RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7546
(150 letters)
>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 63.6 bits (155), Expect = 5e-15
Identities = 19/68 (27%), Positives = 37/68 (54%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ +RLL+ + GS+IGK G ++ ++R + A + + + PERI+T+ K
Sbjct: 4 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFA 63
Query: 81 EVLPALDE 88
++ L+E
Sbjct: 64 MIIDKLEE 71
Score = 41.7 bits (98), Expect = 1e-06
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 121 IRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
IRL++H + G IIGK G +K++R+ A
Sbjct: 6 IRLLMHGKEVGSIIGKKGESVKKMREESGA 35
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 81
Score = 52.4 bits (126), Expect = 1e-10
Identities = 17/74 (22%), Positives = 24/74 (32%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKV 78
+ IP VIGK G + L + +P P + I E K
Sbjct: 8 TQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGTKEGIEKA 67
Query: 79 IEEVLPALDEIRQK 92
EVL E ++
Sbjct: 68 RHEVLLISAEQDKR 81
Score = 32.8 bits (75), Expect = 0.003
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 121 IRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
+ + + +IGK G K+++L
Sbjct: 12 ATVAIPKEHHRFVIGKNGEKLQDLELKTAT 41
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 52.1 bits (125), Expect = 2e-10
Identities = 16/72 (22%), Positives = 35/72 (48%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
V + + +P + VIG+ GS I ++ ++F+ ++ VP I+ I N +
Sbjct: 10 VTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGLAANLDRAKA 69
Query: 81 EVLPALDEIRQK 92
+L + E++ +
Sbjct: 70 GLLERVKELQAE 81
Score = 31.7 bits (72), Expect = 0.007
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 121 IRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
I + V +IG+ G+ I+++ D F+
Sbjct: 12 IEVEVPFDLHRYVIGQKGSGIRKMMDEFEV 41
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 79
Score = 51.0 bits (122), Expect = 4e-10
Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--PERILTIFAELENGLKV 78
+ +P + G +IG+GG I+R++ + + + G PER + E+
Sbjct: 8 MTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSA 67
Query: 79 IEEVLPALDEIR 90
+ +++ R
Sbjct: 68 KRLLDQIVEKGR 79
Score = 34.4 bits (79), Expect = 6e-04
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 122 RLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
V G IIG+GG +I ++
Sbjct: 11 EYKVPDGMVGFIIGRGGEQISRIQQESGC 39
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 50.0 bits (119), Expect = 1e-09
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 7/86 (8%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD----CPGPERILTIFAELEN-- 74
V +L +P R G +IG+GG I + A +T R++ I +
Sbjct: 15 VFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVA 74
Query: 75 -GLKVIEEVLPALDEIRQKYGKGRGG 99
+I E + +E+R++ G
Sbjct: 75 AAKHLILEKVSEDEELRKRIAHSASG 100
Score = 34.2 bits (78), Expect = 0.001
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 121 IRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
+L V Q G IIG+GG I+ + A
Sbjct: 17 EQLSVPQRSVGRIIGRGGETIRSICKASGA 46
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 81
Score = 48.8 bits (116), Expect = 3e-09
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 17 GPNDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDC----PGPERILTIFAEL 72
GP + ++IP+ AG VIGKGG I +L+ + + G ++ L I +
Sbjct: 4 GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDP 63
Query: 73 ENGLKVIEEVLPALDE 88
+ E VL + +
Sbjct: 64 YKVQQAKEMVLELIRD 79
Score = 35.3 bits (81), Expect = 3e-04
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 121 IRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
+++ S+AG +IGKGG IK+L++
Sbjct: 10 QEIMIPASKAGLVIGKGGETIKQLQERAGV 39
>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP
{Human (Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 48.4 bits (115), Expect = 3e-09
Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 12/76 (15%)
Query: 22 ELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP-----ERILTIFAELENGL 76
E ++P+ G +IGKGG I + A + + P P ++ TI +
Sbjct: 2 EFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQ-- 59
Query: 77 KVIEEVLPALDEIRQK 92
+ A I +K
Sbjct: 60 -----IDYARQLIEEK 70
Score = 35.6 bits (82), Expect = 2e-04
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 121 IRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
IV + G IIGKGG IK + A
Sbjct: 3 FNFIVPTGKTGLIIGKGGETIKSISQQSGA 32
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 75
Score = 48.3 bits (115), Expect = 3e-09
Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPG--PERILTIFAELENGL 76
+ ++ IP +AGS+IGKGG I ++R++ AS+ + + +RI+TI +
Sbjct: 2 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQ 61
Query: 77 KVIEEVLPALDE 88
+ ++ +
Sbjct: 62 NAQYLLQNSVKQ 73
Score = 36.0 bits (83), Expect = 2e-04
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 121 IRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
++ + + AG IIGKGG +IK++R A
Sbjct: 6 TQVTIPKDLAGSIIGKGGQRIKQIRHESGA 35
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 70
Score = 48.3 bits (115), Expect = 3e-09
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 9/72 (12%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGLKVIE 80
L IP+ + G +IG+ G+NI +R A + + + R +TI +
Sbjct: 4 HELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAAS------ 57
Query: 81 EVLPALDEIRQK 92
+ A I +
Sbjct: 58 -ISLAQYLINAR 68
Score = 36.3 bits (84), Expect = 1e-04
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 121 IRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
L + + GCIIG+ G I E+R A
Sbjct: 4 HELTIPNNLIGCIIGRQGANINEIRQMSGA 33
>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 84
Score = 48.7 bits (116), Expect = 4e-09
Identities = 14/74 (18%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP---ERILTIFAELENGLK 77
+L + + + +IG+ G+ I ++R + ++ PD + +TI +N
Sbjct: 10 FKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEKNTEA 69
Query: 78 VIEEVLPALDEIRQ 91
+ +L + E+ Q
Sbjct: 70 ARDAILRIVGELEQ 83
Score = 31.0 bits (70), Expect = 0.013
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 119 YDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
+ + + V IIG+ G I ++R D
Sbjct: 10 FKLSVTVDPKYHPKIIGRKGAVITQIRLEHDV 41
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP
{Human (Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 46.8 bits (111), Expect = 1e-08
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCP--GPERILTIFAELENGLKVIE 80
+ + IP G VIG+ G I +++ND + PERI I + E
Sbjct: 5 IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRAQHAAE 64
Query: 81 EVLPALDEIR 90
+ L ++
Sbjct: 65 IITDLLRSVQ 74
Score = 35.2 bits (81), Expect = 4e-04
Identities = 7/32 (21%), Positives = 17/32 (53%)
Query: 119 YDIRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
+ I + + + G +IG+ G IK++++
Sbjct: 3 HMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGV 34
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2,
nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 47.1 bits (112), Expect = 1e-08
Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 12/75 (16%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGP-----ERILTIFAELENGLK 77
+ + +P + G+++GKGG + + A + + R +TI
Sbjct: 5 VEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAA--- 61
Query: 78 VIEEVLPALDEIRQK 92
A I Q+
Sbjct: 62 ----TQAAQYLISQR 72
Score = 37.9 bits (88), Expect = 3e-05
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 121 IRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
+ + V ++ G I+GKGG + E ++ A
Sbjct: 5 VEMAVPENLVGAILGKGGKTLVEYQELTGA 34
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 71
Score = 46.7 bits (111), Expect = 1e-08
Identities = 15/63 (23%), Positives = 31/63 (49%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIE 80
+ + I + +IGK G+NI R+++ +K SV +P ++ I + + +
Sbjct: 5 DYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGDPQGVQQAKR 64
Query: 81 EVL 83
E+L
Sbjct: 65 ELL 67
Score = 29.7 bits (67), Expect = 0.027
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 121 IRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
+ + + +IGK G I ++D +
Sbjct: 7 VEINIDHKFHRHLIGKSGANINRIKDQYKV 36
>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 81
Score = 46.3 bits (110), Expect = 2e-08
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPD-CPGPERILTIFAELENGLK 77
V + + RV +IG G I ++ ++FK + P +T+ EN +
Sbjct: 8 QMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGLPENVEE 67
Query: 78 VIEEVL 83
I+ +L
Sbjct: 68 AIDHIL 73
Score = 27.9 bits (62), Expect = 0.17
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 121 IRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
+ + IIG G I+++ D F
Sbjct: 12 EDVPLDHRVHARIIGARGKAIRKIMDEFKV 41
>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 82
Score = 46.0 bits (109), Expect = 4e-08
Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 19 NDVELRLLIPSRVAGSVIGKGGSNIARLRNDF-KASVTVPDCPGPERILTIFAELENGLK 77
N E+ + IP+++ S+IG G I + + + P + I + K
Sbjct: 8 NIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPSSDVEK 67
Query: 78 VIEEVLPALDEIRQK 92
+++L +E + K
Sbjct: 68 AKKQLLHLAEEKQTK 82
Score = 28.3 bits (63), Expect = 0.11
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 121 IRLIVHQSQAGCIIGKGGTKIKELRD 146
+ + + +IG G I+ + +
Sbjct: 12 VEVSIPAKLHNSLIGTKGRLIRSIME 37
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein
1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 84
Score = 36.3 bits (84), Expect = 2e-04
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEV 82
I VIGK GS I L+++ + V ++ + + E +
Sbjct: 7 INPARVPRVIGKKGSMIKLLKSELDVQIVVGQ----NGLIWVNGDRRKVSIAEEAI 58
Score = 24.3 bits (53), Expect = 3.1
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 125 VHQSQAGCIIGKGGTKIKELRDTFDA 150
++ ++ +IGK G+ IK L+ D
Sbjct: 7 INPARVPRVIGKKGSMIKLLKSELDV 32
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide
phosphorylase/guanosine pentaphosphate synthase
(PNPase/GPSI), domain 6 {Streptomyces antibioticus
[TaxId: 1890]}
Length = 54
Score = 33.1 bits (76), Expect = 0.001
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 24 RLLIPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFA 70
+ IP G VIG I +++ D A +T+ D + + I A
Sbjct: 6 TVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED----DGTIYIGA 48
Score = 27.3 bits (61), Expect = 0.14
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 121 IRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
I + + + G +IG I ++++ A
Sbjct: 5 ITVKIPVDKIGEVIGPKRQMINQIQEDTGA 34
>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 90
Score = 33.3 bits (76), Expect = 0.002
Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 21 VELRLLIPSRVAGSVIGKGGSNIARLRNDF-KASVTVPDCPGPERILTIFAELENGLKVI 79
+ PS + +IGK G N+A++ K + + E +T+ E+
Sbjct: 21 TVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE---GEDKITLEGPTEDVSVAQ 77
Query: 80 EEVLPALDEIRQK 92
E++ + ++ +
Sbjct: 78 EQIEGMVKDLINR 90
Score = 24.4 bits (53), Expect = 3.4
Identities = 5/29 (17%), Positives = 9/29 (31%)
Query: 121 IRLIVHQSQAGCIIGKGGTKIKELRDTFD 149
+ IIGK G + ++
Sbjct: 23 SSVAAPSWLHRFIIGKKGQNLAKITQQMP 51
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation
syndrome related protein 1, FXR1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 78
Score = 31.4 bits (71), Expect = 0.008
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTVPDCPGPERILTIFAE----LENGLKVIEEV 82
+ + G IG GSNI + R + D I+ E ++ +E V
Sbjct: 14 VREDLMGLAIGTHGSNIQQARKVPGVTAIELDE--DTGTFRIYGESADAVKKARGFLEFV 71
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein
1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]}
Length = 69
Score = 29.7 bits (67), Expect = 0.033
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTVPD 58
I VIGK S L + S+ V +
Sbjct: 7 IMPVKVPRVIGKNKSMYETLTSKSGCSIFVAN 38
Score = 23.9 bits (52), Expect = 3.2
Identities = 4/26 (15%), Positives = 9/26 (34%)
Query: 125 VHQSQAGCIIGKGGTKIKELRDTFDA 150
+ + +IGK + + L
Sbjct: 7 IMPVKVPRVIGKNKSMYETLTSKSGC 32
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum
pernix [TaxId: 56636]}
Length = 84
Score = 29.4 bits (66), Expect = 0.048
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFKASVTV 56
+ + + G+VIG G A + +TV
Sbjct: 5 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITV 38
Score = 28.6 bits (64), Expect = 0.084
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 121 IRLIVHQSQAGCIIGKGGTKIKELRDTFDA 150
I + V + G +IG G E+
Sbjct: 5 IYVKVKPERLGAVIGPRGEVKAEIMRRTGT 34
>d2uubc1 d.52.3.1 (C:2-106) Ribosomal protein S3 N-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 105
Score = 29.8 bits (67), Expect = 0.052
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 121 IRLIVHQSQAGCIIGKGGTKIKELR 145
+ + VH ++ G +IG+GG +I+ LR
Sbjct: 63 VAVTVHVAKPGVVIGRGGERIRVLR 87
Score = 24.4 bits (53), Expect = 4.1
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 23 LRLLIPSRVAGSVIGKGGSNIARLRNDFK 51
+ + + G VIG+GG I LR +
Sbjct: 63 VAVTVHVAKPGVVIGRGGERIRVLREELA 91
>d2qalc1 d.52.3.1 (C:1-105) Ribosomal protein S3 N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 105
Score = 29.0 bits (65), Expect = 0.081
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 121 IRLIVHQSQAGCIIGKGGTKIKELR 145
IR+ +H ++ G +IGK G +++LR
Sbjct: 63 IRVTIHTARPGIVIGKKGEDVEKLR 87
Score = 25.6 bits (56), Expect = 1.6
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 2 EFFIQQLSNFKRFRGGPNDVEL-------RLLIPSRVAGSVIGKGGSNIARLRNDFK 51
+F ++Q + + + + + R+ I + G VIGK G ++ +LR
Sbjct: 35 DFKVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVA 91
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein
1, ECR1 {Aeropyrum pernix [TaxId: 56636]}
Length = 87
Score = 28.1 bits (63), Expect = 0.16
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 27 IPSRVAGSVIGKGGSNIARLRNDFKASVTVPD 58
I VIG+ S + L + + V
Sbjct: 7 ISPAKVPRVIGRKMSMLKTLEEKTECKIFVAR 38
>d1wf3a2 d.52.3.1 (A:181-298) GTPase Era C-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 118
Score = 28.2 bits (63), Expect = 0.19
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 123 LIVHQSQAGCIIGKGGTKIKELR 145
+ SQ +IG+GG KIKE+
Sbjct: 55 YVERPSQKAIVIGEGGRKIKEIG 77
>d1egaa2 d.52.3.1 (A:183-295) GTPase Era C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 113
Score = 26.7 bits (59), Expect = 0.57
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 126 HQSQAGCIIGKGGTKIKELR 145
+ Q +IG G KIK +
Sbjct: 57 REGQKKMVIGNKGAKIKTIG 76
>d1wh9a_ d.52.3.1 (A:) Ribosomal protein S3 N-terminal domain {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 92
Score = 26.6 bits (59), Expect = 0.60
Identities = 6/25 (24%), Positives = 15/25 (60%)
Query: 121 IRLIVHQSQAGCIIGKGGTKIKELR 145
+I+ ++ ++G+ G +I+EL
Sbjct: 37 TEIIILATRTQNVLGEKGRRIRELT 61
>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754
{Aeropyrum pernix [TaxId: 56636]}
Length = 104
Score = 26.6 bits (59), Expect = 0.62
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 29 SRVAGSVIGKGGSNIARLRNDFKASVTVPDCP 60
R+ G +IG+GG + + V +
Sbjct: 21 KRIKGRIIGEGGRARRTIEEMTDTYINVGEYE 52
>d1udxa1 b.117.1.1 (A:1-156) Obg GTP-binding protein N-terminal
domain {Thermus thermophilus [TaxId: 274]}
Length = 156
Score = 26.8 bits (59), Expect = 0.74
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 90 RQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCIIGKGG 138
R++ +GG DGGDG GG V + + + S+ G
Sbjct: 23 RREKFVPKGGPDGGDGGRGGSV--YLRARGSVDSLSRLSKRTYKAEDGE 69
>d1iwpg_ a.23.2.1 (G:) Diol dehydratase, gamma subunit {Klebsiella
pneumoniae [TaxId: 573]}
Length = 138
Score = 26.2 bits (58), Expect = 1.2
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 36 IGKGGSNIARLRNDFKAS--VTVPDCPGPERILTIFAELENGLKVIEEVLPALDEIRQKY 93
I + A RN +A+ + +PD ERIL I+ L E+L DE+ +
Sbjct: 57 IAEQMQRHAVARNFRRAAELIAIPD----ERILAIYNALRPFRSSQAELLAIADELEHTW 112
Query: 94 G 94
Sbjct: 113 H 113
>d1eexg_ a.23.2.1 (G:) Diol dehydratase, gamma subunit {Klebsiella
oxytoca [TaxId: 571]}
Length = 137
Score = 25.8 bits (57), Expect = 1.6
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 36 IGKGGSNIARLRNDFKAS--VTVPDCPGPERILTIFAELENGLKVIEEVLPALDEIRQKY 93
I K N +A+ VPD +RIL I+ L EE+L D++ +Y
Sbjct: 56 IAKDAGRDRLAMNFERAAELTAVPD----DRILEIYNALRPYRSTKEELLAIADDLESRY 111
Query: 94 G 94
Sbjct: 112 Q 112
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 26.1 bits (56), Expect = 1.7
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 44 ARLRNDFKASVTVPDCPGPERILTIFAELEN 74
+ N F ++ VP+ E++L L N
Sbjct: 159 MEMLNAFSTTIHVPNIATGEQLLEALELLGN 189
>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 248
Score = 25.7 bits (56), Expect = 2.4
Identities = 6/37 (16%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 65 ILTIFAELENGLKV---IEEVLPALDEIRQKYGKGRG 98
I L +K+ +EE + + ++ +++ G
Sbjct: 209 ISDTLELLRPKIKLCNSLEESIRQVQDLEREFLIKLG 245
>d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II
polypeptide A small phosphatase 1, NRAMP1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 181
Score = 25.4 bits (55), Expect = 2.7
Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 3/28 (10%)
Query: 4 FIQQLSNF---KRFRGGPNDVELRLLIP 28
++ N + +D EL L+P
Sbjct: 137 YVFHPDNAVPVASWFDNMSDTELHDLLP 164
>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A
homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Length = 125
Score = 25.0 bits (54), Expect = 3.1
Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 3/52 (5%)
Query: 43 IARLRNDFKASVTVPDCPGPERILTIFAELENGLKVIEEVLPALDEIRQKYG 94
I L S ++I E + I E + D+I +++
Sbjct: 71 IKVLVKHSYISKVRSKIDERNTYISISEE---QREKIAERVTLFDQIIKQFN 119
>d1lnza1 b.117.1.1 (A:1-157) Obg GTP-binding protein N-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 157
Score = 24.6 bits (53), Expect = 5.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 90 RQKYGKGRGGEDGGDGYNGGGV 111
R++ +GG GGDG GG V
Sbjct: 23 RREKYVPKGGPAGGDGGKGGDV 44
>d1q5fa_ d.24.1.1 (A:) Type IVb pilin PilS {Salmonella typhi
[TaxId: 90370]}
Length = 156
Score = 24.2 bits (52), Expect = 6.3
Identities = 10/53 (18%), Positives = 16/53 (30%), Gaps = 2/53 (3%)
Query: 6 QQLSNFKRFRGGPNDVELRLLIPSRVA--GSVIGKGGSNIARLRNDFKASVTV 56
+ + LI + A +V G S A L N + + V
Sbjct: 23 GMMKGVDGYAFTSGAKMTDTLIQAGAAKGMTVSGDPASGSATLWNSWGGQIVV 75
>d1rfma_ c.122.1.1 (A:) L-sulfolactate dehydrogenase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 344
Score = 24.7 bits (53), Expect = 6.5
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 43 IARLRNDFKASVTVPD----CPGPERILTIFAELENGLKVIEEVLPALDEIRQKYG 94
+ L ++ K S PG E + ++G ++ + + L EI + G
Sbjct: 282 VDELLDEIKNSEPAEGFEILIPG-EIEERNKMKRKDGFEIDKNLYNQLKEICNELG 336
>d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 198
Score = 24.1 bits (52), Expect = 7.1
Identities = 6/38 (15%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 61 GPERILTIFAELENGLKVIEEVLPALDEIRQKYGKGRG 98
G R ++ G++ E+++ +++ G+G
Sbjct: 153 GRVRARKLY---NAGIRNAEDIVRHREKVASLIGRGIA 187
>d1t5ja_ a.209.1.1 (A:) Hypothetical protein MJ1187 {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 301
Score = 24.0 bits (51), Expect = 9.1
Identities = 10/48 (20%), Positives = 19/48 (39%)
Query: 87 DEIRQKYGKGRGGEDGGDGYNGGGVGGLGKDDYDIRLIVHQSQAGCII 134
+EI++ YG + + G G DD + + + +S I
Sbjct: 31 EEIKKLYGFVDSYVEPKNYLAGKLNKGEWTDDTEQAICLIKSLTKEGI 78
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.145 0.425
Gapped
Lambda K H
0.267 0.0683 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 609,872
Number of extensions: 29684
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 66
Length of query: 150
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 72
Effective length of database: 1,336,656
Effective search space: 96239232
Effective search space used: 96239232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (22.7 bits)