BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy755
(183 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
Length = 319
Score = 181 bits (458), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 87/183 (47%), Positives = 124/183 (67%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDV 60
MG+ MA+NL+K+G+ +I+YD DA + G + S + +A A+ II+MLP S +
Sbjct: 33 MGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINA 92
Query: 61 LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEA 120
++AY G++GILK K G ++IDSST+DP V + L+ + F+DAPVSGG AA+
Sbjct: 93 IEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSG 152
Query: 121 TLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNL 180
LTFMVGG + A+ +L CMG N+V+CG G GQ AK+CNNMLL ++M+G AEAMNL
Sbjct: 153 NLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNL 212
Query: 181 GVK 183
G++
Sbjct: 213 GIR 215
>pdb|2GF2|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
Length = 296
Score = 181 bits (458), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 87/183 (47%), Positives = 124/183 (67%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDV 60
MG+ MA+NL+K+G+ +I+YD DA + G + S + +A A+ II+MLP S +
Sbjct: 11 MGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINA 70
Query: 61 LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEA 120
++AY G++GILK K G ++IDSST+DP V + L+ + F+DAPVSGG AA+
Sbjct: 71 IEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSG 130
Query: 121 TLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNL 180
LTFMVGG + A+ +L CMG N+V+CG G GQ AK+CNNMLL ++M+G AEAMNL
Sbjct: 131 NLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNL 190
Query: 181 GVK 183
G++
Sbjct: 191 GIR 193
>pdb|3OBB|A Chain A, Crystal Structure Of A Possible 3-Hydroxyisobutyrate
Dehydrogenase From Pseudomonas Aeruginosa Pao1
Length = 300
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/181 (48%), Positives = 109/181 (60%)
Query: 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVL 61
G+ A NLLK G+ + V+D A L GA+ A S GA+ +IS LPASQ V
Sbjct: 15 GAPXATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISXLPASQHVE 74
Query: 62 DAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEAT 121
Y DG+L H PG +V++ ST+ P + + ARE+ + LDAPVSGGT A T
Sbjct: 75 GLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAXLDAPVSGGTAGAAAGT 134
Query: 122 LTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLG 181
LTF VGGD +LEKA+P+ + GRNI H G G GQVAK+CNN LL V +G AEA LG
Sbjct: 135 LTFXVGGDAEALEKARPLFEAXGRNIFHAGPDGAGQVAKVCNNQLLAVLXIGTAEAXALG 194
Query: 182 V 182
V
Sbjct: 195 V 195
>pdb|3Q3C|A Chain A, Crystal Structure Of A Serine Dehydrogenase From
Pseudomonas Aeruginosa Pao1 In Complex With Nad
Length = 299
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/181 (48%), Positives = 109/181 (60%)
Query: 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVL 61
G+ A NLLK G+ + V+D A L GA+ A S GA+ +IS LPASQ V
Sbjct: 14 GAPXATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISXLPASQHVE 73
Query: 62 DAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEAT 121
Y DG+L H PG +V++ ST+ P + + ARE+ + LDAPVSGGT A T
Sbjct: 74 GLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAXLDAPVSGGTAGAAAGT 133
Query: 122 LTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLG 181
LTF VGGD +LEKA+P+ + GRNI H G G GQVAK+CNN LL V +G AEA LG
Sbjct: 134 LTFXVGGDAEALEKARPLFEAXGRNIFHAGPDGAGQVAKVCNNQLLAVLXIGTAEAXALG 193
Query: 182 V 182
V
Sbjct: 194 V 194
>pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|B Chain B, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|C Chain C, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|D Chain D, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
Length = 301
Score = 129 bits (324), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 106/183 (57%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDV 60
MG MA NLLK G V +D + +GA + +A+ ++ I + LP + V
Sbjct: 15 MGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIV 74
Query: 61 LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEA 120
+G G+L K G +++D S+V P ++ +A EK I ++DAPVSGGTK A+
Sbjct: 75 ETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDAPVSGGTKGAEAG 134
Query: 121 TLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNL 180
TLT MVG ++ EK +P+L +G++I H GD+G G K+ NN+LLG M +AEA+ L
Sbjct: 135 TLTIMVGASEAVFEKIQPVLSVIGKDIYHVGDTGAGDAVKIVNNLLLGCNMASLAEALVL 194
Query: 181 GVK 183
GVK
Sbjct: 195 GVK 197
>pdb|1VPD|A Chain A, X-Ray Crystal Structure Of Tartronate Semialdehyde
Reductase [salmonella Typhimurium Lt2]
Length = 299
Score = 120 bits (302), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 104/182 (57%)
Query: 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVL 61
G ++NLLK G+ ++V D+N +A + GA A + +A + II+ LP S V
Sbjct: 17 GKPXSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITXLPNSPHVK 76
Query: 62 DAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEAT 121
+ G +GI++ AKPG ++ID S++ P + +S+ + K + LDAPVSGG A + T
Sbjct: 77 EVALGENGIIEGAKPGTVLIDXSSIAPLASREISDALKAKGVEXLDAPVSGGEPKAIDGT 136
Query: 122 LTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLG 181
L+ VGGDK+ +K + K ++VH GD G G V KL N +++ + + +EA+ L
Sbjct: 137 LSVXVGGDKAIFDKYYDLXKAXAGSVVHTGDIGAGNVTKLANQVIVALNIAAXSEALTLA 196
Query: 182 VK 183
K
Sbjct: 197 TK 198
>pdb|1WP4|A Chain A, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|B Chain B, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|C Chain C, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|D Chain D, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
Length = 289
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 96/178 (53%), Gaps = 10/178 (5%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDV 60
M H+AR +V+++ + + +E + A+ L +A A I + LP +++V
Sbjct: 16 MAGHLARRF-----PTLVWNRTFEKALRHQEEFGSEAVPLERVAE-ARVIFTCLPTTREV 69
Query: 61 LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEA 120
Y+ ++ + + + G +D+++ +P+ + L+ REK +T+LDAPVSGGT A+
Sbjct: 70 ---YEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAG 126
Query: 121 TLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAM 178
TLT M+GG + ++E+ +P L + +VH G G G K NN LL V + E +
Sbjct: 127 TLTVMLGGPEEAVERVRPFL-AYAKKVVHVGPVGAGHAVKAINNALLAVNLWAAGEGL 183
>pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
Length = 287
Score = 104 bits (259), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 94/183 (51%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDV 60
MGS MA+NL+K G V +++++ + ++ LA GA A + + +ML
Sbjct: 12 MGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPXEVVESCPVTFAMLADPAAA 71
Query: 61 LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEA 120
+ G G+L+ G +D STVDP Q + K FL+APVSG K A++
Sbjct: 72 EEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGSKKPAEDG 131
Query: 121 TLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNL 180
TL + GD++ ++A P + MG+ I+H GD G G KL NM++G M E + L
Sbjct: 132 TLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLAL 191
Query: 181 GVK 183
G K
Sbjct: 192 GEK 194
>pdb|2CVZ|A Chain A, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|B Chain B, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|C Chain C, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|D Chain D, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
Length = 289
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 94/175 (53%), Gaps = 10/175 (5%)
Query: 4 HMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDA 63
H+AR +V+++ + + +E + A+ L +A A I + LP +++V
Sbjct: 19 HLARRF-----PTLVWNRTFEKALRHQEEFGSEAVPLERVAE-ARVIFTCLPTTREV--- 69
Query: 64 YDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLT 123
Y+ ++ + + + G +D+++ +P+ + L+ REK +T+LDAPVSGGT A+ TLT
Sbjct: 70 YEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLT 129
Query: 124 FMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAM 178
+GG + ++E+ +P L + +VH G G G K NN LL V + E +
Sbjct: 130 VXLGGPEEAVERVRPFL-AYAKKVVHVGPVGAGHAVKAINNALLAVNLWAAGEGL 183
>pdb|3PDU|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
Length = 287
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 90/181 (49%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDV 60
MG MA NL++ G DV V+++N L GA A S + + + + I+ML
Sbjct: 12 MGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAA 71
Query: 61 LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEA 120
+ G++G+L+ G ID STVD + + + FL+APVSG K A++
Sbjct: 72 REVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGTKKPAEDG 131
Query: 121 TLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNL 180
TL + GD+S A P +G+ +H G+ G G KL NM++G M + E M L
Sbjct: 132 TLIILAAGDQSLFTDAGPAFAALGKKCLHLGEVGQGARMKLVVNMIMGQMMTALGEGMAL 191
Query: 181 G 181
G
Sbjct: 192 G 192
>pdb|4DLL|A Chain A, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase
From Polaromonas Sp. Js666
pdb|4DLL|B Chain B, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase
From Polaromonas Sp. Js666
Length = 320
Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 93/181 (51%), Gaps = 8/181 (4%)
Query: 6 ARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLP---ASQDVLD 62
AR L + G+ + V+++ + +LA GA + A A+ ++S L QDVL
Sbjct: 47 ARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSXLENGAVVQDVLF 106
Query: 63 AYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATL 122
A G+ KPG + +D +++ P+ + + I LD PVSGGT A++ TL
Sbjct: 107 A----QGVAAAXKPGSLFLDXASITPREARDHAARLGALGIAHLDTPVSGGTVGAEQGTL 162
Query: 123 TFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGV 182
GG + E++ P+LK GR H G G+GQ+ KL N ++G+T+ VAEA+
Sbjct: 163 VIXAGGKPADFERSLPLLKVFGRA-THVGPHGSGQLTKLANQXIVGITIGAVAEALLFAT 221
Query: 183 K 183
K
Sbjct: 222 K 222
>pdb|1YB4|A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
pdb|1YB4|B Chain B, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
Length = 295
Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 91/182 (50%), Gaps = 1/182 (0%)
Query: 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVL 61
GS A NL + GH + V A + L+ N+ + + A+ I +P + V
Sbjct: 15 GSPXAINLARAGHQLHVTTIGPVADELLSLGAVNVETA-RQVTEFADIIFIXVPDTPQVE 73
Query: 62 DAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEAT 121
D G G K + G ++D S++ P + + E +LDAPVSGG A+E T
Sbjct: 74 DVLFGEHGCAKTSLQGKTIVDXSSISPIETKRFAQRVNEXGADYLDAPVSGGEIGAREGT 133
Query: 122 LTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLG 181
L+ VGG++ ++ KP+ +G+NI G +G+GQ K+ N +++ + + V+EA+
Sbjct: 134 LSIXVGGEQKVFDRVKPLFDILGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALVFA 193
Query: 182 VK 183
K
Sbjct: 194 SK 195
>pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis
(Atglyr1)
Length = 310
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 88/183 (48%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDV 60
MG M+ NLLKNG V V+++ L + GA++ S + + ++ I+ML
Sbjct: 32 MGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAA 91
Query: 61 LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEA 120
L G+L+ G ID STVD + ++ K F++ PVSG K A++
Sbjct: 92 LSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVSGSKKPAEDG 151
Query: 121 TLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNL 180
L + GDK+ E++ P +G+ + G GNG KL NM++G M +E + L
Sbjct: 152 QLIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSMMNAFSEGLVL 211
Query: 181 GVK 183
K
Sbjct: 212 ADK 214
>pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|B Chain B, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|C Chain C, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|D Chain D, Structure Of The Cytokine-Like Nuclear Factor N-Pac
Length = 316
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 84/180 (46%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDV 60
MGS + NLLK GH V V+++ + +EGA + + + + S + + + +
Sbjct: 41 MGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAA 100
Query: 61 LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEA 120
D G G+L+ +PG +D STVD L+ + + FL+APVSG + + +
Sbjct: 101 KDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDG 160
Query: 121 TLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNL 180
L + GD+ E + MG+ G+ GN L NM+ G M +AE + L
Sbjct: 161 MLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTL 220
>pdb|3QHA|A Chain A, Crystal Structure Of A Putative Oxidoreductase From
Mycobacterium Avium 104
pdb|3QHA|B Chain B, Crystal Structure Of A Putative Oxidoreductase From
Mycobacterium Avium 104
Length = 296
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 89/182 (48%), Gaps = 8/182 (4%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQ-- 58
MG+ MA + + V VYD +A LA+ GA +A S++ +A+ I++L +Q
Sbjct: 26 MGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAAADLIHITVLDDAQVR 85
Query: 59 DVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQ 118
+V+ G HAKPG ++ ST+ L+ + + I +DAPVSGG AA
Sbjct: 86 EVVGELAG------HAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSGGAAAAA 139
Query: 119 EATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAM 178
L MVG D+ E+ KP K ++H G+ G G KL NML + EAM
Sbjct: 140 RGELATMVGADREVYERIKPAFKHWAAVVIHAGEPGAGTRMKLARNMLTFTSYAAACEAM 199
Query: 179 NL 180
L
Sbjct: 200 KL 201
>pdb|3G0O|A Chain A, Crystal Structure Of 3-Hydroxyisobutyrate Dehydrogenase
(Ygbj) From Salmonella Typhimurium
Length = 303
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 73/166 (43%), Gaps = 2/166 (1%)
Query: 6 ARNLLKNGHDVIVYDKNTDASQTLAKEGA-NMALSLSTLASGAEFIISMLPASQDVLDAY 64
AR+ L+ G D N A L EGA A S A + ++ ++ + V
Sbjct: 23 ARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVL 82
Query: 65 DGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTF 124
G DG+ KPG V SST+ Q ++ + LDAPVSGG A + T
Sbjct: 83 FGEDGVAHLXKPGSAVXVSSTISSADAQEIAAALTALNLNXLDAPVSGGAVKAAQGEXTV 142
Query: 125 MVGGDKSSLEKAKPILKCMGRNIVHCGDS-GNGQVAKLCNNMLLGV 169
G +++ + KP+L + N+ D+ G G K+ + +L GV
Sbjct: 143 XASGSEAAFTRLKPVLDAVASNVYRISDTPGAGSTVKIIHQLLAGV 188
>pdb|4E21|A Chain A, The Crystal Structure Of 6-Phosphogluconate Dehydrogenase
From Geobacter Metallireducens
pdb|4E21|B Chain B, The Crystal Structure Of 6-Phosphogluconate Dehydrogenase
From Geobacter Metallireducens
Length = 358
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 84/201 (41%), Gaps = 36/201 (17%)
Query: 7 RNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLAS---GAEFIISMLPASQDVLDA 63
R L K GH+ +VYD N +A Q L +EG A S+ + + +PA+ V+D+
Sbjct: 39 RRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLXVPAA--VVDS 96
Query: 64 YDGSDGILKHAKPGV----IVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQE 119
L+ P + IVID Q ++ R + IT++D SGG E
Sbjct: 97 ------XLQRXTPLLAANDIVIDGGNSHYQDDIRRADQXRAQGITYVDVGTSGGIFGL-E 149
Query: 120 ATLTFMVGGDKSSLEKAKPILKCM-----------GRN---------IVHCGDSGNGQVA 159
+GG+K ++E+ P+ + + GR +HCG SG G
Sbjct: 150 RGYCLXIGGEKQAVERLDPVFRTLAPGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFV 209
Query: 160 KLCNNMLLGVTMMGVAEAMNL 180
K +N + AE +N+
Sbjct: 210 KXVHNGIEYGLXAAYAEGLNI 230
>pdb|4GBJ|A Chain A, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|B Chain B, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|C Chain C, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|D Chain D, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
Length = 297
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 83/184 (45%), Gaps = 3/184 (1%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDV 60
+G+ +A LL+ G++++V+++ ++ L K GA + + + + S+L V
Sbjct: 16 LGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAV 75
Query: 61 LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEA 120
+ + + + K K GV V ST+ P+ + L+ + ++ AP+ +A +
Sbjct: 76 EELFS-XELVEKLGKDGVHV-SXSTISPETSRQLAQVHEWYGAHYVGAPIFARPEAVRAK 133
Query: 121 TLTFMVGGDKSSLEKAKPILKCMGRNIVHCG-DSGNGQVAKLCNNMLLGVTMMGVAEAMN 179
+ G+ + E+ KPI++ + + G D G V KL N + ++ EA
Sbjct: 134 VGNICLSGNAGAKERIKPIVENFVKGVFDFGDDPGAANVIKLAGNFXIACSLEXXGEAFT 193
Query: 180 LGVK 183
K
Sbjct: 194 XAEK 197
>pdb|2W90|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W90|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 471
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 85/194 (43%), Gaps = 19/194 (9%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKE--GANMALSLSTLASGAEFIISMLPASQ 58
MG ++A N+ G+ V VY++ + + +E G N+ + S EF+ ++ +
Sbjct: 16 MGKNLALNIESKGYSVAVYNRLREKTDEFLQEAKGKNIVGTYSI----EEFVNALEKPRK 71
Query: 59 DVLDAYDG--SDGILKHAKP----GVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSG 112
+L G +D ++ KP G IVID + Q + E I F+ VSG
Sbjct: 72 ILLMVKAGAPTDATIEQLKPHLEKGDIVIDGGNTYFKDTQRRNKELAELGIHFIGTGVSG 131
Query: 113 GTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNI------VHCGDSGNGQVAKLCNNML 166
G + A + + M GG K + E +PI + + + + G G G K+ +N +
Sbjct: 132 GEEGALKGP-SIMPGGQKEAHELVRPIFEAIAAKVDGEPCTTYIGPDGAGHYVKMVHNGI 190
Query: 167 LGVTMMGVAEAMNL 180
M +AEA L
Sbjct: 191 EYGDMQLIAEAYFL 204
>pdb|2W8Z|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W8Z|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 470
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 85/194 (43%), Gaps = 19/194 (9%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKE--GANMALSLSTLASGAEFIISMLPASQ 58
MG ++A N+ G+ V VY++ + + +E G N+ + S EF+ ++ +
Sbjct: 15 MGKNLALNIESKGYSVAVYNRLREKTDEFLQEAKGKNIVGTYSI----EEFVNALEKPRK 70
Query: 59 DVLDAYDG--SDGILKHAKP----GVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSG 112
+L G +D ++ KP G IVID + Q + E I F+ VSG
Sbjct: 71 ILLMVKAGAPTDATIEQLKPHLEKGDIVIDGGNTYFKDTQRRNKELAELGIHFIGTGVSG 130
Query: 113 GTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNI------VHCGDSGNGQVAKLCNNML 166
G + A + + M GG K + E +PI + + + + G G G K+ +N +
Sbjct: 131 GEEGALKGP-SIMPGGQKEAHELVRPIFEAIAAKVDGEPCTTYIGPDGAGHYVKMVHNGI 189
Query: 167 LGVTMMGVAEAMNL 180
M +AEA L
Sbjct: 190 EYGDMQLIAEAYFL 203
>pdb|2IZ0|A Chain A, Pex Inhibitor-Home Data
pdb|2IZ0|B Chain B, Pex Inhibitor-Home Data
pdb|2IZ0|C Chain C, Pex Inhibitor-Home Data
pdb|2IZ1|A Chain A, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|B Chain B, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|C Chain C, 6pdh Complexed With Pex Inhibitor Synchrotron Data
Length = 474
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 21/196 (10%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDV 60
MG ++A N+ G+ V +Y++ T ++ + KE + L + EF+ S+ + +
Sbjct: 16 MGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLE--EFVGSLEKPRRIM 73
Query: 61 LDAYDG--SDGILKHAKP----GVIVIDSSTVDPQVPQTLSNLAR--EKQITFLDAPVSG 112
L G +D +K P G I+ID P T+ A + I F+ VSG
Sbjct: 74 LMVQAGAATDATIKSLLPLLDIGDILIDGGNT--HFPDTMRRNAELADSGINFIGTGVSG 131
Query: 113 GTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRN--------IVHCGDSGNGQVAKLCNN 164
G K A + M GG K + + PI + + + + G +G G K+ +N
Sbjct: 132 GEKGALLGP-SMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVHN 190
Query: 165 MLLGVTMMGVAEAMNL 180
+ M +AE+ +L
Sbjct: 191 GIEYGDMQLIAESYDL 206
>pdb|2IYP|A Chain A, Product Rup
pdb|2IYP|B Chain B, Product Rup
pdb|2IYP|C Chain C, Product Rup
Length = 473
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 21/196 (10%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDV 60
MG ++A N+ G+ V +Y++ T ++ + KE + L + EF+ S+ + +
Sbjct: 15 MGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLE--EFVGSLEKPRRIM 72
Query: 61 LDAYDG--SDGILKHAKP----GVIVIDSSTVDPQVPQTLSNLAR--EKQITFLDAPVSG 112
L G +D +K P G I+ID P T+ A + I F+ VSG
Sbjct: 73 LMVQAGAATDATIKSLLPLLDIGDILIDGGNT--HFPDTMRRNAELADSGINFIGTGVSG 130
Query: 113 GTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRN--------IVHCGDSGNGQVAKLCNN 164
G K A + M GG K + + PI + + + + G +G G K+ +N
Sbjct: 131 GEKGALLGP-SMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVHN 189
Query: 165 MLLGVTMMGVAEAMNL 180
+ M +AE+ +L
Sbjct: 190 GIEYGDMQLIAESYDL 205
>pdb|2IYO|A Chain A, Structural Characterization Of A Bacterial 6pdh Reveals
Aspects Of Specificity, Mechanism And Mode Of Inhibition
Length = 472
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 21/196 (10%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDV 60
MG ++A N+ G+ V +Y++ T ++ + KE + L + EF+ S+ + +
Sbjct: 14 MGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLE--EFVGSLEKPRRIM 71
Query: 61 LDAYDG--SDGILKHAKP----GVIVIDSSTVDPQVPQTLSNLAR--EKQITFLDAPVSG 112
L G +D +K P G I+ID P T+ A + I F+ VSG
Sbjct: 72 LMVQAGAATDATIKSLLPLLDIGDILIDGGNT--HFPDTMRRNAELADSGINFIGTGVSG 129
Query: 113 GTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRN--------IVHCGDSGNGQVAKLCNN 164
G K A + M GG K + + PI + + + + G +G G K+ +N
Sbjct: 130 GEKGALLGP-SMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVHN 188
Query: 165 MLLGVTMMGVAEAMNL 180
+ M +AE+ +L
Sbjct: 189 GIEYGDMQLIAESYDL 204
>pdb|2ZYG|A Chain A, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase
pdb|2ZYG|B Chain B, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase
Length = 480
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 88/201 (43%), Gaps = 32/201 (15%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDV 60
MG ++A N+ G+ V V++++ + ++ + E N L + EF+ S+ + +
Sbjct: 26 MGRNLALNIESRGYTVSVFNRSREKTEEVIAE--NPGKKLVPYYTVQEFVESLETPRRIL 83
Query: 61 L--DAYDGSDGILKHAKP----GVIVIDSSTVDPQVPQTLSNLAREKQIT-----FLDAP 109
L A G+D + KP G I+ID Q + R ++++ F+
Sbjct: 84 LMVKAGAGTDSAIDSLKPYLDKGDIIIDGGNTFFQ-----DTIRRNRELSAEGFNFIGTG 138
Query: 110 VSGGTKAAQEATL---TFMVGGDKSSLEKAKPILKCMGRN-------IVHCGDSGNGQVA 159
VSGG +E TL + M GG K + E PILK + + + G G G
Sbjct: 139 VSGG----EEGTLKGPSIMPGGQKEAYELVAPILKQIAAVAEDGEPCVTYIGADGAGHYV 194
Query: 160 KLCNNMLLGVTMMGVAEAMNL 180
K+ +N + M +AEA L
Sbjct: 195 KMVHNGIEYGDMQLIAEAYAL 215
>pdb|1PGN|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGO|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGP|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGQ|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|2PGD|A Chain A, The Structure Of 6-Phosphogluconate Dehydrogenase Refined
At 2 Angstroms Resolution
Length = 482
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 99 REKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNI-------VHCG 151
++K I F+ + VSGG A+ + M GG+K + K I + + + G
Sbjct: 116 KDKGILFVGSGVSGGEDGARYGP-SLMPGGNKEAWPHIKAIFQGIAAKVGTGEPCCDWVG 174
Query: 152 DSGNGQVAKLCNNMLLGVTMMGVAEAMNL 180
D G G K+ +N + M + EA +L
Sbjct: 175 DDGAGHFVKMVHNGIEYGDMQLICEAYHL 203
>pdb|1DI1|A Chain A, Crystal Structure Of Aristolochene Synthase From
Penicillium Roqueforti
pdb|1DI1|B Chain B, Crystal Structure Of Aristolochene Synthase From
Penicillium Roqueforti
pdb|1DGP|A Chain A, Aristolochene Synthase Farnesol Complex
pdb|1DGP|B Chain B, Aristolochene Synthase Farnesol Complex
Length = 300
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 15 DVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVL 61
D+ YDK +AS+T KEGA + ++ LA ++ I PA++ VL
Sbjct: 206 DIYSYDKEEEASRTGHKEGAFLCSAVKVLAEESKLGI---PATKRVL 249
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 30.0 bits (66), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTL 29
+GSH LL+NGHDVI+ D ++ +++
Sbjct: 12 IGSHTCVQLLQNGHDVIILDNLCNSKRSV 40
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED
WITH UDP- Glucose
Length = 338
Score = 29.6 bits (65), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTL 29
+GSH LL+NGHDVI+ D ++ +++
Sbjct: 12 IGSHTCVQLLQNGHDVIILDNLCNSKRSV 40
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED
WITH UDP- Galactose
Length = 338
Score = 29.6 bits (65), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTL 29
+GSH LL+NGHDVI+ D ++ +++
Sbjct: 12 IGSHTCVQLLQNGHDVIILDNLCNSKRSV 40
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 29.6 bits (65), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTL 29
+GSH LL+NGHDVI+ D ++ +++
Sbjct: 12 IGSHTCVQLLQNGHDVIILDNLCNSKRSV 40
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 29.6 bits (65), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 1 MGSHMARNLLKNGHDVIVYD 20
+GSH LL+NGHDVI+ D
Sbjct: 12 IGSHTCVQLLQNGHDVIILD 31
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 29.6 bits (65), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 1 MGSHMARNLLKNGHDVIVYD 20
+GSH LL+NGHDVI+ D
Sbjct: 12 IGSHTCVQLLQNGHDVIILD 31
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 29.6 bits (65), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 1 MGSHMARNLLKNGHDVIVYD 20
+GSH LL+NGHDVI+ D
Sbjct: 12 IGSHTCVQLLQNGHDVIILD 31
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 29.6 bits (65), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTL 29
+GSH LL+NGHDVI+ D ++ +++
Sbjct: 12 IGSHTCVQLLQNGHDVIILDNLCNSKRSV 40
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 29.6 bits (65), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 1 MGSHMARNLLKNGHDVIVYD 20
+GSH LL+NGHDVI+ D
Sbjct: 12 IGSHTCVQLLQNGHDVIILD 31
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli,
Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 29.6 bits (65), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTL 29
+GSH LL+NGHDVI+ D ++ +++
Sbjct: 12 IGSHTCVQLLQNGHDVIILDNLCNSKRSV 40
>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid
Dehydrogenase Family Protein From Aeromonas Salmonicida
Subsp. Salmonicida A449
Length = 324
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 39 SLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVID 82
+L+ + + A+ I+S+LPA+++ + S +H KPG I+ +
Sbjct: 187 ALNKMLAQADVIVSVLPATRETHHLFTASR--FEHCKPGAILFN 228
>pdb|3GEM|A Chain A, Crystal Structure Of Short-Chain Dehydrogenase From
Pseudomonas Syringae
pdb|3GEM|B Chain B, Crystal Structure Of Short-Chain Dehydrogenase From
Pseudomonas Syringae
pdb|3GEM|C Chain C, Crystal Structure Of Short-Chain Dehydrogenase From
Pseudomonas Syringae
pdb|3GEM|D Chain D, Crystal Structure Of Short-Chain Dehydrogenase From
Pseudomonas Syringae
Length = 260
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMAL 38
+G H A LL++GH VI+ + AS T ++ +AL
Sbjct: 39 VGLHCALRLLEHGHRVIISYRTEHASVTELRQAGAVAL 76
>pdb|2YFN|A Chain A, Galactosidase Domain Of Alpha-Galactosidase-Sucrose
Kinase, Agask
pdb|2YFO|A Chain A, Galactosidase Domain Of Alpha-Galactosidase-Sucrose
Kinase, Agask, In Complex With Galactose
Length = 720
Score = 27.7 bits (60), Expect = 4.2, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 4 HMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASG 46
HM R +L N + +D D LAKE A++ + + + G
Sbjct: 326 HMQRPVLINSWEAAYFDFTGDTIVDLAKEAASLGIDMVVMDDG 368
>pdb|1KA9|F Chain F, Imidazole Glycerol Phosphate Synthase
Length = 252
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 78 VIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKA 136
++ +D S + L +AR + F+ V GG ++ ++A + G DK S+ A
Sbjct: 48 LVFLDISATHEERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSA 106
>pdb|3KLJ|A Chain A, Crystal Structure Of Nadh:rubredoxin Oxidoreductase From
Clostridium Acetobutylicum
Length = 385
Score = 26.6 bits (57), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 138 PILKCMGRNIVHCGDSGNGQVAKL 161
PILK G +I+ CGD N + +K+
Sbjct: 305 PILKVSGISIISCGDIENNKPSKV 328
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,058,832
Number of Sequences: 62578
Number of extensions: 187551
Number of successful extensions: 567
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 517
Number of HSP's gapped (non-prelim): 50
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)