Query psy7547
Match_columns 138
No_of_seqs 127 out of 319
Neff 1.7
Searched_HMMs 29240
Date Fri Aug 16 21:10:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7547.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7547hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5e_H L8, RP24, YL11, 60S rib 99.6 7.1E-17 2.4E-21 124.9 0.7 56 2-77 48-103 (191)
2 3j21_F 50S ribosomal protein L 99.6 7.3E-17 2.5E-21 124.3 0.4 58 3-80 49-106 (184)
3 4a17_E RPL9, 60S ribosomal pro 99.6 2.2E-16 7.6E-21 121.9 0.7 56 3-78 49-104 (188)
4 3iz5_F 60S ribosomal protein L 99.6 3.5E-16 1.2E-20 121.0 1.4 55 3-77 50-104 (190)
5 3r8s_G 50S ribosomal protein L 99.5 2.6E-15 9E-20 114.5 1.6 53 3-75 45-97 (176)
6 3v2d_H 50S ribosomal protein L 99.5 2.4E-15 8.3E-20 115.1 0.7 56 3-80 46-101 (180)
7 1vq8_E 50S ribosomal protein L 99.5 4.6E-15 1.6E-19 114.2 0.3 58 3-80 44-101 (178)
8 2zkr_e 60S ribosomal protein L 99.3 7.4E-14 2.5E-18 107.9 -0.0 51 7-77 55-105 (192)
9 1rl6_A Protein (ribosomal prot 99.3 2.4E-13 8.2E-18 104.0 0.6 53 3-75 45-97 (177)
10 1nkw_E 50S ribosomal protein L 99.3 7.4E-13 2.5E-17 104.8 2.5 53 3-75 73-125 (212)
11 2zjr_E 50S ribosomal protein L 99.3 2.3E-13 7.9E-18 105.0 -1.2 53 3-75 46-98 (185)
12 3bbo_I Ribosomal protein L6; l 99.2 7.8E-13 2.7E-17 105.2 -1.1 54 2-75 88-141 (223)
13 2cql_A OK/SW-CL.103, 60S ribos 98.9 7.7E-11 2.6E-15 83.1 -0.5 35 6-40 61-95 (100)
14 3nyb_B Protein AIR2; polya RNA 39.9 7.4 0.00025 26.2 0.4 65 43-121 17-83 (83)
15 2k02_A Ferrous iron transport 32.4 29 0.00098 23.5 2.4 34 34-67 43-81 (87)
No 1
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H
Probab=99.60 E-value=7.1e-17 Score=124.94 Aligned_cols=56 Identities=39% Similarity=0.564 Sum_probs=53.1
Q ss_pred ccCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccceeeeeccccccceeccCCCceeeEEeeeeeeeeeCCCc
Q psy7547 2 VNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGY 77 (138)
Q Consensus 2 v~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF~~~~~~~~~~~~~~~~~~~~sYKMksvYaHFPi~vkv 77 (138)
++++.|.|+.|+++||+.|+++|++|||+||++|||+|| +|+|+++|.|||+++.+
T Consensus 48 ~~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GVt~Gf--------------------~~kL~lvgvgyri~a~v 103 (191)
T 3u5e_H 48 VNNQLIKVAVHNGGRKHVAALRTVKSLVDNMITGVTKGY--------------------KYKMRYVYAHFPINVNI 103 (191)
T ss_dssp EETTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTCE--------------------EEEEEEECSSSCCEEEE
T ss_pred ecCCeEEEEECCCCHHHHHHHHHHHHHHHhheeeeccCE--------------------EEEEEEEEEeeeEEEEE
Confidence 357899999999999999999999999999999999999 99999999999988776
No 2
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.60 E-value=7.3e-17 Score=124.27 Aligned_cols=58 Identities=31% Similarity=0.450 Sum_probs=55.3
Q ss_pred cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccceeeeeccccccceeccCCCceeeEEeeeeeeeeeCCCcCCc
Q psy7547 3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGYDMC 80 (138)
Q Consensus 3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF~~~~~~~~~~~~~~~~~~~~sYKMksvYaHFPi~vkvdg~ 80 (138)
.++.|.|+.|+++|++.|+++|++|||+||++|||+|| +|+|+++|.|||+.+.++|.
T Consensus 49 ~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GVt~Gf--------------------~~kL~lvgvgypira~~~g~ 106 (184)
T 3j21_F 49 EDGNVVIYKDFPRRKDVAIARTFAAHIRNMIKGVTEGF--------------------TYKLKVVYSHFPISVKVQGD 106 (184)
T ss_dssp ETTEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHTCE--------------------EEEEEEECSSSCCEEEEETT
T ss_pred eCCEEEEEECCCCHHHHHHHHHHHHHHHhhheeeccCe--------------------EEEEEEEEecccceEEEcCC
Confidence 45789999999999999999999999999999999999 99999999999999999874
No 3
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E
Probab=99.57 E-value=2.2e-16 Score=121.90 Aligned_cols=56 Identities=25% Similarity=0.526 Sum_probs=53.0
Q ss_pred cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccceeeeeccccccceeccCCCceeeEEeeeeeeeeeCCCcC
Q psy7547 3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGYD 78 (138)
Q Consensus 3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF~~~~~~~~~~~~~~~~~~~~sYKMksvYaHFPi~vkvd 78 (138)
+++.|.|+.|+++|++.|+++|++|||+||++|||+|| +|+|+++|.|||+++.++
T Consensus 49 ~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GVt~Gf--------------------~~kL~lvgvgyr~~~~v~ 104 (188)
T 4a17_E 49 TADNVKLQIWQASRKERAVLQSIASQIKNMIRGVTEGY--------------------KFKMKLAFAHFPIQEAVA 104 (188)
T ss_dssp BTTBCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSCE--------------------EEEEEEECSSSCCEEEEC
T ss_pred cCCeEEEEECCCCHHHHHHHHHHHHHHHhheEeeccCe--------------------EEEEEEEEEcccceEEEc
Confidence 57889999999999999999999999999999999999 999999999999887664
No 4
>3iz5_F 60S ribosomal protein L9 (L6P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_F
Probab=99.57 E-value=3.5e-16 Score=121.01 Aligned_cols=55 Identities=40% Similarity=0.745 Sum_probs=52.4
Q ss_pred cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccceeeeeccccccceeccCCCceeeEEeeeeeeeeeCCCc
Q psy7547 3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGY 77 (138)
Q Consensus 3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF~~~~~~~~~~~~~~~~~~~~sYKMksvYaHFPi~vkv 77 (138)
+++.|.|+.|+++|++.|+++|++|||+||++|||+|| +|+|+++|.|||+++.+
T Consensus 50 ~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GVt~Gf--------------------~~kL~lvgvgyr~~~~i 104 (190)
T 3iz5_F 50 GGRKLQVDAWFGTRRTMAAIRTAISHVQNLITGVTKGY--------------------RYKMRFVYAHFPINASI 104 (190)
T ss_dssp TTTEEEEEESCCCHHHHHHHHHHHHHHHHHHHHHHTCE--------------------EEEEEEECSSSCCEEEE
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHhheeeeccCE--------------------EEEEEEEEEcccceeEE
Confidence 56889999999999999999999999999999999999 99999999999988755
No 5
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ...
Probab=99.51 E-value=2.6e-15 Score=114.52 Aligned_cols=53 Identities=19% Similarity=0.144 Sum_probs=50.3
Q ss_pred cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccceeeeeccccccceeccCCCceeeEEeeeeeeeeeCC
Q psy7547 3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPP 75 (138)
Q Consensus 3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF~~~~~~~~~~~~~~~~~~~~sYKMksvYaHFPi~v 75 (138)
.++.|.|+.|+++|++.|+++|++|||+||++|||+|| +|+|+++|.||+.++
T Consensus 45 ~~~~l~v~~~~~~k~~~a~~gt~rsli~NmI~GVt~Gf--------------------~~kL~lvgvgyra~~ 97 (176)
T 3r8s_G 45 ADNTLTFGPRDGYADGWAQAGTARALLNSMVIGVTEGF--------------------TKKLQLVGVGYRAAV 97 (176)
T ss_dssp ETTEEEEECCTTCSSTHHHHHHHHHHHHHTTTHHHHCE--------------------EECEEEESTTCEEEC
T ss_pred eCCEEEEEECCCcHHHHHHHHHHHHHHHhHhhhcccCe--------------------EEEEEEeeeeeEEEe
Confidence 45789999999999999999999999999999999999 999999999999765
No 6
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Probab=99.50 E-value=2.4e-15 Score=115.06 Aligned_cols=56 Identities=16% Similarity=0.116 Sum_probs=51.4
Q ss_pred cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccceeeeeccccccceeccCCCceeeEEeeeeeeeeeCCCcCCc
Q psy7547 3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGYDMC 80 (138)
Q Consensus 3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF~~~~~~~~~~~~~~~~~~~~sYKMksvYaHFPi~vkvdg~ 80 (138)
+++.|.|+.|+++|++.|+++|++|||+||++|||+|| +|+|+++|.||+..+ +|.
T Consensus 46 ~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GVt~Gf--------------------~~kL~lvgvgyra~~--~g~ 101 (180)
T 3v2d_H 46 EEGVVRVERPSDERRHKSLHGLTRTLIANAVKGVSEGY--------------------SKELLIKGIGYRARL--VGR 101 (180)
T ss_dssp ETTEEEEECSCSCHHHHHHHHHHHHHHHHHHHHHHTCE--------------------EEEEEEESTTCEEEE--ETT
T ss_pred ECCEEEEEECCCcHHHHHHHHHHHHHHhhhEEeecCCc--------------------EEEEEEEEEeeEEEE--CCC
Confidence 46789999999999999999999999999999999999 999999999998743 553
No 7
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Probab=99.47 E-value=4.6e-15 Score=114.18 Aligned_cols=58 Identities=24% Similarity=0.318 Sum_probs=55.3
Q ss_pred cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccceeeeeccccccceeccCCCceeeEEeeeeeeeeeCCCcCCc
Q psy7547 3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGYDMC 80 (138)
Q Consensus 3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF~~~~~~~~~~~~~~~~~~~~sYKMksvYaHFPi~vkvdg~ 80 (138)
.++.|.|+.|+++|++.|+++|++|||+||++|||+|| +|+|+.+|.||||.+.++|.
T Consensus 44 ~~~~i~v~~~~~~k~~~a~~Gt~rsli~Nmi~GVt~Gf--------------------~~~L~ivGvGypira~~~g~ 101 (178)
T 1vq8_E 44 DGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGW--------------------EYGMEVFYSHFPMQVNVEGD 101 (178)
T ss_dssp ETTEEEEECSCCSHHHHHHHHHHHHHHHHHHHHHHTCE--------------------EEEEEEECSSSCCEEEEETT
T ss_pred ECCEEEEEcCCCCHHHHHHHHHHHHHHcCEEEEEccCe--------------------EEEEEEEeeCCceEEEEcCC
Confidence 46789999999999999999999999999999999999 99999999999999999885
No 8
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.35 E-value=7.4e-14 Score=107.92 Aligned_cols=51 Identities=51% Similarity=0.909 Sum_probs=49.5
Q ss_pred EEEEEEcCCcceeeeehhHHHHHhhhhcccccceeeeeccccccceeccCCCceeeEEeeeeeeeeeCCCc
Q psy7547 7 LKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGY 77 (138)
Q Consensus 7 LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF~~~~~~~~~~~~~~~~~~~~sYKMksvYaHFPi~vkv 77 (138)
|.|+.|+++|++.|+.+|++|||+||++|||+|| +|+|+.+|.|||+++.+
T Consensus 55 i~v~~~~~~k~~~a~~Gt~rsli~NmI~GVt~Gf--------------------~~~L~lvGvGyra~v~~ 105 (192)
T 2zkr_e 55 LRVDKWWGNRKELATVRTICSHVQNMIKGVTLGF--------------------RYKMRSVYAHFPINVVI 105 (192)
T ss_dssp EEEECSCCCHHHHHHHHHHHHHHHHHHHHHHTCE--------------------EEEEEEECSSSCCEEEE
T ss_pred EEEEcCCCCHHHHHHHHHHHHHHhCEEEeeccCc--------------------EEEEEEEEecceeEEEE
Confidence 9999999999999999999999999999999999 99999999999999666
No 9
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J
Probab=99.31 E-value=2.4e-13 Score=103.99 Aligned_cols=53 Identities=21% Similarity=0.186 Sum_probs=50.2
Q ss_pred cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccceeeeeccccccceeccCCCceeeEEeeeeeeeeeCC
Q psy7547 3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPP 75 (138)
Q Consensus 3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF~~~~~~~~~~~~~~~~~~~~sYKMksvYaHFPi~v 75 (138)
+++.|.|+.|+++|++.|+.+|++|||+||++|||+|| +|+|+.+|.||+...
T Consensus 45 ~~~~l~v~~~~~~k~~~a~~Gt~rsli~Nmi~GVt~Gf--------------------~~~L~lvGvGyra~~ 97 (177)
T 1rl6_A 45 EGNVITVTRPSDEKHHRALHGTTRSLLANMVEGVSKGY--------------------EKALELVGVGYRASK 97 (177)
T ss_dssp ETTEEEEECSCCSHHHHHHHHHHHHHHHHHHHHHHTCE--------------------EEEEEEESTTCEEEE
T ss_pred eCCEEEEEcCCCCHHHHHHHHHHHHHHhCEEEeEcCCc--------------------EEEEEEEeeceEEEe
Confidence 46789999999999999999999999999999999999 999999999998774
No 10
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=99.29 E-value=7.4e-13 Score=104.80 Aligned_cols=53 Identities=17% Similarity=0.147 Sum_probs=50.4
Q ss_pred cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccceeeeeccccccceeccCCCceeeEEeeeeeeeeeCC
Q psy7547 3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPP 75 (138)
Q Consensus 3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF~~~~~~~~~~~~~~~~~~~~sYKMksvYaHFPi~v 75 (138)
+++.|.|+.|+++|++.|+++|++|||+||++|||+|| +|+|+++|.||+..+
T Consensus 73 e~~~i~v~~~~~~k~~ra~~Gt~rslI~NMI~GVt~Gf--------------------~kkLelvGvGYra~~ 125 (212)
T 1nkw_E 73 DGDQLLVERPSDAQKHRALHGLTRTLVANAVKGVSDGY--------------------TINLELRGVGFRAKL 125 (212)
T ss_pred ECCEEEEEcCCCCHHHHHHHHHHHHHhhCEEEeeccCe--------------------EEEEEEeeeeeEEEc
Confidence 46889999999999999999999999999999999999 999999999998874
No 11
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E* 3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H
Probab=99.27 E-value=2.3e-13 Score=105.03 Aligned_cols=53 Identities=17% Similarity=0.147 Sum_probs=50.1
Q ss_pred cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccceeeeeccccccceeccCCCceeeEEeeeeeeeeeCC
Q psy7547 3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPP 75 (138)
Q Consensus 3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF~~~~~~~~~~~~~~~~~~~~sYKMksvYaHFPi~v 75 (138)
+++.|.|+.|+++|++.|+.+|++|||+||++|||+|| +|+|+++|.|||.++
T Consensus 46 ~~~~i~v~~~~~~k~~~a~~Gt~rslI~NmI~GVt~Gf--------------------~kkL~lvGvGYra~~ 98 (185)
T 2zjr_E 46 DGDQLLVERPSDAQKHRALHGLTRTLVANAVKGVSDGY--------------------TINLELRGVGFRAKL 98 (185)
T ss_dssp CSSSBBCCCSSCSSHHHHHHHHHHHHHHHHHHHHHHCE--------------------EEEEECBSTTCCCCC
T ss_pred eCCEEEEECCCCCHHHHHHHHHHHHHhhcEEeeeccCc--------------------EEEEEEeeeccEEEE
Confidence 46779999999999999999999999999999999999 999999999999774
No 12
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.21 E-value=7.8e-13 Score=105.18 Aligned_cols=54 Identities=20% Similarity=0.166 Sum_probs=50.7
Q ss_pred ccCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccceeeeeccccccceeccCCCceeeEEeeeeeeeeeCC
Q psy7547 2 VNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSSYPSIICPP 75 (138)
Q Consensus 2 v~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF~~~~~~~~~~~~~~~~~~~~sYKMksvYaHFPi~v 75 (138)
++++.|.|+.|+++|++.|+++|++|||+||++|||+|| +|+|+.+|.||+.++
T Consensus 88 ~e~~~i~v~~~~~~k~~~a~~Gt~rslI~NMI~GVt~Gf--------------------~kkLelvGvGYra~~ 141 (223)
T 3bbo_I 88 EESGFLRVKKTVETRRANQMHGLFRTLTDNMVVGVSKGF--------------------EKKLILVGVGYRATV 141 (223)
T ss_dssp CSSSCEEEECSSCCTTHHHHHHHHTTTTTHHHHHTTTCE--------------------EECEECCSTTCCEEE
T ss_pred ecCCEEEEEcCCCcHHHHHHHHHHHHHhhcEEEeeccCc--------------------EEEEEEeeeceEEEe
Confidence 356789999999999999999999999999999999999 999999999998774
No 13
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1
Probab=98.93 E-value=7.7e-11 Score=83.06 Aligned_cols=35 Identities=57% Similarity=1.072 Sum_probs=34.0
Q ss_pred EEEEEEEcCCcceeeeehhHHHHHhhhhcccccce
Q psy7547 6 VLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDF 40 (138)
Q Consensus 6 ~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkgF 40 (138)
.|.|+.|+++|++.|+.+|++|||+||++|||+||
T Consensus 61 ~i~v~~~~~~k~~ra~~Gt~RslI~NMI~GVt~Gf 95 (100)
T 2cql_A 61 RLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGS 95 (100)
T ss_dssp EEEEECCSSSTHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred EEEEEccCCCHHHHHHHHHHHHHHHhhhEeecCCE
Confidence 49999999999999999999999999999999999
No 14
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=39.91 E-value=7.4 Score=26.16 Aligned_cols=65 Identities=28% Similarity=0.453 Sum_probs=33.6
Q ss_pred eecccccc-ceeccCCCceeeEEeeeeeeeeeCCCcCCccceeeeeeEEeEeecccccccccccceEEe-ecCCceeecc
Q psy7547 43 FTNRCLSR-RCYSCAGGNCSYKMTSSYPSIICPPGYDMCQSLCYNGTINVHRCTNIAHDCTSMRNTVIS-TNGSGFKTSS 120 (138)
Q Consensus 43 ~~~~~~~~-~~~~~~~~~~sYKMksvYaHFPi~vkvdg~~s~cy~~tInv~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 120 (138)
+..+|... |||.|.... |+.-.-.....+.-||+=-=. --|++||+.-|...+- +.||.|..+.
T Consensus 17 ~~~~Cp~~~rcY~c~~~g----------h~~~~c~~p~~~~~CYnCG~~----GH~~rdC~~~r~s~~p~~~~s~fs~~n 82 (83)
T 3nyb_B 17 SKERCPSIWRAYILVDDN----------EKAKPKVLPFHTIYCYNCGGK----GHFGDDCKEKRSSRVPNEDGSAFTGSN 82 (83)
T ss_dssp CGGGCGGGTCCCCBC-----------------------CCCBCSSSSCB----SSCGGGCSSCCSCSSCCSSCCSCSTTC
T ss_pred ccccCCCcccccccccCC----------cccccccCCCCCCeecccCCC----CcCcccCCccccCcCCCCCCcccccCC
Confidence 45567543 788887532 221000011234557752111 2378899999877664 4689887665
Q ss_pred c
Q psy7547 121 L 121 (138)
Q Consensus 121 ~ 121 (138)
|
T Consensus 83 l 83 (83)
T 3nyb_B 83 L 83 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 15
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=32.40 E-value=29 Score=23.48 Aligned_cols=34 Identities=26% Similarity=0.615 Sum_probs=22.3
Q ss_pred cccccceeeeeccccccceeccCCCc--ee---eEEeee
Q psy7547 34 KGVTKDFTIFTNRCLSRRCYSCAGGN--CS---YKMTSS 67 (138)
Q Consensus 34 KGVTkgF~~~~~~~~~~~~~~~~~~~--~s---YKMksv 67 (138)
+|..+-......-|++..|-||+.+. |+ |+++.-
T Consensus 43 ~G~l~R~~~~~~~C~sgsC~sC~~~~~~c~~~~~~~~~~ 81 (87)
T 2k02_A 43 MGKVVRISETSEGCLSGSCKSCPEGKAACRQEWWALRLE 81 (87)
T ss_dssp TCCSEEEEEECCSSCSSSSSSCSSCCCSSEEEEEECC--
T ss_pred CCCEEEEecCCCCCCCCCCCCCCCccccccccceeeeee
Confidence 35555444455789999999999998 75 454443
Done!