RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7549
         (104 letters)



>d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 388

 Score = 24.4 bits (53), Expect = 3.9
 Identities = 8/40 (20%), Positives = 15/40 (37%)

Query: 21  DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLL 60
             I  E+ QL +D+R       S   ++    + +   L 
Sbjct: 128 TLISNESSQLDADVRATYANYNSAKTNLAAAERKKTGDLS 167


>d2nt0a1 b.71.1.2 (A:1-77,A:432-497) Glucosylceramidase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 143

 Score = 23.3 bits (50), Expect = 6.5
 Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 3/45 (6%)

Query: 42  KSLTIDIGTEVKYQNEHL-LRGMDDDFDRTGGFLN--NSMARVVL 83
             L + +  E K+Q + + L     +       ++   S   VVL
Sbjct: 63  TGLLLTLQPEQKFQKQRVGLVASQKNDLDAVALMHPDGSAVVVVL 107


>d2i00a1 d.106.1.4 (A:301-406) Putative acetyltransferase EF2353
          {Enterococcus faecalis [TaxId: 1351]}
          Length = 106

 Score = 22.9 bits (49), Expect = 6.9
 Identities = 8/29 (27%), Positives = 13/29 (44%)

Query: 16 QFDGGDAIHQENEQLTSDLRNKIQALKSL 44
           +D  D +   +E L + +   IQ L  L
Sbjct: 37 IWDENDQVTITDEPLGTAVHLDIQTLTCL 65


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.136    0.388 

Gapped
Lambda     K      H
   0.267   0.0602    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 395,134
Number of extensions: 16513
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 7
Length of query: 104
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 39
Effective length of database: 1,515,146
Effective search space: 59090694
Effective search space used: 59090694
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.2 bits)