
89 1wh9_A 40S ribosomal protein S 80.0 0.43 1.5E-05 30.2 0.4 29 119-147 35-63 (92)
90 3gku_A Probable RNA-binding pr 78.2 0.89 3E-05 33.5 1.7 68 22-89 93-160 (225)
91 3u5c_D RP13, YS3, 40S ribosoma 73.2 1.2 4E-05 33.1 1.2 29 22-50 45-73 (240)
92 3j20_C 30S ribosomal protein S 72.1 1.4 4.8E-05 32.1 1.4 27 23-49 42-68 (210)
93 2zkq_c 40S ribosomal protein S 72.1 1.6 5.4E-05 32.5 1.7 29 22-50 45-73 (243)
94 2xzm_C KH domain containing pr 71.7 1.6 5.5E-05 32.5 1.6 29 21-49 47-75 (243)
95 3iz6_B 40S ribosomal protein S 70.3 1.2 4E-05 32.9 0.6 28 22-49 45-72 (227)
96 3iev_A GTP-binding protein ERA 68.7 1.9 6.5E-05 32.6 1.5 37 20-56 239-284 (308)
97 3iev_A GTP-binding protein ERA 68.5 0.72 2.5E-05 35.0 -0.9 29 119-147 240-269 (308)
98 3r8n_C 30S ribosomal protein S 66.4 1.2 4.1E-05 32.3 -0.0 34 23-56 63-100 (206)
99 3gku_A Probable RNA-binding pr 65.7 1.2 4.1E-05 32.8 -0.1 29 120-148 93-121 (225)
100 3i1m_C 30S ribosomal protein S 63.2 1.5 5E-05 32.5 -0.1 27 23-49 64-90 (233)
101 2vqe_C 30S ribosomal protein S 60.7 2.4 8.3E-05 31.4 0.7 27 23-49 64-90 (239)
102 3bbn_C Ribosomal protein S3; s 57.9 2.1 7.1E-05 31.3 -0.0 27 23-49 72-98 (218)
103 1wf3_A GTP-binding protein; GT 56.7 1.2 4.2E-05 33.7 -1.5 26 122-147 233-259 (301)
104 3u5c_D RP13, YS3, 40S ribosoma 56.7 3.2 0.00011 30.7 0.8 29 119-147 44-72 (240)
105 3j20_C 30S ribosomal protein S 54.3 3.1 0.00011 30.3 0.3 28 120-147 41-68 (210)
106 2ba0_A Archeal exosome RNA bin 54.2 24 0.00083 25.6 5.2 46 25-74 140-185 (229)
107 2xzm_C KH domain containing pr 52.7 4.3 0.00015 30.2 0.9 29 119-147 47-75 (243)
108 3iz6_B 40S ribosomal protein S 51.0 3.3 0.00011 30.5 0.0 29 119-147 44-72 (227)
109 2z0s_A Probable exosome comple 48.4 67 0.0023 23.2 6.9 60 25-88 152-211 (235)
110 3r8n_C 30S ribosomal protein S 45.8 3.2 0.00011 30.1 -0.7 28 120-147 62-89 (206)
111 3af5_A Putative uncharacterize 45.6 5.5 0.00019 33.5 0.6 87 35-149 51-137 (651)
112 2xr1_A Cleavage and polyadenyl 45.5 5.4 0.00018 33.5 0.5 86 36-149 47-132 (640)
113 1wf3_A GTP-binding protein; GT 44.2 3.4 0.00012 31.2 -0.8 32 25-56 234-274 (301)
114 3i1m_C 30S ribosomal protein S 42.7 3.8 0.00013 30.3 -0.7 28 120-147 63-90 (233)
115 2vqe_C 30S ribosomal protein S 42.2 5.7 0.0002 29.4 0.2 27 121-147 64-90 (239)
116 3lkz_A Non-structural protein 42.0 21 0.00071 27.5 3.2 67 17-91 196-266 (321)
117 2zkq_c 40S ribosomal protein S 41.6 4 0.00014 30.3 -0.7 29 119-147 44-72 (243)
118 3bbn_C Ribosomal protein S3; s 41.5 4.8 0.00016 29.4 -0.3 27 121-147 72-98 (218)
119 2kie_A Inositol polyphosphate 40.0 50 0.0017 21.4 4.3 42 45-87 80-121 (124)
120 2ycb_A Beta-CAsp RNAse, cleava 36.2 5.2 0.00018 33.6 -1.0 87 35-149 42-128 (636)
121 1ega_A Protein (GTP-binding pr 34.2 7.5 0.00026 29.2 -0.3 28 120-147 232-260 (301)
122 1go3_E DNA-directed RNA polyme 28.0 36 0.0012 23.6 2.4 27 21-50 7-34 (187)
123 3lh2_S 4E10_1VI7A_S0_002_N (T8 26.9 16 0.00056 21.4 0.4 37 15-58 36-72 (76)
124 2cp9_A EF-TS, EF-TSMT, elongat 22.2 39 0.0013 19.6 1.4 12 139-150 11-22 (64)
125 2ja9_A Exosome complex exonucl 22.1 1.2E+02 0.004 21.0 4.2 43 25-71 95-138 (175)
126 2jva_A Peptidyl-tRNA hydrolase 21.3 1E+02 0.0035 19.6 3.5 54 36-91 23-100 (108)
127 3p8z_A Mtase, non-structural p 21.0 1.6E+02 0.0054 22.0 4.8 66 19-90 180-247 (267)
128 3dhx_A Methionine import ATP-b 20.9 1E+02 0.0035 19.1 3.4 58 20-83 21-86 (106)
129 2l05_A Serine/threonine-protei 20.8 1.2E+02 0.0043 18.9 3.6 37 9-45 6-42 (95)
130 3cgi_A Propanediol utilization 20.4 1.5E+02 0.0051 19.4 4.2 39 50-90 68-106 (124)
No 1
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.93 E-value=1.1e-25 Score=160.95 Aligned_cols=112 Identities=27% Similarity=0.382 Sum_probs=98.1
Q ss_pred ceEEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecCC--C-CCCceEEEecChHHHHHHHHHHHHHHHHhhhhcCCC
Q psy7546 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC--P-GPERILTIFAELENGLKVIEEVLPALDEIRQKYGKG 96 (150)
Q Consensus 20 ~~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~--~-~~ervv~I~G~~~~v~~A~~~i~~~~~~~~~~~~~~ 96 (150)
+.+++|+||.+.+|.||||+|++|++|+++|||+|++++. + +++|+|+|+|+++++.+|..+|...+.+.....+
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~v~~A~~~I~~~~~e~~~~~~-- 79 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQFKAQGRIYGKLKEENFFGP-- 79 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHHHHHHHHHHHHHHHHTTSSCS--
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhccccccc--
Confidence 4689999999999999999999999999999999999974 2 5899999999999999999999998887521110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceEEEEEEecCceeEEeecCCchHHHHHHhhCC
Q psy7546 97 RGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150 (150)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~tGA 150 (150)
......+.+|.||.+++|+||||+|++|++|++.|||
T Consensus 80 -----------------~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga 116 (163)
T 3krm_A 80 -----------------KEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAA 116 (163)
T ss_dssp -----------------SCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCC
T ss_pred -----------------ccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCC
Confidence 1135567899999999999999999999999999997
No 2
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.92 E-value=7.4e-26 Score=161.43 Aligned_cols=119 Identities=30% Similarity=0.507 Sum_probs=102.7
Q ss_pred CCceEEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecCCCCCCceEEEecChHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy7546 18 PNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGR 97 (150)
Q Consensus 18 ~~~~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~~~~ervv~I~G~~~~v~~A~~~i~~~~~~~~~~~~~~~ 97 (150)
+..++++|+||.+.+|.||||+|++|++|+++|||+|++++..+++|.|+|+|+++++.+|..+|...+.+.......++
T Consensus 2 ~~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~e~~~~~~~~~ 81 (160)
T 2jzx_A 2 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNS 81 (160)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECCTTTEEEEEEEEEHHHHHHHHHHHHHHHHHHHTSCCCSS
T ss_pred CccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCCCCCceEEEEEeCHHHHHHHHHHHHHHHHhhccccCCCC
Confidence 35689999999999999999999999999999999999998777899999999999999999999999887653221100
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEEEEEecCceeEEeecCCchHHHHHHhhCC
Q psy7546 98 GGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150 (150)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~tGA 150 (150)
........+.++.||.+++|+||||+|++|++|+++|||
T Consensus 82 --------------~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga 120 (160)
T 2jzx_A 82 --------------TAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGA 120 (160)
T ss_dssp --------------SCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSS
T ss_pred --------------ccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCC
Confidence 011235689999999999999999999999999999997
No 3
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.91 E-value=2.2e-25 Score=161.53 Aligned_cols=129 Identities=29% Similarity=0.389 Sum_probs=99.1
Q ss_pred CCCceEEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecCC----C-CCCceEEEecChHHHHHHHHHHHHHHHHhhh
Q psy7546 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----P-GPERILTIFAELENGLKVIEEVLPALDEIRQ 91 (150)
Q Consensus 17 ~~~~~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~----~-~~ervv~I~G~~~~v~~A~~~i~~~~~~~~~ 91 (150)
.+++++++|+||.+.+|.||||+|++|++|+++|||+|++++. + +++|+|+|+|+++++.+|..+|...+.+...
T Consensus 2 l~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~~~~~~~ 81 (178)
T 2anr_A 2 LGSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQ 81 (178)
T ss_dssp -CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHHHHHHHHHHHHHHhccCC
Confidence 3678999999999999999999999999999999999999864 2 5889999999999999999999888765432
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCCCCceEEEEEEecCceeEEeecCCchHHHHHHhhCC
Q psy7546 92 KYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150 (150)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~tGA 150 (150)
........ .+..+..........+.+|.||.+++|+||||+|++|++|++.|||
T Consensus 82 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga 135 (178)
T 2anr_A 82 NVAKTEPV-----SILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGA 135 (178)
T ss_dssp C----------------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSC
T ss_pred ccccCCcc-----cccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCC
Confidence 11100000 0000000011234578999999999999999999999999999997
No 4
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.90 E-value=2.8e-24 Score=153.56 Aligned_cols=117 Identities=25% Similarity=0.364 Sum_probs=95.3
Q ss_pred eEEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecCCC----CCCceEEEecChHHHHHHHHHHHHHHHHhhhhcCCC
Q psy7546 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP----GPERILTIFAELENGLKVIEEVLPALDEIRQKYGKG 96 (150)
Q Consensus 21 ~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~~----~~ervv~I~G~~~~v~~A~~~i~~~~~~~~~~~~~~ 96 (150)
++++|+||.+.+|.||||+|++||+|+++|||+|++++.. +++|+|+|+|+++++.+|..+|...+.+....
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~ii~e~~~~---- 77 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRERDQG---- 77 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHHHHHHHHHHHHHHTTCSSSC----
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhccCC----
Confidence 6789999999999999999999999999999999997542 47899999999999999999998887653211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceEEEEEEecCceeEEeecCCchHHHHHHhhCC
Q psy7546 97 RGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150 (150)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~tGA 150 (150)
+......|.. ....+.++.||.+++|+||||+|++|++|+++|||
T Consensus 78 --~~~~~~~~~~-------~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~ 122 (164)
T 2jvz_A 78 --GFGDRNEYGS-------RIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGV 122 (164)
T ss_dssp --CCSSCSSCTT-------SCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCC
T ss_pred --CCCCccccCC-------CCCceEEEEEChhhccccCCCCcHhHHHHHHHHCC
Confidence 0000011111 12356789999999999999999999999999997
No 5
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.90 E-value=4.3e-24 Score=154.31 Aligned_cols=130 Identities=28% Similarity=0.398 Sum_probs=95.9
Q ss_pred CceEEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecCC-C-CCCceEEEecChHHHHHHHHHHHHHHHHhhhhcCCC
Q psy7546 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-P-GPERILTIFAELENGLKVIEEVLPALDEIRQKYGKG 96 (150)
Q Consensus 19 ~~~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~-~-~~ervv~I~G~~~~v~~A~~~i~~~~~~~~~~~~~~ 96 (150)
+..+++|+||.+.+|.||||+|++||+|+++|||+|++++. + +++|+|+|+|+++++.+|+.+|...+.+........
T Consensus 1 g~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~~~~~~~~~~~~ 80 (174)
T 1j4w_A 1 GSHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRAQHAAEIITDLLRSVQAGNPGG 80 (174)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHHHHHHHHHHHHHHHHHHC------
T ss_pred CCeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHhcccCCCCC
Confidence 35789999999999999999999999999999999999853 2 588999999999999999999998887753211000
Q ss_pred CCCCCCCCCCCCCC---CCCCCCCceEEEEEEecCceeEEeecCCchHHHHHHhhCC
Q psy7546 97 RGGEDGGDGYNGGG---VGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150 (150)
Q Consensus 97 ~~~~~~~~~~~~~~---~~~~~~~~~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~tGA 150 (150)
.+ +....+.... ...+.....+.+|.||.+++|+||||+|++|++|+++|||
T Consensus 81 -~~-p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga 135 (174)
T 1j4w_A 81 -PG-PGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGA 135 (174)
T ss_dssp -------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCC
T ss_pred -CC-CCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCC
Confidence 00 0000000000 0001123468899999999999999999999999999997
No 6
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.77 E-value=3.4e-19 Score=111.44 Aligned_cols=71 Identities=27% Similarity=0.511 Sum_probs=66.7
Q ss_pred CCceEEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecCCCCCCceEEEecChHHHHHHHHHHHHHHHH
Q psy7546 18 PNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDE 88 (150)
Q Consensus 18 ~~~~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~~~~ervv~I~G~~~~v~~A~~~i~~~~~~ 88 (150)
+..++++|+||.+.+|.||||+|++||+|+++|||+|++++..+++|+|+|+|+++++.+|..+|...+.+
T Consensus 2 ~~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 2 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSSCCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred CceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecCCCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 35689999999999999999999999999999999999998877899999999999999999999998875
No 7
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.71 E-value=5.3e-17 Score=103.57 Aligned_cols=73 Identities=25% Similarity=0.385 Sum_probs=66.7
Q ss_pred CCceEEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecCCC--CCCceEEEecChHHHHHHHHHHHHHHHHhh
Q psy7546 18 PNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGLKVIEEVLPALDEIR 90 (150)
Q Consensus 18 ~~~~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~~--~~ervv~I~G~~~~v~~A~~~i~~~~~~~~ 90 (150)
.+.++++|.||.+.+|.||||+|++|++|+++|||+|++++.. +++|.|+|+|+++++.+|..+|...+.+..
T Consensus 4 g~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~~ 78 (82)
T 1zzk_A 4 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYS 78 (82)
T ss_dssp CCCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHHhcc
Confidence 4678999999999999999999999999999999999999752 478999999999999999999999888753
No 8
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.70 E-value=2.1e-17 Score=105.42 Aligned_cols=73 Identities=21% Similarity=0.242 Sum_probs=65.5
Q ss_pred CCCceEEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecCC-C-CCCceEEEecChHHHHHHHHHHHHHHHHh
Q psy7546 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-P-GPERILTIFAELENGLKVIEEVLPALDEI 89 (150)
Q Consensus 17 ~~~~~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~-~-~~ervv~I~G~~~~v~~A~~~i~~~~~~~ 89 (150)
....++++|.||.+.+|.||||+|++|++|+++|||+|++++. + +++|.|+|+|+++++.+|..+|...+.+.
T Consensus 2 ~g~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 2 LGSQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp CTTCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CCCcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 4567899999999999999999999999999999999999974 2 47999999999999999999999887664
No 9
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.68 E-value=3.1e-17 Score=103.16 Aligned_cols=71 Identities=20% Similarity=0.275 Sum_probs=64.3
Q ss_pred CCceEEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecCC-C-CCCceEEEecChHHHHHHHHHHHHHHHH
Q psy7546 18 PNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-P-GPERILTIFAELENGLKVIEEVLPALDE 88 (150)
Q Consensus 18 ~~~~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~-~-~~ervv~I~G~~~~v~~A~~~i~~~~~~ 88 (150)
+..++++|.||.+.+|.||||+|++|++|+++|||+|++++. + +++|.|+|+|+++++.+|..+|...+.+
T Consensus 2 ~~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 2 AQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSS 74 (76)
T ss_dssp -CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred CCceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeCHHHHHHHHHHHHHHHHc
Confidence 357899999999999999999999999999999999999974 2 4799999999999999999999888754
No 10
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.68 E-value=1e-16 Score=102.91 Aligned_cols=76 Identities=26% Similarity=0.375 Sum_probs=67.8
Q ss_pred CCCCCCCCceEEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecCCC----CCCceEEEecChHHHHHHHHHHHHHHH
Q psy7546 12 KRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP----GPERILTIFAELENGLKVIEEVLPALD 87 (150)
Q Consensus 12 ~~~~~~~~~~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~~----~~ervv~I~G~~~~v~~A~~~i~~~~~ 87 (150)
.+|..+++..+.+|.||.+.+|.||||+|++||+|+++|||+|.+++.. +.+|.|+|+|+++++.+|..+|...+.
T Consensus 5 ~~~~~g~~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 5 DNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILR 84 (85)
T ss_dssp SSCCCSCSSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEECHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHhc
Confidence 3467778889999999999999999999999999999999999998742 478999999999999999988877653
No 11
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.68 E-value=5.9e-17 Score=104.89 Aligned_cols=76 Identities=25% Similarity=0.356 Sum_probs=67.5
Q ss_pred CCCCCCceEEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecCCC--CCCceEEEecChHHHHHHHHHHHHHHHHh
Q psy7546 14 FRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGLKVIEEVLPALDEI 89 (150)
Q Consensus 14 ~~~~~~~~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~~--~~ervv~I~G~~~~v~~A~~~i~~~~~~~ 89 (150)
+......++++|.||.+.+|.||||+|++||+|+++|||+|++++.. +++|.|+|+|+++++.+|..+|...+.+.
T Consensus 7 ~~~~~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 7 GDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp ---CCCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 34456789999999999999999999999999999999999998752 47899999999999999999999988875
No 12
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=4.7e-17 Score=103.97 Aligned_cols=72 Identities=21% Similarity=0.361 Sum_probs=65.3
Q ss_pred CCCCCceEEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecCCCCCCceEEEecChHHHHHHHHHHHHHHH
Q psy7546 15 RGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALD 87 (150)
Q Consensus 15 ~~~~~~~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~~~~ervv~I~G~~~~v~~A~~~i~~~~~ 87 (150)
++.++..+.+|.||.+.+|+||||+|++||+||++|||+|+++... ++++++|+|+++++++|..+|...+.
T Consensus 4 ~~~~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~-~~~~v~ItG~~e~v~~A~~~I~~~i~ 75 (83)
T 2dgr_A 4 GSSGGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRD-KEPVFAVTGMPENVDRAREEIEAHIT 75 (83)
T ss_dssp CCSCCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSS-SCCEEEEEECTTTHHHHHHHHHHHHH
T ss_pred CCCCCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCC-CCCeEEEEcCHHHHHHHHHHHHHHHh
Confidence 4567889999999999999999999999999999999999998643 47999999999999999999988654
No 13
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.67 E-value=5.9e-17 Score=105.93 Aligned_cols=73 Identities=27% Similarity=0.432 Sum_probs=67.2
Q ss_pred CCCCceEEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecCCC----CCCceEEEecChHHHHHHHHHHHHHHHH
Q psy7546 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP----GPERILTIFAELENGLKVIEEVLPALDE 88 (150)
Q Consensus 16 ~~~~~~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~~----~~ervv~I~G~~~~v~~A~~~i~~~~~~ 88 (150)
.+++.++++|+||.+.+|.||||+|++||+|+++|||+|++++.. +++|+|+|+|+++++.+|+.+|...+.+
T Consensus 10 ~~p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 86 (94)
T 1x4m_A 10 DGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRD 86 (94)
T ss_dssp CCCCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEECTTTHHHHHHHHHHHHCC
T ss_pred CCCCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 467899999999999999999999999999999999999998753 4799999999999999999999988865
No 14
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.67 E-value=1.4e-16 Score=103.75 Aligned_cols=73 Identities=18% Similarity=0.284 Sum_probs=66.9
Q ss_pred CCceEEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecCCC--CCCceEEEecChHHHHHHHHHHHHHHHHhh
Q psy7546 18 PNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGLKVIEEVLPALDEIR 90 (150)
Q Consensus 18 ~~~~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~~--~~ervv~I~G~~~~v~~A~~~i~~~~~~~~ 90 (150)
...++++|.||.+.+|.||||+|++|++|+++|||+|+|++.. .++|.|+|+|+++++.+|..+|...+.+..
T Consensus 12 ~~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~~ 86 (92)
T 1x4n_A 12 RSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKGR 86 (92)
T ss_dssp CCCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEECHHHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHhcc
Confidence 5679999999999999999999999999999999999999763 478999999999999999999999888743
No 15
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.66 E-value=1.2e-16 Score=100.47 Aligned_cols=68 Identities=16% Similarity=0.293 Sum_probs=61.6
Q ss_pred ceEEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecCC----C-CCCceEEEecChHHHHHHHHHHHHHHH
Q psy7546 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----P-GPERILTIFAELENGLKVIEEVLPALD 87 (150)
Q Consensus 20 ~~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~----~-~~ervv~I~G~~~~v~~A~~~i~~~~~ 87 (150)
..+++|.||.+.+|.||||+|++|++|+++|||+|++++. + +++|.|+|+|+++++.+|..+|...+.
T Consensus 2 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 74 (76)
T 1dtj_A 2 KELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVT 74 (76)
T ss_dssp CEEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHHHCC
T ss_pred ceEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHHHHh
Confidence 4688999999999999999999999999999999999974 2 478999999999999999998887654
No 16
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.66 E-value=4.1e-17 Score=114.48 Aligned_cols=97 Identities=19% Similarity=0.196 Sum_probs=76.0
Q ss_pred CceEEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecCCCCCCceEEEecChHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy7546 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98 (150)
Q Consensus 19 ~~~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~~~~ervv~I~G~~~~v~~A~~~i~~~~~~~~~~~~~~~~ 98 (150)
..++.+|+||.+.+|++||++|++|++|++++|+++.... ..+++.+...++++.+.+|..++ .
T Consensus 2 ~~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~ii~~~-~~~~~~i~~~~~p~~v~~~~~~l----~----------- 65 (144)
T 2qnd_A 2 SRFHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLD-EDTCTFHIYGEDQDAVKKARSFL----E----------- 65 (144)
T ss_dssp --CEEEEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEE-TTTTEEEEEESSHHHHHHHHHHH----C-----------
T ss_pred CceEEEEEECCcceeeEECCChhHHHHHHHHHCCeEeccC-CCchheeeccCCHHHHHHHHHhh----h-----------
Confidence 3578999999999999999999999999999994433222 23566666667788887764321 1
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEEEEEecCceeEEeecCCchHHHHHHhhCC
Q psy7546 99 GEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150 (150)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~tGA 150 (150)
.....+.||.+++|++|||+|.+|+.+++.|||
T Consensus 66 -------------------~~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~ 98 (144)
T 2qnd_A 66 -------------------FAEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGV 98 (144)
T ss_dssp -------------------EEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTC
T ss_pred -------------------cceEEEEECHHHcCeeECCCCHHHHHHHHHHCC
Confidence 012779999999999999999999999999995
No 17
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.64 E-value=8.2e-16 Score=102.22 Aligned_cols=79 Identities=20% Similarity=0.251 Sum_probs=68.7
Q ss_pred CCCCCCCceEEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecCCC----CCCceEEEecChHHHHHHHHHHHHHHHH
Q psy7546 13 RFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP----GPERILTIFAELENGLKVIEEVLPALDE 88 (150)
Q Consensus 13 ~~~~~~~~~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~~----~~ervv~I~G~~~~v~~A~~~i~~~~~~ 88 (150)
+.-......+++|.||.+.+|.||||+|++||+|+++|||+|++++.. .++|.|+|.|+.+++.+|+.+|...+.+
T Consensus 7 ~~~s~~ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e 86 (104)
T 1we8_A 7 GILTENTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSE 86 (104)
T ss_dssp CCCSSSCEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 334445668899999999999999999999999999999999999753 2589999999999999999999998876
Q ss_pred hhh
Q psy7546 89 IRQ 91 (150)
Q Consensus 89 ~~~ 91 (150)
.+.
T Consensus 87 ~~~ 89 (104)
T 1we8_A 87 DEE 89 (104)
T ss_dssp HHH
T ss_pred ChH
Confidence 553
No 18
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.64 E-value=2.9e-16 Score=101.20 Aligned_cols=71 Identities=15% Similarity=0.262 Sum_probs=64.6
Q ss_pred ceEEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecCC----C-CCCceEEEecChHHHHHHHHHHHHHHHHhh
Q psy7546 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----P-GPERILTIFAELENGLKVIEEVLPALDEIR 90 (150)
Q Consensus 20 ~~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~----~-~~ervv~I~G~~~~v~~A~~~i~~~~~~~~ 90 (150)
..+++|.||.+.+|.||||+|++|++|+++|||+|++++. + +++|.|+|+|+++++.+|..+|...+.+..
T Consensus 2 k~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 77 (87)
T 1ec6_A 2 KELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQ 77 (87)
T ss_dssp CSEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhccc
Confidence 3678999999999999999999999999999999999974 2 378999999999999999999999887754
No 19
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=5.4e-16 Score=103.39 Aligned_cols=70 Identities=23% Similarity=0.399 Sum_probs=63.4
Q ss_pred eEEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecCCC--CCCceEEEecChHHHHHHHHHHHHHHHHhh
Q psy7546 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGLKVIEEVLPALDEIR 90 (150)
Q Consensus 21 ~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~~--~~ervv~I~G~~~~v~~A~~~i~~~~~~~~ 90 (150)
-+++|+||.+.+|.||||+|++||+|+++|||+|+|++.. +++|.|+|+|+++++.+|..+|...+.+..
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~~e~v~~A~~~I~~ii~~~~ 82 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSLR 82 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESSHHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhccc
Confidence 4789999999999999999999999999999999998643 478999999999999999999998887754
No 20
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.63 E-value=7.2e-16 Score=95.71 Aligned_cols=68 Identities=22% Similarity=0.357 Sum_probs=61.9
Q ss_pred CCceEEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecCCCCCCceEEEecChHHHHHHHHHHHHH
Q psy7546 18 PNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLPA 85 (150)
Q Consensus 18 ~~~~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~~~~ervv~I~G~~~~v~~A~~~i~~~ 85 (150)
+...+..|.||.+.+|.|||++|++|++|+++|||+|+|++...++|.|+|+|+.+++.+|..+|...
T Consensus 2 ~~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~~~~~V~I~G~~~~v~~A~~~I~~i 69 (71)
T 1vig_A 2 NRMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGDPQGVQQAKRELLEL 69 (71)
T ss_dssp CCCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCCSSSEEEEEEESSHHHHHHHHHHHHT
T ss_pred CceEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCCCcccEEEEEcCHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999998766789999999999999999888654
No 21
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.62 E-value=1.5e-15 Score=120.68 Aligned_cols=134 Identities=11% Similarity=0.146 Sum_probs=97.4
Q ss_pred CCCCCceEEEEEeeCCccceEecCCc--hHHHHHHHHhCCeEEecCCC-------CCCceEEEecChHHHHHHHHHHHHH
Q psy7546 15 RGGPNDVELRLLIPSRVAGSVIGKGG--SNIARLRNDFKASVTVPDCP-------GPERILTIFAELENGLKVIEEVLPA 85 (150)
Q Consensus 15 ~~~~~~~~~~l~vp~~~vg~IIGk~G--~~Ik~l~~~tg~~I~i~~~~-------~~ervv~I~G~~~~v~~A~~~i~~~ 85 (150)
....+.++.++.||...++.||||+| ++|++|+++|||+|+|++.+ .....|+|+|.+++|++|...|...
T Consensus 24 e~~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~l 103 (376)
T 3n89_A 24 EINPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRN 103 (376)
T ss_dssp CCCTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHHS
T ss_pred EecCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHhc
Confidence 44578999999999999999999999 99999999999999999754 2457899999999999999988763
Q ss_pred ------------------HHHhhhhcCCCCCCCC----CCCCCCC--------CCCC------------------C---C
Q psy7546 86 ------------------LDEIRQKYGKGRGGED----GGDGYNG--------GGVG------------------G---L 114 (150)
Q Consensus 86 ------------------~~~~~~~~~~~~~~~~----~~~~~~~--------~~~~------------------~---~ 114 (150)
+...... ...++.. ..+..++ .|.. . .
T Consensus 104 ~Pl~i~~elp~~~i~~~~l~~~I~q--q~~y~V~I~Fp~~~~~~~~~sd~V~IrG~~~nv~~akeA~~~Ll~~l~~~e~~ 181 (376)
T 3n89_A 104 CHFTVFMALSKMKMPLHELQAHVRQ--NPIQNVEMSFVDAPEKNGIVTTYLRITAREKNQHELIEAAKRLNEILFRESPA 181 (376)
T ss_dssp CEEEEEEECTTCSSCHHHHHHHHHH--CCCTTCEEEEEEEC-----CEEEEEEEEEGGGHHHHHHHHHHHHHHHCC--CC
T ss_pred CCceEEEEccccccCcchhhhhhcc--ceeCceEEEeCCcccccCCCCCEEEEEcChhhHHHHHHHHHHHHHHHHhhhcc
Confidence 1111111 0111110 0011000 0000 1 1
Q ss_pred CCCceEEEEEEecCceeEEeecCC--chHHHHHHhhCC
Q psy7546 115 GKDDYDIRLIVHQSQAGCIIGKGG--TKIKELRDTFDA 150 (150)
Q Consensus 115 ~~~~~~~~l~vp~~~~g~iIGk~G--~~Ik~i~~~tGA 150 (150)
....++..+.|+..++..|||++| ..|++|+++|||
T Consensus 182 ~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv 219 (376)
T 3n89_A 182 PENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTT 219 (376)
T ss_dssp CSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTC
T ss_pred cccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCC
Confidence 124688999999999999999999 566999999997
No 22
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.62 E-value=1.5e-15 Score=99.17 Aligned_cols=75 Identities=23% Similarity=0.234 Sum_probs=67.7
Q ss_pred CCCCceEEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecCCCCCCceEEEecChHHHHHHHHHHHHHHHHhh
Q psy7546 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEIR 90 (150)
Q Consensus 16 ~~~~~~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~~~~ervv~I~G~~~~v~~A~~~i~~~~~~~~ 90 (150)
...+.++.+|.||.+.+|.|||++|++||+|+++|||+|+|++...+++.|+|+|+++++.+|..+|...+.+..
T Consensus 12 ~l~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~~~~~V~I~G~~e~v~~A~~~I~~i~~~~~ 86 (94)
T 2cte_A 12 RLQTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGTKEGIEKARHEVLLISAEQD 86 (94)
T ss_dssp CCCSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTTSSCCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCCCCCCeEEEEECHHHHHHHHHHHHHHhhccc
Confidence 345679999999999999999999999999999999999999765567899999999999999999988887754
No 23
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=6.6e-16 Score=103.18 Aligned_cols=69 Identities=19% Similarity=0.254 Sum_probs=63.0
Q ss_pred EEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecCCC-----CCCceEEEecChHHHHHHHHHHHHHHHHhh
Q psy7546 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP-----GPERILTIFAELENGLKVIEEVLPALDEIR 90 (150)
Q Consensus 22 ~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~~-----~~ervv~I~G~~~~v~~A~~~i~~~~~~~~ 90 (150)
+++|+||.+.+|.||||+|++||+|+++|||+|+|++.. .++|.|+|+|+++++.+|+.+|...+.+..
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~~ 81 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGPL 81 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSCSCC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHhccc
Confidence 789999999999999999999999999999999999753 267999999999999999999998887643
No 24
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.61 E-value=3.8e-15 Score=97.45 Aligned_cols=76 Identities=21% Similarity=0.288 Sum_probs=68.6
Q ss_pred CCCCceEEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecCCC-CCCceEEEecChHHHHHHHHHHHHHHHHhhh
Q psy7546 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP-GPERILTIFAELENGLKVIEEVLPALDEIRQ 91 (150)
Q Consensus 16 ~~~~~~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~~-~~ervv~I~G~~~~v~~A~~~i~~~~~~~~~ 91 (150)
...+.++..|.||.+.+|.|||++|++|++|+++|||+|+|++.. .++|.|+|+|.++++.+|+.+|...+.+...
T Consensus 12 ~l~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~~~~~V~I~G~~e~v~~A~~~I~~i~~e~~~ 88 (95)
T 2ctm_A 12 ELEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGLPENVEEAIDHILNLEEEYLA 88 (95)
T ss_dssp CTTTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTCSCTTEEEEESCHHHHHHHHHHHHHHHHHHHT
T ss_pred hhcccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCCCCCcEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 446779999999999999999999999999999999999998764 3678999999999999999999998887664
No 25
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.59 E-value=6.8e-15 Score=96.59 Aligned_cols=73 Identities=21% Similarity=0.376 Sum_probs=65.3
Q ss_pred CceEEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecCCC---CCCceEEEecChHHHHHHHHHHHHHHHHhhh
Q psy7546 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---GPERILTIFAELENGLKVIEEVLPALDEIRQ 91 (150)
Q Consensus 19 ~~~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~~---~~ervv~I~G~~~~v~~A~~~i~~~~~~~~~ 91 (150)
..++..|.||.+.+|.|||++|++|++|+++|||+|+|++.. ..+|.|+|+|+.+++.+|..+|...+.+...
T Consensus 15 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~~e~v~~A~~~I~~iv~e~e~ 90 (97)
T 2ctl_A 15 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEKNTEAARDAILRIVGELEQ 90 (97)
T ss_dssp TTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESCHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHHHHh
Confidence 457999999999999999999999999999999999999754 2679999999999999999999888776543
No 26
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.53 E-value=1.6e-14 Score=95.97 Aligned_cols=71 Identities=23% Similarity=0.360 Sum_probs=64.1
Q ss_pred ceEEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecCCCCCCceEEEecChHHHHHHHHHHHHHHHHhh
Q psy7546 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEIR 90 (150)
Q Consensus 20 ~~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~~~~ervv~I~G~~~~v~~A~~~i~~~~~~~~ 90 (150)
..+..|.||.+.+|.|||++|++|++|+++|||+|+|++.....+.|+|+|+.+++.+|+.+|...+.+..
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G~~e~v~~A~~~I~~i~~e~e 86 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGLAANLDRAKAGLLERVKELQ 86 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCCCCcceEEEEcCHHHHHHHHHHHHHHHhhHH
Confidence 37889999999999999999999999999999999999876566799999999999999998888776643
No 27
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.51 E-value=1.8e-14 Score=107.31 Aligned_cols=111 Identities=19% Similarity=0.160 Sum_probs=79.3
Q ss_pred eEEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecCCCCCCceEEEecC-----hHHHHHHHHHHHHHHHHhhhhcCC
Q psy7546 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAE-----LENGLKVIEEVLPALDEIRQKYGK 95 (150)
Q Consensus 21 ~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~~~~ervv~I~G~-----~~~v~~A~~~i~~~~~~~~~~~~~ 95 (150)
-..++.||.+.+|.|||++|++|+.|+++||++|.++.. ++.|.|.++ ++++.+|..+|.............
T Consensus 34 ~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~---~g~V~I~~~~~t~d~~~i~kA~~~I~~i~rg~~~e~g~ 110 (219)
T 2e3u_A 34 QEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSE---TGEVWITSTKETEDPLAVWKARDIVLAIGRGFSPERAF 110 (219)
T ss_dssp CEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTT---TCEEEEEECTTCCSHHHHHHHHHHHHHHHTTCCHHHHG
T ss_pred EEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcC---CCEEEEecCCCCCCHHHHHHHHHHHHHHhccCCccccc
Confidence 456899999999999999999999999999999999843 456788775 599999998888765210000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCceEEEEEEe-----------cCceeEEeecCCchHHHHHHhhCC
Q psy7546 96 GRGGEDGGDGYNGGGVGGLGKDDYDIRLIVH-----------QSQAGCIIGKGGTKIKELRDTFDA 150 (150)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vp-----------~~~~g~iIGk~G~~Ik~i~~~tGA 150 (150)
. ...+......+.++ ...+|+||||+|++|+.|++.||+
T Consensus 111 ~----------------ll~dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~ 160 (219)
T 2e3u_A 111 R----------------LLNEGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGA 160 (219)
T ss_dssp G----------------GGSTTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCC
T ss_pred e----------------eccCCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCc
Confidence 0 00011111122222 126899999999999999999996
No 28
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.48 E-value=8.5e-14 Score=90.96 Aligned_cols=79 Identities=18% Similarity=0.181 Sum_probs=70.8
Q ss_pred CCCCCCCCCceEEEEEeeCCccceEecCCchHHHHHHHHh-CCeEEecCCCCCCceEEEecChHHHHHHHHHHHHHHHHh
Q psy7546 11 FKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDF-KASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEI 89 (150)
Q Consensus 11 ~~~~~~~~~~~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~t-g~~I~i~~~~~~ervv~I~G~~~~v~~A~~~i~~~~~~~ 89 (150)
........+.++..|.||.+.++.|||++|.+|++|+++| ||+|.|++..+..+.|+|+|+.+.+.+|+.+|...+.+.
T Consensus 7 ~~i~~e~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~~~~V~I~G~~~~v~~A~~~I~~iv~e~ 86 (95)
T 2ctj_A 7 GSIQKDLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPSSDVEKAKKQLLHLAEEK 86 (95)
T ss_dssp CCCCCCCCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTTCCEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCCcceEEEEcCHHHHHHHHHHHHHHHhhh
Confidence 3445667889999999999999999999999999999999 999999987667789999999999999999998887763
No 29
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=5.3e-14 Score=99.77 Aligned_cols=71 Identities=32% Similarity=0.513 Sum_probs=64.7
Q ss_pred CCceEEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecCC--C-CCCceEEEecChHHHHHHHHHHHHHHHH
Q psy7546 18 PNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC--P-GPERILTIFAELENGLKVIEEVLPALDE 88 (150)
Q Consensus 18 ~~~~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~--~-~~ervv~I~G~~~~v~~A~~~i~~~~~~ 88 (150)
....+++|+||.+.+|.||||+|.+|++|+++|||+|++++. + +.++.|+|+|+++++.+|+.+|...+.+
T Consensus 86 ~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 86 RPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE 159 (160)
T ss_dssp CCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTTCCEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Confidence 346899999999999999999999999999999999999864 2 4789999999999999999999888765
No 30
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.47 E-value=2.6e-14 Score=103.15 Aligned_cols=71 Identities=25% Similarity=0.471 Sum_probs=65.2
Q ss_pred CceEEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecCCC----CCCceEEEecChHHHHHHHHHHHHHHHHh
Q psy7546 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP----GPERILTIFAELENGLKVIEEVLPALDEI 89 (150)
Q Consensus 19 ~~~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~~----~~ervv~I~G~~~~v~~A~~~i~~~~~~~ 89 (150)
...+++|+||.+.+|.||||+|++||+|+++|||+|++++.+ +.+|.|+|+|+++++.+|+.+|...+.+.
T Consensus 102 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e~ 176 (178)
T 2anr_A 102 RANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQNRVVTVSGEPEQNRKAVELIIQKIQED 176 (178)
T ss_dssp GGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC----CCEEEEEEESSHHHHHHHHHHHHHHHHSC
T ss_pred CceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhC
Confidence 457899999999999999999999999999999999998753 47899999999999999999999998864
No 31
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.44 E-value=2.4e-13 Score=96.63 Aligned_cols=73 Identities=26% Similarity=0.415 Sum_probs=64.5
Q ss_pred CCceEEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecCCC---C-CCceEEEecChHHHHHHHHHHHHHHHHhh
Q psy7546 18 PNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP---G-PERILTIFAELENGLKVIEEVLPALDEIR 90 (150)
Q Consensus 18 ~~~~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~~---~-~ervv~I~G~~~~v~~A~~~i~~~~~~~~ 90 (150)
....+.+|.||.+.+|.||||+|++|++|+++|||+|++++.. + .++.|+|+|+++++.+|..+|...+.+..
T Consensus 82 ~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~~ 158 (163)
T 3krm_A 82 EVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGHFYASQMAQRKIRDILAQVK 158 (163)
T ss_dssp CCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEEEEEECHHHHHHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999998652 2 34589999999999999999999988754
No 32
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.43 E-value=5.1e-13 Score=88.35 Aligned_cols=71 Identities=18% Similarity=0.249 Sum_probs=63.9
Q ss_pred CceEEEEEeeCCccceEecCCchHHHHHHHH-hCCeEEecCCCCCCceEEEecChHHHHHHHHHHHHHHHHhhhh
Q psy7546 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRND-FKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEIRQK 92 (150)
Q Consensus 19 ~~~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~-tg~~I~i~~~~~~ervv~I~G~~~~v~~A~~~i~~~~~~~~~~ 92 (150)
+.++.+|.||...++.|||++|++|++|+++ ++++|+|++ .++.|+|.|+++.|.+|..+|...+.+....
T Consensus 25 ~~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~---~~~~ItI~G~~~~V~~a~~~I~~~v~el~~~ 96 (102)
T 2ctf_A 25 SFTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE---GEDKITLEGPTEDVSVAQEQIEGMVKDLINR 96 (102)
T ss_dssp CCEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS---SSCEEEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC---CCCEEEEECCHHHHHHHHHHHHHHHHHHHhh
Confidence 3478999999999999999999999999997 589999998 4689999999999999999998888776544
No 33
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.43 E-value=1.6e-13 Score=98.59 Aligned_cols=67 Identities=19% Similarity=0.296 Sum_probs=59.8
Q ss_pred CceEEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecCCC-----CCCceEEEecChHHHHHHHHHHHHH
Q psy7546 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP-----GPERILTIFAELENGLKVIEEVLPA 85 (150)
Q Consensus 19 ~~~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~~-----~~ervv~I~G~~~~v~~A~~~i~~~ 85 (150)
+..+++|.||.+.+|.||||+|++||+|+++|||+|++++.. +.+|.|+|.|+++++.+|..+|...
T Consensus 102 ~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~ 173 (174)
T 1j4w_A 102 GLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEK 173 (174)
T ss_dssp --CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEEEEECCHHHHHHHHHHHHHH
T ss_pred CcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCCCCCceEEEEECCHHHHHHHHHHHHHh
Confidence 357899999999999999999999999999999999998752 4679999999999999999888765
No 34
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.42 E-value=1.6e-13 Score=97.45 Aligned_cols=70 Identities=21% Similarity=0.377 Sum_probs=63.1
Q ss_pred ceEEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecCCC--CCCceEEEecChHHHHHHHHHHHHHHHHh
Q psy7546 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGLKVIEEVLPALDEI 89 (150)
Q Consensus 20 ~~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~~--~~ervv~I~G~~~~v~~A~~~i~~~~~~~ 89 (150)
..+++|.||.+.+|.||||+|++|++|+++|||+|++++.. +.+|.|+|+|+++++.+|..+|...+.+.
T Consensus 90 ~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 161 (164)
T 2jvz_A 90 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSL 161 (164)
T ss_dssp SSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEEcCHHHHHHHHHHHHHHHhhh
Confidence 35689999999999999999999999999999999998653 36899999999999999999998888764
No 35
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.35 E-value=8.2e-13 Score=96.29 Aligned_cols=110 Identities=19% Similarity=0.209 Sum_probs=80.8
Q ss_pred EEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecCCCCCCceEEEe-----cChHHHHHHHHHHHHHHHHhhhhcCCC
Q psy7546 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIF-----AELENGLKVIEEVLPALDEIRQKYGKG 96 (150)
Q Consensus 22 ~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~~~~ervv~I~-----G~~~~v~~A~~~i~~~~~~~~~~~~~~ 96 (150)
.++++||.+.+|.|||++|++++.|++.+|++|+++. .++.|+|. |++..+.+|...|..............
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~---~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~~e~A~~ 81 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT---ENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPPEKAFR 81 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET---TTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCCHHHHGG
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc---CCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHHHhhh
Confidence 3689999999999999999999999999999999975 36778887 899999999988865544211000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceEEEEEEe----------cCceeEEeecCCchHHHHHHhhCC
Q psy7546 97 RGGEDGGDGYNGGGVGGLGKDDYDIRLIVH----------QSQAGCIIGKGGTKIKELRDTFDA 150 (150)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~vp----------~~~~g~iIGk~G~~Ik~i~~~tGA 150 (150)
...++.....+.++ ...+|.||||+|.+++.|++.||+
T Consensus 82 ----------------Ll~Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~ 129 (191)
T 1tua_A 82 ----------------LLEEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDT 129 (191)
T ss_dssp ----------------GGSTTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTC
T ss_pred ----------------cccCcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCc
Confidence 00012122223333 235899999999999999999986
No 36
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.21 E-value=1.3e-11 Score=86.35 Aligned_cols=67 Identities=18% Similarity=0.179 Sum_probs=57.9
Q ss_pred EEEEEeeCCccceEecCCchHHHHHHHHhCC-eEEecCCC-----CCCc--eEEEecChHHHHHHHHHHHHHHHH
Q psy7546 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKA-SVTVPDCP-----GPER--ILTIFAELENGLKVIEEVLPALDE 88 (150)
Q Consensus 22 ~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~-~I~i~~~~-----~~er--vv~I~G~~~~v~~A~~~i~~~~~~ 88 (150)
..++.||.+++|++|||+|.+||.+++.||+ +|+|+..+ .+++ .|+|.|+++++..|..+|...+.+
T Consensus 68 e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~~~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 68 EDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGTKDSIANATVLLDYHLNY 142 (144)
T ss_dssp EEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEEHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 3889999999999999999999999999997 99998532 2344 488999999999999999888764
No 37
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.09 E-value=8e-11 Score=75.87 Aligned_cols=63 Identities=16% Similarity=0.201 Sum_probs=54.3
Q ss_pred CCCceEEEEEeeCCccceEecCCchHHHHHHHHhCCe-EEecCCCCCCceEEEec-ChHHHHHHHHHH
Q psy7546 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKAS-VTVPDCPGPERILTIFA-ELENGLKVIEEV 82 (150)
Q Consensus 17 ~~~~~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~-I~i~~~~~~ervv~I~G-~~~~v~~A~~~i 82 (150)
-...+...|.||.+.+|.|||++|.+|++|+++||++ |.+.+. +..|.|.| +.+.+.+|..+|
T Consensus 11 ~~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~ed---dG~V~I~g~~~ea~~~A~~~I 75 (91)
T 2cpq_A 11 LAAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDED---TGTFRIYGESADAVKKARGFL 75 (91)
T ss_dssp SSCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEETT---TTEEEEEESSHHHHHHHHHHH
T ss_pred ccCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEcC---CCEEEEEECCHHHHHHHHHHH
Confidence 3456889999999999999999999999999999998 999862 47899999 777787777554
No 38
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.90 E-value=2.5e-09 Score=73.48 Aligned_cols=70 Identities=20% Similarity=0.343 Sum_probs=56.3
Q ss_pred CceEEEEEeeCC------ccceEecCCchHHHHHHHHhCCeEEecCCC------------------CCCceEEEec-ChH
Q psy7546 19 NDVELRLLIPSR------VAGSVIGKGGSNIARLRNDFKASVTVPDCP------------------GPERILTIFA-ELE 73 (150)
Q Consensus 19 ~~~~~~l~vp~~------~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~~------------------~~ervv~I~G-~~~ 73 (150)
..++.++.||.+ .+|.|||++|.+||+|+++|||+|.+.... ..+--|.|++ +.+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 457899999988 789999999999999999999999997521 1234566766 577
Q ss_pred HHHHHHHHHHHHHHH
Q psy7546 74 NGLKVIEEVLPALDE 88 (150)
Q Consensus 74 ~v~~A~~~i~~~~~~ 88 (150)
.+.+|+.+|...+..
T Consensus 85 ~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 788888888887765
No 39
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.88 E-value=7.2e-09 Score=69.99 Aligned_cols=69 Identities=17% Similarity=0.083 Sum_probs=53.6
Q ss_pred ceEEEEEeeCC-------ccceEecCCchHHHHHHHHhCCeEEecCCCC------------C-CceEEEecChHHHHHHH
Q psy7546 20 DVELRLLIPSR-------VAGSVIGKGGSNIARLRNDFKASVTVPDCPG------------P-ERILTIFAELENGLKVI 79 (150)
Q Consensus 20 ~~~~~l~vp~~-------~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~~~------------~-ervv~I~G~~~~v~~A~ 79 (150)
.++.++.||-+ .+|.|||++|.+||+|+++|||+|.|....| . .++.....+.+.+.+|+
T Consensus 11 ~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~ 90 (119)
T 2yqr_A 11 YVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAK 90 (119)
T ss_dssp CEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHH
T ss_pred EEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHH
Confidence 47788988865 6899999999999999999999999973211 2 23444456788899999
Q ss_pred HHHHHHHHH
Q psy7546 80 EEVLPALDE 88 (150)
Q Consensus 80 ~~i~~~~~~ 88 (150)
.+|..++..
T Consensus 91 ~~Ie~Ll~~ 99 (119)
T 2yqr_A 91 KLCENLLQT 99 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 887777655
No 40
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=98.75 E-value=9.1e-09 Score=81.78 Aligned_cols=71 Identities=13% Similarity=0.223 Sum_probs=59.6
Q ss_pred CCceEEEEEeeCCccceEecCCc--hHHHHHHHHhCCeEEecCCCC------CCceEEEecChHHHHHHHHHHHHHHHH
Q psy7546 18 PNDVELRLLIPSRVAGSVIGKGG--SNIARLRNDFKASVTVPDCPG------PERILTIFAELENGLKVIEEVLPALDE 88 (150)
Q Consensus 18 ~~~~~~~l~vp~~~vg~IIGk~G--~~Ik~l~~~tg~~I~i~~~~~------~ervv~I~G~~~~v~~A~~~i~~~~~~ 88 (150)
...++..|.|+..++..|||++| ..|++|+++||++|.|++.+. ....|+|+|..++|.+|...|...+.=
T Consensus 183 ~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItItGs~e~V~~Ark~I~~lLPv 261 (376)
T 3n89_A 183 ENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKVVGNIDNVLKARRYIMDLLPI 261 (376)
T ss_dssp SSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEEEEESCHHHHHHHHHHHHHTSEE
T ss_pred ccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEEEeCHHHHHHHHHHHHhhCCE
Confidence 45689999999999999999999 567999999999999996532 346899999999999999998887643
No 41
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=98.67 E-value=3.2e-09 Score=65.76 Aligned_cols=34 Identities=38% Similarity=0.671 Sum_probs=32.4
Q ss_pred CceEEEEEEecCceeEEeecCCchHHHHHHhhCC
Q psy7546 117 DDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150 (150)
Q Consensus 117 ~~~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~tGA 150 (150)
...+.+|+||++.+|+||||+|++|++|+++|||
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga 36 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGA 36 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCC
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCC
Confidence 5678999999999999999999999999999997
No 42
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.66 E-value=4.8e-09 Score=66.60 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=33.1
Q ss_pred CCceEEEEEEecCceeEEeecCCchHHHHHHhhCC
Q psy7546 116 KDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150 (150)
Q Consensus 116 ~~~~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~tGA 150 (150)
+...+.++.||.+++|+||||+|++||+|+++|||
T Consensus 7 ~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga 41 (83)
T 2dgr_A 7 GGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHT 41 (83)
T ss_dssp CCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTC
T ss_pred CCceEEEEEeChHHeeeeECCCchHHHHHHHHhCC
Confidence 56789999999999999999999999999999997
No 43
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.65 E-value=3.6e-08 Score=68.24 Aligned_cols=67 Identities=19% Similarity=0.291 Sum_probs=49.8
Q ss_pred eEEEEEeeCCc------cceEecCCchHHHHHHHHhCCeEEecCCCC--------------------CCceEEEecC-hH
Q psy7546 21 VELRLLIPSRV------AGSVIGKGGSNIARLRNDFKASVTVPDCPG--------------------PERILTIFAE-LE 73 (150)
Q Consensus 21 ~~~~l~vp~~~------vg~IIGk~G~~Ik~l~~~tg~~I~i~~~~~--------------------~ervv~I~G~-~~ 73 (150)
++.++.||-+. +|.|||++|.++|+|+++|||+|.|....| .+--|.|++. ++
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 56788899655 999999999999999999999999985321 1114667763 33
Q ss_pred -----HHHHHHHHHHHHHH
Q psy7546 74 -----NGLKVIEEVLPALD 87 (150)
Q Consensus 74 -----~v~~A~~~i~~~~~ 87 (150)
.+.+|+.+|...+.
T Consensus 82 ~~~~~~l~~A~~~I~~lL~ 100 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLV 100 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSS
T ss_pred hhHHHHHHHHHHHHHHHCC
Confidence 56677766666554
No 44
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=98.64 E-value=7.6e-09 Score=65.40 Aligned_cols=35 Identities=31% Similarity=0.567 Sum_probs=32.8
Q ss_pred CCceEEEEEEecCceeEEeecCCchHHHHHHhhCC
Q psy7546 116 KDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150 (150)
Q Consensus 116 ~~~~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~tGA 150 (150)
....+.+|.||.+++|+||||+|++|++|+++|||
T Consensus 3 g~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga 37 (82)
T 1wvn_A 3 GSQTTHELTIPNNLIGCIIGRQGANINEIRQMSGA 37 (82)
T ss_dssp TTCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCC
T ss_pred CCcEEEEEEEchHhccceeCCCchhHHHHHHHhCC
Confidence 36688999999999999999999999999999997
No 45
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=98.63 E-value=1.2e-08 Score=64.46 Aligned_cols=35 Identities=34% Similarity=0.547 Sum_probs=32.9
Q ss_pred CCceEEEEEEecCceeEEeecCCchHHHHHHhhCC
Q psy7546 116 KDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150 (150)
Q Consensus 116 ~~~~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~tGA 150 (150)
.+..+.++.||.+++|+||||+|++|++|+++|||
T Consensus 4 g~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga 38 (82)
T 1zzk_A 4 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGA 38 (82)
T ss_dssp CCCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCC
T ss_pred CCeEEEEEEEChHhcCeeECCCchHHHHHHHHHCC
Confidence 35789999999999999999999999999999997
No 46
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=98.63 E-value=9.5e-09 Score=63.92 Aligned_cols=32 Identities=28% Similarity=0.493 Sum_probs=30.5
Q ss_pred eEEEEEEecCceeEEeecCCchHHHHHHhhCC
Q psy7546 119 YDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150 (150)
Q Consensus 119 ~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~tGA 150 (150)
.+.++.||.+++|+||||+|++|++|++.|||
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga 34 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGA 34 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCC
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCC
Confidence 57889999999999999999999999999997
No 47
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=98.61 E-value=1.5e-08 Score=65.49 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=32.8
Q ss_pred CCceEEEEEEecCceeEEeecCCchHHHHHHhhCC
Q psy7546 116 KDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150 (150)
Q Consensus 116 ~~~~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~tGA 150 (150)
....+.+|.||.+++|+||||+|++|++|+++|||
T Consensus 12 ~~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga 46 (92)
T 1x4n_A 12 RSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGC 46 (92)
T ss_dssp CCCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCC
T ss_pred CCCEEEEEEEChHHcceeECCCchHHHHHHHHhCC
Confidence 35688999999999999999999999999999997
No 48
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=98.60 E-value=6e-09 Score=64.93 Aligned_cols=34 Identities=35% Similarity=0.614 Sum_probs=32.3
Q ss_pred CceEEEEEEecCceeEEeecCCchHHHHHHhhCC
Q psy7546 117 DDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150 (150)
Q Consensus 117 ~~~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~tGA 150 (150)
...+.+|.||.+++|+||||+|++|++|++.|||
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga 36 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGA 36 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCC
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCC
Confidence 5678999999999999999999999999999997
No 49
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.59 E-value=2.5e-08 Score=65.83 Aligned_cols=35 Identities=31% Similarity=0.418 Sum_probs=32.9
Q ss_pred CCceEEEEEEecCceeEEeecCCchHHHHHHhhCC
Q psy7546 116 KDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150 (150)
Q Consensus 116 ~~~~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~tGA 150 (150)
..+.+.+|.||.+++|+||||+|++|++|+++|||
T Consensus 12 ~ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga 46 (104)
T 1we8_A 12 NTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGA 46 (104)
T ss_dssp SCEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCC
T ss_pred CCCEEEEEEEChhheeeeECCCCHHHHHHHHHHCC
Confidence 46788999999999999999999999999999997
No 50
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=98.59 E-value=2.2e-08 Score=74.43 Aligned_cols=54 Identities=19% Similarity=0.144 Sum_probs=49.5
Q ss_pred ccceEecCCchHHHHHHHHhCCeEEecCCCCCCceEEEecChHHHHHHHHHHHHHHHHh
Q psy7546 31 VAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEI 89 (150)
Q Consensus 31 ~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~~~~ervv~I~G~~~~v~~A~~~i~~~~~~~ 89 (150)
.+|.||||+|.+|+.|++.|||+|.+++ +.|.|.|+.+++..|..+|+.++...
T Consensus 139 ~~GriIGk~G~tik~ie~~Tg~~I~v~~-----~~v~i~G~~~~i~~A~~~i~~li~g~ 192 (219)
T 2e3u_A 139 VRGRIIGRKGRTRQIIEEMSGASVSVYG-----KTVAIIGNPIQIEIAKTAIEKLARGS 192 (219)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEEET-----TEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred hhheeECCCchHHHHHHHHhCceEEECC-----eEEEEEeCHHHHHHHHHHHHHHHcCC
Confidence 6899999999999999999999999986 46999999999999999999998653
No 51
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=98.55 E-value=1e-08 Score=65.80 Aligned_cols=35 Identities=34% Similarity=0.547 Sum_probs=33.3
Q ss_pred CCceEEEEEEecCceeEEeecCCchHHHHHHhhCC
Q psy7546 116 KDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150 (150)
Q Consensus 116 ~~~~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~tGA 150 (150)
....+.++.||.+++|+||||+|++|++|+++|||
T Consensus 11 ~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga 45 (89)
T 1j5k_A 11 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGA 45 (89)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCC
T ss_pred CCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCC
Confidence 57789999999999999999999999999999997
No 52
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.54 E-value=3.2e-08 Score=64.12 Aligned_cols=35 Identities=31% Similarity=0.556 Sum_probs=33.3
Q ss_pred CCceEEEEEEecCceeEEeecCCchHHHHHHhhCC
Q psy7546 116 KDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150 (150)
Q Consensus 116 ~~~~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~tGA 150 (150)
+...+.+|.||.+++|+||||+|++|++|+++|||
T Consensus 12 p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga 46 (94)
T 1x4m_A 12 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGV 46 (94)
T ss_dssp CCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTS
T ss_pred CCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCC
Confidence 57789999999999999999999999999999997
No 53
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=98.54 E-value=2.4e-08 Score=63.51 Aligned_cols=35 Identities=29% Similarity=0.562 Sum_probs=32.5
Q ss_pred CCceEEEEEEecCceeEEeecCCchHHHHHHhhCC
Q psy7546 116 KDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150 (150)
Q Consensus 116 ~~~~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~tGA 150 (150)
....+.+|.||.+++|+||||+|++|++|+++|||
T Consensus 11 ~~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga 45 (85)
T 2opv_A 11 QNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGV 45 (85)
T ss_dssp CSSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTC
T ss_pred CCCEEEEEEeChhheeeeECCCCHHHHHHHHHHCC
Confidence 35678899999999999999999999999999997
No 54
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=98.47 E-value=1.8e-08 Score=64.36 Aligned_cols=32 Identities=28% Similarity=0.493 Sum_probs=30.5
Q ss_pred eEEEEEEecCceeEEeecCCchHHHHHHhhCC
Q psy7546 119 YDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150 (150)
Q Consensus 119 ~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~tGA 150 (150)
.+.++.||.+++|+||||+|++|++|++.|||
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga 34 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGA 34 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCC
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCC
Confidence 57889999999999999999999999999997
No 55
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=98.44 E-value=6.7e-08 Score=59.41 Aligned_cols=34 Identities=18% Similarity=0.391 Sum_probs=31.9
Q ss_pred CceEEEEEEecCceeEEeecCCchHHHHHHhhCC
Q psy7546 117 DDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150 (150)
Q Consensus 117 ~~~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~tGA 150 (150)
...+.++.||.+++|.|||++|++|++|+++|||
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~ 36 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYKV 36 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCC
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHHHHHHHCC
Confidence 5678899999999999999999999999999996
No 56
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.43 E-value=5.2e-08 Score=64.60 Aligned_cols=31 Identities=23% Similarity=0.592 Sum_probs=30.1
Q ss_pred EEEEEEecCceeEEeecCCchHHHHHHhhCC
Q psy7546 120 DIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150 (150)
Q Consensus 120 ~~~l~vp~~~~g~iIGk~G~~Ik~i~~~tGA 150 (150)
+.+|.||.+++|+||||+|++||+|+++|||
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa 38 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGA 38 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSS
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCC
Confidence 7899999999999999999999999999997
No 57
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.36 E-value=1.1e-07 Score=61.54 Aligned_cols=35 Identities=17% Similarity=0.340 Sum_probs=32.6
Q ss_pred CCceEEEEEEecCceeEEeecCCchHHHHHHhhCC
Q psy7546 116 KDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150 (150)
Q Consensus 116 ~~~~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~tGA 150 (150)
...++.++.||.+++|.|||++|++|++|+++|||
T Consensus 14 ~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~ 48 (94)
T 2cte_A 14 QTQASATVAIPKEHHRFVIGKNGEKLQDLELKTAT 48 (94)
T ss_dssp CSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTC
T ss_pred CCceEEEEEEChHHeeeeECCCChhHHHHHHHHCC
Confidence 35688999999999999999999999999999996
No 58
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.31 E-value=1.7e-07 Score=61.11 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=32.0
Q ss_pred CceEEEEEEecCceeEEeecCCchHHHHHHhhCC
Q psy7546 117 DDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150 (150)
Q Consensus 117 ~~~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~tGA 150 (150)
...+..+.||.+++|.|||++|++|++|+++|||
T Consensus 15 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~ 48 (97)
T 2ctl_A 15 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDV 48 (97)
T ss_dssp TTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTC
T ss_pred cceeEEEEECHHHhhhcCCCCchhHHHHHHHHCC
Confidence 4578999999999999999999999999999996
No 59
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=98.29 E-value=3.4e-07 Score=66.55 Aligned_cols=53 Identities=15% Similarity=0.322 Sum_probs=48.3
Q ss_pred ccceEecCCchHHHHHHHHhCCeEEecCCCCCCceEEEecChHHHHHHHHHHHHHHHH
Q psy7546 31 VAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDE 88 (150)
Q Consensus 31 ~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~~~~ervv~I~G~~~~v~~A~~~i~~~~~~ 88 (150)
..|.||||+|.+++.|++.|||+|.+++. .|.|.|+++++..|...|..++..
T Consensus 108 ~~GrIIGk~G~tik~iE~~Tg~~I~v~~~-----~v~i~G~~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 108 IKGRIIGEGGRARRTIEEMTDTYINVGEY-----EVAIIGDYERAMAAKQAIEMLAEG 160 (191)
T ss_dssp HHHHHHCGGGHHHHHHHHHHTCEEEECSS-----EEEEEEEHHHHHHHHHHHHHHHTT
T ss_pred HhhheeCCCccHHHHHHHHHCceEEEcCC-----EEEEEeChHHHHHHHHHHHHHHcC
Confidence 48999999999999999999999999874 699999999999999888888864
No 60
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=98.28 E-value=1.7e-06 Score=59.06 Aligned_cols=69 Identities=17% Similarity=0.131 Sum_probs=60.5
Q ss_pred eEEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecCCC-CCCceEEEecChHHHHHHHHHHHHHHHHh
Q psy7546 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP-GPERILTIFAELENGLKVIEEVLPALDEI 89 (150)
Q Consensus 21 ~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~~-~~ervv~I~G~~~~v~~A~~~i~~~~~~~ 89 (150)
-++.|.+.+..++.|+|++|+.|+.|+..|++.|++.... +++--|+|.|++..-.+|..+|....+..
T Consensus 56 dPlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s~g~tEVtIfG~~~~Q~rak~MI~sLA~~h 125 (140)
T 3v69_A 56 DPKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGPERRAEIWIFGPPPFRRDVDRMLTDLAHYC 125 (140)
T ss_dssp SCEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCTTSCEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCCCCcEEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999754 46777999999999999998888777654
No 61
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.27 E-value=1.7e-07 Score=62.03 Aligned_cols=33 Identities=24% Similarity=0.449 Sum_probs=30.1
Q ss_pred ceEEEEEEecCceeEEeecCCchHHHHHHhhCC
Q psy7546 118 DYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150 (150)
Q Consensus 118 ~~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~tGA 150 (150)
..+.+|.||.+++|+||||+|++||+|+++|||
T Consensus 10 ~~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGa 42 (106)
T 2hh3_A 10 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGV 42 (106)
T ss_dssp --CEEEEEETTTHHHHHTTTTHHHHHHHHHHTC
T ss_pred CeEEEEEECHHHcCccCCCCcHHHHHHHHHHCc
Confidence 457899999999999999999999999999997
No 62
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.25 E-value=2.2e-07 Score=60.30 Aligned_cols=35 Identities=20% Similarity=0.331 Sum_probs=32.9
Q ss_pred CCceEEEEEEecCceeEEeecCCchHHHHHHhhCC
Q psy7546 116 KDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150 (150)
Q Consensus 116 ~~~~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~tGA 150 (150)
...++.++.||.+++|.|||++|++|++|+++|||
T Consensus 14 ~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~ 48 (95)
T 2ctm_A 14 EQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKV 48 (95)
T ss_dssp TTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTC
T ss_pred cccEEEEEEECHHHccccCCCCcchHHHHHHHHCC
Confidence 46789999999999999999999999999999986
No 63
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.13 E-value=3.7e-07 Score=60.20 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=32.0
Q ss_pred CceEEEEEEecCceeEEeecCCchHHHHHHhhCC
Q psy7546 117 DDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150 (150)
Q Consensus 117 ~~~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~tGA 150 (150)
.+.+..+.||.+++|.|||++|++|++|+++||+
T Consensus 15 ap~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~ 48 (104)
T 2ctk_A 15 VPVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEV 48 (104)
T ss_dssp SCEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCC
T ss_pred CCEEEEEEEChHHccceeCCCchHHHHHHHHHCC
Confidence 4588999999999999999999999999999996
No 64
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=98.03 E-value=3.7e-07 Score=63.47 Aligned_cols=98 Identities=26% Similarity=0.324 Sum_probs=68.3
Q ss_pred eEEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecCCCCCCceEEEecChHHHHHHHHHHHHHHHHhhhhcCCCCCCC
Q psy7546 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGE 100 (150)
Q Consensus 21 ~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~~~~ervv~I~G~~~~v~~A~~~i~~~~~~~~~~~~~~~~~~ 100 (150)
-.+.++|+...+|+.||++|.+|+.+++++|-+|.+-+... ++.. .|.+.+. |.....-.
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s~---------d~~~------fI~naLs-----PA~V~~V~ 95 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYSS---------DLER------IVKNLFP-----GVKIESIN 95 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECCS---------SHHH------HHHHHST-----TSCEEEEE
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcCC---------CHHH------HHHHhcC-----CceEEEEE
Confidence 45778999999999999999999999999999998876431 1111 1222211 11100000
Q ss_pred CCCCCCCCCCCCCCCCCceEEEEEEecCceeEEeecCCchHHHHHHhhC
Q psy7546 101 DGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFD 149 (150)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~tG 149 (150)
....+......+.||.+..+..|||+|.+++-..+.||
T Consensus 96 -----------i~~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg 133 (144)
T 2cxc_A 96 -----------VRERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLS 133 (144)
T ss_dssp -----------EEEETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHH
T ss_pred -----------EeecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhC
Confidence 00002456788899999999999999999999998886
No 65
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=98.01 E-value=5.3e-06 Score=70.09 Aligned_cols=61 Identities=16% Similarity=0.279 Sum_probs=51.1
Q ss_pred CceEEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecCCCCCCceEEEecC-hHHHHHHHHHHH
Q psy7546 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAE-LENGLKVIEEVL 83 (150)
Q Consensus 19 ~~~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~~~~ervv~I~G~-~~~v~~A~~~i~ 83 (150)
-.-...|-||.+.+|.|||+||.+||.|+++|||+|.+.+. -.|.|.++ .+...+|+.+|.
T Consensus 565 ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d~----G~V~I~~~~~~~~~~A~~~I~ 626 (630)
T 3u1k_A 565 GPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDE----ETFSVFAPTPSAMHEARDFIT 626 (630)
T ss_dssp CCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS----SEEEEEESSHHHHHHHHHHTT
T ss_pred CCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcCC----cEEEEEeCCHHHHHHHHHHHH
Confidence 34577899999999999999999999999999999999863 57888775 466777776654
No 66
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.92 E-value=9.5e-07 Score=56.73 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=32.7
Q ss_pred CCceEEEEEEecCceeEEeecCCchHHHHHHhhCC
Q psy7546 116 KDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150 (150)
Q Consensus 116 ~~~~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~tGA 150 (150)
.......+.||.+++|.+||++|++|++|+++|||
T Consensus 12 ~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv 46 (91)
T 2cpq_A 12 AAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGV 46 (91)
T ss_dssp SCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTE
T ss_pred cCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCC
Confidence 46688999999999999999999999999999996
No 67
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.83 E-value=2.4e-06 Score=55.32 Aligned_cols=35 Identities=11% Similarity=0.275 Sum_probs=32.5
Q ss_pred CCceEEEEEEecCceeEEeecCCchHHHHHHhh-CC
Q psy7546 116 KDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTF-DA 150 (150)
Q Consensus 116 ~~~~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~t-GA 150 (150)
+...+..|.||.++++.|||++|++|++|+++| |+
T Consensus 14 ~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv 49 (95)
T 2ctj_A 14 ANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGV 49 (95)
T ss_dssp CSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSC
T ss_pred hhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCC
Confidence 567899999999999999999999999999999 65
No 68
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.66 E-value=1e-05 Score=52.96 Aligned_cols=32 Identities=16% Similarity=0.155 Sum_probs=29.2
Q ss_pred CceEEEEEEecCceeEEeecCCchHHHHHHhh
Q psy7546 117 DDYDIRLIVHQSQAGCIIGKGGTKIKELRDTF 148 (150)
Q Consensus 117 ~~~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~t 148 (150)
...+.+|.||+++++.|||++|++|++|++.+
T Consensus 25 ~~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~ 56 (102)
T 2ctf_A 25 SFTVSSVAAPSWLHRFIIGKKGQNLAKITQQM 56 (102)
T ss_dssp CCEEEEEECCSTTHHHHHTTTTCHHHHHHHHC
T ss_pred CeEEEEEEeCHHHHhhhcCCCCccHHHHHHHc
Confidence 34789999999999999999999999999974
No 69
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.51 E-value=2.8e-05 Score=66.57 Aligned_cols=64 Identities=22% Similarity=0.222 Sum_probs=9.3
Q ss_pred ceEEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecCCCCCCceEEEec-ChHHHHHHHHHHHHHHH
Q psy7546 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA-ELENGLKVIEEVLPALD 87 (150)
Q Consensus 20 ~~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~~~~ervv~I~G-~~~~v~~A~~~i~~~~~ 87 (150)
.-...|.||.++++.|||+||.+||.|+++||++|.+.+. -.|.|.+ +.+...+|+..|.....
T Consensus 569 p~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~dd----G~v~I~~~~~~~~~~A~~~i~~i~~ 633 (726)
T 4aid_A 569 PKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDINDD----GVVKVSASDGAKIKAAIDWIKSITD 633 (726)
T ss_dssp CC-----------------------------------------------CCSCHHHHHHHHHC------
T ss_pred CeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEECC----ceEEEEeCCHHHHHHHHHHHHHHhh
Confidence 3466788999999999999999999999999999999863 3456655 46667777766655543
No 70
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.08 E-value=0.00012 Score=49.20 Aligned_cols=34 Identities=15% Similarity=0.122 Sum_probs=29.2
Q ss_pred CceEEEEEEecC-------ceeEEeecCCchHHHHHHhhCC
Q psy7546 117 DDYDIRLIVHQS-------QAGCIIGKGGTKIKELRDTFDA 150 (150)
Q Consensus 117 ~~~~~~l~vp~~-------~~g~iIGk~G~~Ik~i~~~tGA 150 (150)
...+.+|.||.. ++|.|||++|.+||+|+++|||
T Consensus 10 ~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~ 50 (119)
T 2yqr_A 10 HYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGA 50 (119)
T ss_dssp SCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCC
T ss_pred eEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCC
Confidence 456777877765 6899999999999999999997
No 71
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.06 E-value=0.00032 Score=59.32 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=31.8
Q ss_pred CceEEEEEEecCceeEEeecCCchHHHHHHhhCC
Q psy7546 117 DDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150 (150)
Q Consensus 117 ~~~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~tGA 150 (150)
.+....+.||.+.+|.|||+||++||.|+++||+
T Consensus 565 ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~ 598 (630)
T 3u1k_A 565 GPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGV 598 (630)
T ss_dssp CCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCC
T ss_pred CCeEEEEEeChhHhheeECCCChhHHHHHHHHCC
Confidence 5668889999999999999999999999999996
No 72
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=96.49 E-value=0.0014 Score=56.15 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=1.4
Q ss_pred CceEEEEEEecCceeEEeecCCchHHHHHHhhCC
Q psy7546 117 DDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150 (150)
Q Consensus 117 ~~~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~tGA 150 (150)
.+....+.||.+.++.|||+||.+||.|+++|||
T Consensus 568 ap~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~ 601 (726)
T 4aid_A 568 APKIETINIPTDKIREVIGSGGKVIREIVATTGA 601 (726)
T ss_dssp CCC-------------------------------
T ss_pred CCeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCC
Confidence 4456789999999999999999999999999996
No 73
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=96.44 E-value=0.00026 Score=53.22 Aligned_cols=88 Identities=18% Similarity=0.169 Sum_probs=58.7
Q ss_pred CccceEecCCchHHHHH-HHHhCCeEEecCCCCCCceEEEecChHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCC
Q psy7546 30 RVAGSVIGKGGSNIARL-RNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNG 108 (150)
Q Consensus 30 ~~vg~IIGk~G~~Ik~l-~~~tg~~I~i~~~~~~ervv~I~G~~~~v~~A~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (150)
+-+|+.||++|.+|+.| ++-.|-+|-+-.... +.. ..|.+.+. |.....-.
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~------------dp~---~fi~nals-----PA~V~~V~-------- 177 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDD------------DPA---RFVANALS-----PAKVVSVS-------- 177 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCS------------SHH---HHHHHHTT-----TSCCSEEE--------
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEecC------------CHH---HHHHhccC-----CcceEEEE--------
Confidence 55999999999999999 666788888865421 111 12222222 11110000
Q ss_pred CCCCCCCCCceEEEEEEecCceeEEeecCCchHHHHHHhhC
Q psy7546 109 GGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFD 149 (150)
Q Consensus 109 ~~~~~~~~~~~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~tG 149 (150)
..........+.||.++.+..|||+|.+++...+.||
T Consensus 178 ----i~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg 214 (251)
T 2asb_A 178 ----VIDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTG 214 (251)
T ss_dssp ----EEETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHS
T ss_pred ----EEcCCCcEEEEEEChHHhhhhhcCCcCcHHHHHHHHC
Confidence 0001235788999999999999999999999999887
No 74
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=96.43 E-value=0.00034 Score=47.75 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=22.1
Q ss_pred cCceeEEeecCCchHHHHHHhhCC
Q psy7546 127 QSQAGCIIGKGGTKIKELRDTFDA 150 (150)
Q Consensus 127 ~~~~g~iIGk~G~~Ik~i~~~tGA 150 (150)
.+++|.|||++|.+||+|+++|||
T Consensus 21 ~n~iG~IIGP~G~tiK~Iq~eTG~ 44 (131)
T 1k1g_A 21 INFVGLLIGPRGNTLKNIEKECNA 44 (131)
T ss_dssp HHHHHHHHCSSSHHHHHHHHHSCC
T ss_pred cceeeeEECCCcHHHHHHHHHHCC
Confidence 357899999999999999999997
No 75
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=96.34 E-value=0.00084 Score=53.10 Aligned_cols=88 Identities=18% Similarity=0.217 Sum_probs=60.2
Q ss_pred CccceEecCCchHHHHHHHHh-CCeEEecCCCCCCceEEEecChHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCC
Q psy7546 30 RVAGSVIGKGGSNIARLRNDF-KASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNG 108 (150)
Q Consensus 30 ~~vg~IIGk~G~~Ik~l~~~t-g~~I~i~~~~~~ervv~I~G~~~~v~~A~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (150)
+-+|+.||++|.+|+.|.++. |-+|.+-... ++.. ..|.+.+. |.....-.
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s------------~dp~---~fi~nals-----PA~V~~V~-------- 300 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYD------------DDPA---RFVANALS-----PAKVVSVS-------- 300 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECC------------SSHH---HHHHHHTT-----TSCCSEEE--------
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEcC------------CCHH---HHHHHhcC-----CcceeEEE--------
Confidence 568999999999999999999 8888886542 1111 12222221 11110000
Q ss_pred CCCCCCCCCceEEEEEEecCceeEEeecCCchHHHHHHhhC
Q psy7546 109 GGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFD 149 (150)
Q Consensus 109 ~~~~~~~~~~~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~tG 149 (150)
..........+.||....+..|||+|.+++...+.||
T Consensus 301 ----~~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg 337 (366)
T 1k0r_A 301 ----VIDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTG 337 (366)
T ss_dssp ----EEETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHC
T ss_pred ----EEcCCCcEEEEEEChHHhhhccCCCcHHHHHHHHHHC
Confidence 0002345788999999999999999999999999987
No 76
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=95.74 E-value=0.0025 Score=50.08 Aligned_cols=88 Identities=25% Similarity=0.319 Sum_probs=59.5
Q ss_pred CccceEecCCchHHHHHHHHh-CCeEEecCCCCCCceEEEecChHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCC
Q psy7546 30 RVAGSVIGKGGSNIARLRNDF-KASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNG 108 (150)
Q Consensus 30 ~~vg~IIGk~G~~Ik~l~~~t-g~~I~i~~~~~~ervv~I~G~~~~v~~A~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (150)
+-+|+.||.+|.+|+.+.++. |-+|-+-... ++.. ..|.+.+. |.....-.
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~~s------------~d~~---~fi~nal~-----Pa~v~~v~-------- 296 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWS------------DDPK---QLIANALA-----PATVIEVE-------- 296 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEECC------------SSHH---HHHHHHTC-----SSCCSEEE--------
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEecC------------CCHH---HHHHHhcC-----ccEEEEEE--------
Confidence 458999999999999999998 6888776442 1111 12222221 11100000
Q ss_pred CCCCCCCCCceEEEEEEecCceeEEeecCCchHHHHHHhhC
Q psy7546 109 GGVGGLGKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFD 149 (150)
Q Consensus 109 ~~~~~~~~~~~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~tG 149 (150)
..........+.||..+.+..|||+|.+++...+.||
T Consensus 297 ----~~d~~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg 333 (344)
T 1hh2_P 297 ----ILDKENKAARVLVPPTQLSLAIGKGGQNARLAAKLTG 333 (344)
T ss_dssp ----EEETTTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHS
T ss_pred ----EEcCCCCEEEEEEChHHcchhhcCCCccHHHHHHHHC
Confidence 0002345788999999999999999999999999887
No 77
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=95.33 E-value=0.0027 Score=54.44 Aligned_cols=60 Identities=25% Similarity=0.285 Sum_probs=0.0
Q ss_pred ceEEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecCCCCCCceEEEec-ChHHHHHHHHHHH
Q psy7546 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA-ELENGLKVIEEVL 83 (150)
Q Consensus 20 ~~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~~~~ervv~I~G-~~~~v~~A~~~i~ 83 (150)
.-...+.+|.++++.+||++|.+|+.|.++||+.|.+.+. ..+.|.+ ..+...+|...|.
T Consensus 559 p~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~d----g~v~I~~~~~~~~~~a~~~i~ 619 (723)
T 3cdi_A 559 PRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDD----GTVKIAATDGEKAKHAIRRIE 619 (723)
T ss_dssp -----------------------------------------------------------------
T ss_pred ceEEEEEECHHHhcccccccceeeeeeehhhCceEEecCC----ccEEEecCCHHHHHHHHHHHH
Confidence 3456678899999999999999999999999999988763 3455544 3444555544443
No 78
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=93.84 E-value=0.014 Score=39.83 Aligned_cols=32 Identities=25% Similarity=0.342 Sum_probs=28.7
Q ss_pred eEEEEEEecCceeEEeecCCchHHHHHHhhCC
Q psy7546 119 YDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150 (150)
Q Consensus 119 ~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~tGA 150 (150)
...-+.+.++.++.|+|++|+.|++|+..|.|
T Consensus 56 dPlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqT 87 (140)
T 3v69_A 56 DPKRLYVEPRLLEIMFGKDGEHIPHLESMLHT 87 (140)
T ss_dssp SCEEEEECGGGHHHHHCGGGTTHHHHHHHHTS
T ss_pred CCeEEEEehhhhhcccCCCcCccchHHhhcce
Confidence 45667899999999999999999999999875
No 79
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=93.77 E-value=0.0029 Score=54.53 Aligned_cols=56 Identities=23% Similarity=0.296 Sum_probs=17.7
Q ss_pred EEEEeeCCccceEecCCchHHHHHHHHhCCeEEecCCCCCCceEEEecC-hHHHHHHHHHH
Q psy7546 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAE-LENGLKVIEEV 82 (150)
Q Consensus 23 ~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~~~~ervv~I~G~-~~~v~~A~~~i 82 (150)
..|.||.+.+|.+||++|.+||.|++++|+.|.+.+ +..|.|+.. .....+|...|
T Consensus 600 ~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~----dG~v~Is~~~~~~~~~a~~~i 656 (757)
T 1e3p_A 600 ITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED----DGTIYIGAADGPAAEAARATI 656 (757)
T ss_dssp CCC------------------CTTCCCCCSCC------------CCCBSSHHHHCC-----
T ss_pred EEEEEChHHeehcccccceeeehhhHhhCCEEEecC----CceEEEecCCHHHHHHHHHHH
Confidence 457799999999999999999999999999998885 345566553 34444444333
No 80
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=93.48 E-value=0.035 Score=47.70 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=0.0
Q ss_pred CceEEEEEEecCceeEEeecCCchHHHHHHhhCC
Q psy7546 117 DDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150 (150)
Q Consensus 117 ~~~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~tGA 150 (150)
.+....+.||.+.++.+||++|.+|+.|.++||+
T Consensus 558 ap~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~ 591 (723)
T 3cdi_A 558 APRIHTIKINPDKIKDVIGKGGSVIRALTEETGT 591 (723)
T ss_dssp ----------------------------------
T ss_pred CceEEEEEECHHHhcccccccceeeeeeehhhCc
Confidence 4556778999999999999999999999999986
No 81
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=93.31 E-value=0.018 Score=49.61 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=11.4
Q ss_pred ceEEEEEEecCceeEEeecCCchHHHHHHhhCC
Q psy7546 118 DYDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150 (150)
Q Consensus 118 ~~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~tGA 150 (150)
+....+.||.+.+|.+||++|.+||.|++.|||
T Consensus 597 p~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~ 629 (757)
T 1e3p_A 597 PRIITVKIPVDKIGEVIGPKRQMINQIQEDTGA 629 (757)
T ss_dssp CBCCCC------------------CTTCCCCCS
T ss_pred ceeEEEEEChHHeehcccccceeeehhhHhhCC
Confidence 344568899999999999999999999999986
No 82
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=92.76 E-value=0.022 Score=39.31 Aligned_cols=40 Identities=25% Similarity=0.355 Sum_probs=34.8
Q ss_pred CCceEEEEEeeCCccceEecCCchHHHHHHHHhCCeEEec
Q psy7546 18 PNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVP 57 (150)
Q Consensus 18 ~~~~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~ 57 (150)
++.-.+.+.||.++.+..|||+|.+++-..+-||.++.+.
T Consensus 100 ~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 100 NGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp TTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred CCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 3456788999999999999999999999999999877654
No 83
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=91.35 E-value=0.097 Score=39.25 Aligned_cols=39 Identities=18% Similarity=0.184 Sum_probs=35.6
Q ss_pred ceEEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecC
Q psy7546 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD 58 (150)
Q Consensus 20 ~~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~ 58 (150)
.-...+.||.++.++.|||+|.|++.-..-||.+|.+..
T Consensus 183 ~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~ 221 (251)
T 2asb_A 183 ARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRG 221 (251)
T ss_dssp TTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred CcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceE
Confidence 356889999999999999999999999999999999864
No 84
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=90.21 E-value=0.16 Score=39.83 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=35.5
Q ss_pred CceEEEEEeeCCccceEecCCchHHHHHHHHhCCeEEec
Q psy7546 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVP 57 (150)
Q Consensus 19 ~~~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~ 57 (150)
+.-...+.||.++.++.|||+|.|++.-..-||.+|.+.
T Consensus 301 ~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~ 339 (344)
T 1hh2_P 301 ENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIK 339 (344)
T ss_dssp TTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEE
T ss_pred CCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEecee
Confidence 455788999999999999999999999999999999875
No 85
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=89.51 E-value=0.18 Score=39.86 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=36.4
Q ss_pred CceEEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecC
Q psy7546 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD 58 (150)
Q Consensus 19 ~~~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~ 58 (150)
+.-.+.+.||.++.++.|||+|.+++-...-||.+|.|..
T Consensus 305 ~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~ 344 (366)
T 1k0r_A 305 TARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRG 344 (366)
T ss_dssp TTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEE
T ss_pred CCcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeE
Confidence 4567889999999999999999999999999999999864
No 86
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=89.39 E-value=0.14 Score=35.57 Aligned_cols=66 Identities=23% Similarity=0.157 Sum_probs=39.5
Q ss_pred EEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecCCCCCCce-EEEecChHHHHHHHHHHHHHHHHhh
Q psy7546 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERI-LTIFAELENGLKVIEEVLPALDEIR 90 (150)
Q Consensus 22 ~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~~~~erv-v~I~G~~~~v~~A~~~i~~~~~~~~ 90 (150)
++.+-+..+..|.+|||.|.+++.||--+...++-.. . .++ +-+.+=.+.-.+.+..+...+.+..
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~~~vn~~~--~-~~V~LDve~YRerReetL~~lA~~~A~kV 100 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLFNWIHPTY--G-YSIRLEISTFLQNQEKVMDTQLQSVIMTV 100 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHHHHHHHHH--S-CEEEEEETTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHHHHhhhcC--C-ceEEEEhHHhHHHHHHHHHHHHHHHHHHH
Confidence 4556667888999999999999999965532222111 0 111 2234444555555656655555544
No 87
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=88.81 E-value=0.14 Score=32.42 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=23.5
Q ss_pred EEEEEeeCCccceEecCCchHHHHHHHH
Q psy7546 22 ELRLLIPSRVAGSVIGKGGSNIARLRND 49 (150)
Q Consensus 22 ~~~l~vp~~~vg~IIGk~G~~Ik~l~~~ 49 (150)
..++.|....-|.|||++|+.|++|+.+
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 4567788888899999999999988765
No 88
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=83.33 E-value=0.36 Score=33.43 Aligned_cols=29 Identities=17% Similarity=0.295 Sum_probs=24.9
Q ss_pred EEEEEEecCceeEEeecCCchHHHHHHhh
Q psy7546 120 DIRLIVHQSQAGCIIGKGGTKIKELRDTF 148 (150)
Q Consensus 120 ~~~l~vp~~~~g~iIGk~G~~Ik~i~~~t 148 (150)
++.+.+..+..|.+|||.|.+++.||-.+
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~ 62 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLL 62 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHH
Confidence 56677888999999999999999998654
No 89
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=80.01 E-value=0.43 Score=30.16 Aligned_cols=29 Identities=21% Similarity=0.480 Sum_probs=24.1
Q ss_pred eEEEEEEecCceeEEeecCCchHHHHHHh
Q psy7546 119 YDIRLIVHQSQAGCIIGKGGTKIKELRDT 147 (150)
Q Consensus 119 ~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~ 147 (150)
..+++.|-...-|.|||++|+.|++|+..
T Consensus 35 ~~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 35 TRTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp SCEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred CeEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 45777888888899999999999988764
No 90
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=78.19 E-value=0.89 Score=33.47 Aligned_cols=68 Identities=16% Similarity=0.117 Sum_probs=40.4
Q ss_pred EEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecCCCCCCceEEEecChHHHHHHHHHHHHHHHHh
Q psy7546 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEI 89 (150)
Q Consensus 22 ~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~~~~ervv~I~G~~~~v~~A~~~i~~~~~~~ 89 (150)
.+.+.+.....|.+|||.|.+++.||.-++..++-....-..-++-+.|-.+.-.+.+..+...+.+.
T Consensus 93 ~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn~~~~~~~rv~LDi~~YR~rR~e~L~~lA~~~A~k 160 (225)
T 3gku_A 93 EMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVNKSSSDYIRVKLDTENYRERRKETLETLAKNIAYK 160 (225)
T ss_dssp EEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHHHTCSSCCEEEEESTTHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCccceeecCCCeEhHHHHHHHHHHHHhcCCCceEEEEecchHHHHHHHHHHHHHHHHHHH
Confidence 34455567789999999999999999887755543321101112334554455445555554444443
No 91
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=73.18 E-value=1.2 Score=33.11 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=24.0
Q ss_pred EEEEEeeCCccceEecCCchHHHHHHHHh
Q psy7546 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDF 50 (150)
Q Consensus 22 ~~~l~vp~~~vg~IIGk~G~~Ik~l~~~t 50 (150)
-.++.|....-|.|||++|..|++|+++.
T Consensus 45 ~i~I~I~t~rPg~VIGkkG~~I~~L~~~l 73 (240)
T 3u5c_D 45 KTEVIIRATRTQDVLGENGRRINELTLLV 73 (240)
T ss_dssp CEEEEEEESCHHHHHTTTTCTHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 35677888888999999999999888653
No 92
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=72.15 E-value=1.4 Score=32.06 Aligned_cols=27 Identities=33% Similarity=0.539 Sum_probs=22.4
Q ss_pred EEEEeeCCccceEecCCchHHHHHHHH
Q psy7546 23 LRLLIPSRVAGSVIGKGGSNIARLRND 49 (150)
Q Consensus 23 ~~l~vp~~~vg~IIGk~G~~Ik~l~~~ 49 (150)
.++.|....-|.|||++|..|++|+++
T Consensus 42 ~~I~I~t~rPg~vIG~~G~~I~~L~~~ 68 (210)
T 3j20_C 42 TKVIIFAANPGYVIGRGGRRIRELTRI 68 (210)
T ss_dssp CEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 456777778899999999999988754
No 93
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=72.14 E-value=1.6 Score=32.51 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=24.2
Q ss_pred EEEEEeeCCccceEecCCchHHHHHHHHh
Q psy7546 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDF 50 (150)
Q Consensus 22 ~~~l~vp~~~vg~IIGk~G~~Ik~l~~~t 50 (150)
..++.|....-|.|||++|+.|++|+++.
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~L 73 (243)
T 2zkq_c 45 RTEIIILATRTQNVLGEKGRRIRELTAVV 73 (243)
T ss_dssp EECCEEEESCHHHHHCGGGHHHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchHHHHHHHHH
Confidence 45677777888999999999999988764
No 94
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=71.68 E-value=1.6 Score=32.47 Aligned_cols=29 Identities=21% Similarity=0.229 Sum_probs=24.5
Q ss_pred eEEEEEeeCCccceEecCCchHHHHHHHH
Q psy7546 21 VELRLLIPSRVAGSVIGKGGSNIARLRND 49 (150)
Q Consensus 21 ~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~ 49 (150)
...++.|....-|.|||++|..|++|+++
T Consensus 47 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 75 (243)
T 2xzm_C 47 TKTEIRIKATKPQQVIGVEGKKHKELTQF 75 (243)
T ss_dssp SCEEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred CeEEEEEEcCCCceEECCCchHHHHHHHH
Confidence 34677788888999999999999998875
No 95
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=70.29 E-value=1.2 Score=32.85 Aligned_cols=28 Identities=21% Similarity=0.392 Sum_probs=23.9
Q ss_pred EEEEEeeCCccceEecCCchHHHHHHHH
Q psy7546 22 ELRLLIPSRVAGSVIGKGGSNIARLRND 49 (150)
Q Consensus 22 ~~~l~vp~~~vg~IIGk~G~~Ik~l~~~ 49 (150)
..++.|....-|.|||++|+.|++|+++
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (227)
T 3iz6_B 45 RTEIIIRATRTQNVLGEKGRRIRELTSV 72 (227)
T ss_dssp EECCEEECTTHHHHHCSSSSHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 4567788888999999999999998765
No 96
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=68.65 E-value=1.9 Score=32.62 Aligned_cols=37 Identities=14% Similarity=0.290 Sum_probs=28.1
Q ss_pred ceEEEEEeeC-CccceEecCCchHHHHHHH--------HhCCeEEe
Q psy7546 20 DVELRLLIPS-RVAGSVIGKGGSNIARLRN--------DFKASVTV 56 (150)
Q Consensus 20 ~~~~~l~vp~-~~vg~IIGk~G~~Ik~l~~--------~tg~~I~i 56 (150)
.+...++|.. ++.+.||||+|+.||+|.. ..|++|.+
T Consensus 239 ~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 239 VIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp EEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred EEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 4566678885 6789999999999998764 36666655
No 97
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=68.51 E-value=0.72 Score=35.02 Aligned_cols=29 Identities=31% Similarity=0.472 Sum_probs=22.9
Q ss_pred eEEEEEEecC-ceeEEeecCCchHHHHHHh
Q psy7546 119 YDIRLIVHQS-QAGCIIGKGGTKIKELRDT 147 (150)
Q Consensus 119 ~~~~l~vp~~-~~g~iIGk~G~~Ik~i~~~ 147 (150)
+...+.|..+ +.+.||||+|++||+|...
T Consensus 240 i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ 269 (308)
T 3iev_A 240 IKGEIIVDRENLKPIIIGKKGQRLKEIGKR 269 (308)
T ss_dssp EEEEEEESSGGGHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEEEccCCcceEEEcCCcHHHHHHHHH
Confidence 4556667655 6799999999999999765
No 98
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=66.43 E-value=1.2 Score=32.34 Aligned_cols=34 Identities=29% Similarity=0.518 Sum_probs=25.3
Q ss_pred EEEEeeCCccceEecCCchHHHHHHHH----hCCeEEe
Q psy7546 23 LRLLIPSRVAGSVIGKGGSNIARLRND----FKASVTV 56 (150)
Q Consensus 23 ~~l~vp~~~vg~IIGk~G~~Ik~l~~~----tg~~I~i 56 (150)
.++.|....-|.|||++|+.|++|+++ ++..+++
T Consensus 63 i~I~I~~~rpg~viGk~G~~i~~L~~~l~k~~~~~v~I 100 (206)
T 3r8n_C 63 IRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQI 100 (206)
T ss_dssp BCCEEEESCHHHHHCSSSHHHHHHHHHHHHHHSSCBCC
T ss_pred EEEEEEECCCCccccCcchHHHHHHHHHHHHHCCceEE
Confidence 456667777899999999999988754 5654444
No 99
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=65.68 E-value=1.2 Score=32.77 Aligned_cols=29 Identities=21% Similarity=0.454 Sum_probs=24.6
Q ss_pred EEEEEEecCceeEEeecCCchHHHHHHhh
Q psy7546 120 DIRLIVHQSQAGCIIGKGGTKIKELRDTF 148 (150)
Q Consensus 120 ~~~l~vp~~~~g~iIGk~G~~Ik~i~~~t 148 (150)
.+.+.+.....|.+|||.|.+++.||-.+
T Consensus 93 ~i~i~i~g~d~g~LIGk~G~tLdALQyL~ 121 (225)
T 3gku_A 93 EMNVNLKGDDMGILIGKRGQTLDSLQYLV 121 (225)
T ss_dssp EEEEEEECHHHHHCSTTHHHHHHHHHHHH
T ss_pred EEEEEEcCCccceeecCCCeEhHHHHHHH
Confidence 45667777889999999999999998765
No 100
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=63.21 E-value=1.5 Score=32.47 Aligned_cols=27 Identities=37% Similarity=0.647 Sum_probs=22.0
Q ss_pred EEEEeeCCccceEecCCchHHHHHHHH
Q psy7546 23 LRLLIPSRVAGSVIGKGGSNIARLRND 49 (150)
Q Consensus 23 ~~l~vp~~~vg~IIGk~G~~Ik~l~~~ 49 (150)
.++.|....-|.|||++|+.|++|+++
T Consensus 64 i~I~I~t~rPg~vIGkkG~~I~~L~~~ 90 (233)
T 3i1m_C 64 IRVTIHTARPGIVIGKKGEDVEKLRKV 90 (233)
T ss_dssp BCCEEEESCHHHHHCSTTHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHH
Confidence 456667777899999999999988754
No 101
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=60.68 E-value=2.4 Score=31.41 Aligned_cols=27 Identities=33% Similarity=0.623 Sum_probs=21.6
Q ss_pred EEEEeeCCccceEecCCchHHHHHHHH
Q psy7546 23 LRLLIPSRVAGSVIGKGGSNIARLRND 49 (150)
Q Consensus 23 ~~l~vp~~~vg~IIGk~G~~Ik~l~~~ 49 (150)
.++.|....-|.|||++|+.|++|+++
T Consensus 64 i~I~I~tarPg~vIGkkG~~I~~L~~~ 90 (239)
T 2vqe_C 64 VAVTVHVAKPGVVIGRGGERIRVLREE 90 (239)
T ss_dssp BCCEEEESCGGGTSCSSSSHHHHHHHH
T ss_pred EEEEEEeCCCcceecCCchHHHHHHHH
Confidence 345566677899999999999988765
No 102
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=57.92 E-value=2.1 Score=31.31 Aligned_cols=27 Identities=11% Similarity=0.240 Sum_probs=21.3
Q ss_pred EEEEeeCCccceEecCCchHHHHHHHH
Q psy7546 23 LRLLIPSRVAGSVIGKGGSNIARLRND 49 (150)
Q Consensus 23 ~~l~vp~~~vg~IIGk~G~~Ik~l~~~ 49 (150)
.++.|....-|.|||++|+.|++|+++
T Consensus 72 i~I~I~~~rPg~vIGk~g~~i~~L~~~ 98 (218)
T 3bbn_C 72 IQVIIHMGFPKLLIENRPQGVEDLKIN 98 (218)
T ss_dssp BCCEEEESCTTTTSCSSSCTTHHHHHH
T ss_pred EEEEEEecCCCcEecCCcHHHHHHHHH
Confidence 345566667789999999999998765
No 103
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=56.67 E-value=1.2 Score=33.72 Aligned_cols=26 Identities=46% Similarity=0.687 Sum_probs=19.9
Q ss_pred EEEEe-cCceeEEeecCCchHHHHHHh
Q psy7546 122 RLIVH-QSQAGCIIGKGGTKIKELRDT 147 (150)
Q Consensus 122 ~l~vp-~~~~g~iIGk~G~~Ik~i~~~ 147 (150)
.+.|. .++.+.|||++|++||+|...
T Consensus 233 ~i~ve~~~~k~iiig~~g~~lk~i~~~ 259 (301)
T 1wf3_A 233 ILYVERPSQKAIVIGEGGRKIKEIGQA 259 (301)
T ss_dssp EEEESSHHHHHHHHCGGGHHHHHHHHH
T ss_pred EEEEeeCCceEEEEeCCchHHHHHHHH
Confidence 34443 356799999999999999764
No 104
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=56.66 E-value=3.2 Score=30.75 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=24.0
Q ss_pred eEEEEEEecCceeEEeecCCchHHHHHHh
Q psy7546 119 YDIRLIVHQSQAGCIIGKGGTKIKELRDT 147 (150)
Q Consensus 119 ~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~ 147 (150)
..+++.|-...-|.|||++|..|++|+..
T Consensus 44 ~~i~I~I~t~rPg~VIGkkG~~I~~L~~~ 72 (240)
T 3u5c_D 44 TKTEVIIRATRTQDVLGENGRRINELTLL 72 (240)
T ss_dssp SCEEEEEEESCHHHHHTTTTCTHHHHHHH
T ss_pred CeEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 34677788888899999999999998753
No 105
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=54.28 E-value=3.1 Score=30.26 Aligned_cols=28 Identities=32% Similarity=0.765 Sum_probs=22.8
Q ss_pred EEEEEEecCceeEEeecCCchHHHHHHh
Q psy7546 120 DIRLIVHQSQAGCIIGKGGTKIKELRDT 147 (150)
Q Consensus 120 ~~~l~vp~~~~g~iIGk~G~~Ik~i~~~ 147 (150)
.+++.|-...-|.|||++|+.|++|++.
T Consensus 41 ~~~I~I~t~rPg~vIG~~G~~I~~L~~~ 68 (210)
T 3j20_C 41 GTKVIIFAANPGYVIGRGGRRIRELTRI 68 (210)
T ss_dssp CCEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 4567777778899999999999998653
No 106
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=54.25 E-value=24 Score=25.62 Aligned_cols=46 Identities=22% Similarity=0.323 Sum_probs=35.3
Q ss_pred EEeeCCccceEecCCchHHHHHHHHhCCeEEecCCCCCCceEEEecChHH
Q psy7546 25 LLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELEN 74 (150)
Q Consensus 25 l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~~~~ervv~I~G~~~~ 74 (150)
+-++...+..++|+++..++.|.+.+++.|-+-.+ -.|+|.+....
T Consensus 140 ~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~N----G~IWi~~~~~~ 185 (229)
T 2ba0_A 140 VAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQN----GLIWVNGDRRK 185 (229)
T ss_dssp EECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECTT----SEEEEESCHHH
T ss_pred EEECHHHhHHHhcCCchHHHHhcccCCeEEEEECC----cEEEEeCCchh
Confidence 34556667788899999999999999999988654 35778876653
No 107
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=52.73 E-value=4.3 Score=30.16 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=24.5
Q ss_pred eEEEEEEecCceeEEeecCCchHHHHHHh
Q psy7546 119 YDIRLIVHQSQAGCIIGKGGTKIKELRDT 147 (150)
Q Consensus 119 ~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~ 147 (150)
..+++.|-...-|.|||++|+.|++|+..
T Consensus 47 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 75 (243)
T 2xzm_C 47 TKTEIRIKATKPQQVIGVEGKKHKELTQF 75 (243)
T ss_dssp SCEEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred CeEEEEEEcCCCceEECCCchHHHHHHHH
Confidence 45778888888899999999999998764
No 108
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=51.04 E-value=3.3 Score=30.48 Aligned_cols=29 Identities=21% Similarity=0.538 Sum_probs=24.4
Q ss_pred eEEEEEEecCceeEEeecCCchHHHHHHh
Q psy7546 119 YDIRLIVHQSQAGCIIGKGGTKIKELRDT 147 (150)
Q Consensus 119 ~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~ 147 (150)
..+++.|-...-|.|||++|+.|++|+..
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (227)
T 3iz6_B 44 MRTEIIIRATRTQNVLGEKGRRIRELTSV 72 (227)
T ss_dssp TEECCEEECTTHHHHHCSSSSHHHHHHHH
T ss_pred CcEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 45677888888999999999999998753
No 109
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=48.42 E-value=67 Score=23.23 Aligned_cols=60 Identities=17% Similarity=0.148 Sum_probs=40.6
Q ss_pred EEeeCCccceEecCCchHHHHHHHHhCCeEEecCCCCCCceEEEecChHHHHHHHHHHHHHHHH
Q psy7546 25 LLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDE 88 (150)
Q Consensus 25 l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~~~~ervv~I~G~~~~v~~A~~~i~~~~~~ 88 (150)
+-++...+..++|+++..+..|.+++++.|-+-.+ -.|+|.+....-..++...+..+++
T Consensus 152 v~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG~N----G~IWi~~~~~~~~~~~~~ai~~~e~ 211 (235)
T 2z0s_A 152 VEISPAKVPRVIGRKMSMLKTLEEKTECKIFVARN----GRIHLECPNEDLEAIAVMAIKIIDE 211 (235)
T ss_dssp EECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEETT----TEEEEECSCHHHHHHHHHHHHHHHH
T ss_pred EEECHHHhHHHhcCcchHHHHhcccCCeEEEEeCC----CEEEEecCCHHHHHHHHHHHHHHHh
Confidence 45666778889999999999999899999988663 4677776443333333333334443
No 110
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=45.80 E-value=3.2 Score=30.09 Aligned_cols=28 Identities=36% Similarity=0.779 Sum_probs=22.2
Q ss_pred EEEEEEecCceeEEeecCCchHHHHHHh
Q psy7546 120 DIRLIVHQSQAGCIIGKGGTKIKELRDT 147 (150)
Q Consensus 120 ~~~l~vp~~~~g~iIGk~G~~Ik~i~~~ 147 (150)
.+++.|-...-|.|||++|+.|++|+..
T Consensus 62 ~i~I~I~~~rpg~viGk~G~~i~~L~~~ 89 (206)
T 3r8n_C 62 SIRVTIHTARPGIVIGKKGEDVEKLRKV 89 (206)
T ss_dssp SBCCEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred eEEEEEEECCCCccccCcchHHHHHHHH
Confidence 3456666777889999999999998753
No 111
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=45.58 E-value=5.5 Score=33.49 Aligned_cols=87 Identities=17% Similarity=0.217 Sum_probs=52.5
Q ss_pred EecCCchHHHHHHHHhCCeEEecCCCCCCceEEEecChHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCCC
Q psy7546 35 VIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGL 114 (150)
Q Consensus 35 IIGk~G~~Ik~l~~~tg~~I~i~~~~~~ervv~I~G~~~~v~~A~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (150)
.+-..|..||+|-++.--+|.+-.+++ ....-++|...|.+.+.+..... +.
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~-----------~~-------- 102 (651)
T 3af5_A 51 AIMKDGELIKDLAKVLKKRISVRPDPE---------VLLPPEEAEKLIFEIVPKEAEIT-----------NI-------- 102 (651)
T ss_dssp -----CCSHHHHHHHHTSCEEEECCGG---------GSCCHHHHHHHHHHHSCGGGCCC-----------EE--------
T ss_pred HhhcccHHHHHHHHHhhceEEEeCChh---------hcCCHHHHHHHHHHhCCCccCcc-----------ce--------
Confidence 445778899999999999988876542 01112456666666665432100 00
Q ss_pred CCCceEEEEEEecCceeEEeecCCchHHHHHHhhC
Q psy7546 115 GKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFD 149 (150)
Q Consensus 115 ~~~~~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~tG 149 (150)
.-...+-.+++-...-|.++||.|.++++|.+.+|
T Consensus 103 ~~~~~~~~v~~~~~~~~~~~g~~~~~~~~i~~~~~ 137 (651)
T 3af5_A 103 AFDPSVGEVLIEAKKPGLVIGKNGETLRLITQKVK 137 (651)
T ss_dssp EEETTTTEEEEEESSTTTTSCTTSHHHHHHHHHHC
T ss_pred eecCCCceEEEEECCCCccccccchhHHHHhhccC
Confidence 01122334566666668999999999999998876
No 112
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=45.49 E-value=5.4 Score=33.51 Aligned_cols=86 Identities=16% Similarity=0.248 Sum_probs=53.2
Q ss_pred ecCCchHHHHHHHHhCCeEEecCCCCCCceEEEecChHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCCCC
Q psy7546 36 IGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLG 115 (150)
Q Consensus 36 IGk~G~~Ik~l~~~tg~~I~i~~~~~~ervv~I~G~~~~v~~A~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (150)
+-..|..||+|-++.--+|.+-.+++ ....-++|...|.+.+.+......- .
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~ 98 (640)
T 2xr1_A 47 FADDGNIIRNLAKELRTRIAMRPDPR---------VLATPEDSISIIEEVVPKESVISSY-------------------Y 98 (640)
T ss_dssp HHHCTHHHHHHHHHHTSCEEEEECGG---------GCCCHHHHHHHHHHHSCGGGCEEEE-------------------E
T ss_pred hccccHHHHHHHHHhhceEEEeCChh---------hcCCHHHHHHHHHHhCCCccCccce-------------------e
Confidence 34667888999988888888765431 0111245666666666443211000 0
Q ss_pred CCceEEEEEEecCceeEEeecCCchHHHHHHhhC
Q psy7546 116 KDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFD 149 (150)
Q Consensus 116 ~~~~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~tG 149 (150)
-...+-.+.+-...-|.++||.|.+.++|.+.+|
T Consensus 99 ~~~~~~~v~~~~~~~~~~~g~~~~~~~~i~~~~~ 132 (640)
T 2xr1_A 99 FDPDSGEVIIEAEKPGLVIGKHGATLREITKQIG 132 (640)
T ss_dssp ECTTTSEEEEEESSHHHHHCSSSHHHHHHHHHHC
T ss_pred ecCCCceEEEEeCCCCcccccchhhHHHHHhccC
Confidence 1222344556666668999999999999998876
No 113
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=44.22 E-value=3.4 Score=31.23 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=23.2
Q ss_pred EEeeC-CccceEecCCchHHHHHHH--------HhCCeEEe
Q psy7546 25 LLIPS-RVAGSVIGKGGSNIARLRN--------DFKASVTV 56 (150)
Q Consensus 25 l~vp~-~~vg~IIGk~G~~Ik~l~~--------~tg~~I~i 56 (150)
+.|.. ++-+.||||+|+.||+|.. -.|++|.+
T Consensus 234 i~ve~~~~k~iiig~~g~~lk~i~~~ar~~~~~~~~~~v~l 274 (301)
T 1wf3_A 234 LYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYL 274 (301)
T ss_dssp EEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred EEEeeCCceEEEEeCCchHHHHHHHHHHHHHHHHHCCceEE
Confidence 44543 6678999999999998764 35666655
No 114
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=42.73 E-value=3.8 Score=30.26 Aligned_cols=28 Identities=36% Similarity=0.779 Sum_probs=22.3
Q ss_pred EEEEEEecCceeEEeecCCchHHHHHHh
Q psy7546 120 DIRLIVHQSQAGCIIGKGGTKIKELRDT 147 (150)
Q Consensus 120 ~~~l~vp~~~~g~iIGk~G~~Ik~i~~~ 147 (150)
.+++.|-...-|.|||++|+.|++|+..
T Consensus 63 ~i~I~I~t~rPg~vIGkkG~~I~~L~~~ 90 (233)
T 3i1m_C 63 SIRVTIHTARPGIVIGKKGEDVEKLRKV 90 (233)
T ss_dssp CBCCEEEESCHHHHHCSTTHHHHHHHHH
T ss_pred eEEEEEEECCCCccccCcchHHHHHHHH
Confidence 3556666777889999999999998753
No 115
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=42.16 E-value=5.7 Score=29.39 Aligned_cols=27 Identities=37% Similarity=0.856 Sum_probs=21.2
Q ss_pred EEEEEecCceeEEeecCCchHHHHHHh
Q psy7546 121 IRLIVHQSQAGCIIGKGGTKIKELRDT 147 (150)
Q Consensus 121 ~~l~vp~~~~g~iIGk~G~~Ik~i~~~ 147 (150)
+++.|-...-|.|||++|+.|++|+..
T Consensus 64 i~I~I~tarPg~vIGkkG~~I~~L~~~ 90 (239)
T 2vqe_C 64 VAVTVHVAKPGVVIGRGGERIRVLREE 90 (239)
T ss_dssp BCCEEEESCGGGTSCSSSSHHHHHHHH
T ss_pred EEEEEEeCCCcceecCCchHHHHHHHH
Confidence 445566677799999999999988754
No 116
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=41.98 E-value=21 Score=27.52 Aligned_cols=67 Identities=15% Similarity=0.228 Sum_probs=51.0
Q ss_pred CCCceEEEEEee--CCccceEecCCchHHHHHHHHhC-CeEEecCC-CCCCceEEEecChHHHHHHHHHHHHHHHHhhh
Q psy7546 17 GPNDVELRLLIP--SRVAGSVIGKGGSNIARLRNDFK-ASVTVPDC-PGPERILTIFAELENGLKVIEEVLPALDEIRQ 91 (150)
Q Consensus 17 ~~~~~~~~l~vp--~~~vg~IIGk~G~~Ik~l~~~tg-~~I~i~~~-~~~ervv~I~G~~~~v~~A~~~i~~~~~~~~~ 91 (150)
+++.+.+++++| .+.. +.+..||...| ..|..+.+ +++..+-.++|...|+-.|+.++...|-..+.
T Consensus 196 ~~~~f~~KVl~pY~~~v~--------e~l~~lq~~fgg~lvr~P~SRnst~EmY~vsGa~gNIV~aVn~tSr~Ll~Rm~ 266 (321)
T 3lkz_A 196 GPREFCVKVLCPYMPKVI--------EKMELLQRRYGGGLVRNPLSRNSTHEMYWVSRASGNVVHSVNMTSQVLLGRME 266 (321)
T ss_dssp CCCEEEEEESCTTSHHHH--------HHHHHHHHHHCCEEECCTTSCTTCCCEEEETTCCSCHHHHHHHHHHHHHHTTS
T ss_pred CCCcEEEEEcCCCChHHH--------HHHHHHHHHhCCEeEeCCCCCCCcceEEEEecCCCCeeeeHHHHHHHHHHHhh
Confidence 346788889888 3221 56788888887 56666654 46889999999999999999999887776553
No 117
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=41.62 E-value=4 Score=30.31 Aligned_cols=29 Identities=21% Similarity=0.480 Sum_probs=23.9
Q ss_pred eEEEEEEecCceeEEeecCCchHHHHHHh
Q psy7546 119 YDIRLIVHQSQAGCIIGKGGTKIKELRDT 147 (150)
Q Consensus 119 ~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~ 147 (150)
..+++.|-...-|.|||++|..|++|++.
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (243)
T 2zkq_c 44 TRTEIIILATRTQNVLGEKGRRIRELTAV 72 (243)
T ss_dssp TEECCEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred CcEEEEEEeCCCceEEcCCchHHHHHHHH
Confidence 35667777788899999999999998764
No 118
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=41.46 E-value=4.8 Score=29.35 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=20.9
Q ss_pred EEEEEecCceeEEeecCCchHHHHHHh
Q psy7546 121 IRLIVHQSQAGCIIGKGGTKIKELRDT 147 (150)
Q Consensus 121 ~~l~vp~~~~g~iIGk~G~~Ik~i~~~ 147 (150)
+++.|-...-|.|||++|..|++|++.
T Consensus 72 i~I~I~~~rPg~vIGk~g~~i~~L~~~ 98 (218)
T 3bbn_C 72 IQVIIHMGFPKLLIENRPQGVEDLKIN 98 (218)
T ss_dssp BCCEEEESCTTTTSCSSSCTTHHHHHH
T ss_pred EEEEEEecCCCcEecCCcHHHHHHHHH
Confidence 445566666788999999999998753
No 119
>2kie_A Inositol polyphosphate 5-phosphatase OCRL-1; INPP5B, clathrin, endocytosis, alternative splicing, cataract, disease mutation, hydrolase; NMR {Homo sapiens}
Probab=40.05 E-value=50 Score=21.45 Aligned_cols=42 Identities=24% Similarity=0.171 Sum_probs=30.1
Q ss_pred HHHHHhCCeEEecCCCCCCceEEEecChHHHHHHHHHHHHHHH
Q psy7546 45 RLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALD 87 (150)
Q Consensus 45 ~l~~~tg~~I~i~~~~~~ervv~I~G~~~~v~~A~~~i~~~~~ 87 (150)
.|-..|||+|++..+-..||.+.|.- .+.+.+.+..+....+
T Consensus 80 DIasntgcKIRvqgd~t~ErlfEIpD-ee~cl~fL~~v~~aqe 121 (124)
T 2kie_A 80 DIASNSGCKIRVQGDWIRERRFEIPD-EEHCLKFLSAVLAAQK 121 (124)
T ss_dssp CGGGCSSEEEEEESSSCSCEEEEECC-HHHHHHHHHHHHHHHH
T ss_pred eccCCCCcEEEEecccchhheeeCCC-HHHHHHHHHHHHHHHh
Confidence 45567899999998767899999965 4555556666655544
No 120
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=36.23 E-value=5.2 Score=33.56 Aligned_cols=87 Identities=20% Similarity=0.303 Sum_probs=51.7
Q ss_pred EecCCchHHHHHHHHhCCeEEecCCCCCCceEEEecChHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCCC
Q psy7546 35 VIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGL 114 (150)
Q Consensus 35 IIGk~G~~Ik~l~~~tg~~I~i~~~~~~ervv~I~G~~~~v~~A~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (150)
.+-..|..||+|-++.--+|.+-.+++ ....-++|...|.+.+.+..... +.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~-----------~~-------- 93 (636)
T 2ycb_A 42 IITENGNLIRDIAKDIRKRIIIRSDRS---------VLMDPEKAIRKIHEIVPEEAKIT-----------NI-------- 93 (636)
T ss_dssp HHHSCTHHHHHHHHHHTSCEEEEECGG---------GCCCHHHHHHHHHHTSCSTTCEE-----------EE--------
T ss_pred HhhcccHHHHHHHHHhhceEEEeCChh---------hcCCHHHHHHHHHHhCCCccCcc-----------ce--------
Confidence 344678888999888888887765431 01112445555555543321000 00
Q ss_pred CCCceEEEEEEecCceeEEeecCCchHHHHHHhhC
Q psy7546 115 GKDDYDIRLIVHQSQAGCIIGKGGTKIKELRDTFD 149 (150)
Q Consensus 115 ~~~~~~~~l~vp~~~~g~iIGk~G~~Ik~i~~~tG 149 (150)
.-...+-.+.+-...-|.+||+.|.+.++|.+.+|
T Consensus 94 ~~~~~~~~v~~~~~~p~~~~g~~~~~~~~i~~~~~ 128 (636)
T 2ycb_A 94 SFDDVTCEVIIEARKPGLVIGKYGSTSREIVKNTG 128 (636)
T ss_dssp EEETTTTEEEEEESCTHHHHCTTSHHHHHHHHHHC
T ss_pred EecCCCceEEEEECCCCccccccchhHHHHhhccC
Confidence 00112334555556668999999999999999886
No 121
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=34.15 E-value=7.5 Score=29.19 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=21.0
Q ss_pred EEEEEEe-cCceeEEeecCCchHHHHHHh
Q psy7546 120 DIRLIVH-QSQAGCIIGKGGTKIKELRDT 147 (150)
Q Consensus 120 ~~~l~vp-~~~~g~iIGk~G~~Ik~i~~~ 147 (150)
...+.|. .++.+.|||++|++||+|...
T Consensus 232 ~~~i~v~~~~~k~i~ig~~G~~~k~ig~~ 260 (301)
T 1ega_A 232 NGLILVEREGQKKMVIGNKGAKIKTIGIE 260 (301)
T ss_dssp EEEEEESSHHHHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEEEECCceEEEECCCcHHHHHHHHH
Confidence 3555553 346799999999999999654
No 122
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=28.01 E-value=36 Score=23.55 Aligned_cols=27 Identities=7% Similarity=0.289 Sum_probs=23.2
Q ss_pred eEEEEEeeCCccceEecCCchHHHHH-HHHh
Q psy7546 21 VELRLLIPSRVAGSVIGKGGSNIARL-RNDF 50 (150)
Q Consensus 21 ~~~~l~vp~~~vg~IIGk~G~~Ik~l-~~~t 50 (150)
+...+.||.+..|.+|| .+|+++ ++++
T Consensus 7 l~~~i~I~P~~~~~~i~---~~I~~~L~~~~ 34 (187)
T 1go3_E 7 IADVVKVPPEEFGKDLK---ETVKKILMEKY 34 (187)
T ss_dssp EEEEEEECGGGTTSCHH---HHHHHHHHHHH
T ss_pred EEEEEEECHHHhCccHH---HHHHHHHHHHh
Confidence 45678899999999999 689995 9999
No 123
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=26.93 E-value=16 Score=21.38 Aligned_cols=37 Identities=19% Similarity=0.116 Sum_probs=25.1
Q ss_pred CCCCCceEEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecC
Q psy7546 15 RGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD 58 (150)
Q Consensus 15 ~~~~~~~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~ 58 (150)
....+.+++.+.||.+.+. +...+|.+-|+-++.+.+
T Consensus 36 ~~Y~~~V~l~v~vp~~~~~-------~~~~~L~d~t~G~~~~~~ 72 (76)
T 3lh2_S 36 SDVQAFVLLRVALPAAKVA-------EFSAKLADFSGGSLQLLA 72 (76)
T ss_dssp EEEEEEEEEEEEECC-CC--------CHHHHHHHHHTTCCCBC-
T ss_pred ccccCeEEEEEEECHHHHH-------HHHHHHHHHhCCEEEEEe
Confidence 3345678899999987765 456888888887776644
No 124
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=22.16 E-value=39 Score=19.60 Aligned_cols=12 Identities=17% Similarity=0.130 Sum_probs=10.2
Q ss_pred chHHHHHHhhCC
Q psy7546 139 TKIKELRDTFDA 150 (150)
Q Consensus 139 ~~Ik~i~~~tGA 150 (150)
+.|++|+++|||
T Consensus 11 ~~Vk~LRe~TGa 22 (64)
T 2cp9_A 11 ELLMKLRRKTGY 22 (64)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHhCC
Confidence 568999999986
No 125
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=22.13 E-value=1.2e+02 Score=20.98 Aligned_cols=43 Identities=12% Similarity=-0.014 Sum_probs=32.9
Q ss_pred EEeeCCccceEecCCch-HHHHHHHHhCCeEEecCCCCCCceEEEecC
Q psy7546 25 LLIPSRVAGSVIGKGGS-NIARLRNDFKASVTVPDCPGPERILTIFAE 71 (150)
Q Consensus 25 l~vp~~~vg~IIGk~G~-~Ik~l~~~tg~~I~i~~~~~~ervv~I~G~ 71 (150)
+-||...+..++|+.+. .++.|.+.+++.|-+-.+. .|.|.+.
T Consensus 95 ~~v~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~NG----~IWi~~~ 138 (175)
T 2ja9_A 95 IDVNLNFARQLLFNNDFPLLKVLAAHTKFEVAIGLNG----KIWVKCE 138 (175)
T ss_dssp EECCHHHHHHHHHCTTCCHHHHHHTTCCCEEEEETTT----EEEEECS
T ss_pred EEEcHHHhhHHhcCCCcchHHhhhccCCeEEEEECCc----EEEEecC
Confidence 56777778888888777 8888988899999887653 4667654
No 126
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=21.34 E-value=1e+02 Score=19.62 Aligned_cols=54 Identities=13% Similarity=0.243 Sum_probs=32.9
Q ss_pred ecCCchHHHHHHHHhCCeEEecCC----C---------------CCCceEEEecC-----hHHHHHHHHHHHHHHHHhhh
Q psy7546 36 IGKGGSNIARLRNDFKASVTVPDC----P---------------GPERILTIFAE-----LENGLKVIEEVLPALDEIRQ 91 (150)
Q Consensus 36 IGk~G~~Ik~l~~~tg~~I~i~~~----~---------------~~ervv~I~G~-----~~~v~~A~~~i~~~~~~~~~ 91 (150)
=|+||.++++. +|.+++.++-. | ..+-.++|+.. ..|-+.|+..+..++.+...
T Consensus 23 sGpGGQnVNKv--~SaV~L~~d~~~s~lP~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~Nr~~Al~rL~~~l~~a~~ 100 (108)
T 2jva_A 23 QGAGGQNVNKV--SSAMHLRFDINASSLPPFYKERLLALNDSRITSDGVIVLKAQQYRTQEQNRADALLRLSELIVNAAK 100 (108)
T ss_dssp TTCSSSSSCCC--CCCEEEEEETTTSCCCHHHHHHHHTCSCTTBCTTCEEEEEECCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCC--cceEEEEEEcccccCCHHHHHHHHHHhccccccCCcEEEEECCcCCHHHHHHHHHHHHHHHHHHHcc
Confidence 38999999875 34566665321 0 01334555442 36677788888888777653
No 127
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=20.96 E-value=1.6e+02 Score=21.98 Aligned_cols=66 Identities=20% Similarity=0.161 Sum_probs=49.4
Q ss_pred CceEEEEEeeCCccceEecCCchHHHHHHHHhC-CeEEecCC-CCCCceEEEecChHHHHHHHHHHHHHHHHhh
Q psy7546 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFK-ASVTVPDC-PGPERILTIFAELENGLKVIEEVLPALDEIR 90 (150)
Q Consensus 19 ~~~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg-~~I~i~~~-~~~ervv~I~G~~~~v~~A~~~i~~~~~~~~ 90 (150)
+.+.+++++|..- .++ +.+..+|...| ..+..+.+ +++..+-.++|...++..++.+....+-..+
T Consensus 180 ~~fc~KVl~py~p--~v~----e~l~~lq~~fgg~lVR~P~SRnsThEMY~Vsg~~~niv~~v~~~s~~Ll~R~ 247 (267)
T 3p8z_A 180 NQFCIKVLNPYMP--TVI----EHLERLQRKHGGMLVRNPLSRNSTHEMYWISNGTGNIVSSVNMVSRLLLNRF 247 (267)
T ss_dssp CEEEEEESCCCSH--HHH----HHHHHHHHHHCCEEECCTTSCTTCCCEEEESSCCCCHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEccCCCh--hHH----HHHHHHHHHhCCEeEeCCCCCCCcceEEEEecCCCceehhHHHHHHHHHHHh
Confidence 5788889888751 000 55688898877 56666654 4788899999999999999988888776654
No 128
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=20.95 E-value=1e+02 Score=19.13 Aligned_cols=58 Identities=9% Similarity=0.039 Sum_probs=40.0
Q ss_pred ceEEEEEeeCCccceEecCCchHHHHHHHHhCCeEEecCCC--------CCCceEEEecChHHHHHHHHHHH
Q psy7546 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--------GPERILTIFAELENGLKVIEEVL 83 (150)
Q Consensus 20 ~~~~~l~vp~~~vg~IIGk~G~~Ik~l~~~tg~~I~i~~~~--------~~ervv~I~G~~~~v~~A~~~i~ 83 (150)
...+++..+.+.+ ..-.|.+|-.++|+.++|.... -..=++.+.|+.+++.+|+..+.
T Consensus 21 ~~lvrL~f~g~~~------~~PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~ 86 (106)
T 3dhx_A 21 VPMLRLEFTGQSV------DAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQ 86 (106)
T ss_dssp EEEEEEEEEEECT------TCCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHH
T ss_pred ceEEEEEEcCCcc------ChhHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHH
Confidence 3456666654432 3457899999999999987542 13446778999888888776554
No 129
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=20.79 E-value=1.2e+02 Score=18.89 Aligned_cols=37 Identities=14% Similarity=0.328 Sum_probs=26.5
Q ss_pred ccCCCCCCCCCceEEEEEeeCCccceEecCCchHHHH
Q psy7546 9 SNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIAR 45 (150)
Q Consensus 9 ~~~~~~~~~~~~~~~~l~vp~~~vg~IIGk~G~~Ik~ 45 (150)
+....++..+..-++|+..|+++.-.|==+-|.+++.
T Consensus 6 ~~~~~~~~~~~~~~irvhLPNqQrT~V~VrpG~tlrd 42 (95)
T 2l05_A 6 HHHSHMPKSPQKPIVRVFLPNKQRTVVPARCGVTVRD 42 (95)
T ss_dssp ----CCCCCCCSCEEEEEETTTEEEEEECCTTCBHHH
T ss_pred cccccCCCCCCccEEEEECCCCCeEEEEecCCcCHHH
Confidence 3445566667778999999999988887788887754
No 130
>3cgi_A Propanediol utilization protein PDUU; circular permutation, beta barrel, bacterial microcompartmen propanediol, signaling protein; 1.80A {Salmonella typhimurium}
Probab=20.41 E-value=1.5e+02 Score=19.35 Aligned_cols=39 Identities=10% Similarity=0.068 Sum_probs=28.7
Q ss_pred hCCeEEecCCCCCCceEEEecChHHHHHHHHHHHHHHHHhh
Q psy7546 50 FKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEIR 90 (150)
Q Consensus 50 tg~~I~i~~~~~~ervv~I~G~~~~v~~A~~~i~~~~~~~~ 90 (150)
.++.+...+ +..-.+.++|+..+|..|+......+.+..
T Consensus 68 A~V~lv~~~--~g~g~v~i~GdvsaV~aAvea~~~~~~~~~ 106 (124)
T 3cgi_A 68 GAVEIGFLD--RFTGAVVLTGDVSAVEYALKQVTRTLGEMM 106 (124)
T ss_dssp SSEEEEEEE--TTTTEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred cCcEEEEEE--CCEEEEEEEECHHHHHHHHHHHHHHHHhcc
Confidence 344443333 456688999999999999998888887765
Done!