Your job contains 1 sequence.
>psy7546
MEFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP
GPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYD
IRLIVHQSQAGCIIGKGGTKIKELRDTFDA
The BLAST search returned 7 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy7546
(150 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q5T6W2 - symbol:HNRNPK "Heterogeneous nuclear r... 207 3.8e-19 2
UNIPROTKB|E1C453 - symbol:HNRNPK "Heterogeneous nuclear r... 207 8.2e-19 2
UNIPROTKB|I3LQS0 - symbol:HNRNPK "Uncharacterized protein... 207 1.0e-18 2
UNIPROTKB|P61978 - symbol:HNRNPK "Heterogeneous nuclear r... 207 1.3e-18 2
MGI|MGI:99894 - symbol:Hnrnpk "heterogeneous nuclear ribo... 207 1.3e-18 2
RGD|71058 - symbol:Hnrnpk "heterogeneous nuclear ribonucl... 207 1.3e-18 2
UNIPROTKB|Q3T0D0 - symbol:HNRNPK "Heterogeneous nuclear r... 207 1.3e-18 2
UNIPROTKB|H9L0I0 - symbol:HNRPK "Uncharacterized protein"... 204 1.8e-18 2
UNIPROTKB|Q5ZIQ3 - symbol:HNRNPK "Heterogeneous nuclear r... 204 1.8e-18 2
UNIPROTKB|H9L242 - symbol:HNRPK "Uncharacterized protein"... 204 1.8e-18 2
UNIPROTKB|E2RA50 - symbol:E2RA50 "Uncharacterized protein... 207 2.5e-18 2
ZFIN|ZDB-GENE-040426-1926 - symbol:hnrnpk "heterogeneous ... 196 2.7e-18 2
UNIPROTKB|E2RJ54 - symbol:E2RJ54 "Uncharacterized protein... 202 3.5e-18 2
ZFIN|ZDB-GENE-040426-1923 - symbol:hnrpkl "heterogeneous ... 197 1.1e-17 2
UNIPROTKB|J9P8J3 - symbol:J9P8J3 "Uncharacterized protein... 207 3.0e-16 1
FB|FBgn0015907 - symbol:bl "bancal" species:7227 "Drosoph... 172 4.4e-16 2
WB|WBGene00017816 - symbol:F26B1.2b species:6239 "Caenorh... 173 8.3e-16 2
UNIPROTKB|P91277 - symbol:F26B1.2 "Protein F26B1.2, isofo... 173 8.3e-16 2
UNIPROTKB|F1LXN9 - symbol:F1LXN9 "Uncharacterized protein... 167 6.6e-12 1
UNIPROTKB|Q5T6W5 - symbol:HNRNPK "Heterogeneous nuclear r... 139 2.5e-11 2
UNIPROTKB|C9JZY3 - symbol:PCBP4 "Poly(rC)-binding protein... 98 3.3e-08 2
UNIPROTKB|Q5T6W1 - symbol:HNRNPK "Heterogeneous nuclear r... 102 1.1e-07 2
TAIR|locus:2150956 - symbol:AT5G15270 "AT5G15270" species... 109 7.1e-07 2
UNIPROTKB|C9J0A4 - symbol:PCBP4 "Poly(rC)-binding protein... 98 8.8e-07 2
UNIPROTKB|Q0VCU0 - symbol:PCBP4 "Poly(rC)-binding protein... 98 1.7e-06 2
UNIPROTKB|E2RG64 - symbol:PCBP4 "Uncharacterized protein"... 98 1.7e-06 2
UNIPROTKB|P57723 - symbol:PCBP4 "Poly(rC)-binding protein... 98 1.7e-06 2
MGI|MGI:1890471 - symbol:Pcbp4 "poly(rC) binding protein ... 98 1.7e-06 2
RGD|1307910 - symbol:Pcbp4 "poly(rC) binding protein 4" s... 98 1.7e-06 2
UNIPROTKB|I3LRN5 - symbol:PCBP4 "Uncharacterized protein"... 98 1.7e-06 2
ZFIN|ZDB-GENE-040426-2122 - symbol:zgc:65870 "zgc:65870" ... 106 1.9e-06 2
TAIR|locus:2035807 - symbol:AT1G14170 "AT1G14170" species... 96 3.6e-06 2
ZFIN|ZDB-GENE-030131-563 - symbol:pcbp2 "poly(rC) binding... 99 4.3e-06 2
RGD|1307430 - symbol:Pcbp3 "poly(rC) binding protein 3" s... 93 7.5e-06 2
UNIPROTKB|J3QT27 - symbol:PCBP3 "Poly(rC)-binding protein... 93 7.7e-06 2
ZFIN|ZDB-GENE-050522-157 - symbol:pcbp3 "poly(rC) binding... 93 1.0e-05 2
UNIPROTKB|Q17QV0 - symbol:PCBP3 "Uncharacterized protein"... 93 1.1e-05 2
UNIPROTKB|E9PFP8 - symbol:PCBP3 "Poly(rC)-binding protein... 93 1.1e-05 2
UNIPROTKB|E2RCH9 - symbol:PCBP3 "Uncharacterized protein"... 93 1.2e-05 2
UNIPROTKB|E2QUE1 - symbol:PCBP3 "Uncharacterized protein"... 93 1.2e-05 2
UNIPROTKB|P57721 - symbol:PCBP3 "Poly(rC)-binding protein... 93 1.2e-05 2
MGI|MGI:1890470 - symbol:Pcbp3 "poly(rC) binding protein ... 93 1.2e-05 2
UNIPROTKB|D4A1P3 - symbol:Pcbp3 "Protein Pcbp3" species:1... 93 1.2e-05 2
UNIPROTKB|C9J7A9 - symbol:PCBP4 "Poly(rC)-binding protein... 101 1.5e-05 1
ZFIN|ZDB-GENE-050706-149 - symbol:zgc:110045 "zgc:110045"... 103 2.2e-05 1
UNIPROTKB|F8W0G4 - symbol:PCBP2 "Poly(rC)-binding protein... 99 2.4e-05 1
FB|FBgn0262737 - symbol:mub "mushroom-body expressed" spe... 89 2.9e-05 2
UNIPROTKB|C9J5V4 - symbol:PCBP4 "Poly(rC)-binding protein... 98 3.0e-05 1
UNIPROTKB|C9JSA6 - symbol:PCBP4 "Poly(rC)-binding protein... 98 3.0e-05 1
UNIPROTKB|C9JTY5 - symbol:PCBP4 "Poly(rC)-binding protein... 98 3.0e-05 1
UNIPROTKB|H9L011 - symbol:LOC426023 "Uncharacterized prot... 99 4.3e-05 1
WB|WBGene00013347 - symbol:Y59A8B.10 species:6239 "Caenor... 105 4.5e-05 1
UNIPROTKB|Q9GRY9 - symbol:Y59A8B.10 "Protein Y59A8B.10, i... 105 4.5e-05 1
UNIPROTKB|J9P8W8 - symbol:PCBP2 "Uncharacterized protein"... 103 4.7e-05 1
UNIPROTKB|F8W1G6 - symbol:PCBP2 "Poly(rC)-binding protein... 99 4.8e-05 1
UNIPROTKB|C9IZV9 - symbol:PCBP4 "Poly(rC)-binding protein... 95 6.3e-05 1
RGD|1591989 - symbol:LOC367191 "similar to Poly(rC)-bindi... 95 6.3e-05 1
FB|FBgn0037549 - symbol:CG7878 species:7227 "Drosophila m... 106 7.2e-05 1
TAIR|locus:2161413 - symbol:AT5G46190 "AT5G46190" species... 105 8.3e-05 1
POMBASE|SPCC757.09c - symbol:rnc1 "RNA-binding protein th... 102 8.9e-05 1
UNIPROTKB|F8VTZ0 - symbol:PCBP2 "Poly(rC)-binding protein... 93 0.00010 1
UNIPROTKB|D4ACH3 - symbol:D4ACH3 "Uncharacterized protein... 99 0.00011 1
UNIPROTKB|B4DLC0 - symbol:PCBP2 "Poly(rC)-binding protein... 99 0.00012 1
UNIPROTKB|G3V0E8 - symbol:PCBP2 "Poly(RC) binding protein... 99 0.00013 1
UNIPROTKB|F8VZX2 - symbol:PCBP2 "Poly(rC)-binding protein... 99 0.00013 1
UNIPROTKB|B4DXP5 - symbol:PCBP2 "Poly(rC)-binding protein... 99 0.00013 1
UNIPROTKB|E2RCF9 - symbol:PCBP2 "Uncharacterized protein"... 99 0.00014 1
UNIPROTKB|Q3SYT9 - symbol:PCBP2 "Poly(RC) binding protein... 99 0.00015 1
UNIPROTKB|F1SFQ4 - symbol:PCBP2 "Uncharacterized protein"... 99 0.00016 1
MGI|MGI:108202 - symbol:Pcbp2 "poly(rC) binding protein 2... 99 0.00016 1
UNIPROTKB|Q15366 - symbol:PCBP2 "Poly(rC)-binding protein... 99 0.00016 1
RGD|1309626 - symbol:Pcbp2 "poly(rC) binding protein 2" s... 99 0.00016 1
UNIPROTKB|G8JLA5 - symbol:NOVA1 "RNA-binding protein Nova... 91 0.00017 1
UNIPROTKB|I3LRF8 - symbol:PCBP3 "Uncharacterized protein"... 95 0.00026 1
UNIPROTKB|Q5E9A3 - symbol:PCBP1 "Poly(rC)-binding protein... 97 0.00026 1
UNIPROTKB|J9P7Y9 - symbol:PCBP1 "Uncharacterized protein"... 97 0.00026 1
UNIPROTKB|Q15365 - symbol:PCBP1 "Poly(rC)-binding protein... 97 0.00026 1
UNIPROTKB|I3LEC2 - symbol:PCBP1 "Uncharacterized protein"... 97 0.00026 1
MGI|MGI:1345635 - symbol:Pcbp1 "poly(rC) binding protein ... 97 0.00026 1
RGD|1561319 - symbol:Pcbp1 "poly(rC) binding protein 1" s... 97 0.00026 1
ZFIN|ZDB-GENE-070424-78 - symbol:zgc:162999 "zgc:162999" ... 96 0.00033 1
WB|WBGene00003978 - symbol:pes-4 species:6239 "Caenorhabd... 97 0.00035 1
UNIPROTKB|F1NPL2 - symbol:PCBP3 "Uncharacterized protein"... 94 0.00046 1
UNIPROTKB|F1NPL4 - symbol:PCBP3 "Uncharacterized protein"... 94 0.00048 1
UNIPROTKB|D4A6P7 - symbol:Nova1 "RNA-binding protein Nova... 87 0.00049 1
UNIPROTKB|F1NPL3 - symbol:PCBP3 "Uncharacterized protein"... 94 0.00055 1
UNIPROTKB|F1M8T3 - symbol:F1M8T3 "Uncharacterized protein... 90 0.00059 1
UNIPROTKB|I3L2B5 - symbol:NOVA1 "RNA-binding protein Nova... 86 0.00060 1
UNIPROTKB|J3KQU3 - symbol:NOVA1 "RNA-binding protein Nova... 91 0.00077 1
TAIR|locus:2056951 - symbol:AT2G03110 "AT2G03110" species... 85 0.00080 1
UNIPROTKB|F1NP95 - symbol:NOVA1 "Uncharacterized protein"... 92 0.00087 1
UNIPROTKB|B7ZAG4 - symbol:TDRKH "cDNA, FLJ79178, highly s... 84 0.00093 1
UNIPROTKB|E9PKN8 - symbol:TDRKH "Tudor and KH domain-cont... 84 0.00093 1
UNIPROTKB|F8VYI3 - symbol:NOVA1 "RNA-binding protein Nova... 84 0.00093 1
TAIR|locus:2017612 - symbol:AT1G51580 "AT1G51580" species... 95 0.00093 1
UNIPROTKB|F8VWX1 - symbol:NOVA1 "RNA-binding protein Nova... 86 0.00095 1
>UNIPROTKB|Q5T6W2 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
GO:GO:0030529 EMBL:AL354733 HOGENOM:HOG000019764 HOVERGEN:HBG051916
InterPro:IPR012987 Pfam:PF08067 UniGene:Hs.522257 HGNC:HGNC:5044
ChiTaRS:HNRNPK IPI:IPI00910458 SMR:Q5T6W2 Ensembl:ENST00000457156
Uniprot:Q5T6W2
Length = 379
Score = 207 (77.9 bits), Expect = 3.8e-19, Sum P(2) = 3.8e-19
Identities = 41/78 (52%), Positives = 58/78 (74%)
Query: 11 FKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPERIL+I A
Sbjct: 33 FKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISA 92
Query: 71 ELENGLKVIEEVLPALDE 88
++E +++++++P L+E
Sbjct: 93 DIETIGEILKKIIPTLEE 110
Score = 102 (41.0 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 25/87 (28%), Positives = 47/87 (54%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-G 61
I L ++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP
Sbjct: 105 IPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHS 164
Query: 62 PERILTIFAELENGLKVIEEVLPALDE 88
+R++ I + + ++ I+ +L + E
Sbjct: 165 TDRVVLIGGKPDRVVECIKIILDLISE 191
Score = 45 (20.9 bits), Expect = 3.8e-19, Sum P(2) = 3.8e-19
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 121 IRLIVHQSQAGCXXXXXXXXXXELRD 146
+RL++HQS AG ELR+
Sbjct: 123 LRLLIHQSLAGGIIGVKGAKIKELRE 148
>UNIPROTKB|E1C453 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9031 "Gallus gallus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IEA] [GO:0001077 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding transcription factor activity involved in positive
regulation of transcription" evidence=IEA] [GO:0010988 "regulation
of low-density lipoprotein particle clearance" evidence=IEA]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=IEA] [GO:0048260
"positive regulation of receptor-mediated endocytosis"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0072369 "regulation of lipid transport by
positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 CTD:3190
GeneTree:ENSGT00550000074311 KO:K12886 OMA:KALRTDX
InterPro:IPR012987 Pfam:PF08067 EMBL:AADN02064910 EMBL:AADN02064911
IPI:IPI00684854 RefSeq:XP_003643054.1 Ensembl:ENSGALT00000020563
GeneID:427458 KEGG:gga:427458 Uniprot:E1C453
Length = 426
Score = 207 (77.9 bits), Expect = 8.2e-19, Sum P(2) = 8.2e-19
Identities = 41/78 (52%), Positives = 58/78 (74%)
Query: 11 FKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPERIL+I A
Sbjct: 30 FKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISA 89
Query: 71 ELENGLKVIEEVLPALDE 88
++E +++++++P L+E
Sbjct: 90 DIETIGEILKKIIPTLEE 107
Score = 102 (41.0 bits), Expect = 9.9e-05, P = 9.9e-05
Identities = 25/87 (28%), Positives = 47/87 (54%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-G 61
I L ++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP
Sbjct: 102 IPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHS 161
Query: 62 PERILTIFAELENGLKVIEEVLPALDE 88
+R++ I + + ++ I+ +L + E
Sbjct: 162 TDRVVLIGGKPDRVVECIKIILDLISE 188
Score = 97 (39.2 bits), Expect = 0.00034, P = 0.00034
Identities = 23/55 (41%), Positives = 36/55 (65%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD-CPGPE-RILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + + G E RI+TI
Sbjct: 347 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITI 400
Score = 45 (20.9 bits), Expect = 8.2e-19, Sum P(2) = 8.2e-19
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 121 IRLIVHQSQAGCXXXXXXXXXXELRD 146
+RL++HQS AG ELR+
Sbjct: 120 LRLLIHQSLAGGIIGVKGAKIKELRE 145
>UNIPROTKB|I3LQS0 [details] [associations]
symbol:HNRNPK "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072369 "regulation of lipid transport by positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0048260 "positive regulation of receptor-mediated
endocytosis" evidence=IEA] [GO:0045716 "positive regulation of
low-density lipoprotein particle receptor biosynthetic process"
evidence=IEA] [GO:0010988 "regulation of low-density lipoprotein
particle clearance" evidence=IEA] [GO:0001077 "RNA polymerase II
core promoter proximal region sequence-specific DNA binding
transcription factor activity involved in positive regulation of
transcription" evidence=IEA] [GO:0000978 "RNA polymerase II core
promoter proximal region sequence-specific DNA binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GO:GO:0000978 GO:GO:0001077 GO:GO:0000790
GO:GO:0048260 GO:GO:0071013 GO:GO:0045716 GO:GO:0010988
GeneTree:ENSGT00550000074311 OMA:KALRTDX GO:GO:0072369
InterPro:IPR012987 Pfam:PF08067 EMBL:FP312814
Ensembl:ENSSSCT00000025854 Uniprot:I3LQS0
Length = 444
Score = 207 (77.9 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 41/78 (52%), Positives = 58/78 (74%)
Query: 11 FKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPERIL+I A
Sbjct: 36 FKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISA 95
Query: 71 ELENGLKVIEEVLPALDE 88
++E +++++++P L+E
Sbjct: 96 DIETIGEILKKIIPTLEE 113
Score = 102 (41.0 bits), Expect = 0.00010, P = 0.00010
Identities = 24/82 (29%), Positives = 46/82 (56%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP +R++
Sbjct: 137 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPQSTDRVV 196
Query: 67 TIFAELENGLKVIEEVLPALDE 88
I + + ++ I+ +L + E
Sbjct: 197 LIGGKPDRVVECIKIILDLISE 218
Score = 97 (39.2 bits), Expect = 0.00036, P = 0.00036
Identities = 23/55 (41%), Positives = 36/55 (65%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD-CPGPE-RILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + + G E RI+TI
Sbjct: 365 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITI 418
Score = 45 (20.9 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 121 IRLIVHQSQAGCXXXXXXXXXXELRD 146
+RL++HQS AG ELR+
Sbjct: 150 LRLLIHQSLAGGIIGVKGAKIKELRE 175
>UNIPROTKB|P61978 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0007165 "signal transduction" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=IMP] [GO:0072369
"regulation of lipid transport by positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0048260 "positive regulation of receptor-mediated endocytosis"
evidence=IMP] [GO:0010988 "regulation of low-density lipoprotein
particle clearance" evidence=IMP] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IMP] [GO:0001077 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding transcription factor activity involved in positive
regulation of transcription" evidence=IMP] [GO:0003697
"single-stranded DNA binding" evidence=TAS] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0019048 GO:GO:0007165
GO:GO:0005654 Reactome:REACT_1675 GO:GO:0003723 GO:GO:0000978
GO:GO:0001077 GO:GO:0000790 GO:GO:0003697 EMBL:CH471089
GO:GO:0048260 GO:GO:0000398 GO:GO:0071013 EMBL:AL354733
GO:GO:0045716 GO:GO:0010988 CTD:3190 eggNOG:NOG285495
HOVERGEN:HBG051916 KO:K12886 OMA:KALRTDX OrthoDB:EOG49KFRD
GO:GO:0072369 InterPro:IPR012987 Pfam:PF08067 EMBL:S74678
EMBL:X72727 EMBL:AB209562 EMBL:BC000355 EMBL:BC014980
IPI:IPI00216049 IPI:IPI00216746 IPI:IPI00807545 PIR:S43363
RefSeq:NP_002131.2 RefSeq:NP_112552.1 RefSeq:NP_112553.1
UniGene:Hs.522257 PDB:1J5K PDB:1KHM PDB:1ZZI PDB:1ZZJ PDB:1ZZK
PDBsum:1J5K PDBsum:1KHM PDBsum:1ZZI PDBsum:1ZZJ PDBsum:1ZZK
ProteinModelPortal:P61978 SMR:P61978 DIP:DIP-31805N IntAct:P61978
MINT:MINT-225422 STRING:P61978 PhosphoSite:P61978 DMDM:48429103
SWISS-2DPAGE:P61978 PaxDb:P61978 PRIDE:P61978 DNASU:3190
Ensembl:ENST00000351839 Ensembl:ENST00000360384
Ensembl:ENST00000376263 Ensembl:ENST00000376264
Ensembl:ENST00000376268 Ensembl:ENST00000376281 GeneID:3190
KEGG:hsa:3190 UCSC:uc004ang.4 UCSC:uc004anh.4 GeneCards:GC09M086582
HGNC:HGNC:5044 HPA:CAB004435 HPA:CAB016225 HPA:HPA007644 MIM:600712
neXtProt:NX_P61978 PharmGKB:PA162391350 ChEMBL:CHEMBL3469
ChiTaRS:HNRNPK EvolutionaryTrace:P61978 GenomeRNAi:3190
NextBio:12686 PMAP-CutDB:P61978 ArrayExpress:P61978 Bgee:P61978
CleanEx:HS_HNRNPK Genevestigator:P61978 GermOnline:ENSG00000165119
Uniprot:P61978
Length = 463
Score = 207 (77.9 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 41/78 (52%), Positives = 58/78 (74%)
Query: 11 FKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPERIL+I A
Sbjct: 33 FKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISA 92
Query: 71 ELENGLKVIEEVLPALDE 88
++E +++++++P L+E
Sbjct: 93 DIETIGEILKKIIPTLEE 110
Score = 102 (41.0 bits), Expect = 0.00011, P = 0.00011
Identities = 24/82 (29%), Positives = 46/82 (56%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP +R++
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDE 88
I + + ++ I+ +L + E
Sbjct: 194 LIGGKPDRVVECIKIILDLISE 215
Score = 97 (39.2 bits), Expect = 0.00039, P = 0.00039
Identities = 23/55 (41%), Positives = 36/55 (65%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD-CPGPE-RILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + + G E RI+TI
Sbjct: 384 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITI 437
Score = 45 (20.9 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 121 IRLIVHQSQAGCXXXXXXXXXXELRD 146
+RL++HQS AG ELR+
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRE 172
>MGI|MGI:99894 [details] [associations]
symbol:Hnrnpk "heterogeneous nuclear ribonucleoprotein K"
species:10090 "Mus musculus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0000978 "RNA polymerase II core promoter proximal
region sequence-specific DNA binding" evidence=ISO] [GO:0001077
"RNA polymerase II core promoter proximal region sequence-specific
DNA binding transcription factor activity involved in positive
regulation of transcription" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010988
"regulation of low-density lipoprotein particle clearance"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0042981 "regulation of apoptotic process" evidence=IMP]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0048260 "positive regulation of
receptor-mediated endocytosis" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] [GO:0072369 "regulation of lipid
transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
MGI:MGI:99894 GO:GO:0005737 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0006397 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 CTD:3190 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOVERGEN:HBG051916 KO:K12886
OMA:KALRTDX InterPro:IPR012987 Pfam:PF08067 EMBL:L31961
EMBL:AK011428 EMBL:AK051313 EMBL:AK078777 EMBL:AK088462
EMBL:BC006694 IPI:IPI00224575 IPI:IPI00890005 IPI:IPI00990152
RefSeq:NP_079555.1 UniGene:Mm.142872 ProteinModelPortal:P61979
SMR:P61979 IntAct:P61979 STRING:P61979 PhosphoSite:P61979
REPRODUCTION-2DPAGE:IPI00223253 REPRODUCTION-2DPAGE:P61979
PaxDb:P61979 PRIDE:P61979 Ensembl:ENSMUST00000043269
Ensembl:ENSMUST00000116403 Ensembl:ENSMUST00000176207 GeneID:15387
KEGG:mmu:15387 UCSC:uc007qtw.1 UCSC:uc007qty.1 NextBio:288062
Bgee:P61979 Genevestigator:P61979 GermOnline:ENSMUSG00000063902
Uniprot:P61979
Length = 463
Score = 207 (77.9 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 41/78 (52%), Positives = 58/78 (74%)
Query: 11 FKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPERIL+I A
Sbjct: 33 FKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISA 92
Query: 71 ELENGLKVIEEVLPALDE 88
++E +++++++P L+E
Sbjct: 93 DIETIGEILKKIIPTLEE 110
Score = 102 (41.0 bits), Expect = 0.00011, P = 0.00011
Identities = 24/82 (29%), Positives = 46/82 (56%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP +R++
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDE 88
I + + ++ I+ +L + E
Sbjct: 194 LIGGKPDRVVECIKIILDLISE 215
Score = 97 (39.2 bits), Expect = 0.00039, P = 0.00039
Identities = 23/55 (41%), Positives = 36/55 (65%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD-CPGPE-RILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + + G E RI+TI
Sbjct: 384 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITI 437
Score = 45 (20.9 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 121 IRLIVHQSQAGCXXXXXXXXXXELRD 146
+RL++HQS AG ELR+
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRE 172
>RGD|71058 [details] [associations]
symbol:Hnrnpk "heterogeneous nuclear ribonucleoprotein K"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=IEA;ISO] [GO:0000978 "RNA polymerase II core promoter
proximal region sequence-specific DNA binding" evidence=IEA;ISO]
[GO:0001077 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding transcription factor activity involved
in positive regulation of transcription" evidence=IEA;ISO]
[GO:0003697 "single-stranded DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010988 "regulation of low-density
lipoprotein particle clearance" evidence=IEA;ISO] [GO:0042981
"regulation of apoptotic process" evidence=ISO] [GO:0045716
"positive regulation of low-density lipoprotein particle receptor
biosynthetic process" evidence=IEA;ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048260 "positive regulation of receptor-mediated
endocytosis" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072369 "regulation of lipid
transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 RGD:71058 GO:GO:0005737 GO:GO:0005654
GO:GO:0006355 GO:GO:0008380 GO:GO:0006397 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0003697 CTD:3190 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 HOVERGEN:HBG051916
KO:K12886 InterPro:IPR012987 Pfam:PF08067 EMBL:D17711
IPI:IPI00780608 PIR:S41495 RefSeq:NP_476482.1 UniGene:Rn.11854
ProteinModelPortal:P61980 SMR:P61980 IntAct:P61980 MINT:MINT-1505757
STRING:P61980 PhosphoSite:P61980 World-2DPAGE:0004:P61980
PRIDE:P61980 Ensembl:ENSRNOT00000025916 GeneID:117282
KEGG:rno:117282 UCSC:RGD:71058 InParanoid:P61980 NextBio:620239
ArrayExpress:P61980 Genevestigator:P61980
GermOnline:ENSRNOG00000019113 Uniprot:P61980
Length = 463
Score = 207 (77.9 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 41/78 (52%), Positives = 58/78 (74%)
Query: 11 FKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPERIL+I A
Sbjct: 33 FKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISA 92
Query: 71 ELENGLKVIEEVLPALDE 88
++E +++++++P L+E
Sbjct: 93 DIETIGEILKKIIPTLEE 110
Score = 102 (41.0 bits), Expect = 0.00011, P = 0.00011
Identities = 24/82 (29%), Positives = 46/82 (56%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP +R++
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDE 88
I + + ++ I+ +L + E
Sbjct: 194 LIGGKPDRVVECIKIILDLISE 215
Score = 97 (39.2 bits), Expect = 0.00039, P = 0.00039
Identities = 23/55 (41%), Positives = 36/55 (65%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD-CPGPE-RILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + + G E RI+TI
Sbjct: 384 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITI 437
Score = 45 (20.9 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 121 IRLIVHQSQAGCXXXXXXXXXXELRD 146
+RL++HQS AG ELR+
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRE 172
>UNIPROTKB|Q3T0D0 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0072369 "regulation of
lipid transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048260 "positive regulation of
receptor-mediated endocytosis" evidence=IEA] [GO:0045716 "positive
regulation of low-density lipoprotein particle receptor
biosynthetic process" evidence=IEA] [GO:0010988 "regulation of
low-density lipoprotein particle clearance" evidence=IEA]
[GO:0001077 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding transcription factor activity
involved in positive regulation of transcription" evidence=IEA]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0006397 GO:GO:0003723
GO:GO:0000978 GO:GO:0001077 GO:GO:0000790 GO:GO:0048260
GO:GO:0071013 GO:GO:0045716 GO:GO:0010988 EMBL:BC102450
IPI:IPI00696554 RefSeq:NP_001029734.1 UniGene:Bt.47688
ProteinModelPortal:Q3T0D0 SMR:Q3T0D0 STRING:Q3T0D0 PRIDE:Q3T0D0
Ensembl:ENSBTAT00000028162 GeneID:528135 KEGG:bta:528135 CTD:3190
eggNOG:NOG285495 GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764
HOVERGEN:HBG051916 InParanoid:Q3T0D0 KO:K12886 OMA:KALRTDX
OrthoDB:EOG49KFRD NextBio:20874747 GO:GO:0072369 InterPro:IPR012987
Pfam:PF08067 Uniprot:Q3T0D0
Length = 464
Score = 207 (77.9 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 41/78 (52%), Positives = 58/78 (74%)
Query: 11 FKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPERIL+I A
Sbjct: 33 FKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISA 92
Query: 71 ELENGLKVIEEVLPALDE 88
++E +++++++P L+E
Sbjct: 93 DIETIGEILKKIIPTLEE 110
Score = 102 (41.0 bits), Expect = 0.00011, P = 0.00011
Identities = 24/82 (29%), Positives = 46/82 (56%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP +R++
Sbjct: 134 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPQSTDRVV 193
Query: 67 TIFAELENGLKVIEEVLPALDE 88
I + + ++ I+ +L + E
Sbjct: 194 LIGGKPDRVVECIKIILDLISE 215
Score = 97 (39.2 bits), Expect = 0.00039, P = 0.00039
Identities = 23/55 (41%), Positives = 36/55 (65%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD-CPGPE-RILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + + G E RI+TI
Sbjct: 384 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITI 437
Score = 45 (20.9 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 121 IRLIVHQSQAGCXXXXXXXXXXELRD 146
+RL++HQS AG ELR+
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRE 172
>UNIPROTKB|H9L0I0 [details] [associations]
symbol:HNRPK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 InterPro:IPR012987
Pfam:PF08067 EMBL:AADN02078253 EMBL:AADN02078254 EMBL:AADN02078255
Ensembl:ENSGALT00000023210 Uniprot:H9L0I0
Length = 426
Score = 204 (76.9 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 41/78 (52%), Positives = 57/78 (73%)
Query: 11 FKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPERIL+I A
Sbjct: 30 FKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISA 89
Query: 71 ELENGLKVIEEVLPALDE 88
+ E +++++++P L+E
Sbjct: 90 DTETIGEILKKIIPTLEE 107
Score = 99 (39.9 bits), Expect = 0.00021, P = 0.00021
Identities = 25/87 (28%), Positives = 47/87 (54%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-G 61
I L ++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP
Sbjct: 102 IPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHS 161
Query: 62 PERILTIFAELENGLKVIEEVLPALDE 88
+R++ I + + ++ I+ +L + E
Sbjct: 162 TDRVVLIGGKPDRVVECIKIILDLIFE 188
Score = 97 (39.2 bits), Expect = 0.00034, P = 0.00034
Identities = 23/55 (41%), Positives = 36/55 (65%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD-CPGPE-RILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + + G E RI+TI
Sbjct: 348 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITI 401
Score = 45 (20.9 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 121 IRLIVHQSQAGCXXXXXXXXXXELRD 146
+RL++HQS AG ELR+
Sbjct: 120 LRLLIHQSLAGGIIGVKGAKIKELRE 145
>UNIPROTKB|Q5ZIQ3 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005737 GO:GO:0005654
GO:GO:0006355 GO:GO:0008380 GO:GO:0003677 GO:GO:0006397
GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:NOG285495
HOGENOM:HOG000019764 HOVERGEN:HBG051916 KO:K12886 OrthoDB:EOG49KFRD
InterPro:IPR012987 Pfam:PF08067 EMBL:AJ720731 IPI:IPI00593692
RefSeq:NP_001026556.1 UniGene:Gga.28787 HSSP:P61978
ProteinModelPortal:Q5ZIQ3 SMR:Q5ZIQ3 STRING:Q5ZIQ3 PRIDE:Q5ZIQ3
GeneID:426516 KEGG:gga:426516 CTD:380255 InParanoid:Q5ZIQ3
NextBio:20828064 Uniprot:Q5ZIQ3
Length = 427
Score = 204 (76.9 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 41/78 (52%), Positives = 57/78 (73%)
Query: 11 FKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPERIL+I A
Sbjct: 30 FKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISA 89
Query: 71 ELENGLKVIEEVLPALDE 88
+ E +++++++P L+E
Sbjct: 90 DTETIGEILKKIIPTLEE 107
Score = 102 (41.0 bits), Expect = 9.9e-05, P = 9.9e-05
Identities = 25/87 (28%), Positives = 47/87 (54%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-G 61
I L ++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP
Sbjct: 102 IPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHS 161
Query: 62 PERILTIFAELENGLKVIEEVLPALDE 88
+R++ I + + ++ I+ +L + E
Sbjct: 162 TDRVVLIGGKPDRVVECIKIILDLISE 188
Score = 97 (39.2 bits), Expect = 0.00034, P = 0.00034
Identities = 23/55 (41%), Positives = 36/55 (65%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD-CPGPE-RILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + + G E RI+TI
Sbjct: 348 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITI 401
Score = 45 (20.9 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 121 IRLIVHQSQAGCXXXXXXXXXXELRD 146
+RL++HQS AG ELR+
Sbjct: 120 LRLLIHQSLAGGIIGVKGAKIKELRE 145
>UNIPROTKB|H9L242 [details] [associations]
symbol:HNRPK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 InterPro:IPR012987
Pfam:PF08067 OMA:INPWANG EMBL:AADN02078253 EMBL:AADN02078254
EMBL:AADN02078255 Ensembl:ENSGALT00000035757 Uniprot:H9L242
Length = 427
Score = 204 (76.9 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 41/78 (52%), Positives = 57/78 (73%)
Query: 11 FKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPERIL+I A
Sbjct: 30 FKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISA 89
Query: 71 ELENGLKVIEEVLPALDE 88
+ E +++++++P L+E
Sbjct: 90 DTETIGEILKKIIPTLEE 107
Score = 99 (39.9 bits), Expect = 0.00021, P = 0.00021
Identities = 25/87 (28%), Positives = 47/87 (54%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-G 61
I L ++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP
Sbjct: 102 IPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHS 161
Query: 62 PERILTIFAELENGLKVIEEVLPALDE 88
+R++ I + + ++ I+ +L + E
Sbjct: 162 TDRVVLIGGKPDRVVECIKIILDLIFE 188
Score = 97 (39.2 bits), Expect = 0.00034, P = 0.00034
Identities = 23/55 (41%), Positives = 36/55 (65%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD-CPGPE-RILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + + G E RI+TI
Sbjct: 348 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITI 401
Score = 45 (20.9 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 121 IRLIVHQSQAGCXXXXXXXXXXELRD 146
+RL++HQS AG ELR+
Sbjct: 120 LRLLIHQSLAGGIIGVKGAKIKELRE 145
>UNIPROTKB|E2RA50 [details] [associations]
symbol:E2RA50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
OMA:KALRTDX InterPro:IPR012987 Pfam:PF08067 EMBL:AAEX03000514
Ensembl:ENSCAFT00000002165 NextBio:20851993 Uniprot:E2RA50
Length = 439
Score = 207 (77.9 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
Identities = 41/78 (52%), Positives = 58/78 (74%)
Query: 11 FKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPERIL+I A
Sbjct: 33 FKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISA 92
Query: 71 ELENGLKVIEEVLPALDE 88
++E +++++++P L+E
Sbjct: 93 DIETIGEILKKIIPTLEE 110
Score = 97 (39.2 bits), Expect = 0.00036, P = 0.00036
Identities = 23/55 (41%), Positives = 36/55 (65%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD-CPGPE-RILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + + G E RI+TI
Sbjct: 360 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITI 413
Score = 93 (37.8 bits), Expect = 0.00096, P = 0.00096
Identities = 23/87 (26%), Positives = 46/87 (52%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-G 61
I L ++ ++G D ELRLLI +AG +IG G+ I + + + ++ + CP
Sbjct: 105 IPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKKFGGNTQTTIKLFQECCPHS 164
Query: 62 PERILTIFAELENGLKVIEEVLPALDE 88
+R++ I + + ++ I+ +L + E
Sbjct: 165 TDRVVLIGGKPDRVVECIKIILDLISE 191
Score = 41 (19.5 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 121 IRLIVHQSQAG 131
+RL++HQS AG
Sbjct: 123 LRLLIHQSLAG 133
>ZFIN|ZDB-GENE-040426-1926 [details] [associations]
symbol:hnrnpk "heterogeneous nuclear
ribonucleoprotein K" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-040426-1926 GO:GO:0003723 CTD:3190
GeneTree:ENSGT00550000074311 InterPro:IPR012987 Pfam:PF08067
EMBL:CR376792 EMBL:CU682767 IPI:IPI00865147 RefSeq:NP_998159.2
UniGene:Dr.106469 UniGene:Dr.122250 Ensembl:ENSDART00000097919
GeneID:406267 KEGG:dre:406267 NextBio:20817900 ArrayExpress:F1QWB4
Bgee:F1QWB4 Uniprot:F1QWB4
Length = 429
Score = 196 (74.1 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 37/78 (47%), Positives = 56/78 (71%)
Query: 11 FKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
+KR R VELR+L+ S+ AG+VIGKGG NI LR D+ A+V+VPD GPERIL++ A
Sbjct: 33 YKRSRNSDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNATVSVPDSSGPERILSVSA 92
Query: 71 ELENGLKVIEEVLPALDE 88
++ +++ +++P L+E
Sbjct: 93 DIPTVAEILLKIIPTLEE 110
Score = 100 (40.3 bits), Expect = 0.00016, P = 0.00016
Identities = 26/87 (29%), Positives = 47/87 (54%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-G 61
I L ++ +G D ELRLLI +AGS+IG G+ I LR+ + ++ + CP
Sbjct: 105 IPTLEEYQHHKGVDFDCELRLLIHQSLAGSIIGLKGAKIKELRDSTQTTIKLFQECCPQS 164
Query: 62 PERILTIFAELENGLKVIEEVLPALDE 88
+R++ + + E ++ I+ +L + E
Sbjct: 165 TDRVVLVGGKAERVVQCIKTMLELIVE 191
Score = 52 (23.4 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 121 IRLIVHQSQAGCXXXXXXXXXXELRDT 147
+RL++HQS AG ELRD+
Sbjct: 123 LRLLIHQSLAGSIIGLKGAKIKELRDS 149
>UNIPROTKB|E2RJ54 [details] [associations]
symbol:E2RJ54 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 OMA:INPWANG EMBL:AAEX03026697
Ensembl:ENSCAFT00000027729 NextBio:20855871 Uniprot:E2RJ54
Length = 439
Score = 202 (76.2 bits), Expect = 3.5e-18, Sum P(2) = 3.5e-18
Identities = 40/78 (51%), Positives = 57/78 (73%)
Query: 11 FKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
FKR R VELR+L+ S+ AG+VIGKGG NI L D+ ASV+VPD GPERIL+I A
Sbjct: 33 FKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALHTDYNASVSVPDSSGPERILSISA 92
Query: 71 ELENGLKVIEEVLPALDE 88
++E +++++++P L+E
Sbjct: 93 DIETIGEILKKIIPTLEE 110
Score = 108 (43.1 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 26/87 (29%), Positives = 48/87 (55%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CPGP 62
I L ++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP P
Sbjct: 105 IPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHP 164
Query: 63 -ERILTIFAELENGLKVIEEVLPALDE 88
+R++ I + + ++ I+ +L + E
Sbjct: 165 TDRVVLIGGKPDRVVECIKIILDLISE 191
Score = 45 (20.9 bits), Expect = 3.5e-18, Sum P(2) = 3.5e-18
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 121 IRLIVHQSQAGCXXXXXXXXXXELRD 146
+RL++HQS AG ELR+
Sbjct: 123 LRLLIHQSLAGGIIGVKGAKIKELRE 148
>ZFIN|ZDB-GENE-040426-1923 [details] [associations]
symbol:hnrpkl "heterogeneous nuclear
ribonucleoprotein K, like" species:7955 "Danio rerio" [GO:0003723
"RNA binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-040426-1923 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG051916 InterPro:IPR012987 Pfam:PF08067 EMBL:BC096867
IPI:IPI00493887 UniGene:Dr.47275 ProteinModelPortal:Q4V9J6
SMR:Q4V9J6 STRING:Q4V9J6 InParanoid:Q4V9J6 NextBio:20817897
ArrayExpress:Q4V9J6 Uniprot:Q4V9J6
Length = 431
Score = 197 (74.4 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 39/78 (50%), Positives = 57/78 (73%)
Query: 11 FKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPERIL++ A
Sbjct: 34 FKRSRNTDEMVELRVLLRSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSVSA 93
Query: 71 ELENGLKVIEEVLPALDE 88
+++ +++ +++P L+E
Sbjct: 94 DIDTIGEILLKIIPTLEE 111
Score = 98 (39.6 bits), Expect = 0.00027, P = 0.00027
Identities = 25/87 (28%), Positives = 46/87 (52%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-G 61
I L ++ + G D ELRLLI +AG +IG G+ I LR + + ++ + CP
Sbjct: 106 IPTLEEYQHYSGTDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHS 165
Query: 62 PERILTIFAELENGLKVIEEVLPALDE 88
+R++ + + E ++ I+ +L + E
Sbjct: 166 TDRVVLVGGKPERVVECIKVILELIAE 192
Score = 97 (39.2 bits), Expect = 0.00035, P = 0.00035
Identities = 23/55 (41%), Positives = 36/55 (65%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD-CPGPE-RILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + + G E RI+TI
Sbjct: 352 GGPV-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITI 405
Score = 45 (20.9 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 121 IRLIVHQSQAGCXXXXXXXXXXELRD 146
+RL++HQS AG ELR+
Sbjct: 124 LRLLIHQSLAGGIIGVKGAKIKELRE 149
>UNIPROTKB|J9P8J3 [details] [associations]
symbol:J9P8J3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 EMBL:AAEX03000514
Ensembl:ENSCAFT00000047704 Uniprot:J9P8J3
Length = 399
Score = 207 (77.9 bits), Expect = 3.0e-16, P = 3.0e-16
Identities = 41/78 (52%), Positives = 58/78 (74%)
Query: 11 FKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
FKR R VELR+L+ S+ AG+VIGKGG NI LR D+ ASV+VPD GPERIL+I A
Sbjct: 7 FKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISA 66
Query: 71 ELENGLKVIEEVLPALDE 88
++E +++++++P L+E
Sbjct: 67 DIETIGEILKKIIPTLEE 84
Score = 97 (39.2 bits), Expect = 0.00031, P = 0.00031
Identities = 23/55 (41%), Positives = 36/55 (65%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD-CPGPE-RILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + + G E RI+TI
Sbjct: 320 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITI 373
>FB|FBgn0015907 [details] [associations]
symbol:bl "bancal" species:7227 "Drosophila melanogaster"
[GO:0030529 "ribonucleoprotein complex" evidence=ISS] [GO:0003729
"mRNA binding" evidence=NAS;TAS] [GO:0005634 "nucleus"
evidence=IC;IDA;TAS] [GO:0035062 "omega speckle" evidence=IDA]
[GO:0000785 "chromatin" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=TAS]
[GO:0045165 "cell fate commitment" evidence=TAS] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0007446 "imaginal disc growth"
evidence=TAS] [GO:0008134 "transcription factor binding"
evidence=TAS] [GO:0035107 "appendage morphogenesis" evidence=TAS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005737
GO:GO:0008283 GO:GO:0003729 GO:GO:0000785 GO:GO:0030529
GO:GO:0008134 GO:GO:0045165 GO:GO:0000381 GO:GO:0007446 HSSP:P61978
GO:GO:0035062 FlyBase:FBgn0015907 ChiTaRS:bl GO:GO:0035107
EMBL:AF275629 ProteinModelPortal:Q7KHL0 SMR:Q7KHL0 STRING:Q7KHL0
PRIDE:Q7KHL0 InParanoid:Q7KHL0 ArrayExpress:Q7KHL0 Bgee:Q7KHL0
Uniprot:Q7KHL0
Length = 508
Score = 172 (65.6 bits), Expect = 4.4e-16, Sum P(2) = 4.4e-16
Identities = 33/74 (44%), Positives = 53/74 (71%)
Query: 15 RGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELEN 74
R ++ +R+LIPS +AG+VIGKGG +I ++R +KA+V+V D GPER + I A++E+
Sbjct: 17 RNRRSEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDSQGPERTIQISADIES 76
Query: 75 GLKVIEEVLPALDE 88
L++I E+L +E
Sbjct: 77 TLEIITEMLKYFEE 90
Score = 104 (41.7 bits), Expect = 7.7e-05, P = 7.7e-05
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 18 PNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTI 68
PN+ ++ IP +AG++IGKGG I R+RN+ A +T+ D P P +RI+TI
Sbjct: 419 PNN-STQVTIPKELAGAIIGKGGGRIRRIRNESSAYITI-DEPLPNSNDRIITI 470
Score = 59 (25.8 bits), Expect = 4.4e-16, Sum P(2) = 4.4e-16
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 121 IRLIVHQSQAGCXXXXXXXXXXELRD 146
+RL++HQS AGC E+RD
Sbjct: 97 VRLLIHQSLAGCVIGKGGQKIKEIRD 122
>WB|WBGene00017816 [details] [associations]
symbol:F26B1.2b species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0007126 "meiosis" evidence=IMP] [GO:0045132 "meiotic chromosome
segregation" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0009792
GO:GO:0006974 GO:GO:0003723 GO:GO:0045132 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 KO:K12886
HSSP:P61978 EMBL:FO080500 OMA:INPWANG PIR:T30168 RefSeq:NP_740869.1
ProteinModelPortal:P91277 SMR:P91277 DIP:DIP-27318N IntAct:P91277
MINT:MINT-1054372 STRING:P91277 PaxDb:P91277 PRIDE:P91277
EnsemblMetazoa:F26B1.2a GeneID:172330 KEGG:cel:CELE_F26B1.2
UCSC:F26B1.2c.3 CTD:172330 WormBase:F26B1.2a InParanoid:P91277
NextBio:875055 ArrayExpress:P91277 Uniprot:P91277
Length = 397
Score = 173 (66.0 bits), Expect = 8.3e-16, Sum P(2) = 8.3e-16
Identities = 33/67 (49%), Positives = 49/67 (73%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEE 81
E+RLL+ S+ AG++IGKGG NI RLR +F A V VPD PER+ T+ A+ + L ++++
Sbjct: 51 EVRLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPDSNTPERVCTVTADEKTVLNILKD 110
Query: 82 VLPALDE 88
VLP L++
Sbjct: 111 VLPRLED 117
Score = 110 (43.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG-PERILTI 68
GGP ++ IPS + G++IG+GG IAR+R + A +T+ G PERI+TI
Sbjct: 313 GGPVTTA-QVTIPSDLGGTIIGRGGERIARIRQESGAQITLEQSNGQPERIITI 365
Score = 107 (42.7 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 28/71 (39%), Positives = 41/71 (57%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDC-PGP-ERILTIFAELENGLKV 78
E+R+L+ AG++IG+ GS I LR A + + C PG +R+L E +N L +
Sbjct: 126 EVRMLVHQSHAGALIGRNGSKIKELREKCSARLKIFTGCAPGSTDRVLITSGEQKNVLGI 185
Query: 79 IEEVLPALDEI 89
IEEV+ L EI
Sbjct: 186 IEEVMKELKEI 196
Score = 51 (23.0 bits), Expect = 8.3e-16, Sum P(2) = 8.3e-16
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 121 IRLIVHQSQAGCXXXXXXXXXXELRDTFDA 150
+R++VHQS AG ELR+ A
Sbjct: 127 VRMLVHQSHAGALIGRNGSKIKELREKCSA 156
>UNIPROTKB|P91277 [details] [associations]
symbol:F26B1.2 "Protein F26B1.2, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0009792 GO:GO:0006974
GO:GO:0003723 GO:GO:0045132 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 KO:K12886
HSSP:P61978 EMBL:FO080500 OMA:INPWANG PIR:T30168 RefSeq:NP_740869.1
ProteinModelPortal:P91277 SMR:P91277 DIP:DIP-27318N IntAct:P91277
MINT:MINT-1054372 STRING:P91277 PaxDb:P91277 PRIDE:P91277
EnsemblMetazoa:F26B1.2a GeneID:172330 KEGG:cel:CELE_F26B1.2
UCSC:F26B1.2c.3 CTD:172330 WormBase:F26B1.2a InParanoid:P91277
NextBio:875055 ArrayExpress:P91277 Uniprot:P91277
Length = 397
Score = 173 (66.0 bits), Expect = 8.3e-16, Sum P(2) = 8.3e-16
Identities = 33/67 (49%), Positives = 49/67 (73%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEE 81
E+RLL+ S+ AG++IGKGG NI RLR +F A V VPD PER+ T+ A+ + L ++++
Sbjct: 51 EVRLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPDSNTPERVCTVTADEKTVLNILKD 110
Query: 82 VLPALDE 88
VLP L++
Sbjct: 111 VLPRLED 117
Score = 110 (43.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG-PERILTI 68
GGP ++ IPS + G++IG+GG IAR+R + A +T+ G PERI+TI
Sbjct: 313 GGPVTTA-QVTIPSDLGGTIIGRGGERIARIRQESGAQITLEQSNGQPERIITI 365
Score = 107 (42.7 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 28/71 (39%), Positives = 41/71 (57%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV-PDC-PGP-ERILTIFAELENGLKV 78
E+R+L+ AG++IG+ GS I LR A + + C PG +R+L E +N L +
Sbjct: 126 EVRMLVHQSHAGALIGRNGSKIKELREKCSARLKIFTGCAPGSTDRVLITSGEQKNVLGI 185
Query: 79 IEEVLPALDEI 89
IEEV+ L EI
Sbjct: 186 IEEVMKELKEI 196
Score = 51 (23.0 bits), Expect = 8.3e-16, Sum P(2) = 8.3e-16
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 121 IRLIVHQSQAGCXXXXXXXXXXELRDTFDA 150
+R++VHQS AG ELR+ A
Sbjct: 127 VRMLVHQSHAGALIGRNGSKIKELREKCSA 156
>UNIPROTKB|F1LXN9 [details] [associations]
symbol:F1LXN9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 IPI:IPI00777906
Ensembl:ENSRNOT00000017403 Uniprot:F1LXN9
Length = 376
Score = 167 (63.8 bits), Expect = 6.6e-12, P = 6.6e-12
Identities = 36/79 (45%), Positives = 53/79 (67%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIF 69
NFKR R VE R+L+ S AG+VIGK NI LR D+ AS++VPD GPE IL+I
Sbjct: 6 NFKRSRNTDEMVESRILLQSENAGAVIGK---NIKALRTDYSASISVPDSSGPEHILSIG 62
Query: 70 AELENGLKVIEEVLPALDE 88
A+++ +++ +++P L+E
Sbjct: 63 ADIKTIGEILRKIVPTLEE 81
>UNIPROTKB|Q5T6W5 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
GO:GO:0030529 EMBL:AL354733 HOGENOM:HOG000019764 HOVERGEN:HBG051916
InterPro:IPR012987 Pfam:PF08067 UniGene:Hs.522257 HGNC:HGNC:5044
ChiTaRS:HNRNPK IPI:IPI00514561 SMR:Q5T6W5 MINT:MINT-1445469
Ensembl:ENST00000435158 Uniprot:Q5T6W5
Length = 428
Score = 139 (54.0 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 33/78 (42%), Positives = 49/78 (62%)
Query: 11 FKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
FKR R VELR+L+ S+ NI LR D+ ASV+VPD GPERIL+I A
Sbjct: 33 FKRSRNTDEMVELRILLQSK-----------NIKALRTDYNASVSVPDSSGPERILSISA 81
Query: 71 ELENGLKVIEEVLPALDE 88
++E +++++++P L+E
Sbjct: 82 DIETIGEILKKIIPTLEE 99
Score = 102 (41.0 bits), Expect = 9.9e-05, P = 9.9e-05
Identities = 25/87 (28%), Positives = 47/87 (54%)
Query: 5 IQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-G 61
I L ++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP
Sbjct: 94 IPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHS 153
Query: 62 PERILTIFAELENGLKVIEEVLPALDE 88
+R++ I + + ++ I+ +L + E
Sbjct: 154 TDRVVLIGGKPDRVVECIKIILDLISE 180
Score = 97 (39.2 bits), Expect = 0.00034, P = 0.00034
Identities = 23/55 (41%), Positives = 36/55 (65%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD-CPGPE-RILTI 68
GGP + ++ IP +AGS+IGKGG I ++R++ AS+ + + G E RI+TI
Sbjct: 349 GGPI-ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITI 402
Score = 45 (20.9 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 121 IRLIVHQSQAGCXXXXXXXXXXELRD 146
+RL++HQS AG ELR+
Sbjct: 112 LRLLIHQSLAGGIIGVKGAKIKELRE 137
>UNIPROTKB|C9JZY3 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00984041 ProteinModelPortal:C9JZY3 SMR:C9JZY3
STRING:C9JZY3 Ensembl:ENST00000468324 ArrayExpress:C9JZY3
Bgee:C9JZY3 Uniprot:C9JZY3
Length = 168
Score = 98 (39.6 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
LR+L+ + GS+IGK G + R+R A +T+ + PERI TI + +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMI 79
Query: 83 LPALDE 88
LDE
Sbjct: 80 AFKLDE 85
Score = 40 (19.1 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 121 IRLIVHQSQAGCXXXXXXXXXXELRDTFDA 150
+RL++ SQ G E+R+T A
Sbjct: 104 LRLVIPASQCGSLIGKAGTKIKEIRETTGA 133
>UNIPROTKB|Q5T6W1 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GO:GO:0030529 EMBL:AL354733
HOGENOM:HOG000019764 HOVERGEN:HBG051916 UniGene:Hs.522257
HGNC:HGNC:5044 ChiTaRS:HNRNPK IPI:IPI00640296 SMR:Q5T6W1
Ensembl:ENST00000376256 Uniprot:Q5T6W1
Length = 306
Score = 102 (41.0 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 24/82 (29%), Positives = 46/82 (56%)
Query: 10 NFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD--CP-GPERIL 66
N++ ++G D ELRLLI +AG +IG G+ I LR + + ++ + CP +R++
Sbjct: 65 NYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVV 124
Query: 67 TIFAELENGLKVIEEVLPALDE 88
I + + ++ I+ +L + E
Sbjct: 125 LIGGKPDRVVECIKIILDLISE 146
Score = 101 (40.6 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 18/39 (46%), Positives = 31/39 (79%)
Query: 50 FKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDE 88
+ ASV+VPD GPERIL+I A++E +++++++P L+E
Sbjct: 3 YNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEE 41
Score = 45 (20.9 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 121 IRLIVHQSQAGCXXXXXXXXXXELRD 146
+RL++HQS AG ELR+
Sbjct: 78 LRLLIHQSLAGGIIGVKGAKIKELRE 103
>TAIR|locus:2150956 [details] [associations]
symbol:AT5G15270 "AT5G15270" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003723 eggNOG:NOG315872 KO:K13162
EMBL:AK228673 EMBL:AK229313 IPI:IPI00527841 RefSeq:NP_197031.3
RefSeq:NP_851040.1 UniGene:At.31826 ProteinModelPortal:Q0WNX3
SMR:Q0WNX3 PaxDb:Q0WNX3 PRIDE:Q0WNX3 EnsemblPlants:AT5G15270.1
EnsemblPlants:AT5G15270.2 GeneID:831379 KEGG:ath:AT5G15270
TAIR:At5g15270 HOGENOM:HOG000240086 InParanoid:Q0WNX3 OMA:IYSPSDE
PhylomeDB:Q0WNX3 ProtClustDB:CLSN2679973 Genevestigator:Q0WNX3
Uniprot:Q0WNX3
Length = 548
Score = 109 (43.4 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 28/76 (36%), Positives = 45/76 (59%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PG-PERILTIFAELE--N 74
+D R L P + GSVIG+GG + +LRND ++ + + + PG ER++TI++ + N
Sbjct: 48 DDTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETN 107
Query: 75 GLKVIEEVL-PALDEI 89
E+VL PA D +
Sbjct: 108 AFGDGEKVLSPAQDAL 123
Score = 36 (17.7 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 122 RLIVHQSQAGCXXXXXXXXXXELR 145
RL+V S+ GC E+R
Sbjct: 373 RLLVPSSRIGCILGKGGAIITEMR 396
>UNIPROTKB|C9J0A4 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00385206 ProteinModelPortal:C9J0A4 SMR:C9J0A4
STRING:C9J0A4 Ensembl:ENST00000471622 ArrayExpress:C9J0A4
Bgee:C9J0A4 Uniprot:C9J0A4
Length = 323
Score = 98 (39.6 bits), Expect = 8.8e-07, Sum P(2) = 8.8e-07
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
LR+L+ + GS+IGK G + R+R A +T+ + PERI TI + +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMI 79
Query: 83 LPALDE 88
LDE
Sbjct: 80 AFKLDE 85
Score = 40 (19.1 bits), Expect = 8.8e-07, Sum P(2) = 8.8e-07
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 121 IRLIVHQSQAGCXXXXXXXXXXELRDTFDA 150
+RL++ SQ G E+R+T A
Sbjct: 104 LRLVIPASQCGSLIGKAGTKIKEIRETTGA 133
>UNIPROTKB|Q0VCU0 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0003677 GO:GO:0003723
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K13162 EMBL:BC120009
IPI:IPI00707807 RefSeq:NP_001068751.1 UniGene:Bt.7587
ProteinModelPortal:Q0VCU0 SMR:Q0VCU0 PRIDE:Q0VCU0
Ensembl:ENSBTAT00000024779 GeneID:506889 KEGG:bta:506889 CTD:57060
InParanoid:Q0VCU0 OMA:MSSSDAG OrthoDB:EOG48D0VR NextBio:20867786
Uniprot:Q0VCU0
Length = 403
Score = 98 (39.6 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
LR+L+ + GS+IGK G + R+R A +T+ + PERI TI + +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMI 79
Query: 83 LPALDE 88
LDE
Sbjct: 80 AFKLDE 85
Score = 40 (19.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 121 IRLIVHQSQAGCXXXXXXXXXXELRDTFDA 150
+RL++ SQ G E+R+T A
Sbjct: 104 LRLVIPASQCGSLIGKAGTKIKEIRETTGA 133
>UNIPROTKB|E2RG64 [details] [associations]
symbol:PCBP4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 KO:K13162
CTD:57060 OMA:MSSSDAG EMBL:AAEX03012201 RefSeq:XP_849987.1
Ensembl:ENSCAFT00000015946 GeneID:476603 KEGG:cfa:476603
NextBio:20852230 Uniprot:E2RG64
Length = 403
Score = 98 (39.6 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
LR+L+ + GS+IGK G + R+R A +T+ + PERI TI + +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMI 79
Query: 83 LPALDE 88
LDE
Sbjct: 80 AFKLDE 85
Score = 40 (19.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 121 IRLIVHQSQAGCXXXXXXXXXXELRDTFDA 150
+RL++ SQ G E+R+T A
Sbjct: 104 LRLVIPASQCGSLIGKAGTKIKEIRETTGA 133
>UNIPROTKB|P57723 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0003677 GO:GO:0003723
GO:GO:0030529 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:57060 OMA:MSSSDAG
OrthoDB:EOG48D0VR EMBL:AF176330 EMBL:AK023993 EMBL:BC003008
EMBL:BC004153 EMBL:BC017098 IPI:IPI00027973 IPI:IPI00386254
RefSeq:NP_001167571.1 RefSeq:NP_065151.2 RefSeq:NP_127501.1
RefSeq:NP_127503.1 UniGene:Hs.20930 ProteinModelPortal:P57723
SMR:P57723 IntAct:P57723 MINT:MINT-2873350 STRING:P57723
PhosphoSite:P57723 DMDM:12230429 PRIDE:P57723
Ensembl:ENST00000322099 Ensembl:ENST00000355852
Ensembl:ENST00000428823 Ensembl:ENST00000461554
Ensembl:ENST00000484633 GeneID:57060 KEGG:hsa:57060 UCSC:uc003dce.2
UCSC:uc003dck.2 GeneCards:GC03M051991 HGNC:HGNC:8652 MIM:608503
neXtProt:NX_P57723 PharmGKB:PA32991 GenomeRNAi:57060 NextBio:62848
ArrayExpress:P57723 Bgee:P57723 CleanEx:HS_PCBP4
Genevestigator:P57723 GermOnline:ENSG00000090097 Uniprot:P57723
Length = 403
Score = 98 (39.6 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
LR+L+ + GS+IGK G + R+R A +T+ + PERI TI + +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMI 79
Query: 83 LPALDE 88
LDE
Sbjct: 80 AFKLDE 85
Score = 40 (19.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 121 IRLIVHQSQAGCXXXXXXXXXXELRDTFDA 150
+RL++ SQ G E+R+T A
Sbjct: 104 LRLVIPASQCGSLIGKAGTKIKEIRETTGA 133
>MGI|MGI:1890471 [details] [associations]
symbol:Pcbp4 "poly(rC) binding protein 4" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006977 "DNA damage response, signal transduction by p53 class
mediator resulting in cell cycle arrest" evidence=ISO] [GO:0007050
"cell cycle arrest" evidence=ISO] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:1890471 GO:GO:0005737 GO:GO:0003677
GO:GO:0003723 GO:GO:0030529 GeneTree:ENSGT00550000074311
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K13162
CTD:57060 OrthoDB:EOG48D0VR EMBL:AF176328 EMBL:BC010694
IPI:IPI00118718 RefSeq:NP_067542.3 UniGene:Mm.286394
ProteinModelPortal:P57724 SMR:P57724 STRING:P57724
PhosphoSite:P57724 PaxDb:P57724 PRIDE:P57724
Ensembl:ENSMUST00000024260 GeneID:59092 KEGG:mmu:59092
InParanoid:P57724 NextBio:314742 Bgee:P57724 CleanEx:MM_PCBP4
Genevestigator:P57724 GermOnline:ENSMUSG00000023495 Uniprot:P57724
Length = 403
Score = 98 (39.6 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
LR+L+ + GS+IGK G + R+R A +T+ + PERI TI + +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMI 79
Query: 83 LPALDE 88
LDE
Sbjct: 80 AFKLDE 85
Score = 40 (19.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 121 IRLIVHQSQAGCXXXXXXXXXXELRDTFDA 150
+RL++ SQ G E+R+T A
Sbjct: 104 LRLVIPASQCGSLIGKAGTKIKEIRETTGA 133
>RGD|1307910 [details] [associations]
symbol:Pcbp4 "poly(rC) binding protein 4" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO] [GO:0006977
"DNA damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=ISO] [GO:0007050 "cell
cycle arrest" evidence=ISO] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307910 GO:GO:0003723
GeneTree:ENSGT00550000074311 KO:K13162 CTD:57060 OMA:MSSSDAG
OrthoDB:EOG48D0VR IPI:IPI00366708 RefSeq:NP_001178812.1
UniGene:Rn.40405 Ensembl:ENSRNOT00000017139 GeneID:363133
KEGG:rno:363133 UCSC:RGD:1307910 NextBio:682555 Uniprot:D3ZCS3
Length = 403
Score = 98 (39.6 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
LR+L+ + GS+IGK G + R+R A +T+ + PERI TI + +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMI 79
Query: 83 LPALDE 88
LDE
Sbjct: 80 AFKLDE 85
Score = 40 (19.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 121 IRLIVHQSQAGCXXXXXXXXXXELRDTFDA 150
+RL++ SQ G E+R+T A
Sbjct: 104 LRLVIPASQCGSLIGKAGTKIKEIRETTGA 133
>UNIPROTKB|I3LRN5 [details] [associations]
symbol:PCBP4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 OMA:MSSSDAG
EMBL:FP102591 Ensembl:ENSSSCT00000026653 Uniprot:I3LRN5
Length = 404
Score = 98 (39.6 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
LR+L+ + GS+IGK G + R+R A +T+ + PERI TI + +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMI 79
Query: 83 LPALDE 88
LDE
Sbjct: 80 AFKLDE 85
Score = 40 (19.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 121 IRLIVHQSQAGCXXXXXXXXXXELRDTFDA 150
+RL++ SQ G E+R+T A
Sbjct: 104 LRLVIPASQCGSLIGKAGTKIKEIRETTGA 133
>ZFIN|ZDB-GENE-040426-2122 [details] [associations]
symbol:zgc:65870 "zgc:65870" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-040426-2122
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:CU856621
EMBL:AL954840 EMBL:CABZ01011786 EMBL:CABZ01011787 EMBL:CABZ01011788
EMBL:CABZ01011789 EMBL:CABZ01011790 EMBL:CU462880 EMBL:CU469461
IPI:IPI01016643 Ensembl:ENSDART00000137945 Bgee:F1Q8M8
Uniprot:F1Q8M8
Length = 464
Score = 106 (42.4 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 16 GGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELEN 74
GG N + LRLL+ + GS+IGK G + R+R + A + + + PERI+TI E
Sbjct: 21 GGMNVTLTLRLLMHGKEVGSIIGKKGETVKRIREESSARINISEGSCPERIITITGATEC 80
Query: 75 GLKVIEEVLPALDE 88
+ + L+E
Sbjct: 81 VFRAFTMITIKLEE 94
Score = 33 (16.7 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 121 IRLIVHQSQAGCXXXXXXXXXXELRD 146
+RL++ SQ G E+R+
Sbjct: 113 LRLVIPASQCGSLIGKGGSKIKEIRE 138
>TAIR|locus:2035807 [details] [associations]
symbol:AT1G14170 "AT1G14170" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009737 "response to abscisic acid stimulus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009737 GO:GO:0003723 EMBL:AC007576
KO:K13162 HOGENOM:HOG000240086 IPI:IPI00521103 PIR:C86275
RefSeq:NP_001117282.1 UniGene:At.43386 ProteinModelPortal:Q9XI71
SMR:Q9XI71 PRIDE:Q9XI71 EnsemblPlants:AT1G14170.3 GeneID:837976
KEGG:ath:AT1G14170 TAIR:At1g14170 OMA:GATIRVN PhylomeDB:Q9XI71
ProtClustDB:CLSN2690952 Genevestigator:Q9XI71 Uniprot:Q9XI71
Length = 479
Score = 96 (38.9 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC-PG-PERILTIFA---ELEN 74
D R L P + GS+IGKGG ++R++ K+++ + + PG ER++T+++ EL +
Sbjct: 43 DTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELNH 102
Query: 75 GLKVIEEVLPALDEI 89
E V PALD +
Sbjct: 103 FGDDGELVCPALDAL 117
Score = 91 (37.1 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 20/41 (48%), Positives = 24/41 (58%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
G V +R+L+PS G VIGKGG I LRND A + V
Sbjct: 141 GEKQTVTVRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRV 181
Score = 41 (19.5 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 122 RLIVHQSQAGCXXXXXXXXXXELR 145
RL+V SQ GC E+R
Sbjct: 357 RLLVSSSQIGCLIGKGGAVISEMR 380
Score = 35 (17.4 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 121 IRLIVHQSQAGCXXXXXXXXXXELRDTFDA 150
+R++V Q GC LR+ +A
Sbjct: 148 VRMLVPSDQIGCVIGKGGQVIQNLRNDTNA 177
>ZFIN|ZDB-GENE-030131-563 [details] [associations]
symbol:pcbp2 "poly(rC) binding protein 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-030131-563 GO:GO:0003723 GeneTree:ENSGT00550000074311
HOGENOM:HOG000182823 HOVERGEN:HBG053520 CTD:5094 KO:K13162
OMA:CVVMLEL HSSP:Q9UNW9 EMBL:CR848672 EMBL:BC045508 EMBL:BC066603
EMBL:AY398394 IPI:IPI00495300 RefSeq:NP_957486.1 UniGene:Dr.76907
SMR:Q7ZVK5 Ensembl:ENSDART00000025885 GeneID:321844 KEGG:dre:321844
InParanoid:Q7ZVK5 NextBio:20807553 Uniprot:Q7ZVK5
Length = 318
Score = 99 (39.9 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 16 GGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELEN 74
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 8 GGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTTA 67
Query: 75 GLKVIEEVLPALDE 88
K ++ L+E
Sbjct: 68 IFKAFSMIIEKLEE 81
Score = 32 (16.3 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 121 IRLIVHQSQAGCXXXXXXXXXXELRDTFDA 150
+R++V SQ G E+R++ A
Sbjct: 100 LRIVVPASQCGSLIGKGGCKIKEIRESTGA 129
>RGD|1307430 [details] [associations]
symbol:Pcbp3 "poly(rC) binding protein 3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0005829 "cytosol" evidence=IEA;ISO]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307430 GO:GO:0003723
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 UniGene:Rn.107537
EMBL:BC079196 IPI:IPI00464574 RefSeq:NP_001011945.1 SMR:Q6AY48
IntAct:Q6AY48 MINT:MINT-7138861 Ensembl:ENSRNOT00000001675
GeneID:294336 KEGG:rno:294336 NextBio:638024 Genevestigator:Q6AY48
Uniprot:Q6AY48
Length = 319
Score = 93 (37.8 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 16 GGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTI 68
GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 8 GGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTI 61
Score = 36 (17.7 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 121 IRLIVHQSQAGCXXXXXXXXXXELRDTFDA 150
+RL+V SQ G E+R++ A
Sbjct: 100 LRLVVPASQCGSLIGKGGSKIKEIRESTGA 129
>UNIPROTKB|J3QT27 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AJ011931 EMBL:AJ239328
EMBL:AL133492 EMBL:AL133493 EMBL:AL592528 HGNC:HGNC:8651
ChiTaRS:PCBP3 ProteinModelPortal:J3QT27 Ensembl:ENST00000400305
Uniprot:J3QT27
Length = 322
Score = 93 (37.8 bits), Expect = 7.7e-06, Sum P(2) = 7.7e-06
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 16 GGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTI 68
GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 16 GGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTI 69
Score = 36 (17.7 bits), Expect = 7.7e-06, Sum P(2) = 7.7e-06
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 121 IRLIVHQSQAGCXXXXXXXXXXELRDTFDA 150
+RL+V SQ G E+R++ A
Sbjct: 108 LRLVVPASQCGSLIGKGGSKIKEIRESTGA 137
>ZFIN|ZDB-GENE-050522-157 [details] [associations]
symbol:pcbp3 "poly(rC) binding protein 3"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-050522-157 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:BX247868 HOVERGEN:HBG053520 IPI:IPI00868273 UniGene:Dr.159961
SMR:A8WHQ1 Ensembl:ENSDART00000148317 Uniprot:A8WHQ1
Length = 350
Score = 93 (37.8 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 16 GGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTI 68
GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 10 GGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTI 63
Score = 93 (37.8 bits), Expect = 0.00069, P = 0.00069
Identities = 29/84 (34%), Positives = 42/84 (50%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG 61
E I +SN P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 83 EDIINSMSNSPATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDML 140
Query: 62 P---ERILTIFAELENGLKVIEEV 82
P ER +TI E ++ ++++
Sbjct: 141 PNSTERAVTISGTPEAIIQCVKQI 164
Score = 36 (17.7 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 121 IRLIVHQSQAGCXXXXXXXXXXELRDTFDA 150
+RL+V SQ G E+R++ A
Sbjct: 102 LRLVVPASQCGSLIGKGGSKIKEMRESTGA 131
>UNIPROTKB|Q17QV0 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005829 "cytosol" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 OMA:FWAPSVL
OrthoDB:EOG4XH00F EMBL:DAAA02003497 EMBL:DAAA02003498
EMBL:DAAA02003499 EMBL:DAAA02003500 EMBL:DAAA02003501 EMBL:BC118166
IPI:IPI00733966 RefSeq:NP_001069752.1 UniGene:Bt.27304 SMR:Q17QV0
Ensembl:ENSBTAT00000043482 GeneID:613725 KEGG:bta:613725
InParanoid:Q17QV0 NextBio:20898729 Uniprot:Q17QV0
Length = 361
Score = 93 (37.8 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 16 GGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTI 68
GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 8 GGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTI 61
Score = 36 (17.7 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 121 IRLIVHQSQAGCXXXXXXXXXXELRDTFDA 150
+RL+V SQ G E+R++ A
Sbjct: 100 LRLVVPASQCGSLIGKGGSKIKEIRESTGA 129
>UNIPROTKB|E9PFP8 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
EMBL:AJ011931 EMBL:AJ239328 EMBL:AL133492 EMBL:AL133493
EMBL:AL592528 HGNC:HGNC:8651 ChiTaRS:PCBP3 IPI:IPI00550365
ProteinModelPortal:E9PFP8 SMR:E9PFP8 PRIDE:E9PFP8
Ensembl:ENST00000400304 UCSC:uc002zht.2 ArrayExpress:E9PFP8
Bgee:E9PFP8 Uniprot:E9PFP8
Length = 361
Score = 93 (37.8 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 16 GGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTI 68
GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 8 GGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTI 61
Score = 36 (17.7 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 121 IRLIVHQSQAGCXXXXXXXXXXELRDTFDA 150
+RL+V SQ G E+R++ A
Sbjct: 100 LRLVVPASQCGSLIGKGGSKIKEIRESTGA 129
>UNIPROTKB|E2RCH9 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AAEX03016660 Ensembl:ENSCAFT00000010991 Uniprot:E2RCH9
Length = 370
Score = 93 (37.8 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 16 GGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTI 68
GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 40 GGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTI 93
Score = 36 (17.7 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 121 IRLIVHQSQAGCXXXXXXXXXXELRDTFDA 150
+RL+V SQ G E+R++ A
Sbjct: 132 LRLVVPASQCGSLIGKGGSKIKEIRESTGA 161
>UNIPROTKB|E2QUE1 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
OMA:FWAPSVL EMBL:AAEX03016660 Ensembl:ENSCAFT00000018912
Uniprot:E2QUE1
Length = 371
Score = 93 (37.8 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 16 GGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTI 68
GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 40 GGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTI 93
Score = 36 (17.7 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 121 IRLIVHQSQAGCXXXXXXXXXXELRDTFDA 150
+RL+V SQ G E+R++ A
Sbjct: 132 LRLVVPASQCGSLIGKGGSKIKEIRESTGA 161
>UNIPROTKB|P57721 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0016071 "mRNA metabolic process" evidence=NAS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0016071
GO:GO:0003677 GO:GO:0003723 GO:GO:0030529 eggNOG:NOG315872
HOVERGEN:HBG053520 KO:K13162 EMBL:AF176329 EMBL:AK094301
EMBL:AJ011931 EMBL:AJ239328 EMBL:AL133492 EMBL:AL133493
EMBL:AL592528 EMBL:BC012061 IPI:IPI00027970 IPI:IPI00101278
IPI:IPI00167750 IPI:IPI00410586 IPI:IPI00410587
RefSeq:NP_001123613.1 RefSeq:NP_065389.2 UniGene:Hs.474049
ProteinModelPortal:P57721 SMR:P57721 IntAct:P57721
MINT:MINT-2862183 STRING:P57721 PhosphoSite:P57721 DMDM:296439262
PaxDb:P57721 PRIDE:P57721 Ensembl:ENST00000400308
Ensembl:ENST00000400309 Ensembl:ENST00000400310
Ensembl:ENST00000400314 Ensembl:ENST00000449640 GeneID:54039
KEGG:hsa:54039 UCSC:uc002zhp.2 UCSC:uc002zhq.2 UCSC:uc002zhs.2
CTD:54039 GeneCards:GC21P047063 HGNC:HGNC:8651 HPA:HPA030247
MIM:608502 neXtProt:NX_P57721 PharmGKB:PA32990 OMA:FWAPSVL
OrthoDB:EOG4XH00F ChiTaRS:PCBP3 GenomeRNAi:54039 NextBio:56330
ArrayExpress:P57721 Bgee:P57721 CleanEx:HS_PCBP3
Genevestigator:P57721 GermOnline:ENSG00000183570 Uniprot:P57721
Length = 371
Score = 93 (37.8 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 16 GGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTI 68
GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 40 GGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTI 93
Score = 36 (17.7 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 121 IRLIVHQSQAGCXXXXXXXXXXELRDTFDA 150
+RL+V SQ G E+R++ A
Sbjct: 132 LRLVVPASQCGSLIGKGGSKIKEIRESTGA 161
>MGI|MGI:1890470 [details] [associations]
symbol:Pcbp3 "poly(rC) binding protein 3" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005829 "cytosol"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:1890470 GO:GO:0005829 GO:GO:0005739
GO:GO:0005634 GO:GO:0003677 GO:GO:0003723 GO:GO:0030529
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 OMA:FWAPSVL
OrthoDB:EOG4XH00F ChiTaRS:PCBP3 EMBL:AF176327 EMBL:AK034811
EMBL:AK079564 IPI:IPI00411074 IPI:IPI00411075 RefSeq:NP_067543.2
UniGene:Mm.272803 ProteinModelPortal:P57722 SMR:P57722
STRING:P57722 PhosphoSite:P57722 PaxDb:P57722 PRIDE:P57722
Ensembl:ENSMUST00000001148 Ensembl:ENSMUST00000105411
Ensembl:ENSMUST00000168465 GeneID:59093 KEGG:mmu:59093
UCSC:uc007fuz.2 UCSC:uc007fva.2 InParanoid:P57722 NextBio:314746
Bgee:P57722 CleanEx:MM_PCBP3 Genevestigator:P57722
GermOnline:ENSMUSG00000001120 Uniprot:P57722
Length = 371
Score = 93 (37.8 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 16 GGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTI 68
GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 40 GGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTI 93
Score = 36 (17.7 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 121 IRLIVHQSQAGCXXXXXXXXXXELRDTFDA 150
+RL+V SQ G E+R++ A
Sbjct: 132 LRLVVPASQCGSLIGKGGSKIKEIRESTGA 161
>UNIPROTKB|D4A1P3 [details] [associations]
symbol:Pcbp3 "Protein Pcbp3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1307430 GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
EMBL:CH473988 OrthoDB:EOG4XH00F IPI:IPI00558998 UniGene:Rn.107537
Ensembl:ENSRNOT00000042120 Uniprot:D4A1P3
Length = 371
Score = 93 (37.8 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 16 GGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTI 68
GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 40 GGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTI 93
Score = 36 (17.7 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 121 IRLIVHQSQAGCXXXXXXXXXXELRDTFDA 150
+RL+V SQ G E+R++ A
Sbjct: 132 LRLVVPASQCGSLIGKGGSKIKEIRESTGA 161
>UNIPROTKB|C9J7A9 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HGNC:HGNC:8652
IPI:IPI00945892 ProteinModelPortal:C9J7A9 SMR:C9J7A9 STRING:C9J7A9
Ensembl:ENST00000490063 ArrayExpress:C9J7A9 Bgee:C9J7A9
Uniprot:C9J7A9
Length = 86
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 22/67 (32%), Positives = 34/67 (50%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
LR+L+ + GS+IGK G + R+R A +T+ + PERI TI + +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMI 79
Query: 83 LPALDEI 89
LDE+
Sbjct: 80 AFKLDEV 86
>ZFIN|ZDB-GENE-050706-149 [details] [associations]
symbol:zgc:110045 "zgc:110045" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-050706-149
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:CR759794
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520
OrthoDB:EOG46WZ8K EMBL:BC098540 IPI:IPI00629204
RefSeq:NP_001035073.1 UniGene:Dr.87947 SMR:Q4KMJ2
Ensembl:ENSDART00000079745 GeneID:664755 KEGG:dre:664755
OMA:QSCARIT NextBio:20902333 Uniprot:Q4KMJ2
Length = 222
Score = 103 (41.3 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 24/74 (32%), Positives = 38/74 (51%)
Query: 16 GGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELEN 74
GG N + +RLL+ + GS+IGK G + ++R + A + + D PERI+TI E
Sbjct: 11 GGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISDGSSPERIVTITGASEV 70
Query: 75 GLKVIEEVLPALDE 88
K + +E
Sbjct: 71 IFKAFAMIAEKFEE 84
>UNIPROTKB|F8W0G4 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021465
ProteinModelPortal:F8W0G4 SMR:F8W0G4 PRIDE:F8W0G4
Ensembl:ENST00000551104 ArrayExpress:F8W0G4 Bgee:F8W0G4
Uniprot:F8W0G4
Length = 158
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 16 GGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELEN 74
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 8 GGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNA 67
Query: 75 GLKVIEEVLPALDE 88
K ++ L+E
Sbjct: 68 IFKAFAMIIDKLEE 81
>FB|FBgn0262737 [details] [associations]
symbol:mub "mushroom-body expressed" species:7227 "Drosophila
melanogaster" [GO:0017130 "poly(C) RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IC] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 EMBL:AE014296
GO:GO:0003723 GO:GO:0000381 GeneTree:ENSGT00550000074311 KO:K13162
EMBL:BT030417 RefSeq:NP_001163493.1 RefSeq:NP_001246873.1
UniGene:Dm.2502 SMR:A4IJ59 STRING:A4IJ59 EnsemblMetazoa:FBtr0301364
EnsemblMetazoa:FBtr0304980 GeneID:40436 KEGG:dme:Dmel_CG7437
CTD:40436 FlyBase:FBgn0262737 GenomeRNAi:40436 NextBio:818772
Uniprot:A4IJ59
Length = 557
Score = 89 (36.4 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTI 68
+RL++ + GS+IGK G + R R + A + + D PERI+T+
Sbjct: 26 IRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSCPERIVTV 71
Score = 41 (19.5 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 121 IRLIVHQSQAGCXXXXXXXXXXELRDT 147
IRLIV SQ G E+R T
Sbjct: 105 IRLIVPASQCGSLIGKSGSKIKEIRQT 131
>UNIPROTKB|C9J5V4 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HGNC:HGNC:8652
IPI:IPI00946082 ProteinModelPortal:C9J5V4 SMR:C9J5V4 STRING:C9J5V4
Ensembl:ENST00000497653 HOGENOM:HOG000213901 ArrayExpress:C9J5V4
Bgee:C9J5V4 Uniprot:C9J5V4
Length = 107
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
LR+L+ + GS+IGK G + R+R A +T+ + PERI TI + +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMI 79
Query: 83 LPALDE 88
LDE
Sbjct: 80 AFKLDE 85
>UNIPROTKB|C9JSA6 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HGNC:HGNC:8652
IPI:IPI00945164 ProteinModelPortal:C9JSA6 SMR:C9JSA6 STRING:C9JSA6
Ensembl:ENST00000489595 ArrayExpress:C9JSA6 Bgee:C9JSA6
Uniprot:C9JSA6
Length = 92
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
LR+L+ + GS+IGK G + R+R A +T+ + PERI TI + +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMI 79
Query: 83 LPALDE 88
LDE
Sbjct: 80 AFKLDE 85
>UNIPROTKB|C9JTY5 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00978070 ProteinModelPortal:C9JTY5 SMR:C9JTY5
STRING:C9JTY5 Ensembl:ENST00000466412 ArrayExpress:C9JTY5
Bgee:C9JTY5 Uniprot:C9JTY5
Length = 124
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
LR+L+ + GS+IGK G + R+R A +T+ + PERI TI + +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMI 79
Query: 83 LPALDE 88
LDE
Sbjct: 80 AFKLDE 85
>UNIPROTKB|H9L011 [details] [associations]
symbol:LOC426023 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AADN02056329 Ensembl:ENSGALT00000021744 OMA:RALENKI
Uniprot:H9L011
Length = 195
Score = 99 (39.9 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 16 GGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELEN 74
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 8 GGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNA 67
Query: 75 GLKVIEEVLPALDE 88
K ++ L+E
Sbjct: 68 IFKAFAMIIDKLEE 81
>WB|WBGene00013347 [details] [associations]
symbol:Y59A8B.10 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 eggNOG:NOG258094
KO:K14944 EMBL:AL132898 GeneID:180183 KEGG:cel:CELE_Y59A8B.10
CTD:180183 HSSP:P51513 RefSeq:NP_001256769.1
ProteinModelPortal:Q9GRY9 SMR:Q9GRY9 DIP:DIP-24651N IntAct:Q9GRY9
MINT:MINT-1109012 STRING:Q9GRY9 PaxDb:Q9GRY9 PRIDE:Q9GRY9
EnsemblMetazoa:Y59A8B.10a UCSC:Y59A8B.10 WormBase:Y59A8B.10a
HOGENOM:HOG000017831 InParanoid:Q9GRY9 OMA:LAKYNIM NextBio:908344
ArrayExpress:Q9GRY9 Uniprot:Q9GRY9
Length = 413
Score = 105 (42.0 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 28/80 (35%), Positives = 43/80 (53%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD----CPGP-ERILTIFAE 71
G + + +++LIPS G++IGKGG + L+ND V + PG ERI +
Sbjct: 38 GGDHLSIKILIPSNAVGAIIGKGGEAMRNLKNDNNCRVQMSKNSETYPGTSERICLVKGR 97
Query: 72 LENGLKVIEEVLPALDEIRQ 91
L N + VIE + D+IR+
Sbjct: 98 LNNIMAVIESIQ---DKIRE 114
>UNIPROTKB|Q9GRY9 [details] [associations]
symbol:Y59A8B.10 "Protein Y59A8B.10, isoform a"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00650000093048 eggNOG:NOG258094 KO:K14944
EMBL:AL132898 GeneID:180183 KEGG:cel:CELE_Y59A8B.10 CTD:180183
HSSP:P51513 RefSeq:NP_001256769.1 ProteinModelPortal:Q9GRY9
SMR:Q9GRY9 DIP:DIP-24651N IntAct:Q9GRY9 MINT:MINT-1109012
STRING:Q9GRY9 PaxDb:Q9GRY9 PRIDE:Q9GRY9 EnsemblMetazoa:Y59A8B.10a
UCSC:Y59A8B.10 WormBase:Y59A8B.10a HOGENOM:HOG000017831
InParanoid:Q9GRY9 OMA:LAKYNIM NextBio:908344 ArrayExpress:Q9GRY9
Uniprot:Q9GRY9
Length = 413
Score = 105 (42.0 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 28/80 (35%), Positives = 43/80 (53%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD----CPGP-ERILTIFAE 71
G + + +++LIPS G++IGKGG + L+ND V + PG ERI +
Sbjct: 38 GGDHLSIKILIPSNAVGAIIGKGGEAMRNLKNDNNCRVQMSKNSETYPGTSERICLVKGR 97
Query: 72 LENGLKVIEEVLPALDEIRQ 91
L N + VIE + D+IR+
Sbjct: 98 LNNIMAVIESIQ---DKIRE 114
>UNIPROTKB|J9P8W8 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AAEX03014817 Ensembl:ENSCAFT00000021540 OMA:QTSSHEM
Uniprot:J9P8W8
Length = 315
Score = 103 (41.3 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 22/75 (29%), Positives = 41/75 (54%)
Query: 16 GGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELEN 74
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 8 GGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGAGINISEGNCPERIITLAGPTNA 67
Query: 75 GLKVIEEVLPALDEI 89
K ++ L+E+
Sbjct: 68 IFKAFAMIIDKLEEV 82
>UNIPROTKB|F8W1G6 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021049
Ensembl:ENST00000546652 ArrayExpress:F8W1G6 Bgee:F8W1G6
Uniprot:F8W1G6
Length = 202
Score = 99 (39.9 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 16 GGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELEN 74
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 5 GGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNA 64
Query: 75 GLKVIEEVLPALDE 88
K ++ L+E
Sbjct: 65 IFKAFAMIIDKLEE 78
>UNIPROTKB|C9IZV9 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HGNC:HGNC:8652
IPI:IPI00946687 ProteinModelPortal:C9IZV9 SMR:C9IZV9 STRING:C9IZV9
Ensembl:ENST00000483411 ArrayExpress:C9IZV9 Bgee:C9IZV9
Uniprot:C9IZV9
Length = 75
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTI 68
LR+L+ + GS+IGK G + R+R A +T+ + PERI TI
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTI 65
>RGD|1591989 [details] [associations]
symbol:LOC367191 "similar to Poly(rC)-binding protein 2
(Alpha-CP2) (Putative heterogeneous nuclear ribonucleoprotein X)
(hnRNP X) (CTBP) (CBP)" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1591989 GO:GO:0003723 IPI:IPI00555167
Ensembl:ENSRNOT00000037460 OMA:KARITIS Uniprot:D3ZTH3
Length = 107
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 21/74 (28%), Positives = 40/74 (54%)
Query: 16 GGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELEN 74
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + P+RI+T+
Sbjct: 8 GGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPKRIITLAGPTNA 67
Query: 75 GLKVIEEVLPALDE 88
K ++ L+E
Sbjct: 68 IFKAFAMIIDKLEE 81
>FB|FBgn0037549 [details] [associations]
symbol:CG7878 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006200 GO:GO:0003723 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
HSSP:P10081 OMA:VLDITHV EMBL:AY051831 RefSeq:NP_649767.1
UniGene:Dm.1098 SMR:Q7K4L8 IntAct:Q7K4L8 EnsemblMetazoa:FBtr0113205
GeneID:40959 KEGG:dme:Dmel_CG7878 UCSC:CG7878-RA
FlyBase:FBgn0037549 InParanoid:Q7K4L8 OrthoDB:EOG47D7XG
GenomeRNAi:40959 NextBio:20818674 Uniprot:Q7K4L8
Length = 703
Score = 106 (42.4 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 16 GGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC 59
GG D L I S + G VIG+GGSNI+R++NDF V + C
Sbjct: 86 GGGGDFSESLSIASEMVGKVIGRGGSNISRIQNDFNVRVKLDKC 129
>TAIR|locus:2161413 [details] [associations]
symbol:AT5G46190 "AT5G46190" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0003723 EMBL:AB006698 HSSP:Q96AE4
KO:K13162 EMBL:AY039918 EMBL:AY113859 IPI:IPI00528964
RefSeq:NP_199431.1 UniGene:At.24400 ProteinModelPortal:Q9FNK3
SMR:Q9FNK3 IntAct:Q9FNK3 PRIDE:Q9FNK3 EnsemblPlants:AT5G46190.1
GeneID:834661 KEGG:ath:AT5G46190 TAIR:At5g46190 InParanoid:Q9FNK3
OMA:GCIIGKS PhylomeDB:Q9FNK3 ProtClustDB:CLSN2916231
ArrayExpress:Q9FNK3 Genevestigator:Q9FNK3 Uniprot:Q9FNK3
Length = 644
Score = 105 (42.0 bits), Expect = 8.3e-05, P = 8.3e-05
Identities = 27/69 (39%), Positives = 38/69 (55%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD-CPG-PERILTIFAELENGLKV 78
V R+L PS V GSVIGK G I +R + +A + V D PG ER++TIF + +
Sbjct: 44 VVYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITIFCSVSEKKDI 103
Query: 79 IEEVLPALD 87
++ LD
Sbjct: 104 VDIEYSELD 112
>POMBASE|SPCC757.09c [details] [associations]
symbol:rnc1 "RNA-binding protein that suppresses
calcineurin deletion Rnc1" species:4896 "Schizosaccharomyces pombe"
[GO:0003729 "mRNA binding" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
[GO:0043409 "negative regulation of MAPK cascade" evidence=IGI]
[GO:0048255 "mRNA stabilization" evidence=IMP] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
PomBase:SPCC757.09c GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003729 GO:GO:0048255 GO:GO:0043409
HSSP:Q91WJ8 OrthoDB:EOG4Z65XM eggNOG:NOG315872 PIR:T41600
RefSeq:NP_587684.1 ProteinModelPortal:O74919 STRING:O74919
PRIDE:O74919 EnsemblFungi:SPCC757.09c.1 GeneID:2539434
KEGG:spo:SPCC757.09c HOGENOM:HOG000184255 OMA:NCESIAY
NextBio:20800596 Uniprot:O74919
Length = 398
Score = 102 (41.0 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 27/65 (41%), Positives = 40/65 (61%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRN--DFKASVT--VPDCPGPERILTIFAELENGLKV 78
LR L+ +R AG +IGK G N+A LR+ + KA VT VP+ +R+LTI LEN ++
Sbjct: 96 LRALLSTREAGIIIGKAGKNVAELRSTTNVKAGVTKAVPNVH--DRVLTISGPLENVVRA 153
Query: 79 IEEVL 83
++
Sbjct: 154 YRFII 158
>UNIPROTKB|F8VTZ0 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01020805
ProteinModelPortal:F8VTZ0 SMR:F8VTZ0 Ensembl:ENST00000550192
ArrayExpress:F8VTZ0 Bgee:F8VTZ0 Uniprot:F8VTZ0
Length = 64
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 16 GGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTI 68
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 8 GGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITL 61
>UNIPROTKB|D4ACH3 [details] [associations]
symbol:D4ACH3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
OrthoDB:EOG46WZ8K IPI:IPI00464805 Ensembl:ENSRNOT00000055302
Uniprot:D4ACH3
Length = 282
Score = 99 (39.9 bits), Expect = 0.00011, P = 0.00011
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 16 GGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELEN 74
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 8 GGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNA 67
Query: 75 GLKVIEEVLPALDE 88
K ++ L+E
Sbjct: 68 IFKAFAMIIDKLEE 81
>UNIPROTKB|B4DLC0 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HOVERGEN:HBG053520 HGNC:HGNC:8648 ChiTaRS:PCBP2
EMBL:AK296930 IPI:IPI01009186 SMR:B4DLC0 STRING:B4DLC0
Ensembl:ENST00000541275 UCSC:uc010soh.1 Uniprot:B4DLC0
Length = 301
Score = 99 (39.9 bits), Expect = 0.00012, P = 0.00012
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 16 GGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELEN 74
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 8 GGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNA 67
Query: 75 GLKVIEEVLPALDE 88
K ++ L+E
Sbjct: 68 IFKAFAMIIDKLEE 81
>UNIPROTKB|G3V0E8 [details] [associations]
symbol:PCBP2 "Poly(RC) binding protein 2, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CH471054 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 RefSeq:NP_001122386.1 UniGene:Hs.546271 GeneID:5094
KEGG:hsa:5094 CTD:5094 HGNC:HGNC:8648 KO:K13162 ChiTaRS:PCBP2
GenomeRNAi:5094 NextBio:19648 ProteinModelPortal:G3V0E8 SMR:G3V0E8
PRIDE:G3V0E8 Ensembl:ENST00000437231 Ensembl:ENST00000455667
ArrayExpress:G3V0E8 Bgee:G3V0E8 Uniprot:G3V0E8
Length = 318
Score = 99 (39.9 bits), Expect = 0.00013, P = 0.00013
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 16 GGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELEN 74
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 8 GGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNA 67
Query: 75 GLKVIEEVLPALDE 88
K ++ L+E
Sbjct: 68 IFKAFAMIIDKLEE 81
>UNIPROTKB|F8VZX2 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021216
ProteinModelPortal:F8VZX2 SMR:F8VZX2 Ensembl:ENST00000549863
ArrayExpress:F8VZX2 Bgee:F8VZX2 Uniprot:F8VZX2
Length = 321
Score = 99 (39.9 bits), Expect = 0.00013, P = 0.00013
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 16 GGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELEN 74
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 8 GGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNA 67
Query: 75 GLKVIEEVLPALDE 88
K ++ L+E
Sbjct: 68 IFKAFAMIIDKLEE 81
>UNIPROTKB|B4DXP5 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HOGENOM:HOG000182823 HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K
UniGene:Hs.546271 HGNC:HGNC:8648 ChiTaRS:PCBP2 EMBL:AK302067
IPI:IPI00900327 SMR:B4DXP5 STRING:B4DXP5 Ensembl:ENST00000552819
UCSC:uc001sdf.4 Uniprot:B4DXP5
Length = 322
Score = 99 (39.9 bits), Expect = 0.00013, P = 0.00013
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 16 GGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELEN 74
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 8 GGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNA 67
Query: 75 GLKVIEEVLPALDE 88
K ++ L+E
Sbjct: 68 IFKAFAMIIDKLEE 81
>UNIPROTKB|E2RCF9 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 CTD:5094
KO:K13162 OMA:CVVMLEL EMBL:AAEX03014980 RefSeq:XP_857995.1
ProteinModelPortal:E2RCF9 Ensembl:ENSCAFT00000010996 GeneID:477596
KEGG:cfa:477596 Uniprot:E2RCF9
Length = 331
Score = 99 (39.9 bits), Expect = 0.00014, P = 0.00014
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 16 GGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELEN 74
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 8 GGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNA 67
Query: 75 GLKVIEEVLPALDE 88
K ++ L+E
Sbjct: 68 IFKAFAMIIDKLEE 81
>UNIPROTKB|Q3SYT9 [details] [associations]
symbol:PCBP2 "Poly(RC) binding protein 2" species:9913 "Bos
taurus" [GO:0050687 "negative regulation of defense response to
virus" evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0031625 "ubiquitin
protein ligase binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0043161 GO:GO:0003723
GO:GO:0050687 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
HOGENOM:HOG000182823 HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K CTD:5094
KO:K13162 OMA:CVVMLEL EMBL:DAAA02012861 EMBL:DAAA02012860
EMBL:BC103397 IPI:IPI00696193 RefSeq:NP_001029883.1
UniGene:Bt.49118 SMR:Q3SYT9 STRING:Q3SYT9
Ensembl:ENSBTAT00000027662 GeneID:540653 KEGG:bta:540653
InParanoid:Q3SYT9 NextBio:20878753 Uniprot:Q3SYT9
Length = 349
Score = 99 (39.9 bits), Expect = 0.00015, P = 0.00015
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 16 GGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELEN 74
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 8 GGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNA 67
Query: 75 GLKVIEEVLPALDE 88
K ++ L+E
Sbjct: 68 IFKAFAMIIDKLEE 81
>UNIPROTKB|F1SFQ4 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050687 "negative regulation of defense response to
virus" evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0031625 "ubiquitin
protein ligase binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0043161 GO:GO:0003723
GO:GO:0050687 GeneTree:ENSGT00550000074311 CTD:5094 KO:K13162
OMA:CVVMLEL EMBL:CU928648 RefSeq:NP_001231441.1 UniGene:Ssc.4977
Ensembl:ENSSSCT00000000294 GeneID:397665 KEGG:ssc:397665
ArrayExpress:F1SFQ4 Uniprot:F1SFQ4
Length = 353
Score = 99 (39.9 bits), Expect = 0.00016, P = 0.00016
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 16 GGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELEN 74
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 8 GGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNA 67
Query: 75 GLKVIEEVLPALDE 88
K ++ L+E
Sbjct: 68 IFKAFAMIIDKLEE 81
>MGI|MGI:108202 [details] [associations]
symbol:Pcbp2 "poly(rC) binding protein 2" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0031625 "ubiquitin protein ligase binding" evidence=ISO]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISO] [GO:0045087 "innate immune response"
evidence=IEA] [GO:0050687 "negative regulation of defense response
to virus" evidence=ISO] [GO:0051607 "defense response to virus"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:108202 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0003677 GO:GO:0045087
GO:GO:0051607 GO:GO:0003723 GO:GO:0030529 GO:GO:0050687
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K CTD:5094 KO:K13162 OMA:CVVMLEL
ChiTaRS:PCBP2 EMBL:L19661 EMBL:X75947 EMBL:X97982 EMBL:AF236845
EMBL:AF236842 EMBL:AF236843 EMBL:AF236844 IPI:IPI00127707
IPI:IPI00221796 IPI:IPI00221799 PIR:S78515 RefSeq:NP_001096635.1
RefSeq:NP_001096636.1 RefSeq:NP_035172.2 UniGene:Mm.236513
ProteinModelPortal:Q61990 SMR:Q61990 IntAct:Q61990 STRING:Q61990
PhosphoSite:Q61990 REPRODUCTION-2DPAGE:Q61990 PaxDb:Q61990
PRIDE:Q61990 Ensembl:ENSMUST00000077037 Ensembl:ENSMUST00000078404
Ensembl:ENSMUST00000108838 GeneID:18521 KEGG:mmu:18521
UCSC:uc007xvy.2 UCSC:uc007xvz.2 UCSC:uc009vat.1 InParanoid:Q61990
NextBio:294276 Bgee:Q61990 CleanEx:MM_PCBP2 Genevestigator:Q61990
GermOnline:ENSMUSG00000056851 Uniprot:Q61990
Length = 362
Score = 99 (39.9 bits), Expect = 0.00016, P = 0.00016
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 16 GGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELEN 74
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 8 GGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNA 67
Query: 75 GLKVIEEVLPALDE 88
K ++ L+E
Sbjct: 68 IFKAFAMIIDKLEE 81
>UNIPROTKB|Q15366 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0005737
"cytoplasm" evidence=IDA;NAS] [GO:0016071 "mRNA metabolic process"
evidence=NAS] [GO:0031625 "ubiquitin protein ligase binding"
evidence=IPI] [GO:0050687 "negative regulation of defense response
to virus" evidence=IMP] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0032480 "negative
regulation of type I interferon production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 Reactome:REACT_6900 GO:GO:0005654 GO:GO:0043161
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0045087 EMBL:CH471054
GO:GO:0051607 GO:GO:0003723 GO:GO:0030529 EMBL:AC068889
GO:GO:0000398 EMBL:AC023509 GO:GO:0032480 GO:GO:0050687
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520
EMBL:X78136 EMBL:AB188306 EMBL:AK292141 EMBL:AB208825 EMBL:BC001155
EMBL:BC071942 EMBL:BC107688 IPI:IPI00012066 IPI:IPI00216689
IPI:IPI00470509 IPI:IPI00791223 IPI:IPI00796337 PIR:S65679
RefSeq:NP_001092090.1 RefSeq:NP_001122383.1 RefSeq:NP_001122384.1
RefSeq:NP_001122385.1 RefSeq:NP_001122386.1 RefSeq:NP_005007.2
RefSeq:NP_114366.1 UniGene:Hs.546271 PDB:2AXY PDB:2JZX PDB:2P2R
PDB:2PQU PDB:2PY9 PDBsum:2AXY PDBsum:2JZX PDBsum:2P2R PDBsum:2PQU
PDBsum:2PY9 ProteinModelPortal:Q15366 SMR:Q15366 DIP:DIP-58934N
IntAct:Q15366 MINT:MINT-96192 STRING:Q15366 PhosphoSite:Q15366
DMDM:6707736 PaxDb:Q15366 PeptideAtlas:Q15366 PRIDE:Q15366
DNASU:5094 Ensembl:ENST00000359282 Ensembl:ENST00000359462
Ensembl:ENST00000439930 Ensembl:ENST00000447282
Ensembl:ENST00000546463 Ensembl:ENST00000548933
Ensembl:ENST00000552296 GeneID:5094 KEGG:hsa:5094 UCSC:uc001sdl.4
CTD:5094 GeneCards:GC12P053844 HGNC:HGNC:8648 HPA:HPA038356
MIM:601210 neXtProt:NX_Q15366 PharmGKB:PA32987 InParanoid:Q15366
KO:K13162 OMA:CVVMLEL ChiTaRS:PCBP2 EvolutionaryTrace:Q15366
GenomeRNAi:5094 NextBio:19648 ArrayExpress:Q15366 Bgee:Q15366
CleanEx:HS_PCBP2 Genevestigator:Q15366 GermOnline:ENSG00000197111
Uniprot:Q15366
Length = 365
Score = 99 (39.9 bits), Expect = 0.00016, P = 0.00016
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 16 GGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELEN 74
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 8 GGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNA 67
Query: 75 GLKVIEEVLPALDE 88
K ++ L+E
Sbjct: 68 IFKAFAMIIDKLEE 81
>RGD|1309626 [details] [associations]
symbol:Pcbp2 "poly(rC) binding protein 2" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0031625 "ubiquitin
protein ligase binding" evidence=ISO] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0050687 "negative regulation of defense response to virus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1309626 GO:GO:0003723 eggNOG:NOG315872
HOVERGEN:HBG053520 CTD:5094 KO:K13162 IPI:IPI00464805 EMBL:BC078906
RefSeq:NP_001013241.1 UniGene:Rn.106644 ProteinModelPortal:Q6AYU5
SMR:Q6AYU5 PRIDE:Q6AYU5 GeneID:363005 KEGG:rno:363005
UCSC:RGD:1309626 NextBio:682109 Genevestigator:Q6AYU5
Uniprot:Q6AYU5
Length = 365
Score = 99 (39.9 bits), Expect = 0.00016, P = 0.00016
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 16 GGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELEN 74
GG N + +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+
Sbjct: 8 GGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNA 67
Query: 75 GLKVIEEVLPALDE 88
K ++ L+E
Sbjct: 68 IFKAFAMIIDKLEE 81
>UNIPROTKB|G8JLA5 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 ProteinModelPortal:G8JLA5 SMR:G8JLA5
Ensembl:ENST00000347476 Bgee:G8JLA5 Uniprot:G8JLA5
Length = 109
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 19/71 (26%), Positives = 38/71 (53%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG----PERILTIFAELENGLK 77
++++++P+ AG +IGKGG+ + + A V + P ER++T+ E E K
Sbjct: 27 QVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRK 86
Query: 78 VIEEVLPALDE 88
+E ++ + E
Sbjct: 87 AVELIIQKIQE 97
>UNIPROTKB|I3LRF8 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005829 "cytosol" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 OMA:FWAPSVL EMBL:FP312938
Ensembl:ENSSSCT00000030310 Uniprot:I3LRF8
Length = 265
Score = 95 (38.5 bits), Expect = 0.00026, P = 0.00026
Identities = 22/75 (29%), Positives = 39/75 (52%)
Query: 16 GGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELEN 74
GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI +
Sbjct: 38 GGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDA 97
Query: 75 GLKVIEEVLPALDEI 89
K + +E+
Sbjct: 98 IFKAFAMIAYKFEEV 112
>UNIPROTKB|Q5E9A3 [details] [associations]
symbol:PCBP1 "Poly(rC)-binding protein 1" species:9913 "Bos
taurus" [GO:0003697 "single-stranded DNA binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
EMBL:BT021017 IPI:IPI00687560 RefSeq:NP_001015565.1 UniGene:Bt.4620
ProteinModelPortal:Q5E9A3 SMR:Q5E9A3 MINT:MINT-6732977
STRING:Q5E9A3 PRIDE:Q5E9A3 Ensembl:ENSBTAT00000011824 GeneID:509917
KEGG:bta:509917 CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520
InParanoid:Q5E9A3 KO:K12889 OMA:RNISERN OrthoDB:EOG46WZ8K
NextBio:20869194 Uniprot:Q5E9A3
Length = 356
Score = 97 (39.2 bits), Expect = 0.00026, P = 0.00026
Identities = 20/66 (30%), Positives = 36/66 (54%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
+RLL+ + GS+IGK G ++ R+R + A + + + PERI+T+ K +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMI 75
Query: 83 LPALDE 88
+ L+E
Sbjct: 76 IDKLEE 81
>UNIPROTKB|J9P7Y9 [details] [associations]
symbol:PCBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 CTD:5093
KO:K12889 OMA:RNISERN EMBL:AAEX03007630 RefSeq:XP_538537.1
Ensembl:ENSCAFT00000005324 GeneID:481417 KEGG:cfa:481417
Uniprot:J9P7Y9
Length = 356
Score = 97 (39.2 bits), Expect = 0.00026, P = 0.00026
Identities = 20/66 (30%), Positives = 36/66 (54%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
+RLL+ + GS+IGK G ++ R+R + A + + + PERI+T+ K +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMI 75
Query: 83 LPALDE 88
+ L+E
Sbjct: 76 IDKLEE 81
>UNIPROTKB|Q15365 [details] [associations]
symbol:PCBP1 "Poly(rC)-binding protein 1" species:9606
"Homo sapiens" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=NAS] [GO:0005737 "cytoplasm" evidence=NAS]
[GO:0016071 "mRNA metabolic process" evidence=NAS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] Reactome:REACT_71
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0003723 GO:GO:0003697 GO:GO:0030529 GO:GO:0000398
eggNOG:NOG315872 CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520
KO:K12889 OMA:RNISERN OrthoDB:EOG46WZ8K EMBL:X78137 EMBL:U24223
EMBL:Z29505 EMBL:BC039742 IPI:IPI00016610 RefSeq:NP_006187.2
UniGene:Hs.2853 PDB:1WVN PDB:1ZTG PDB:3VKE PDBsum:1WVN PDBsum:1ZTG
PDBsum:3VKE ProteinModelPortal:Q15365 SMR:Q15365 DIP:DIP-38136N
IntAct:Q15365 MINT:MINT-96267 STRING:Q15365 PhosphoSite:Q15365
DMDM:42560548 OGP:Q15365 REPRODUCTION-2DPAGE:IPI00016610
UCD-2DPAGE:Q15365 PaxDb:Q15365 PeptideAtlas:Q15365 PRIDE:Q15365
DNASU:5093 Ensembl:ENST00000303577 GeneID:5093 KEGG:hsa:5093
UCSC:uc002sgf.3 GeneCards:GC02P070314 HGNC:HGNC:8647 HPA:CAB037113
MIM:601209 neXtProt:NX_Q15365 PharmGKB:PA32986 InParanoid:Q15365
PhylomeDB:Q15365 ChiTaRS:PCBP1 EvolutionaryTrace:Q15365
GenomeRNAi:5093 NextBio:19644 ArrayExpress:Q15365 Bgee:Q15365
CleanEx:HS_PCBP1 Genevestigator:Q15365 GermOnline:ENSG00000169564
Uniprot:Q15365
Length = 356
Score = 97 (39.2 bits), Expect = 0.00026, P = 0.00026
Identities = 20/66 (30%), Positives = 36/66 (54%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
+RLL+ + GS+IGK G ++ R+R + A + + + PERI+T+ K +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMI 75
Query: 83 LPALDE 88
+ L+E
Sbjct: 76 IDKLEE 81
>UNIPROTKB|I3LEC2 [details] [associations]
symbol:PCBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GO:GO:0003697 GeneTree:ENSGT00550000074311 KO:K12889
OMA:RNISERN EMBL:CU928518 RefSeq:XP_003125105.1
Ensembl:ENSSSCT00000028976 GeneID:100511501 KEGG:ssc:100511501
Uniprot:I3LEC2
Length = 356
Score = 97 (39.2 bits), Expect = 0.00026, P = 0.00026
Identities = 20/66 (30%), Positives = 36/66 (54%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
+RLL+ + GS+IGK G ++ R+R + A + + + PERI+T+ K +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMI 75
Query: 83 LPALDE 88
+ L+E
Sbjct: 76 IDKLEE 81
>MGI|MGI:1345635 [details] [associations]
symbol:Pcbp1 "poly(rC) binding protein 1" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISO;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0008494 "translation activator
activity" evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=TAS] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:1345635 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 GO:GO:0008494 GO:GO:0003697
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K12889
OMA:RNISERN OrthoDB:EOG46WZ8K ChiTaRS:PCBP1 EMBL:AF139894
EMBL:AF139895 EMBL:BC069915 EMBL:BC004793 IPI:IPI00128904
RefSeq:NP_035995.1 UniGene:Mm.274146 ProteinModelPortal:P60335
SMR:P60335 IntAct:P60335 STRING:P60335 PhosphoSite:P60335
REPRODUCTION-2DPAGE:IPI00128904 REPRODUCTION-2DPAGE:P60335
PaxDb:P60335 PRIDE:P60335 Ensembl:ENSMUST00000053015 GeneID:23983
KEGG:mmu:23983 InParanoid:P60335 NextBio:303869 Bgee:P60335
CleanEx:MM_PCBP1 Genevestigator:P60335
GermOnline:ENSMUSG00000051695 Uniprot:P60335
Length = 356
Score = 97 (39.2 bits), Expect = 0.00026, P = 0.00026
Identities = 20/66 (30%), Positives = 36/66 (54%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
+RLL+ + GS+IGK G ++ R+R + A + + + PERI+T+ K +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMI 75
Query: 83 LPALDE 88
+ L+E
Sbjct: 76 IDKLEE 81
>RGD|1561319 [details] [associations]
symbol:Pcbp1 "poly(rC) binding protein 1" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1561319 GO:GO:0003723 GO:GO:0003697 OMA:RNISERN
OrthoDB:EOG46WZ8K IPI:IPI00882480 ProteinModelPortal:D3ZS68
SMR:D3ZS68 PRIDE:D3ZS68 Ensembl:ENSRNOT00000023806 UCSC:RGD:1561319
Uniprot:D3ZS68
Length = 356
Score = 97 (39.2 bits), Expect = 0.00026, P = 0.00026
Identities = 20/66 (30%), Positives = 36/66 (54%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
+RLL+ + GS+IGK G ++ R+R + A + + + PERI+T+ K +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMI 75
Query: 83 LPALDE 88
+ L+E
Sbjct: 76 IDKLEE 81
>ZFIN|ZDB-GENE-070424-78 [details] [associations]
symbol:zgc:162999 "zgc:162999" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
Pfam:PF13014 PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-070424-78
GO:GO:0003723 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 EMBL:BC135088 IPI:IPI00845944
RefSeq:NP_001083021.1 UniGene:Dr.122660 ProteinModelPortal:A4IGG5
SMR:A4IGG5 PRIDE:A4IGG5 GeneID:100038772 KEGG:dre:100038772
NextBio:20788560 Bgee:A4IGG5 Uniprot:A4IGG5
Length = 350
Score = 96 (38.9 bits), Expect = 0.00033, P = 0.00033
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 16 GGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTI 68
GG N + +RLL+ + GS+IGK G + ++R + A + V + PERI+TI
Sbjct: 10 GGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESSARINVSEGNCPERIVTI 63
Score = 95 (38.5 bits), Expect = 0.00042, P = 0.00042
Identities = 29/84 (34%), Positives = 43/84 (51%)
Query: 2 EFFIQQLSNFKRFRGGPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG 61
E I +SN + P V LRL++P+ GS+IGKGGS I +R A V V
Sbjct: 83 EDIINSMSNSQATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDML 140
Query: 62 P---ERILTIFAELENGLKVIEEV 82
P ER +TI E ++ ++++
Sbjct: 141 PNSTERAVTISGTPEAIIQCVKQI 164
>WB|WBGene00003978 [details] [associations]
symbol:pes-4 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 EMBL:FO081827 GeneTree:ENSGT00550000074311
eggNOG:NOG315872 RefSeq:NP_497351.3 ProteinModelPortal:Q95Y67
SMR:Q95Y67 PaxDb:Q95Y67 EnsemblMetazoa:Y119D3B.17 GeneID:175288
KEGG:cel:CELE_Y119D3B.17 UCSC:Y119D3B.17 CTD:175288
WormBase:Y119D3B.17 HOGENOM:HOG000020666 InParanoid:Q95Y67
OMA:PHSTERA NextBio:887534 Uniprot:Q95Y67
Length = 432
Score = 97 (39.2 bits), Expect = 0.00035, P = 0.00035
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAEL 72
+RLL+ + GS+IGK G I ++R + A + + D PERI+TI L
Sbjct: 74 IRLLMQGKEVGSIIGKKGDQIKKIREESGAKINISDGSCPERIVTITGTL 123
>UNIPROTKB|F1NPL2 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00812713 Ensembl:ENSGALT00000021485 ArrayExpress:F1NPL2
Uniprot:F1NPL2
Length = 319
Score = 94 (38.1 bits), Expect = 0.00046, P = 0.00046
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 16 GGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTI 68
GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 8 GGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGSCPERIVTI 61
>UNIPROTKB|F1NPL4 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00571530 Ensembl:ENSGALT00000021482 ArrayExpress:F1NPL4
Uniprot:F1NPL4
Length = 326
Score = 94 (38.1 bits), Expect = 0.00048, P = 0.00048
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 16 GGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTI 68
GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 8 GGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGSCPERIVTI 61
>UNIPROTKB|D4A6P7 [details] [associations]
symbol:Nova1 "RNA-binding protein Nova-1" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0003723 IPI:IPI00951323
Ensembl:ENSRNOT00000066327 ArrayExpress:D4A6P7 Uniprot:D4A6P7
Length = 155
Score = 87 (35.7 bits), Expect = 0.00049, P = 0.00049
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PGP-ERILTIFAELE 73
L++LIPS AGS+IGKGG I +L+ + A++ + PG ER+ I +E
Sbjct: 51 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIE 106
>UNIPROTKB|F1NPL3 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00591502 Ensembl:ENSGALT00000021483 OMA:DLNMNLS
ArrayExpress:F1NPL3 Uniprot:F1NPL3
Length = 356
Score = 94 (38.1 bits), Expect = 0.00055, P = 0.00055
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 16 GGPN-DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTI 68
GG N + +RLL+ + GS+IGK G + ++R + A + + + PERI+TI
Sbjct: 7 GGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGSCPERIVTI 60
>UNIPROTKB|F1M8T3 [details] [associations]
symbol:F1M8T3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074311 IPI:IPI00780141
Ensembl:ENSRNOT00000055638 OMA:SISEGNC Uniprot:F1M8T3
Length = 214
Score = 90 (36.7 bits), Expect = 0.00059, P = 0.00059
Identities = 16/46 (34%), Positives = 31/46 (67%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTI 68
+RLL+ + GS+IGK G ++ ++R + A +++ + PERI+T+
Sbjct: 6 IRLLMHGKEVGSIIGKDGESVKKMRKESGARISISEGNCPERIITL 51
>UNIPROTKB|I3L2B5 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 ProteinModelPortal:I3L2B5 SMR:I3L2B5
Ensembl:ENST00000574031 Bgee:I3L2B5 Uniprot:I3L2B5
Length = 152
Score = 86 (35.3 bits), Expect = 0.00060, P = 0.00060
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PGP-ERILTIFAELE 73
L++LIPS AGS+IGKGG I +L+ + A++ + PG ER+ I +E
Sbjct: 52 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVE 107
>UNIPROTKB|J3KQU3 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 Ensembl:ENST00000449198 Uniprot:J3KQU3
Length = 277
Score = 91 (37.1 bits), Expect = 0.00077, P = 0.00077
Identities = 19/71 (26%), Positives = 38/71 (53%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG----PERILTIFAELENGLK 77
++++++P+ AG +IGKGG+ + + A V + P ER++T+ E E K
Sbjct: 132 QVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRK 191
Query: 78 VIEEVLPALDE 88
+E ++ + E
Sbjct: 192 AVELIIQKIQE 202
>TAIR|locus:2056951 [details] [associations]
symbol:AT2G03110 "AT2G03110" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
EMBL:BT012113 EMBL:BT012369 IPI:IPI00542292 RefSeq:NP_178410.2
UniGene:At.23438 ProteinModelPortal:Q6NLG5 SMR:Q6NLG5
EnsemblPlants:AT2G03110.1 GeneID:814840 KEGG:ath:AT2G03110
TAIR:At2g03110 InParanoid:Q6NLG5 PhylomeDB:Q6NLG5
Genevestigator:Q6NLG5 Uniprot:Q6NLG5
Length = 153
Score = 85 (35.0 bits), Expect = 0.00081, P = 0.00080
Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
G V +R+L+PS G +IGKGG I LRND A + V
Sbjct: 69 GQTVVTVRMLVPSDQIGYLIGKGGPIIQTLRNDTNAQIRV 108
>UNIPROTKB|F1NP95 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 EMBL:AADN02003296
EMBL:AADN02003297 EMBL:AADN02003298 EMBL:AADN02003299
EMBL:AADN02003300 EMBL:AADN02003301 EMBL:AADN02003302
EMBL:AADN02003303 EMBL:AADN02003304 EMBL:AADN02003305
EMBL:AADN02003306 EMBL:AADN02003307 EMBL:AADN02003308
EMBL:AADN02003309 EMBL:AADN02003310 EMBL:AADN02003311
EMBL:AADN02003312 EMBL:AADN02003313 EMBL:AADN02003314
EMBL:AADN02003315 IPI:IPI00814536 Ensembl:ENSGALT00000016012
ArrayExpress:F1NP95 Uniprot:F1NP95
Length = 345
Score = 92 (37.4 bits), Expect = 0.00087, P = 0.00087
Identities = 19/71 (26%), Positives = 38/71 (53%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG----PERILTIFAELENGLK 77
++++++P+ AG +IGKGG+ + + A V + P ER++T+ E E K
Sbjct: 132 QVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRK 191
Query: 78 VIEEVLPALDE 88
+E ++ + E
Sbjct: 192 AVELIIQKIQE 202
>UNIPROTKB|B7ZAG4 [details] [associations]
symbol:TDRKH "cDNA, FLJ79178, highly similar to Tudor and
KH domain-containing protein" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF13014 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 EMBL:AL589765 UniGene:Hs.144439 HGNC:HGNC:11713
EMBL:AK316279 IPI:IPI00922525 SMR:B7ZAG4 STRING:B7ZAG4
Ensembl:ENST00000525790 Ensembl:ENST00000526413 Uniprot:B7ZAG4
Length = 140
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVP-DCPGPERILTI 68
G +D+E+ + +P +IG+ G+NI +LR A + V + G ER+L I
Sbjct: 49 GEDDIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLI 101
>UNIPROTKB|E9PKN8 [details] [associations]
symbol:TDRKH "Tudor and KH domain-containing protein"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005739 GO:GO:0003723 EMBL:AL589765 HGNC:HGNC:11713
IPI:IPI00981760 ProteinModelPortal:E9PKN8 SMR:E9PKN8
Ensembl:ENST00000526378 ArrayExpress:E9PKN8 Bgee:E9PKN8
Uniprot:E9PKN8
Length = 131
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVP-DCPGPERILTI 68
G +D+E+ + +P +IG+ G+NI +LR A + V + G ER+L I
Sbjct: 49 GEDDIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLI 101
>UNIPROTKB|F8VYI3 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 IPI:IPI01017995
ProteinModelPortal:F8VYI3 SMR:F8VYI3 PRIDE:F8VYI3
Ensembl:ENST00000483536 ArrayExpress:F8VYI3 Bgee:F8VYI3
Uniprot:F8VYI3
Length = 121
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASV 54
L++LIPS AGS+IGKGG I +L+ + A++
Sbjct: 52 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATI 83
>TAIR|locus:2017612 [details] [associations]
symbol:AT1G51580 "AT1G51580" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC025294
EMBL:AC024261 GO:GO:0003723 UniGene:At.37784 eggNOG:NOG285495
UniGene:At.66909 KO:K13162 EMBL:BT008776 EMBL:AK227874
IPI:IPI00539866 PIR:D96554 RefSeq:NP_175569.1
ProteinModelPortal:Q9C553 SMR:Q9C553 IntAct:Q9C553 PaxDb:Q9C553
PRIDE:Q9C553 EnsemblPlants:AT1G51580.1 GeneID:841583
KEGG:ath:AT1G51580 TAIR:At1g51580 HOGENOM:HOG000077702
InParanoid:Q9C553 OMA:PGFDRPP PhylomeDB:Q9C553
ProtClustDB:CLSN2679414 Genevestigator:Q9C553 Uniprot:Q9C553
Length = 621
Score = 95 (38.5 bits), Expect = 0.00093, P = 0.00093
Identities = 25/57 (43%), Positives = 34/57 (59%)
Query: 20 DVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV--PDCPGPERILTIFAELEN 74
+V RLL P+ GS+IGKGG+ + L+N+ AS+ V P ERI+ I A EN
Sbjct: 275 EVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVISAR-EN 330
>UNIPROTKB|F8VWX1 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 IPI:IPI01020747
ProteinModelPortal:F8VWX1 SMR:F8VWX1 Ensembl:ENST00000549571
ArrayExpress:F8VWX1 Bgee:F8VWX1 Uniprot:F8VWX1
Length = 173
Score = 86 (35.3 bits), Expect = 0.00095, P = 0.00095
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PGP-ERILTIFAELE 73
L++LIPS AGS+IGKGG I +L+ + A++ + PG ER+ I +E
Sbjct: 15 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVE 70
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.142 0.410 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 150 111 0.00091 102 3 11 22 0.43 30
29 0.42 32
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 96
No. of states in DFA: 492 (52 KB)
Total size of DFA: 94 KB (2069 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 11.00u 0.18s 11.18t Elapsed: 00:00:00
Total cpu time: 11.00u 0.18s 11.18t Elapsed: 00:00:00
Start: Thu Aug 15 11:22:38 2013 End: Thu Aug 15 11:22:38 2013