RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7548
(134 letters)
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain,
chaperone; NMR {Homo sapiens}
Length = 155
Score = 112 bits (281), Expect = 6e-33
Identities = 41/140 (29%), Positives = 76/140 (54%), Gaps = 15/140 (10%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS---------EHQEMFLKINEAWNILK 52
+ + IL + ++ + ++K+ Y+ LIL YHPDK S E + F++I++AW IL
Sbjct: 11 DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70
Query: 53 DEKERKLYESQLLSQQQTHM-NIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEG 111
+E+ ++ Y+ Q ++ + V L +M F CRCG ++ + +
Sbjct: 71 NEETKREYDLQRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCGGKYSVSK----- 125
Query: 112 DSSDDNILIACDTCSLLLEI 131
D +++ LI+CDTCSL++E+
Sbjct: 126 DEAEEVSLISCDTCSLIIEL 145
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5,
structural genomics, PSI-2, protein structure
initiative; 1.25A {Saccharomyces cerevisiae}
Length = 92
Score = 65.4 bits (160), Expect = 3e-15
Identities = 21/57 (36%), Positives = 39/57 (68%)
Query: 4 FEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLY 60
+++L + ++ +E+K+ Y+ LKYHPDK + E F +I+EA+ IL D ++R++Y
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIY 67
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone,
APC90013.2, structural genomics, protein structure
initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Length = 73
Score = 64.6 bits (158), Expect = 3e-15
Identities = 21/57 (36%), Positives = 41/57 (71%)
Query: 4 FEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLY 60
+++L +++ E+K+ Y+ + LK+HPDKN + E F +I++A+ +L DEK+R++Y
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIY 67
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 112
Score = 65.5 bits (160), Expect = 4e-15
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 4 FEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERKLY 60
+ +L C+ S++E+I +K L+ HPDK+ + E F K+ +A IL +E+ R Y
Sbjct: 23 YTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARY 82
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated
protein RAP1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 90
Score = 64.0 bits (156), Expect = 8e-15
Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEH--QEMFLKINEAWNILKDEKERKL 59
+ +++L ++ +E+ + Y+ L + HPDK ++ F + A L +
Sbjct: 28 DSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP 87
Query: 60 YE 61
Sbjct: 88 SS 89
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 109
Score = 62.8 bits (153), Expect = 5e-14
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 4 FEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERKLY 60
+ +L + N+T ++IK++Y+ L LKYHPDKN E + F +IN A IL D +R +Y
Sbjct: 20 YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIY 79
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics,
molecular chaperone, NPPSFA; NMR {Mus musculus}
Length = 88
Score = 61.2 bits (149), Expect = 8e-14
Identities = 19/59 (32%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 4 FEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQ--EMFLKINEAWNILKDEKERKLY 60
+ +L + ++ +IK+ YK L ++HPDKN + + F++I++A+ IL +E++R Y
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNY 78
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR
{Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Length = 103
Score = 61.5 bits (150), Expect = 1e-13
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 4 FEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERKLY 60
+EIL + + EI++ YK L +KYHPD+N E + F +I EA+ +L D ++R Y
Sbjct: 6 YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAY 65
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ
domain, endoplasmic reticulum, oxidor; 1.84A {Mus
musculus}
Length = 210
Score = 64.1 bits (156), Expect = 1e-13
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 5 EILNCNVNSTLEEIKENYKSLILKYHPDKNS---EHQEMFLKINEAWNILKDEKERKLY 60
+L + ++ EI++ +K L LK HPDKN FLKIN A+ +LKDE RK Y
Sbjct: 6 SLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 64
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain,
helix-turn-helix motif, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 92
Score = 61.2 bits (149), Expect = 1e-13
Identities = 23/61 (37%), Positives = 40/61 (65%), Gaps = 4/61 (6%)
Query: 4 FEILNCNVNSTLEEIKENYKSLILKYHPDKN----SEHQEMFLKINEAWNILKDEKERKL 59
+E+L +++ E+IK+ Y+ L L++HPDKN E ++ F ++EA+ +L D K+R L
Sbjct: 12 YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSL 71
Query: 60 Y 60
Y
Sbjct: 72 Y 72
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 82
Score = 60.7 bits (148), Expect = 1e-13
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 4 FEILNCNVNSTLEEIKENYKSLILKYHPDKN----SEHQEMFLKINEAWNILKDEKERKL 59
+E+L+ ++ E IK+ Y+ L LK+HPDKN E + F ++ EA+ +L D K+R +
Sbjct: 12 YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDI 71
Query: 60 Y 60
Y
Sbjct: 72 Y 72
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 77
Score = 60.3 bits (147), Expect = 2e-13
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 4 FEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQ--EMFLKINEAWNILKDEKERKLY 60
++ L ++ EEIK Y+ L+YHPDKN E E F +I EA+++L D ++R+++
Sbjct: 6 YQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIF 64
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, chaperone; NMR {Mus musculus} SCOP:
a.2.3.1
Length = 94
Score = 60.9 bits (148), Expect = 2e-13
Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 9/66 (13%)
Query: 4 FEILNCNVNSTLEEIKENYKSLILKYHPDKNS---------EHQEMFLKINEAWNILKDE 54
+ IL + ++ + ++K+ Y+ LIL YHPDK S E + F++I++AW IL +E
Sbjct: 19 YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78
Query: 55 KERKLY 60
+ +K Y
Sbjct: 79 ETKKKY 84
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain,
all helix protein, chaperone, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 60.9 bits (148), Expect = 2e-13
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 4 FEILNCNVNSTLEEIKENYKSLILKYHPDKNS---EHQEMFLKINEAWNILKDEKERKLY 60
+++L +T +IK Y YHPD+NS E E F +I++A+ +L R+ Y
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKY 79
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 60.0 bits (146), Expect = 2e-13
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 4 FEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERKLY 60
++IL N++ +EIK+ Y L KYHPD N + +E F ++ EA+ +L DE +RK Y
Sbjct: 10 YQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQY 69
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon,
chaperone; NMR {Homo sapiens}
Length = 99
Score = 60.0 bits (146), Expect = 3e-13
Identities = 20/61 (32%), Positives = 42/61 (68%), Gaps = 4/61 (6%)
Query: 4 FEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQE----MFLKINEAWNILKDEKERKL 59
+EIL+ +++ ++IK+ Y+ L++HPDKN +++E F ++ EA+ +L D+ +R++
Sbjct: 5 YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64
Query: 60 Y 60
Y
Sbjct: 65 Y 65
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 78
Score = 59.6 bits (145), Expect = 4e-13
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 4 FEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQ--EMFLKINEAWNILKDEKERKLY 60
+EIL + ++ E++K+ Y+ L LK+HPDKN E F I A+ +L + ++RK Y
Sbjct: 10 YEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQY 68
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 88
Score = 59.2 bits (144), Expect = 5e-13
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 4 FEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQ--EMFLKINEAWNILKDEKERKLY 60
++IL +++ +IK+ + L +KYHPDKN F +I EA+ L D RK Y
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEY 68
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces
cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Length = 83
Score = 58.7 bits (142), Expect = 9e-13
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 72 MNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEI 131
++ Y + + DM + E+QMFTYPC CG F I D + + C +CSL++++
Sbjct: 2 VSTYDEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMF----EGEKVAVCPSCSLMIDV 57
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics,
PSI-2, protein STRU initiative; 2.90A {Klebsiella
pneumoniae subsp} PDB: 2kqx_A
Length = 329
Score = 61.5 bits (150), Expect = 2e-12
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 5 EILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQ--EMFLKINEAWNILKDEKERKLY 60
IL L+ IK Y+ L KYHPD + E+ F + EAW +LKDE+ R Y
Sbjct: 32 AILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEY 89
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger,
ADP-ribosylating toxin, structural genomics, NPPSFA; NMR
{Mus musculus} SCOP: g.41.17.1
Length = 83
Score = 57.6 bits (139), Expect = 3e-12
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 66 SQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDSSDDNILIACDTC 125
S + V + D ++ +S+ + YPC CG F I ++D E + + C +C
Sbjct: 3 SGSSGMAVFHDEVEIEDFQYDEDSETYFYPCPCGDNFAITKEDLE----NGEDVATCPSC 58
Query: 126 SLLLEI 131
SL++++
Sbjct: 59 SLIIKV 64
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural
genomics, PSI-2, Pro structure initiative; 1.68A
{Caenorhabditis elegans}
Length = 109
Score = 57.8 bits (140), Expect = 4e-12
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 2 NHFEILNCNVNS-TLEEIKENYKSLILKYHPDKN------SEHQEMFLKINEAWNILKDE 54
N +++L N +++ + Y++L K+HPD+ +E F I A+ LKD+
Sbjct: 16 NCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDD 75
Query: 55 KERKLYESQLLSQQQTHMNIY 75
+ + Y+ L Q N Y
Sbjct: 76 EAKTNYDYYLDHPDQRFYNYY 96
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 60.5 bits (146), Expect = 6e-12
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 4 FEILNCNVNSTLEEIKENYKSLILKYHPDKNSEH---QEMFLKINEAWNILKDEKERKLY 60
+ +L + ++ EI++ +K L LK HPDKN + FLKIN A+ +LKDE RK Y
Sbjct: 24 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 83
Query: 61 ESQLLSQQQTHMNIYKSVSLSDMEHKG 87
+ + + G
Sbjct: 84 DKYGEKGLEDNQGGQYESWSYYRYDFG 110
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Length = 181
Score = 57.7 bits (139), Expect = 2e-11
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 2 NHFEILNCNVNSTL-------EEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDE 54
+E+ L +++ Y+ L ++HPD + E +N+A++ LKD
Sbjct: 12 TFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDP 71
Query: 55 KERKLYESQL 64
R Y +L
Sbjct: 72 LRRSQYMLKL 81
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor
protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Length = 114
Score = 55.6 bits (134), Expect = 2e-11
Identities = 9/52 (17%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 10 NVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYE 61
+ + +++ Y ++HPDK + +E K+N + ++D +
Sbjct: 19 SAWGNIPLMRKAYLKKCKEFHPDKGGD-EEKMKKMNTLYKKMEDGVKYAHQP 69
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP:
a.2.3.1 PDB: 1xi5_J
Length = 182
Score = 56.8 bits (136), Expect = 4e-11
Identities = 15/53 (28%), Positives = 33/53 (62%), Gaps = 6/53 (11%)
Query: 14 TLEEIKENYKSLILKYHPDKNSEH------QEMFLKINEAWNILKDEKERKLY 60
T E++K+ Y+ +L HPDK + + +F+++N+AW+ +++ ++ LY
Sbjct: 130 TPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14;
DNAJ-fold, chaperone, protein transport; HET: FLC;
2.00A {Saccharomyces cerevisiae}
Length = 71
Score = 53.9 bits (130), Expect = 5e-11
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 4 FEILNCNVNS-TLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERK 58
+ILN N+ T +++KE ++ ++L HPDK + KINEA + L+ K
Sbjct: 17 LQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSP-FLATKINEAKDFLEKRGISK 71
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase
regulat protein complex; 3.10A {Simian virus 40} PDB:
2pkg_C
Length = 174
Score = 55.7 bits (134), Expect = 8e-11
Identities = 10/63 (15%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 1 MNHFEILNCNVN--STLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERK 58
+ ++L + + +++ Y ++HPDK + +E K+N + ++D +
Sbjct: 11 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-EEKMKKMNTLYKKMEDGVKYA 69
Query: 59 LYE 61
Sbjct: 70 HQP 72
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR
{Homo sapiens}
Length = 89
Score = 53.4 bits (128), Expect = 1e-10
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 74 IYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEI 131
+ V + D ++ +S+ + YPC CG F I ++D E + + C +CSL++++
Sbjct: 4 FHDEVEIEDFQYDEDSETYFYPCPCGDNFSITKEDLE----NGEDVATCPSCSLIIKV 57
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A
{Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Length = 171
Score = 55.0 bits (132), Expect = 2e-10
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 10/74 (13%)
Query: 1 MNHFEILNCNVNSTL--EEIKENYKSLILKYHPDKNSEHQE--------MFLKINEAWNI 50
M++F + L + + ++ L +YHPDK + + IN+AW
Sbjct: 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQT 60
Query: 51 LKDEKERKLYESQL 64
L+ R Y L
Sbjct: 61 LRHPLMRAEYLLSL 74
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304,
center for structural genomics of infectious diseases,
CSGI; 2.15A {Vibrio cholerae}
Length = 174
Score = 53.8 bits (129), Expect = 4e-10
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 10/74 (13%)
Query: 1 MNHFEILNCNVNSTL--EEIKENYKSLILKYHPDKNSEHQE--------MFLKINEAWNI 50
MN+FE+ + L + +++L ++HPD + E +IN+A+
Sbjct: 4 MNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQT 63
Query: 51 LKDEKERKLYESQL 64
LKD R Y L
Sbjct: 64 LKDPLRRAEYLLSL 77
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 88
Score = 51.3 bits (123), Expect = 7e-10
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 7/61 (11%)
Query: 5 EILNCNVNSTLEEIKENYKSLILKYHPDKN----SEHQEMFLKINEAWNILKDEKERKLY 60
++ E K+ + L LK+HPDKN E+F + N L +++
Sbjct: 20 SVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL---EKQAFL 76
Query: 61 E 61
+
Sbjct: 77 D 77
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of
helices, viral protein; NMR {Murine polyomavirus} SCOP:
a.2.3.1
Length = 79
Score = 46.9 bits (111), Expect = 3e-08
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 13 STLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ 68
+++ YK L HPDK + ++N W K E Q
Sbjct: 25 GDFGRMQQAYKQQSLLLHPDKGGS-HALMQELNSLWGTFKTEVYNLRMNLGGTGFQ 79
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 47.8 bits (114), Expect = 1e-07
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 6 ILNCNVNSTLEEIKENYKSLILKYHPDKNSEH------QEMFLKINEAWNILKDEKERKL 59
IL N+ +EI + Y+ L L++HPD ++ F+ I A +L D + RK
Sbjct: 387 ILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446
Query: 60 Y 60
+
Sbjct: 447 F 447
>2qwo_B Putative tyrosine-protein phosphatase auxilin;
chaperone-cochaperone complex, ATP-binding,
nucleotide-bindi nucleus, phosphorylation, stress
response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B*
2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Length = 92
Score = 44.6 bits (105), Expect = 3e-07
Identities = 11/45 (24%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
Query: 16 EEIKENYKSLILKYHPDKNSEHQE------MFLKINEAWNILKDE 54
E++K+ Y+ +L HP K + +F+++N+AW+ +++
Sbjct: 48 EQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFENQ 92
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural
genomics medical relev protein structure initiative,
PSI-2; 3.00A {Homo sapiens}
Length = 207
Score = 43.6 bits (102), Expect = 3e-06
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 10/71 (14%)
Query: 1 MNHFEILNCNVNSTL--EEIKENYKSLILKYHPDKNSEHQE--------MFLKINEAWNI 50
++F +++CN + + +++ Y+ L HPD S+ + +N+A+
Sbjct: 43 RDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKT 102
Query: 51 LKDEKERKLYE 61
L R LY
Sbjct: 103 LLAPLSRGLYL 113
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like
J-domain containing protein, JAC1, chloroplast
accumulation response; 1.80A {Arabidopsis thaliana}
Length = 106
Score = 41.5 bits (97), Expect = 5e-06
Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 10/51 (19%)
Query: 14 TLEEIKENYKSLILKYHPDKNSEH----------QEMFLKINEAWNILKDE 54
++++Y+ +L HPDK + +++F + EAW+
Sbjct: 53 EGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTL 103
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 7e-05
Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 33/105 (31%)
Query: 4 FEILNCNVNSTLE-----------EIKENYKSLILKYHPDKNSEHQEMFLKINEAWN--I 50
F IL+ +N+ + I+ENY ++I + D + +++F +INE
Sbjct: 1659 FSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT 1718
Query: 51 LKDEKERKLYESQLLSQ---QQ-----THMNIYKSVSLSDMEHKG 87
+ EK LLS Q ++ D++ KG
Sbjct: 1719 FRSEKG-------LLSATQFTQPALTLMEKAAFE-----DLKSKG 1751
Score = 27.3 bits (60), Expect = 2.1
Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 20/59 (33%)
Query: 10 NVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLK--INEAWNILKD-----EKERKLYE 61
N + EE+++ Y++ YH + I + L + K++
Sbjct: 165 NTDDYFEELRDLYQT----YHV---------LVGDLIKFSAETLSELIRTTLDAEKVFT 210
Score = 26.9 bits (59), Expect = 2.9
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 30/73 (41%)
Query: 21 NYKSLILKYHPDKNSEHQ------EMFLK-INEAWNILKDEKERKLYESQLLSQQQTHMN 73
NY N E+Q + L+ ++ N+L K +K+ +L
Sbjct: 1845 NY-----------NVENQQYVAAGD--LRALDTVTNVLNFIKLQKIDIIELQ-------- 1883
Query: 74 IYKSVSLSDMEHK 86
KS+SL ++E
Sbjct: 1884 --KSLSLEEVEGH 1894
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.023
Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 13/90 (14%)
Query: 8 NCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLLSQ 67
NCN T+ E+ + I ++ + L+I+ L+ + K YE+ LL
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-- 248
Query: 68 QQTHMNIYKSVSLSDMEHKGESQMFTYPCR 97
+ L ++++ F C+
Sbjct: 249 ------V-----LLNVQNAKAWNAFNLSCK 267
Score = 31.4 bits (70), Expect = 0.076
Identities = 16/128 (12%), Positives = 44/128 (34%), Gaps = 35/128 (27%)
Query: 2 NHFEILNCN-VNSTLE---------EIKENYKSL-ILKYH---PDK-------NSEHQEM 40
++++ +NC+ + + +E E ++ + L + P + ++
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 41 FLKINEAWN---ILKDEKERKLY--------ESQLLSQQQTHMNI---YKSVSLSDMEHK 86
+ +N+ + K KE + + +L ++ H +I Y D +
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464
Query: 87 GESQMFTY 94
+ Y
Sbjct: 465 IPPYLDQY 472
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16;
DNAJ-fold, chaperone, protein transport; HET: FLC;
2.00A {Saccharomyces cerevisiae}
Length = 65
Score = 27.1 bits (60), Expect = 0.53
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 8/60 (13%)
Query: 4 FEILN---CNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFL--KINEAWNILKDEKERK 58
+ILN + +++I + L +K +L K+ A LK E ++
Sbjct: 7 CKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSF---YLQSKVYRAAERLKWELAQR 63
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus
norvegicus} SCOP: a.21.1.1
Length = 83
Score = 26.5 bits (59), Expect = 1.4
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 26 ILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQ 63
K HPD + E K +E W + KE+ +E
Sbjct: 26 HKKKHPDASVNFSEFSKKCSERWKTM-SAKEKGKFEDM 62
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.5 bits (61), Expect = 1.4
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 14/41 (34%)
Query: 16 EEIKENYKSLILK--------------YHPDKNSEHQEMFL 42
+++K Y++ IL+ Y+P+K QE+ +
Sbjct: 888 KDVKAKYETSILEHSGIRLIEPELFNGYNPEKKEMIQEVIV 928
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT
DNA, protein-drug-DNA compl regulation-DNA complex;
HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1
PDB: 1j3x_A
Length = 71
Score = 25.8 bits (57), Expect = 1.7
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 26 ILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQ 63
K HPD + E K +E W + KE+ +E
Sbjct: 20 HKKKHPDASVNFSEFSKKCSERWKTM-SAKEKGKFEDM 56
>1wg2_A Zinc finger (AN1-like) family protein; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, DNA binding protein; NMR {Arabidopsis
thaliana} SCOP: g.80.1.1
Length = 64
Score = 25.6 bits (56), Expect = 1.9
Identities = 5/13 (38%), Positives = 9/13 (69%)
Query: 91 MFTYPCRCGAEFC 103
+ + C+CG+ FC
Sbjct: 27 VMGFKCKCGSTFC 39
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Length = 74
Score = 25.7 bits (56), Expect = 2.3
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 91 MFTYPCRCGAEFC 103
+ + CRCG FC
Sbjct: 37 LTGFDCRCGNLFC 49
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding,
structural genomics, riken structural
genomics/proteomics initiative; NMR {Arabidopsis
thaliana} SCOP: g.80.1.1
Length = 74
Score = 25.7 bits (56), Expect = 2.4
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 91 MFTYPCRCGAEFC 103
+ + CRCG+ FC
Sbjct: 37 VTGFKCRCGSTFC 49
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding,
structural genomics, riken structural
genomics/proteomics initiative; NMR {Arabidopsis
thaliana} SCOP: g.80.1.1
Length = 64
Score = 25.5 bits (56), Expect = 2.4
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 91 MFTYPCRCGAEFC 103
+ + CRCG FC
Sbjct: 27 LTGFMCRCGTTFC 39
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group
protein 2A, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 86
Score = 25.4 bits (56), Expect = 2.9
Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 15 LEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQ 63
++ +E +K K +P+ E K +E W + KE+ ++
Sbjct: 27 VQTCREEHK----KKNPEVPVNFAEFSKKCSERWKTM-SGKEKSKFDEM 70
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.80.1.1
Length = 85
Score = 25.3 bits (55), Expect = 3.1
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 94 YPCRCGAEFC 103
+ CRCG FC
Sbjct: 41 FECRCGNNFC 50
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 25.8 bits (56), Expect = 4.4
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 9/49 (18%)
Query: 84 EHKGESQMFTYPC-RCGAEFC-IEEQDTEGDSSDDNILIACDTCSLLLE 130
+G + C C I E+ +EGD + C C L+L
Sbjct: 12 GRRGPNLNIVLTCPECKVYPPKIVERFSEGD-------VVCALCGLVLS 53
>3klk_A Glucansucrase; native form, open conformation, multidomain protein,
glycosyltransferase, transferase; 1.65A {Lactobacillus
reuteri} PDB: 3kll_A* 3hz3_A*
Length = 1039
Score = 25.5 bits (55), Expect = 9.1
Identities = 15/85 (17%), Positives = 33/85 (38%), Gaps = 2/85 (2%)
Query: 10 NVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQ 69
NV+ L I +Y Y+ +++ + I E W K+ QL +
Sbjct: 290 NVDVDLLSIARDY--FNAAYNMEQSDASANKHINILEDWGWDDPAYVNKIGNPQLTMDDR 347
Query: 70 THMNIYKSVSLSDMEHKGESQMFTY 94
I ++S + +++ +++ T
Sbjct: 348 LRNAIMDTLSGAPDKNQALNKLITQ 372
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.130 0.379
Gapped
Lambda K H
0.267 0.0568 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,850,082
Number of extensions: 90484
Number of successful extensions: 336
Number of sequences better than 10.0: 1
Number of HSP's gapped: 296
Number of HSP's successfully gapped: 89
Length of query: 134
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 51
Effective length of database: 4,384,350
Effective search space: 223601850
Effective search space used: 223601850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.2 bits)