RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7548
(134 letters)
>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains) are
associated with hsp70 heat-shock system and it is
thought that this domain mediates the interaction.
DnaJ-domain is therefore part of a chaperone (protein
folding) system. The T-antigens, although not in
Prosite are confirmed as DnaJ containing domains from
literature.
Length = 63
Score = 78.3 bits (194), Expect = 1e-20
Identities = 27/62 (43%), Positives = 42/62 (67%), Gaps = 3/62 (4%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS---EHQEMFLKINEAWNILKDEKERK 58
+++EIL +++ EEIK+ Y+ L LKYHPDKN +E F +INEA+ +L D ++R
Sbjct: 1 DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLSDPEKRA 60
Query: 59 LY 60
+Y
Sbjct: 61 IY 62
>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play
crucial roles in protein translation, folding,
unfolding, translocation, and degradation. They act
primarily by stimulating the ATPase activity of Hsp70s,
an important chaperonine family. Hsp40 proteins are
characterized by the presence of a J domain, which
mediates the interaction with Hsp70. They may contain
other domains as well, and the architectures provide a
means of classification.
Length = 55
Score = 71.0 bits (175), Expect = 9e-18
Identities = 24/55 (43%), Positives = 38/55 (69%), Gaps = 3/55 (5%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEH---QEMFLKINEAWNILKD 53
++++IL +++ EEIK+ Y+ L LKYHPDKN + +E F +INEA+ +L D
Sbjct: 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55
>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain.
Length = 60
Score = 67.3 bits (165), Expect = 4e-16
Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 4/59 (6%)
Query: 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQ----EMFLKINEAWNILKDEK 55
+++EIL +++L+EIK+ Y+ L LKYHPDKN + E F +INEA+ +L D +
Sbjct: 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59
>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional.
Length = 382
Score = 70.6 bits (173), Expect = 3e-15
Identities = 31/62 (50%), Positives = 45/62 (72%), Gaps = 2/62 (3%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPD--KNSEHQEMFLKINEAWNILKDEKERKL 59
+++EIL + N+T EEIK+ Y+ L KYHPD KN E +E F +INEA+ +L D ++RKL
Sbjct: 4 DYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKL 63
Query: 60 YE 61
Y+
Sbjct: 64 YD 65
>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational
modification, protein turnover, chaperones].
Length = 237
Score = 66.4 bits (161), Expect = 3e-14
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 4/64 (6%)
Query: 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS----EHQEMFLKINEAWNILKDEKE 56
++++EIL N++LEEIK+ Y+ L LKYHPD+N +E F +INEA+ IL D +
Sbjct: 6 LDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPER 65
Query: 57 RKLY 60
R Y
Sbjct: 66 RAEY 69
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn
finger domain [Posttranslational modification, protein
turnover, chaperones].
Length = 371
Score = 65.7 bits (161), Expect = 1e-13
Identities = 26/63 (41%), Positives = 42/63 (66%), Gaps = 3/63 (4%)
Query: 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS---EHQEMFLKINEAWNILKDEKER 57
+++EIL + +++ EEIK+ Y+ L KYHPD+N E +E F +INEA+ +L D ++R
Sbjct: 4 RDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKR 63
Query: 58 KLY 60
Y
Sbjct: 64 AAY 66
>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional.
Length = 391
Score = 64.9 bits (158), Expect = 2e-13
Identities = 24/64 (37%), Positives = 44/64 (68%), Gaps = 3/64 (4%)
Query: 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS---EHQEMFLKINEAWNILKDEKER 57
M+++ IL + ++ EEIK+ Y+ L +KYHPDKN E ++ F +++EA+ +L D ++R
Sbjct: 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKR 60
Query: 58 KLYE 61
+ Y+
Sbjct: 61 ESYD 64
>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional.
Length = 291
Score = 64.2 bits (156), Expect = 4e-13
Identities = 24/63 (38%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPD--KNSEHQEMFLKINEAWNILKDEKERKL 59
+++ IL N++ +EIK+ +K L KYHPD K+ +E F +INEA+ +L D ++R++
Sbjct: 5 DYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRI 64
Query: 60 YES 62
Y++
Sbjct: 65 YDT 67
>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ. This model
represents bacterial forms of DnaJ, part of the
DnaK-DnaJ-GrpE chaperone system. The three components
typically are encoded by consecutive genes. DnaJ
homologs occur in many genomes, typically not near DnaK
and GrpE-like genes; most such genes are not included
by this family. Eukaryotic (mitochondrial and
chloroplast) forms are not included in the scope of
this family.
Length = 354
Score = 63.4 bits (155), Expect = 7e-13
Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 4 FEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQ--EMFLKINEAWNILKDEKERKLY 60
+EIL + +++ EEIK+ Y+ L KYHPD+N + + E F +INEA+ +L D ++R Y
Sbjct: 3 YEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQY 61
>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional.
Length = 371
Score = 62.6 bits (152), Expect = 2e-12
Identities = 26/63 (41%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEH--QEMFLKINEAWNILKDEKERK 58
M+++E+L + ++ +EIK Y+ L LKYHPD+N E E F +INEA+ +L D ++R
Sbjct: 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRA 61
Query: 59 LYE 61
Y+
Sbjct: 62 HYD 64
>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional.
Length = 386
Score = 61.7 bits (150), Expect = 3e-12
Identities = 28/63 (44%), Positives = 42/63 (66%), Gaps = 3/63 (4%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERK 58
+++EIL + N+T EEIK+ Y+ L KYHPD N E ++ F +INEA+ IL D ++R
Sbjct: 6 DYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRA 65
Query: 59 LYE 61
Y+
Sbjct: 66 QYD 68
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional.
Length = 371
Score = 60.5 bits (148), Expect = 8e-12
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
Query: 4 FEILNCNVNSTLEEIKENYKSLILKYHPDKNS---EHQEMFLKINEAWNILKDEKERKLY 60
+E+L + N++ +EIK+ Y+ L +KYHPD+N E +E F +I EA+ +L D ++R Y
Sbjct: 7 YEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAY 66
>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional.
Length = 369
Score = 60.5 bits (146), Expect = 1e-11
Identities = 30/64 (46%), Positives = 45/64 (70%), Gaps = 3/64 (4%)
Query: 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS---EHQEMFLKINEAWNILKDEKER 57
++++EIL +S E IK++Y+ L LKYHPD+N+ E +E F INEA+ +L DEK+R
Sbjct: 3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKR 62
Query: 58 KLYE 61
LY+
Sbjct: 63 ALYD 66
>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional.
Length = 397
Score = 60.2 bits (146), Expect = 1e-11
Identities = 24/63 (38%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERK 58
+++E+L + ++ +EIK+ Y+ L LKYHPDKN E +E F ++NEA+ +L ++ +R+
Sbjct: 4 DYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRR 63
Query: 59 LYE 61
Y+
Sbjct: 64 RYD 66
>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional.
Length = 377
Score = 59.9 bits (145), Expect = 2e-11
Identities = 25/62 (40%), Positives = 45/62 (72%), Gaps = 2/62 (3%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSE--HQEMFLKINEAWNILKDEKERKL 59
+++EIL + ++++E+IK+ Y+ L +KYHPDKN E +E F +I+EA+ +L D ++R
Sbjct: 6 DYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQ 65
Query: 60 YE 61
Y+
Sbjct: 66 YD 67
>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional.
Length = 389
Score = 59.5 bits (144), Expect = 2e-11
Identities = 24/63 (38%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERK 58
+++++L ++T EIK+ Y+ L +YHPD N ++ +E F +I+EA+++L DEK+RK
Sbjct: 10 DYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRK 69
Query: 59 LYE 61
Y+
Sbjct: 70 EYD 72
>gnl|CDD|191232 pfam05207, zf-CSL, CSL zinc finger. This is a zinc binding motif
which contains four cysteine residues which chelate
zinc. This domain is often found associated with a
pfam00226 domain. This domain is named after the
conserved motif of the final cysteine.
Length = 55
Score = 54.9 bits (133), Expect = 2e-11
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 78 VSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEI 131
V L D E E F YPCRCG EF I E+D E + +++ C +CSL +++
Sbjct: 3 VELEDFEFDEEEGSFYYPCRCGDEFEITEEDLE----EGEVVVQCPSCSLWIKV 52
>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional.
Length = 369
Score = 58.3 bits (141), Expect = 5e-11
Identities = 24/64 (37%), Positives = 44/64 (68%), Gaps = 4/64 (6%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEH----QEMFLKINEAWNILKDEKER 57
+++EIL + N+T EEIK YK L+ ++HPD++ E+ ++ F +I EA+ +L D ++R
Sbjct: 5 DYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKR 64
Query: 58 KLYE 61
+Y+
Sbjct: 65 AMYD 68
>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional.
Length = 421
Score = 57.9 bits (140), Expect = 6e-11
Identities = 23/58 (39%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 4 FEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYE 61
+E+LN + + T EIK+ Y+ L +K+HPDK + E F +I+ A+ +L D ++RK+Y+
Sbjct: 31 YEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD-PEKFKEISRAYEVLSDPEKRKIYD 87
>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional.
Length = 372
Score = 57.3 bits (138), Expect = 1e-10
Identities = 26/63 (41%), Positives = 42/63 (66%), Gaps = 3/63 (4%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERK 58
++++IL + ++ EEIK Y+ L +KYHPDKN E +E F + EA+ IL+D K+R+
Sbjct: 5 SYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQ 64
Query: 59 LYE 61
Y+
Sbjct: 65 AYD 67
>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional.
Length = 366
Score = 57.1 bits (138), Expect = 1e-10
Identities = 25/62 (40%), Positives = 43/62 (69%), Gaps = 3/62 (4%)
Query: 3 HFEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERKL 59
++EIL +++ EEIK++Y+ L +KYHPD+N E +E+F + EA+ +L D K+R +
Sbjct: 6 YYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGI 65
Query: 60 YE 61
Y+
Sbjct: 66 YD 67
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional.
Length = 380
Score = 54.8 bits (132), Expect = 9e-10
Identities = 23/63 (36%), Positives = 42/63 (66%), Gaps = 3/63 (4%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERK 58
+++E+L ++ +EIK+ ++ L +KYHPDKN E +E F +INEA+ +L D +++
Sbjct: 5 DYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKA 64
Query: 59 LYE 61
Y+
Sbjct: 65 QYD 67
>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional.
Length = 378
Score = 53.7 bits (129), Expect = 2e-09
Identities = 23/62 (37%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEH--QEMFLKINEAWNILKDEKERKL 59
+++E+L + N+ +EIK+ Y+ L KYHPD + E +E F +I+EA+ +L D+++R+
Sbjct: 6 DYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQR 65
Query: 60 YE 61
Y+
Sbjct: 66 YD 67
>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional.
Length = 386
Score = 53.3 bits (128), Expect = 3e-09
Identities = 22/63 (34%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERK 58
+++E+L + +T++EIK+ Y+ ++YHPDKN E +E F + EA+++L D +R
Sbjct: 6 DYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRS 65
Query: 59 LYE 61
Y+
Sbjct: 66 RYD 68
>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional.
Length = 376
Score = 52.8 bits (127), Expect = 4e-09
Identities = 23/62 (37%), Positives = 42/62 (67%), Gaps = 2/62 (3%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEH--QEMFLKINEAWNILKDEKERKL 59
+++E+L + +++ +EIK+ Y+ L KYHPD N E E F +I+EA+ +L D+++R
Sbjct: 5 DYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQ 64
Query: 60 YE 61
Y+
Sbjct: 65 YD 66
>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional.
Length = 365
Score = 51.9 bits (124), Expect = 8e-09
Identities = 21/64 (32%), Positives = 44/64 (68%), Gaps = 4/64 (6%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN----SEHQEMFLKINEAWNILKDEKER 57
++++IL + N++ E+IK+ ++ L K+HPD + +E +E F +I+EA+ +L D ++R
Sbjct: 4 DYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKR 63
Query: 58 KLYE 61
+ Y+
Sbjct: 64 RQYD 67
>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional.
Length = 373
Score = 50.9 bits (122), Expect = 2e-08
Identities = 21/63 (33%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERK 58
+++E+L + +++ +EIK+ Y+ L L+YHPD+N E ++ F + EA+ +L+D ++R
Sbjct: 5 DYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRA 64
Query: 59 LYE 61
Y+
Sbjct: 65 RYD 67
>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional.
Length = 306
Score = 50.6 bits (121), Expect = 2e-08
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPD--KNSEHQEMFLKINEAWNILKDEKERKL 59
+++ I+ L+ IK Y+ L KYHPD K + + F ++ EAW +L DE+ R
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 60 YESQLLSQ------QQTHMNIYKSVSLSD 82
Y+ + +Q +S + D
Sbjct: 65 YDQLWQHRNDPQFNRQFQHGDGQSFNAED 93
>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional.
Length = 374
Score = 50.0 bits (120), Expect = 4e-08
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 4 FEILNCNVNSTLEEIKENYKSLILKYHPDKNSE--HQEMFLKINEAWNILKDEKERKLYE 61
+EIL + ++ +E+K Y+ L KYHPD N E ++ F +IN A+ +L D + R Y+
Sbjct: 6 YEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYD 65
>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional.
Length = 392
Score = 49.7 bits (119), Expect = 5e-08
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 12 NSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERKLYE 61
+++ EEIK+ Y+ L + HPD N +E F ++EA ++L D +RK Y+
Sbjct: 20 DASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYD 72
>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional.
Length = 371
Score = 49.6 bits (118), Expect = 6e-08
Identities = 19/62 (30%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEH--QEMFLKINEAWNILKDEKERKL 59
+++E+L + N++++E+K+ Y+ L KYHPD N ++ F ++ EA++ L D +++
Sbjct: 5 DYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAH 64
Query: 60 YE 61
Y+
Sbjct: 65 YD 66
>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional.
Length = 380
Score = 49.3 bits (118), Expect = 6e-08
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 4 FEILNCNVNSTLEEIKENYKSLILKYHPDKNSE--HQEMFLKINEAWNILKDEKERKLYE 61
++ L + +++ +EIK+ Y+ L KYHPD N E +E + ++ EA+ L D ++R Y+
Sbjct: 7 YDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYD 66
>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional.
Length = 378
Score = 49.3 bits (118), Expect = 7e-08
Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN--SEHQEMFLKINEAWNILKDEKERKL 59
+++ +L + N++ EIK Y+ L + HPD N E QE F +I+ A+ +L D ++R++
Sbjct: 4 DYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRI 63
Query: 60 YE 61
+
Sbjct: 64 VD 65
>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional.
Length = 372
Score = 48.8 bits (116), Expect = 1e-07
Identities = 20/62 (32%), Positives = 42/62 (67%), Gaps = 2/62 (3%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPD--KNSEHQEMFLKINEAWNILKDEKERKL 59
+++E+L + ++ +EI++ Y+ L +YHPD K+ + + ++INEA ++L D+ +RK
Sbjct: 5 DYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQ 64
Query: 60 YE 61
Y+
Sbjct: 65 YD 66
>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional.
Length = 365
Score = 48.4 bits (115), Expect = 1e-07
Identities = 22/63 (34%), Positives = 42/63 (66%), Gaps = 3/63 (4%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQE---MFLKINEAWNILKDEKERK 58
+++EIL + ++ +EIK+ Y+ + +KYHPDKN ++E +F + EA+ +L D+ +R
Sbjct: 4 DYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRA 63
Query: 59 LYE 61
Y+
Sbjct: 64 QYD 66
>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular
trafficking and secretion].
Length = 610
Score = 45.7 bits (108), Expect = 1e-06
Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 8/65 (12%)
Query: 4 FEILNCNVNSTLEEIKENYKSLILKYHPDK--------NSEHQEMFLKINEAWNILKDEK 55
+EIL + +++ +IK+ Y+ L +K+HPDK SE++E + I +A+ +L D+K
Sbjct: 101 YEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKK 160
Query: 56 ERKLY 60
R+ Y
Sbjct: 161 RRENY 165
>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional.
Length = 372
Score = 45.4 bits (107), Expect = 2e-06
Identities = 19/62 (30%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEH--QEMFLKINEAWNILKDEKERKL 59
++++IL + ++ ++K+ Y L +YHPD ++ F +IN A+++LKDE++R
Sbjct: 4 DYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAA 63
Query: 60 YE 61
Y+
Sbjct: 64 YD 65
>gnl|CDD|227541 COG5216, COG5216, Uncharacterized conserved protein [Function
unknown].
Length = 67
Score = 41.4 bits (97), Expect = 5e-06
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 72 MNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEI 131
M+ Y + + D E + FTYPC CG F I +D + ++ C +CSL++ +
Sbjct: 1 MSFYDEIEIEDFTFSREEKTFTYPCPCGDRFEISLEDLR----NGEVVARCPSCSLIVCV 56
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 42.1 bits (98), Expect = 2e-05
Identities = 21/62 (33%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS--EHQEMFLKINEAWNILKDEKERKL 59
+++E+L + ++ +EIK+ ++ L KYHPD+N + +F +INEA ++L + K+R
Sbjct: 3 DYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRAN 62
Query: 60 YE 61
Y+
Sbjct: 63 YD 64
>gnl|CDD|240265 PTZ00100, PTZ00100, DnaJ chaperone protein; Provisional.
Length = 116
Score = 38.7 bits (90), Expect = 1e-04
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 4 FEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNIL 51
++ILN + ++ E I+E +K L+L+ HPD N + K+NEA ++L
Sbjct: 68 YKILNISPTASKERIREAHKQLMLRNHPD-NGGSTYIASKVNEAKDLL 114
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 37.5 bits (86), Expect = 0.001
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 3 HFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEM--FLKINEAWNILKDEKERKLY 60
++IL VN+ ++EI E Y L Y+P K S ++ F KINEA+ IL D ++K+Y
Sbjct: 575 FYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMY 634
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation,
ribosomal structure and biogenesis / Posttranslational
modification, protein turnover, chaperones].
Length = 379
Score = 37.3 bits (86), Expect = 0.001
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 16 EEIKENYKSLILKYHPDK-----NSEHQEMFLKINEAWNILKDEKERKLYES 62
+I + +K + KYHPDK N E F I +A +L D K R Y+S
Sbjct: 61 PQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDS 112
>gnl|CDD|167217 PRK01356, hscB, co-chaperone HscB; Provisional.
Length = 166
Score = 34.1 bits (78), Expect = 0.010
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 8/67 (11%)
Query: 2 NHFEILNC--NVNSTLEEIKENYKSLILKYHPD--KNSEHQEMFLKI----NEAWNILKD 53
N+F++L N L+ +++ Y ++ +KYHPD K + +E L I N A++ LKD
Sbjct: 3 NYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKD 62
Query: 54 EKERKLY 60
+R Y
Sbjct: 63 ALKRAEY 69
>gnl|CDD|179914 PRK05014, hscB, co-chaperone HscB; Provisional.
Length = 171
Score = 30.6 bits (70), Expect = 0.13
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 13/78 (16%)
Query: 1 MNHFEILNCNVNSTL--EEIKENYKSLILKYHPDK--NSEHQEMFL------KINEAWNI 50
M++F + + + + Y+ L ++HPDK N+ +E L IN+A+
Sbjct: 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQT 60
Query: 51 LKDEKERKLYESQLLSQQ 68
LK +R Y LLS
Sbjct: 61 LKHPLKRAEY---LLSLH 75
>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1
[Posttranslational modification, protein turnover,
chaperones].
Length = 174
Score = 30.4 bits (69), Expect = 0.19
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 15 LEEIKENYKSLILKYHPDKNSEHQEM--------FLKINEAWNILKDEKERKLY 60
L+ +K Y+ L YHPD+ + E ++N A+ LKD R Y
Sbjct: 17 LDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEY 70
>gnl|CDD|181927 PRK09522, PRK09522, bifunctional glutamine
amidotransferase/anthranilate phosphoribosyltransferase;
Provisional.
Length = 531
Score = 29.2 bits (65), Expect = 0.66
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
Query: 27 LKYHPDKNSEHQ-EMFLKINEAWNILKDEKE-------RKLYESQLLSQQQTH 71
++HP+ Q L+ AW K E KLY++Q LSQQ++H
Sbjct: 167 FQFHPESILTTQGARLLEQTLAWAQQKLEPTNTLQPILEKLYQAQTLSQQESH 219
>gnl|CDD|213527 TIGR00390, hslU, ATP-dependent protease HslVU, ATPase subunit.
This model represents the ATPase subunit of HslVU, while
the proteasome-related peptidase subunit is HslV.
Residues 54-61 of the model contain a P-loop ATP-binding
motif. Cys-287 of E. coli (position 308 in the seed
alignment), studied in MEDLINE:98389714, is Ser in other
members of the seed alignment [Protein fate, Protein
folding and stabilization].
Length = 441
Score = 29.0 bits (65), Expect = 0.71
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 10 NVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ 68
+EE+ N +SL PDK + + LKI EA L E+ KL + + + Q+
Sbjct: 185 MAPPGMEEMTMNLQSLFQNLGPDKKKKRK---LKIKEAKKALIAEEAAKLVDPEEIKQE 240
>gnl|CDD|222912 PHA02624, PHA02624, large T antigen; Provisional.
Length = 647
Score = 28.4 bits (64), Expect = 1.1
Identities = 10/41 (24%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 14 TLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDE 54
L +++ Y +YHPDK + ++M ++N + L++
Sbjct: 26 NLPLMRKAYLRKCKEYHPDKGGDEEKM-KRLNSLYKKLQEG 65
>gnl|CDD|224141 COG1220, HslU, ATP-dependent protease HslVU (ClpYQ), ATPase subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 444
Score = 27.2 bits (61), Expect = 2.9
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 15 LEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ 68
+EE+ N + + K + + LK+ EA +L +E+ KL + + + Q+
Sbjct: 193 MEEMTNNLQDMFGNLGGKKKKKRK---LKVKEAKKLLIEEEADKLIDQEEIKQE 243
>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional.
Length = 267
Score = 27.1 bits (61), Expect = 3.0
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 4 FEILNCNVNSTLEEIKENYKSLILKYHPDK 33
+++L + + +EIK Y+ L+ ++HPDK
Sbjct: 203 YKVLGVSESDDDQEIKRAYRKLMSEHHPDK 232
>gnl|CDD|235031 PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase;
Provisional.
Length = 381
Score = 27.1 bits (61), Expect = 3.4
Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 13/62 (20%)
Query: 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKI-----NEAWNILKDEK 55
+ I V LEE +++K + EH KI N L D+
Sbjct: 238 ILDPSIRA-VVKGALEESGA----VLIKKYGFDKEEHAAYIEKILGRFENPY---LSDDV 289
Query: 56 ER 57
ER
Sbjct: 290 ER 291
>gnl|CDD|235757 PRK06260, PRK06260, threonine synthase; Validated.
Length = 397
Score = 26.8 bits (60), Expect = 3.5
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 11/34 (32%)
Query: 98 CGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEI 131
CG E+ D I+ C C LLE+
Sbjct: 9 CGKEY-----------DPDEIIYTCPECGGLLEV 31
>gnl|CDD|214703 smart00508, PostSET, Cysteine-rich motif following a subset of SET
domains.
Length = 17
Score = 24.3 bits (54), Expect = 3.6
Identities = 6/9 (66%), Positives = 6/9 (66%)
Query: 95 PCRCGAEFC 103
PC CGA C
Sbjct: 4 PCLCGAPNC 12
>gnl|CDD|211373 cd09262, AP_stonin-1_MHD, Mu homology domain (MHD) of
adaptor-like protein (AP-like), stonin-1 (also called
Stoned B-like factor). A small family of proteins
named stonins has been characterized as
clathrin-dependent AP-2 mu2 chain related factors,
which may act as cargo-specific sorting adaptors in
endocytosis. Stonins include stonin 1 and stonin 2,
which are the only mammalian homologs of Drosophila
stoned B, a presynaptic protein implicated in
neurotransmission and synaptic vesicle (SV) recycling.
They are conserved from C. elegans to humans, but are
not found in prokaryotes or yeasts. This family
corresponds to the mu homology domain of stonin 1,
which is distantly related to the C-terminal domain of
mu chains among AP complexes. Due to the low degree of
sequence conservation of the corresponding binding
site, the mu homology domain of stonin-1 is unable to
recognize tyrosine-based endocytic sorting signals. To
data, little is known about the localization and
function of stonin-1.
Length = 309
Score = 26.7 bits (59), Expect = 4.4
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 29 YHPDKNSEHQEMFLKI-NEAWNILKDEKERKLYESQLLSQ 67
+N E QE+ L+I + W + +KE K+ ES +++Q
Sbjct: 2 SKQKRNYEEQELSLEIVDHFW--GRVDKEGKVMESSVITQ 39
>gnl|CDD|184908 PRK14944, PRK14944, DNA polymerase III subunit beta; Provisional.
Length = 375
Score = 26.7 bits (59), Expect = 4.6
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 12/52 (23%)
Query: 4 FEILNCNV---NSTLEEIKENYKSLILKYHPDKN----SEHQEMFLKINEAW 48
F N N+ N +LEE+ S IL+Y+ KN S+ +++FLKI+ W
Sbjct: 189 FNYHNFNIVIPNKSLEEL-----SKILEYYQSKNLKIYSDSKKIFLKIDNLW 235
>gnl|CDD|235231 PRK04160, PRK04160, diphthine synthase; Provisional.
Length = 258
Score = 26.4 bits (59), Expect = 5.2
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 11/51 (21%)
Query: 13 STLEEIKENYKS-----LILKYHPDKNSEHQEMFLKINEAWNILKDEKERK 58
S + IK+N + ++L D ++ NEA +L + +E++
Sbjct: 147 SPYDVIKDNLERGLHTLVLLDIKADG------RYMTANEALELLLELEEKR 191
>gnl|CDD|222936 PHA02855, PHA02855, anti-apoptotic membrane protein; Provisional.
Length = 180
Score = 26.3 bits (58), Expect = 5.3
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINE 46
+ + LN N L IKE + + Y + N F+K+N+
Sbjct: 25 IGEKKSLNNYENKILNLIKECCEVIKKNYKTNFNEICN--FIKVND 68
>gnl|CDD|173239 PRK14778, PRK14778, lipoprotein signal peptidase; Provisional.
Length = 186
Score = 25.9 bits (57), Expect = 6.1
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 49 NILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDMEHKGESQ 90
++ +K R L + + T ++I S SD + E Q
Sbjct: 142 SLESRKKRRGLETGSVFEGEDTVLDIEIVDSKSDKRGQSEGQ 183
>gnl|CDD|222986 PHA03102, PHA03102, Small T antigen; Reviewed.
Length = 153
Score = 25.8 bits (57), Expect = 7.0
Identities = 9/42 (21%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 14 TLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEK 55
L +++ Y L++HPDK + ++M ++N + ++
Sbjct: 20 NLPLMRKAYLRKCLEFHPDKGGDEEKM-KELNTLYKKFRESV 60
>gnl|CDD|215140 PLN02251, PLN02251, pyrophosphate-dependent phosphofructokinase.
Length = 568
Score = 25.9 bits (57), Expect = 7.8
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 61 ESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCG 99
E L+ +T + K KG+S F Y RCG
Sbjct: 408 EKMLIQMVETELEKRKQEGSYKGHFKGQSHFFGYEGRCG 446
>gnl|CDD|219266 pfam07006, DUF1310, Protein of unknown function (DUF1310). This
family consists of several hypothetical proteins of
around 125 residues in length. Members of this family
seem to be specific to Listeria and Streptococcus
species. The function of this family is unknown.
Length = 122
Score = 25.3 bits (56), Expect = 8.6
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 24 SLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQL 64
L K++ D++ E +EM I E+ +K++E L
Sbjct: 16 GLGGKFYMDEHKEKEEM-------IAIAHSEEAKKVFEKGL 49
>gnl|CDD|211601 TIGR00714, hscB, Fe-S protein assembly co-chaperone HscB. This
model describes the small subunit, Hsc20 (20K heat
shock cognate protein) of a pair of proteins
Hsc66-Hsc20, related to the DnaK-DnaJ heat shock
proteins, which also serve as molecular chaperones.
Hsc20, unlike DnaJ, appears not to have chaperone
activity on its own, but to act solely as a regulatory
subunit for Hsc66 (i.e., to be a co-chaperone). The
gene for Hsc20 in E. coli, hscB, is not induced by heat
shock [Protein fate, Protein folding and
stabilization].
Length = 155
Score = 25.6 bits (56), Expect = 8.7
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 22 YKSLILKYHPDKNSEHQEMFL------KINEAWNILKDEKERKLYESQLLSQQ 68
Y+ L +YHPD + QE +N+A++ LKD R Y +LL+
Sbjct: 12 YRQLQAQYHPDASGMAQEQLAASQQSTTLNQAYHTLKDPLRRAEYMLKLLNID 64
>gnl|CDD|198381 cd10434, GIY-YIG_UvrC_Cho, Catalytic GIY-YIG domain of nucleotide
excision repair endonucleases UvrC, Cho, and similar
proteins. UvrC is essential for nucleotide excision
repair (NER). The N-terminal catalytic GIY-YIG domain
of UvrC (also known as Uri domain) is responsible for
the 3' incision reaction and the C-terminal half of
UvrC, consisting of an UvrB-binding domain (UvrBb),
EndoV-like nuclease domain and a helix-hairpin-helix
(HhH) DNA-binding domain, contains the residues
involved in 5' incision. The N- and C-terminal regions
are joined by a common Cys-rich domain containing four
conserved Cys residues. Besides UvrC, protein Cho (UvrC
homolog) serves as a second endonuclease in E. coli
NER. Cho contains GIY-YIG motif followed by a Cys-rich
region and shares sequence homology with the N-terminal
half of UvrC. It is capable of incising the DNA at the
3' side of a lesion in the presence of the UvrA and
UvrB proteins during NER. The C-terminal half of Cho is
a unique uncharacterized domain, which is distinct from
that of UvrC. Moreover, unlike UvrC, Cho does not
require the UvrC-binding domain of UvrB for the 3'
incision reaction, which might cause the shift in
incision position and the difference in incision
efficiencies between Cho and UvrC on different damaged
substrates. Due to this, the range of NER in E. coli
can be broadened by combining action of Cho and UvrC.
This family also includes many uncharacterized epsilon
proofreading subunits of DNA polymerase III, which have
an additional N-terminal ExoIII domain and a 3'-5'
exonuclease domain homolog, fused to an UvrC-like
region or a Cho-like region. The UvrC-like region
includes a GIY-YIG motif, followed by a Cys-rich
region, and an UvrB-binding domain (UvrBb), but lacks
the EndoV-like nuclease domain and the
helix-hairpin-helix (HhH) DNA-binding domain. The
Cho-like region consists of a GIY-YIG motif, followed
by the Cys-rich region, and the unique uncharacterized
domain presenting in the C-terminal half of Cho. Some
family members may not carry the Cys-rich region. This
family also includes a specific Cho-like protein from
G. violaceus, which possesses only UvrBb domain at the
C-terminus, but lacks the additional N-terminal ExoIII
domain. The oother two remote homologs of UvrC,
Bacillus-I and -II, are included in this family as
well. Both of them contain a GIY-YIG domain, but no
Cys-rich region. Moreover, the whole C-terminal region
of Bacillus-I is replaces by an unknown domain, and
Bacillus-II possesses another unknown N-terminal
extension.
Length = 81
Score = 24.8 bits (55), Expect = 8.8
Identities = 8/45 (17%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 31 PDKNSEHQEMFLKINE-AWNILKDEKERKLYESQLLSQQQTHMNI 74
+ + + + +I + + + E E L E+ L+ + + NI
Sbjct: 37 ERHSPKTRRLVEEIRDIEYIVTDSELEALLLEANLIKKYKPRYNI 81
>gnl|CDD|166894 PRK00294, hscB, co-chaperone HscB; Provisional.
Length = 173
Score = 25.2 bits (55), Expect = 9.9
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 15 LEEIKENYKSLILKYHPDK---NSEHQ-----EMFLKINEAWNILKDEKERKLY 60
L+++ Y+ L + HPD+ E + E +NEA+ LK R Y
Sbjct: 20 LDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARY 73
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.130 0.379
Gapped
Lambda K H
0.267 0.0892 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,267,030
Number of extensions: 516753
Number of successful extensions: 688
Number of sequences better than 10.0: 1
Number of HSP's gapped: 648
Number of HSP's successfully gapped: 91
Length of query: 134
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 48
Effective length of database: 7,123,158
Effective search space: 341911584
Effective search space used: 341911584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.3 bits)