BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7549
         (104 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2I5K|A Chain A, Crystal Structure Of Ugp1p
 pdb|2I5K|B Chain B, Crystal Structure Of Ugp1p
          Length = 488

 Score = 29.3 bits (64), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 6/69 (8%)

Query: 27 NEQLTSDLRNKIQALK-SLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARVVLDI 85
          N    S +RN +  L  S  +D     K++NE     +D  F     +L    +R  L+ 
Sbjct: 9  NSVAASQMRNALNKLADSSKLDDAARAKFENE-----LDSFFTLFRRYLVEKSSRTTLEW 63

Query: 86 EKIKNPNID 94
          +KIK+PN D
Sbjct: 64 DKIKSPNPD 72


>pdb|2IIU|A Chain A, Crystal Structure Of A Putative Phou-Like Phosphate
           Regulatory Protein (Np_719307.1) From Shewanella
           Oneidensis Mr-1 At 2.28 A Resolution.
 pdb|2IIU|B Chain B, Crystal Structure Of A Putative Phou-Like Phosphate
           Regulatory Protein (Np_719307.1) From Shewanella
           Oneidensis Mr-1 At 2.28 A Resolution.
 pdb|2IIU|C Chain C, Crystal Structure Of A Putative Phou-Like Phosphate
           Regulatory Protein (Np_719307.1) From Shewanella
           Oneidensis Mr-1 At 2.28 A Resolution.
 pdb|2OLT|A Chain A, Crystal Structure Of A Phou-Like Protein (So_3770) From
           Shewanella Oneidensis Mr-1 At 2.00 A Resolution
 pdb|2OLT|B Chain B, Crystal Structure Of A Phou-Like Protein (So_3770) From
           Shewanella Oneidensis Mr-1 At 2.00 A Resolution
 pdb|2OLT|C Chain C, Crystal Structure Of A Phou-Like Protein (So_3770) From
           Shewanella Oneidensis Mr-1 At 2.00 A Resolution
          Length = 227

 Score = 27.3 bits (59), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 29/61 (47%)

Query: 21  DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMAR 80
           D I ++ + L   LR ++ AL+S    +     Y+    + G+ D  +R G  L   +AR
Sbjct: 167 DIIEEDTDDLQIQLRRQLFALESELNPVDVXFLYKTIEWVGGLADLAERVGSRLELXLAR 226

Query: 81  V 81
           V
Sbjct: 227 V 227


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.136    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,376,714
Number of Sequences: 62578
Number of extensions: 125920
Number of successful extensions: 221
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 220
Number of HSP's gapped (non-prelim): 7
length of query: 104
length of database: 14,973,337
effective HSP length: 69
effective length of query: 35
effective length of database: 10,655,455
effective search space: 372940925
effective search space used: 372940925
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)