Query psy7547
Match_columns 138
No_of_seqs 127 out of 319
Neff 1.7
Searched_HMMs 13730
Date Fri Aug 16 21:10:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7547.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7547hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vqoe1 d.141.1.1 (E:1-79) Rib 98.9 1.3E-10 9.1E-15 76.2 0.5 37 3-39 43-79 (79)
2 d2cqla1 d.141.1.1 (A:1-87) Rib 98.8 3.9E-10 2.8E-14 74.6 0.5 37 3-39 51-87 (87)
3 d1rl6a1 d.141.1.1 (A:7-81) Rib 98.7 5.1E-10 3.7E-14 73.2 -0.2 37 3-39 39-75 (75)
4 d2qamg1 d.141.1.1 (G:1-81) Rib 98.7 8.6E-10 6.3E-14 72.9 0.8 37 3-39 45-81 (81)
5 d2j01h1 d.141.1.1 (H:12-82) Ri 98.7 2.4E-10 1.8E-14 73.7 -2.3 37 3-39 35-71 (71)
6 d2zjre2 d.141.1.1 (E:5-82) Rib 98.6 5.4E-10 3.9E-14 73.2 -2.3 37 3-39 42-78 (78)
7 d1vqoe2 d.141.1.1 (E:80-172) R 97.8 1.4E-06 1E-10 61.0 0.6 21 61-81 2-22 (93)
8 d1pvma3 g.41.13.1 (A:143-178) 53.5 2.7 0.00019 24.5 1.4 15 86-100 19-33 (36)
9 d1ut3a_ g.9.1.1 (A:) Beta-defe 18.0 15 0.0011 21.3 0.4 13 55-73 12-24 (38)
10 d1xn7a_ a.4.5.62 (A:) Hypothet 17.3 20 0.0015 23.5 1.0 16 44-59 53-68 (78)
No 1
>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=98.87 E-value=1.3e-10 Score=76.23 Aligned_cols=37 Identities=30% Similarity=0.409 Sum_probs=35.3
Q ss_pred cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccc
Q psy7547 3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKD 39 (138)
Q Consensus 3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkg 39 (138)
+++.|.|+.|.++|++.|+++|++|||+||++||++|
T Consensus 43 ~~~~i~v~~~~~~k~~~a~~GT~rsli~NmI~GVt~G 79 (79)
T d1vqoe1 43 DGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTEG 79 (79)
T ss_dssp CSSEEEEECSCCSHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCEEEeccCcccchhhhhHHHHHHHHHHheeeeeCC
Confidence 5688999999999999999999999999999999987
No 2
>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.78 E-value=3.9e-10 Score=74.60 Aligned_cols=37 Identities=57% Similarity=1.100 Sum_probs=34.9
Q ss_pred cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccc
Q psy7547 3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKD 39 (138)
Q Consensus 3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkg 39 (138)
+++.|.|+.|.++|++.|+++|++|||+||++||++|
T Consensus 51 ~~~~i~v~~~~~~k~~~a~~GT~rslI~Nmi~GVt~G 87 (87)
T d2cqla1 51 KKKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLG 87 (87)
T ss_dssp SSCEEEEECCSSSTHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cccEEEeecCCCCHHHHHHHHHHHHHHHhheeeeeCC
Confidence 3578999999999999999999999999999999997
No 3
>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=98.73 E-value=5.1e-10 Score=73.17 Aligned_cols=37 Identities=30% Similarity=0.317 Sum_probs=35.2
Q ss_pred cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccc
Q psy7547 3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKD 39 (138)
Q Consensus 3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkg 39 (138)
+++.|.|+.|..+|+..|+.+|++|||+||++||++|
T Consensus 39 ~~~~i~v~~~~~~k~~~al~GT~rsli~Nmi~GVt~G 75 (75)
T d1rl6a1 39 EGNVITVTRPSDEKHHRALHGTTRSLLANMVEGVSKG 75 (75)
T ss_dssp ETTEEEEECSCCSHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred eCceEEEccCCCcHHHHHHHHHHHHHHHHhceeecCC
Confidence 4688999999999999999999999999999999987
No 4
>d2qamg1 d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherichia coli [TaxId: 562]}
Probab=98.73 E-value=8.6e-10 Score=72.94 Aligned_cols=37 Identities=22% Similarity=0.206 Sum_probs=35.0
Q ss_pred cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccc
Q psy7547 3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKD 39 (138)
Q Consensus 3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkg 39 (138)
+++.|.|+.|+++|+..|+.+|++|||+||++||++|
T Consensus 45 ~~~~i~v~~~~~~k~~~a~~GT~rsli~NmI~GVt~G 81 (81)
T d2qamg1 45 ADNTLTFGPRDGYADGWAQAGTARALLNSMVIGVTEG 81 (81)
T ss_dssp SSSSCEEEECSSCTTTTHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCEEEEEeCCCChhHHHHHHHHHHHHHHheeeeeCC
Confidence 4678999999999999999999999999999999987
No 5
>d2j01h1 d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]}
Probab=98.71 E-value=2.4e-10 Score=73.74 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=34.7
Q ss_pred cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccc
Q psy7547 3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKD 39 (138)
Q Consensus 3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkg 39 (138)
+++.|.|+.|.++|++.|+.+|++|||+|||+||++|
T Consensus 35 ~~~~i~v~~~~~~k~~~a~~GT~rsli~NmI~GVt~G 71 (71)
T d2j01h1 35 EEGVVRVERPSDERRHKSLHGLTRTLIANAVKGVSEG 71 (71)
T ss_dssp CSSSCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred eCCEEEEEecCCChHHHHHHHHHHHHHHHhheeecCC
Confidence 4578899999999999999999999999999999987
No 6
>d2zjre2 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]}
Probab=98.64 E-value=5.4e-10 Score=73.18 Aligned_cols=37 Identities=24% Similarity=0.229 Sum_probs=34.6
Q ss_pred cCcEEEEEEEcCCcceeeeehhHHHHHhhhhcccccc
Q psy7547 3 NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKD 39 (138)
Q Consensus 3 ~kr~LkVekwfgtKKeiA~VrTvcSHIsNMiKGVTkg 39 (138)
.++.|.|+.|..+|++.|+.+|++|||+||++||++|
T Consensus 42 ~~~~i~v~~~~~~k~~~a~~GT~rsli~Nmi~GVt~G 78 (78)
T d2zjre2 42 DGDQLLVERPSDAQKHRALHGLTRTLVANAVKGVSDG 78 (78)
T ss_dssp CSSSBBCCCSSCSSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCEEEEEcCCCCHHHHHHHHHHHHHHHHheeeecCC
Confidence 4578899999999999999999999999999999987
No 7
>d1vqoe2 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=97.84 E-value=1.4e-06 Score=61.01 Aligned_cols=21 Identities=14% Similarity=0.126 Sum_probs=19.5
Q ss_pred eeEEeeeeeeeeeCCCcCCcc
Q psy7547 61 SYKMTSSYPSIICPPGYDMCQ 81 (138)
Q Consensus 61 sYKMksvYaHFPi~vkvdg~~ 81 (138)
+|||+++|+||||+++++|.+
T Consensus 2 ~Ykmk~vyaHFPi~v~v~g~~ 22 (93)
T d1vqoe2 2 EYGMEVFYSHFPMQVNVEGDE 22 (93)
T ss_dssp EEEEEEECSSSCCEEEEETTE
T ss_pred EEEEEEEEEeCCeEEEEcCCE
Confidence 799999999999999999863
No 8
>d1pvma3 g.41.13.1 (A:143-178) Hypothetical protein Ta0289 C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=53.53 E-value=2.7 Score=24.50 Aligned_cols=15 Identities=53% Similarity=0.891 Sum_probs=13.3
Q ss_pred eeeEEeEeecccccc
Q psy7547 86 NGTINVHRCTNIAHD 100 (138)
Q Consensus 86 ~~tInv~~~~~~~~~ 100 (138)
.|+|.|.||.|-|-|
T Consensus 19 kgeikvfrcsnpacd 33 (36)
T d1pvma3 19 KGEIKVFRCSNPACD 33 (36)
T ss_dssp TSCEEEEEESCTTCC
T ss_pred CCcEEEEEcCCCccc
Confidence 589999999998876
No 9
>d1ut3a_ g.9.1.1 (A:) Beta-defensin, BD {King penguin (Aptenodytes patagonicus), spheniscin-2 [TaxId: 9234]}
Probab=17.98 E-value=15 Score=21.28 Aligned_cols=13 Identities=54% Similarity=1.186 Sum_probs=10.0
Q ss_pred cCCCceeeEEeeeeeeeee
Q psy7547 55 CAGGNCSYKMTSSYPSIIC 73 (138)
Q Consensus 55 ~~~~~~sYKMksvYaHFPi 73 (138)
||.|.|+| |+|||
T Consensus 12 cargrcrf------psipi 24 (38)
T d1ut3a_ 12 CARGRCRF------PSIPI 24 (38)
T ss_dssp EESSSCCT------TEEEE
T ss_pred cccccccC------CCcch
Confidence 88888874 77775
No 10
>d1xn7a_ a.4.5.62 (A:) Hypothetical protein YhgG {Escherichia coli [TaxId: 562]}
Probab=17.30 E-value=20 Score=23.48 Aligned_cols=16 Identities=44% Similarity=0.995 Sum_probs=13.1
Q ss_pred eccccccceeccCCCc
Q psy7547 44 TNRCLSRRCYSCAGGN 59 (138)
Q Consensus 44 ~~~~~~~~~~~~~~~~ 59 (138)
..-|||..|-||..|.
T Consensus 53 ~~gCLsGsCKsCPEg~ 68 (78)
T d1xn7a_ 53 PDGCLSGSCKSCPEGK 68 (78)
T ss_dssp CCCCCCSSCCCCCCCC
T ss_pred ccccccCCCCCCCCcc
Confidence 3569999999998664
Done!