Query psy7549
Match_columns 104
No_of_seqs 107 out of 369
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 21:13:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7549.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7549hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nps_D Syntaxin-6; vesicle fus 99.7 4.1E-18 1.4E-22 111.7 6.1 69 21-91 12-80 (82)
2 1n7s_D SNAP-25A; neuronal snar 99.7 1.3E-17 4.6E-22 105.0 6.6 64 21-85 2-65 (66)
3 1gl2_D Syntaxin 8, vesicle tra 99.7 1.3E-17 4.6E-22 104.7 5.6 63 22-86 3-65 (65)
4 1sfc_D Protein (SNAP-25B), pro 99.7 1.1E-16 3.7E-21 106.2 8.2 68 20-88 20-87 (87)
5 1l4a_D S-SNAP25 fusion protein 99.5 2E-14 6.8E-19 95.6 5.7 65 21-86 22-86 (87)
6 3b5n_D Protein transport prote 99.4 6.1E-13 2.1E-17 84.2 7.0 63 21-84 2-64 (64)
7 3hd7_B Syntaxin-1A; membrane p 97.3 0.00084 2.9E-08 45.4 6.7 64 20-85 13-76 (109)
8 1jth_B Syntaxin 1A; coiled-coi 96.8 0.0096 3.3E-07 37.6 8.0 65 23-89 5-69 (77)
9 2nps_B Syntaxin 13, vesicle-as 95.8 0.069 2.4E-06 33.1 7.8 58 28-86 5-62 (71)
10 3b5n_B Protein SSO1; snare com 95.6 0.12 4E-06 31.9 8.3 62 23-86 5-66 (69)
11 1sfc_B Protein (syntaxin 1A), 95.6 0.11 3.9E-06 33.1 8.3 67 21-89 14-80 (83)
12 1gl2_B Syntaxin 7; membrane pr 95.4 0.074 2.5E-06 32.5 6.7 60 23-84 4-63 (65)
13 1n7s_B Syntaxin 1A; neuronal s 94.9 0.16 5.6E-06 31.1 7.1 62 21-84 5-66 (68)
14 1sfc_A VAMP 2, protein (synapt 80.6 7.8 0.00027 25.2 6.8 35 30-65 31-65 (96)
15 2nps_C Vesicle transport throu 79.4 9.3 0.00032 24.0 7.0 49 38-87 28-76 (81)
16 2xhe_B Syntaxin1; exocytosis, 76.4 1.4 4.7E-05 33.1 2.3 63 22-86 211-273 (279)
17 1dn1_B Syntaxin 1A, syntaxin b 72.2 2.4 8.1E-05 31.9 2.7 58 28-86 199-256 (267)
18 1n7s_C SNAP-25A; neuronal snar 70.8 17 0.00057 22.8 7.3 44 42-86 36-79 (79)
19 3efg_A Protein SLYX homolog; x 70.5 14 0.00048 23.3 5.7 51 26-77 11-61 (78)
20 1gl2_C VTI1B, vesicle transpor 68.0 17 0.00058 21.8 6.5 54 32-86 12-65 (65)
21 1nhl_A Synaptosomal-associated 66.6 8.6 0.00029 22.4 3.8 42 40-82 11-52 (54)
22 3thf_A Protein shroom; coiled- 63.9 40 0.0014 24.8 7.8 43 21-64 11-53 (190)
23 4ew8_A Sensor protein DIVL; si 61.7 37 0.0013 23.4 8.0 50 8-57 4-56 (268)
24 1ic2_A Tropomyosin alpha chain 60.4 27 0.00094 21.6 6.8 56 30-86 21-76 (81)
25 1jcd_A Major outer membrane li 59.2 25 0.00085 20.7 5.4 27 31-57 20-46 (52)
26 1jcd_A Major outer membrane li 58.5 26 0.00088 20.7 5.3 15 29-43 11-25 (52)
27 3c98_B Syntaxin-1A; protein co 58.4 6.7 0.00023 27.8 2.7 57 28-85 211-267 (279)
28 1ezj_A Nucleocapsid phosphopro 55.9 28 0.00095 23.6 5.3 35 25-60 69-103 (115)
29 3u1c_A Tropomyosin alpha-1 cha 55.4 39 0.0013 21.8 6.8 55 30-85 24-78 (101)
30 3zrx_A AF1503 protein, osmolar 55.0 29 0.001 20.2 8.5 80 7-86 24-108 (115)
31 2dnx_A Syntaxin-12; snare, HAB 53.3 38 0.0013 22.7 5.8 66 19-86 11-76 (130)
32 3ra3_A P1C; coiled coil domain 52.3 15 0.00052 19.0 2.7 19 21-43 3-21 (28)
33 2xze_Q Charged multivesicular 46.3 19 0.00065 20.3 2.8 23 21-43 18-40 (40)
34 2kog_A Vesicle-associated memb 44.8 2.9 9.9E-05 28.4 -1.0 53 30-83 34-89 (119)
35 1l4a_A Synaptobrevin; snare, s 44.4 25 0.00084 21.8 3.4 29 21-49 18-46 (80)
36 3u59_A Tropomyosin beta chain; 42.3 65 0.0022 20.6 6.8 54 30-84 24-77 (101)
37 3onj_A T-snare VTI1; helix, HA 39.2 73 0.0025 20.3 6.3 48 22-70 5-60 (97)
38 3zcc_A HAMP, osmolarity sensor 37.4 61 0.0021 18.8 8.7 79 7-86 24-108 (114)
39 2kwh_A RAla-binding protein 1; 36.8 20 0.00068 21.7 2.0 22 46-68 6-27 (56)
40 1s0p_A CAP, adenylyl cyclase-a 36.5 70 0.0024 23.0 5.2 35 32-70 7-41 (176)
41 2pjw_V Vacuolar protein sortin 36.1 81 0.0028 20.4 5.1 46 20-70 27-73 (91)
42 4i0x_B ESAT-6-like protein MAB 34.5 83 0.0028 19.5 7.3 53 32-85 14-76 (103)
43 3na7_A HP0958; flagellar bioge 32.5 1.4E+02 0.0049 21.7 6.6 54 29-83 32-85 (256)
44 2yy0_A C-MYC-binding protein; 31.4 42 0.0014 19.6 2.8 33 4-44 9-41 (53)
45 2y6w_A BCL-2-like protein 2; a 31.0 70 0.0024 22.5 4.5 45 47-91 61-106 (177)
46 3kqg_A Langerin, C-type lectin 30.7 90 0.0031 20.7 4.8 28 30-57 17-44 (182)
47 1gd2_E Transcription factor PA 29.2 1E+02 0.0035 18.9 5.7 39 26-65 26-64 (70)
48 4aq3_A Apoptosis regulator BCL 28.6 37 0.0013 23.9 2.6 52 46-97 60-112 (169)
49 2kxh_B Peptide of FAR upstream 28.3 16 0.00053 19.7 0.4 19 33-51 9-27 (31)
50 1x9t_B N-terminl peptide of fi 28.2 24 0.00083 18.2 1.2 15 1-15 1-16 (26)
51 2xdj_A Uncharacterized protein 28.1 1.2E+02 0.004 19.2 5.8 40 51-92 22-61 (83)
52 3m48_A General control protein 27.8 76 0.0026 17.1 3.2 10 34-43 19-28 (33)
53 1kd8_B GABH BLL, GCN4 acid bas 27.4 83 0.0028 17.3 4.1 27 31-57 3-29 (36)
54 1a93_B MAX protein, coiled coi 27.0 33 0.0011 18.7 1.6 12 50-62 17-28 (34)
55 3a2a_A Voltage-gated hydrogen 26.7 1.1E+02 0.0037 18.4 5.1 31 31-62 20-50 (58)
56 2nps_A VAMP-4, vesicle-associa 26.1 1.1E+02 0.0038 18.4 7.1 56 19-76 9-64 (74)
57 3a7p_A Autophagy protein 16; c 25.5 1.8E+02 0.0062 20.6 8.0 55 30-85 69-123 (152)
58 3v86_A De novo design helix; c 25.3 76 0.0026 16.1 3.5 12 31-42 9-20 (27)
59 1oxj_A RNA-binding protein sma 25.3 51 0.0017 23.9 2.9 68 19-88 30-97 (173)
60 1uo4_A General control protein 24.7 92 0.0032 16.9 3.3 25 33-57 5-29 (34)
61 2bni_A General control protein 23.7 97 0.0033 16.8 3.3 27 31-57 3-29 (34)
62 3iyk_A VP5; icosahedral virus; 23.5 2.7E+02 0.0091 23.5 7.2 58 27-86 116-174 (526)
63 3he5_B Synzip2; heterodimeric 23.2 1.2E+02 0.004 17.5 4.8 36 33-71 7-44 (52)
64 2w3l_A BCL2-XL, apoptosis regu 22.9 43 0.0015 22.6 2.0 45 47-91 37-82 (144)
65 3oja_A Leucine-rich immune mol 22.3 2.7E+02 0.0094 21.5 8.2 35 50-85 449-483 (487)
66 3tq2_A KE1; parallel three hel 21.9 65 0.0022 17.4 2.2 16 31-46 3-18 (36)
67 2js5_A Uncharacterized protein 21.8 1.3E+02 0.0043 18.8 3.9 24 31-54 5-28 (71)
68 2qyw_A Vesicle transport throu 21.4 1.7E+02 0.0057 18.7 8.5 57 21-78 18-83 (102)
69 2nl9_A Fusion protein consisti 21.4 67 0.0023 21.9 2.8 51 47-97 45-97 (157)
70 2l3n_A DNA-binding protein RAP 21.3 1.4E+02 0.0048 19.4 4.1 38 44-82 14-51 (104)
71 2ad6_B Methanol dehydrogenase 21.3 24 0.00082 22.0 0.4 7 6-12 24-30 (69)
72 1r2d_A Apoptosis regulator BCL 20.3 58 0.002 24.2 2.4 54 39-92 84-138 (218)
No 1
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=99.73 E-value=4.1e-18 Score=111.75 Aligned_cols=69 Identities=17% Similarity=0.251 Sum_probs=60.0
Q ss_pred chHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHhhhhHHHHhhccchHHHHHHHHHHHHhcCCc
Q psy7549 21 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARVVLDIEKIKNP 91 (104)
Q Consensus 21 ~~lE~qND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLD~l~~~fd~t~~~L~~t~~Rl~~m~~~~~n~ 91 (104)
++|++| |+.|+.|+.+|.+||++|++||+||++||. +||+|+++||++..+|+++++|+.+++++++++
T Consensus 12 ~~~~eQ-D~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~-lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~~~ 80 (82)
T 2nps_D 12 NMGRMQ-DEQLELVSGSIGVLKNMSQRIGGELEEQAV-MLEDFSHELESTQSRLDNVMKKLAKVSHMTSDR 80 (82)
T ss_dssp -------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcC
Confidence 566666 558999999999999999999999999999 999999999999999999999999999887754
No 2
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=99.71 E-value=1.3e-17 Score=105.04 Aligned_cols=64 Identities=17% Similarity=0.278 Sum_probs=61.4
Q ss_pred chHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHhhhhHHHHhhccchHHHHHHHHHHH
Q psy7549 21 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARVVLDI 85 (104)
Q Consensus 21 ~~lE~qND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLD~l~~~fd~t~~~L~~t~~Rl~~m~ 85 (104)
+.+|+|+|+.++.|+.+|++||++|++||+||+.||. +||.++++||++..+|+.+++|+.++.
T Consensus 2 d~~e~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~-~Ld~l~~~~d~~~~~l~~~~~rl~~ll 65 (66)
T 1n7s_D 2 SARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNR-QIDRIMEKADSNKTRIDEANQRATKML 65 (66)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHc
Confidence 4689999999999999999999999999999999999 999999999999999999999999864
No 3
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.70 E-value=1.3e-17 Score=104.75 Aligned_cols=63 Identities=22% Similarity=0.295 Sum_probs=53.0
Q ss_pred hHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHhhhhHHHHhhccchHHHHHHHHHHHH
Q psy7549 22 AIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARVVLDIE 86 (104)
Q Consensus 22 ~lE~qND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLD~l~~~fd~t~~~L~~t~~Rl~~m~~ 86 (104)
+|++| |+.++.|+.+|++||++|++||+||+.||. +||+|+++||++..+|+++++|+.++.+
T Consensus 3 ~~~eq-D~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~-lLd~l~~~~d~~~~~l~~~~~rl~~l~k 65 (65)
T 1gl2_D 3 HMQEQ-DAGLDALSSIISRQKQMGQEIGNELDEQNE-IIDDLANLVENTDEKLRTEARRVTLVDR 65 (65)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45555 778999999999999999999999999999 9999999999999999999999998754
No 4
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.68 E-value=1.1e-16 Score=106.18 Aligned_cols=68 Identities=18% Similarity=0.259 Sum_probs=63.9
Q ss_pred cchHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHhhhhHHHHhhccchHHHHHHHHHHHHhc
Q psy7549 20 GDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARVVLDIEKI 88 (104)
Q Consensus 20 ~~~lE~qND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLD~l~~~fd~t~~~L~~t~~Rl~~m~~~~ 88 (104)
.+.+|+|+|+.|+.|+..|++||+++++||+||+.||. +||.|+++||++..+|..+++|+.++.++|
T Consensus 20 ~d~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~-~Ld~i~~~~D~~~~rl~~~~~rl~~ll~kg 87 (87)
T 1sfc_D 20 NDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNR-QIDRIMEKADSNKTRIDEANQRATKMLGSG 87 (87)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHhhCC
Confidence 47889999999999999999999999999999999999 999999999999999999999999998764
No 5
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.51 E-value=2e-14 Score=95.57 Aligned_cols=65 Identities=17% Similarity=0.307 Sum_probs=61.8
Q ss_pred chHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHhhhhHHHHhhccchHHHHHHHHHHHH
Q psy7549 21 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARVVLDIE 86 (104)
Q Consensus 21 ~~lE~qND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLD~l~~~fd~t~~~L~~t~~Rl~~m~~ 86 (104)
+.+|.|.|+.|+.|+..|++||+++.+||+||+.||. +||.+++.+|++..+|..+.+|+.++.+
T Consensus 22 d~~e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~-~LD~i~~~~D~~~~rl~~~n~r~~kll~ 86 (87)
T 1l4a_D 22 DAREDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNR-QVDRIQQKAESNESRIDEANKKATKLLK 86 (87)
T ss_dssp SHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTHHHHTHHHHHHHHCC-
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6788888999999999999999999999999999999 9999999999999999999999998765
No 6
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=99.41 E-value=6.1e-13 Score=84.16 Aligned_cols=63 Identities=16% Similarity=0.210 Sum_probs=60.1
Q ss_pred chHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHhhhhHHHHhhccchHHHHHHHHHH
Q psy7549 21 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARVVLD 84 (104)
Q Consensus 21 ~~lE~qND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLD~l~~~fd~t~~~L~~t~~Rl~~m 84 (104)
+.+|.|.|+-|++|+..|++||+++.+||+||+.||. +||.+.+..|++..+|..+.+||.++
T Consensus 2 d~~E~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~-~ldrI~~k~d~~d~ri~~~~~Rl~~i 64 (64)
T 3b5n_D 2 SEMELEIDRNLDQIQQVSNRLKKMALTTGKELDSQQK-RLNNIEESTDDLDINLHMNTNRLAGI 64 (64)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 5689999999999999999999999999999999999 99999999999999999999999863
No 7
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=97.28 E-value=0.00084 Score=45.38 Aligned_cols=64 Identities=14% Similarity=0.277 Sum_probs=58.0
Q ss_pred cchHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHhhhhHHHHhhccchHHHHHHHHHHH
Q psy7549 20 GDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARVVLDI 85 (104)
Q Consensus 20 ~~~lE~qND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLD~l~~~fd~t~~~L~~t~~Rl~~m~ 85 (104)
...+++. ++.+..|...+.-|.++..++...|.+|.. ++|.++..++.+...+..+...+.+..
T Consensus 13 l~~i~eR-~~eI~~Ie~~I~eL~~iF~dla~lV~eQge-~Id~Ie~nv~~a~~~v~~g~~eL~kA~ 76 (109)
T 3hd7_B 13 LSEIETR-HSEIIKLENSIRELHDMFMDMAMLVESQGE-MIDRIEYNVEHAVDYVERAVSDTKKAV 76 (109)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666 447899999999999999999999999999 999999999999999999999998864
No 8
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=96.80 E-value=0.0096 Score=37.60 Aligned_cols=65 Identities=14% Similarity=0.279 Sum_probs=57.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHhhhhHHHHhhccchHHHHHHHHHHHHhcC
Q psy7549 23 IHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARVVLDIEKIK 89 (104)
Q Consensus 23 lE~qND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLD~l~~~fd~t~~~L~~t~~Rl~~m~~~~~ 89 (104)
+++. .+.+..|...|.-|.+|..++..-|.+|.. +||.++..++.+...+..+...|.+..+..+
T Consensus 5 i~eR-~~ei~~ie~~i~eL~~iF~dla~lV~eQge-~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~ 69 (77)
T 1jth_B 5 IETR-HSEIIKLENSIRELHDMFMDMAMLVESQGE-MIDRIEYNVEHAVDYVERAVSDTKKAVKYQS 69 (77)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 447899999999999999999999999999 9999999999999999999999999776433
No 9
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=95.81 E-value=0.069 Score=33.11 Aligned_cols=58 Identities=10% Similarity=0.204 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHhhhhHHHHhhccchHHHHHHHHHHHH
Q psy7549 28 EQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARVVLDIE 86 (104)
Q Consensus 28 D~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLD~l~~~fd~t~~~L~~t~~Rl~~m~~ 86 (104)
.+.+..|...|.-|.+|..++..=|.+|.. +||.++..++.+...+..+...|.+..+
T Consensus 5 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge-~id~Ie~nv~~a~~~v~~g~~eL~kA~~ 62 (71)
T 2nps_B 5 ETAIQQLEADILDVNQIFKDLAMMIHDQGD-LIDSIEANVESSEVHVERASDQLQRAAY 62 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999999999999 9999999999999999999999988664
No 10
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=95.64 E-value=0.12 Score=31.91 Aligned_cols=62 Identities=15% Similarity=0.140 Sum_probs=55.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHhhhhHHHHhhccchHHHHHHHHHHHH
Q psy7549 23 IHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARVVLDIE 86 (104)
Q Consensus 23 lE~qND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLD~l~~~fd~t~~~L~~t~~Rl~~m~~ 86 (104)
+++. .+.+..|...|.-|.+|..++..=|.+|.. +||.++..++.+...+..+...|.+..+
T Consensus 5 i~eR-~~ei~~ie~~i~eL~~iF~dla~lV~eQge-~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 66 (69)
T 3b5n_B 5 VQAR-HQELLKLEKSMAELTQLFNDMEELVIEQQE-NVDVIDKNVEDAQLDVEQGVGHTDKAVK 66 (69)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 446899999999999999999999999999 9999999999999999999999988665
No 11
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=95.57 E-value=0.11 Score=33.08 Aligned_cols=67 Identities=13% Similarity=0.273 Sum_probs=59.2
Q ss_pred chHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHhhhhHHHHhhccchHHHHHHHHHHHHhcC
Q psy7549 21 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARVVLDIEKIK 89 (104)
Q Consensus 21 ~~lE~qND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLD~l~~~fd~t~~~L~~t~~Rl~~m~~~~~ 89 (104)
..+++. .+.+..|...|.-|.+|..++..=|.+|.. +||.++..++.+...+..+...|.+..+..+
T Consensus 14 ~~i~eR-~~ei~~ie~~i~eL~~iF~dla~lV~eQge-~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk 80 (83)
T 1sfc_B 14 SEIETR-HSEIIKLENSIRELHDMFMDMAMLVESQGE-MIDRIEYNVEHAVDYVERAVSDTKKAVKYQS 80 (83)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 455555 447899999999999999999999999999 9999999999999999999999998776443
No 12
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=95.39 E-value=0.074 Score=32.53 Aligned_cols=60 Identities=12% Similarity=0.295 Sum_probs=52.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHhhhhHHHHhhccchHHHHHHHHHH
Q psy7549 23 IHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARVVLD 84 (104)
Q Consensus 23 lE~qND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLD~l~~~fd~t~~~L~~t~~Rl~~m 84 (104)
+++. .+.+..|...|.-|.+|..++..=|.+|.. +||.++..++.+...+..+...|.+.
T Consensus 4 i~eR-~~~i~~ie~~i~eL~~iF~dla~lV~eQge-~id~Ie~nv~~a~~~v~~g~~eL~kA 63 (65)
T 1gl2_B 4 MHER-ESSIRQLEADIMDINEIFKDLGMMIHEQGD-VIDSIEANVESAEVHVQQANQQLSRA 63 (65)
T ss_dssp -CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 346799999999999999999999999999 99999999999999999998887663
No 13
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=94.86 E-value=0.16 Score=31.12 Aligned_cols=62 Identities=15% Similarity=0.292 Sum_probs=54.8
Q ss_pred chHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHhhhhHHHHhhccchHHHHHHHHHH
Q psy7549 21 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARVVLD 84 (104)
Q Consensus 21 ~~lE~qND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLD~l~~~fd~t~~~L~~t~~Rl~~m 84 (104)
..+++. .+.+..|...|.-|.+|..++..=|.+|.. +||.++..++.+...+..+...|.+.
T Consensus 5 ~~i~eR-~~ei~~Ie~~i~eL~~iF~dla~lV~eQge-~id~Ie~nv~~a~~~v~~g~~~L~kA 66 (68)
T 1n7s_B 5 SEIETR-HSEIIKLENSIRELHDMFMDMAMLVESQGE-MIDRIEYNVEHAVDYVERAVSDTKKA 66 (68)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555 447899999999999999999999999999 99999999999999999998888764
No 14
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=80.62 E-value=7.8 Score=25.22 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHhhhhH
Q psy7549 30 LTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDD 65 (104)
Q Consensus 30 ~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLD~l~~ 65 (104)
.+..+...|.-.|.|-..=-+.|-+-.+ =||.|.+
T Consensus 31 ~l~~vq~eldeVk~IM~~NI~kvLeRGE-kLd~L~d 65 (96)
T 1sfc_A 31 RLQQTQAQVDEVVDIMRVNVDKVLERDQ-KLSELDD 65 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHH
Confidence 5566777777776655544444444444 3555544
No 15
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=79.45 E-value=9.3 Score=24.04 Aligned_cols=49 Identities=8% Similarity=0.081 Sum_probs=42.9
Q ss_pred HHHHHhhHHHHHHHHHHhhHHHHhhhhHHHHhhccchHHHHHHHHHHHHh
Q psy7549 38 IQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARVVLDIEK 87 (104)
Q Consensus 38 V~~LK~lsi~Ig~Ev~~Qn~~lLD~l~~~fd~t~~~L~~t~~Rl~~m~~~ 87 (104)
+.-=..||..|-.|+..|-+ -|....+.++.+..-|+.+.+-|..|++.
T Consensus 28 ~~ETE~iG~~il~~L~~QRE-~l~~~~~~l~~~d~~l~~s~k~l~~M~rr 76 (81)
T 2nps_C 28 AVETEQIGQEMLENLSHDRE-RIQRARERLRETDANLGKSSRILTGMLRR 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Confidence 33345689999999999999 99999999999999999999999999874
No 16
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=76.39 E-value=1.4 Score=33.13 Aligned_cols=63 Identities=16% Similarity=0.287 Sum_probs=46.0
Q ss_pred hHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHhhhhHHHHhhccchHHHHHHHHHHHH
Q psy7549 22 AIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARVVLDIE 86 (104)
Q Consensus 22 ~lE~qND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLD~l~~~fd~t~~~L~~t~~Rl~~m~~ 86 (104)
.+++. .+.|..|...|.-|.+|..++..=|.+|.. +||.++..++.+...+..+...|.+..+
T Consensus 211 ~i~eR-~~eI~~Ie~~i~el~~if~dla~lV~~Qg~-~id~Ie~nv~~~~~~v~~~~~~l~kA~~ 273 (279)
T 2xhe_B 211 EIRDR-HKDIQQLERSLLELHEMFTDMSTLVASQGE-MIDRIEFSVEQSHNYVKKATEQVVQARH 273 (279)
T ss_dssp TTTHH-HHHHHHHHHHHHHHHHHHHHHHTTTTTSCS-STTCHHHHHHTCCCCC------------
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 447889999999999999999999999999 9999999999999999999998887664
No 17
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=72.18 E-value=2.4 Score=31.91 Aligned_cols=58 Identities=14% Similarity=0.307 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHhhhhHHHHhhccchHHHHHHHHHHHH
Q psy7549 28 EQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARVVLDIE 86 (104)
Q Consensus 28 D~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLD~l~~~fd~t~~~L~~t~~Rl~~m~~ 86 (104)
...+..|...|.-|.+|..++..=|.+|.. +||.++..++.+...+..+...|.+..+
T Consensus 199 ~~~i~~ie~~i~el~~if~dla~lV~~Qg~-~id~Ie~nv~~a~~~v~~~~~~l~kA~~ 256 (267)
T 1dn1_B 199 HSEIIKLENSIRELHDMFMDMAMLVESQGE-MIDRIEYNVEHAVDYVERAVSDTKKAVK 256 (267)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHCS-GGGCHHHHHHTCCCCCCCCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999999999999 9999999999999999988888877553
No 18
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=70.80 E-value=17 Score=22.80 Aligned_cols=44 Identities=11% Similarity=0.030 Sum_probs=38.6
Q ss_pred HhhHHHHHHHHHHhhHHHHhhhhHHHHhhccchHHHHHHHHHHHH
Q psy7549 42 KSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARVVLDIE 86 (104)
Q Consensus 42 K~lsi~Ig~Ev~~Qn~~lLD~l~~~fd~t~~~L~~t~~Rl~~m~~ 86 (104)
+.+++.+-.++..|.+ -|+.....++.+..-|+.+-+.|..|.+
T Consensus 36 e~~G~~Tl~~L~~Q~E-ql~r~~~~ld~i~~~l~~a~k~L~~m~k 79 (79)
T 1n7s_C 36 KDAGIRTLVMLDEQGE-QLDRVEEGMNHINQDMKEAEKNLKDLGK 79 (79)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhh-hHHHHHhHHHHHHhHHHHHHHHHhhhcC
Confidence 4588888899999999 9999999999999999999988887753
No 19
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=70.48 E-value=14 Score=23.27 Aligned_cols=51 Identities=8% Similarity=-0.048 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHhhhhHHHHhhccchHHH
Q psy7549 26 ENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNS 77 (104)
Q Consensus 26 qND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLD~l~~~fd~t~~~L~~t 77 (104)
+-+..++.|..++.-+-..=..+.+.|-.|.. .||.|...+.....+|+..
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~-~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARL-TGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 34557899999999999999999999999999 9999988887777777653
No 20
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=68.00 E-value=17 Score=21.81 Aligned_cols=54 Identities=13% Similarity=0.019 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhHHHHhhhhHHHHhhccchHHHHHHHHHHHH
Q psy7549 32 SDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARVVLDIE 86 (104)
Q Consensus 32 d~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLD~l~~~fd~t~~~L~~t~~Rl~~m~~ 86 (104)
..-...+.--.+++..|-.++..|-+ -|....+.++.+..-|+.+.+-|+.|++
T Consensus 12 ~~s~ri~~ETE~iG~~~l~~L~~QRE-ql~~t~~~l~~~d~~l~~s~k~L~~m~R 65 (65)
T 1gl2_C 12 ERSHRIATETDQIGTEIIEELGEQRD-QLERTKSRLVNTNENLSKSRKILRSMSR 65 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-HHhHHHhHHHhHHhHHHHHHHHHHhhcC
Confidence 33344444556799999999999999 9999999999999999998888877753
No 21
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=66.58 E-value=8.6 Score=22.39 Aligned_cols=42 Identities=14% Similarity=0.169 Sum_probs=33.8
Q ss_pred HHHhhHHHHHHHHHHhhHHHHhhhhHHHHhhccchHHHHHHHH
Q psy7549 40 ALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARVV 82 (104)
Q Consensus 40 ~LK~lsi~Ig~Ev~~Qn~~lLD~l~~~fd~t~~~L~~t~~Rl~ 82 (104)
--+.+++.+-.++..|-+ -|+.....++....-|+.+-+-|.
T Consensus 11 ese~~g~~Tl~~L~~QgE-ql~r~~~~ld~i~~~l~~a~k~L~ 52 (54)
T 1nhl_A 11 ESQDAGIKTITMLDEQKE-QLNRIEEGLDQINKDMRETEKTLT 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHh-hHHHHHhHHHHHHhHHHHHHHHHh
Confidence 345688888899999998 888888888888888887776654
No 22
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=63.95 E-value=40 Score=24.84 Aligned_cols=43 Identities=26% Similarity=0.298 Sum_probs=34.7
Q ss_pred chHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHhhhh
Q psy7549 21 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMD 64 (104)
Q Consensus 21 ~~lE~qND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLD~l~ 64 (104)
..+.+--+++++.|+.|+..|+.-=..|.+|++.-+. +=+.+.
T Consensus 11 ~~i~~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~~N~~-lG~~ve 53 (190)
T 3thf_A 11 NLIKQKMDELIKHLNQKIVSLKREQQTISEECSANDR-LGQDLF 53 (190)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHH
Confidence 3467777889999999999999999999999888777 544443
No 23
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=61.67 E-value=37 Score=23.44 Aligned_cols=50 Identities=4% Similarity=-0.061 Sum_probs=25.5
Q ss_pred CCCCCCCCCCCC---cchHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhH
Q psy7549 8 NYYEPVPNQFDG---GDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNE 57 (104)
Q Consensus 8 ~~~~~~p~~~~~---~~~lE~qND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~ 57 (104)
+||+|.|-.... ...|+++-.+....|....+..+.+...|..|++.--.
T Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~l~Helr~pL~ 56 (268)
T 4ew8_A 4 SHHHHHHSSGLVPRGSHMLQSALADRSAALAEAERLKRDFVGNVSYELRTPLT 56 (268)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccCccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 456654442211 27777777777788888888888888888888876554
No 24
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=60.38 E-value=27 Score=21.58 Aligned_cols=56 Identities=14% Similarity=0.232 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHhhhhHHHHhhccchHHHHHHHHHHHH
Q psy7549 30 LTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARVVLDIE 86 (104)
Q Consensus 30 ~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLD~l~~~fd~t~~~L~~t~~Rl~~m~~ 86 (104)
.++.+..++.....-......||..-+. =+-.+.+++|++...|..+..+|...-+
T Consensus 21 ~~~~~e~~l~~~e~~~~~~E~ev~~L~k-Kiq~lE~eld~~ee~l~~a~~kLeeaek 76 (81)
T 1ic2_A 21 RAEQAEADKKAAEERSKQLEDELVALQK-KLKGTEDELDKYSESLKDAQEKLELADK 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666667778889999999888 8999999999999999999998876544
No 25
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=59.25 E-value=25 Score=20.73 Aligned_cols=27 Identities=15% Similarity=0.117 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhH
Q psy7549 31 TSDLRNKIQALKSLTIDIGTEVKYQNE 57 (104)
Q Consensus 31 ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~ 57 (104)
++.|++.|..||.=.....+|+..=|.
T Consensus 20 VdqLssdV~al~~~v~~ak~eA~RAN~ 46 (52)
T 1jcd_A 20 ADQASNDANAARSDAQAAKDDAARANQ 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444433344444444444
No 26
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=58.54 E-value=26 Score=20.66 Aligned_cols=15 Identities=7% Similarity=-0.026 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHh
Q psy7549 29 QLTSDLRNKIQALKS 43 (104)
Q Consensus 29 ~~ld~L~~kV~~LK~ 43 (104)
..++.|+.+|..|+.
T Consensus 11 s~V~~L~~kVdqLss 25 (52)
T 1jcd_A 11 SDAQTANAKADQASN 25 (52)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345666666666665
No 27
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=58.39 E-value=6.7 Score=27.83 Aligned_cols=57 Identities=14% Similarity=0.305 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHhhhhHHHHhhccchHHHHHHHHHHH
Q psy7549 28 EQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARVVLDI 85 (104)
Q Consensus 28 D~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLD~l~~~fd~t~~~L~~t~~Rl~~m~ 85 (104)
...+..+...|..+..+..+|..-|.+|.. .++.+...++.+...+..+...+.+..
T Consensus 211 ~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~-~~~~I~~nv~~~~~~v~~~~~el~~A~ 267 (279)
T 3c98_B 211 HSEIIKLENSIRELHDMFMDMAMLVESQGE-MIDRIEYNVEHAVDYVERAVSDTKKAV 267 (279)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHCS-GGGCHHHHHHTCCCCCCCCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788999999999999999999999999 999999999998887777666665543
No 28
>1ezj_A Nucleocapsid phosphoprotein; four stranded coiled coil, viral polymerase, T viral protein, transferase; 1.90A {Sendai virus} SCOP: h.1.14.1
Probab=55.90 E-value=28 Score=23.60 Aligned_cols=35 Identities=26% Similarity=0.412 Sum_probs=26.8
Q ss_pred HhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHH
Q psy7549 25 QENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLL 60 (104)
Q Consensus 25 ~qND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lL 60 (104)
+||+..+.++.+.|..+|.+-...-+--++||. |+
T Consensus 69 ~en~~~L~QIQ~ei~s~rd~hkR~~E~QkEQ~S-L~ 103 (115)
T 1ezj_A 69 DENKQLLKQIQESVESFRDIYKRFSEYQKEQNS-LL 103 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HH
Confidence 567778888888888888777777777777877 54
No 29
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=55.43 E-value=39 Score=21.83 Aligned_cols=55 Identities=13% Similarity=0.106 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHhhhhHHHHhhccchHHHHHHHHHHH
Q psy7549 30 LTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARVVLDI 85 (104)
Q Consensus 30 ~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLD~l~~~fd~t~~~L~~t~~Rl~~m~ 85 (104)
..+.+..++..+..-......||.+-+. =+-.+.+++|.+...|..+..++.---
T Consensus 24 rae~~e~~~k~~e~~~~~~E~Ei~sL~k-k~~~lE~eld~~ee~L~ea~~kLee~e 78 (101)
T 3u1c_A 24 RAEQAEADKKAAEERSKQLEDDIVQLEK-QLRVTEDSRDQVLEELHKSEDSLLFAE 78 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777888888888999999999877 788999999999999998887776543
No 30
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=54.99 E-value=29 Score=20.21 Aligned_cols=80 Identities=16% Similarity=0.169 Sum_probs=38.9
Q ss_pred CCCCCCCCCC-CCCc-chHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHH---HHhhhhHHHHhhccchHHHHHHH
Q psy7549 7 GNYYEPVPNQ-FDGG-DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEH---LLRGMDDDFDRTGGFLNNSMARV 81 (104)
Q Consensus 7 ~~~~~~~p~~-~~~~-~~lE~qND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~---lLD~l~~~fd~t~~~L~~t~~Rl 81 (104)
|+.-.++|.. ..++ ..|...-+..++.|...+...+++...+-.|++.--.. .++.+..........+..+..++
T Consensus 24 gdl~~~~~~~~~~dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~ 103 (115)
T 3zrx_A 24 GNLEAEVPHQNRADEIGILAKSIERLRRSLKQLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEEC 103 (115)
T ss_dssp TCTTCCCTTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHH
T ss_pred CCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4433344444 3222 34444455577777777777555555555555543330 33333333333334444555555
Q ss_pred HHHHH
Q psy7549 82 VLDIE 86 (104)
Q Consensus 82 ~~m~~ 86 (104)
..++.
T Consensus 104 ~~~~~ 108 (115)
T 3zrx_A 104 NAIIE 108 (115)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 31
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.34 E-value=38 Score=22.69 Aligned_cols=66 Identities=12% Similarity=0.063 Sum_probs=51.2
Q ss_pred CcchHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHhhhhHHHHhhccchHHHHHHHHHHHH
Q psy7549 19 GGDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARVVLDIE 86 (104)
Q Consensus 19 ~~~~lE~qND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLD~l~~~fd~t~~~L~~t~~Rl~~m~~ 86 (104)
..+.|-+.-...|-.+...|+.|+.+-..||.- ++--. |=+.+..-...+...++.+...|+++..
T Consensus 11 ef~~l~~~is~~I~~In~~vs~l~r~v~~LGT~-kDt~~-LR~kl~~~~~~t~~l~k~ts~~lk~L~~ 76 (130)
T 2dnx_A 11 DFSSIIQTCSGNIQRISQATAQIKNLMSQLGTK-QDSSK-LQENLQQLQHSTNQLAKETNELLKELGS 76 (130)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS-SCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346666776777888888899999998888873 34444 6778888888888888888888888776
No 32
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=52.35 E-value=15 Score=18.98 Aligned_cols=19 Identities=53% Similarity=0.691 Sum_probs=12.2
Q ss_pred chHHHhhHHHHHHHHHHHHHHHh
Q psy7549 21 DAIHQENEQLTSDLRNKIQALKS 43 (104)
Q Consensus 21 ~~lE~qND~~ld~L~~kV~~LK~ 43 (104)
+.||=||| +|..||..||+
T Consensus 3 dalefend----aleqkiaalkq 21 (28)
T 3ra3_A 3 DALEFEND----ALEQKIAALKQ 21 (28)
T ss_dssp CHHHHHHH----HHHHHHHHHHH
T ss_pred chHHhccH----HHHHHHHHHHH
Confidence 45677776 55666666665
No 33
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=46.31 E-value=19 Score=20.32 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=16.8
Q ss_pred chHHHhhHHHHHHHHHHHHHHHh
Q psy7549 21 DAIHQENEQLTSDLRNKIQALKS 43 (104)
Q Consensus 21 ~~lE~qND~~ld~L~~kV~~LK~ 43 (104)
...++++++.+++|.++..+|++
T Consensus 18 ~~e~edeEedi~~MqsRLaALRS 40 (40)
T 2xze_Q 18 SEDEEEEEEALEAMQSRLATLRS 40 (40)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTC
T ss_pred chhhhhhHHHHHHHHHHHHHhcC
Confidence 33456666688999999988874
No 34
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=44.82 E-value=2.9 Score=28.39 Aligned_cols=53 Identities=11% Similarity=0.127 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHhhhhH---HHHhhccchHHHHHHHHH
Q psy7549 30 LTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDD---DFDRTGGFLNNSMARVVL 83 (104)
Q Consensus 30 ~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLD~l~~---~fd~t~~~L~~t~~Rl~~ 83 (104)
.+..+...|.-.|.+-.+=-+.|-+-.+ -||.|.+ ++.........+.+++.+
T Consensus 34 ~l~~vq~evdeVk~IM~~NIdkvLeRGE-kLd~L~~KTe~L~~~S~~F~k~A~kl~r 89 (119)
T 2kog_A 34 RLQQTQAQVDEVVDIMRVNVDKVLERDQ-KLSELDDRADALQAGASQFETSAAKLKR 89 (119)
T ss_dssp HHHHSSHHHHHHHHHHHHHHHHHHCCCC-SSCCCCSCCSCCCSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666654443334443333 3555543 222233344444445544
No 35
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=44.40 E-value=25 Score=21.85 Aligned_cols=29 Identities=10% Similarity=0.173 Sum_probs=13.2
Q ss_pred chHHHhhHHHHHHHHHHHHHHHhhHHHHH
Q psy7549 21 DAIHQENEQLTSDLRNKIQALKSLTIDIG 49 (104)
Q Consensus 21 ~~lE~qND~~ld~L~~kV~~LK~lsi~Ig 49 (104)
..+..|-++-.+-+...|..+=+-+..|.
T Consensus 18 ~~vq~el~ev~~iM~~NI~~vLeRGekLd 46 (80)
T 1l4a_A 18 QQTQAQVEEVVDIMRVNVDKVLERDSKIS 46 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 44444444444444444444444444443
No 36
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=42.34 E-value=65 Score=20.58 Aligned_cols=54 Identities=7% Similarity=0.137 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHhhhhHHHHhhccchHHHHHHHHHH
Q psy7549 30 LTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARVVLD 84 (104)
Q Consensus 30 ~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLD~l~~~fd~t~~~L~~t~~Rl~~m 84 (104)
..+.+..++..+..-.....+||..-+. =+-.+.+++|.+...|..+...+..-
T Consensus 24 ~ae~~e~~~k~~e~~~~~~E~ei~sL~k-Kiq~lE~eld~~~e~l~~a~~kLe~~ 77 (101)
T 3u59_A 24 RAEQAEADKKQAEDRCKQLEEEQQGLQK-KLKGTEDEVEKYSESVKEAQEKLEQA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777777777888888899888887 78889999998888888877766543
No 37
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=39.18 E-value=73 Score=20.26 Aligned_cols=48 Identities=10% Similarity=0.127 Sum_probs=37.2
Q ss_pred hHHHhhHHHHHHHHHHHHHHHhh--------HHHHHHHHHHhhHHHHhhhhHHHHhh
Q psy7549 22 AIHQENEQLTSDLRNKIQALKSL--------TIDIGTEVKYQNEHLLRGMDDDFDRT 70 (104)
Q Consensus 22 ~lE~qND~~ld~L~~kV~~LK~l--------si~Ig~Ev~~Qn~~lLD~l~~~fd~t 70 (104)
..|++-......|..++..+..+ -..|...+++=.. +|+.|+-..-++
T Consensus 5 ~YE~df~~~~~~i~~~l~~~~~~~ge~Rk~~i~~ie~~ldEA~e-ll~qMelE~~~~ 60 (97)
T 3onj_A 5 SYESDFKTTLEQAKASLAEAPSQPLSQRNTTLKHVEQQQDELFD-LLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhC
Confidence 35677777888888888887644 3677888888888 899988888777
No 38
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=37.40 E-value=61 Score=18.82 Aligned_cols=79 Identities=16% Similarity=0.164 Sum_probs=44.0
Q ss_pred CCCCCCCCCCC-CCc-chHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHhhhh----HHHHhhccchHHHHHH
Q psy7549 7 GNYYEPVPNQF-DGG-DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMD----DDFDRTGGFLNNSMAR 80 (104)
Q Consensus 7 ~~~~~~~p~~~-~~~-~~lE~qND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLD~l~----~~fd~t~~~L~~t~~R 80 (104)
|+.-.++|... ++. ..|...-+...+.|...+...+++...+..|++.--. -+.... +..+.....+..+..+
T Consensus 24 g~~~~~~~~~~~~dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~tpl~-~i~~~~e~l~~~~~~~~~~i~~~~~~ 102 (114)
T 3zcc_A 24 GNLEAEVPHQNRADEIGILAKSIERLRRSLKQLADDGTLLMAGVSHDLRTPLT-RIRLATEMMSEQDGYLAESINKDIEE 102 (114)
T ss_dssp TCTTCCCTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTSCGGGHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcChHH-HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44333444433 222 4555556667888888888888888888888775444 333222 2222222445555555
Q ss_pred HHHHHH
Q psy7549 81 VVLDIE 86 (104)
Q Consensus 81 l~~m~~ 86 (104)
+..++.
T Consensus 103 l~~~i~ 108 (114)
T 3zcc_A 103 CNAIIE 108 (114)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 39
>2kwh_A RAla-binding protein 1; GTPase activation, transport protein; NMR {Homo sapiens} PDB: 2kwi_B*
Probab=36.82 E-value=20 Score=21.67 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhHHHHhhhhHHHH
Q psy7549 46 IDIGTEVKYQNEHLLRGMDDDFD 68 (104)
Q Consensus 46 i~Ig~Ev~~Qn~~lLD~l~~~fd 68 (104)
-.|..|++.|-. +|+.|+..+.
T Consensus 6 e~I~~El~kQe~-lL~~LH~e~~ 27 (56)
T 2kwh_A 6 AGIKEEIRRQEF-LLNSLHRDLQ 27 (56)
T ss_dssp HHHHHHHHHHHH-HHHHHHHTTC
T ss_pred HHHHHHHHHHHH-HHHHHHHHHH
Confidence 368899999999 9999998875
No 40
>1s0p_A CAP, adenylyl cyclase-associated protein; alpha helix bundle, membrane protein; 1.40A {Dictyostelium discoideum} SCOP: a.192.1.1 PDB: 1tjf_A
Probab=36.50 E-value=70 Score=22.95 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhHHHHhhhhHHHHhh
Q psy7549 32 SDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRT 70 (104)
Q Consensus 32 d~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLD~l~~~fd~t 70 (104)
+-+.+.|..+-.++..||.+|.+|-. ++ ...|+..
T Consensus 7 ~~i~~~l~~~~~~s~~iGg~v~~~a~-~v---~~aF~~q 41 (176)
T 1s0p_A 7 NLVDQHITPFVALSKKLAPEVGNQVE-QL---VKAIDAE 41 (176)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHH-HH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHH-HH---HHHHHHH
Confidence 45788999999999999999999999 53 3455433
No 41
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=36.13 E-value=81 Score=20.37 Aligned_cols=46 Identities=15% Similarity=0.300 Sum_probs=35.5
Q ss_pred cchHHHhhHHHHHHHHHHHHHHH-hhHHHHHHHHHHhhHHHHhhhhHHHHhh
Q psy7549 20 GDAIHQENEQLTSDLRNKIQALK-SLTIDIGTEVKYQNEHLLRGMDDDFDRT 70 (104)
Q Consensus 20 ~~~lE~qND~~ld~L~~kV~~LK-~lsi~Ig~Ev~~Qn~~lLD~l~~~fd~t 70 (104)
..+++. ..+.+|..+|..+| .|...|++.++.++. ++| |++-|..+
T Consensus 27 ~~i~~d---~~LqeLy~kv~~lRPKL~r~l~~~~~K~~~-L~~-mn~Kls~a 73 (91)
T 2pjw_V 27 NEILED---SKLQNLAQRVFASKARLNYALNDKAQKYNT-LIE-MNGKISEI 73 (91)
T ss_dssp STTTTT---THHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHH
T ss_pred ccccCC---HHHHHHHHHHHhHhHHHHHHHHHHHHHHHH-HHH-HHHHHHHH
Confidence 345533 37889999999998 599999999999999 554 77766554
No 42
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=34.51 E-value=83 Score=19.52 Aligned_cols=53 Identities=2% Similarity=0.041 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhHHHHhhhhHH----------HHhhccchHHHHHHHHHHH
Q psy7549 32 SDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDD----------FDRTGGFLNNSMARVVLDI 85 (104)
Q Consensus 32 d~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLD~l~~~----------fd~t~~~L~~t~~Rl~~m~ 85 (104)
+.|...+..+...+..|.+++..=.. .++.|... |.......+.+..+|....
T Consensus 14 ~~l~~~a~~~~~~~~~i~~~l~~L~~-~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L 76 (103)
T 4i0x_B 14 DHIEQVTSRARGFKEFVTENLDQLES-RAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGL 76 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666777777777777766666 66666555 5555555555555555443
No 43
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=32.47 E-value=1.4e+02 Score=21.66 Aligned_cols=54 Identities=7% Similarity=0.013 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHhhhhHHHHhhccchHHHHHHHHH
Q psy7549 29 QLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARVVL 83 (104)
Q Consensus 29 ~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLD~l~~~fd~t~~~L~~t~~Rl~~ 83 (104)
..++.|...+..++.--..+..++.+-.. -+..+..+.+.+..++...-.++..
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~-~~~~~e~~i~~~~~ri~~~~~~l~~ 85 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKL-QVSKNEQTLQDTNAKIASIQKKMSE 85 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45677777778888888888888888888 7888888888888888888887753
No 44
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=31.41 E-value=42 Score=19.57 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=16.4
Q ss_pred CCCCCCCCCCCCCCCCcchHHHhhHHHHHHHHHHHHHHHhh
Q psy7549 4 QHAGNYYEPVPNQFDGGDAIHQENEQLTSDLRNKIQALKSL 44 (104)
Q Consensus 4 ~~~~~~~~~~p~~~~~~~~lE~qND~~ld~L~~kV~~LK~l 44 (104)
+++|. .+|..+ +++.|..||+ .|..+|..|+.-
T Consensus 9 ~~LG~---~~p~~~-d~eaLk~E~~----eLk~k~~~L~~~ 41 (53)
T 2yy0_A 9 HHLGA---ATPENP-EIELLRLELA----EMKEKYEAIVEE 41 (53)
T ss_dssp ----------CCCH-HHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHcCC---CCCChh-hHHHHHHHHH----HHHHHHHHHHHH
Confidence 45553 234455 5788887766 566666665543
No 45
>2y6w_A BCL-2-like protein 2; apoptosis; HET: PGE; 2.00A {Homo sapiens} PDB: 1mk3_A 1zy3_A
Probab=30.98 E-value=70 Score=22.49 Aligned_cols=45 Identities=13% Similarity=0.077 Sum_probs=25.8
Q ss_pred HHHHHHHHhhHHHHhhhhHHHHhhccchHHHHHHHHH-HHHhcCCc
Q psy7549 47 DIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARVVL-DIEKIKNP 91 (104)
Q Consensus 47 ~Ig~Ev~~Qn~~lLD~l~~~fd~t~~~L~~t~~Rl~~-m~~~~~n~ 91 (104)
.|++|++..+...+.+|-+.++-+...-..++..+.. +.+.|-||
T Consensus 61 ~~gdele~~~~~~f~~~~~~l~i~~~~~~~~f~~Va~elF~dGinW 106 (177)
T 2y6w_A 61 AAGDEFETRFRRTFSDLAAQLHVTPGSAQQRFTQVSDELFQGGPNW 106 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHhHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCCCH
Confidence 5677777766656777777666544444444444433 44555443
No 46
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=30.66 E-value=90 Score=20.68 Aligned_cols=28 Identities=32% Similarity=0.369 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhH
Q psy7549 30 LTSDLRNKIQALKSLTIDIGTEVKYQNE 57 (104)
Q Consensus 30 ~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~ 57 (104)
.+..|..+|..|+.--..|...+..|+.
T Consensus 17 ~~~~l~~~~~~l~~~l~~~~~~l~~~~~ 44 (182)
T 3kqg_A 17 KASALNTKIRALQGSLENMSKLLKRQND 44 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666655555555555555555
No 47
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=29.21 E-value=1e+02 Score=18.90 Aligned_cols=39 Identities=18% Similarity=0.257 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHhhhhH
Q psy7549 26 ENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDD 65 (104)
Q Consensus 26 qND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLD~l~~ 65 (104)
--+..+..|..+|..|......+..|...-.. .+..|..
T Consensus 26 RK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~-~i~~L~~ 64 (70)
T 1gd2_E 26 RKEDHLKALETQVVTLKELHSSTTLENDQLRQ-KVRQLEE 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 33668899999999999887777666554444 4444443
No 48
>4aq3_A Apoptosis regulator BCL-2, BCL-2-like protein 1; chimera; HET: 398; 2.40A {Homo sapiens} PDB: 1g5m_A 1gjh_A 1ysw_A* 2o21_A* 2o22_A*
Probab=28.60 E-value=37 Score=23.94 Aligned_cols=52 Identities=13% Similarity=-0.040 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhHHHHhhhhHHHHhhccchHHHHHHHHH-HHHhcCCchhhhhc
Q psy7549 46 IDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARVVL-DIEKIKNPNIDRGL 97 (104)
Q Consensus 46 i~Ig~Ev~~Qn~~lLD~l~~~fd~t~~~L~~t~~Rl~~-m~~~~~n~~~~~~l 97 (104)
..|++|++......+.+|...+.-+...-...+.++.. +.+.|-||-.-..|
T Consensus 60 r~igdele~~~~~~f~~~~~~L~it~~~a~~~F~~Va~elF~dGiNWGRIVaL 112 (169)
T 4aq3_A 60 RQAGDDFSRRYRGDFAEMSSQLHLTPFTARGRFATVVEELFRDGVNWGRIVAF 112 (169)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHCCCCTTTHHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 45688888877656777777765544444444444433 44555555443333
No 49
>2kxh_B Peptide of FAR upstream element-binding protein 1; RRM, FIR, FBP, protein-protein complex, protein binding; NMR {Homo sapiens}
Probab=28.34 E-value=16 Score=19.66 Aligned_cols=19 Identities=16% Similarity=0.494 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhhHHHHHHH
Q psy7549 33 DLRNKIQALKSLTIDIGTE 51 (104)
Q Consensus 33 ~L~~kV~~LK~lsi~Ig~E 51 (104)
.....|+|.|+|+-.|+.+
T Consensus 9 aFadA~~RaRQIaAKig~~ 27 (31)
T 2kxh_B 9 AFKDALQRARQIAAKIGGD 27 (31)
T ss_dssp HHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 4567788999999998865
No 50
>1x9t_B N-terminl peptide of fiber protein; jellyroll domain, insertion domain, anti-parallel beta sheets, virus like particle/peptide complex; HET: C15; 3.50A {Human adenovirus 2}
Probab=28.22 E-value=24 Score=18.19 Aligned_cols=15 Identities=27% Similarity=0.581 Sum_probs=10.9
Q ss_pred CCcCCCC-CCCCCCCC
Q psy7549 1 MRRQHAG-NYYEPVPN 15 (104)
Q Consensus 1 ~~~~~~~-~~~~~~p~ 15 (104)
|.|++.- ..|+|++-
T Consensus 1 mKR~r~~~ddFnPVYP 16 (26)
T 1x9t_B 1 MKRARPSEDTFNPVYP 16 (26)
T ss_pred CCccccccccCccccc
Confidence 6788877 77777654
No 51
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=28.09 E-value=1.2e+02 Score=19.18 Aligned_cols=40 Identities=18% Similarity=0.196 Sum_probs=25.4
Q ss_pred HHHHhhHHHHhhhhHHHHhhccchHHHHHHHHHHHHhcCCch
Q psy7549 51 EVKYQNEHLLRGMDDDFDRTGGFLNNSMARVVLDIEKIKNPN 92 (104)
Q Consensus 51 Ev~~Qn~~lLD~l~~~fd~t~~~L~~t~~Rl~~m~~~~~n~~ 92 (104)
.++-|+. |+.|..++++.++.+......+..+-+.-+..|
T Consensus 22 ~~~Lq~Q--l~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y 61 (83)
T 2xdj_A 22 LTQLQQQ--LSDNQSDIDSLRGQIQENQYQLNQVVERQKQIL 61 (83)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3455666 667777777777777777666666665544443
No 52
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=27.77 E-value=76 Score=17.13 Aligned_cols=10 Identities=40% Similarity=0.634 Sum_probs=4.3
Q ss_pred HHHHHHHHHh
Q psy7549 34 LRNKIQALKS 43 (104)
Q Consensus 34 L~~kV~~LK~ 43 (104)
|.+-|.+||.
T Consensus 19 Le~EV~RLk~ 28 (33)
T 3m48_A 19 LENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 53
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=27.41 E-value=83 Score=17.29 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhH
Q psy7549 31 TSDLRNKIQALKSLTIDIGTEVKYQNE 57 (104)
Q Consensus 31 ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~ 57 (104)
+.+|..||.-|.+=-..+.+||..=..
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 455566666665555555555554444
No 54
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=27.00 E-value=33 Score=18.70 Aligned_cols=12 Identities=42% Similarity=0.551 Sum_probs=9.4
Q ss_pred HHHHHhhHHHHhh
Q psy7549 50 TEVKYQNEHLLRG 62 (104)
Q Consensus 50 ~Ev~~Qn~~lLD~ 62 (104)
+|++.||. +|+.
T Consensus 17 ddlkrQN~-~Le~ 28 (34)
T 1a93_B 17 DDLKRQNA-LLEQ 28 (34)
T ss_dssp HHHHHHHH-HHHH
T ss_pred HHHHHHHH-HHHH
Confidence 67888888 8774
No 55
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=26.67 E-value=1.1e+02 Score=18.42 Aligned_cols=31 Identities=32% Similarity=0.341 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhHHHHhh
Q psy7549 31 TSDLRNKIQALKSLTIDIGTEVKYQNEHLLRG 62 (104)
Q Consensus 31 ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLD~ 62 (104)
-..|..||..|+.--.....|+..=|. ||.+
T Consensus 20 n~~L~~kv~~Le~~c~e~eQEieRL~~-LLkq 50 (58)
T 3a2a_A 20 NVQLAAKIQHLEFSCSEKEQEIERLNK-LLRQ 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 357889999999999999999999888 7754
No 56
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=26.07 E-value=1.1e+02 Score=18.36 Aligned_cols=56 Identities=7% Similarity=0.081 Sum_probs=37.2
Q ss_pred CcchHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHhhhhHHHHhhccchHH
Q psy7549 19 GGDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNN 76 (104)
Q Consensus 19 ~~~~lE~qND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLD~l~~~fd~t~~~L~~ 76 (104)
.-..+..|-++-.+-+...|..+=+-+..|.+=++.... |..-...|.+...+|++
T Consensus 9 ~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~--L~~~s~~F~~~a~~l~r 64 (74)
T 2nps_A 9 KIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSES--LSDNATAFSNRSKQLRR 64 (74)
T ss_dssp SSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 356777787777778888887777777777655555555 55556666665555443
No 57
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=25.50 E-value=1.8e+02 Score=20.56 Aligned_cols=55 Identities=5% Similarity=-0.086 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHhhhhHHHHhhccchHHHHHHHHHHH
Q psy7549 30 LTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARVVLDI 85 (104)
Q Consensus 30 ~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLD~l~~~fd~t~~~L~~t~~Rl~~m~ 85 (104)
.+..|......++.=-.+...|++..++ .++.+.+.+....-.+...-.++.++-
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K-~~e~l~DEl~aLqlq~n~lE~kl~kLq 123 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNK-NTERLNAALISGTIENNVLQQKLSDLK 123 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777888888888888999999999 999999998887777776666666554
No 58
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=25.30 E-value=76 Score=16.13 Aligned_cols=12 Identities=33% Similarity=0.711 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q psy7549 31 TSDLRNKIQALK 42 (104)
Q Consensus 31 ld~L~~kV~~LK 42 (104)
+.+|.+.|++||
T Consensus 9 vgelkgevralk 20 (27)
T 3v86_A 9 VGELKGEVRALK 20 (27)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHhHHHHHH
Confidence 344455555444
No 59
>1oxj_A RNA-binding protein smaug; SAM domain, PHAT domain; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 a.118.1.13
Probab=25.29 E-value=51 Score=23.92 Aligned_cols=68 Identities=10% Similarity=0.072 Sum_probs=51.7
Q ss_pred CcchHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHhhhhHHHHhhccchHHHHHHHHHHHHhc
Q psy7549 19 GGDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARVVLDIEKI 88 (104)
Q Consensus 19 ~~~~lE~qND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLD~l~~~fd~t~~~L~~t~~Rl~~m~~~~ 88 (104)
+++.|-.=.|+.++.++-....-|.|-..| .+++++.. .|-.|+.+.-.-+..|+.++.-+..+..+-
T Consensus 30 ~~e~~~~LTdedL~~~GVT~GARrKIL~aI-q~Lrer~~-~l~~le~~~~~g~~~l~~~l~el~~i~~tP 97 (173)
T 1oxj_A 30 TYEEMLLITEDFLQSVGVTKGASHKLALCI-DKLKERAN-ILNRVEQELLSGQMELSTAVEELTNIVLTP 97 (173)
T ss_dssp CHHHHTTCCHHHHHHTTCCHHHHHHHHHHH-HHHHHHHH-HHHHHHHHHHTTCSCHHHHHHHHHTTTTSC
T ss_pred CHHHHHhcCHHHHHHCCCchHHHHHHHHHH-HHHHHHhh-HHHHHHHHhhccchHHHHHHHHHHHHHhCC
Confidence 355555556667777776667888888888 57777777 899999999876678999999888776543
No 60
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=24.66 E-value=92 Score=16.89 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhH
Q psy7549 33 DLRNKIQALKSLTIDIGTEVKYQNE 57 (104)
Q Consensus 33 ~L~~kV~~LK~lsi~Ig~Ev~~Qn~ 57 (104)
+|..||--|=+=-..+.+||..=..
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444444443334444555544444
No 61
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=23.75 E-value=97 Score=16.81 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhH
Q psy7549 31 TSDLRNKIQALKSLTIDIGTEVKYQNE 57 (104)
Q Consensus 31 ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~ 57 (104)
+.+|..||--|=+=...+.+||..=..
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 345555555555555555566554444
No 62
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=23.54 E-value=2.7e+02 Score=23.49 Aligned_cols=58 Identities=5% Similarity=0.155 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHHHhhHH-HHHHHHHHhhHHHHhhhhHHHHhhccchHHHHHHHHHHHH
Q psy7549 27 NEQLTSDLRNKIQALKSLTI-DIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARVVLDIE 86 (104)
Q Consensus 27 ND~~ld~L~~kV~~LK~lsi-~Ig~Ev~~Qn~~lLD~l~~~fd~t~~~L~~t~~Rl~~m~~ 86 (104)
|+..++.+++.+..++++.. .+..|..++|+ ++.|...++.....++.-..+|.++++
T Consensus 116 n~~I~~k~g~~l~~v~~~~~~~~~~e~~e~~q--~~~LekAl~s~~~i~~~e~~~l~~L~~ 174 (526)
T 3iyk_A 116 NDKIKEKFGKELEEVYNFMNGEANAEIEDEKQ--FDILNKAVTSYNKILTEEDLQMRRLAT 174 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34444555555666655543 45556666777 666777777777777776666666654
No 63
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=23.20 E-value=1.2e+02 Score=17.55 Aligned_cols=36 Identities=31% Similarity=0.456 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhh--HHHHhhhhHHHHhhc
Q psy7549 33 DLRNKIQALKSLTIDIGTEVKYQN--EHLLRGMDDDFDRTG 71 (104)
Q Consensus 33 ~L~~kV~~LK~lsi~Ig~Ev~~Qn--~~lLD~l~~~fd~t~ 71 (104)
-|..||.+||.=..++ |-++|| + ++.+|.+...+..
T Consensus 7 ylrkkiarlkkdnlql--erdeqnlek-iianlrdeiarle 44 (52)
T 3he5_B 7 YLRKKIARLKKDNLQL--ERDEQNLEK-IIANLRDEIARLE 44 (52)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhh--hhhHhhHHH-HHHHHHHHHHHHH
Confidence 4778888888765554 444554 4 5666666655543
No 64
>2w3l_A BCL2-XL, apoptosis regulator BCL-2; HET: DRO; 2.10A {Homo sapiens} PDB: 2o2f_A*
Probab=22.86 E-value=43 Score=22.57 Aligned_cols=45 Identities=16% Similarity=0.032 Sum_probs=23.7
Q ss_pred HHHHHHHHhhHHHHhhhhHHHHhhccchHHHHHHHHH-HHHhcCCc
Q psy7549 47 DIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARVVL-DIEKIKNP 91 (104)
Q Consensus 47 ~Ig~Ev~~Qn~~lLD~l~~~fd~t~~~L~~t~~Rl~~-m~~~~~n~ 91 (104)
.|++|++..+...+.+|-+.++-+......++..+.. +.+.|=||
T Consensus 37 ~~gdele~~~~~~f~~~~~~l~i~~~~~~~~f~~Va~elF~dGinW 82 (144)
T 2w3l_A 37 EAGDDFSRRYRRDFAEMSSGLHLTPFTARGRFATVVEELFRDGVNW 82 (144)
T ss_dssp HHHHHHHHHTHHHHHHHHTTCCCCTTTHHHHHHHHHHHHTTTCCCH
T ss_pred HHHHHHHHHhHHHHHHHHHHcCCCCccHHHHHHHHHHHHhcCCCCH
Confidence 3457887777545666666654434333444444433 44445443
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=22.28 E-value=2.7e+02 Score=21.50 Aligned_cols=35 Identities=14% Similarity=-0.017 Sum_probs=19.7
Q ss_pred HHHHHhhHHHHhhhhHHHHhhccchHHHHHHHHHHH
Q psy7549 50 TEVKYQNEHLLRGMDDDFDRTGGFLNNSMARVVLDI 85 (104)
Q Consensus 50 ~Ev~~Qn~~lLD~l~~~fd~t~~~L~~t~~Rl~~m~ 85 (104)
.|-...-. ++++++...+.+..++..+..|-..++
T Consensus 449 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (487)
T 3oja_A 449 EENARLKK-LNGEADLALASANATLQELVVREQNLA 483 (487)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhh-hhhhhhhhhHhcccHHHHHHHHHHHHH
Confidence 33444445 566666666666666666665555544
No 66
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=21.90 E-value=65 Score=17.40 Aligned_cols=16 Identities=38% Similarity=0.517 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhhHH
Q psy7549 31 TSDLRNKIQALKSLTI 46 (104)
Q Consensus 31 ld~L~~kV~~LK~lsi 46 (104)
+.+|.++|+.||.-..
T Consensus 3 vsalkekvsalkeqfl 18 (36)
T 3tq2_A 3 VSALKEKVSALKEQFL 18 (36)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4567778888776443
No 67
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=21.83 E-value=1.3e+02 Score=18.79 Aligned_cols=24 Identities=13% Similarity=0.340 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Q psy7549 31 TSDLRNKIQALKSLTIDIGTEVKY 54 (104)
Q Consensus 31 ld~L~~kV~~LK~lsi~Ig~Ev~~ 54 (104)
+++|...|+.|+.++.++--++-+
T Consensus 5 i~eLkkevkKL~~~A~q~kmdLHD 28 (71)
T 2js5_A 5 AEELKAKLKKLNAQATALKMDLHD 28 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Confidence 578999999999999888776643
No 68
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=21.44 E-value=1.7e+02 Score=18.70 Aligned_cols=57 Identities=23% Similarity=0.287 Sum_probs=43.1
Q ss_pred chHHHhhHHHHHHHHHHHHHHHh---------hHHHHHHHHHHhhHHHHhhhhHHHHhhccchHHHH
Q psy7549 21 DAIHQENEQLTSDLRNKIQALKS---------LTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSM 78 (104)
Q Consensus 21 ~~lE~qND~~ld~L~~kV~~LK~---------lsi~Ig~Ev~~Qn~~lLD~l~~~fd~t~~~L~~t~ 78 (104)
+..|+|-......|..++.++.. .-..|...+++=.. +|+.|+-..-......+..+
T Consensus 18 e~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~e-Ll~qMelE~r~~p~s~R~~~ 83 (102)
T 2qyw_A 18 EKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANE-TLAEMEEELRYAPLTFRNPM 83 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHH
Confidence 56788888888999999998854 34567788888888 99999888777665555444
No 69
>2nl9_A Fusion protein consisting of induced myeloid LEUK differentiation protein MCL-1 homolog...; apoptosis, MCL-1, BIM; HET: MSE; 1.55A {Rattus norvegicus} PDB: 2nla_A 3d7v_A 3io9_A 3kj0_A 2pqk_A 3kj1_A 3kj2_A 3kz0_A 3mk8_A 1wsx_A 2jm6_B 2roc_A 2rod_A 2kbw_A 3mk8_B
Probab=21.43 E-value=67 Score=21.94 Aligned_cols=51 Identities=22% Similarity=0.169 Sum_probs=28.3
Q ss_pred HHHHHHHHhhHHHHhhhhHHHHhhccchHHHHHHHHH-HHHhcC-Cchhhhhc
Q psy7549 47 DIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARVVL-DIEKIK-NPNIDRGL 97 (104)
Q Consensus 47 ~Ig~Ev~~Qn~~lLD~l~~~fd~t~~~L~~t~~Rl~~-m~~~~~-n~~~~~~l 97 (104)
.|++|++..+...+.+|-+.++-+...--.++.++.. +.+.|. ||-.-..|
T Consensus 45 ~i~dele~~~~~~f~~~~~~l~i~~~~~~~~f~~Va~elF~dGi~nWGRIVal 97 (157)
T 2nl9_A 45 RVGDGVQRNHETAFQGMLRKLDIKNEDDVKSLSRVMIHVFSDGVTNWGRIVTL 97 (157)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHCCCSTTCCHHHHHHHHHHGGGSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhcCCCCChHHHHHH
Confidence 4577887777656777777776443322233444433 556664 55443333
No 70
>2l3n_A DNA-binding protein RAP1, telomere length regulat; TAZ1; NMR {Schizosaccharomyces pombe}
Probab=21.31 E-value=1.4e+02 Score=19.36 Aligned_cols=38 Identities=18% Similarity=0.366 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHhhHHHHhhhhHHHHhhccchHHHHHHHH
Q psy7549 44 LTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARVV 82 (104)
Q Consensus 44 lsi~Ig~Ev~~Qn~~lLD~l~~~fd~t~~~L~~t~~Rl~ 82 (104)
+-.+|.+=++.-|. --..+-+.|++++++++.+..++-
T Consensus 14 vdeaidnilrytns-teqqfleamestggrvriaiakll 51 (104)
T 2l3n_A 14 VDEAIDNILRYTNS-TEQQFLEAMESTGGRVRIAIAKLL 51 (104)
T ss_dssp HHHHHHHHHHHHTC-CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccc-hHHHHHHHHHhcCCeeehHHHHHH
Confidence 34455566666666 555666788999999999887763
No 71
>2ad6_B Methanol dehydrogenase subunit 2; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: a.137.2.1 PDB: 1g72_B* 2ad7_B* 2ad8_B* 4aah_B*
Probab=21.29 E-value=24 Score=22.04 Aligned_cols=7 Identities=57% Similarity=1.232 Sum_probs=5.0
Q ss_pred CCCCCCC
Q psy7549 6 AGNYYEP 12 (104)
Q Consensus 6 ~~~~~~~ 12 (104)
+||-|+|
T Consensus 24 aGsKYDP 30 (69)
T 2ad6_B 24 AGSKYDP 30 (69)
T ss_dssp TTSTTCC
T ss_pred ccCcCCC
Confidence 5777777
No 72
>1r2d_A Apoptosis regulator BCL-X; monomeric, alpha-helical; 1.95A {Homo sapiens} SCOP: f.1.4.1 PDB: 2b48_A 1r2i_A 1r2h_A 1r2g_A 1r2e_A 1bxl_A 1lxl_A 1maz_A 3cva_X 1ysg_A* 1ysi_A* 1ysn_A* 2o1y_A* 2yxj_A* 3pl7_A 3qkd_A* 1g5j_A 2lp8_A* 2lpc_A
Probab=20.30 E-value=58 Score=24.16 Aligned_cols=54 Identities=19% Similarity=0.158 Sum_probs=30.7
Q ss_pred HHHHhhHHHHHHHHHHhhHHHHhhhhHHHHhhccchHHHHHHHHH-HHHhcCCch
Q psy7549 39 QALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARVVL-DIEKIKNPN 92 (104)
Q Consensus 39 ~~LK~lsi~Ig~Ev~~Qn~~lLD~l~~~fd~t~~~L~~t~~Rl~~-m~~~~~n~~ 92 (104)
..+...=..|++|++..+..++.+|...+.-+......++.+|.. +.+.|=||-
T Consensus 84 ~~v~~~Lr~lgdElE~~~~~~f~~m~~qL~it~~~a~~~F~~Va~elF~DGINWG 138 (218)
T 1r2d_A 84 AAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWG 138 (218)
T ss_dssp HHHHHHHHHHHHHHHHHCCSTTHHHHHHHCCCTTCCHHHHHHHHGGGGTTCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHhcCCCcHH
Confidence 344444455678887766557778877776655555555544433 344454443
Done!