Query psy7548
Match_columns 134
No_of_seqs 194 out of 2201
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 21:11:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7548.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7548hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l6l_A DNAJ homolog subfamily 100.0 9.9E-38 3.4E-42 221.3 10.5 128 1-133 10-147 (155)
2 1hdj_A Human HSP40, HDJ-1; mol 99.9 1.1E-23 3.7E-28 132.8 7.1 68 1-68 3-72 (77)
3 2och_A Hypothetical protein DN 99.9 6.2E-24 2.1E-28 132.7 5.7 65 1-65 8-72 (73)
4 2ctr_A DNAJ homolog subfamily 99.9 3.8E-23 1.3E-27 133.6 7.6 69 1-69 7-77 (88)
5 2ctp_A DNAJ homolog subfamily 99.9 1.5E-23 5.2E-28 132.5 5.6 67 1-67 7-75 (78)
6 2dn9_A DNAJ homolog subfamily 99.9 2E-23 6.8E-28 132.2 5.4 66 1-66 7-75 (79)
7 2cug_A Mkiaa0962 protein; DNAJ 99.9 3.7E-23 1.2E-27 133.6 6.4 66 1-66 17-84 (88)
8 2o37_A Protein SIS1; HSP40, J- 99.9 4.6E-23 1.6E-27 134.2 6.3 69 1-69 8-76 (92)
9 2ej7_A HCG3 gene; HCG3 protein 99.9 3.1E-23 1.1E-27 132.1 4.9 66 1-66 9-78 (82)
10 2ctq_A DNAJ homolog subfamily 99.9 8.5E-23 2.9E-27 137.4 7.0 68 1-68 20-90 (112)
11 2yua_A Williams-beuren syndrom 99.9 6E-23 2.1E-27 135.3 6.0 67 1-67 17-86 (99)
12 2lgw_A DNAJ homolog subfamily 99.9 1.3E-22 4.5E-27 133.8 7.5 68 1-68 2-73 (99)
13 2dmx_A DNAJ homolog subfamily 99.9 1E-22 3.5E-27 132.5 6.2 68 1-68 9-80 (92)
14 1wjz_A 1700030A21RIK protein; 99.9 6.9E-23 2.4E-27 133.6 4.7 66 1-66 16-90 (94)
15 2ctw_A DNAJ homolog subfamily 99.9 2.5E-22 8.5E-27 134.6 7.3 68 1-68 17-87 (109)
16 1bq0_A DNAJ, HSP40; chaperone, 99.8 1.1E-22 3.9E-27 134.9 1.9 68 1-68 3-73 (103)
17 2qsa_A DNAJ homolog DNJ-2; J-d 99.8 8.4E-22 2.9E-26 131.8 5.9 67 1-67 15-88 (109)
18 3apq_A DNAJ homolog subfamily 99.8 5.4E-21 1.8E-25 139.6 6.1 68 1-68 2-72 (210)
19 1fpo_A HSC20, chaperone protei 99.8 2.7E-21 9.2E-26 138.9 3.0 68 1-68 1-78 (171)
20 3hho_A CO-chaperone protein HS 99.8 5E-21 1.7E-25 137.8 3.5 68 1-68 4-81 (174)
21 2ys8_A RAB-related GTP-binding 99.8 7.5E-21 2.6E-25 123.3 3.5 58 1-58 27-86 (90)
22 3bvo_A CO-chaperone protein HS 99.8 3E-20 1E-24 137.0 3.7 67 1-67 43-119 (207)
23 3lz8_A Putative chaperone DNAJ 99.8 1.2E-20 4E-25 147.7 0.0 66 1-66 28-95 (329)
24 1gh6_A Large T antigen; tumor 99.8 4.9E-21 1.7E-25 129.2 -3.9 63 1-64 8-72 (114)
25 2pf4_E Small T antigen; PP2A, 99.8 1.5E-20 5.1E-25 135.0 -2.0 63 2-65 12-76 (174)
26 1faf_A Large T antigen; J doma 99.8 1.8E-19 6E-24 114.2 1.8 57 2-59 12-70 (79)
27 3uo3_A J-type CO-chaperone JAC 99.7 3.8E-19 1.3E-23 128.7 3.6 64 1-64 11-81 (181)
28 1iur_A KIAA0730 protein; DNAJ 99.7 4.6E-19 1.6E-23 114.4 1.3 56 2-57 17-76 (88)
29 1n4c_A Auxilin; four helix bun 99.7 4.5E-19 1.5E-23 128.1 1.2 59 2-60 118-182 (182)
30 2qwo_B Putative tyrosine-prote 99.7 1.1E-18 3.8E-23 113.4 2.5 52 2-53 34-91 (92)
31 3ag7_A Putative uncharacterize 99.7 2.4E-18 8.3E-23 114.6 4.0 54 1-55 41-104 (106)
32 2guz_A Mitochondrial import in 99.7 1.1E-18 3.8E-23 108.3 0.0 55 2-57 15-70 (71)
33 3apo_A DNAJ homolog subfamily 99.7 3.6E-18 1.2E-22 145.0 0.3 68 1-68 21-91 (780)
34 2jr7_A DPH3 homolog; DESR1, CS 99.7 3E-17 1E-21 105.3 4.0 57 73-133 3-59 (89)
35 1wge_A Hypothetical protein 26 99.7 6.5E-17 2.2E-21 102.7 4.7 58 72-133 9-66 (83)
36 1yop_A KTI11P; zinc finger, me 99.7 4E-17 1.4E-21 103.6 3.7 56 74-133 4-59 (83)
37 2y4t_A DNAJ homolog subfamily 99.3 3E-12 1E-16 99.4 4.7 62 1-62 382-449 (450)
38 2guz_B Mitochondrial import in 99.0 1.5E-10 5.1E-15 70.3 3.2 50 4-54 7-59 (65)
39 4ayb_P DNA-directed RNA polyme 93.9 0.017 5.9E-07 32.1 0.9 32 94-132 4-36 (48)
40 2pzi_A Probable serine/threoni 92.9 0.069 2.4E-06 44.5 3.5 45 1-50 629-675 (681)
41 2e2z_A TIM15; protein import, 91.0 0.18 6.2E-06 32.4 3.0 38 90-131 10-50 (100)
42 2avu_E Flagellar transcription 83.3 0.73 2.5E-05 33.0 2.6 29 92-127 133-162 (192)
43 3h0g_L DNA-directed RNA polyme 73.6 0.77 2.6E-05 27.0 0.2 32 92-133 20-52 (63)
44 1twf_L ABC10-alpha, DNA-direct 71.1 1.1 3.8E-05 26.8 0.6 32 91-132 26-58 (70)
45 2ctt_A DNAJ homolog subfamily 67.4 2.4 8.2E-05 26.8 1.6 26 101-126 7-35 (104)
46 1ckt_A High mobility group 1 p 65.3 16 0.00054 20.8 4.9 42 21-62 15-56 (71)
47 2d7l_A WD repeat and HMG-box D 64.3 11 0.00037 22.7 4.1 42 19-61 17-58 (81)
48 2eqz_A High mobility group pro 63.8 17 0.00059 21.7 5.0 42 20-61 28-69 (86)
49 2lcq_A Putative toxin VAPC6; P 61.3 2.5 8.5E-05 28.9 0.9 35 89-134 128-163 (165)
50 2b7e_A PRE-mRNA processing pro 61.0 21 0.00072 20.4 5.1 50 16-65 3-57 (59)
51 1qqr_A Streptokinase domain B; 53.9 6.4 0.00022 26.5 1.8 30 4-33 35-64 (138)
52 4a3n_A Transcription factor SO 53.5 28 0.00096 19.6 6.0 41 19-61 14-54 (71)
53 1uzc_A Hypothetical protein FL 50.7 36 0.0012 20.0 5.6 56 11-66 10-68 (71)
54 2cs1_A PMS1 protein homolog 1; 48.1 43 0.0015 20.2 5.0 42 19-62 19-60 (92)
55 2gmg_A Hypothetical protein PF 44.5 8.2 0.00028 24.9 1.2 26 91-126 65-91 (105)
56 3f27_D Transcription factor SO 44.0 47 0.0016 19.4 6.2 41 19-61 18-58 (83)
57 2yrq_A High mobility group pro 43.5 57 0.002 22.0 5.6 44 19-62 27-70 (173)
58 2crj_A SWI/SNF-related matrix- 40.9 58 0.002 19.6 6.4 43 19-63 19-61 (92)
59 1i11_A Transcription factor SO 40.9 53 0.0018 19.1 5.4 44 19-64 16-59 (81)
60 1wgf_A Upstream binding factor 40.6 58 0.002 19.5 4.8 43 19-63 32-74 (90)
61 2kdx_A HYPA, hydrogenase/ureas 39.2 18 0.00061 23.3 2.2 25 93-128 73-99 (119)
62 3tmm_A Transcription factor A, 38.1 84 0.0029 22.6 6.0 42 20-63 54-95 (238)
63 3tq6_A Transcription factor A, 37.9 90 0.0031 22.0 6.0 42 19-62 21-62 (214)
64 3a43_A HYPD, hydrogenase nicke 37.8 23 0.0008 23.5 2.7 14 93-106 70-84 (139)
65 2fiy_A Protein FDHE homolog; F 36.7 42 0.0014 25.5 4.2 17 117-133 251-267 (309)
66 2kzi_A Engineered protein, ZHE 35.7 33 0.0011 20.2 2.8 41 2-45 24-64 (70)
67 2co9_A Thymus high mobility gr 35.1 78 0.0027 19.4 5.2 42 19-62 29-70 (102)
68 1vq8_S 50S ribosomal protein L 35.0 26 0.00088 21.5 2.3 21 6-26 26-46 (85)
69 1aab_A High mobility group pro 34.9 19 0.00065 21.3 1.7 43 20-62 20-62 (83)
70 1wee_A PHD finger family prote 34.7 46 0.0016 19.2 3.4 28 93-131 16-43 (72)
71 1pft_A TFIIB, PFTFIIBN; N-term 34.3 25 0.00087 18.8 2.1 28 94-130 6-35 (50)
72 2lef_A LEF-1 HMG, protein (lym 32.7 77 0.0026 18.6 4.8 41 19-61 14-54 (86)
73 2zjr_Q 50S ribosomal protein L 32.2 29 0.001 21.7 2.3 21 6-26 26-46 (95)
74 3r8s_T 50S ribosomal protein L 32.1 30 0.001 21.5 2.3 20 6-25 31-50 (93)
75 4euw_A Transcription factor SO 31.8 93 0.0032 19.2 5.0 43 18-62 40-82 (106)
76 3j21_T 50S ribosomal protein L 31.3 32 0.0011 21.1 2.3 20 6-25 27-46 (86)
77 3nm9_A HMG-D, high mobility gr 31.3 75 0.0026 18.0 5.5 42 19-65 15-56 (73)
78 1xou_B Z5138 gene product; coi 31.0 71 0.0024 19.2 3.8 32 34-68 48-79 (95)
79 2lxi_A RNA-binding protein 10; 30.7 37 0.0012 20.1 2.6 20 7-26 7-26 (91)
80 3tve_T 50S ribosomal protein L 30.2 34 0.0012 21.2 2.3 20 6-25 25-44 (92)
81 3qwo_C Motavizumab epitope sca 30.1 35 0.0012 19.3 2.1 28 3-33 10-37 (57)
82 2akl_A PHNA-like protein PA012 29.6 15 0.00052 24.6 0.6 24 94-127 28-52 (138)
83 1gt0_D Transcription factor SO 29.6 84 0.0029 18.1 4.9 42 19-62 14-55 (80)
84 1nlt_A Protein YDJ1, mitochond 29.5 11 0.00036 27.6 -0.1 26 101-126 17-45 (248)
85 1ug2_A 2610100B20RIK gene prod 28.9 34 0.0012 21.4 2.1 21 12-32 67-87 (95)
86 1k99_A Upstream binding factor 28.8 1E+02 0.0035 18.8 5.5 44 19-64 22-65 (99)
87 1hme_A High mobility group pro 28.7 86 0.0029 17.9 5.7 42 19-62 18-59 (77)
88 2e6o_A HMG box-containing prot 26.8 1E+02 0.0035 18.1 5.3 41 19-61 29-69 (87)
89 1hry_A Human SRY; DNA, DNA-bin 26.3 95 0.0032 17.6 5.4 41 19-61 16-56 (76)
90 1j46_A SRY, sex-determining re 26.3 1E+02 0.0035 18.0 4.9 41 19-61 16-56 (85)
91 1wz6_A HMG-box transcription f 24.2 1.1E+02 0.0038 17.7 5.2 42 19-62 19-60 (82)
92 3u2b_C Transcription factor SO 23.9 1.1E+02 0.0037 17.4 5.9 41 19-61 14-54 (79)
93 1r5q_A KAI A, circadian oscill 23.8 1.4E+02 0.0048 18.7 4.6 34 15-48 11-44 (102)
94 1vq8_Z 50S ribosomal protein L 23.6 73 0.0025 19.3 3.0 28 93-129 27-55 (83)
95 1iqt_A AUF1, heterogeneous nuc 23.5 68 0.0023 17.6 2.7 19 7-25 5-23 (75)
96 4e9f_A Methyl-CPG-binding doma 23.1 45 0.0015 22.7 2.1 63 2-65 30-95 (161)
97 1wfh_A Zinc finger (AN1-like) 22.0 35 0.0012 19.9 1.1 11 93-103 29-39 (64)
98 1wg2_A Zinc finger (AN1-like) 22.0 35 0.0012 19.9 1.1 12 93-104 29-40 (64)
99 1v2z_A Circadian clock protein 21.8 1.6E+02 0.0056 18.7 4.9 34 15-48 18-51 (111)
100 1l8y_A Upstream binding factor 21.5 1.5E+02 0.0051 18.2 5.2 35 21-58 18-52 (91)
101 2zet_C Melanophilin; complex, 21.2 36 0.0012 23.1 1.3 26 94-129 69-95 (153)
102 1k3x_A Endonuclease VIII; hydr 21.2 79 0.0027 23.1 3.3 27 93-126 234-261 (262)
103 1qyp_A RNA polymerase II; tran 20.4 1.2E+02 0.004 16.5 4.0 38 93-130 15-54 (57)
104 2cqn_A Formin-binding protein 20.2 1.5E+02 0.005 17.5 5.7 55 13-68 6-66 (77)
105 1wff_A Riken cDNA 2810002D23 p 20.1 40 0.0014 20.7 1.2 11 93-103 40-50 (85)
No 1
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=100.00 E-value=9.9e-38 Score=221.29 Aligned_cols=128 Identities=31% Similarity=0.682 Sum_probs=114.5
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC---C------HHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhhhcc
Q psy7548 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---N------SEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTH 71 (134)
Q Consensus 1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk---~------~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~ 71 (134)
+|||+||||+++|+.++||+|||+|++++|||| . ..+.+.|+.|++||++|+||.+|+.||..+.......
T Consensus 10 ~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~~~~~~ 89 (155)
T 2l6l_A 10 KDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCEDDLRN 89 (155)
T ss_dssp SHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHHHHHHT
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcchhhccc
Confidence 479999999999999999999999999999999 1 1357899999999999999999999999887665543
Q ss_pred -cccccccccccccccCCceeeeeeCCCCCeEEEecccccCCCCCCceeEeCCCCcceEEEee
Q psy7548 72 -MNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEITA 133 (134)
Q Consensus 72 -~~~~~~~~~~~~~~~~~~~~~~~~crcG~~~~v~~~~~~~g~~~~~~~v~C~~CSl~i~v~~ 133 (134)
+.....+.+++|++.++...|+++||||+.|.|+.+++..| .++.|++|||||.|..
T Consensus 90 ~~~~~~~~~~~~m~~~e~~~~f~~~CrCG~~f~i~~~~l~~~-----~~v~C~sCSl~~~v~~ 147 (155)
T 2l6l_A 90 VGPVDAQVYLEEMSWNEGDHSFYLSCRCGGKYSVSKDEAEEV-----SLISCDTCSLIIELLH 147 (155)
T ss_dssp TCSSSEEEETTTSEEETTTTEEEEECSSSCEEEEETTHHHHC-----CEEECSSSSCEEEEEC
T ss_pred cccccceeeHHHhccccCCcEEEEcCCCCCeEEecHHHhCCC-----CEEECCCCceEEEEEE
Confidence 55567778899999999999999999999999999999876 6899999999999974
No 2
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.89 E-value=1.1e-23 Score=132.85 Aligned_cols=68 Identities=29% Similarity=0.534 Sum_probs=63.3
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhh
Q psy7548 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ 68 (134)
Q Consensus 1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 68 (134)
.|||+||||+++||.++||+||+++++++|||+ .+.+.+.|+.|++||++|+||.+|..||..+.+..
T Consensus 3 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 72 (77)
T 1hdj_A 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGL 72 (77)
T ss_dssp CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGC
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHccccc
Confidence 489999999999999999999999999999999 46788999999999999999999999999887643
No 3
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.89 E-value=6.2e-24 Score=132.73 Aligned_cols=65 Identities=32% Similarity=0.668 Sum_probs=60.5
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHHHHHHHh
Q psy7548 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLL 65 (134)
Q Consensus 1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 65 (134)
.|||+||||+++|+.++||++|+++++++|||+.+.+.+.|+.|++||++|+||.+|..||..+.
T Consensus 8 ~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 72 (73)
T 2och_A 8 TGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYDQGGE 72 (73)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 47999999999999999999999999999999966667899999999999999999999998765
No 4
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=3.8e-23 Score=133.55 Aligned_cols=69 Identities=30% Similarity=0.514 Sum_probs=64.3
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhhh
Q psy7548 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQ 69 (134)
Q Consensus 1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 69 (134)
+|||+||||+++|+.++||++|++|++++|||+ .+.+.+.|+.|++||++|+||.+|..||..+.....
T Consensus 7 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 77 (88)
T 2ctr_A 7 GSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFT 77 (88)
T ss_dssp CSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHHT
T ss_pred CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence 489999999999999999999999999999999 567889999999999999999999999998876543
No 5
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=1.5e-23 Score=132.46 Aligned_cols=67 Identities=31% Similarity=0.537 Sum_probs=62.7
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhh
Q psy7548 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQ 67 (134)
Q Consensus 1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 67 (134)
.|||+||||+++|+.++||++|+++++++|||+ .+.+.+.|+.|++||++|+||.+|..||..+...
T Consensus 7 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 75 (78)
T 2ctp_A 7 GDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP 75 (78)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence 489999999999999999999999999999999 5678899999999999999999999999887653
No 6
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=2e-23 Score=132.15 Aligned_cols=66 Identities=35% Similarity=0.579 Sum_probs=61.7
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhh
Q psy7548 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLS 66 (134)
Q Consensus 1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 66 (134)
.|||+||||+++|+.++||++|++|++++|||+ .+.+.+.|+.|++||++|+||.+|..||..+..
T Consensus 7 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 75 (79)
T 2dn9_A 7 GDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSG 75 (79)
T ss_dssp SCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCC
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCc
Confidence 489999999999999999999999999999999 456889999999999999999999999987754
No 7
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.88 E-value=3.7e-23 Score=133.63 Aligned_cols=66 Identities=27% Similarity=0.581 Sum_probs=62.2
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhh
Q psy7548 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLS 66 (134)
Q Consensus 1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 66 (134)
+|||+||||+++|+.++||++|+++++++|||+ .+.+.+.|+.|++||++|+||.+|..||..+..
T Consensus 17 ~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 84 (88)
T 2cug_A 17 FDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSG 84 (88)
T ss_dssp SCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTC
T ss_pred CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCC
Confidence 489999999999999999999999999999999 457889999999999999999999999998864
No 8
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.88 E-value=4.6e-23 Score=134.22 Aligned_cols=69 Identities=32% Similarity=0.620 Sum_probs=63.9
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhhh
Q psy7548 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQ 69 (134)
Q Consensus 1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 69 (134)
.|||+||||+++|+.++||++|++|++++|||+.+...+.|+.|++||++|+||.+|..||.++.....
T Consensus 8 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~ 76 (92)
T 2o37_A 8 TKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQYGLEAAR 76 (92)
T ss_dssp CHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhh
Confidence 379999999999999999999999999999999666677999999999999999999999999887654
No 9
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=3.1e-23 Score=132.10 Aligned_cols=66 Identities=35% Similarity=0.659 Sum_probs=61.1
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHHHHccChHHHHHHHHHHhh
Q psy7548 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKN----SEHQEMFLKINEAWNILKDEKERKLYESQLLS 66 (134)
Q Consensus 1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk~----~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 66 (134)
+|||+||||+++++.++||+||+++++++|||+. +.+.+.|+.|++||++|+||.+|..||..+..
T Consensus 9 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 78 (82)
T 2ej7_A 9 VDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSG 78 (82)
T ss_dssp CCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCC
T ss_pred cCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcc
Confidence 5899999999999999999999999999999992 35778999999999999999999999988754
No 10
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=8.5e-23 Score=137.40 Aligned_cols=68 Identities=34% Similarity=0.524 Sum_probs=63.5
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhh
Q psy7548 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ 68 (134)
Q Consensus 1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 68 (134)
+|||+||||+++|+.++||+|||+|++++|||+ .+.+.+.|+.|++||++|+||.+|..||+.+....
T Consensus 20 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~ 90 (112)
T 2ctq_A 20 EDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQM 90 (112)
T ss_dssp CCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTC
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhcc
Confidence 489999999999999999999999999999999 35688999999999999999999999999988754
No 11
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=6e-23 Score=135.31 Aligned_cols=67 Identities=30% Similarity=0.539 Sum_probs=61.8
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhh
Q psy7548 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQ 67 (134)
Q Consensus 1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 67 (134)
+|||+||||+++|+.++||+||++|++++|||+ .+.+.+.|+.|++||++|+||.+|..||..+...
T Consensus 17 ~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~ 86 (99)
T 2yua_A 17 TALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLSD 86 (99)
T ss_dssp SHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCCH
T ss_pred cCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcccc
Confidence 479999999999999999999999999999999 4567899999999999999999999999876543
No 12
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.87 E-value=1.3e-22 Score=133.79 Aligned_cols=68 Identities=26% Similarity=0.536 Sum_probs=61.9
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhh
Q psy7548 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK----NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ 68 (134)
Q Consensus 1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk----~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 68 (134)
+|||+||||+++|+.++||+||+++++++|||+ .+.+.+.|+.|++||++|+||.+|..||..+....
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~ 73 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGL 73 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC--
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccc
Confidence 489999999999999999999999999999999 24578899999999999999999999999987654
No 13
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1e-22 Score=132.46 Aligned_cols=68 Identities=34% Similarity=0.639 Sum_probs=62.5
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhh
Q psy7548 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK----NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ 68 (134)
Q Consensus 1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk----~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 68 (134)
+|||+||||+++|+.++||++|++|++++|||+ .+.+.+.|+.|++||++|+||.+|..||..+....
T Consensus 9 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 80 (92)
T 2dmx_A 9 ANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSW 80 (92)
T ss_dssp CCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSS
T ss_pred cCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccc
Confidence 489999999999999999999999999999999 24678899999999999999999999999876543
No 14
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.87 E-value=6.9e-23 Score=133.56 Aligned_cols=66 Identities=35% Similarity=0.725 Sum_probs=61.7
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHcCCCCC---------HHHHHHHHHHHHHHHHccChHHHHHHHHHHhh
Q psy7548 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKN---------SEHQEMFLKINEAWNILKDEKERKLYESQLLS 66 (134)
Q Consensus 1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk~---------~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 66 (134)
.|||+||||+++|+.++||+||++|++++|||+. +.+.+.|+.|++||++|+||.+|..||..+..
T Consensus 16 ~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 90 (94)
T 1wjz_A 16 KDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSG 90 (94)
T ss_dssp SCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCC
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccC
Confidence 4899999999999999999999999999999992 56789999999999999999999999998764
No 15
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.87 E-value=2.5e-22 Score=134.55 Aligned_cols=68 Identities=37% Similarity=0.606 Sum_probs=63.3
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhh
Q psy7548 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ 68 (134)
Q Consensus 1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 68 (134)
.|||+||||+++|+.++||+||++|++++|||+ .+.+.+.|+.|++||++|+||.+|..||..+....
T Consensus 17 ~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~ 87 (109)
T 2ctw_A 17 ESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGL 87 (109)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHH
T ss_pred CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhccccc
Confidence 479999999999999999999999999999999 45678999999999999999999999999887654
No 16
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.85 E-value=1.1e-22 Score=134.86 Aligned_cols=68 Identities=32% Similarity=0.592 Sum_probs=63.2
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhh
Q psy7548 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ 68 (134)
Q Consensus 1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 68 (134)
.|||+||||+++||.++||++|++|++++|||+ .+.+.++|+.|++||++|+||.+|..||..+....
T Consensus 3 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 73 (103)
T 1bq0_A 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAF 73 (103)
T ss_dssp CCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSS
T ss_pred CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhh
Confidence 489999999999999999999999999999999 35678999999999999999999999999887654
No 17
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.85 E-value=8.4e-22 Score=131.83 Aligned_cols=67 Identities=27% Similarity=0.445 Sum_probs=62.0
Q ss_pred CCccccccCCCCC-CHHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHHHHHccChHHHHHHHHHHhhh
Q psy7548 1 MNHFEILNCNVNS-TLEEIKENYKSLILKYHPDKN------SEHQEMFLKINEAWNILKDEKERKLYESQLLSQ 67 (134)
Q Consensus 1 ~~~Y~iLgv~~~a-s~~~Ik~ay~~l~~~~HPDk~------~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 67 (134)
+|||+||||+++| +.++||+||+++++++|||+. +.+.+.|+.|++||++|+||.+|..||..+...
T Consensus 15 ~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~~ 88 (109)
T 2qsa_A 15 ENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDHP 88 (109)
T ss_dssp SCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCT
T ss_pred CCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccCc
Confidence 4899999999999 999999999999999999982 457899999999999999999999999988643
No 18
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.83 E-value=5.4e-21 Score=139.62 Aligned_cols=68 Identities=38% Similarity=0.592 Sum_probs=63.6
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhh
Q psy7548 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ 68 (134)
Q Consensus 1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 68 (134)
+|||+||||+++|+.++||+|||+|++++|||+ .+.+.++|+.|++||++|+||.+|+.||+.+....
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~ 72 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGL 72 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTC
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhccccc
Confidence 589999999999999999999999999999999 45688999999999999999999999999987654
No 19
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.82 E-value=2.7e-21 Score=138.86 Aligned_cols=68 Identities=24% Similarity=0.382 Sum_probs=61.1
Q ss_pred CCccccccCCCCC--CHHHHHHHHHHHHHHcCCCCCH--------HHHHHHHHHHHHHHHccChHHHHHHHHHHhhhh
Q psy7548 1 MNHFEILNCNVNS--TLEEIKENYKSLILKYHPDKNS--------EHQEMFLKINEAWNILKDEKERKLYESQLLSQQ 68 (134)
Q Consensus 1 ~~~Y~iLgv~~~a--s~~~Ik~ay~~l~~~~HPDk~~--------~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 68 (134)
||||+||||++++ +.++||++||+|++++|||+.+ .+.+.|+.|++||+||+||.+|..||..+....
T Consensus 1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g~~ 78 (171)
T 1fpo_A 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFD 78 (171)
T ss_dssp CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTTCC
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCC
Confidence 6899999999999 9999999999999999999921 245789999999999999999999999876443
No 20
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.81 E-value=5e-21 Score=137.79 Aligned_cols=68 Identities=26% Similarity=0.395 Sum_probs=61.1
Q ss_pred CCccccccCCCCCC--HHHHHHHHHHHHHHcCCCCC---H-----HHHHHHHHHHHHHHHccChHHHHHHHHHHhhhh
Q psy7548 1 MNHFEILNCNVNST--LEEIKENYKSLILKYHPDKN---S-----EHQEMFLKINEAWNILKDEKERKLYESQLLSQQ 68 (134)
Q Consensus 1 ~~~Y~iLgv~~~as--~~~Ik~ay~~l~~~~HPDk~---~-----~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 68 (134)
+|||+||||+++++ .++||++||+|++++|||+. + .+.+.|..|++||++|+||.+|..||..+....
T Consensus 4 ~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g~~ 81 (174)
T 3hho_A 4 MNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSLQGIE 81 (174)
T ss_dssp CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTCC
T ss_pred CCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHccCCC
Confidence 58999999999998 99999999999999999992 1 256899999999999999999999999886443
No 21
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=7.5e-21 Score=123.29 Aligned_cols=58 Identities=19% Similarity=0.406 Sum_probs=54.3
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHHHccChHHHH
Q psy7548 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERK 58 (134)
Q Consensus 1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~ 58 (134)
+|||+||||+++|+.++||+|||+|++++|||+ .+.+.++|+.|++||++|+||.+|.
T Consensus 27 ~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 86 (90)
T 2ys8_A 27 KDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSG 86 (90)
T ss_dssp SSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCS
T ss_pred CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCccccc
Confidence 489999999999999999999999999999999 4678899999999999999998764
No 22
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.79 E-value=3e-20 Score=137.00 Aligned_cols=67 Identities=24% Similarity=0.355 Sum_probs=59.1
Q ss_pred CCccccccCCCC--CCHHHHHHHHHHHHHHcCCCCCH--------HHHHHHHHHHHHHHHccChHHHHHHHHHHhhh
Q psy7548 1 MNHFEILNCNVN--STLEEIKENYKSLILKYHPDKNS--------EHQEMFLKINEAWNILKDEKERKLYESQLLSQ 67 (134)
Q Consensus 1 ~~~Y~iLgv~~~--as~~~Ik~ay~~l~~~~HPDk~~--------~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 67 (134)
+|||+||||+++ ++.++||++||+|++++|||+.+ .+.++|+.|++||+||+||.+|+.||..+...
T Consensus 43 ~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~G~ 119 (207)
T 3bvo_A 43 RDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGI 119 (207)
T ss_dssp CCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTC
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhcCC
Confidence 589999999986 78999999999999999999921 24678999999999999999999999876543
No 23
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.78 E-value=1.2e-20 Score=147.71 Aligned_cols=66 Identities=33% Similarity=0.629 Sum_probs=0.0
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhh
Q psy7548 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLS 66 (134)
Q Consensus 1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 66 (134)
+|||+||||+++||.++||+|||+|++++|||+ .+.+.++|++|++||++|+||.+|+.||+++..
T Consensus 28 ~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~ 95 (329)
T 3lz8_A 28 KDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQH 95 (329)
T ss_dssp --------------------------------------------------------------------
T ss_pred cCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhcc
Confidence 489999999999999999999999999999999 456788999999999999999999999998543
No 24
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.76 E-value=4.9e-21 Score=129.20 Aligned_cols=63 Identities=16% Similarity=0.257 Sum_probs=57.4
Q ss_pred CCccccccCCCCCCH--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHHHHHHH
Q psy7548 1 MNHFEILNCNVNSTL--EEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQL 64 (134)
Q Consensus 1 ~~~Y~iLgv~~~as~--~~Ik~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 64 (134)
+++|+||||+++|+. ++||+|||+|++++||||.+. .++|++|++||++|+||.+|+.||.++
T Consensus 8 ~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~-~e~f~~I~~AYevL~d~~~R~~~~~~~ 72 (114)
T 1gh6_A 8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-EEKMKKMNTLYKKMEDGVKYAHQPDFG 72 (114)
T ss_dssp HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT-TTTTHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred hhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc-HHHHHHHHHHHHHHCCHHHHHHhhhcc
Confidence 368999999999999 999999999999999999544 578999999999999999999998644
No 25
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.76 E-value=1.5e-20 Score=135.03 Aligned_cols=63 Identities=16% Similarity=0.257 Sum_probs=56.4
Q ss_pred CccccccCCCCCC--HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHHHHHHHh
Q psy7548 2 NHFEILNCNVNST--LEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLL 65 (134)
Q Consensus 2 ~~Y~iLgv~~~as--~~~Ik~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 65 (134)
|+|+||||+++|+ .++||+|||++++++|||+++. .++|++|++||++|+||.+|+.||+.+.
T Consensus 12 d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~-~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 12 QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-EEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C-CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred cHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC-HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 6899999999999 5999999999999999999544 5789999999999999999999999875
No 26
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.75 E-value=1.8e-19 Score=114.21 Aligned_cols=57 Identities=23% Similarity=0.424 Sum_probs=52.4
Q ss_pred CccccccCCCC--CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHH
Q psy7548 2 NHFEILNCNVN--STLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKL 59 (134)
Q Consensus 2 ~~Y~iLgv~~~--as~~~Ik~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~ 59 (134)
++|+||||+++ ++.++||+|||+|++++|||+.. +.++|++|++||++|+|+.+|..
T Consensus 12 ~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~-~~~~f~~i~~AYe~L~~~~~r~~ 70 (79)
T 1faf_A 12 RLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG-SHALMQELNSLWGTFKTEVYNLR 70 (79)
T ss_dssp HHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSC-CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CHHHHHHHHHHHHHHhhHHHHHH
Confidence 57999999999 99999999999999999999953 35789999999999999998875
No 27
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.75 E-value=3.8e-19 Score=128.66 Aligned_cols=64 Identities=23% Similarity=0.432 Sum_probs=58.9
Q ss_pred CCccccc------cCCC-CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHHHHHHH
Q psy7548 1 MNHFEIL------NCNV-NSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQL 64 (134)
Q Consensus 1 ~~~Y~iL------gv~~-~as~~~Ik~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 64 (134)
+|||+|| |+++ +|+.++||++||+|++++|||+.+.+.+.|+.|++||++|+||.+|..||..+
T Consensus 11 ~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 11 STFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKL 81 (181)
T ss_dssp CCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 5899999 4665 89999999999999999999995547889999999999999999999999988
No 28
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.73 E-value=4.6e-19 Score=114.42 Aligned_cols=56 Identities=25% Similarity=0.307 Sum_probs=51.0
Q ss_pred CccccccCCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHHHHccChHHH
Q psy7548 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN----SEHQEMFLKINEAWNILKDEKER 57 (134)
Q Consensus 2 ~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk~----~~~~~~f~~i~~Ay~~L~d~~~R 57 (134)
++|+||||+++|+.++||+|||+|++++|||++ +.+.++|+.|++||++|+|...|
T Consensus 17 ~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 17 EVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp HHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence 579999999999999999999999999999993 34789999999999999987654
No 29
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.73 E-value=4.5e-19 Score=128.08 Aligned_cols=59 Identities=25% Similarity=0.564 Sum_probs=54.3
Q ss_pred CccccccCCCCCCHHHHHHHHHHHHHHcCCCC---CH---HHHHHHHHHHHHHHHccChHHHHHH
Q psy7548 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NS---EHQEMFLKINEAWNILKDEKERKLY 60 (134)
Q Consensus 2 ~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk---~~---~~~~~f~~i~~Ay~~L~d~~~R~~Y 60 (134)
|+|+||||+++|+.++||+|||++++++|||| .+ .+.++|+.|++||++|+||.+|+.|
T Consensus 118 d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 118 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred chhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 79999999999999999999999999999999 22 2788999999999999999998765
No 30
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.72 E-value=1.1e-18 Score=113.36 Aligned_cols=52 Identities=23% Similarity=0.486 Sum_probs=47.7
Q ss_pred CccccccCCCCCCHHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHHHHHccC
Q psy7548 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS------EHQEMFLKINEAWNILKD 53 (134)
Q Consensus 2 ~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk~~------~~~~~f~~i~~Ay~~L~d 53 (134)
++|++|||+++||.++||+|||++++++||||++ .+.++|+.|++||++|.+
T Consensus 34 ~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 34 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999922 378899999999999974
No 31
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.72 E-value=2.4e-18 Score=114.59 Aligned_cols=54 Identities=19% Similarity=0.343 Sum_probs=48.9
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHcCCCCCH----------HHHHHHHHHHHHHHHccChH
Q psy7548 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS----------EHQEMFLKINEAWNILKDEK 55 (134)
Q Consensus 1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk~~----------~~~~~f~~i~~Ay~~L~d~~ 55 (134)
.|||+|||++. ||.++||+|||++++++||||++ .+.++|+.|++||++|+|+.
T Consensus 41 ~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 41 SGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp SCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 38999999996 99999999999999999999932 35789999999999999985
No 32
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.1e-18 Score=108.34 Aligned_cols=55 Identities=31% Similarity=0.390 Sum_probs=49.2
Q ss_pred CccccccCCC-CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHH
Q psy7548 2 NHFEILNCNV-NSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKER 57 (134)
Q Consensus 2 ~~Y~iLgv~~-~as~~~Ik~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R 57 (134)
++|+||||++ +++.++||++||+|++++|||+. .+.+.|++|++||++|+++..|
T Consensus 15 ~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~-g~~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 15 EALQILNLTENTLTKKKLKEVHRKIMLANHPDKG-GSPFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp HHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGT-CCHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHhhhhhc
Confidence 5799999999 79999999999999999999994 3456899999999999987644
No 33
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.67 E-value=3.6e-18 Score=145.00 Aligned_cols=68 Identities=38% Similarity=0.592 Sum_probs=40.7
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhh
Q psy7548 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ 68 (134)
Q Consensus 1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 68 (134)
+|||+||||+++||.++||+|||+|++++|||+ .+.+.++|+.|++||++|+||.+|+.||+++....
T Consensus 21 ~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~ 91 (780)
T 3apo_A 21 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGL 91 (780)
T ss_dssp --CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC-----
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhccccc
Confidence 489999999999999999999999999999999 45578899999999999999999999999887554
No 34
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=3e-17 Score=105.28 Aligned_cols=57 Identities=28% Similarity=0.703 Sum_probs=53.1
Q ss_pred ccccccccccccccCCceeeeeeCCCCCeEEEecccccCCCCCCceeEeCCCCcceEEEee
Q psy7548 73 NIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEITA 133 (134)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~crcG~~~~v~~~~~~~g~~~~~~~v~C~~CSl~i~v~~ 133 (134)
.+++.+++++|.++++...|.|+||||+.|.|+.+++..| ..++.|++|||||+|+.
T Consensus 3 ~vydeV~LeDm~~de~~~~y~ypCrCGd~F~IteedLe~g----e~iv~C~sCSL~IkV~y 59 (89)
T 2jr7_A 3 VFHDEVEIEDFQYDEDSETYFYPCPCGDNFSITKEDLENG----EDVATCPSCSLIIKVIY 59 (89)
T ss_dssp SCSCEEETTTSEEETTTTEEEEECTTSSEEEEEHHHHHHT----CCEEECTTTCCEEEEEC
T ss_pred cceeEEEHHHcEEcCCCCEEEEcCCCCCEEEECHHHHhCC----CEEEECCCCccEEEEEE
Confidence 4678899999999999999999999999999999999998 78999999999999975
No 35
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=99.66 E-value=6.5e-17 Score=102.67 Aligned_cols=58 Identities=28% Similarity=0.689 Sum_probs=54.1
Q ss_pred cccccccccccccccCCceeeeeeCCCCCeEEEecccccCCCCCCceeEeCCCCcceEEEee
Q psy7548 72 MNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEITA 133 (134)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~crcG~~~~v~~~~~~~g~~~~~~~v~C~~CSl~i~v~~ 133 (134)
+.+++.+++++|.++++...|.|+||||+.|.|+.+++..| ..++.|++|||||+|+.
T Consensus 9 ~~~~dev~LeDm~~de~~~~y~y~CrCGd~F~it~edL~~g----e~iv~C~sCSL~I~V~~ 66 (83)
T 1wge_A 9 AVFHDEVEIEDFQYDEDSETYFYPCPCGDNFAITKEDLENG----EDVATCPSCSLIIKVIY 66 (83)
T ss_dssp CCCSCEEEGGGSCCBTTTTEEEECCSSSSCEEEEHHHHHTT----CCEEECTTTCCEEEEEC
T ss_pred ceeeEEEEHHHceEccCCCEEEEeCCCCCEEEECHHHHhCC----CEEEECCCCceEEEEEe
Confidence 55788999999999999999999999999999999999998 78999999999999975
No 36
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=99.66 E-value=4e-17 Score=103.62 Aligned_cols=56 Identities=36% Similarity=0.775 Sum_probs=52.8
Q ss_pred cccccccccccccCCceeeeeeCCCCCeEEEecccccCCCCCCceeEeCCCCcceEEEee
Q psy7548 74 IYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEITA 133 (134)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~crcG~~~~v~~~~~~~g~~~~~~~v~C~~CSl~i~v~~ 133 (134)
+++.+++++|.++++...|.|+||||+.|.|+.+++..| ..++.|++|||||+|+.
T Consensus 4 ~~dev~leDm~~de~~~~y~ypCrCGd~F~it~edL~~g----e~iv~C~sCSL~I~V~~ 59 (83)
T 1yop_A 4 TYDEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMFEG----EKVAVCPSCSLMIDVVF 59 (83)
T ss_dssp CSBCCBGGGSEEETTTTEEEEEETTTEEEEEEHHHHHTT----CCEEECSSSCCEEECBC
T ss_pred eeeEEEHHHcEEcCCCCEEEEeCCCCCeEEECHHHHhCC----CEEEECCCCccEEEEEE
Confidence 678899999999999999999999999999999999998 88999999999999975
No 37
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.26 E-value=3e-12 Score=99.42 Aligned_cols=62 Identities=31% Similarity=0.590 Sum_probs=53.1
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC--C----HHHHHHHHHHHHHHHHccChHHHHHHHH
Q psy7548 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--N----SEHQEMFLKINEAWNILKDEKERKLYES 62 (134)
Q Consensus 1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk--~----~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 62 (134)
.++|.+||+.++++.++|+++|+++++++|||+ . ..+.+.|+.|.+||++|+||++|..||+
T Consensus 382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 379999999999999999999999999999999 2 3478899999999999999999999996
No 38
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.02 E-value=1.5e-10 Score=70.30 Aligned_cols=50 Identities=22% Similarity=0.211 Sum_probs=43.3
Q ss_pred cccccCCCC---CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccCh
Q psy7548 4 FEILNCNVN---STLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDE 54 (134)
Q Consensus 4 Y~iLgv~~~---as~~~Ik~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~ 54 (134)
|.||||+++ ++.++|+++||+|+...|||+. ++......|++|.++|...
T Consensus 7 ~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkG-GS~yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 7 CKILNIEESKGDLNMDKINNRFNYLFEVNDKEKG-GSFYLQSKVYRAAERLKWE 59 (65)
T ss_dssp HHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGT-CCHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHHHHH
Confidence 679999999 9999999999999999999983 4455677999999998643
No 39
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=93.91 E-value=0.017 Score=32.09 Aligned_cols=32 Identities=22% Similarity=0.546 Sum_probs=25.3
Q ss_pred eeC-CCCCeEEEecccccCCCCCCceeEeCCCCcceEEEe
Q psy7548 94 YPC-RCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEIT 132 (134)
Q Consensus 94 ~~c-rcG~~~~v~~~~~~~g~~~~~~~v~C~~CSl~i~v~ 132 (134)
|.| |||..|.-++-+...| +.|+.|-..|...
T Consensus 4 Y~C~rCg~~fs~~el~~lP~-------IrCpyCGyrii~K 36 (48)
T 4ayb_P 4 YRCGKCWKTFTDEQLKVLPG-------VRCPYCGYKIIFM 36 (48)
T ss_dssp -CCCCTTTTCCCCCSCCCSS-------SCCTTTCCSCEEC
T ss_pred EEeeccCCCccHHHHhhCCC-------cccCccCcEEEEE
Confidence 788 9999888777777777 9999999887653
No 40
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=92.92 E-value=0.069 Score=44.46 Aligned_cols=45 Identities=13% Similarity=0.101 Sum_probs=35.4
Q ss_pred CCccccccCCCCCCH--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q psy7548 1 MNHFEILNCNVNSTL--EEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNI 50 (134)
Q Consensus 1 ~~~Y~iLgv~~~as~--~~Ik~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~ 50 (134)
+++|.+||++.+... .+|+++||++++..+++ .+++..|..|..|
T Consensus 629 ~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~-----~~r~~lvd~a~~v 675 (681)
T 2pzi_A 629 ASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ-----RHRYTLVDMANKV 675 (681)
T ss_dssp CSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH-----HHHHHHHHHHHHH
T ss_pred CCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh-----HHHHHHHHHhccc
Confidence 368999999776544 67999999999977665 3678888888765
No 41
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=91.05 E-value=0.18 Score=32.42 Aligned_cols=38 Identities=26% Similarity=0.681 Sum_probs=31.9
Q ss_pred eeeeeeC-CCC--CeEEEecccccCCCCCCceeEeCCCCcceEEE
Q psy7548 90 QMFTYPC-RCG--AEFCIEEQDTEGDSSDDNILIACDTCSLLLEI 131 (134)
Q Consensus 90 ~~~~~~c-rcG--~~~~v~~~~~~~g~~~~~~~v~C~~CSl~i~v 131 (134)
-...+.| .|+ ....|+......| .++|.|++|..+..|
T Consensus 10 ~~l~FTC~~C~tRs~k~iSk~aY~~G----vViv~C~gC~n~HlI 50 (100)
T 2e2z_A 10 MMIAFTCKKCNTRSSHTMSKQAYEKG----TVLISCPHCKVRHLI 50 (100)
T ss_dssp EEEEEEETTTTEEEEEEEEHHHHHTS----EEEEECTTTCCEEES
T ss_pred EEEEEEccCCCCcchhhcCHHHhhCC----EEEEEcCCCccceEe
Confidence 3456788 888 5888999999999 999999999988765
No 42
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=83.25 E-value=0.73 Score=33.01 Aligned_cols=29 Identities=28% Similarity=0.690 Sum_probs=23.2
Q ss_pred eeeeC-CCCCeEEEecccccCCCCCCceeEeCCCCcc
Q psy7548 92 FTYPC-RCGAEFCIEEQDTEGDSSDDNILIACDTCSL 127 (134)
Q Consensus 92 ~~~~c-rcG~~~~v~~~~~~~g~~~~~~~v~C~~CSl 127 (134)
--..| +||+.|.+...+.... ..|+-|..
T Consensus 133 ~l~~C~~Cgg~fv~~~~~~~~~-------f~Cp~C~~ 162 (192)
T 2avu_E 133 QLSSCNCCGGNFITHAHQPVGS-------FACSLCQP 162 (192)
T ss_dssp EEEECTTTCCEEEEESSCCSSC-------CCCTTC--
T ss_pred eeCcCCCCCCCeeCccCCCCCC-------CcCCCCCC
Confidence 35788 9999999999997666 79999974
No 43
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=73.60 E-value=0.77 Score=27.00 Aligned_cols=32 Identities=28% Similarity=0.644 Sum_probs=23.1
Q ss_pred eeeeC-CCCCeEEEecccccCCCCCCceeEeCCCCcceEEEee
Q psy7548 92 FTYPC-RCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEITA 133 (134)
Q Consensus 92 ~~~~c-rcG~~~~v~~~~~~~g~~~~~~~v~C~~CSl~i~v~~ 133 (134)
..|.| +||..+.+.. . ..+.|+.|...|....
T Consensus 20 v~Y~C~~Cg~~~~l~~---~-------~~iRC~~CG~RILyK~ 52 (63)
T 3h0g_L 20 MIYLCADCGARNTIQA---K-------EVIRCRECGHRVMYKM 52 (63)
T ss_dssp CCCBCSSSCCBCCCCS---S-------SCCCCSSSCCCCCBCC
T ss_pred eEEECCCCCCeeecCC---C-------CceECCCCCcEEEEEe
Confidence 35889 9998877552 2 2389999999886543
No 44
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=71.15 E-value=1.1 Score=26.80 Aligned_cols=32 Identities=16% Similarity=0.610 Sum_probs=23.2
Q ss_pred eeeeeC-CCCCeEEEecccccCCCCCCceeEeCCCCcceEEEe
Q psy7548 91 MFTYPC-RCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEIT 132 (134)
Q Consensus 91 ~~~~~c-rcG~~~~v~~~~~~~g~~~~~~~v~C~~CSl~i~v~ 132 (134)
...|.| .||..|.+... ..+.|+.|...|...
T Consensus 26 ~v~Y~C~~CG~~~e~~~~----------d~irCp~CG~RILyK 58 (70)
T 1twf_L 26 TLKYICAECSSKLSLSRT----------DAVRCKDCGHRILLK 58 (70)
T ss_dssp CCCEECSSSCCEECCCTT----------STTCCSSSCCCCCBC
T ss_pred eEEEECCCCCCcceeCCC----------CCccCCCCCceEeEe
Confidence 456889 99999887622 125899999876654
No 45
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.44 E-value=2.4 Score=26.80 Aligned_cols=26 Identities=8% Similarity=0.299 Sum_probs=14.9
Q ss_pred eEEEecccccCCCCCCce---eEeCCCCc
Q psy7548 101 EFCIEEQDTEGDSSDDNI---LIACDTCS 126 (134)
Q Consensus 101 ~~~v~~~~~~~g~~~~~~---~v~C~~CS 126 (134)
...|+++|++.|...++. .+.|+.|.
T Consensus 7 ~l~vslee~~~G~~~~i~~~~~~~C~~C~ 35 (104)
T 2ctt_A 7 GMELTFNQAAKGVNKEFTVNIMDTCERCN 35 (104)
T ss_dssp CCCCCCSSCCSSSCTTCCSSCCEECSSSS
T ss_pred EEEEEHHHHcCCCEEEEEeeeeeECCCCc
Confidence 345667777777555542 45555553
No 46
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=65.31 E-value=16 Score=20.83 Aligned_cols=42 Identities=21% Similarity=0.362 Sum_probs=29.6
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHHHHH
Q psy7548 21 NYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYES 62 (134)
Q Consensus 21 ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 62 (134)
..|...+.-||+......+..+.|.+.|..|++.++....+.
T Consensus 15 ~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~ 56 (71)
T 1ckt_A 15 TCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 56 (71)
T ss_dssp HHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHH
T ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 345556677998743345677899999999998876555443
No 47
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.26 E-value=11 Score=22.73 Aligned_cols=42 Identities=19% Similarity=0.262 Sum_probs=31.2
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHHHH
Q psy7548 19 KENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYE 61 (134)
Q Consensus 19 k~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 61 (134)
-+.+|..++.-||+.. ...+..+.|.+.|..|++.++....+
T Consensus 17 ~~e~R~~ik~~~P~~~-~~~eisK~lge~Wk~ls~eeK~~y~~ 58 (81)
T 2d7l_A 17 LEENRSNILSDNPDFS-DEADIIKEGMIRFRVLSTEERKVWAN 58 (81)
T ss_dssp HHHHHHHHHHHCTTCC-SHHHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCc-hhHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4556777788899974 35677889999999999776655443
No 48
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.79 E-value=17 Score=21.72 Aligned_cols=42 Identities=19% Similarity=0.321 Sum_probs=29.5
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHHHH
Q psy7548 20 ENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYE 61 (134)
Q Consensus 20 ~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 61 (134)
+..|..++.-||+......+..+.|.+.|..|++.++....+
T Consensus 28 ~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~ 69 (86)
T 2eqz_A 28 QTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDE 69 (86)
T ss_dssp HHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 445566667799874334567789999999999776655444
No 49
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=61.29 E-value=2.5 Score=28.89 Aligned_cols=35 Identities=23% Similarity=0.575 Sum_probs=24.7
Q ss_pred ceeeeeeC-CCCCeEEEecccccCCCCCCceeEeCCCCcceEEEeeC
Q psy7548 89 SQMFTYPC-RCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEITAR 134 (134)
Q Consensus 89 ~~~~~~~c-rcG~~~~v~~~~~~~g~~~~~~~v~C~~CSl~i~v~~~ 134 (134)
...|.|.| .||..|... ..+ ..|+.|-..++-..|
T Consensus 128 ~~~~~y~C~~Cg~~~~~~----~~~-------~~Cp~CG~~~~~~~~ 163 (165)
T 2lcq_A 128 VIKWRYVCIGCGRKFSTL----PPG-------GVCPDCGSKVKLIPR 163 (165)
T ss_dssp CCCCCEEESSSCCEESSC----CGG-------GBCTTTCCBEEECCC
T ss_pred cccEEEECCCCCCcccCC----CCC-------CcCCCCCCcceeCCc
Confidence 45678999 799888643 222 489999987765543
No 50
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=61.01 E-value=21 Score=20.45 Aligned_cols=50 Identities=10% Similarity=0.300 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHHHHHccC-hH-HHHHHHHHHh
Q psy7548 16 EEIKENYKSLILKYHPDKNSEHQEMFLKI---NEAWNILKD-EK-ERKLYESQLL 65 (134)
Q Consensus 16 ~~Ik~ay~~l~~~~HPDk~~~~~~~f~~i---~~Ay~~L~d-~~-~R~~Yd~~~~ 65 (134)
+|..++|.+|.+...-|..-.=++..+.| ..-|.+|.| |. ++..|+.+..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y~~ 57 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYLS 57 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCccccccCCHHHHHHHHHHHHh
Confidence 57788999999888777633334445555 358999997 65 6666887764
No 51
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=53.92 E-value=6.4 Score=26.50 Aligned_cols=30 Identities=23% Similarity=0.290 Sum_probs=26.2
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHHcCCCC
Q psy7548 4 FEILNCNVNSTLEEIKENYKSLILKYHPDK 33 (134)
Q Consensus 4 Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk 33 (134)
+..|.|....+.++++++-..+..+.||+=
T Consensus 35 l~~k~ig~~Its~eL~~~AqeiL~q~hp~Y 64 (138)
T 1qqr_A 35 LKTLAIGDTITSQELLAQAQSILNKNHPGY 64 (138)
T ss_dssp EEEECTTCEEEHHHHHHHHHHHHHHHSTTE
T ss_pred hcccccCcccCHHHHHHHHHHHHHhcCCCc
Confidence 566777788899999999999999999995
No 52
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=53.52 E-value=28 Score=19.60 Aligned_cols=41 Identities=17% Similarity=0.382 Sum_probs=30.0
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHHHH
Q psy7548 19 KENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYE 61 (134)
Q Consensus 19 k~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 61 (134)
.+.++..++.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 14 ~~~~r~~~~~~~p~~~--~~eisk~lg~~Wk~ls~~eK~~y~~ 54 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLH--NAELSKMLGKSWKALTLAEKRPFVE 54 (71)
T ss_dssp HHHHHHHHHTTCTTSC--HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4556777788899874 3466789999999999776555444
No 53
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=50.67 E-value=36 Score=20.01 Aligned_cols=56 Identities=16% Similarity=0.243 Sum_probs=34.9
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HHHHHccCh-HHHHHHHHHHhh
Q psy7548 11 VNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKIN--EAWNILKDE-KERKLYESQLLS 66 (134)
Q Consensus 11 ~~as~~~Ik~ay~~l~~~~HPDk~~~~~~~f~~i~--~Ay~~L~d~-~~R~~Yd~~~~~ 66 (134)
.-+|.++.+.+|+.|....+-+-...=......|. .-|.+|.++ .+++.|+.+..+
T Consensus 10 ~~~t~eea~~~F~~LL~e~~V~~~~tWe~~~~~i~~DpRY~al~~~~eRk~~F~ey~~~ 68 (71)
T 1uzc_A 10 TWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQ 68 (71)
T ss_dssp CCCSHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHTSGGGGGCSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCccccccCCHHHHHHHHHHHHHH
Confidence 35789999999999999886554111111112222 357778774 555667777654
No 54
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.07 E-value=43 Score=20.16 Aligned_cols=42 Identities=24% Similarity=0.427 Sum_probs=29.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHHHHH
Q psy7548 19 KENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYES 62 (134)
Q Consensus 19 k~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 62 (134)
.+..|..++.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 19 ~~~~r~~~~~~~p~~~--~~eisk~lg~~Wk~ls~eeK~~y~~~ 60 (92)
T 2cs1_A 19 VQDHRPQFLIENPKTS--LEDATLQIEELWKTLSEEEKLKYEEK 60 (92)
T ss_dssp HHHHHHHHHHHCCSSC--HHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3455666777899973 34667899999999997766554443
No 55
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=44.51 E-value=8.2 Score=24.86 Aligned_cols=26 Identities=23% Similarity=0.653 Sum_probs=17.2
Q ss_pred eeeeeC-CCCCeEEEecccccCCCCCCceeEeCCCCc
Q psy7548 91 MFTYPC-RCGAEFCIEEQDTEGDSSDDNILIACDTCS 126 (134)
Q Consensus 91 ~~~~~c-rcG~~~~v~~~~~~~g~~~~~~~v~C~~CS 126 (134)
++.+.| .||-.| .+.+..- ..|+.|.
T Consensus 65 v~p~~C~~CG~~F---~~~~~kP-------srCP~Ck 91 (105)
T 2gmg_A 65 IKPAQCRKCGFVF---KAEINIP-------SRCPKCK 91 (105)
T ss_dssp ECCCBBTTTCCBC---CCCSSCC-------SSCSSSC
T ss_pred EECcChhhCcCee---cccCCCC-------CCCcCCC
Confidence 456788 788887 3333332 5899985
No 56
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=44.02 E-value=47 Score=19.38 Aligned_cols=41 Identities=17% Similarity=0.382 Sum_probs=30.1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHHHH
Q psy7548 19 KENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYE 61 (134)
Q Consensus 19 k~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 61 (134)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 18 ~~~~r~~~~~~~p~~~--~~eisk~lg~~Wk~ls~~eK~~y~~ 58 (83)
T 3f27_D 18 AKDERKRLAQQNPDLH--NAELSKMLGKSWKALTLAEKRPFVE 58 (83)
T ss_dssp HHHHHHHHHHHCSSSC--HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4566777788899974 3466789999999999766555444
No 57
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.46 E-value=57 Score=21.97 Aligned_cols=44 Identities=20% Similarity=0.345 Sum_probs=31.1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHHHHH
Q psy7548 19 KENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYES 62 (134)
Q Consensus 19 k~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 62 (134)
-+..|.-.+.-||+..-...+..+.|.+.|..|++.++....+.
T Consensus 27 ~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~ 70 (173)
T 2yrq_A 27 VQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 70 (173)
T ss_dssp HHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34556667778999522345677899999999998876655543
No 58
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=40.91 E-value=58 Score=19.56 Aligned_cols=43 Identities=16% Similarity=0.350 Sum_probs=31.1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHHHHHH
Q psy7548 19 KENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQ 63 (134)
Q Consensus 19 k~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 63 (134)
.+..|..++.-||+.. ..+..+.|.+.|..|++.++....+..
T Consensus 19 ~~~~r~~~~~~~p~~~--~~eisk~lg~~Wk~ls~eeK~~Y~~~A 61 (92)
T 2crj_A 19 LNERREQIRTRHPDLP--FPEITKMLGAEWSKLQPAEKQRYLDEA 61 (92)
T ss_dssp HHHHHHHHHHHCTTCC--HHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3456666777899974 345678999999999988776555433
No 59
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=40.87 E-value=53 Score=19.11 Aligned_cols=44 Identities=18% Similarity=0.406 Sum_probs=31.6
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHHHHHHH
Q psy7548 19 KENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQL 64 (134)
Q Consensus 19 k~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 64 (134)
.+.++..++.-||+.. ..+..+.|.+.|..|++.++...++..-
T Consensus 16 ~~~~r~~~~~~~p~~~--~~eisk~lg~~Wk~ls~eeK~~y~~~A~ 59 (81)
T 1i11_A 16 AKDERRKILQAFPDMH--NSNISKILGSRWKAMTNLEKQPYYEEQA 59 (81)
T ss_dssp HHHHHHHHHTTCSSCC--HHHHHHHHHHHHTTSCSGGGHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC--HHHHHHHHHhhhhhCCHHHHHHHHHHHH
Confidence 3455666777789873 3456789999999999888766555433
No 60
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=40.58 E-value=58 Score=19.49 Aligned_cols=43 Identities=19% Similarity=0.343 Sum_probs=29.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHHHHHH
Q psy7548 19 KENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQ 63 (134)
Q Consensus 19 k~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 63 (134)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+..
T Consensus 32 ~~~~r~~~k~~~P~~~--~~eisk~lg~~Wk~ls~eeK~~Y~~~A 74 (90)
T 1wgf_A 32 SEEKRRQLQEERPELS--ESELTRLLARMWNDLSEKKKAKYKARE 74 (90)
T ss_dssp HHHTHHHHHHHCTTSC--HHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3455666777889863 345678999999999977665544443
No 61
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=39.18 E-value=18 Score=23.26 Aligned_cols=25 Identities=20% Similarity=0.590 Sum_probs=16.6
Q ss_pred eeeC-CCCCeEEEecccccCCCCCCceeE-eCCCCcce
Q psy7548 93 TYPC-RCGAEFCIEEQDTEGDSSDDNILI-ACDTCSLL 128 (134)
Q Consensus 93 ~~~c-rcG~~~~v~~~~~~~g~~~~~~~v-~C~~CSl~ 128 (134)
.+.| .||..|.+. +.. . .||.|...
T Consensus 73 ~~~C~~CG~~~e~~--~~~---------~~~CP~Cgs~ 99 (119)
T 2kdx_A 73 ELECKDCSHVFKPN--ALD---------YGVCEKCHSK 99 (119)
T ss_dssp EEECSSSSCEECSC--CST---------TCCCSSSSSC
T ss_pred eEEcCCCCCEEeCC--CCC---------CCcCccccCC
Confidence 4678 799888773 222 3 79999544
No 62
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=38.14 E-value=84 Score=22.56 Aligned_cols=42 Identities=19% Similarity=0.399 Sum_probs=30.3
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHHHHHH
Q psy7548 20 ENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQ 63 (134)
Q Consensus 20 ~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 63 (134)
+..|.-.+.-||+.. ..+..+.|.+.|..|++.++....+..
T Consensus 54 ~e~r~~~k~~~P~~~--~~eisk~lge~Wk~Ls~~EK~~y~~~A 95 (238)
T 3tmm_A 54 KEQLPIFKAQNPDAK--TTELIRRIAQRWRELPDSKKKIYQDAY 95 (238)
T ss_dssp HHHHHHHHHHSTTSC--HHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 444566677789874 456778999999999988776655533
No 63
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=37.90 E-value=90 Score=22.00 Aligned_cols=42 Identities=19% Similarity=0.413 Sum_probs=30.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHHHHH
Q psy7548 19 KENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYES 62 (134)
Q Consensus 19 k~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 62 (134)
-+..|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 21 ~~~~r~~~k~~~P~~~--~~eisk~lge~Wk~Ls~~EK~~y~~~ 62 (214)
T 3tq6_A 21 SKEQLPIFKAQNPDAK--TTELIRRIAQRWRELPDSKKKIYQDA 62 (214)
T ss_dssp HHHHHHHHHHHCTTSC--HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCC--HHHHHHHHHHHHHccCHHhhhHHHHH
Confidence 3455666777899974 45677899999999998876665553
No 64
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=37.84 E-value=23 Score=23.52 Aligned_cols=14 Identities=29% Similarity=0.904 Sum_probs=10.3
Q ss_pred eeeC-CCCCeEEEec
Q psy7548 93 TYPC-RCGAEFCIEE 106 (134)
Q Consensus 93 ~~~c-rcG~~~~v~~ 106 (134)
...| .||..|.+..
T Consensus 70 ~~~C~~CG~~~~~~~ 84 (139)
T 3a43_A 70 VFKCRNCNYEWKLKE 84 (139)
T ss_dssp EEEETTTCCEEEGGG
T ss_pred cEECCCCCCEEeccc
Confidence 3678 7998888755
No 65
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=36.72 E-value=42 Score=25.48 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=14.8
Q ss_pred ceeEeCCCCcceEEEee
Q psy7548 117 NILIACDTCSLLLEITA 133 (134)
Q Consensus 117 ~~~v~C~~CSl~i~v~~ 133 (134)
.-+-.|..|..+++++.
T Consensus 251 ~r~e~C~~C~~YlK~~~ 267 (309)
T 2fiy_A 251 LRAETCPSCQGYLKQFY 267 (309)
T ss_dssp EEEEEETTTTEEEEEEE
T ss_pred eEEEEcccccchHhhhh
Confidence 55889999999999874
No 66
>2kzi_A Engineered protein, ZHER2 affibody; protein binding; NMR {Staphylococcus aureus} PDB: 2kzj_A 2otk_E
Probab=35.74 E-value=33 Score=20.23 Aligned_cols=41 Identities=17% Similarity=0.090 Sum_probs=23.5
Q ss_pred CccccccCCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q psy7548 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKIN 45 (134)
Q Consensus 2 ~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk~~~~~~~f~~i~ 45 (134)
.||+||.++-- .++=|..|.+ .++-+|+........-++++
T Consensus 24 AFYeiL~~pnL--tEeQrngfI~-slkddPs~Sqev~aEa~K~n 64 (70)
T 2kzi_A 24 AYWEIALLPNL--NNQQKRAFIR-SLYDDPSQSANLLAEAKKLN 64 (70)
T ss_dssp SSHHHHHCSSS--CHHHHHHHHH-HHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHcCCCc--chhhhhcccc-ccccCccHHHHHHhhhcccc
Confidence 58999988763 3445667765 45667765333333333333
No 67
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=35.08 E-value=78 Score=19.40 Aligned_cols=42 Identities=14% Similarity=0.249 Sum_probs=29.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHHHHH
Q psy7548 19 KENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYES 62 (134)
Q Consensus 19 k~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 62 (134)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 29 ~~~~r~~i~~~~P~~~--~~eisk~lg~~Wk~ls~eeK~~Y~~~ 70 (102)
T 2co9_A 29 FRDTQAAIKGQNPNAT--FGEVSKIVASMWDGLGEEQKQVYKKK 70 (102)
T ss_dssp HHHHHHHHHHHCTTSC--HHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 3445666677799873 34567799999999997766554443
No 68
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=35.04 E-value=26 Score=21.49 Aligned_cols=21 Identities=5% Similarity=0.094 Sum_probs=18.0
Q ss_pred cccCCCCCCHHHHHHHHHHHH
Q psy7548 6 ILNCNVNSTLEEIKENYKSLI 26 (134)
Q Consensus 6 iLgv~~~as~~~Ik~ay~~l~ 26 (134)
++-|++.|+..|||+|-.++-
T Consensus 26 ~F~V~~~AnK~qIK~ave~lf 46 (85)
T 1vq8_S 26 QFAVDDRASKGEVADAVEEQY 46 (85)
T ss_dssp EEEECTTCCHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 467899999999999998873
No 69
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=34.92 E-value=19 Score=21.27 Aligned_cols=43 Identities=21% Similarity=0.356 Sum_probs=28.4
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHHHHH
Q psy7548 20 ENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYES 62 (134)
Q Consensus 20 ~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 62 (134)
+..|..++.-||+......+..+.|.+.|..|++.++....+.
T Consensus 20 ~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~ 62 (83)
T 1aab_A 20 QTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 62 (83)
T ss_dssp HHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4455556667888632123456789999999998776555443
No 70
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=34.67 E-value=46 Score=19.21 Aligned_cols=28 Identities=25% Similarity=0.754 Sum_probs=18.7
Q ss_pred eeeCCCCCeEEEecccccCCCCCCceeEeCCCCcceEEE
Q psy7548 93 TYPCRCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEI 131 (134)
Q Consensus 93 ~~~crcG~~~~v~~~~~~~g~~~~~~~v~C~~CSl~i~v 131 (134)
...|.||..+ ..| ...|.|+.|..|.+.
T Consensus 16 ~~~C~C~~~~-------~~g----~~mI~Cd~C~~W~H~ 43 (72)
T 1wee_A 16 KVDCKCGTKD-------DDG----ERMLACDGCGVWHHT 43 (72)
T ss_dssp EECCTTCCCS-------CCS----SCEEECSSSCEEEET
T ss_pred ceEeeCCCcc-------CCC----CcEEECCCCCCccCC
Confidence 3667787642 112 456899999988764
No 71
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=34.34 E-value=25 Score=18.77 Aligned_cols=28 Identities=25% Similarity=0.694 Sum_probs=17.4
Q ss_pred eeC-CCCC-eEEEecccccCCCCCCceeEeCCCCcceEE
Q psy7548 94 YPC-RCGA-EFCIEEQDTEGDSSDDNILIACDTCSLLLE 130 (134)
Q Consensus 94 ~~c-rcG~-~~~v~~~~~~~g~~~~~~~v~C~~CSl~i~ 130 (134)
..| .||+ .+.++.+ .| .+.|..|-+++.
T Consensus 6 ~~CP~C~~~~l~~d~~---~g------elvC~~CG~v~~ 35 (50)
T 1pft_A 6 KVCPACESAELIYDPE---RG------EIVCAKCGYVIE 35 (50)
T ss_dssp CSCTTTSCCCEEEETT---TT------EEEESSSCCBCC
T ss_pred EeCcCCCCcceEEcCC---CC------eEECcccCCccc
Confidence 457 7887 5544332 22 378999988653
No 72
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=32.68 E-value=77 Score=18.61 Aligned_cols=41 Identities=17% Similarity=0.329 Sum_probs=28.6
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHHHH
Q psy7548 19 KENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYE 61 (134)
Q Consensus 19 k~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 61 (134)
.+.++..++.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 14 ~~~~r~~~~~~~P~~~--~~eisk~lg~~Wk~ls~eeK~~y~~ 54 (86)
T 2lef_A 14 MKEMRANVVAESTLKE--SAAINQILGRRWHALSREEQAKYYE 54 (86)
T ss_dssp HHHHHHHHHHHSSCCC--HHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3455666677789873 3456789999999999766544443
No 73
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=32.19 E-value=29 Score=21.67 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=16.5
Q ss_pred cccCCCCCCHHHHHHHHHHHH
Q psy7548 6 ILNCNVNSTLEEIKENYKSLI 26 (134)
Q Consensus 6 iLgv~~~as~~~Ik~ay~~l~ 26 (134)
++-|++.|+..|||+|-.++-
T Consensus 26 ~F~V~~~anK~eIK~aVE~lf 46 (95)
T 2zjr_Q 26 SFWVSPKATKTEIKDAIQQAF 46 (95)
T ss_dssp EEEECSSCTHHHHHHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHh
Confidence 456888889999998887763
No 74
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=32.13 E-value=30 Score=21.54 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=16.9
Q ss_pred cccCCCCCCHHHHHHHHHHH
Q psy7548 6 ILNCNVNSTLEEIKENYKSL 25 (134)
Q Consensus 6 iLgv~~~as~~~Ik~ay~~l 25 (134)
++-|.+.|+.-|||+|-.++
T Consensus 31 ~F~V~~~AnK~eIK~AVE~l 50 (93)
T 3r8s_T 31 VLKVAKDATKAEIKAAVQKL 50 (93)
T ss_dssp EEEECSSCCHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 46788999999999998876
No 75
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=31.77 E-value=93 Score=19.25 Aligned_cols=43 Identities=14% Similarity=0.348 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHHHHH
Q psy7548 18 IKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYES 62 (134)
Q Consensus 18 Ik~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 62 (134)
-.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 40 F~~~~r~~~k~~~P~~~--~~eisk~lg~~Wk~ls~eeK~~Y~~~ 82 (106)
T 4euw_A 40 WAQAARRKLADQYPHLH--NAELSKTLGKLWRLLNESEKRPFVEE 82 (106)
T ss_dssp HHHHHHHHHHHHCTTSC--HHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35566777788899863 24667899999999997766555443
No 76
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=31.33 E-value=32 Score=21.11 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=16.3
Q ss_pred cccCCCCCCHHHHHHHHHHH
Q psy7548 6 ILNCNVNSTLEEIKENYKSL 25 (134)
Q Consensus 6 iLgv~~~as~~~Ik~ay~~l 25 (134)
++-|.+.|+..|||+|-.++
T Consensus 27 ~F~Vd~~AnK~qIK~AVe~l 46 (86)
T 3j21_T 27 TFIVDRRATKQDIKRAVEEI 46 (86)
T ss_dssp EEEECTTCCHHHHHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHH
Confidence 35678889999999988876
No 77
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=31.31 E-value=75 Score=18.02 Aligned_cols=42 Identities=19% Similarity=0.318 Sum_probs=30.1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHHHHHHHh
Q psy7548 19 KENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLL 65 (134)
Q Consensus 19 k~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 65 (134)
.+.+|..++.-||+.. ..+..+.|.+.|..|++ |..|...-.
T Consensus 15 ~~~~r~~~~~~~p~~~--~~eisk~lg~~Wk~ls~---K~~y~~~A~ 56 (73)
T 3nm9_A 15 LNSARESIKRENPGIK--VTEVAKRGGELWRAMKD---KSEWEAKAA 56 (73)
T ss_dssp HHHHHHHHHHHSSSCC--HHHHHHHHHHHHHHCSC---CHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC--HHHHHHHHHHHHHcCCc---hHHHHHHHH
Confidence 3456666778899974 35667899999999997 666654433
No 78
>1xou_B Z5138 gene product; coiled coil, helix bundle, heterodimer, structural protein/chaperone complex; 2.80A {Escherichia coli} SCOP: a.231.1.2
Probab=30.97 E-value=71 Score=19.24 Aligned_cols=32 Identities=31% Similarity=0.457 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhh
Q psy7548 34 NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ 68 (134)
Q Consensus 34 ~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 68 (134)
.|.+.+....+.+.|. ..+.|+.||..+....
T Consensus 48 ~pqaae~ln~liegyt---~geerklydsalskie 79 (95)
T 1xou_B 48 DPQAAEKLNKLIEGYT---YGEERKLYDSALSKIE 79 (95)
T ss_dssp CHHHHHHHHHHHHHHH---HSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhc---chhHHHHHHHHHHHHH
Confidence 4677777777777775 4688999998877544
No 79
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=30.69 E-value=37 Score=20.12 Aligned_cols=20 Identities=15% Similarity=0.028 Sum_probs=17.3
Q ss_pred ccCCCCCCHHHHHHHHHHHH
Q psy7548 7 LNCNVNSTLEEIKENYKSLI 26 (134)
Q Consensus 7 Lgv~~~as~~~Ik~ay~~l~ 26 (134)
=||++++|.++|++.+.+..
T Consensus 7 ~nLp~~~te~~l~~~F~~~G 26 (91)
T 2lxi_A 7 RMLPQAATEDDIRGQLQSHG 26 (91)
T ss_dssp ETCCSSCCHHHHHHHHHHHT
T ss_pred eCCCCCCCHHHHHHHHHHhC
Confidence 38999999999999998763
No 80
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=30.15 E-value=34 Score=21.24 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=16.6
Q ss_pred cccCCCCCCHHHHHHHHHHH
Q psy7548 6 ILNCNVNSTLEEIKENYKSL 25 (134)
Q Consensus 6 iLgv~~~as~~~Ik~ay~~l 25 (134)
++-|.+.|+.-|||+|-.++
T Consensus 25 ~F~V~~~AnK~qIK~aVe~l 44 (92)
T 3tve_T 25 TFWVHPKATKTEIKNAVETA 44 (92)
T ss_dssp EEEECTTCCHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 45688899999999988876
No 81
>3qwo_C Motavizumab epitope scaffold; immune complex, immune system; HET: EDO; 1.90A {Staphylococcus aureus} SCOP: a.8.1.1
Probab=30.10 E-value=35 Score=19.31 Aligned_cols=28 Identities=25% Similarity=0.241 Sum_probs=19.2
Q ss_pred ccccccCCCCCCHHHHHHHHHHHHHHcCCCC
Q psy7548 3 HFEILNCNVNSTLEEIKENYKSLILKYHPDK 33 (134)
Q Consensus 3 ~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk 33 (134)
||+||.++. -.++=|..|-+ .++-+|+.
T Consensus 10 FYeil~lpn--LtEeqRn~yI~-slkdDPs~ 37 (57)
T 3qwo_C 10 SNEIANLPN--LNEEQRSAFLS-SINDDPSQ 37 (57)
T ss_dssp HHHHHHCTT--CCHHHHHHHHH-HHHHCGGG
T ss_pred HHHHHcCCC--cchhhccchHh-hhccCcch
Confidence 688888876 33456777766 45677776
No 82
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=29.63 E-value=15 Score=24.60 Aligned_cols=24 Identities=29% Similarity=0.916 Sum_probs=15.4
Q ss_pred eeC-CCCCeEEEecccccCCCCCCceeEeCCCCcc
Q psy7548 94 YPC-RCGAEFCIEEQDTEGDSSDDNILIACDTCSL 127 (134)
Q Consensus 94 ~~c-rcG~~~~v~~~~~~~g~~~~~~~v~C~~CSl 127 (134)
-+| .|+..|++....+ ..|+.|.+
T Consensus 28 P~CP~C~seytYeDg~l----------~vCPeC~h 52 (138)
T 2akl_A 28 PPCPQCNSEYTYEDGAL----------LVCPECAH 52 (138)
T ss_dssp CCCTTTCCCCCEECSSS----------EEETTTTE
T ss_pred CCCCCCCCcceEecCCe----------EECCcccc
Confidence 355 7778777765433 46777765
No 83
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=29.60 E-value=84 Score=18.08 Aligned_cols=42 Identities=12% Similarity=0.418 Sum_probs=29.1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHHHHH
Q psy7548 19 KENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYES 62 (134)
Q Consensus 19 k~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 62 (134)
.+.++..++.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 14 ~~~~r~~~~~~~p~~~--~~eisk~lg~~Wk~ls~eeK~~y~~~ 55 (80)
T 1gt0_D 14 SRGQRRKMAQENPKMH--NSEISKRLGAEWKLLSETEKRPFIDE 55 (80)
T ss_dssp HHHHHHHHHTTSTTSC--HHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3445666677889863 34567899999999997666554443
No 84
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=29.52 E-value=11 Score=27.64 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=15.2
Q ss_pred eEEEecccccCCCCCCce---eEeCCCCc
Q psy7548 101 EFCIEEQDTEGDSSDDNI---LIACDTCS 126 (134)
Q Consensus 101 ~~~v~~~~~~~g~~~~~~---~v~C~~CS 126 (134)
...|+++|++.|....+. .+.|+.|.
T Consensus 17 ~l~vslee~~~G~~k~i~~~r~~~C~~C~ 45 (248)
T 1nlt_A 17 EISASLEELYKGRTAKLALNKQILCKECE 45 (248)
T ss_dssp EEEECTTHHHHCEEEEEEEEEEEECTTTT
T ss_pred EEEecHHHhcCCceEEEEeeEEEeCCCCc
Confidence 456677777777554433 44565554
No 85
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=28.86 E-value=34 Score=21.42 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=16.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCC
Q psy7548 12 NSTLEEIKENYKSLILKYHPD 32 (134)
Q Consensus 12 ~as~~~Ik~ay~~l~~~~HPD 32 (134)
+-++.+|+..|+.|++.+|--
T Consensus 67 Nks~nqV~~RFq~Lm~Lf~~~ 87 (95)
T 1ug2_A 67 NKTPVEVSHRFRELMQLFHTA 87 (95)
T ss_dssp SCCHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHHHHH
Confidence 457888888888888887644
No 86
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=28.76 E-value=1e+02 Score=18.78 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=31.1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHHHHHHH
Q psy7548 19 KENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQL 64 (134)
Q Consensus 19 k~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 64 (134)
.+..|..++.-||+.. ..+..+.|.+.|..|++.++....+...
T Consensus 22 ~~~~r~~ik~~~P~~~--~~eisk~lg~~Wk~ls~eeK~~Y~~~A~ 65 (99)
T 1k99_A 22 FMEKRAKYAKLHPEMS--NLDLTKILSKKYKELPEKKKMKYIQDFQ 65 (99)
T ss_dssp HHHHHHHHHTTCTTSC--SHHHHHHHHHHHHHSCSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3455666677789863 2456679999999999887766555443
No 87
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=28.68 E-value=86 Score=17.85 Aligned_cols=42 Identities=19% Similarity=0.325 Sum_probs=29.5
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHHHHH
Q psy7548 19 KENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYES 62 (134)
Q Consensus 19 k~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 62 (134)
.+..|..++.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 18 ~~~~r~~~~~~~p~~~--~~eisk~lg~~Wk~ls~~eK~~y~~~ 59 (77)
T 1hme_A 18 CSEYRPKIKGEHPGLS--IGDVAKKLGEMWNNTAADDKQPYEKK 59 (77)
T ss_dssp HHHHHHHHHHHCTTCC--HHHHHHHHHHHHHHSCGGGSHHHHHH
T ss_pred HHHHHHHHHHHCCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3445666667799863 34667899999999998776554443
No 88
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=26.77 E-value=1e+02 Score=18.15 Aligned_cols=41 Identities=17% Similarity=0.414 Sum_probs=28.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHHHH
Q psy7548 19 KENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYE 61 (134)
Q Consensus 19 k~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 61 (134)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 29 ~~~~r~~~~~~~P~~~--~~eisk~lg~~Wk~ls~eeK~~y~~ 69 (87)
T 2e6o_A 29 AKKYRVEYTQMYPGKD--NRAISVILGDRWKKMKNEERRMYTL 69 (87)
T ss_dssp HHHTHHHHHHHCTTSC--HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC--HHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 4456666777889863 3456678999999999766554444
No 89
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=26.30 E-value=95 Score=17.59 Aligned_cols=41 Identities=10% Similarity=0.349 Sum_probs=27.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHHHH
Q psy7548 19 KENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYE 61 (134)
Q Consensus 19 k~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 61 (134)
.+.+|..++.-||+... .+..+.|.+.|..|++.++....+
T Consensus 16 ~~~~r~~~~~~~p~~~~--~eisk~lg~~Wk~ls~~eK~~y~~ 56 (76)
T 1hry_A 16 SRDQRRKMALENPRMRN--SEISKQLGYQWKMLTEAEKWPFFQ 56 (76)
T ss_dssp HHHHHHHHHHHCSCCSS--SHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCH--HHHHHHHHhHHHhCCHHHHHHHHH
Confidence 34556666777998722 235678999999998666554444
No 90
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=26.28 E-value=1e+02 Score=18.01 Aligned_cols=41 Identities=10% Similarity=0.351 Sum_probs=28.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHHHH
Q psy7548 19 KENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYE 61 (134)
Q Consensus 19 k~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 61 (134)
.+.++..++.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 16 ~~~~r~~~~~~~P~~~--~~eisk~lg~~Wk~ls~eeK~~y~~ 56 (85)
T 1j46_A 16 SRDQRRKMALENPRMR--NSEISKQLGYQWKMLTEAEKWPFFQ 56 (85)
T ss_dssp HHHHHHHHHHHSTTSC--HHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC--HHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 3455666677789873 3456789999999998666544443
No 91
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=24.24 E-value=1.1e+02 Score=17.66 Aligned_cols=42 Identities=17% Similarity=0.343 Sum_probs=28.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHHHHH
Q psy7548 19 KENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYES 62 (134)
Q Consensus 19 k~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 62 (134)
.+.++..++.-||+... .+..+.|.+.|..|++.++....+.
T Consensus 19 ~~~~r~~~~~~~p~~~~--~eisk~lg~~Wk~ls~~eK~~y~~~ 60 (82)
T 1wz6_A 19 CKRHRSLVRQEHPRLDN--RGATKILADWWAVLDPKEKQKYTDM 60 (82)
T ss_dssp HHHHHHHHHHHCSSSCT--THHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCH--HHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 45566677778998722 3456789999999997665544443
No 92
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=23.94 E-value=1.1e+02 Score=17.44 Aligned_cols=41 Identities=20% Similarity=0.450 Sum_probs=29.2
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHHHH
Q psy7548 19 KENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYE 61 (134)
Q Consensus 19 k~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 61 (134)
.+.++..++.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 14 ~~~~r~~~~~~~p~~~--~~eisk~lg~~Wk~ls~~eK~~y~~ 54 (79)
T 3u2b_C 14 SQIERRKIMEQSPDMH--NAEISKRLGKRWKLLKDSDKIPFIQ 54 (79)
T ss_dssp HHHHHHHHHTTSTTSC--HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCC--HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4556667777889863 3456789999999999666555444
No 93
>1r5q_A KAI A, circadian oscillation regulator; four-helix-bundle, gene regulation; 2.00A {Nostoc SP} SCOP: a.186.1.1
Probab=23.79 E-value=1.4e+02 Score=18.73 Aligned_cols=34 Identities=21% Similarity=0.503 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q psy7548 15 LEEIKENYKSLILKYHPDKNSEHQEMFLKINEAW 48 (134)
Q Consensus 15 ~~~Ik~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay 48 (134)
.+++|..||.+.+.|-.+-.....+.=.-|+.|+
T Consensus 11 l~~L~~~YR~ill~YF~~d~~~n~~Id~fVn~aF 44 (102)
T 1r5q_A 11 LQQLKSDYRQILLSYFTTDKALKEKIDKFINAVF 44 (102)
T ss_dssp HHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 3579999999999997665222233334456665
No 94
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=23.62 E-value=73 Score=19.30 Aligned_cols=28 Identities=18% Similarity=0.555 Sum_probs=17.5
Q ss_pred eeeC-CCCCeEEEecccccCCCCCCceeEeCCCCcceE
Q psy7548 93 TYPC-RCGAEFCIEEQDTEGDSSDDNILIACDTCSLLL 129 (134)
Q Consensus 93 ~~~c-rcG~~~~v~~~~~~~g~~~~~~~v~C~~CSl~i 129 (134)
.+.| .||........ .| +..|+.|...+
T Consensus 27 ~y~Cp~CG~~~v~r~a---tG------iW~C~~Cg~~~ 55 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQG---TG------IWQCSYCDYKF 55 (83)
T ss_dssp CEECSSSCCEEEEEEE---TT------EEEETTTCCEE
T ss_pred cCcCCCCCCcceeccC---CC------eEECCCCCCEe
Confidence 4778 88875444333 22 57888887654
No 95
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=23.52 E-value=68 Score=17.62 Aligned_cols=19 Identities=16% Similarity=0.260 Sum_probs=15.9
Q ss_pred ccCCCCCCHHHHHHHHHHH
Q psy7548 7 LNCNVNSTLEEIKENYKSL 25 (134)
Q Consensus 7 Lgv~~~as~~~Ik~ay~~l 25 (134)
=||+++.+.++|+..+.+.
T Consensus 5 ~nLp~~~t~~~l~~~F~~~ 23 (75)
T 1iqt_A 5 GGLSPDTPEEKIREYFGGF 23 (75)
T ss_dssp SCCCSSCCHHHHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHhc
Confidence 4788999999999888775
No 96
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=23.05 E-value=45 Score=22.70 Aligned_cols=63 Identities=11% Similarity=0.049 Sum_probs=41.5
Q ss_pred Ccccccc---CCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHHHHHHHh
Q psy7548 2 NHFEILN---CNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLL 65 (134)
Q Consensus 2 ~~Y~iLg---v~~~as~~~Ik~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 65 (134)
|+|++|= +....+.+.+.++|.++..++ |+-..-+.....+|.+.+.-|+=...|+.+-....
T Consensus 30 dP~~vLVs~ILsqQT~~~~v~~~~~~l~~~~-pt~~~la~a~~~el~~~i~~lG~y~~KAk~i~~~a 95 (161)
T 4e9f_A 30 DPWKLLIATIFLNRTSGKMAIPVLWKFLEKY-PSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFS 95 (161)
T ss_dssp SHHHHHHHHHHTTTSCHHHHHHHHHHHHHHS-CSHHHHTTSCHHHHHHHHGGGSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHhhCcHHHHHHHHHHHHHHC-CCHHHHhccChHhHHhHhhhcCCHHHHHHHHHHHh
Confidence 4555552 456678888999999998887 65422233334578888888886666666654443
No 97
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=22.00 E-value=35 Score=19.88 Aligned_cols=11 Identities=55% Similarity=1.660 Sum_probs=8.4
Q ss_pred eeeCCCCCeEE
Q psy7548 93 TYPCRCGAEFC 103 (134)
Q Consensus 93 ~~~crcG~~~~ 103 (134)
.+.||||..|-
T Consensus 29 ~f~CrCg~~FC 39 (64)
T 1wfh_A 29 GFMCRCGTTFC 39 (64)
T ss_dssp CEECSSSCEEC
T ss_pred CEEeecCCEec
Confidence 57899997664
No 98
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=21.98 E-value=35 Score=19.87 Aligned_cols=12 Identities=42% Similarity=1.406 Sum_probs=8.9
Q ss_pred eeeCCCCCeEEE
Q psy7548 93 TYPCRCGAEFCI 104 (134)
Q Consensus 93 ~~~crcG~~~~v 104 (134)
.+.||||+.|-.
T Consensus 29 ~f~CrCg~~FC~ 40 (64)
T 1wg2_A 29 GFKCKCGSTFCG 40 (64)
T ss_dssp CEECTTSCEECS
T ss_pred CeEeecCCEecc
Confidence 578999976643
No 99
>1v2z_A Circadian clock protein KAIA homolog; all alpha, riken structural genomics/proteomics initiative, structural genomics; 1.80A {Thermosynechococcus elongatus} SCOP: a.186.1.1 PDB: 1q6a_A 1q6b_A 1suy_A 1sv1_A
Probab=21.81 E-value=1.6e+02 Score=18.74 Aligned_cols=34 Identities=18% Similarity=0.470 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q psy7548 15 LEEIKENYKSLILKYHPDKNSEHQEMFLKINEAW 48 (134)
Q Consensus 15 ~~~Ik~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay 48 (134)
.+++|..||.+.+.|-.+-.....+.=.-|+.|+
T Consensus 18 l~~L~~~YR~ill~YF~~d~~~nq~Id~FVn~aF 51 (111)
T 1v2z_A 18 LDELRSIYRTIVLEYFNTDAKVNERIDEFVSKAF 51 (111)
T ss_dssp HHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 3679999999999997665333333344566665
No 100
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=21.48 E-value=1.5e+02 Score=18.16 Aligned_cols=35 Identities=9% Similarity=0.189 Sum_probs=25.6
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHH
Q psy7548 21 NYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERK 58 (134)
Q Consensus 21 ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~ 58 (134)
..|...+.-||+ + ..+.-+.+.+.|..|++.++..
T Consensus 18 ~~r~~~k~~~p~-~--~~evsK~lGe~Wk~ls~~eK~p 52 (91)
T 1l8y_A 18 SVIGDYLARFKN-D--RVKALKAMEMTWNNMEKKEKLM 52 (91)
T ss_dssp HHHHHHHHHTTS-T--HHHHHHHHHHHHHTTGGGHHHH
T ss_pred HHHHHHHHHcCC-C--HHHHHHHHHHHHhcCCHHHHHH
Confidence 345566667898 2 3566789999999999887533
No 101
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=21.23 E-value=36 Score=23.10 Aligned_cols=26 Identities=27% Similarity=0.622 Sum_probs=16.4
Q ss_pred eeC-CCCCeEEEecccccCCCCCCceeEeCCCCcceE
Q psy7548 94 YPC-RCGAEFCIEEQDTEGDSSDDNILIACDTCSLLL 129 (134)
Q Consensus 94 ~~c-rcG~~~~v~~~~~~~g~~~~~~~v~C~~CSl~i 129 (134)
..| +|+..|.+. ...| ..|..|++.|
T Consensus 69 ~~C~~C~~~fg~l---~~~g-------~~C~~C~~~V 95 (153)
T 2zet_C 69 THCARCLQPYRLL---LNSR-------RQCLECSLFV 95 (153)
T ss_dssp TBCTTTCCBGGGC---SSCC-------EECTTTCCEE
T ss_pred ccchhhcCccccc---cCCC-------CcCCCCCchh
Confidence 567 888766544 2334 6777777654
No 102
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=21.21 E-value=79 Score=23.13 Aligned_cols=27 Identities=26% Similarity=0.600 Sum_probs=16.3
Q ss_pred eeeC-CCCCeEEEecccccCCCCCCceeEeCCCCc
Q psy7548 93 TYPC-RCGAEFCIEEQDTEGDSSDDNILIACDTCS 126 (134)
Q Consensus 93 ~~~c-rcG~~~~v~~~~~~~g~~~~~~~v~C~~CS 126 (134)
..+| +||+...-.. + .| =...-|+.|-
T Consensus 234 g~pC~~CG~~I~~~~--~-~g----R~t~~CP~CQ 261 (262)
T 1k3x_A 234 GEPCERCGSIIEKTT--L-SS----RPFYWCPGCQ 261 (262)
T ss_dssp TSBCTTTCCBCEEEE--E-TT----EEEEECTTTC
T ss_pred cCCCCCCCCEeEEEE--E-CC----CCeEECCCCC
Confidence 3579 8997543211 1 12 4578999994
No 103
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=20.41 E-value=1.2e+02 Score=16.51 Aligned_cols=38 Identities=21% Similarity=0.521 Sum_probs=19.3
Q ss_pred eeeC-CCCCeEE-EecccccCCCCCCceeEeCCCCcceEE
Q psy7548 93 TYPC-RCGAEFC-IEEQDTEGDSSDDNILIACDTCSLLLE 130 (134)
Q Consensus 93 ~~~c-rcG~~~~-v~~~~~~~g~~~~~~~v~C~~CSl~i~ 130 (134)
..+| .||..=. +..-..-...........|..|.+...
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~ 54 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWR 54 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEE
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEec
Confidence 4678 8885211 111111111111235788999987654
No 104
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=20.21 E-value=1.5e+02 Score=17.52 Aligned_cols=55 Identities=16% Similarity=0.309 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHHHHHccCh-HHHHHHHHHHhhhh
Q psy7548 13 STLEEIKENYKSLILKYHPDK-----NSEHQEMFLKINEAWNILKDE-KERKLYESQLLSQQ 68 (134)
Q Consensus 13 as~~~Ik~ay~~l~~~~HPDk-----~~~~~~~f~~i~~Ay~~L~d~-~~R~~Yd~~~~~~~ 68 (134)
.-...++.+++.+.+...|.. =..+...|... .+|..+.+. .++.+|+.+.....
T Consensus 6 ~r~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~-~~fkav~~E~eR~~lFeeYi~~Lk 66 (77)
T 2cqn_A 6 SGMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKE-PAFEDITLESERKRIFKDFMHVLE 66 (77)
T ss_dssp CSHHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTS-HHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccC-HHHHhcCCHHHHHHHHHHHHHHHH
Confidence 345678999999988887766 12233333333 489999774 66677888776543
No 105
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=20.05 E-value=40 Score=20.73 Aligned_cols=11 Identities=55% Similarity=1.799 Sum_probs=8.3
Q ss_pred eeeCCCCCeEE
Q psy7548 93 TYPCRCGAEFC 103 (134)
Q Consensus 93 ~~~crcG~~~~ 103 (134)
.+.||||..|-
T Consensus 40 ~f~CrCg~~FC 50 (85)
T 1wff_A 40 SFECRCGNNFC 50 (85)
T ss_dssp CEECTTCCEEC
T ss_pred CeEcCCCCEec
Confidence 68899996553
Done!