RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7547
(138 letters)
>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 87
Score = 44.5 bits (105), Expect = 1e-07
Identities = 21/37 (56%), Positives = 30/37 (81%)
Query: 2 VNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTK 38
K+ L+V+KW+G +KE+A VRT+CSH+ NM+KGVT
Sbjct: 50 KKKKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTL 86
>d2j01h1 d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus
thermophilus [TaxId: 274]}
Length = 71
Score = 42.5 bits (100), Expect = 5e-07
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 2 VNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTK 38
V + V++VE+ ++ + + I+N +KGV++
Sbjct: 34 VEEGVVRVERPSDERRHKSLHGLTRTLIANAVKGVSE 70
>d2zjre2 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 78
Score = 40.2 bits (94), Expect = 5e-06
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 1 MVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTK 38
+ L VE+ +K A + ++N +KGV+
Sbjct: 40 RQDGDQLLVERPSDAQKHRALHGLTRTLVANAVKGVSD 77
>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 79
Score = 37.2 bits (86), Expect = 5e-05
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 2 VNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTK 38
V+ + +E K ++ + T SHI NM GVT+
Sbjct: 42 VDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTE 78
>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 75
Score = 36.7 bits (85), Expect = 6e-05
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 2 VNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTK 38
V V+ V + K A T S ++NM++GV+K
Sbjct: 38 VEGNVITVTRPSDEKHHRALHGTTRSLLANMVEGVSK 74
>d2qamg1 d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherichia coli
[TaxId: 562]}
Length = 81
Score = 37.0 bits (86), Expect = 7e-05
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 2 VNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTK 38
L G A T + +++M+ GVT+
Sbjct: 44 HADNTLTFGPRDGYADGWAQAGTARALLNSMVIGVTE 80
>d1ulva4 b.30.5.5 (A:2-273) Glucodextranase, domain N {Arthrobacter
globiformis [TaxId: 1665]}
Length = 272
Score = 29.4 bits (66), Expect = 0.12
Identities = 5/40 (12%), Positives = 13/40 (32%)
Query: 88 TINVHRCTNIAHDCTSMRNTVISTNGSGFKTSSLTKPHIN 127
+ T+ + T +G ++ L+ P +
Sbjct: 100 RLTKTYVTDPRRSTVMLGVTFEVLDGGDYQLFVLSDPSLA 139
>d1yioa1 a.4.6.2 (A:131-200) Response regulatory protein StyR,
C-terminal domain {Pseudomonas fluorescens [TaxId:
294]}
Length = 70
Score = 26.2 bits (58), Expect = 0.53
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 5/25 (20%)
Query: 15 TKKEIAA-----VRTVCSHISNMLK 34
K+IA TV H N+++
Sbjct: 29 MNKQIAGELGIAEVTVKVHRHNIMQ 53
>d1eb6a_ d.92.1.12 (A:) Fungal zinc peptidase {Aspergillus oryzae,
deuterolysin [TaxId: 5062]}
Length = 177
Score = 25.3 bits (55), Expect = 2.2
Identities = 15/96 (15%), Positives = 26/96 (27%), Gaps = 11/96 (11%)
Query: 8 KVEKWFGT--KKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMT 65
K E++F T ++ V ++ + T + C +Y +
Sbjct: 39 KFEEYFKTTDQQTRTTVAERLRAVAKEAGSTSGGSTTYHCNDPYGYC---EPNVLAYTLP 95
Query: 66 SSYPSIICPPGYDMCQSLC------YNGTINVHRCT 95
S C Y L T +H T
Sbjct: 96 SKNEIANCDIYYSELPPLAQKCHAQDQATTTLHEFT 131
>d1g8kb_ b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alcaligenes
faecalis [TaxId: 511]}
Length = 133
Score = 25.0 bits (54), Expect = 2.4
Identities = 11/64 (17%), Positives = 20/64 (31%)
Query: 8 KVEKWFGTKKEIAAVRTVCSHISNMLKGVTKDFTIFTNRCLSRRCYSCAGGNCSYKMTSS 67
V G +I A +C+H+ + T + AG + T+
Sbjct: 42 PVPGGVGPDDDIVAYSVLCTHMGCPTSYDSSSKTFSCPCHFTEFDAEKAGQMICGEATAD 101
Query: 68 YPSI 71
P +
Sbjct: 102 LPRV 105
>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 46
Score = 23.6 bits (51), Expect = 3.1
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 45 NRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGY 77
+C S C G C Y + S C GY
Sbjct: 4 TKCSSDMNGYCLHGQCIYLVDMSQNYCRCEVGY 36
>d1jgka_ g.7.1.1 (A:) Candoxin {Malayan krait (Bungarus candidus)
[TaxId: 92438]}
Length = 66
Score = 23.6 bits (51), Expect = 4.3
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 59 NCSYKMTSSYPSIICPPGYDMCQSLCYNGTINVHRCTNIAHDCT 102
C++ + +C G + C+ + R T I C
Sbjct: 5 ICNFDTCRAGELKVCASG----EKYCFKESWREARGTRIERGCA 44
>d1xr7a_ e.8.1.4 (A:) Viral RNA polymerase {Human rhinovirus 16,
HRV-16 [TaxId: 31708]}
Length = 460
Score = 24.6 bits (53), Expect = 5.5
Identities = 5/28 (17%), Positives = 10/28 (35%)
Query: 82 SLCYNGTINVHRCTNIAHDCTSMRNTVI 109
+ + V TS+ N++I
Sbjct: 272 HIFKSTYYEVEGGVPSGCSGTSIFNSMI 299
>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor,
HBEGF {Human (Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 22.4 bits (48), Expect = 6.8
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 55 CAGGNCSYKMTSSYPSIICPPGY--DMCQSL 83
C G C Y PS IC PGY + C L
Sbjct: 10 CIHGECKYVKELRAPSCICHPGYHGERCHGL 40
>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 50
Score = 22.1 bits (47), Expect = 9.2
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 45 NRCLSRRCYSCAGGNCSYKMTSSYPSIICPPGY 77
+RC + + C G C + + PS +C GY
Sbjct: 6 SRCPKQYKHYCIKGRCRFVVAEQTPSCVCDEGY 38
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.132 0.421
Gapped
Lambda K H
0.267 0.0579 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 519,997
Number of extensions: 23290
Number of successful extensions: 162
Number of sequences better than 10.0: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 78
Length of query: 138
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 62
Effective length of database: 1,364,116
Effective search space: 84575192
Effective search space used: 84575192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.6 bits)