BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7548
(134 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 72.4 bits (176), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 75/140 (53%), Gaps = 15/140 (10%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS---------EHQEMFLKINEAWNILK 52
+ + IL + ++ + ++K+ Y+ LIL YHPDK S E + F++I++AW IL
Sbjct: 11 DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70
Query: 53 DEKERKLYESQLLSQQQTHMN-IYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEG 111
+E+ ++ Y+ Q ++ + V L +M F CRCG ++ + + + E
Sbjct: 71 NEETKREYDLQRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCGGKYSVSKDEAEE 130
Query: 112 DSSDDNILIACDTCSLLLEI 131
S LI+CDTCSL++E+
Sbjct: 131 VS-----LISCDTCSLIIEL 145
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 42/59 (71%)
Query: 3 HFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYE 61
++++L N+T EE+K+ Y+ L LKYHPDKN E F +I++A+ +L D K+R+LY+
Sbjct: 8 YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYD 66
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 58.9 bits (141), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 43/60 (71%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYE 61
++++L +++ E+K+ Y+ + LK+HPDKN + E F +I++A+ +L DEK+R++Y+
Sbjct: 9 GYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYD 68
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 44/65 (67%), Gaps = 4/65 (6%)
Query: 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQE----MFLKINEAWNILKDEKE 56
N++E+L +++ E+IK+ Y+ L L++HPDKN +++E F ++EA+ +L D K+
Sbjct: 9 ANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKK 68
Query: 57 RKLYE 61
R LY+
Sbjct: 69 RSLYD 73
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 44/65 (67%), Gaps = 4/65 (6%)
Query: 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQE----MFLKINEAWNILKDEKE 56
++++E+L+ ++ E IK+ Y+ L LK+HPDKN E++E F ++ EA+ +L D K+
Sbjct: 9 VDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKK 68
Query: 57 RKLYE 61
R +Y+
Sbjct: 69 RDIYD 73
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 15/94 (15%)
Query: 4 FEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEM---FLKINEAWNILKDEKERKLY 60
+ +L + N+T ++IK++Y+ L LKYHPDKN ++ E F +IN A IL D +R +Y
Sbjct: 20 YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIY 79
Query: 61 ESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTY 94
+ Y S+ L E GE + TY
Sbjct: 80 DK------------YGSLGLYVAEQFGEENVNTY 101
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEM---FLKINEAWNILKDEKERK 58
N + +L + ++ EI++ +K L LK HPDKN + FLKIN A+ +LKDE RK
Sbjct: 22 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 81
Query: 59 LYE 61
Y+
Sbjct: 82 KYD 84
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108)
Of The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEM---FLKINEAWNILKDEKERK 58
+++EIL + + EI++ YK L +KYHPD+N +E F +I EA+ +L D ++R
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 59 LYE 61
Y+
Sbjct: 64 AYD 66
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEM---FLKINEAWNILKDEKERK 58
N + +L + ++ EI++ +K L LK HPDKN + FLKIN A+ +LKDE RK
Sbjct: 3 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62
Query: 59 LYE 61
Y+
Sbjct: 63 KYD 65
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEH--QEMFLKINEAWNILKDEKERKL 59
++++ L ++ EEIK Y+ L+YHPDKN E +E F +I EA+++L D ++R++
Sbjct: 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREI 63
Query: 60 YE 61
++
Sbjct: 64 FD 65
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEM---FLKINEAWNILKDEKERK 58
+++EIL + + EI++ YK L +KYHPD+N +E F +I EA+ +L D ++R
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 59 LYE 61
Y+
Sbjct: 64 AYD 66
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSE---HQEMFLKINEAWNILKDEKERK 58
++++IL N++ +EIK+ Y L KYHPD N + +E F ++ EA+ +L DE +RK
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 59 LYES 62
Y++
Sbjct: 68 QYDA 71
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERK 58
+++EIL + + EI++ YK L +KYHPD+N E + F +I EA+ +L D ++R
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 59 LYE 61
Y+
Sbjct: 64 AYD 66
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 40/58 (68%)
Query: 4 FEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYE 61
+++L + ++ +E+K+ Y+ LKYHPDK + E F +I+EA+ IL D ++R++Y+
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYD 68
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN--SEHQEMFLKINEAWNILKDEKERKL 59
+++EIL + ++ E++K+ Y+ L LK+HPDKN E F I A+ +L + ++RK
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQ 67
Query: 60 YE 61
Y+
Sbjct: 68 YD 69
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPD--KNSEHQEMFLKINEAWNILKDEKERKL 59
+++ IL L+ IK Y+ L KYHPD K ++ + F + EAW +LKDE+ R
Sbjct: 29 DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAE 88
Query: 60 Y--------ESQLLSQQQTHMNIYKSVSLSDM 83
Y + Q+QTH Y D+
Sbjct: 89 YDQLWQHRNDPGFGRQRQTHEQSYSQQDFDDI 120
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 9/71 (12%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS---------EHQEMFLKINEAWNILK 52
+ + IL + ++ + ++K+ Y+ LIL YHPDK S E + F++I++AW IL
Sbjct: 17 DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76
Query: 53 DEKERKLYESQ 63
+E+ +K Y+ Q
Sbjct: 77 NEETKKKYDLQ 87
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 45/65 (69%), Gaps = 4/65 (6%)
Query: 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEM----FLKINEAWNILKDEKE 56
+++EIL+ +++ ++IK+ Y+ L++HPDKN +++E F ++ EA+ +L D+ +
Sbjct: 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHK 61
Query: 57 RKLYE 61
R++Y+
Sbjct: 62 REIYD 66
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPD--KNSEHQEMFLKINEAWNILKDEKERKL 59
+++ I+ L+ IK Y+ L KYHPD K + + F ++ EAW +L DE+ R
Sbjct: 6 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 65
Query: 60 YE 61
Y+
Sbjct: 66 YD 67
>pdb|1YWS|A Chain A, Solution Structure Of Ybl071w-A From Saccharomyces
Cerevisiae
Length = 82
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 72 MNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDT-EGDSSDDNILIACDTCSLLLE 130
M+ Y + + DM + E+QMFTYPC CG F I D EG+ + C +CSL+++
Sbjct: 1 MSTYDEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMFEGEK-----VAVCPSCSLMID 55
Query: 131 IT 132
+
Sbjct: 56 VV 57
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
Williams- Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 4 FEILNCNVNSTLEEIKENYKSLILKYHPDKNS---EHQEMFLKINEAWNILKDEKERKLY 60
+++L +T +IK Y YHPD+NS E E F +I++A+ +L R+ Y
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKY 79
Query: 61 ESQLLS 66
+ LLS
Sbjct: 80 DRGLLS 85
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 3 HFEILNCNVNSTLEEIKENYKSLILKYHPDKN--SEHQEMFLKINEAWNILKDEKERKLY 60
+++IL +++ +IK+ + L +KYHPDKN + + F +I EA+ L D RK Y
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEY 68
Query: 61 ES 62
++
Sbjct: 69 DT 70
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEH--QEMFLKINEAWNILKDEKERK 58
+ + +L + ++ +IK+ YK L ++HPDKN + ++ F++I++A+ IL +E++R
Sbjct: 17 FDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRT 76
Query: 59 LYE 61
Y+
Sbjct: 77 NYD 79
>pdb|1YOP|A Chain A, The Solution Structure Of Kti11p
Length = 83
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 72 MNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDT-EGDSSDDNILIACDTCSLLLE 130
++ Y + + DM + E+QMFTYPC CG F I D EG+ + C +CSL+++
Sbjct: 2 VSTYDEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMFEGEK-----VAVCPSCSLMID 56
Query: 131 IT 132
+
Sbjct: 57 VV 58
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
C Menber 12
Length = 112
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQ---EMFLKINEAWNILKDEKERK 58
+++ +L C+ S++E+I +K L+ HPDK+ E+ E F K+ +A IL +E+ R
Sbjct: 21 DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80
Query: 59 LYESQLLSQ 67
Y+ SQ
Sbjct: 81 RYDHWRRSQ 89
>pdb|2JR7|A Chain A, Solution Structure Of Human Desr1
Length = 89
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 78 VSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEI 131
V + D ++ +S+ + YPC CG F I ++D E + C +CSL++++
Sbjct: 8 VEIEDFQYDEDSETYFYPCPCGDNFSITKEDLENGED----VATCPSCSLIIKV 57
>pdb|1WGE|A Chain A, Solution Structure Of The Mouse Desr1
Length = 83
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 66 SQQQTHMNIY-KSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDSSDDNILIACDT 124
S + M ++ V + D ++ +S+ + YPC CG F I ++D E + + C +
Sbjct: 2 SSGSSGMAVFHDEVEIEDFQYDEDSETYFYPCPCGDNFAITKEDLE----NGEDVATCPS 57
Query: 125 CSLLLEI 131
CSL++++
Sbjct: 58 CSLIIKV 64
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPD------KNSEHQEMFLKINEAWNILKDEK 55
++++IL N+ +EI + Y+ L L++HPD + + ++ F+ I A +L D +
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 56 ERKLYE 61
RK ++
Sbjct: 443 XRKKFD 448
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 33.9 bits (76), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPD------KNSEHQEMFLKINEAWNILKDEK 55
++++IL N+ +EI + Y+ L L++HPD + + ++ F+ I A +L D +
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 56 ERKLYE 61
RK ++
Sbjct: 443 MRKKFD 448
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 32.3 bits (72), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 16 EEIKENYKSLILKYHPD--KNSEH----QEMFLKINEAWNILKDEKERKLYESQLLSQQQ 69
+++ + Y++L K+HPD KN E +E F I A+ LKD++ + Y+ L Q
Sbjct: 31 QKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDHPDQ 90
Query: 70 THMNIYKSVSL 80
N Y+ L
Sbjct: 91 RFYNYYQYYRL 101
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 30.4 bits (67), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 18 IKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQL-----LSQQQT 70
+++ Y+ L ++HPD + E +N+A++ LKD R Y +L L+Q+QT
Sbjct: 35 LRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKLLRNIDLTQEQT 92
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 30.4 bits (67), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 18 IKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQL-----LSQQQT 70
+++ Y+ L ++HPD + E +N+A++ LKD R Y +L L+Q+QT
Sbjct: 27 LRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKLLRNIDLTQEQT 84
>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|H Chain H, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|I Chain I, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|G Chain G, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|H Chain H, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|I Chain I, Saccharomyces Cerevisiae Fas Type I
pdb|2UV8|G Chain G, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|H Chain H, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|I Chain I, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 2051
Score = 29.6 bits (65), Expect = 0.55, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 19/103 (18%)
Query: 2 NHFE----------ILNCNVNSTL-------EEIKENYKSLILKYHPDKNSEHQEMFLKI 44
NHF+ ++N VN T+ + I+ENY ++I + D + +++F +I
Sbjct: 1696 NHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEI 1755
Query: 45 NEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDMEHKG 87
NE E+ L + +Q + + + + D++ KG
Sbjct: 1756 NEHSTSYTFRSEKGLLSATQFTQPA--LTLMEKAAFEDLKSKG 1796
>pdb|2PFF|B Chain B, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|E Chain E, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|H Chain H, Structural Insights Of Yeast Fatty Acid Synthase
Length = 2006
Score = 29.3 bits (64), Expect = 0.66, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 19/103 (18%)
Query: 2 NHFE----------ILNCNVNSTL-------EEIKENYKSLILKYHPDKNSEHQEMFLKI 44
NHF+ ++N VN T+ + I+ENY ++I + D + +++F +I
Sbjct: 1651 NHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEI 1710
Query: 45 NEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDMEHKG 87
NE E+ L + +Q + + + + D++ KG
Sbjct: 1711 NEHSTSYTFRSEKGLLSATQFTQPA--LTLMEKAAFEDLKSKG 1751
>pdb|2GUZ|A Chain A, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|C Chain C, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|E Chain E, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|G Chain G, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|I Chain I, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|K Chain K, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|M Chain M, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|O Chain O, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
Length = 71
Score = 29.3 bits (64), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 4 FEILNCNVNS-TLEEIKENYKSLILKYHPDKNSEHQEMFL--KINEAWNIL 51
+ILN N+ T +++KE ++ ++L HPDK FL KINEA + L
Sbjct: 17 LQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSP---FLATKINEAKDFL 64
>pdb|1LRY|A Chain A, Crystal Structure Of P. Aeruginosa Peptide Deformylase
Complexed With Antibiotic Actinonin
Length = 167
Score = 28.9 bits (63), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 44 INEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDM-EHKGESQMFTYP 95
+++A L D+ +YE+ + T +N++K + + D+ E K E ++F P
Sbjct: 23 VDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSEDKSEPRVFINP 75
>pdb|1N5N|A Chain A, Crystal Structure Of Peptide Deformylase From
Pseudomonas Aeruginosa
pdb|1N5N|B Chain B, Crystal Structure Of Peptide Deformylase From
Pseudomonas Aeruginosa
pdb|1S17|A Chain A, Identification Of Novel Potent Bicyclic Peptide
Deformylase Inhibitors
pdb|1S17|B Chain B, Identification Of Novel Potent Bicyclic Peptide
Deformylase Inhibitors
Length = 180
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 44 INEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDM-EHKGESQMFTYP 95
+++A L D+ +YE+ + T +N++K + + D+ E K E ++F P
Sbjct: 36 VDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSEDKSEPRVFINP 88
>pdb|1IX1|A Chain A, Crystal Structure Of P.Aeruginosa Peptide Deformylase
Complexed With Antibiotic Actinonin
pdb|1IX1|B Chain B, Crystal Structure Of P.Aeruginosa Peptide Deformylase
Complexed With Antibiotic Actinonin
Length = 171
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 44 INEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDM-EHKGESQMFTYP 95
+++A L D+ +YE+ + T +N++K + + D+ E K E ++F P
Sbjct: 24 VDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSEDKSEPRVFINP 76
>pdb|3I3F|A Chain A, Hypothetical Protein From Giardia Lamblia Gl50803_14299
pdb|3I3F|B Chain B, Hypothetical Protein From Giardia Lamblia Gl50803_14299
pdb|3I3F|C Chain C, Hypothetical Protein From Giardia Lamblia Gl50803_14299
Length = 141
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 12/50 (24%)
Query: 70 THMNIYKSVSLSDMEHKGESQMF--------TYPCRCGAEFCIEEQDTEG 111
+NI+ S SLSD E ++++ T PCRC C+ Q EG
Sbjct: 83 VSLNIFLSTSLSDSEEARFNELYREVFCVPATRPCRC----CVRAQLQEG 128
>pdb|1FAF|A Chain A, Nmr Structure Of The N-Terminal J Domain Of Murine
Polyomavirus T Antigens
Length = 79
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 17 EIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDE 54
+++ YK L HPDK H M ++N W K E
Sbjct: 29 RMQQAYKQQSLLLHPDKGGSHALM-QELNSLWGTFKTE 65
>pdb|1FYH|A Chain A, 1:1 Complex Between An Interferon Gamma Single-Chain
Variant And Its Receptor
pdb|1FYH|D Chain D, 1:1 Complex Between An Interferon Gamma Single-Chain
Variant And Its Receptor
Length = 258
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 7 LNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLLS 66
L NV+ + EN K H D +++ +FL I + W K+E +RK+ +SQ++S
Sbjct: 121 LGANVSGEFVKEAENLKKYFNAGHSDV-ADNGTLFLGILKNW---KEESDRKIMQSQIVS 176
>pdb|2VUG|A Chain A, The Structure Of An Archaeal Homodimeric Rna Ligase
pdb|2VUG|B Chain B, The Structure Of An Archaeal Homodimeric Rna Ligase
Length = 389
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 1 MNHFEILNCNVNST-LEEIKENYKSLILKYHPDKNSEHQEM 40
+ HFE L + +EEIK+ ++ + +PD +E +E+
Sbjct: 341 VTHFEKLGLKIEIVDIEEIKDGWRITFKRLYPDATNEIREL 381
>pdb|1IUR|A Chain A, Dnaj Domain Of Human Kiaa0730 Protein
Length = 88
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 17 EIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKER 57
E K+ + L LK+HPDKN E+ ++ NE + L++E R
Sbjct: 32 ERKKIIRRLYLKWHPDKNPENHDI---ANEVFKHLQNEINR 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,799,835
Number of Sequences: 62578
Number of extensions: 133294
Number of successful extensions: 464
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 409
Number of HSP's gapped (non-prelim): 66
length of query: 134
length of database: 14,973,337
effective HSP length: 88
effective length of query: 46
effective length of database: 9,466,473
effective search space: 435457758
effective search space used: 435457758
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)