Query psy7547
Match_columns 138
No_of_seqs 127 out of 319
Neff 1.7
Searched_HMMs 46136
Date Fri Aug 16 21:10:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7547.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7547hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00179 60S ribosomal protein 99.4 7.9E-14 1.7E-18 108.7 2.6 59 3-81 49-107 (189)
2 PTZ00027 60S ribosomal protein 99.4 2.7E-13 5.9E-18 105.7 3.0 55 3-77 50-104 (190)
3 PRK05498 rplF 50S ribosomal pr 99.3 9.4E-13 2E-17 100.5 2.6 56 3-80 46-101 (178)
4 PRK05518 rpl6p 50S ribosomal p 99.3 1.4E-12 3E-17 101.2 2.4 59 3-81 48-106 (180)
5 TIGR03653 arch_L6P archaeal ri 99.2 2.4E-12 5.2E-17 98.8 2.3 58 3-80 42-99 (170)
6 TIGR03654 L6_bact ribosomal pr 99.2 3.2E-12 6.9E-17 97.6 2.7 56 3-80 45-100 (175)
7 KOG3255|consensus 99.2 2.6E-13 5.5E-18 106.9 -3.7 55 6-80 54-108 (179)
8 COG0097 RplF Ribosomal protein 99.2 6.8E-12 1.5E-16 98.9 3.9 54 4-79 48-101 (178)
9 CHL00140 rpl6 ribosomal protei 99.2 9.7E-12 2.1E-16 95.3 3.0 55 3-79 46-100 (178)
10 PF00347 Ribosomal_L6: Ribosom 98.5 2.6E-08 5.5E-13 64.3 -0.4 37 3-39 38-77 (77)
11 KOG3254|consensus 94.7 0.012 2.6E-07 48.8 0.8 33 8-40 84-116 (211)
12 PF09151 DUF1936: Domain of un 52.4 8.9 0.00019 24.5 1.3 15 86-100 19-33 (36)
13 PF15135 UPF0515: Uncharacteri 30.5 22 0.00047 31.0 0.6 52 44-107 169-222 (278)
14 smart00037 CNX Connexin homolo 29.6 33 0.00072 21.7 1.2 21 69-89 8-28 (34)
15 cd00117 LU Ly-6 antigen / uPA 24.2 73 0.0016 20.3 2.1 12 51-62 2-16 (79)
16 PF12851 Tet_JBP: Oxygenase do 23.5 84 0.0018 24.0 2.7 40 86-125 78-120 (171)
No 1
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=99.41 E-value=7.9e-14 Score=108.68 Aligned_cols=59 Identities=29% Similarity=0.537 Sum_probs=55.1
Q ss_pred cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccceeeeeccccccceeccCCCceeeEEeeeeeeeeeCCCcCCcc
Q psy7547 3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGYDMCQ 81 (138)
Q Consensus 3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF~~~~~~~~~~~~~~~~~~~~sYKMksvYaHFPi~vkvdg~~ 81 (138)
+++.|.|..|.++++..|..+|++|||+||++||++|| +|+|+.+|.||||.+.++|..
T Consensus 49 ~~~~I~v~~~~~~kk~~al~Gt~rslI~NMI~GVt~GF--------------------~k~L~ivgvgyp~ra~v~g~~ 107 (189)
T PTZ00179 49 KNRTFTAVRWFGSKIPNSTINTALSHVRNMITGVTKGF--------------------RFKVRFAYAHFPISVSVENQL 107 (189)
T ss_pred cCCEEEEEeCCCCHHHHHHHHHHHHHHHHHhhhhcCCE--------------------EEEEEEEEeCcceEEEEcCCE
Confidence 35689999999999999999999999999999999999 999999999999999998843
No 2
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=99.37 E-value=2.7e-13 Score=105.75 Aligned_cols=55 Identities=47% Similarity=0.839 Sum_probs=52.3
Q ss_pred cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccceeeeeccccccceeccCCCceeeEEeeeeeeeeeCCCc
Q psy7547 3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGY 77 (138)
Q Consensus 3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF~~~~~~~~~~~~~~~~~~~~sYKMksvYaHFPi~vkv 77 (138)
.++.|.|+.|+++++..|..+|++|||+||++||++|| +|+|+.+|.|||+.+++
T Consensus 50 ~~~~i~v~~~~~~~k~~a~~Gt~rslI~NmI~GVt~Gf--------------------~~~LeivGvGyra~~~v 104 (190)
T PTZ00027 50 DGKYIKVEMWFGTPSHLACIRTVCSHIKNMMTGVTKKF--------------------QYKMRLVYAHFPINSNI 104 (190)
T ss_pred CCCEEEEEeCCCCHHHHHHHHHHHHHHHHHhhhhcCCE--------------------EEEEEEEEeeeeEEEEE
Confidence 46789999999999999999999999999999999999 99999999999999776
No 3
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=99.30 E-value=9.4e-13 Score=100.46 Aligned_cols=56 Identities=23% Similarity=0.131 Sum_probs=50.5
Q ss_pred cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccceeeeeccccccceeccCCCceeeEEeeeeeeeeeCCCcCCc
Q psy7547 3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGYDMC 80 (138)
Q Consensus 3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF~~~~~~~~~~~~~~~~~~~~sYKMksvYaHFPi~vkvdg~ 80 (138)
+++.|.|+.|+++|++.|+++|++|||+||++||++|| +|+|+.+|.||-+ .+++.
T Consensus 46 ~~~~i~v~~~~~~k~~~a~~gt~~s~I~Nmi~GVt~Gf--------------------~~~L~lvGvgyrv--~~~g~ 101 (178)
T PRK05498 46 EDNEITVTRPDDSKKARALHGTTRALINNMVVGVTEGF--------------------EKKLEIVGVGYRA--QVKGK 101 (178)
T ss_pred ECCEEEEEcCCCCHHHHHHHHHHHHHHHHHhhhcCCCe--------------------EEEEEEEeEEEEE--EEeCC
Confidence 45789999999999999999999999999999999999 9999999999944 55553
No 4
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=99.28 E-value=1.4e-12 Score=101.25 Aligned_cols=59 Identities=34% Similarity=0.437 Sum_probs=55.0
Q ss_pred cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccceeeeeccccccceeccCCCceeeEEeeeeeeeeeCCCcCCcc
Q psy7547 3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGYDMCQ 81 (138)
Q Consensus 3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF~~~~~~~~~~~~~~~~~~~~sYKMksvYaHFPi~vkvdg~~ 81 (138)
+++.|.|..|.++|+..|+.+|++|||+||++||++|| +|+|+.++.|||+...++|..
T Consensus 48 ~~~~i~v~~~~~~kk~ra~~gt~rslI~NmI~GVt~Gf--------------------~~~LelvGvGypira~~~g~~ 106 (180)
T PRK05518 48 EDGKVVIETEFARKKTKAMVGTFASHIKNMIKGVTEGF--------------------EYKLKIVYSHFPMQVKVQGNE 106 (180)
T ss_pred ECCEEEEEECCCCHHHHHHHHHHHHHHHhhheecccce--------------------EEEEEEEecCccEEEEEcCCE
Confidence 46789999999999999999999999999999999999 999999999999998888743
No 5
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=99.25 E-value=2.4e-12 Score=98.83 Aligned_cols=58 Identities=36% Similarity=0.446 Sum_probs=54.2
Q ss_pred cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccceeeeeccccccceeccCCCceeeEEeeeeeeeeeCCCcCCc
Q psy7547 3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGYDMC 80 (138)
Q Consensus 3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF~~~~~~~~~~~~~~~~~~~~sYKMksvYaHFPi~vkvdg~ 80 (138)
+++.|.|+.|.+.|+..|+.+|++|||+||++|||+|| +|+|+.++.|||+.+.++|.
T Consensus 42 ~~~~i~v~~~~~~k~~~a~~gt~rsli~NmI~GVt~Gf--------------------~~~LeivGvGy~~ra~~~g~ 99 (170)
T TIGR03653 42 EDGKVVIETDFARKKDKAMVGTYRSHIKNMIKGVTEGF--------------------EYKMKVVYSHFPMQVKVEGN 99 (170)
T ss_pred eCCEEEEEeCCCCHHHHHHHHHHHHHHHhheeecccCe--------------------EEEEEEEeccccEEEEEcCC
Confidence 46789999999999999999999999999999999999 99999999999998877774
No 6
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=99.24 E-value=3.2e-12 Score=97.56 Aligned_cols=56 Identities=21% Similarity=0.140 Sum_probs=50.5
Q ss_pred cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccceeeeeccccccceeccCCCceeeEEeeeeeeeeeCCCcCCc
Q psy7547 3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGYDMC 80 (138)
Q Consensus 3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF~~~~~~~~~~~~~~~~~~~~sYKMksvYaHFPi~vkvdg~ 80 (138)
+++.|.|+.|+++++..|+++|++|||+||++||++|| +|+|+.+|.|| .+.+++.
T Consensus 45 ~~~~i~v~~~~~~kk~~a~~gt~~s~i~Nmi~GVt~Gf--------------------~~~L~lvGvgy--rv~~~g~ 100 (175)
T TIGR03654 45 EDGQLTVSRPNDSKEARALHGTTRALINNMVIGVSEGF--------------------EKKLEIVGVGY--RAQLQGK 100 (175)
T ss_pred ECCEEEEEecCCCHHHHHHHHHHHHHHHHHhheeccCc--------------------EEEEEEEEEEE--EEEEeCC
Confidence 46789999999999999999999999999999999999 99999999999 4455553
No 7
>KOG3255|consensus
Probab=99.24 E-value=2.6e-13 Score=106.89 Aligned_cols=55 Identities=44% Similarity=0.693 Sum_probs=51.5
Q ss_pred EEEEEEEcCCcceeeeehhHHHHHhhhhcccccceeeeeccccccceeccCCCceeeEEeeeeeeeeeCCCcCCc
Q psy7547 6 VLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGYDMC 80 (138)
Q Consensus 6 ~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF~~~~~~~~~~~~~~~~~~~~sYKMksvYaHFPi~vkvdg~ 80 (138)
.+++++|||.||+.|+++|++|||+||++||+.|| .|||+.+|+|||++...+..
T Consensus 54 ~ik~~~~~~~Rk~va~l~t~~s~ien~i~gvt~~~--------------------i~k~~av~a~f~in~~~~~~ 108 (179)
T KOG3255|consen 54 RLKIDKWWGTRKGVACLRTVVSHIENCIKGVTIGF--------------------IYKMRAVYAHFPINTVIQEN 108 (179)
T ss_pred hhhhhhhhccchhHHHHHHHHHHHHHHHhcchHHH--------------------HHHhhhHHhhccccceecCC
Confidence 48999999999999999999999999999999999 99999999999988766553
No 8
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=6.8e-12 Score=98.95 Aligned_cols=54 Identities=30% Similarity=0.260 Sum_probs=46.7
Q ss_pred CcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccceeeeeccccccceeccCCCceeeEEeeeeeeeeeCCCcCC
Q psy7547 4 KRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGYDM 79 (138)
Q Consensus 4 kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF~~~~~~~~~~~~~~~~~~~~sYKMksvYaHFPi~vkvdg 79 (138)
++.+.+..|..+++. |+++|+.|||+||++|||+|| +|+|+.+|.|||+++ ..+
T Consensus 48 ~~~~vv~~~~~k~~~-a~~Gt~rali~Nmv~GVteGf--------------------~~kL~ivgvgyra~v-~g~ 101 (178)
T COG0097 48 DNILVVRPVDGKRKR-ALHGTVRALINNMVKGVTEGF--------------------EKKLEIVGVGYRAQV-VGG 101 (178)
T ss_pred CCEEEEeecccchhH-HHHHHHHHHHHHHheecccce--------------------EEEEEEEEecceeEE-ecc
Confidence 455667777775555 999999999999999999999 999999999999999 555
No 9
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=99.19 E-value=9.7e-12 Score=95.32 Aligned_cols=55 Identities=24% Similarity=0.122 Sum_probs=49.6
Q ss_pred cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccceeeeeccccccceeccCCCceeeEEeeeeeeeeeCCCcCC
Q psy7547 3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGYDM 79 (138)
Q Consensus 3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF~~~~~~~~~~~~~~~~~~~~sYKMksvYaHFPi~vkvdg 79 (138)
+++.|.|+.|+++|+..|+++|++|||+||++||++|| +|+|+.+|.||-. .+++
T Consensus 46 ~~~~i~v~~~~~~k~~~a~~gt~~slI~Nmi~GVt~Gf--------------------~~~L~lvGvGyr~--~~~g 100 (178)
T CHL00140 46 QDNSLFVSKKDESKKARALHGLYRTLINNMVIGVSEGF--------------------EKKLELQGVGYRA--QVQG 100 (178)
T ss_pred eCCEEEEEcCCCCHHHHHHHHHHHHHHHHHHhhcccCc--------------------eEEEEEEEEEEEE--EEeC
Confidence 45789999999999999999999999999999999999 9999999999544 4455
No 10
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=98.46 E-value=2.6e-08 Score=64.28 Aligned_cols=37 Identities=38% Similarity=0.456 Sum_probs=34.5
Q ss_pred cCcEEEEEEEcCCcceee---eehhHHHHHhhhhcccccc
Q psy7547 3 NKRVLKVEKWFGTKKEIA---AVRTVCSHISNMLKGVTKD 39 (138)
Q Consensus 3 ~kr~LkVekwfgtKKeiA---~VrTvcSHIsNMiKGVTkg 39 (138)
+++.+.+..|.+.+|+.| .++|+++|+.||++||++|
T Consensus 38 ~~~~~~~~~~~~~~k~~~~~a~~gt~rsli~n~i~GV~~G 77 (77)
T PF00347_consen 38 EDNKITVSVLSGNKKQKAFAAMIGTYRSLINNMIKGVTEG 77 (77)
T ss_dssp ETTSEEEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHTE
T ss_pred CCCceEEEECcccHhHhhhHHhhccccccccCceeEECCC
Confidence 357899999999999999 9999999999999999987
No 11
>KOG3254|consensus
Probab=94.70 E-value=0.012 Score=48.75 Aligned_cols=33 Identities=36% Similarity=0.260 Sum_probs=28.9
Q ss_pred EEEEEcCCcceeeeehhHHHHHhhhhcccccce
Q psy7547 8 KVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40 (138)
Q Consensus 8 kVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF 40 (138)
...+--.+||+.++.+|+.+.+.||++|||+||
T Consensus 84 ~~~k~~etkkqr~mwgt~R~l~~N~v~GVt~g~ 116 (211)
T KOG3254|consen 84 ANIKKQETKKQRAMWGTFRALLANNVKGVTMGF 116 (211)
T ss_pred eeecchhhHHHHHHHHHHHHHHhccchhhhhhh
Confidence 334445689999999999999999999999999
No 12
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=52.39 E-value=8.9 Score=24.50 Aligned_cols=15 Identities=53% Similarity=0.891 Sum_probs=10.0
Q ss_pred eeeEEeEeecccccc
Q psy7547 86 NGTINVHRCTNIAHD 100 (138)
Q Consensus 86 ~~tInv~~~~~~~~~ 100 (138)
.|+|.|.||.|-|-|
T Consensus 19 kgeikvfrcsnpacd 33 (36)
T PF09151_consen 19 KGEIKVFRCSNPACD 33 (36)
T ss_dssp TS-EEEEEES-TT--
T ss_pred CCcEEEEEcCCCccc
Confidence 589999999998866
No 13
>PF15135 UPF0515: Uncharacterised protein UPF0515
Probab=30.47 E-value=22 Score=30.97 Aligned_cols=52 Identities=33% Similarity=0.659 Sum_probs=36.7
Q ss_pred eccccccceeccCCCceeeEEeeeeeeeeeCCCcCCc--cceeeeeeEEeEeecccccccccccce
Q psy7547 44 TNRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGYDMC--QSLCYNGTINVHRCTNIAHDCTSMRNT 107 (138)
Q Consensus 44 ~~~~~~~~~~~~~~~~~sYKMksvYaHFPi~vkvdg~--~s~cy~~tInv~~~~~~~~~~~~~~~~ 107 (138)
...=.+.-||.|.. .+||+.++||..|-. +.++. +-|-|.|. |+||-.-|.-
T Consensus 169 ~qm~v~sPCy~C~~--------~v~P~~IlPPr~~R~~~~~~~r--s~~~HSC~--ae~Cynr~ep 222 (278)
T PF15135_consen 169 AQMGVPSPCYGCGN--------PVYPSRILPPRWDRSHMRPGRR--SRNTHSCF--AEDCYNRREP 222 (278)
T ss_pred hhcCCCCCccCCCC--------ccCcccccCCCcCccccCCCcc--cccccccc--hhhhccccCC
Confidence 33445677888873 469999999997765 45443 45778887 8888765543
No 14
>smart00037 CNX Connexin homologues. Connexin channels participate in the regulation of signaling between developing and differentiated cell types.
Probab=29.56 E-value=33 Score=21.69 Aligned_cols=21 Identities=19% Similarity=0.743 Sum_probs=17.8
Q ss_pred eeeeeCCCcCCccceeeeeeE
Q psy7547 69 PSIICPPGYDMCQSLCYNGTI 89 (138)
Q Consensus 69 aHFPi~vkvdg~~s~cy~~tI 89 (138)
..|.|+-.-.||+..|||...
T Consensus 8 ~~FvCnT~QPGC~nvCyD~~f 28 (34)
T smart00037 8 SDFVCNTQQPGCENVCYDQAF 28 (34)
T ss_pred hhceecCCCCCccceeccccc
Confidence 468899999999999999753
No 15
>cd00117 LU Ly-6 antigen / uPA receptor -like domain; occurs singly in GPI-linked cell-surface glycoproteins (Ly-6 family,CD59, thymocyte B cell antigen, Sgp-2) or as three-fold repeated domain in urokinase-type plasminogen activator receptor. Topology of these domains is similar to that of snake venom neurotoxins.
Probab=24.19 E-value=73 Score=20.32 Aligned_cols=12 Identities=58% Similarity=1.489 Sum_probs=8.9
Q ss_pred ceeccCC---Cceee
Q psy7547 51 RCYSCAG---GNCSY 62 (138)
Q Consensus 51 ~~~~~~~---~~~sY 62 (138)
.||+|.+ ++|.=
T Consensus 2 ~C~~C~~~~~~~C~~ 16 (79)
T cd00117 2 ECYSCTGVSTSSCST 16 (79)
T ss_pred ccCcCCCCCCCCCCC
Confidence 6999977 67753
No 16
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=23.54 E-value=84 Score=24.01 Aligned_cols=40 Identities=30% Similarity=0.505 Sum_probs=32.8
Q ss_pred eeeEEeEeecccccccccccc--eEEeecCCc-eeeccccCcc
Q psy7547 86 NGTINVHRCTNIAHDCTSMRN--TVISTNGSG-FKTSSLTKPH 125 (138)
Q Consensus 86 ~~tInv~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~ 125 (138)
..+++..||+..-.|..+|.| +++.|-|.| |+.-.|.-|-
T Consensus 78 ~~sv~~nr~t~~HrD~~~~~~~~~~~~t~~~gd~~~g~l~lp~ 120 (171)
T PF12851_consen 78 GVSVISNRCTHSHRDTHNMPNGYDVLCTLGRGDYDGGRLELPG 120 (171)
T ss_pred ceEEEeecCccceecCCCCCCCeEEEEecCCccccCceEeccc
Confidence 467889999999999999977 678888887 8777776666
Done!