BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7547
(138 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q963B7|RL9_SPOFR 60S ribosomal protein L9 OS=Spodoptera frugiperda GN=RpL9 PE=2
SV=1
Length = 190
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/40 (82%), Positives = 37/40 (92%)
Query: 1 MVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
MVN RVLKVEKWFG+KKE+AAVRTVCSH+ NM+KGVTK F
Sbjct: 47 MVNPRVLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGF 86
>sp|P50882|RL9_DROME 60S ribosomal protein L9 OS=Drosophila melanogaster GN=RpL9 PE=1
SV=2
Length = 190
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/40 (80%), Positives = 35/40 (87%)
Query: 1 MVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
M +KR LKVEKWFGTKKE+AAVRTVCSHI NM+KGVT F
Sbjct: 47 MPDKRTLKVEKWFGTKKELAAVRTVCSHIENMIKGVTFGF 86
>sp|O02376|RL9_HAECO 60S ribosomal protein L9 (Fragment) OS=Haemonchus contortus PE=2
SV=1
Length = 141
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 32/39 (82%)
Query: 2 VNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
V K L+V KWFG +KEIAA+RTVCSHI NM+KGVTK F
Sbjct: 48 VGKNQLRVRKWFGVRKEIAAIRTVCSHIQNMIKGVTKGF 86
>sp|Q95Y90|RL9_CAEEL 60S ribosomal protein L9 OS=Caenorhabditis elegans GN=rpl-9 PE=1
SV=1
Length = 189
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 31/39 (79%)
Query: 2 VNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
+ K L+V KWFG +KE+AA+RTVCSHI NM+KGVT F
Sbjct: 48 IGKSTLRVRKWFGVRKELAAIRTVCSHIKNMIKGVTVGF 86
>sp|Q3SYR7|RL9_BOVIN 60S ribosomal protein L9 OS=Bos taurus GN=RPL9 PE=2 SV=1
Length = 192
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 31/37 (83%)
Query: 4 KRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
K+ L+V+KW+G +KE+A VRT+CSH+ NM+KGVT F
Sbjct: 52 KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGF 88
>sp|P17077|RL9_RAT 60S ribosomal protein L9 OS=Rattus norvegicus GN=Rpl9 PE=1 SV=1
Length = 192
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 31/37 (83%)
Query: 4 KRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
K+ L+V+KW+G +KE+A VRT+CSH+ NM+KGVT F
Sbjct: 52 KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGF 88
>sp|P51410|RL9_MOUSE 60S ribosomal protein L9 OS=Mus musculus GN=Rpl9 PE=2 SV=2
Length = 192
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 31/37 (83%)
Query: 4 KRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
K+ L+V+KW+G +KE+A VRT+CSH+ NM+KGVT F
Sbjct: 52 KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGF 88
>sp|P32969|RL9_HUMAN 60S ribosomal protein L9 OS=Homo sapiens GN=RPL9 PE=1 SV=1
Length = 192
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 31/37 (83%)
Query: 4 KRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
K+ L+V+KW+G +KE+A VRT+CSH+ NM+KGVT F
Sbjct: 52 KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGF 88
>sp|Q5IFJ7|RL9_MACFA 60S ribosomal protein L9 OS=Macaca fascicularis GN=RPL9 PE=2 SV=1
Length = 192
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 31/37 (83%)
Query: 4 KRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
K+ L+V+KW+G +KE+A +RT+CSH+ NM+KGVT F
Sbjct: 52 KKRLRVDKWWGNRKELATIRTICSHVQNMIKGVTLGF 88
>sp|Q90YW0|RL9_ICTPU 60S ribosomal protein L9 OS=Ictalurus punctatus GN=rpl9 PE=2 SV=1
Length = 192
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 7 LKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTS 66
L+V+KW+G +KE+A VRT+CSH+ NM+KGVT F R R Y+ N + T
Sbjct: 55 LRVDKWWGNRKELATVRTICSHVQNMIKGVTLGF-----RYKMRSVYAHFPINVVIQETG 109
Query: 67 SYPSI 71
S I
Sbjct: 110 SLVEI 114
>sp|Q5R9Q7|RL9_PONAB 60S ribosomal protein L9 OS=Pongo abelii GN=RPL9 PE=2 SV=1
Length = 192
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 31/37 (83%)
Query: 4 KRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
K+ L+V++W+G +KE+A VRT+CSH+ NM+KGVT F
Sbjct: 52 KKRLRVDEWWGNRKELATVRTICSHVQNMIKGVTLGF 88
>sp|P49210|RL9_ORYSJ 60S ribosomal protein L9 OS=Oryza sativa subsp. japonica GN=RPL9
PE=2 SV=3
Length = 190
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 28/36 (77%)
Query: 5 RVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
R L+V+ WFGT++ +AA+RT SH+ N++ GVTK +
Sbjct: 52 RKLQVDAWFGTRRTMAAIRTAISHVQNLITGVTKGY 87
>sp|P30707|RL9_PEA 60S ribosomal protein L9 OS=Pisum sativum GN=RPL9 PE=2 SV=1
Length = 193
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 28/37 (75%)
Query: 4 KRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
K+ LK++ WFG++K AA+RT SH+ N++ GVTK F
Sbjct: 54 KKKLKIDAWFGSRKTSAAIRTALSHVENLITGVTKGF 90
>sp|Q9SZX9|RL92_ARATH 60S ribosomal protein L9-2 OS=Arabidopsis thaliana GN=RPL9D PE=2
SV=1
Length = 194
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 28/37 (75%)
Query: 4 KRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
KR LK++ WFG++K A++RT SH+ N++ GVT+ F
Sbjct: 55 KRQLKIDSWFGSRKTSASIRTALSHVDNLIAGVTQGF 91
>sp|P49209|RL91_ARATH 60S ribosomal protein L9-1 OS=Arabidopsis thaliana GN=RPL9B PE=2
SV=3
Length = 194
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 28/37 (75%)
Query: 4 KRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
K+ LK++ WFGT+K A++RT SH+ N++ GVT+ F
Sbjct: 55 KKKLKIDSWFGTRKTSASIRTALSHVDNLISGVTRGF 91
>sp|Q54XI5|RL9_DICDI 60S ribosomal protein L9 OS=Dictyostelium discoideum GN=rpl9 PE=1
SV=2
Length = 188
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 29/40 (72%)
Query: 1 MVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
+V K+ L V+ WFG +K+IA ++T+ S I NM+ GVTK +
Sbjct: 47 LVGKKELTVDLWFGNRKQIACIKTITSIIENMITGVTKGY 86
>sp|B6YSN0|RL6_THEON 50S ribosomal protein L6P OS=Thermococcus onnurineus (strain NA1)
GN=rpl6p PE=3 SV=1
Length = 184
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 11 KWFGTKKEIAAVRTVCSHISNMLKGVTKDFT 41
K F KK+IA RT +HI+NM+KGVT+ FT
Sbjct: 57 KEFPRKKDIAIARTFKAHIANMIKGVTEGFT 87
>sp|C5A269|RL6_THEGJ 50S ribosomal protein L6P OS=Thermococcus gammatolerans (strain
DSM 15229 / JCM 11827 / EJ3) GN=rpl6p PE=3 SV=1
Length = 184
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 9 VEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFT 41
V K F KK+IA RT +HI+NM+KGVT+ FT
Sbjct: 55 VYKEFPRKKDIAIARTFKAHINNMIKGVTEGFT 87
>sp|Q5JJG4|RL6_PYRKO 50S ribosomal protein L6P OS=Pyrococcus kodakaraensis (strain
ATCC BAA-918 / JCM 12380 / KOD1) GN=rpl6p PE=3 SV=1
Length = 184
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 11 KWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
K F KK++A VRT +HI+NM+KGVT+ F
Sbjct: 57 KEFPRKKDVAIVRTFKAHINNMIKGVTEGF 86
>sp|O59433|RL6_PYRHO 50S ribosomal protein L6P OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rpl6p PE=3 SV=2
Length = 184
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 13 FGTKKEIAAVRTVCSHISNMLKGVTKDFT 41
F +K++A VRT +HI+NM+KGVT+ FT
Sbjct: 59 FPRRKDVAIVRTFKAHINNMIKGVTEGFT 87
>sp|Q9V1V1|RL6_PYRAB 50S ribosomal protein L6P OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=rpl6p PE=3 SV=1
Length = 184
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 13 FGTKKEIAAVRTVCSHISNMLKGVTKDFT 41
F +K++A VRT +HI+NM+KGVT+ FT
Sbjct: 59 FPRRKDVAIVRTFKAHINNMIKGVTEGFT 87
>sp|Q8U015|RL6_PYRFU 50S ribosomal protein L6P OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpl6p PE=1 SV=1
Length = 184
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 13 FGTKKEIAAVRTVCSHISNMLKGVTKDFT 41
F +K++A RT +HI NM+KGVT+ FT
Sbjct: 59 FPRRKDVAIARTFAAHIRNMIKGVTEGFT 87
>sp|P51401|RL9B_YEAST 60S ribosomal protein L9-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL9B PE=1 SV=1
Length = 191
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 2 VNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
VN +++KV G +K +AA+RTV S + NM+ GVTK +
Sbjct: 48 VNNQLIKVAVHNGDRKHVAALRTVKSLVDNMITGVTKGY 86
>sp|P05738|RL9A_YEAST 60S ribosomal protein L9-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL9A PE=1 SV=2
Length = 191
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 2 VNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
VN +++KV G +K +AA+RTV S + NM+ GVTK +
Sbjct: 48 VNNQLIKVAVHNGGRKHVAALRTVKSLVDNMITGVTKGY 86
>sp|A3DNC3|RL6_STAMF 50S ribosomal protein L6P OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=rpl6p PE=3 SV=1
Length = 185
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 9 VEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
VE +F +++ A V T+ SHI NM+KGV K +
Sbjct: 56 VETFFADRRKKALVGTIASHIENMIKGVLKGY 87
>sp|A2BMD5|RL6_HYPBU 50S ribosomal protein L6P OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=rpl6p PE=3 SV=1
Length = 186
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 9 VEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
VE +F ++ A V T+ +HI NM+ GVTK F
Sbjct: 60 VEAYFANRRVKALVGTIAAHIENMITGVTKGF 91
>sp|Q22AX5|RL9_TETTS 60S ribosomal protein L9 OS=Tetrahymena thermophila (strain
SB210) GN=RPL9 PE=1 SV=1
Length = 188
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 25/34 (73%)
Query: 7 LKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
+K++ W ++KE A ++++ S I NM++GVT+ +
Sbjct: 53 VKLQIWQASRKERAVLQSIASQIKNMIRGVTEGY 86
>sp|A8AC04|RL6_IGNH4 50S ribosomal protein L6P OS=Ignicoccus hospitalis (strain KIN4/I
/ DSM 18386 / JCM 14125) GN=rpl6p PE=3 SV=1
Length = 186
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
K+VL VE +F +K A V TV +HI NM+ GVTK +
Sbjct: 55 KKQVL-VETFFANRKRKALVNTVAAHIKNMITGVTKGW 91
>sp|O26127|RL6_METTH 50S ribosomal protein L6P OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpl6p PE=3 SV=1
Length = 177
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
Query: 3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
+K VL+V+ F KK+ A + TV +HISNM+ GVT+ F
Sbjct: 50 DKVVLEVK--FPKKKDKAMIGTVRAHISNMITGVTEGF 85
>sp|A6UQ60|RL6_METVS 50S ribosomal protein L6P OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=rpl6p PE=3 SV=1
Length = 182
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 1 MVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
M N++V+ VE F K + A V T SHI NM+KGV++ F
Sbjct: 48 MENEKVV-VESTFPKKNQTAMVGTYRSHIQNMIKGVSEGF 86
>sp|P14030|RL6_METVA 50S ribosomal protein L6P OS=Methanococcus vannielii GN=rpl6p
PE=3 SV=1
Length = 182
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 1 MVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
M N++V+ VE F K + A V T SHI NM+KGV++ F
Sbjct: 48 MENEKVV-VESTFPKKNQTAMVGTYRSHIQNMIKGVSEGF 86
>sp|Q74MR6|RL6_NANEQ 50S ribosomal protein L6P OS=Nanoarchaeum equitans (strain
Kin4-M) GN=rpl6p PE=3 SV=1
Length = 192
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 2 VNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFT 41
VN + +E +F T++E + T SHI NML+GV F
Sbjct: 47 VNDNKIILETYFATRREKRLINTWRSHIKNMLEGVQNPFV 86
>sp|B8D5V4|RL6_DESK1 50S ribosomal protein L6P OS=Desulfurococcus kamchatkensis
(strain 1221n / DSM 18924) GN=rpl6p PE=3 SV=1
Length = 184
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 2 VNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
+ RV+ VE + +K+ A V T+ +HI NM+ GV + +
Sbjct: 49 LEDRVVIVETFVADRKQKALVGTIAAHIRNMITGVVRGY 87
>sp|P54042|RL6_METJA 50S ribosomal protein L6P OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 /
NBRC 100440) GN=rpl6p PE=3 SV=1
Length = 182
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 16 KKEIAAVRTVCSHISNMLKGVTKDFT 41
+K+ A V T+ +HI+NM+KGVT+ FT
Sbjct: 62 RKDKAMVGTIRAHINNMIKGVTEGFT 87
>sp|Q10232|RL9A_SCHPO 60S ribosomal protein L9-A OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl9a PE=3 SV=1
Length = 190
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 12 WFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
W G++K A +R+V S I+NM+ GVT+ F
Sbjct: 58 WHGSRKHNACIRSVYSIINNMIIGVTQGF 86
>sp|Q2NFX3|RL6_METST 50S ribosomal protein L6P OS=Methanosphaera stadtmanae (strain
DSM 3091) GN=rpl6p PE=3 SV=1
Length = 184
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 9 VEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFT 41
V+ F KK+ A V T+ SHISNM+ GV FT
Sbjct: 55 VKVAFPNKKDKAMVGTIRSHISNMIYGVDHGFT 87
>sp|Q95RU0|CUE_DROME Protein cueball OS=Drosophila melanogaster GN=cue PE=1 SV=1
Length = 644
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 9/51 (17%)
Query: 45 NRCLSRRCYS-CAGGNCSYKMTSSYPSIICPPGY-------DMCQSLCYNG 87
+RC R C++ C G C + YP C PG+ +C LC NG
Sbjct: 395 SRCEIRECHNYCVHGTCQMSELA-YPKCYCQPGFKGERCELSVCSGLCLNG 444
>sp|O74905|RL9B_SCHPO 60S ribosomal protein L9-B OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl9b PE=3 SV=1
Length = 189
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 12 WFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
W G++K A +RT S I+NM+ GVT+ F
Sbjct: 58 WHGSRKHNACIRTAYSIINNMIIGVTQGF 86
>sp|B7KFG9|LPXD_CYAP7 UDP-3-O-acylglucosamine N-acyltransferase OS=Cyanothece sp. (strain
PCC 7424) GN=lpxD PE=3 SV=1
Length = 349
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 68 YPSIICPPGYDMCQSLCYNGTINVHRCTNIAHDCTSMRNTVISTNGSGF 116
+P+++ PG + +G +H T I DC VI + G GF
Sbjct: 146 HPNVVIYPGVTLGDRTILHGNCTIHERTVIGADCVIHSGAVIGSEGFGF 194
>sp|A0B9V4|RL6_METTP 50S ribosomal protein L6P OS=Methanosaeta thermophila (strain DSM
6194 / PT) GN=rpl6p PE=3 SV=1
Length = 176
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 16 KKEIAAVRTVCSHISNMLKGVTKDFT 41
K+ +A V T+ +HI NM++GVT F
Sbjct: 60 KQHLAMVGTIAAHIKNMIRGVTDGFE 85
>sp|B4PD96|CUE_DROYA Protein cueball OS=Drosophila yakuba GN=cue PE=3 SV=1
Length = 644
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
Query: 45 NRCLSRRCYS-CAGGNCSYKMTSSYPSIICPPGY-------DMCQSLCYNG 87
+RC R C++ C G C S+YP C PG+ +C LC NG
Sbjct: 395 SRCEIRECHNYCVHGTCQMS-ESAYPKCYCQPGFTGERCEVSVCAGLCLNG 444
>sp|Q9YF91|RL6_AERPE 50S ribosomal protein L6P OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rpl6p
PE=3 SV=1
Length = 182
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 9 VEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
VE +F ++ A V + HI NM+KGV F
Sbjct: 56 VESFFAKARQRALVGAIAGHIRNMIKGVQGGF 87
>sp|B3NBB6|CUE_DROER Protein cueball OS=Drosophila erecta GN=cue PE=3 SV=1
Length = 644
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
Query: 45 NRCLSRRCYS-CAGGNCSYKMTSSYPSIICPPGY-------DMCQSLCYNG 87
+RC R C++ C G C S+YP C PG+ +C LC NG
Sbjct: 395 SRCEIRECHNYCVHGTCQMS-ESAYPKCYCQPGFTGERCEVSVCAGLCLNG 444
>sp|A5UL72|RL6_METS3 50S ribosomal protein L6P OS=Methanobrevibacter smithii (strain
PS / ATCC 35061 / DSM 861) GN=rpl6p PE=3 SV=1
Length = 178
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 9 VEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
+E F KK+ A + T +HISNM+ GVT F
Sbjct: 55 LETSFPRKKDKAMIGTTKAHISNMITGVTDGF 86
>sp|P35448|TSP1_XENLA Thrombospondin-1 OS=Xenopus laevis GN=thbs1 PE=2 SV=1
Length = 1173
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 18/64 (28%)
Query: 47 CLSRRCYSCAGGNCSYKMTSSYPSIICPPGY----------DMCQSL---CYNGTIN-VH 92
CLS C+ AG C+ + S+ CPPGY D C+ + C+ T+N VH
Sbjct: 554 CLSNPCF--AGVKCTSFIDGSWKCGSCPPGYRGNGITCKDIDECKEVPDACF--TLNGVH 609
Query: 93 RCTN 96
RC N
Sbjct: 610 RCEN 613
>sp|Q12ZT5|RL6_METBU 50S ribosomal protein L6P OS=Methanococcoides burtonii (strain
DSM 6242) GN=rpl6p PE=3 SV=1
Length = 177
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 16 KKEIAAVRTVCSHISNMLKGVTKDF 40
KK+ A V T SHI+NM+KGV F
Sbjct: 60 KKQKAMVGTYTSHITNMMKGVVDGF 84
>sp|B3M8G0|CUE_DROAN Protein cueball OS=Drosophila ananassae GN=cue PE=3 SV=1
Length = 643
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 9/51 (17%)
Query: 45 NRCLSRRCYS-CAGGNCSYKMTSSYPSIICPPGY-------DMCQSLCYNG 87
+RC R C++ C G C +YP C PG+ C LC NG
Sbjct: 394 SRCEIRECHNYCVHGTCQMS-DLAYPKCYCQPGFTGERCEVSNCAGLCLNG 443
>sp|A9A9P8|RL6_METM6 50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C6
/ ATCC BAA-1332) GN=rpl6p PE=3 SV=1
Length = 182
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 13 FGTKKEIAAVRTVCSHISNMLKGVTKDF 40
F K + A V T SHI NM+KGVT F
Sbjct: 59 FPRKAQTAIVGTYRSHIQNMIKGVTDGF 86
>sp|Q10VF5|LPXD_TRIEI UDP-3-O-acylglucosamine N-acyltransferase OS=Trichodesmium
erythraeum (strain IMS101) GN=lpxD PE=3 SV=1
Length = 345
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 68 YPSIICPPGYDMCQSLCYNGTINVHRCTNIAHDCTSMRNTVISTNGSGF 116
YP+++ P ++ ++ N ++H + I C VI G GF
Sbjct: 146 YPNVVIYPNVEIGENTILNANCSIHERSQIGKGCVIHSGAVIGGEGFGF 194
>sp|Q9UX91|RL6_SULSO 50S ribosomal protein L6P OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=rpl6p PE=3 SV=1
Length = 181
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40
NK VL E F +++ A ++ SHI NM+ GVTK +
Sbjct: 51 NKIVL--ETTFANRRKKAVFYSIVSHIKNMITGVTKGY 86
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.132 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,872,291
Number of Sequences: 539616
Number of extensions: 1785910
Number of successful extensions: 3919
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 3856
Number of HSP's gapped (non-prelim): 90
length of query: 138
length of database: 191,569,459
effective HSP length: 103
effective length of query: 35
effective length of database: 135,989,011
effective search space: 4759615385
effective search space used: 4759615385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)