RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7548
(134 letters)
>d1ywsa1 g.41.17.1 (A:1-82) Diphthamide biosynthesis protein 3, DPH3
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 82
Score = 57.9 bits (140), Expect = 6e-13
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 72 MNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEI 131
M+ Y + + DM + E+QMFTYPC CG F I D + + C +CSL++++
Sbjct: 1 MSTYDEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMF----EGEKVAVCPSCSLMIDV 56
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3
(J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 94
Score = 57.0 bits (137), Expect = 2e-12
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 9/71 (12%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS---------EHQEMFLKINEAWNILK 52
+ + IL + ++ + ++K+ Y+ LIL YHPDK S E + F++I++AW IL
Sbjct: 17 DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76
Query: 53 DEKERKLYESQ 63
+E+ +K Y+ Q
Sbjct: 77 NEETKKKYDLQ 87
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId:
9913]}
Length = 98
Score = 55.7 bits (134), Expect = 5e-12
Identities = 15/65 (23%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS------EHQEMFLKINEAWNILKDEK 55
++ + T E++K+ Y+ +L HPDK + + +F+++N+AW+ +++
Sbjct: 34 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQG 93
Query: 56 ERKLY 60
++ LY
Sbjct: 94 QKPLY 98
>d1wgea1 g.41.17.1 (A:8-77) DelGEF-interacting protein 1, DelGIP1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 70
Score = 55.1 bits (133), Expect = 6e-12
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 74 IYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEI 131
+ V + D ++ +S+ + YPC CG F I ++D E + + C +CSL++++
Sbjct: 4 FHDEVEIEDFQYDEDSETYFYPCPCGDNFAITKEDLE----NGEDVATCPSCSLIIKV 57
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 76
Score = 54.3 bits (130), Expect = 1e-11
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 10/74 (13%)
Query: 1 MNHFEILNCNVNSTL--EEIKENYKSLILKYHPDKNSE--------HQEMFLKINEAWNI 50
M++F + L + + ++ L +YHPDK + + IN+AW
Sbjct: 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQT 60
Query: 51 LKDEKERKLYESQL 64
L+ R Y L
Sbjct: 61 LRHPLMRAEYLLSL 74
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 75
Score = 48.9 bits (116), Expect = 2e-09
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSE---HQEMFLKINEAWNILKDEKERK 58
+++EIL + + EI++ YK L +KYHPD+N + F +I EA+ +L D ++R
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 59 LYE 61
Y+
Sbjct: 64 AYD 66
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Murine polyomavirus [TaxId: 10634]}
Length = 79
Score = 48.5 bits (115), Expect = 3e-09
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Query: 1 MNHFEILNC--NVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERK 58
E+L + +++ YK L HPDK H + ++N W K E
Sbjct: 11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHA-LMQELNSLWGTFKTEVYNL 69
Query: 59 LY 60
Sbjct: 70 RM 71
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 45.9 bits (108), Expect = 2e-08
Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Query: 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSE--HQEMFLKINEAWNILKDEKERKL 59
++++ L ++ EEIK Y+ L+YHPDKN E +E F +I EA+++L D ++R++
Sbjct: 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREI 63
Query: 60 Y 60
+
Sbjct: 64 F 64
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 41.6 bits (97), Expect = 1e-06
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 4 FEILNCNVNSTLEEIKENYKSLILKYHPDKN----SEHQEMFLKINEAWNILKDEKERKL 59
++ E K+ + L LK+HPDKN E+F + N L+ +
Sbjct: 19 TSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQ 78
Query: 60 YESQ 63
+
Sbjct: 79 NADR 82
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Simian virus 40, Sv40 [TaxId: 10633]}
Length = 114
Score = 36.7 bits (84), Expect = 2e-04
Identities = 10/63 (15%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 1 MNHFEILNCNVN--STLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERK 58
+ ++L + + +++ Y ++HPDK +E K+N + ++D +
Sbjct: 8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKG-GDEEKMKKMNTLYKKMEDGVKYA 66
Query: 59 LYE 61
Sbjct: 67 HQP 69
>d1wfha_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing
protein At2g36320 {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 64
Score = 24.8 bits (54), Expect = 1.3
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 91 MFTYPCRCGAEFC 103
+ + CRCG FC
Sbjct: 27 LTGFMCRCGTTFC 39
>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 74
Score = 24.5 bits (53), Expect = 2.0
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 91 MFTYPCRCGAEFC 103
+ + CRCG FC
Sbjct: 37 LTGFDCRCGNLFC 49
>d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 85
Score = 23.7 bits (51), Expect = 4.3
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 94 YPCRCGAEFC 103
+ CRCG FC
Sbjct: 41 FECRCGNNFC 50
>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing
protein At1g12440 {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 74
Score = 23.7 bits (51), Expect = 4.3
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 91 MFTYPCRCGAEFC 103
+ + CRCG+ FC
Sbjct: 37 VTGFKCRCGSTFC 49
>d2ibna1 a.211.1.4 (A:37-285) Myo-inositol oxygenase MioX {Human
(Homo sapiens) [TaxId: 9606]}
Length = 249
Score = 24.0 bits (52), Expect = 8.0
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 9 CNVNSTLEEIKENYKSLILKYHPDK 33
C +++++ Y+ LI KY P
Sbjct: 222 CPDLPDVDKLRPYYQGLIDKYCPGI 246
>d2qalf1 d.58.14.1 (F:1-100) Ribosomal protein S6 {Escherichia
coli [TaxId: 562]}
Length = 100
Score = 23.2 bits (50), Expect = 8.4
Identities = 6/32 (18%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 1 MNHFE---ILNCNVNSTLEEIKENYKSLILKY 29
M H+E +++ + + + + E Y + I
Sbjct: 1 MRHYEIVFMVHPDQSEQVPGMIERYTAAITGA 32
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 71
Score = 22.5 bits (48), Expect = 9.5
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 26 ILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYE 61
K HPD + E K +E W KE+ +E
Sbjct: 20 HKKKHPDASVNFSEFSKKCSERWK-TMSAKEKGKFE 54
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.130 0.379
Gapped
Lambda K H
0.267 0.0680 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 473,572
Number of extensions: 19279
Number of successful extensions: 112
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 32
Length of query: 134
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 58
Effective length of database: 1,364,116
Effective search space: 79118728
Effective search space used: 79118728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.4 bits)