Query psy755
Match_columns 183
No_of_seqs 130 out of 1601
Neff 9.8
Searched_HMMs 46136
Date Fri Aug 16 21:14:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy755.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/755hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2084 MmsB 3-hydroxyisobutyr 100.0 1.7E-39 3.7E-44 245.2 21.1 183 1-183 11-194 (286)
2 KOG0409|consensus 100.0 1.5E-35 3.2E-40 220.7 19.6 183 1-183 46-229 (327)
3 PRK09287 6-phosphogluconate de 100.0 1.7E-35 3.7E-40 238.4 20.3 178 1-182 1-193 (459)
4 PLN02350 phosphogluconate dehy 100.0 3.5E-35 7.7E-40 237.7 20.6 179 1-183 17-211 (493)
5 TIGR01692 HIBADH 3-hydroxyisob 100.0 1.5E-34 3.2E-39 222.6 21.8 183 1-183 7-189 (288)
6 PRK15059 tartronate semialdehy 100.0 4.9E-34 1.1E-38 219.6 21.7 182 1-183 11-192 (292)
7 PRK15461 NADH-dependent gamma- 100.0 1.6E-33 3.5E-38 217.4 21.7 183 1-183 12-194 (296)
8 PTZ00142 6-phosphogluconate de 100.0 9.4E-34 2E-38 229.1 20.4 178 1-182 12-204 (470)
9 PRK12490 6-phosphogluconate de 100.0 7.8E-33 1.7E-37 214.0 20.7 179 1-183 11-195 (299)
10 TIGR00873 gnd 6-phosphoglucona 100.0 6.1E-33 1.3E-37 224.4 18.8 178 1-182 10-201 (467)
11 TIGR01505 tartro_sem_red 2-hyd 100.0 1.6E-31 3.4E-36 206.2 21.8 183 1-183 10-192 (291)
12 PRK09599 6-phosphogluconate de 100.0 1.1E-31 2.3E-36 207.9 20.2 179 1-183 11-196 (301)
13 PRK11559 garR tartronate semia 100.0 2.2E-31 4.7E-36 205.9 21.8 183 1-183 13-195 (296)
14 PLN02858 fructose-bisphosphate 100.0 1.1E-31 2.3E-36 238.8 21.0 183 1-183 15-200 (1378)
15 COG1023 Gnd Predicted 6-phosph 100.0 5.9E-31 1.3E-35 190.3 17.7 178 1-182 11-194 (300)
16 TIGR00872 gnd_rel 6-phosphoglu 100.0 1.1E-30 2.4E-35 201.8 19.8 178 1-183 11-194 (298)
17 PF03446 NAD_binding_2: NAD bi 100.0 1.7E-31 3.8E-36 189.5 13.0 151 1-152 12-163 (163)
18 PLN02858 fructose-bisphosphate 100.0 5.1E-30 1.1E-34 228.1 20.5 183 1-183 335-520 (1378)
19 COG0362 Gnd 6-phosphogluconate 100.0 1.5E-28 3.2E-33 189.1 12.5 178 1-182 14-205 (473)
20 KOG2653|consensus 99.9 9.1E-26 2E-30 171.5 11.0 178 1-182 17-209 (487)
21 TIGR03026 NDP-sugDHase nucleot 99.9 4.2E-25 9.2E-30 177.7 14.8 180 1-183 11-231 (411)
22 PRK11064 wecC UDP-N-acetyl-D-m 99.9 3.5E-23 7.7E-28 166.4 18.3 180 1-183 14-235 (415)
23 PRK12557 H(2)-dependent methyl 99.9 3.2E-23 7E-28 162.1 16.6 174 2-183 32-224 (342)
24 PRK15182 Vi polysaccharide bio 99.9 2.4E-22 5.2E-27 161.6 14.1 181 1-183 17-231 (425)
25 PRK15057 UDP-glucose 6-dehydro 99.9 4.7E-22 1E-26 158.3 15.5 171 1-183 11-220 (388)
26 PRK08507 prephenate dehydrogen 99.8 1.8E-18 4E-23 132.5 18.1 168 1-178 11-193 (275)
27 PRK07417 arogenate dehydrogena 99.8 2.3E-19 5E-24 137.7 12.3 167 1-175 11-190 (279)
28 PRK00094 gpsA NAD(P)H-dependen 99.8 6.4E-19 1.4E-23 137.9 11.6 179 1-183 12-227 (325)
29 PRK11199 tyrA bifunctional cho 99.8 2.1E-18 4.6E-23 137.1 14.4 156 1-180 110-267 (374)
30 PRK06129 3-hydroxyacyl-CoA deh 99.8 4.5E-18 9.7E-23 132.3 15.2 168 1-183 13-207 (308)
31 PRK14618 NAD(P)H-dependent gly 99.8 2E-18 4.2E-23 135.4 11.3 175 1-183 15-226 (328)
32 TIGR01724 hmd_rel H2-forming N 99.8 1.9E-17 4.1E-22 126.1 16.0 147 2-151 32-193 (341)
33 PRK09260 3-hydroxybutyryl-CoA 99.8 4.8E-18 1E-22 131.0 13.0 166 1-177 12-206 (288)
34 PRK08655 prephenate dehydrogen 99.8 2.7E-17 5.8E-22 133.1 16.6 164 1-169 12-180 (437)
35 PF02153 PDH: Prephenate dehyd 99.8 3.3E-17 7.1E-22 124.4 15.0 166 5-175 1-181 (258)
36 COG0287 TyrA Prephenate dehydr 99.8 9E-17 2E-21 122.4 16.3 171 1-176 14-195 (279)
37 PRK07531 bifunctional 3-hydrox 99.8 2.1E-17 4.6E-22 135.8 13.8 166 1-182 15-204 (495)
38 PRK08268 3-hydroxy-acyl-CoA de 99.7 2.2E-17 4.7E-22 135.8 13.0 158 1-182 18-209 (507)
39 PRK07819 3-hydroxybutyryl-CoA 99.7 5.1E-17 1.1E-21 125.0 12.2 168 1-178 16-212 (286)
40 PRK14619 NAD(P)H-dependent gly 99.7 4E-17 8.6E-22 127.0 10.9 163 1-183 15-203 (308)
41 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.7 1.5E-16 3.3E-21 130.5 14.3 159 1-182 16-207 (503)
42 PRK08269 3-hydroxybutyryl-CoA 99.7 1E-16 2.3E-21 124.6 12.4 162 1-182 1-202 (314)
43 COG0677 WecC UDP-N-acetyl-D-ma 99.7 4.9E-16 1.1E-20 120.7 15.4 182 1-183 20-238 (436)
44 PRK06545 prephenate dehydrogen 99.7 6.5E-16 1.4E-20 122.5 16.3 168 1-173 11-195 (359)
45 PRK07066 3-hydroxybutyryl-CoA 99.7 2.1E-16 4.5E-21 122.8 11.6 167 1-179 18-211 (321)
46 PLN02688 pyrroline-5-carboxyla 99.7 8.7E-16 1.9E-20 117.1 14.8 140 1-151 11-158 (266)
47 PRK07502 cyclohexadienyl dehyd 99.7 2.9E-15 6.4E-20 116.5 16.4 167 1-172 17-199 (307)
48 PLN02353 probable UDP-glucose 99.7 3.2E-15 6.9E-20 121.7 17.0 180 1-183 12-239 (473)
49 PRK07530 3-hydroxybutyryl-CoA 99.7 4.3E-16 9.4E-21 120.3 11.3 164 1-176 15-207 (292)
50 PLN02256 arogenate dehydrogena 99.7 3.6E-15 7.8E-20 115.4 16.1 163 1-169 47-221 (304)
51 PRK08293 3-hydroxybutyryl-CoA 99.7 8.5E-16 1.8E-20 118.4 12.5 169 1-178 14-211 (287)
52 COG1004 Ugd Predicted UDP-gluc 99.7 5.3E-15 1.2E-19 115.3 16.3 178 2-183 12-229 (414)
53 PLN02545 3-hydroxybutyryl-CoA 99.7 1.3E-15 2.8E-20 117.9 11.9 152 1-163 15-194 (295)
54 PRK08818 prephenate dehydrogen 99.7 6.5E-15 1.4E-19 116.2 15.4 153 1-172 16-175 (370)
55 COG0240 GpsA Glycerol-3-phosph 99.7 9.2E-15 2E-19 112.3 15.4 175 1-181 12-205 (329)
56 PRK06130 3-hydroxybutyryl-CoA 99.6 4.6E-15 9.9E-20 115.6 13.4 163 1-182 15-203 (311)
57 COG2085 Predicted dinucleotide 99.6 4.7E-15 1E-19 107.0 11.2 165 1-170 12-198 (211)
58 PRK06035 3-hydroxyacyl-CoA deh 99.6 4.9E-15 1.1E-19 114.4 11.7 165 1-177 14-210 (291)
59 PRK07679 pyrroline-5-carboxyla 99.6 1.5E-14 3.2E-19 111.1 13.2 138 1-148 14-161 (279)
60 TIGR01915 npdG NADPH-dependent 99.6 1.5E-14 3.2E-19 107.4 11.8 162 1-169 12-206 (219)
61 PRK14806 bifunctional cyclohex 99.6 1.3E-13 2.8E-18 118.7 17.1 163 1-167 14-192 (735)
62 PRK07680 late competence prote 99.6 1.3E-13 2.8E-18 105.6 14.8 141 1-152 11-159 (273)
63 PLN02712 arogenate dehydrogena 99.6 1.4E-13 3.1E-18 116.4 15.9 162 1-168 63-236 (667)
64 PRK05808 3-hydroxybutyryl-CoA 99.5 9.8E-14 2.1E-18 106.8 11.8 166 1-178 14-208 (282)
65 PLN02712 arogenate dehydrogena 99.5 3.3E-13 7.2E-18 114.2 15.3 160 1-167 380-552 (667)
66 PRK12491 pyrroline-5-carboxyla 99.5 7.6E-13 1.7E-17 101.1 15.8 139 1-147 13-158 (272)
67 PRK08229 2-dehydropantoate 2-r 99.5 1.5E-13 3.2E-18 108.4 12.0 171 1-183 13-228 (341)
68 PF02737 3HCDH_N: 3-hydroxyacy 99.5 1.3E-14 2.8E-19 104.4 4.8 140 1-151 10-178 (180)
69 COG1250 FadB 3-hydroxyacyl-CoA 99.5 2.7E-13 5.9E-18 104.1 11.5 164 1-177 14-207 (307)
70 PRK11880 pyrroline-5-carboxyla 99.5 3.8E-12 8.2E-17 97.2 17.0 140 1-151 13-158 (267)
71 PRK11730 fadB multifunctional 99.5 5.1E-13 1.1E-17 114.2 11.6 165 1-177 324-517 (715)
72 TIGR03376 glycerol3P_DH glycer 99.5 4E-12 8.7E-17 99.8 14.7 175 1-181 10-221 (342)
73 PTZ00345 glycerol-3-phosphate 99.5 3E-12 6.5E-17 101.2 14.1 174 1-181 22-230 (365)
74 PRK12439 NAD(P)H-dependent gly 99.4 3.7E-12 7.9E-17 100.5 14.4 171 1-180 18-210 (341)
75 TIGR02437 FadB fatty oxidation 99.4 8.4E-13 1.8E-17 112.8 11.4 165 1-177 324-517 (714)
76 PRK06476 pyrroline-5-carboxyla 99.4 4.5E-12 9.8E-17 96.3 13.9 134 1-149 11-149 (258)
77 TIGR02441 fa_ox_alpha_mit fatt 99.4 1.3E-12 2.8E-17 111.9 10.2 165 1-177 346-539 (737)
78 TIGR02440 FadJ fatty oxidation 99.4 2.7E-12 5.8E-17 109.6 11.7 165 1-177 315-509 (699)
79 PRK11154 fadJ multifunctional 99.4 4.4E-12 9.6E-17 108.5 11.8 165 1-177 320-514 (708)
80 PRK14620 NAD(P)H-dependent gly 99.4 1.8E-11 3.8E-16 96.1 13.8 162 1-166 11-193 (326)
81 COG0345 ProC Pyrroline-5-carbo 99.4 7.1E-11 1.5E-15 89.2 15.2 138 1-148 12-156 (266)
82 PF01210 NAD_Gly3P_dh_N: NAD-d 99.4 3.5E-12 7.5E-17 89.9 7.6 127 1-131 10-155 (157)
83 PF10727 Rossmann-like: Rossma 99.3 5.4E-12 1.2E-16 85.3 7.2 99 1-106 21-123 (127)
84 PRK07634 pyrroline-5-carboxyla 99.3 9.2E-11 2E-15 88.4 14.0 139 1-149 15-162 (245)
85 PRK06928 pyrroline-5-carboxyla 99.3 1.1E-10 2.5E-15 89.5 13.6 138 1-147 12-158 (277)
86 PF03721 UDPG_MGDP_dh_N: UDP-g 99.3 5.7E-11 1.2E-15 85.8 11.2 136 1-139 11-185 (185)
87 PF03807 F420_oxidored: NADP o 99.3 5.5E-12 1.2E-16 81.6 5.1 80 1-85 10-95 (96)
88 TIGR00112 proC pyrroline-5-car 99.3 4.3E-10 9.2E-15 84.9 14.9 127 13-147 9-138 (245)
89 PRK05479 ketol-acid reductoiso 99.2 1.6E-09 3.4E-14 84.5 14.8 139 1-147 28-176 (330)
90 PRK12921 2-dehydropantoate 2-r 99.2 6.2E-10 1.3E-14 86.5 12.6 159 1-167 11-192 (305)
91 PTZ00431 pyrroline carboxylate 99.2 1.5E-09 3.3E-14 82.6 14.1 133 1-148 14-152 (260)
92 KOG2304|consensus 99.1 3.9E-11 8.4E-16 87.2 3.6 144 1-152 22-197 (298)
93 PLN03139 formate dehydrogenase 99.1 1.9E-09 4.2E-14 85.9 13.3 101 1-103 210-310 (386)
94 PRK06522 2-dehydropantoate 2-r 99.1 1.3E-09 2.8E-14 84.6 11.5 161 1-167 11-189 (304)
95 PRK07574 formate dehydrogenase 99.1 8.8E-10 1.9E-14 87.8 10.7 101 1-103 203-303 (385)
96 COG4007 Predicted dehydrogenas 99.1 7.9E-09 1.7E-13 76.6 14.4 172 2-181 33-223 (340)
97 cd01065 NAD_bind_Shikimate_DH 99.1 4.7E-10 1E-14 78.7 6.5 101 1-107 30-137 (155)
98 PRK06444 prephenate dehydrogen 99.0 1.2E-08 2.6E-13 74.2 12.0 122 1-169 12-138 (197)
99 PRK12480 D-lactate dehydrogena 99.0 3.8E-09 8.3E-14 82.9 10.1 96 1-102 157-252 (330)
100 PRK13243 glyoxylate reductase; 99.0 2.9E-09 6.2E-14 83.8 9.4 97 1-101 161-257 (333)
101 PF02826 2-Hacid_dh_C: D-isome 99.0 1.1E-09 2.3E-14 78.8 5.7 99 1-102 47-145 (178)
102 TIGR00465 ilvC ketol-acid redu 98.9 2.6E-08 5.5E-13 77.6 12.9 137 1-146 14-161 (314)
103 PRK06436 glycerate dehydrogena 98.9 4.5E-09 9.8E-14 81.5 8.7 95 1-103 133-228 (303)
104 PRK15469 ghrA bifunctional gly 98.9 9.7E-09 2.1E-13 80.0 8.0 99 1-103 147-245 (312)
105 TIGR01327 PGDH D-3-phosphoglyc 98.9 1.4E-08 3.1E-13 84.4 9.1 100 1-103 149-248 (525)
106 PRK08605 D-lactate dehydrogena 98.8 1.4E-08 3E-13 79.9 8.2 98 1-103 157-255 (332)
107 TIGR00745 apbA_panE 2-dehydrop 98.8 1.2E-07 2.6E-12 73.2 12.1 159 1-166 2-181 (293)
108 COG1052 LdhA Lactate dehydroge 98.8 3E-08 6.4E-13 77.5 8.6 98 1-102 157-254 (324)
109 PRK13403 ketol-acid reductoiso 98.8 2.1E-08 4.6E-13 77.5 7.6 78 1-82 27-104 (335)
110 PRK13581 D-3-phosphoglycerate 98.8 2.9E-08 6.2E-13 82.6 9.0 98 1-102 151-248 (526)
111 KOG2305|consensus 98.8 3.2E-08 6.9E-13 72.3 7.5 164 1-169 14-202 (313)
112 COG0111 SerA Phosphoglycerate 98.7 4.3E-08 9.4E-13 76.6 7.4 98 1-101 153-250 (324)
113 PLN02928 oxidoreductase family 98.7 5.6E-08 1.2E-12 76.9 7.8 98 1-101 170-279 (347)
114 PRK06249 2-dehydropantoate 2-r 98.7 2.3E-07 4.9E-12 72.5 10.8 160 1-167 16-201 (313)
115 TIGR02853 spore_dpaA dipicolin 98.7 1.5E-07 3.2E-12 72.6 9.4 99 1-109 162-262 (287)
116 PRK11861 bifunctional prephena 98.7 2.8E-07 6.1E-12 79.0 11.6 123 50-176 1-135 (673)
117 PRK08410 2-hydroxyacid dehydro 98.7 2.2E-07 4.9E-12 72.5 10.1 96 1-103 156-251 (311)
118 PF07991 IlvN: Acetohydroxy ac 98.7 6.5E-08 1.4E-12 67.4 6.3 79 2-84 16-95 (165)
119 PRK15409 bifunctional glyoxyla 98.6 1.5E-07 3.3E-12 73.7 8.4 98 1-102 156-254 (323)
120 PRK11790 D-3-phosphoglycerate 98.6 1.6E-07 3.4E-12 75.9 8.6 97 1-103 162-258 (409)
121 PRK00257 erythronate-4-phospha 98.6 2.1E-07 4.5E-12 74.3 8.2 94 1-101 127-224 (381)
122 PRK06487 glycerate dehydrogena 98.6 5.5E-07 1.2E-11 70.5 9.7 93 1-102 159-251 (317)
123 PRK00961 H(2)-dependent methyl 98.5 2.1E-06 4.6E-11 64.5 11.0 111 33-151 128-242 (342)
124 PRK06932 glycerate dehydrogena 98.5 7.2E-07 1.6E-11 69.7 8.5 95 1-103 158-252 (314)
125 KOG0069|consensus 98.5 8E-07 1.7E-11 69.2 8.4 97 1-100 173-269 (336)
126 PRK14194 bifunctional 5,10-met 98.5 4.5E-07 9.8E-12 69.8 6.7 64 1-87 171-234 (301)
127 KOG2380|consensus 98.5 4.4E-06 9.5E-11 64.7 11.9 145 1-151 63-219 (480)
128 PRK08306 dipicolinate synthase 98.4 1.4E-06 3.1E-11 67.5 8.9 98 1-108 163-262 (296)
129 PLN02306 hydroxypyruvate reduc 98.4 1.8E-06 4E-11 69.1 9.6 99 1-101 176-289 (386)
130 PRK15438 erythronate-4-phospha 98.4 1.1E-06 2.3E-11 70.1 8.2 94 1-101 127-224 (378)
131 PRK14188 bifunctional 5,10-met 98.4 7.3E-07 1.6E-11 68.7 7.1 63 1-87 170-233 (296)
132 COG1893 ApbA Ketopantoate redu 98.4 4.6E-06 9.9E-11 65.0 10.8 161 1-168 11-192 (307)
133 PRK13302 putative L-aspartate 98.4 2.9E-06 6.2E-11 65.0 9.2 98 1-105 17-119 (271)
134 PRK05708 2-dehydropantoate 2-r 98.4 2.4E-06 5.2E-11 66.6 8.7 160 1-167 13-191 (305)
135 TIGR00507 aroE shikimate 5-deh 98.4 1.3E-06 2.8E-11 67.0 6.9 101 1-107 128-235 (270)
136 cd01075 NAD_bind_Leu_Phe_Val_D 98.3 3.3E-06 7E-11 61.9 8.3 99 1-109 39-139 (200)
137 PRK06141 ornithine cyclodeamin 98.3 1.1E-06 2.4E-11 68.8 5.6 98 1-107 136-241 (314)
138 TIGR01723 hmd_TIGR 5,10-methen 98.3 1.6E-05 3.6E-10 59.9 10.6 111 33-151 126-240 (340)
139 KOG2666|consensus 98.2 6E-05 1.3E-09 58.1 13.2 168 15-183 28-239 (481)
140 COG1748 LYS9 Saccharopine dehy 98.2 1.4E-05 3E-10 63.8 9.3 107 1-115 12-130 (389)
141 KOG2711|consensus 98.2 3.4E-05 7.4E-10 59.8 10.5 175 1-181 32-243 (372)
142 PRK13304 L-aspartate dehydroge 98.1 2.1E-05 4.5E-10 60.2 8.9 97 1-104 12-115 (265)
143 PF02558 ApbA: Ketopantoate re 98.1 6.8E-06 1.5E-10 57.3 4.6 92 1-98 9-114 (151)
144 PRK14179 bifunctional 5,10-met 98.0 1.3E-05 2.9E-10 61.3 6.4 64 1-87 170-233 (284)
145 PF00670 AdoHcyase_NAD: S-aden 98.0 3E-05 6.5E-10 54.4 6.3 82 2-90 35-116 (162)
146 TIGR00936 ahcY adenosylhomocys 98.0 0.0001 2.2E-09 59.4 10.1 92 1-99 206-298 (406)
147 PF03720 UDPG_MGDP_dh_C: UDP-g 97.9 2.4E-05 5.2E-10 51.4 5.3 81 3-86 20-103 (106)
148 KOG3124|consensus 97.9 0.00037 8.1E-09 52.2 11.3 137 1-145 11-154 (267)
149 TIGR02371 ala_DH_arch alanine 97.9 3.9E-05 8.4E-10 60.4 6.1 72 11-90 151-228 (325)
150 PF01488 Shikimate_DH: Shikima 97.8 7.3E-06 1.6E-10 56.2 1.7 80 1-85 23-110 (135)
151 PTZ00075 Adenosylhomocysteinas 97.8 7.9E-05 1.7E-09 60.9 7.3 80 1-87 265-344 (476)
152 cd05213 NAD_bind_Glutamyl_tRNA 97.8 4.6E-05 9.9E-10 59.6 5.7 81 1-85 189-274 (311)
153 PRK07340 ornithine cyclodeamin 97.8 0.00012 2.5E-09 57.1 7.9 97 1-107 136-239 (304)
154 PRK09310 aroDE bifunctional 3- 97.8 0.0001 2.2E-09 60.9 8.0 92 1-107 343-437 (477)
155 smart00859 Semialdhyde_dh Semi 97.8 5.5E-05 1.2E-09 50.8 5.2 83 2-88 12-103 (122)
156 PRK05476 S-adenosyl-L-homocyst 97.8 0.00018 3.9E-09 58.4 8.8 81 1-88 223-303 (425)
157 PRK06823 ornithine cyclodeamin 97.7 0.00012 2.6E-09 57.3 6.7 86 14-107 154-245 (315)
158 PLN02494 adenosylhomocysteinas 97.7 0.00027 5.9E-09 57.8 8.7 90 1-97 265-355 (477)
159 PRK06407 ornithine cyclodeamin 97.7 0.00012 2.5E-09 57.1 6.4 85 15-107 144-235 (301)
160 KOG0068|consensus 97.7 0.00022 4.7E-09 55.5 7.6 96 1-100 157-252 (406)
161 COG5495 Uncharacterized conser 97.7 0.0013 2.9E-08 48.6 11.2 140 5-153 21-171 (289)
162 COG0059 IlvC Ketol-acid reduct 97.7 0.00019 4.2E-09 55.0 7.1 76 2-81 30-106 (338)
163 cd00401 AdoHcyase S-adenosyl-L 97.7 0.00029 6.4E-09 57.0 8.4 79 1-86 213-291 (413)
164 PRK00258 aroE shikimate 5-dehy 97.7 0.00014 3.1E-09 56.0 6.3 103 1-107 134-242 (278)
165 COG2423 Predicted ornithine cy 97.6 0.00015 3.2E-09 56.9 5.8 86 14-107 156-248 (330)
166 PRK08618 ornithine cyclodeamin 97.6 0.00026 5.5E-09 55.8 7.2 97 2-107 139-244 (325)
167 cd01078 NAD_bind_H4MPT_DH NADP 97.6 0.00016 3.4E-09 52.7 5.3 84 1-90 40-135 (194)
168 PRK12549 shikimate 5-dehydroge 97.6 0.00023 5E-09 54.9 6.5 101 1-107 138-248 (284)
169 TIGR02992 ectoine_eutC ectoine 97.6 0.00021 4.5E-09 56.3 6.0 80 2-89 141-229 (326)
170 PF01408 GFO_IDH_MocA: Oxidore 97.5 0.00089 1.9E-08 44.5 8.3 97 2-105 12-116 (120)
171 TIGR00518 alaDH alanine dehydr 97.5 0.00016 3.5E-09 57.9 4.5 87 1-89 178-272 (370)
172 PRK00045 hemA glutamyl-tRNA re 97.5 0.00011 2.4E-09 59.9 3.6 81 1-85 193-281 (423)
173 PLN00203 glutamyl-tRNA reducta 97.5 0.00018 3.8E-09 60.0 4.7 59 1-59 277-342 (519)
174 PRK08291 ectoine utilization p 97.4 0.0004 8.7E-09 54.8 6.1 81 2-90 144-233 (330)
175 PF02423 OCD_Mu_crystall: Orni 97.4 0.0002 4.3E-09 56.1 3.8 70 15-90 155-230 (313)
176 TIGR01035 hemA glutamyl-tRNA r 97.4 0.00016 3.5E-09 58.8 3.4 81 1-85 191-278 (417)
177 TIGR01921 DAP-DH diaminopimela 97.4 0.0052 1.1E-07 48.2 11.4 76 1-85 14-92 (324)
178 PRK06046 alanine dehydrogenase 97.3 0.00052 1.1E-08 54.0 6.0 96 2-107 141-245 (326)
179 PRK04148 hypothetical protein; 97.3 0.0026 5.6E-08 43.4 8.4 83 2-88 28-115 (134)
180 PF02254 TrkA_N: TrkA-N domain 97.3 0.0027 5.8E-08 42.0 8.5 97 1-106 9-113 (116)
181 PF03435 Saccharop_dh: Sacchar 97.3 0.00065 1.4E-08 54.7 6.2 107 1-115 9-129 (386)
182 PRK05225 ketol-acid reductoiso 97.3 0.00042 9E-09 56.3 4.7 75 2-81 48-128 (487)
183 PRK07589 ornithine cyclodeamin 97.3 0.00052 1.1E-08 54.4 5.1 72 14-91 155-232 (346)
184 PRK10669 putative cation:proto 97.2 0.0026 5.5E-08 53.8 9.3 64 1-64 428-499 (558)
185 cd01080 NAD_bind_m-THF_DH_Cycl 97.2 0.00077 1.7E-08 48.0 5.3 63 2-87 57-119 (168)
186 TIGR03855 NAD_NadX aspartate d 97.2 0.0032 6.8E-08 47.1 8.6 85 16-107 5-94 (229)
187 cd05212 NAD_bind_m-THF_DH_Cycl 97.2 0.0024 5.2E-08 44.0 7.0 66 13-87 28-103 (140)
188 PRK13940 glutamyl-tRNA reducta 97.2 0.00055 1.2E-08 55.6 4.4 78 1-85 192-274 (414)
189 PRK03659 glutathione-regulated 97.1 0.0031 6.8E-08 53.8 8.8 98 1-107 411-516 (601)
190 PRK14175 bifunctional 5,10-met 97.1 0.0015 3.3E-08 50.3 6.2 64 1-87 170-233 (286)
191 COG0373 HemA Glutamyl-tRNA red 97.1 0.00067 1.4E-08 54.7 4.4 81 1-85 189-275 (414)
192 TIGR01809 Shik-DH-AROM shikima 97.1 0.0027 5.9E-08 49.0 7.5 103 1-107 136-252 (282)
193 PF02882 THF_DHG_CYH_C: Tetrah 97.1 0.0023 5E-08 45.1 6.3 42 38-88 71-112 (160)
194 TIGR01761 thiaz-red thiazoliny 97.1 0.009 2E-07 47.4 10.2 100 1-107 13-120 (343)
195 KOG1683|consensus 97.0 0.00099 2.2E-08 52.4 4.3 145 1-152 1-170 (380)
196 PRK12548 shikimate 5-dehydroge 97.0 0.0038 8.3E-08 48.3 7.4 102 1-107 137-257 (289)
197 cd01079 NAD_bind_m-THF_DH NAD 97.0 0.0028 6.1E-08 45.9 6.0 78 1-87 74-159 (197)
198 TIGR01763 MalateDH_bact malate 96.9 0.0059 1.3E-07 47.7 8.1 81 1-86 12-120 (305)
199 COG1712 Predicted dinucleotide 96.9 0.021 4.6E-07 42.3 10.1 95 2-104 12-113 (255)
200 PRK00048 dihydrodipicolinate r 96.9 0.0069 1.5E-07 46.1 8.0 100 1-109 13-115 (257)
201 PRK03562 glutathione-regulated 96.8 0.01 2.2E-07 50.8 9.4 102 1-111 411-520 (621)
202 PF13380 CoA_binding_2: CoA bi 96.8 0.0048 1E-07 41.1 6.0 92 2-107 16-107 (116)
203 PRK14189 bifunctional 5,10-met 96.8 0.0045 9.8E-08 47.7 6.4 63 2-87 171-233 (285)
204 PLN02819 lysine-ketoglutarate 96.7 0.0089 1.9E-07 53.7 8.5 106 1-114 580-709 (1042)
205 PRK10792 bifunctional 5,10-met 96.7 0.0063 1.4E-07 46.8 6.5 62 2-86 172-233 (285)
206 PF01113 DapB_N: Dihydrodipico 96.7 0.0083 1.8E-07 40.4 6.4 84 1-91 12-105 (124)
207 COG0673 MviM Predicted dehydro 96.7 0.025 5.4E-07 44.5 10.1 95 5-106 19-122 (342)
208 PRK06223 malate dehydrogenase; 96.6 0.0098 2.1E-07 46.4 7.4 54 1-55 13-79 (307)
209 PRK14027 quinate/shikimate deh 96.6 0.0085 1.8E-07 46.3 6.8 101 2-107 139-250 (283)
210 COG0569 TrkA K+ transport syst 96.6 0.021 4.5E-07 42.7 8.7 62 1-63 11-82 (225)
211 cd00650 LDH_MDH_like NAD-depen 96.6 0.0071 1.5E-07 46.2 6.3 54 1-54 10-78 (263)
212 PRK06199 ornithine cyclodeamin 96.6 0.003 6.4E-08 50.8 4.4 66 15-85 183-260 (379)
213 PLN02353 probable UDP-glucose 96.6 0.02 4.4E-07 47.4 9.1 96 3-107 347-464 (473)
214 PRK14177 bifunctional 5,10-met 96.6 0.009 1.9E-07 46.0 6.5 41 38-87 194-234 (284)
215 PF03447 NAD_binding_3: Homose 96.6 0.0068 1.5E-07 40.3 5.2 98 1-105 5-114 (117)
216 PRK14169 bifunctional 5,10-met 96.6 0.008 1.7E-07 46.2 6.1 41 38-87 191-231 (282)
217 PRK14170 bifunctional 5,10-met 96.5 0.0096 2.1E-07 45.8 6.5 41 38-87 192-232 (284)
218 COG0169 AroE Shikimate 5-dehyd 96.5 0.0082 1.8E-07 46.3 6.2 100 2-107 138-247 (283)
219 PRK14186 bifunctional 5,10-met 96.5 0.0089 1.9E-07 46.3 6.3 41 38-87 193-233 (297)
220 PRK00683 murD UDP-N-acetylmura 96.5 0.039 8.4E-07 45.0 10.3 125 1-156 14-140 (418)
221 PRK14173 bifunctional 5,10-met 96.5 0.0097 2.1E-07 45.9 6.3 41 38-87 190-230 (287)
222 cd01339 LDH-like_MDH L-lactate 96.5 0.014 2.9E-07 45.5 7.3 54 1-55 9-75 (300)
223 PRK08306 dipicolinate synthase 96.5 0.0067 1.5E-07 47.2 5.5 96 4-107 16-119 (296)
224 PLN02516 methylenetetrahydrofo 96.5 0.01 2.2E-07 46.0 6.4 41 38-87 202-242 (299)
225 PRK14178 bifunctional 5,10-met 96.5 0.0071 1.5E-07 46.4 5.4 66 13-87 152-227 (279)
226 TIGR00561 pntA NAD(P) transhyd 96.5 0.0091 2E-07 49.7 6.4 80 2-87 176-287 (511)
227 PRK14172 bifunctional 5,10-met 96.4 0.01 2.2E-07 45.5 6.1 40 38-86 193-232 (278)
228 PRK14171 bifunctional 5,10-met 96.4 0.01 2.2E-07 45.8 6.0 40 38-86 194-233 (288)
229 PRK14190 bifunctional 5,10-met 96.4 0.0094 2E-07 45.9 5.9 41 38-87 193-233 (284)
230 cd05297 GH4_alpha_glucosidase_ 96.4 0.014 3E-07 47.7 7.2 47 10-56 26-84 (423)
231 PRK14180 bifunctional 5,10-met 96.4 0.011 2.3E-07 45.5 6.1 41 38-87 193-233 (282)
232 PRK14176 bifunctional 5,10-met 96.4 0.011 2.4E-07 45.5 6.1 40 38-86 199-238 (287)
233 PRK14166 bifunctional 5,10-met 96.4 0.011 2.5E-07 45.4 6.2 41 38-87 192-232 (282)
234 PF01118 Semialdhyde_dh: Semia 96.4 0.0035 7.6E-08 42.0 3.1 80 1-87 11-100 (121)
235 PRK14187 bifunctional 5,10-met 96.4 0.012 2.7E-07 45.4 6.2 41 38-87 195-235 (294)
236 KOG3007|consensus 96.3 0.008 1.7E-07 45.6 4.9 84 15-107 166-259 (333)
237 PRK09496 trkA potassium transp 96.3 0.02 4.3E-07 47.0 7.6 58 1-58 11-77 (453)
238 PRK14193 bifunctional 5,10-met 96.3 0.014 3.1E-07 44.9 6.3 41 38-87 195-235 (284)
239 TIGR00036 dapB dihydrodipicoli 96.3 0.033 7.2E-07 42.6 8.2 105 1-112 13-128 (266)
240 PRK14192 bifunctional 5,10-met 96.3 0.011 2.4E-07 45.7 5.5 62 2-86 172-233 (283)
241 PRK14182 bifunctional 5,10-met 96.3 0.016 3.4E-07 44.6 6.2 41 38-87 192-232 (282)
242 PLN02616 tetrahydrofolate dehy 96.2 0.015 3.2E-07 46.2 6.1 40 38-86 266-305 (364)
243 COG4074 Mth H2-forming N5,N10- 96.2 0.094 2E-06 38.8 9.8 104 33-143 126-232 (343)
244 PRK14183 bifunctional 5,10-met 96.2 0.016 3.6E-07 44.5 6.1 41 38-87 192-232 (281)
245 PRK12550 shikimate 5-dehydroge 96.2 0.029 6.3E-07 43.1 7.4 100 2-107 134-237 (272)
246 cd05311 NAD_bind_2_malic_enz N 96.2 0.032 6.9E-07 41.7 7.5 97 1-107 36-149 (226)
247 cd05291 HicDH_like L-2-hydroxy 96.2 0.0099 2.2E-07 46.4 4.9 57 1-57 11-79 (306)
248 PRK14191 bifunctional 5,10-met 96.2 0.012 2.7E-07 45.3 5.3 40 39-87 193-232 (285)
249 PF13460 NAD_binding_10: NADH( 96.2 0.013 2.8E-07 41.8 5.2 54 1-56 10-70 (183)
250 PLN02897 tetrahydrofolate dehy 96.2 0.019 4E-07 45.3 6.3 40 38-86 249-288 (345)
251 PRK13303 L-aspartate dehydroge 96.2 0.041 8.9E-07 42.1 8.1 106 1-113 12-125 (265)
252 PRK14181 bifunctional 5,10-met 96.1 0.022 4.7E-07 44.0 6.2 41 38-87 192-232 (287)
253 PF01262 AlaDh_PNT_C: Alanine 96.0 0.011 2.4E-07 42.0 4.3 83 2-86 32-141 (168)
254 COG0002 ArgC Acetylglutamate s 96.0 0.029 6.3E-07 44.2 6.7 82 2-90 15-107 (349)
255 cd05191 NAD_bind_amino_acid_DH 96.0 0.02 4.2E-07 35.9 4.8 52 1-84 34-86 (86)
256 PTZ00117 malate dehydrogenase; 95.9 0.05 1.1E-06 42.8 7.6 53 1-54 16-81 (319)
257 PRK12749 quinate/shikimate deh 95.8 0.053 1.1E-06 42.1 7.3 101 2-107 136-254 (288)
258 TIGR01850 argC N-acetyl-gamma- 95.8 0.028 6E-07 44.8 5.9 82 1-89 12-104 (346)
259 PRK00436 argC N-acetyl-gamma-g 95.8 0.029 6.2E-07 44.6 5.9 81 1-89 14-104 (343)
260 COG0190 FolD 5,10-methylene-te 95.8 0.036 7.8E-07 42.5 6.1 41 38-87 191-231 (283)
261 COG1004 Ugd Predicted UDP-gluc 95.8 0.034 7.3E-07 44.6 6.2 75 4-86 334-410 (414)
262 PRK14185 bifunctional 5,10-met 95.7 0.037 7.9E-07 42.9 6.2 41 38-87 196-236 (293)
263 PRK14168 bifunctional 5,10-met 95.7 0.04 8.7E-07 42.7 6.4 40 38-86 200-239 (297)
264 COG0499 SAM1 S-adenosylhomocys 95.7 0.029 6.3E-07 44.4 5.5 79 2-87 221-299 (420)
265 KOG1200|consensus 95.6 0.081 1.8E-06 38.5 7.2 75 1-87 26-101 (256)
266 PF00107 ADH_zinc_N: Zinc-bind 95.6 0.021 4.5E-07 38.4 4.1 79 1-86 2-91 (130)
267 cd05292 LDH_2 A subgroup of L- 95.6 0.029 6.3E-07 43.9 5.2 56 1-57 11-78 (308)
268 PRK09424 pntA NAD(P) transhydr 95.6 0.027 5.8E-07 47.0 5.2 82 2-86 177-287 (509)
269 PRK14184 bifunctional 5,10-met 95.6 0.033 7.2E-07 42.9 5.4 40 39-87 197-236 (286)
270 PRK13301 putative L-aspartate 95.5 0.17 3.7E-06 38.6 9.0 94 1-102 13-114 (267)
271 PRK14174 bifunctional 5,10-met 95.5 0.041 8.9E-07 42.7 5.7 40 39-87 199-238 (295)
272 PF05222 AlaDh_PNT_N: Alanine 95.4 0.33 7.1E-06 33.3 9.4 95 5-111 19-117 (136)
273 PLN02520 bifunctional 3-dehydr 95.4 0.076 1.6E-06 44.8 7.3 102 1-107 390-496 (529)
274 COG4221 Short-chain alcohol de 95.3 0.097 2.1E-06 39.3 6.9 77 1-89 18-94 (246)
275 PRK14167 bifunctional 5,10-met 95.3 0.064 1.4E-06 41.6 6.1 41 38-87 196-236 (297)
276 COG0300 DltE Short-chain dehyd 95.2 0.075 1.6E-06 40.6 6.3 32 1-32 18-49 (265)
277 PRK14982 acyl-ACP reductase; P 95.2 0.037 7.9E-07 43.9 4.7 97 1-109 167-266 (340)
278 PRK05678 succinyl-CoA syntheta 95.2 0.12 2.5E-06 40.2 7.3 98 2-107 21-121 (291)
279 TIGR02717 AcCoA-syn-alpha acet 95.0 0.18 3.9E-06 41.6 8.4 96 1-107 22-126 (447)
280 COG0686 Ald Alanine dehydrogen 95.0 0.028 6E-07 43.7 3.4 87 2-91 180-275 (371)
281 COG1064 AdhP Zn-dependent alco 95.0 0.1 2.3E-06 41.2 6.6 72 5-84 181-259 (339)
282 KOG2741|consensus 95.0 0.24 5.3E-06 39.0 8.5 90 13-109 32-130 (351)
283 PLN02968 Probable N-acetyl-gam 94.9 0.038 8.2E-07 44.6 4.2 79 2-88 51-138 (381)
284 TIGR03215 ac_ald_DH_ac acetald 94.9 0.16 3.4E-06 39.4 7.3 80 1-87 12-98 (285)
285 PRK05569 flavodoxin; Provision 94.9 0.76 1.6E-05 31.3 11.4 86 43-144 45-140 (141)
286 TIGR01019 sucCoAalpha succinyl 94.9 0.19 4.1E-06 39.0 7.7 98 2-107 19-119 (286)
287 COG1090 Predicted nucleoside-d 94.9 0.12 2.6E-06 39.6 6.4 56 1-56 10-66 (297)
288 PRK02472 murD UDP-N-acetylmura 94.9 0.54 1.2E-05 38.6 10.9 104 1-104 16-136 (447)
289 KOG1014|consensus 94.9 0.038 8.2E-07 42.8 3.8 32 1-32 61-92 (312)
290 PRK09496 trkA potassium transp 94.8 0.15 3.3E-06 41.8 7.6 57 1-57 242-308 (453)
291 TIGR01851 argC_other N-acetyl- 94.8 0.12 2.6E-06 40.4 6.4 68 1-86 13-82 (310)
292 PRK08300 acetaldehyde dehydrog 94.7 0.19 4.1E-06 39.2 7.4 79 2-87 16-104 (302)
293 PTZ00082 L-lactate dehydrogena 94.7 0.12 2.5E-06 40.8 6.3 53 1-54 17-82 (321)
294 COG2227 UbiG 2-polyprenyl-3-me 94.7 0.19 4.1E-06 37.7 7.0 78 2-85 70-162 (243)
295 PF00056 Ldh_1_N: lactate/mala 94.7 0.036 7.8E-07 38.2 3.1 55 2-56 13-79 (141)
296 TIGR03026 NDP-sugDHase nucleot 94.6 0.16 3.4E-06 41.4 7.1 75 3-84 336-410 (411)
297 TIGR01771 L-LDH-NAD L-lactate 94.6 0.12 2.7E-06 40.2 6.2 56 1-56 7-74 (299)
298 PRK14874 aspartate-semialdehyd 94.6 0.057 1.2E-06 42.8 4.4 78 2-86 14-96 (334)
299 PRK04207 glyceraldehyde-3-phos 94.6 0.18 4E-06 40.0 7.2 79 1-86 12-111 (341)
300 PRK03369 murD UDP-N-acetylmura 94.5 0.45 9.7E-06 39.7 9.6 103 2-104 24-145 (488)
301 PF05368 NmrA: NmrA-like famil 94.5 0.098 2.1E-06 38.9 5.2 56 1-56 10-74 (233)
302 PRK10206 putative oxidoreducta 94.5 0.39 8.4E-06 38.2 8.8 87 13-106 27-119 (344)
303 PRK06718 precorrin-2 dehydroge 94.4 0.47 1E-05 34.8 8.6 58 1-58 21-82 (202)
304 CHL00194 ycf39 Ycf39; Provisio 94.4 0.081 1.8E-06 41.3 4.9 55 1-55 12-73 (317)
305 PRK05568 flavodoxin; Provision 94.4 1.1 2.3E-05 30.6 11.7 110 3-143 20-139 (142)
306 PRK07890 short chain dehydroge 94.4 0.2 4.4E-06 37.5 6.8 30 1-30 17-46 (258)
307 PLN02383 aspartate semialdehyd 94.3 0.074 1.6E-06 42.3 4.4 78 2-86 20-102 (344)
308 cd01076 NAD_bind_1_Glu_DH NAD( 94.3 0.29 6.4E-06 36.6 7.4 98 1-109 42-159 (227)
309 TIGR02853 spore_dpaA dipicolin 94.3 0.76 1.6E-05 35.6 9.9 140 4-152 15-182 (287)
310 PRK01710 murD UDP-N-acetylmura 94.2 0.47 1E-05 39.2 9.1 104 2-105 26-146 (458)
311 PRK06200 2,3-dihydroxy-2,3-dih 94.2 0.25 5.5E-06 37.3 7.0 31 1-31 18-48 (263)
312 PF13561 adh_short_C2: Enoyl-( 94.1 0.078 1.7E-06 39.6 4.1 74 1-85 8-82 (241)
313 cd00300 LDH_like L-lactate deh 94.1 0.13 2.7E-06 40.2 5.3 56 1-57 9-77 (300)
314 PRK01390 murD UDP-N-acetylmura 94.1 0.21 4.5E-06 41.3 6.8 104 2-105 21-143 (460)
315 cd01483 E1_enzyme_family Super 94.1 0.42 9.2E-06 32.7 7.4 104 1-112 10-124 (143)
316 PRK06139 short chain dehydroge 94.0 0.23 4.9E-06 39.3 6.7 30 1-30 19-48 (330)
317 PRK08862 short chain dehydroge 94.0 0.24 5.3E-06 36.8 6.6 30 1-30 17-46 (227)
318 PRK05867 short chain dehydroge 94.0 0.2 4.4E-06 37.6 6.1 30 1-30 21-50 (253)
319 PRK06182 short chain dehydroge 94.0 0.36 7.8E-06 36.7 7.5 30 1-30 15-44 (273)
320 TIGR02354 thiF_fam2 thiamine b 93.9 0.17 3.6E-06 37.1 5.4 22 1-22 32-54 (200)
321 PRK00066 ldh L-lactate dehydro 93.9 0.2 4.4E-06 39.4 6.1 56 1-56 17-83 (315)
322 PRK07478 short chain dehydroge 93.8 0.27 5.9E-06 36.8 6.6 30 1-30 18-47 (254)
323 PRK14106 murD UDP-N-acetylmura 93.7 0.36 7.8E-06 39.7 7.6 103 1-103 16-135 (450)
324 TIGR01777 yfcH conserved hypot 93.7 0.13 2.8E-06 39.3 4.7 55 1-55 10-66 (292)
325 PRK12429 3-hydroxybutyrate deh 93.7 0.27 5.8E-06 36.8 6.4 30 1-30 16-45 (258)
326 PRK08265 short chain dehydroge 93.7 0.31 6.7E-06 36.8 6.7 31 1-31 18-48 (261)
327 KOG1502|consensus 93.7 0.15 3.3E-06 40.1 5.0 54 1-54 18-86 (327)
328 TIGR03649 ergot_EASG ergot alk 93.7 0.2 4.4E-06 38.3 5.8 56 1-56 11-77 (285)
329 PRK02006 murD UDP-N-acetylmura 93.7 1 2.2E-05 37.7 10.2 52 2-53 19-76 (498)
330 PRK06180 short chain dehydroge 93.6 0.33 7.2E-06 37.0 6.8 31 1-31 16-46 (277)
331 PRK11579 putative oxidoreducta 93.6 1.1 2.4E-05 35.5 9.9 84 13-105 29-118 (346)
332 PRK08643 acetoin reductase; Va 93.5 0.32 6.9E-06 36.5 6.5 30 1-30 14-43 (256)
333 PRK11863 N-acetyl-gamma-glutam 93.5 0.2 4.3E-06 39.3 5.4 68 2-86 15-83 (313)
334 PLN02780 ketoreductase/ oxidor 93.5 0.18 4E-06 39.6 5.3 30 1-30 65-94 (320)
335 PRK07825 short chain dehydroge 93.5 0.36 7.9E-06 36.6 6.8 30 1-30 17-46 (273)
336 PRK07109 short chain dehydroge 93.5 0.29 6.3E-06 38.6 6.4 74 1-86 20-95 (334)
337 PRK05866 short chain dehydroge 93.4 0.3 6.4E-06 37.8 6.3 30 1-30 52-81 (293)
338 PRK00141 murD UDP-N-acetylmura 93.4 1.6 3.4E-05 36.4 10.8 104 2-105 27-150 (473)
339 TIGR01082 murC UDP-N-acetylmur 93.3 0.79 1.7E-05 37.8 9.0 102 2-103 11-126 (448)
340 PRK06124 gluconate 5-dehydroge 93.3 0.37 8E-06 36.1 6.6 30 1-30 23-52 (256)
341 PRK05693 short chain dehydroge 93.3 0.53 1.2E-05 35.7 7.5 30 1-30 13-42 (274)
342 PRK08340 glucose-1-dehydrogena 93.3 0.37 8E-06 36.3 6.6 30 1-30 12-41 (259)
343 PRK06349 homoserine dehydrogen 93.3 0.27 5.9E-06 40.3 6.1 107 1-113 14-135 (426)
344 PRK07814 short chain dehydroge 93.3 0.35 7.7E-06 36.5 6.4 75 1-85 22-96 (263)
345 PRK07067 sorbitol dehydrogenas 93.2 0.4 8.6E-06 36.0 6.6 31 1-31 18-48 (257)
346 TIGR01296 asd_B aspartate-semi 93.2 0.094 2E-06 41.7 3.2 78 2-86 12-94 (339)
347 PLN03209 translocon at the inn 93.2 0.16 3.4E-06 43.1 4.6 55 1-55 92-168 (576)
348 TIGR02415 23BDH acetoin reduct 93.1 0.39 8.5E-06 35.9 6.4 76 1-86 12-87 (254)
349 PRK07454 short chain dehydroge 93.0 0.41 8.9E-06 35.5 6.4 30 1-30 18-47 (241)
350 PRK05876 short chain dehydroge 93.0 0.38 8.2E-06 36.8 6.2 29 1-29 18-46 (275)
351 TIGR03325 BphB_TodD cis-2,3-di 93.0 0.46 9.9E-06 35.9 6.6 31 1-31 17-47 (262)
352 PRK08213 gluconate 5-dehydroge 93.0 0.36 7.8E-06 36.3 6.0 75 1-85 24-98 (259)
353 PRK07063 short chain dehydroge 92.9 0.39 8.5E-06 36.1 6.2 30 1-30 19-48 (260)
354 PRK06756 flavodoxin; Provision 92.9 2.2 4.7E-05 29.4 11.4 113 3-144 20-144 (148)
355 PRK07024 short chain dehydroge 92.8 0.52 1.1E-05 35.5 6.7 31 1-31 14-44 (257)
356 PRK13394 3-hydroxybutyrate deh 92.8 0.39 8.5E-06 36.0 6.0 30 1-30 19-48 (262)
357 PRK12939 short chain dehydroge 92.8 0.44 9.6E-06 35.4 6.3 30 1-30 19-48 (250)
358 cd05294 LDH-like_MDH_nadp A la 92.7 0.34 7.5E-06 37.9 5.7 53 2-55 13-81 (309)
359 PRK12828 short chain dehydroge 92.7 0.73 1.6E-05 33.9 7.3 73 1-85 19-91 (239)
360 PRK04308 murD UDP-N-acetylmura 92.7 2.2 4.8E-05 35.1 10.7 24 1-24 16-39 (445)
361 PRK06720 hypothetical protein; 92.7 0.62 1.3E-05 33.1 6.5 29 1-29 28-56 (169)
362 PRK08589 short chain dehydroge 92.6 0.6 1.3E-05 35.5 6.9 75 1-86 18-92 (272)
363 PRK07774 short chain dehydroge 92.6 0.44 9.4E-06 35.5 6.0 29 1-29 18-46 (250)
364 PRK07523 gluconate 5-dehydroge 92.6 0.53 1.1E-05 35.3 6.5 29 1-29 22-50 (255)
365 PRK03803 murD UDP-N-acetylmura 92.6 1.1 2.5E-05 36.8 8.8 111 2-112 18-144 (448)
366 PRK05854 short chain dehydroge 92.5 0.73 1.6E-05 36.0 7.3 30 1-30 26-55 (313)
367 PRK08085 gluconate 5-dehydroge 92.5 0.54 1.2E-05 35.2 6.4 29 1-29 21-49 (254)
368 PRK10569 NAD(P)H-dependent FMN 92.5 2.4 5.3E-05 30.8 9.5 134 4-143 22-168 (191)
369 KOG4230|consensus 92.4 0.32 6.9E-06 41.1 5.3 42 37-87 196-237 (935)
370 PRK06196 oxidoreductase; Provi 92.4 0.56 1.2E-05 36.6 6.6 30 1-30 38-67 (315)
371 PRK00421 murC UDP-N-acetylmura 92.3 0.81 1.8E-05 37.9 7.7 102 2-103 19-134 (461)
372 TIGR01963 PHB_DH 3-hydroxybuty 92.3 0.62 1.3E-05 34.7 6.5 31 1-31 13-43 (255)
373 PRK06179 short chain dehydroge 92.3 0.46 1E-05 35.9 5.9 68 1-86 16-83 (270)
374 PRK15057 UDP-glucose 6-dehydro 92.3 0.49 1.1E-05 38.3 6.2 56 3-62 319-374 (388)
375 PRK05653 fabG 3-ketoacyl-(acyl 92.2 0.63 1.4E-05 34.3 6.5 29 1-29 17-45 (246)
376 PRK15182 Vi polysaccharide bio 92.2 0.65 1.4E-05 38.1 6.9 81 3-88 337-417 (425)
377 PRK07062 short chain dehydroge 92.2 0.51 1.1E-05 35.6 6.0 30 1-30 20-49 (265)
378 PRK06505 enoyl-(acyl carrier p 92.2 0.69 1.5E-05 35.3 6.8 25 1-25 21-45 (271)
379 PRK06057 short chain dehydroge 92.2 0.89 1.9E-05 34.1 7.3 30 1-30 19-48 (255)
380 PF04016 DUF364: Domain of unk 92.1 0.14 3.1E-06 35.5 2.6 76 4-86 22-97 (147)
381 PRK07533 enoyl-(acyl carrier p 92.1 0.83 1.8E-05 34.5 7.0 25 1-25 24-48 (258)
382 COG0677 WecC UDP-N-acetyl-D-ma 92.1 0.58 1.3E-05 37.8 6.2 79 4-89 346-425 (436)
383 PRK07326 short chain dehydroge 92.0 0.67 1.5E-05 34.2 6.4 30 1-30 18-47 (237)
384 PRK08277 D-mannonate oxidoredu 92.0 0.49 1.1E-05 36.0 5.8 30 1-30 22-51 (278)
385 PRK06703 flavodoxin; Provision 91.9 3 6.5E-05 28.8 10.8 88 3-108 20-119 (151)
386 PRK10538 malonic semialdehyde 91.9 0.76 1.7E-05 34.3 6.6 30 1-30 12-41 (248)
387 PRK07074 short chain dehydroge 91.9 0.96 2.1E-05 33.9 7.1 31 1-31 14-44 (257)
388 TIGR01087 murD UDP-N-acetylmur 91.8 2.2 4.8E-05 34.9 9.7 112 2-113 11-139 (433)
389 PRK07035 short chain dehydroge 91.8 0.71 1.5E-05 34.5 6.4 30 1-30 20-49 (252)
390 TIGR03366 HpnZ_proposed putati 91.8 1.4 3.1E-05 33.6 8.1 77 2-85 133-219 (280)
391 PRK06194 hypothetical protein; 91.8 0.65 1.4E-05 35.5 6.2 30 1-30 18-47 (287)
392 KOG1370|consensus 91.8 1.1 2.4E-05 35.1 7.1 81 2-89 226-306 (434)
393 cd05211 NAD_bind_Glu_Leu_Phe_V 91.7 2.1 4.6E-05 31.8 8.6 98 1-108 34-149 (217)
394 PRK06172 short chain dehydroge 91.7 0.78 1.7E-05 34.3 6.5 30 1-30 19-48 (253)
395 PRK07677 short chain dehydroge 91.6 0.86 1.9E-05 34.1 6.7 30 1-30 13-42 (252)
396 TIGR03206 benzo_BadH 2-hydroxy 91.6 0.79 1.7E-05 34.1 6.4 30 1-30 15-44 (250)
397 PRK00676 hemA glutamyl-tRNA re 91.6 0.3 6.5E-06 38.7 4.2 48 1-53 185-233 (338)
398 PRK05993 short chain dehydroge 91.5 0.91 2E-05 34.6 6.8 31 1-31 16-46 (277)
399 COG3967 DltE Short-chain dehyd 91.5 0.43 9.3E-06 35.2 4.5 32 1-32 17-48 (245)
400 PRK07984 enoyl-(acyl carrier p 91.5 0.9 2E-05 34.5 6.7 23 1-23 20-42 (262)
401 KOG1201|consensus 91.5 0.87 1.9E-05 35.3 6.4 75 1-86 50-124 (300)
402 PRK05671 aspartate-semialdehyd 91.4 0.25 5.4E-06 39.2 3.6 78 2-87 17-100 (336)
403 PRK08267 short chain dehydroge 91.4 1 2.3E-05 33.8 6.9 31 1-31 13-43 (260)
404 PRK07231 fabG 3-ketoacyl-(acyl 91.4 0.7 1.5E-05 34.3 5.9 30 1-30 17-46 (251)
405 PF03848 TehB: Tellurite resis 91.4 0.18 3.8E-06 36.7 2.5 72 6-80 45-129 (192)
406 PRK07097 gluconate 5-dehydroge 91.3 1 2.2E-05 34.0 6.8 30 1-30 22-51 (265)
407 PRK01438 murD UDP-N-acetylmura 91.3 3.2 6.9E-05 34.5 10.2 53 2-54 28-86 (480)
408 PRK09186 flagellin modificatio 91.3 0.91 2E-05 33.9 6.5 30 1-30 16-45 (256)
409 PRK12829 short chain dehydroge 91.3 0.94 2E-05 34.0 6.6 30 1-30 23-52 (264)
410 PRK10537 voltage-gated potassi 91.2 1.8 3.9E-05 35.2 8.4 97 1-109 251-356 (393)
411 PRK00517 prmA ribosomal protei 91.2 2 4.3E-05 32.5 8.2 98 5-107 133-235 (250)
412 cd05293 LDH_1 A subgroup of L- 91.2 0.49 1.1E-05 37.2 5.0 54 1-55 14-80 (312)
413 PRK05872 short chain dehydroge 91.1 1 2.3E-05 34.7 6.8 73 1-86 21-95 (296)
414 PRK05086 malate dehydrogenase; 90.9 1.1 2.3E-05 35.3 6.6 56 1-56 12-79 (312)
415 PLN02253 xanthoxin dehydrogena 90.9 0.92 2E-05 34.5 6.3 74 1-85 30-103 (280)
416 COG3268 Uncharacterized conser 90.8 0.51 1.1E-05 37.2 4.7 102 2-108 19-131 (382)
417 PRK08415 enoyl-(acyl carrier p 90.8 1.5 3.2E-05 33.6 7.3 23 1-23 19-41 (274)
418 PRK06079 enoyl-(acyl carrier p 90.8 1.3 2.8E-05 33.3 6.8 23 1-23 21-43 (252)
419 PRK06482 short chain dehydroge 90.7 1.2 2.5E-05 33.9 6.7 31 1-31 14-44 (276)
420 PRK11921 metallo-beta-lactamas 90.7 7.2 0.00016 31.7 11.5 86 44-144 298-390 (394)
421 PRK08339 short chain dehydroge 90.7 0.32 7E-06 36.9 3.5 30 1-30 20-49 (263)
422 TIGR03466 HpnA hopanoid-associ 90.7 0.29 6.4E-06 38.0 3.4 55 1-55 12-73 (328)
423 PRK09242 tropinone reductase; 90.7 1.6 3.4E-05 32.7 7.3 30 1-30 21-50 (257)
424 PF02056 Glyco_hydro_4: Family 90.6 0.28 6E-06 35.4 2.9 44 15-58 30-85 (183)
425 PRK06270 homoserine dehydrogen 90.6 1.5 3.2E-05 34.9 7.3 72 38-112 79-155 (341)
426 PRK06719 precorrin-2 dehydroge 90.6 1.6 3.5E-05 30.6 6.7 60 2-64 25-87 (157)
427 TIGR01470 cysG_Nterm siroheme 90.6 4 8.7E-05 30.0 9.1 56 2-57 21-80 (205)
428 COG0771 MurD UDP-N-acetylmuram 90.6 3.9 8.4E-05 33.9 9.7 111 2-112 19-146 (448)
429 PRK06138 short chain dehydroge 90.5 1.1 2.4E-05 33.3 6.3 75 1-86 17-91 (252)
430 PRK06949 short chain dehydroge 90.5 1.3 2.8E-05 33.1 6.7 30 1-30 21-50 (258)
431 PRK12384 sorbitol-6-phosphate 90.5 1.1 2.5E-05 33.5 6.4 29 1-29 14-42 (259)
432 COG2910 Putative NADH-flavin r 90.5 0.4 8.6E-06 34.7 3.5 56 2-57 13-73 (211)
433 PRK11064 wecC UDP-N-acetyl-D-m 90.4 0.71 1.5E-05 37.7 5.5 55 3-58 343-398 (415)
434 PRK05855 short chain dehydroge 90.4 0.77 1.7E-05 38.7 5.9 30 1-30 327-356 (582)
435 cd08230 glucose_DH Glucose deh 90.4 1.6 3.5E-05 34.5 7.4 76 2-84 185-269 (355)
436 PRK09880 L-idonate 5-dehydroge 90.3 2.1 4.5E-05 33.8 7.9 77 2-85 182-267 (343)
437 PRK08664 aspartate-semialdehyd 90.2 0.49 1.1E-05 37.7 4.3 80 1-87 15-110 (349)
438 PRK07453 protochlorophyllide o 90.2 0.98 2.1E-05 35.3 6.0 31 1-31 18-48 (322)
439 PRK08263 short chain dehydroge 90.2 1.4 3E-05 33.5 6.6 31 1-31 15-45 (275)
440 KOG0725|consensus 90.2 1.1 2.3E-05 34.5 5.9 31 1-31 20-50 (270)
441 PRK06114 short chain dehydroge 90.1 1.5 3.2E-05 32.9 6.7 24 1-24 20-43 (254)
442 PRK05650 short chain dehydroge 90.1 1.4 3E-05 33.3 6.6 30 1-30 12-41 (270)
443 PRK06398 aldose dehydrogenase; 90.1 0.88 1.9E-05 34.3 5.5 25 1-25 18-42 (258)
444 cd05290 LDH_3 A subgroup of L- 90.0 0.59 1.3E-05 36.6 4.5 56 1-56 10-78 (307)
445 PRK07856 short chain dehydroge 90.0 1.1 2.3E-05 33.6 5.9 25 1-25 18-42 (252)
446 PRK08217 fabG 3-ketoacyl-(acyl 90.0 1.2 2.7E-05 33.0 6.2 29 1-29 17-45 (253)
447 PLN00112 malate dehydrogenase 89.9 1.5 3.2E-05 36.3 6.9 56 1-56 112-186 (444)
448 PRK06500 short chain dehydroge 89.8 1.7 3.7E-05 32.3 6.8 30 1-30 18-47 (249)
449 COG1063 Tdh Threonine dehydrog 89.8 2 4.3E-05 34.3 7.5 78 2-86 181-271 (350)
450 PRK06935 2-deoxy-D-gluconate 3 89.8 1.4 3E-05 33.1 6.3 27 1-28 27-53 (258)
451 PRK06484 short chain dehydroge 89.7 1.2 2.6E-05 37.3 6.4 73 1-86 281-353 (520)
452 TIGR00477 tehB tellurite resis 89.7 1.3 2.9E-05 32.1 5.9 72 5-79 44-128 (195)
453 PRK06197 short chain dehydroge 89.7 0.99 2.1E-05 35.0 5.6 29 1-29 28-56 (306)
454 TIGR01759 MalateDH-SF1 malate 89.6 2.3 4.9E-05 33.7 7.5 55 2-56 16-89 (323)
455 PRK08159 enoyl-(acyl carrier p 89.6 1.7 3.7E-05 33.1 6.8 23 1-23 24-46 (272)
456 PRK12826 3-ketoacyl-(acyl-carr 89.6 1.4 3E-05 32.6 6.2 29 1-29 18-46 (251)
457 PRK07832 short chain dehydroge 89.6 2.2 4.7E-05 32.4 7.3 29 1-29 12-40 (272)
458 PRK08251 short chain dehydroge 89.5 1.3 2.9E-05 32.9 6.0 30 1-30 14-43 (248)
459 PRK12743 oxidoreductase; Provi 89.5 1.8 3.8E-05 32.5 6.7 75 1-85 14-89 (256)
460 PRK05717 oxidoreductase; Valid 89.5 1.7 3.7E-05 32.5 6.6 29 1-29 22-50 (255)
461 PRK08628 short chain dehydroge 89.5 1.7 3.7E-05 32.5 6.6 26 1-26 19-44 (258)
462 PRK06483 dihydromonapterin red 89.4 1.9 4.2E-05 31.8 6.8 25 1-25 14-38 (236)
463 TIGR01832 kduD 2-deoxy-D-gluco 89.4 2.1 4.5E-05 31.8 7.0 23 1-23 17-39 (248)
464 PRK06484 short chain dehydroge 89.3 1.5 3.2E-05 36.7 6.7 31 1-31 17-47 (520)
465 PRK07889 enoyl-(acyl carrier p 89.3 2.2 4.7E-05 32.2 7.1 23 1-23 21-43 (256)
466 PRK08594 enoyl-(acyl carrier p 89.3 2.4 5.3E-05 32.0 7.3 23 1-23 21-43 (257)
467 TIGR00978 asd_EA aspartate-sem 89.2 0.58 1.3E-05 37.2 4.0 79 1-86 12-106 (341)
468 PLN02650 dihydroflavonol-4-red 89.1 0.85 1.9E-05 36.1 4.9 54 1-54 17-85 (351)
469 PRK13255 thiopurine S-methyltr 89.0 0.95 2.1E-05 33.6 4.8 26 6-31 52-77 (218)
470 PRK05875 short chain dehydroge 89.0 2.2 4.8E-05 32.3 7.0 29 1-29 19-47 (276)
471 PRK06841 short chain dehydroge 89.0 2.3 5E-05 31.7 7.0 25 1-25 27-51 (255)
472 PRK07831 short chain dehydroge 88.9 2 4.4E-05 32.3 6.7 30 1-30 30-59 (262)
473 TIGR03567 FMN_reduc_SsuE FMN r 88.8 6.5 0.00014 27.8 9.9 61 4-64 21-88 (171)
474 PLN00015 protochlorophyllide r 88.8 1.6 3.4E-05 34.0 6.1 30 1-30 9-39 (308)
475 PRK06463 fabG 3-ketoacyl-(acyl 88.8 3.1 6.8E-05 31.1 7.6 23 1-23 19-41 (255)
476 PRK07576 short chain dehydroge 88.8 1.8 4E-05 32.7 6.4 29 1-29 21-49 (264)
477 PRK06914 short chain dehydroge 88.7 1.6 3.5E-05 33.1 6.1 30 1-30 15-44 (280)
478 PLN00141 Tic62-NAD(P)-related 88.7 0.94 2E-05 34.0 4.7 56 1-56 29-95 (251)
479 PRK08226 short chain dehydroge 88.7 2 4.4E-05 32.2 6.6 24 1-24 18-41 (263)
480 PRK05884 short chain dehydroge 88.6 0.55 1.2E-05 34.7 3.3 31 1-31 12-42 (223)
481 PRK06101 short chain dehydroge 88.6 0.54 1.2E-05 35.0 3.3 32 1-32 13-44 (240)
482 PRK07775 short chain dehydroge 88.5 1.6 3.5E-05 33.2 5.9 29 1-29 22-50 (274)
483 PRK05472 redox-sensing transcr 88.4 0.43 9.3E-06 35.2 2.6 57 2-59 96-159 (213)
484 PRK05452 anaerobic nitric oxid 88.4 13 0.00029 31.1 11.5 84 46-145 304-394 (479)
485 PRK08063 enoyl-(acyl carrier p 88.4 1.8 3.9E-05 32.2 6.0 29 1-29 16-45 (250)
486 PRK15076 alpha-galactosidase; 88.3 0.66 1.4E-05 38.2 3.9 45 13-57 30-86 (431)
487 PRK12823 benD 1,6-dihydroxycyc 88.3 2 4.3E-05 32.2 6.3 24 1-24 20-43 (260)
488 PRK07069 short chain dehydroge 88.3 2.5 5.5E-05 31.3 6.8 29 1-29 11-40 (251)
489 PRK12481 2-deoxy-D-gluconate 3 88.2 2 4.2E-05 32.3 6.2 23 1-23 20-42 (251)
490 PRK06181 short chain dehydroge 88.2 2 4.4E-05 32.2 6.3 29 1-29 13-41 (263)
491 cd05188 MDR Medium chain reduc 88.2 5.3 0.00012 29.7 8.6 79 1-86 146-234 (271)
492 PLN02989 cinnamyl-alcohol dehy 88.2 1.2 2.6E-05 34.7 5.2 55 1-55 17-86 (325)
493 PLN02686 cinnamoyl-CoA reducta 88.1 0.84 1.8E-05 36.6 4.3 29 1-29 65-93 (367)
494 PRK08309 short chain dehydroge 88.0 3.9 8.5E-05 29.3 7.3 30 1-30 11-40 (177)
495 PRK09730 putative NAD(P)-bindi 88.0 2.2 4.8E-05 31.5 6.3 29 1-29 13-42 (247)
496 PLN02662 cinnamyl-alcohol dehy 88.0 1.6 3.6E-05 33.8 5.8 55 1-55 16-85 (322)
497 COG2264 PrmA Ribosomal protein 87.9 6.3 0.00014 30.8 8.7 99 5-108 176-286 (300)
498 PF10728 DUF2520: Domain of un 87.8 5.2 0.00011 27.2 7.4 56 123-178 3-60 (132)
499 PRK06947 glucose-1-dehydrogena 87.8 2.8 6.1E-05 31.1 6.8 29 1-29 14-43 (248)
500 TIGR01081 mpl UDP-N-acetylmura 87.8 1.6 3.5E-05 35.9 5.9 101 3-103 13-129 (448)
No 1
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=1.7e-39 Score=245.21 Aligned_cols=183 Identities=48% Similarity=0.745 Sum_probs=177.6
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchh-HHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDA-SQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 79 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~i 79 (183)
||.+||.+|.+.||+|++|||++++ .+.+.+.|.....++.|+++.+|+||+++|++.+++.++++..++.+.+++|++
T Consensus 11 MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i 90 (286)
T COG2084 11 MGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKPGAI 90 (286)
T ss_pred hhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccchhhcCCCCCE
Confidence 8999999999999999999999999 666777799999999999999999999999999999999998899999999999
Q ss_pred EEeccCCCchhHHHHHHHHHhcCCcEEeecccCCHHHHhcCceEEEecCCHHHHHHHHHHHHHhcCCeEEeCCcchHHHH
Q psy755 80 VIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVA 159 (183)
Q Consensus 80 iid~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~g~~g~a~~~ 159 (183)
+||+||..|...+.+.+.++++|.+|+|+|++|++..+..|+++++++|+++.+++++++|+.+|.+++++|+.|+|+.+
T Consensus 91 ~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pvl~~~g~~i~~~G~~G~G~~~ 170 (286)
T COG2084 91 VIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNIVHVGPVGAGQAA 170 (286)
T ss_pred EEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHHHHHhcCceEEECCCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccC
Q psy755 160 KLCNNMLLGVTMMGVAEAMNLGVK 183 (183)
Q Consensus 160 k~~~~~~~~~~~~~~~E~~~~~~~ 183 (183)
|+++|.+...+++.++|++.+++|
T Consensus 171 Kl~nn~l~~~~~~a~aEAl~la~k 194 (286)
T COG2084 171 KLANNILLAGNIAALAEALALAEK 194 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999876
No 2
>KOG0409|consensus
Probab=100.00 E-value=1.5e-35 Score=220.75 Aligned_cols=183 Identities=45% Similarity=0.745 Sum_probs=178.4
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
||.+|+.+|.++||+|++|||+.++.+.+.+.|....+++.|+++.||+||.++|++.+.+.+++|..++...+++++..
T Consensus 46 MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~ 125 (327)
T KOG0409|consen 46 MGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKA 125 (327)
T ss_pred chHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCCcceeeccCCCce
Confidence 89999999999999999999999999999999999999999999999999999999999999999988899989998887
Q ss_pred -EeccCCCchhHHHHHHHHHhcCCcEEeecccCCHHHHhcCceEEEecCCHHHHHHHHHHHHHhcCCeEEeCCcchHHHH
Q psy755 81 -IDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVA 159 (183)
Q Consensus 81 -id~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~g~~g~a~~~ 159 (183)
||.|++.|..+.++.+.+..++..|+|+|++|+...++.|+++|+.+|+++.+++..++|+.+|++++++|..|.|+.+
T Consensus 126 ~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~~~~~mGk~~~~~G~~GnG~~~ 205 (327)
T KOG0409|consen 126 TVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASPVFKLMGKNVVFLGGVGNGQAA 205 (327)
T ss_pred EEeccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHHHHHHhcceEEEecccCchHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccC
Q psy755 160 KLCNNMLLGVTMMGVAEAMNLGVK 183 (183)
Q Consensus 160 k~~~~~~~~~~~~~~~E~~~~~~~ 183 (183)
|+++|.+.+..|..++|++.+++|
T Consensus 206 Kl~nnm~~g~~M~g~aEal~la~r 229 (327)
T KOG0409|consen 206 KLCNNMLLGSSMVGLAEALALADR 229 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999875
No 3
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=100.00 E-value=1.7e-35 Score=238.37 Aligned_cols=178 Identities=26% Similarity=0.364 Sum_probs=169.2
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHc-----CCcccCCHHHHhcc---CCEEEEecCChHHHHHHhcCCccccc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKE-----GANMALSLSTLASG---AEFIISMLPASQDVLDAYDGSDGILK 72 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~~~---adiVi~~vp~~~~~~~v~~~~~~l~~ 72 (183)
||..||++|+++||+|.+|||++++.+.+.+. ++..+++++++++. +|+||+++|++.+++.++ +++.+
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi---~~l~~ 77 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI---EQLLP 77 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH---HHHHh
Confidence 99999999999999999999999999999874 47778899998875 899999999999999998 78999
Q ss_pred cCCCCcEEEeccCCCchhHHHHHHHHHhcCCcEEeecccCCHHHHhcCceEEEecCCHHHHHHHHHHHHHhcCCe-----
Q psy755 73 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNI----- 147 (183)
Q Consensus 73 ~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~----- 147 (183)
.+.+|++|||+||+.+.+.....+.+.++|++|+++|++|++..+..|+ .++++|+++++++++++|+.++.++
T Consensus 78 ~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~-siM~GG~~~a~~~~~piL~~ia~~~~~g~~ 156 (459)
T PRK09287 78 LLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGP-SIMPGGQKEAYELVAPILEKIAAKVEDGEP 156 (459)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHHHHhhhhcCCCC
Confidence 9999999999999999999999999999999999999999999999998 9999999999999999999999876
Q ss_pred --EEeCCcchHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy755 148 --VHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGV 182 (183)
Q Consensus 148 --~~~g~~g~a~~~k~~~~~~~~~~~~~~~E~~~~~~ 182 (183)
.++|+.|+|+++||+||.+++..+++++|++.+++
T Consensus 157 c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~ 193 (459)
T PRK09287 157 CVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLK 193 (459)
T ss_pred ceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999876
No 4
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=100.00 E-value=3.5e-35 Score=237.67 Aligned_cols=179 Identities=21% Similarity=0.297 Sum_probs=167.7
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHc----CCc---ccCCHHHHhcc---CCEEEEecCChHHHHHHhcCCccc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKE----GAN---MALSLSTLASG---AEFIISMLPASQDVLDAYDGSDGI 70 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~---adiVi~~vp~~~~~~~v~~~~~~l 70 (183)
||.+||++|+++||+|++|||++++.+.+.+. |.. .++++.++++. +|+||+++|++.+++.++ +++
T Consensus 17 MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~~Vi---~gl 93 (493)
T PLN02350 17 MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVDQTI---KAL 93 (493)
T ss_pred HHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHHHHH---HHH
Confidence 89999999999999999999999999988763 533 57789999876 999999999999999998 788
Q ss_pred cccCCCCcEEEeccCCCchhHHHHHHHHHhcCCcEEeecccCCHHHHhcCceEEEecCCHHHHHHHHHHHHHhcCC----
Q psy755 71 LKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRN---- 146 (183)
Q Consensus 71 ~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~---- 146 (183)
.+.+.+|++|||+||+.|.+...+.+.+.++|++|+++||+|++..+..|+ +++++|+++++++++++|+.++.+
T Consensus 94 ~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~-~im~GG~~~a~~~v~pvL~~ia~k~~~~ 172 (493)
T PLN02350 94 SEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGP-SLMPGGSFEAYKNIEDILEKVAAQVDDG 172 (493)
T ss_pred HhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCC-eEEecCCHHHHHHHHHHHHHHhhhcCCC
Confidence 899999999999999999999999999999999999999999999999998 899999999999999999999964
Q ss_pred --eEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy755 147 --IVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVK 183 (183)
Q Consensus 147 --~~~~g~~g~a~~~k~~~~~~~~~~~~~~~E~~~~~~~ 183 (183)
++++|+.|+|+++||++|.+++..+++++|++.++++
T Consensus 173 ~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~ 211 (493)
T PLN02350 173 PCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKS 211 (493)
T ss_pred CcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999999999999999998864
No 5
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=100.00 E-value=1.5e-34 Score=222.64 Aligned_cols=183 Identities=52% Similarity=0.831 Sum_probs=174.3
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
||.+||++|.++||+|++|||++++.+.+.+.|....+++.++++++|+||+|+|++++++.++++.+++.+.+++|+++
T Consensus 7 mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~~~g~~v 86 (288)
T TIGR01692 7 MGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKVAKGSLL 86 (288)
T ss_pred hHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcCCCCCEE
Confidence 89999999999999999999999999999988888888999999999999999999888999987767888888999999
Q ss_pred EeccCCCchhHHHHHHHHHhcCCcEEeecccCCHHHHhcCceEEEecCCHHHHHHHHHHHHHhcCCeEEeCCcchHHHHH
Q psy755 81 IDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAK 160 (183)
Q Consensus 81 id~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~g~~g~a~~~k 160 (183)
||+|+..|...+.+.+.+.++|++|+++|++|++..+..+++.++++|+++.+++++++|+.+|.+++++|+.|+|+++|
T Consensus 87 id~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~K 166 (288)
T TIGR01692 87 IDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAK 166 (288)
T ss_pred EECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEeeCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccC
Q psy755 161 LCNNMLLGVTMMGVAEAMNLGVK 183 (183)
Q Consensus 161 ~~~~~~~~~~~~~~~E~~~~~~~ 183 (183)
+++|.+.+.++..++|++.+++|
T Consensus 167 l~~n~~~~~~~~~~~Ea~~la~~ 189 (288)
T TIGR01692 167 ICNNMLLGISMIGTAEAMALGEK 189 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999875
No 6
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=4.9e-34 Score=219.61 Aligned_cols=182 Identities=31% Similarity=0.536 Sum_probs=170.1
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
||.+||++|.+.||+|++|||++. .+++.+.|.....++.+++++||+||+++|++.+++.++++..++.+.+.+|++|
T Consensus 11 MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~~~~~g~iv 89 (292)
T PRK15059 11 MGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKTI 89 (292)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhccCCCCCEE
Confidence 899999999999999999999985 5677777887888999999999999999999989999987655677778899999
Q ss_pred EeccCCCchhHHHHHHHHHhcCCcEEeecccCCHHHHhcCceEEEecCCHHHHHHHHHHHHHhcCCeEEeCCcchHHHHH
Q psy755 81 IDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAK 160 (183)
Q Consensus 81 id~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~g~~g~a~~~k 160 (183)
+|+|+..|.+.+.+.+.+.++|.+|+++|+++++..+..|++.++++|+++.+++++++|+.+|.+++++|+.|+|+.+|
T Consensus 90 vd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l~~~g~~~~~~G~~G~g~~~K 169 (292)
T PRK15059 90 VDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLVGGNGDGQTCK 169 (292)
T ss_pred EECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHHHHHcCCcEEeCCccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccC
Q psy755 161 LCNNMLLGVTMMGVAEAMNLGVK 183 (183)
Q Consensus 161 ~~~~~~~~~~~~~~~E~~~~~~~ 183 (183)
+++|++...++.+++|++.+++|
T Consensus 170 l~~N~l~~~~~~a~~Ea~~la~~ 192 (292)
T PRK15059 170 VANQIIVALNIEAVSEALLFASK 192 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999875
No 7
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-33 Score=217.45 Aligned_cols=183 Identities=36% Similarity=0.507 Sum_probs=173.1
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
||.+||.+|+++|++|++|||++++.+.+.+.|.....++.+++++||+||+++|+...++.++++..++.+.+++|+++
T Consensus 12 mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lv 91 (296)
T PRK15461 12 MGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGVCEGLSRDALV 91 (296)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEE
Confidence 89999999999999999999999999999888888888999999999999999999888999987656677788899999
Q ss_pred EeccCCCchhHHHHHHHHHhcCCcEEeecccCCHHHHhcCceEEEecCCHHHHHHHHHHHHHhcCCeEEeCCcchHHHHH
Q psy755 81 IDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAK 160 (183)
Q Consensus 81 id~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~g~~g~a~~~k 160 (183)
+|+|+..|...+.+.+.+.++|+.|+++|+++++..+..|+++++.+|+++.+++++++|+.+|.+++++|+.|+|+.+|
T Consensus 92 id~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l~~~g~~~~~~g~~G~g~~~K 171 (296)
T PRK15461 92 IDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPILMAMGNELINAGGPGMGIRVK 171 (296)
T ss_pred EECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHHHHHcCCeEeeCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccC
Q psy755 161 LCNNMLLGVTMMGVAEAMNLGVK 183 (183)
Q Consensus 161 ~~~~~~~~~~~~~~~E~~~~~~~ 183 (183)
+++|++...++..++|++.+++|
T Consensus 172 l~~N~~~~~~~~~~~Ea~~l~~~ 194 (296)
T PRK15461 172 LINNYMSIALNALSAEAAVLCEA 194 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999874
No 8
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=100.00 E-value=9.4e-34 Score=229.07 Aligned_cols=178 Identities=24% Similarity=0.345 Sum_probs=167.0
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHc----C--CcccCCHHHHhc---cCCEEEEecCChHHHHHHhcCCcccc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKE----G--ANMALSLSTLAS---GAEFIISMLPASQDVLDAYDGSDGIL 71 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~----g--~~~~~~~~~~~~---~adiVi~~vp~~~~~~~v~~~~~~l~ 71 (183)
||.+||++|+++||+|++|||++++.+.+.+. | +..+++++++++ ++|+||+++|+++.++.++ +++.
T Consensus 12 MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~~vi---~~l~ 88 (470)
T PTZ00142 12 MGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVDETI---DNLL 88 (470)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHHHHH---HHHH
Confidence 89999999999999999999999999888764 4 335778999886 4899999999999999998 8899
Q ss_pred ccCCCCcEEEeccCCCchhHHHHHHHHHhcCCcEEeecccCCHHHHhcCceEEEecCCHHHHHHHHHHHHHhcCC-----
Q psy755 72 KHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRN----- 146 (183)
Q Consensus 72 ~~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~----- 146 (183)
+.+.+|++|||+|++.+.+.....+.+.++|++|+++|++|++..++.|+ +++++|+++++++++++|+.++.+
T Consensus 89 ~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~-~lm~GG~~~a~~~~~piL~~ia~~~~~~~ 167 (470)
T PTZ00142 89 PLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGP-SLMPGGNKEAYDHVKDILEKCSAKVGDSP 167 (470)
T ss_pred hhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHHHHhhhcCCCC
Confidence 99999999999999999999999999999999999999999999999998 899999999999999999999987
Q ss_pred -eEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy755 147 -IVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGV 182 (183)
Q Consensus 147 -~~~~g~~g~a~~~k~~~~~~~~~~~~~~~E~~~~~~ 182 (183)
+.++|+.|+|+++||+||.++++.+++++|++.+++
T Consensus 168 ~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~ 204 (470)
T PTZ00142 168 CVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMK 204 (470)
T ss_pred eEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999985
No 9
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=7.8e-33 Score=213.99 Aligned_cols=179 Identities=30% Similarity=0.429 Sum_probs=167.9
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhcc---CCEEEEecCChHHHHHHhcCCccccccCCCC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASG---AEFIISMLPASQDVLDAYDGSDGILKHAKPG 77 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~ 77 (183)
||.+||++|.+.|++|++|||++++.+.+.+.|....+++++++++ +|+||+++|++..++.++ +++.+.+++|
T Consensus 11 mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~---~~i~~~l~~g 87 (299)
T PRK12490 11 MGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI---KDLYPLLSPG 87 (299)
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH---HHHhccCCCC
Confidence 7999999999999999999999999999888888888899998776 699999999987888888 7788889999
Q ss_pred cEEEeccCCCchhHHHHHHHHHhcCCcEEeecccCCHHHHhcCceEEEecCCHHHHHHHHHHHHHhcC---CeEEeCCcc
Q psy755 78 VIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGR---NIVHCGDSG 154 (183)
Q Consensus 78 ~iiid~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~---~~~~~g~~g 154 (183)
++|||+|++.|.+...+.+.+.++|++|+++|++|++..+..|. +++++|+++++++++++|+.+|. +++++|+.|
T Consensus 88 ~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~G~~g 166 (299)
T PRK12490 88 DIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGY-CLMVGGDKEIYDRLEPVFKALAPEGPGYVHAGPVG 166 (299)
T ss_pred CEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCC-eEEecCCHHHHHHHHHHHHHhcCcCCcEEEECCcC
Confidence 99999999999999999999999999999999999999999997 79999999999999999999997 789999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy755 155 NGQVAKLCNNMLLGVTMMGVAEAMNLGVK 183 (183)
Q Consensus 155 ~a~~~k~~~~~~~~~~~~~~~E~~~~~~~ 183 (183)
+|+.+|+++|++...++++++|++.+++|
T Consensus 167 ~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~ 195 (299)
T PRK12490 167 SGHFLKMVHNGIEYGMMQAYAEGLELLDK 195 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999875
No 10
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=100.00 E-value=6.1e-33 Score=224.41 Aligned_cols=178 Identities=24% Similarity=0.348 Sum_probs=164.4
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHc---C--CcccCCHHHHhc---cCCEEEEecCChHHHHHHhcCCccccc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKE---G--ANMALSLSTLAS---GAEFIISMLPASQDVLDAYDGSDGILK 72 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~---g--~~~~~~~~~~~~---~adiVi~~vp~~~~~~~v~~~~~~l~~ 72 (183)
||.+||++|+++||+|++|||++++.+.+.+. | +...+++.++++ .+|+||+++|+++.++.++ +++.+
T Consensus 10 MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~Vi---~~l~~ 86 (467)
T TIGR00873 10 MGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAVI---NQLLP 86 (467)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHHH---HHHHh
Confidence 89999999999999999999999999998875 2 455667888764 6899999999999999998 78999
Q ss_pred cCCCCcEEEeccCCCchhHHHHHHHHHhcCCcEEeecccCCHHHHhcCceEEEecCCHHHHHHHHHHHHHhcCC------
Q psy755 73 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRN------ 146 (183)
Q Consensus 73 ~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~------ 146 (183)
.+++|++|||+|++.+.+.....+.+.++|++|+++|++|++..+..|. +++++|+++++++++++|+.++.+
T Consensus 87 ~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~-~im~GG~~~a~~~~~p~L~~ia~~~~~~~~ 165 (467)
T TIGR00873 87 LLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGP-SIMPGGSAEAWPLVAPIFQKIAAKVDGEPC 165 (467)
T ss_pred hCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCC-cCCCCCCHHHHHHHHHHHHHHhhhcCCCCc
Confidence 9999999999999999999888999999999999999999999999998 899999999999999999999987
Q ss_pred eEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy755 147 IVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGV 182 (183)
Q Consensus 147 ~~~~g~~g~a~~~k~~~~~~~~~~~~~~~E~~~~~~ 182 (183)
+.++|+.|+|+++||+||.+++..+++++|++.+++
T Consensus 166 ~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~ 201 (467)
T TIGR00873 166 CTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILK 201 (467)
T ss_pred eEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999863
No 11
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=100.00 E-value=1.6e-31 Score=206.17 Aligned_cols=183 Identities=36% Similarity=0.611 Sum_probs=170.5
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
||.+||..|++.|++|++|||++++.+++.+.|....+++.+++++||+||+++|+...++.++++.+++.+.++++++|
T Consensus 10 mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~~~~~~g~ii 89 (291)
T TIGR01505 10 MGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTL 89 (291)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHhhcCCCCCEE
Confidence 89999999999999999999999999999888887788899999999999999999888888876645567778899999
Q ss_pred EeccCCCchhHHHHHHHHHhcCCcEEeecccCCHHHHhcCceEEEecCCHHHHHHHHHHHHHhcCCeEEeCCcchHHHHH
Q psy755 81 IDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAK 160 (183)
Q Consensus 81 id~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~g~~g~a~~~k 160 (183)
+|+|+..|.+.+.+.+.++++|.+|+++|+++++..+..+...++++|+++.+++++++++.+|.+++++|+.|+|+.+|
T Consensus 90 vd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~K 169 (291)
T TIGR01505 90 VDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNIVLVGGNGDGQTCK 169 (291)
T ss_pred EECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHhcCCeEEeCCCCHHHHHH
Confidence 99999999999999999999999999999999998888898899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccC
Q psy755 161 LCNNMLLGVTMMGVAEAMNLGVK 183 (183)
Q Consensus 161 ~~~~~~~~~~~~~~~E~~~~~~~ 183 (183)
+++|.+...++++++|++.++++
T Consensus 170 l~~n~~~~~~~~~~~Ea~~l~~~ 192 (291)
T TIGR01505 170 VANQIIVALNIEAVSEALVFASK 192 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999874
No 12
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=1.1e-31 Score=207.88 Aligned_cols=179 Identities=34% Similarity=0.495 Sum_probs=167.4
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhcc---CCEEEEecCChHHHHHHhcCCccccccCCCC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASG---AEFIISMLPASQDVLDAYDGSDGILKHAKPG 77 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~ 77 (183)
||.+||++|+++|++|++|||++++.+.+.+.|....+++.++++. +|+||+++|+...++.++ +++.+.+++|
T Consensus 11 MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~---~~l~~~l~~g 87 (301)
T PRK09599 11 MGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI---DELAPLLSPG 87 (301)
T ss_pred HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH---HHHHhhCCCC
Confidence 8999999999999999999999999999988888888899988875 699999999987788887 7788889999
Q ss_pred cEEEeccCCCchhHHHHHHHHHhcCCcEEeecccCCHHHHhcCceEEEecCCHHHHHHHHHHHHHhcC----CeEEeCCc
Q psy755 78 VIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGR----NIVHCGDS 153 (183)
Q Consensus 78 ~iiid~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~----~~~~~g~~ 153 (183)
+++||+|+..|.....+.+.+.++|++|+++|++|++..+..|. +++++|+++.+++++++|+.++. +++++|+.
T Consensus 88 ~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~~G~~ 166 (301)
T PRK09599 88 DIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGGVWGLERGY-CLMIGGDKEAVERLEPIFKALAPRAEDGYLHAGPV 166 (301)
T ss_pred CEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcCHHHHhcCC-eEEecCCHHHHHHHHHHHHHHcccccCCeEeECCC
Confidence 99999999999999999999999999999999999999999895 89999999999999999999998 78999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy755 154 GNGQVAKLCNNMLLGVTMMGVAEAMNLGVK 183 (183)
Q Consensus 154 g~a~~~k~~~~~~~~~~~~~~~E~~~~~~~ 183 (183)
|+|+.+|+++|.+....++.++|++.++++
T Consensus 167 G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~ 196 (301)
T PRK09599 167 GAGHFVKMVHNGIEYGMMQAYAEGFELLEA 196 (301)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999864
No 13
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=2.2e-31 Score=205.90 Aligned_cols=183 Identities=39% Similarity=0.668 Sum_probs=171.0
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
||..+|..|++.|++|++|||++++.+.+.+.|....+++.+++++||+||+++|++..++.++++.+++.+.+++|++|
T Consensus 13 mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~ii 92 (296)
T PRK11559 13 MGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVV 92 (296)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEE
Confidence 79999999999999999999999999988888887788899999999999999999888888887655677888999999
Q ss_pred EeccCCCchhHHHHHHHHHhcCCcEEeecccCCHHHHhcCceEEEecCCHHHHHHHHHHHHHhcCCeEEeCCcchHHHHH
Q psy755 81 IDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAK 160 (183)
Q Consensus 81 id~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~g~~g~a~~~k 160 (183)
+|+|+..|...+.+.+.+..+|++|+++|+++++..+..+...++++|+++.++.++++++.+|.+++++|+.|+|+.+|
T Consensus 93 id~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~K 172 (296)
T PRK11559 93 IDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTK 172 (296)
T ss_pred EECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEEeCCcCHHHHHH
Confidence 99999999999999999999999999999999999888898899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccC
Q psy755 161 LCNNMLLGVTMMGVAEAMNLGVK 183 (183)
Q Consensus 161 ~~~~~~~~~~~~~~~E~~~~~~~ 183 (183)
+++|.+...++++++|++.+|++
T Consensus 173 l~~n~~~~~~~~~~~Ea~~l~~~ 195 (296)
T PRK11559 173 LANQVIVALNIAAMSEALVLATK 195 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999874
No 14
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=1.1e-31 Score=238.79 Aligned_cols=183 Identities=27% Similarity=0.437 Sum_probs=175.8
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
||..||++|+++||+|++|||++++.+++.+.|...++++.+++++||+||+++|++.+++.++++.+++.+.+.+|+++
T Consensus 15 MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~ii 94 (1378)
T PLN02858 15 LSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVI 94 (1378)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEE
Confidence 89999999999999999999999999999999998899999999999999999999999999998877888889999999
Q ss_pred EeccCCCchhHHHHHHHHHhcC--CcEEeecccCCHHHHhcCceEEEecCCHHHHHHHHHHHHHhcCCeEE-eCCcchHH
Q psy755 81 IDSSTVDPQVPQTLSNLAREKQ--ITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVH-CGDSGNGQ 157 (183)
Q Consensus 81 id~s~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~-~g~~g~a~ 157 (183)
||+||..|...+.+.+.+.++| +.|+++|++|++..+..|+++++++|+++.+++++++|+.+|.++++ +|+.|+|+
T Consensus 95 vd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~ 174 (1378)
T PLN02858 95 LIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKLYTFEGEIGAGS 174 (1378)
T ss_pred EECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCceEEecCCCCHhH
Confidence 9999999999999999999999 89999999999999999999999999999999999999999998876 59999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccC
Q psy755 158 VAKLCNNMLLGVTMMGVAEAMNLGVK 183 (183)
Q Consensus 158 ~~k~~~~~~~~~~~~~~~E~~~~~~~ 183 (183)
.+|+++|++.+.++..++|++.+++|
T Consensus 175 ~~KL~nN~l~~~~~~a~aEAl~la~~ 200 (1378)
T PLN02858 175 KVKMVNELLEGIHLVASAEAMALGVR 200 (1378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999875
No 15
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.98 E-value=5.9e-31 Score=190.26 Aligned_cols=178 Identities=34% Similarity=0.509 Sum_probs=166.8
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHh---ccCCEEEEecCChHHHHHHhcCCccccccCCCC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLA---SGAEFIISMLPASQDVLDAYDGSDGILKHAKPG 77 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~ 77 (183)
||..|.++|.+.||+|++||+|++.++.+...++...+++.+++ ....+|++.||..+.+..++ +++.+.|.+|
T Consensus 11 MG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi---~~la~~L~~G 87 (300)
T COG1023 11 MGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI---DDLAPLLSAG 87 (300)
T ss_pred hhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH---HHHHhhcCCC
Confidence 89999999999999999999999999999999988888888775 47899999999998899998 9999999999
Q ss_pred cEEEeccCCCchhHHHHHHHHHhcCCcEEeecccCCHHHHhcCceEEEecCCHHHHHHHHHHHHHhcC---CeEEeCCcc
Q psy755 78 VIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGR---NIVHCGDSG 154 (183)
Q Consensus 78 ~iiid~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~---~~~~~g~~g 154 (183)
.+|||..++...+.....+.+.++|+||+|+.-+|++..++.|- .++++|++++++.+.++|+.+.. -+-++||.|
T Consensus 88 DivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~-~lMiGG~~~a~~~~~pif~~lA~ge~Gyl~~Gp~G 166 (300)
T COG1023 88 DIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGY-CLMIGGDEEAVERLEPIFKALAPGEDGYLYCGPSG 166 (300)
T ss_pred CEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCc-eEEecCcHHHHHHHHHHHHhhCcCcCccccccCCC
Confidence 99999999999999999999999999999999999999999885 89999999999999999999976 467899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy755 155 NGQVAKLCNNMLLGVTMMGVAEAMNLGV 182 (183)
Q Consensus 155 ~a~~~k~~~~~~~~~~~~~~~E~~~~~~ 182 (183)
++|++||+||.+++..|++++|++.+-+
T Consensus 167 sGHfvKMVHNGIEYGmM~a~aEGfelL~ 194 (300)
T COG1023 167 SGHFVKMVHNGIEYGMMQAIAEGFELLK 194 (300)
T ss_pred cchhHHHHhccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998754
No 16
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.98 E-value=1.1e-30 Score=201.85 Aligned_cols=178 Identities=27% Similarity=0.444 Sum_probs=164.0
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHh---ccCCEEEEecCChHHHHHHhcCCccccccCCCC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLA---SGAEFIISMLPASQDVLDAYDGSDGILKHAKPG 77 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~ 77 (183)
||.+||++|.++|++|.+|||++++.+.+.+.+.....++.++. ..+|+||+++|+. .++.++ +++.+.+++|
T Consensus 11 mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~---~~l~~~l~~g 86 (298)
T TIGR00872 11 MGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL---EELAPTLEKG 86 (298)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH---HHHHhhCCCC
Confidence 89999999999999999999999999999888876666776654 4689999999997 888888 7889999999
Q ss_pred cEEEeccCCCchhHHHHHHHHHhcCCcEEeecccCCHHHHhcCceEEEecCCHHHHHHHHHHHHHhcC---CeEEeCCcc
Q psy755 78 VIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGR---NIVHCGDSG 154 (183)
Q Consensus 78 ~iiid~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~---~~~~~g~~g 154 (183)
++|||+|+..|.+.....+.+.++|++|+++|++|++..+..| ..++++|+++.++.++++|+.++. ..+++|+.|
T Consensus 87 ~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G-~~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~G~~G 165 (298)
T TIGR00872 87 DIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERG-YCFMIGGDGEAFARAEPLFADVAPEEQGYLYCGPCG 165 (298)
T ss_pred CEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcC-CeeeeCCCHHHHHHHHHHHHHhcCcCCCEEEECCcc
Confidence 9999999999999999999999999999999999999999989 588999999999999999999986 578999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy755 155 NGQVAKLCNNMLLGVTMMGVAEAMNLGVK 183 (183)
Q Consensus 155 ~a~~~k~~~~~~~~~~~~~~~E~~~~~~~ 183 (183)
+++++|+++|.+....++.++|++.++++
T Consensus 166 ~~~~~K~~~n~l~~~~~~~~aE~~~l~~~ 194 (298)
T TIGR00872 166 SGHFVKMVHNGIEYGMMAAIAEGFEILRN 194 (298)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999764
No 17
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.97 E-value=1.7e-31 Score=189.49 Aligned_cols=151 Identities=41% Similarity=0.684 Sum_probs=137.7
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
||..||++|.++||+|++|||++++.+++.+.|...++++.|+++++|+||+++|++.+++.++++.. +.+.+.+|+++
T Consensus 12 mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~-i~~~l~~g~ii 90 (163)
T PF03446_consen 12 MGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGEN-ILAGLRPGKII 90 (163)
T ss_dssp HHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTT-HGGGS-TTEEE
T ss_pred HHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhH-HhhccccceEE
Confidence 89999999999999999999999999999999999999999999999999999999999999996644 89999999999
Q ss_pred EeccCCCchhHHHHHHHHHhcCCcEEeecccCCHHHHhcCceEEEecCCHHHHHHHHHHHHHhcCCeE-EeCC
Q psy755 81 IDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIV-HCGD 152 (183)
Q Consensus 81 id~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~-~~g~ 152 (183)
||+|+..|...+++.+.+.++|++|+++|++|++..+..++++++++|+++.+++++++|+.+|.+++ ++||
T Consensus 91 id~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l~~~~~~v~~~~G~ 163 (163)
T PF03446_consen 91 IDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLLEAMGKNVYHYVGP 163 (163)
T ss_dssp EE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHHHHHEEEEEEE-ES
T ss_pred EecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccCCHHHHHHHHHHHHHHhCCceeeeCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988 4575
No 18
>PLN02858 fructose-bisphosphate aldolase
Probab=99.97 E-value=5.1e-30 Score=228.12 Aligned_cols=183 Identities=30% Similarity=0.432 Sum_probs=172.8
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
||.+||.+|+++||+|++|||++++.+.+.+.|....+++.+++++||+||+|+|++++++.++++..++.+.+.+|+++
T Consensus 335 MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~iv 414 (1378)
T PLN02858 335 MGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLGAVSALPAGASI 414 (1378)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEE
Confidence 89999999999999999999999999999888887788999999999999999999999999998766778888999999
Q ss_pred EeccCCCchhHHHHHHHHHh--cCCcEEeecccCCHHHHhcCceEEEecCCHHHHHHHHHHHHHhcCCeEE-eCCcchHH
Q psy755 81 IDSSTVDPQVPQTLSNLARE--KQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVH-CGDSGNGQ 157 (183)
Q Consensus 81 id~s~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~-~g~~g~a~ 157 (183)
||+||..|...+.+.+.+.+ +|++|+++|++|++..+..|+++++++|+++.+++++++|+.+|.++++ .|+.|+|+
T Consensus 415 Vd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~~plL~~lg~~i~~~~g~~G~a~ 494 (1378)
T PLN02858 415 VLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSEKLYVIKGGCGAGS 494 (1378)
T ss_pred EECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEECCHHHHHHHHHHHHHHhCcEEEeCCCCCHHH
Confidence 99999999999999999998 8999999999999999999999999999999999999999999998877 46799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccC
Q psy755 158 VAKLCNNMLLGVTMMGVAEAMNLGVK 183 (183)
Q Consensus 158 ~~k~~~~~~~~~~~~~~~E~~~~~~~ 183 (183)
++|+++|++.+.++++++|++.+++|
T Consensus 495 ~~KL~nN~l~~~~~aa~aEal~la~k 520 (1378)
T PLN02858 495 GVKMVNQLLAGVHIASAAEAMAFGAR 520 (1378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999875
No 19
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1.5e-28 Score=189.06 Aligned_cols=178 Identities=27% Similarity=0.364 Sum_probs=163.1
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHc-----CCcccCCHHHHh---ccCCEEEEecCChHHHHHHhcCCccccc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKE-----GANMALSLSTLA---SGAEFIISMLPASQDVLDAYDGSDGILK 72 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~---~~adiVi~~vp~~~~~~~v~~~~~~l~~ 72 (183)
||..||.++.++||+|.+|+|++++.+.+.+. .+..+.+++|++ +...-|++.|..+..++.++ +++.|
T Consensus 14 MG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~~I---~~L~p 90 (473)
T COG0362 14 MGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDAVI---EQLLP 90 (473)
T ss_pred hhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHHHH---HHHHh
Confidence 89999999999999999999999999998875 245677888764 57999999998888788888 89999
Q ss_pred cCCCCcEEEeccCCCchhHHHHHHHHHhcCCcEEeecccCCHHHHhcCceEEEecCCHHHHHHHHHHHHHhcCC------
Q psy755 73 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRN------ 146 (183)
Q Consensus 73 ~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~------ 146 (183)
+|.+|++|||.+++...++....+.+.++|++|+.+.++||...+..|+ .++.+|++++.+.+.++|.++.++
T Consensus 91 ~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GP-SiMpGG~~eay~~v~pil~~IaAk~~g~pC 169 (473)
T COG0362 91 LLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGP-SIMPGGQKEAYELVAPILTKIAAKVDGEPC 169 (473)
T ss_pred hcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCC-CcCCCCCHHHHHHHHHHHHHHHhhcCCCCc
Confidence 9999999999999999888888899999999999999999999999998 899999999999999999999753
Q ss_pred eEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy755 147 IVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGV 182 (183)
Q Consensus 147 ~~~~g~~g~a~~~k~~~~~~~~~~~~~~~E~~~~~~ 182 (183)
+.++|+.|++|++||+||.+++.-|+.++|+|.+.+
T Consensus 170 c~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk 205 (473)
T COG0362 170 CTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILK 205 (473)
T ss_pred eeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999998754
No 20
>KOG2653|consensus
Probab=99.93 E-value=9.1e-26 Score=171.53 Aligned_cols=178 Identities=24% Similarity=0.333 Sum_probs=161.9
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHc---C--CcccCCHHHHh---ccCCEEEEecCChHHHHHHhcCCccccc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKE---G--ANMALSLSTLA---SGAEFIISMLPASQDVLDAYDGSDGILK 72 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~---g--~~~~~~~~~~~---~~adiVi~~vp~~~~~~~v~~~~~~l~~ 72 (183)
||..++.+.+.+||.|.+|+|+..+++++.+. | +....+++|.+ +...+|++.+..+.+++..+ +++.+
T Consensus 17 MGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~~I---~~L~p 93 (487)
T KOG2653|consen 17 MGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQFI---EELVP 93 (487)
T ss_pred hhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHHHH---HHHHh
Confidence 89999999999999999999999999988764 2 45567888874 67999999999999999998 99999
Q ss_pred cCCCCcEEEeccCCCchhHHHHHHHHHhcCCcEEeecccCCHHHHhcCceEEEecCCHHHHHHHHHHHHHhcCC------
Q psy755 73 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRN------ 146 (183)
Q Consensus 73 ~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~------ 146 (183)
+|.+|.+|||.+++...+.....+.+.++|+-|+.+.++|+++.++.|+ .++.+|++++++.++++|..+..+
T Consensus 94 ~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GP-SlMpGg~~~Awp~ik~ifq~iaakv~~~ep 172 (487)
T KOG2653|consen 94 YLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGP-SLMPGGSKEAWPHIKDIFQKIAAKVSDGEP 172 (487)
T ss_pred hcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCC-ccCCCCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999988888888888999999999999999999999998 899999999999999999998542
Q ss_pred -eEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy755 147 -IVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGV 182 (183)
Q Consensus 147 -~~~~g~~g~a~~~k~~~~~~~~~~~~~~~E~~~~~~ 182 (183)
+.++|+-|++|++||+||.+++.-|+.+.|++.+..
T Consensus 173 Cc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk 209 (487)
T KOG2653|consen 173 CCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLK 209 (487)
T ss_pred CeeeecCCCCccchhhhccCcccchHHHHHHHHHHHH
Confidence 467999999999999999999999999999998754
No 21
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.93 E-value=4.2e-25 Score=177.73 Aligned_cols=180 Identities=20% Similarity=0.205 Sum_probs=150.5
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHH-------------------cC-CcccCCHHHHhccCCEEEEecCChHH-
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAK-------------------EG-ANMALSLSTLASGAEFIISMLPASQD- 59 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~-------------------~g-~~~~~~~~~~~~~adiVi~~vp~~~~- 59 (183)
||.++|..|++.||+|++||+++++++.+.+ .| +..++++.+++++||+||+|+|.+..
T Consensus 11 ~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advvii~vpt~~~~ 90 (411)
T TIGR03026 11 VGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVIIICVPTPLKE 90 (411)
T ss_pred hhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEEEEEeCCCCCC
Confidence 7999999999999999999999999887654 12 34556778888999999999998743
Q ss_pred --------HHHHhcCCccccccCCCCcEEEeccCCCchhHHHHHHHHHhc--CCc-EEeecccCCHHHHhcCce------
Q psy755 60 --------VLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREK--QIT-FLDAPVSGGTKAAQEATL------ 122 (183)
Q Consensus 60 --------~~~v~~~~~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~--g~~-~~~~~~~~~~~~~~~~~~------ 122 (183)
+..++ +++.+.+++|++|+++|+..|.+.+.+.+.+.++ |.. +.+.++.++|+.+..|..
T Consensus 91 ~~~~d~~~v~~~~---~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~~~G~~~~~~~~ 167 (411)
T TIGR03026 91 DGSPDLSYVESAA---ETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFLREGNAVHDLLN 167 (411)
T ss_pred CCCcChHHHHHHH---HHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCcCCCCChhhhhcC
Confidence 55555 7788888999999999999999998887555443 433 455666667766666665
Q ss_pred --EEEecCCHHHHHHHHHHHHHhc-CCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy755 123 --TFMVGGDKSSLEKAKPILKCMG-RNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVK 183 (183)
Q Consensus 123 --~~~~~g~~~~~~~~~~l~~~~g-~~~~~~g~~g~a~~~k~~~~~~~~~~~~~~~E~~~~~~~ 183 (183)
.++.+++++..++++++++.++ ..++++++.++|+++|++.|.+.++++++++|+..+|++
T Consensus 168 ~~~iv~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la~~ 231 (411)
T TIGR03026 168 PDRIVGGETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARICEA 231 (411)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788899999999999999998 578889999999999999999999999999999999874
No 22
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.91 E-value=3.5e-23 Score=166.36 Aligned_cols=180 Identities=19% Similarity=0.186 Sum_probs=145.1
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcc-cCCHHHH---------------hccCCEEEEecCCh-------
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANM-ALSLSTL---------------ASGAEFIISMLPAS------- 57 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~-~~~~~~~---------------~~~adiVi~~vp~~------- 57 (183)
||.++|.+|+++||+|++||+++++++.+....... ...+++. .++||+||+|+|.+
T Consensus 14 ~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~vptp~~~~~~~ 93 (415)
T PRK11064 14 IGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAVPTPFKGDHEP 93 (415)
T ss_pred hhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEcCCCCCCCCCc
Confidence 799999999999999999999999988765332221 1122222 24799999999987
Q ss_pred --HHHHHHhcCCccccccCCCCcEEEeccCCCchhHHHHHHHHHhcCC--------------cEEeec--ccCCHHHHhc
Q psy755 58 --QDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQI--------------TFLDAP--VSGGTKAAQE 119 (183)
Q Consensus 58 --~~~~~v~~~~~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~--------------~~~~~~--~~~~~~~~~~ 119 (183)
..+..++ +++.+.+++|++||+.|+..|.+.+.+...+.+.+. ++..+| +.+|......
T Consensus 94 dl~~v~~~~---~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~PE~~~~G~~~~~~ 170 (415)
T PRK11064 94 DLTYVEAAA---KSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYCPERVLPGQVMVEL 170 (415)
T ss_pred ChHHHHHHH---HHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEECCCccCCCChhhhh
Confidence 5666665 788899999999999999999999999887776532 345666 5555444444
Q ss_pred CceEEEecC-CHHHHHHHHHHHHHhcCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy755 120 ATLTFMVGG-DKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVK 183 (183)
Q Consensus 120 ~~~~~~~~g-~~~~~~~~~~l~~~~g~~~~~~g~~g~a~~~k~~~~~~~~~~~~~~~E~~~~~~~ 183 (183)
.....+++| +++..++++++++.++..++++++.++|+++|++.|.+.++++++++|+..+|++
T Consensus 171 ~~~~~vvgG~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~lae~ 235 (415)
T PRK11064 171 IKNDRVIGGMTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICAD 235 (415)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566787 9999999999999999888889999999999999999999999999999999874
No 23
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.91 E-value=3.2e-23 Score=162.08 Aligned_cols=174 Identities=21% Similarity=0.321 Sum_probs=142.2
Q ss_pred cHHHHHHHHhCCCcEEEEcCCch-----hHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCC
Q psy755 2 GSHMARNLLKNGHDVIVYDKNTD-----ASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 76 (183)
Q Consensus 2 G~~iA~~l~~~g~~V~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~ 76 (183)
|.+||.+|+++||+|++|||+++ +.+.+...|+....++.+++++||+||+++|.+..++.++ +++.+.+++
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl---~~L~~~L~~ 108 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA---KNILPHLPE 108 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH---HHHHhhCCC
Confidence 78999999999999999999987 4455666788777788899999999999999877688887 788899999
Q ss_pred CcEEEeccCCCchhH-HHHHHHHH----hcCCcEEe-ecccCCHHHHhcCceEEEecC--------CHHHHHHHHHHHHH
Q psy755 77 GVIVIDSSTVDPQVP-QTLSNLAR----EKQITFLD-APVSGGTKAAQEATLTFMVGG--------DKSSLEKAKPILKC 142 (183)
Q Consensus 77 ~~iiid~s~~~~~~~-~~~~~~~~----~~g~~~~~-~~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~~~l~~~ 142 (183)
+++|+|+|+..+... +.+.+.+. ..|+++.+ .++.+++. +...++.++ +++.+++++++|++
T Consensus 109 g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~----g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a 184 (342)
T PRK12557 109 NAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTPQ----HGHYVIAGKTTNGTELATEEQIEKCVELAES 184 (342)
T ss_pred CCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCcccccccc----chheEEeCCCcccccCCCHHHHHHHHHHHHH
Confidence 999999999998877 56666664 23554443 33444432 333555544 88999999999999
Q ss_pred hcCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy755 143 MGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVK 183 (183)
Q Consensus 143 ~g~~~~~~g~~g~a~~~k~~~~~~~~~~~~~~~E~~~~~~~ 183 (183)
+|.++++++ .|.+..+|+++|++.++++++.+|++.+++|
T Consensus 185 ~G~~v~~~~-~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~ 224 (342)
T PRK12557 185 IGKEPYVVP-ADVVSAVADMGSLVTAVALSGVLDYYSVGTK 224 (342)
T ss_pred cCCEEEEeC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887777 5999999999999999999999999999864
No 24
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.89 E-value=2.4e-22 Score=161.63 Aligned_cols=181 Identities=18% Similarity=0.177 Sum_probs=139.2
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCc----------------ccCCHHHHhccCCEEEEecCCh------H
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGAN----------------MALSLSTLASGAEFIISMLPAS------Q 58 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~----------------~~~~~~~~~~~adiVi~~vp~~------~ 58 (183)
||..+|.+|++ ||+|++||+++++++.+. .|.. ..++..+.+++||++|+|||.+ .
T Consensus 17 vGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~Vptp~~~~~~~ 94 (425)
T PRK15182 17 VGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITVPTPINTYKQP 94 (425)
T ss_pred chHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEcCCCCCCCCCc
Confidence 89999999887 699999999999999988 3322 2334455789999999999988 3
Q ss_pred HHHHHhcCCccccccCCCCcEEEeccCCCchhHHHHHHHHHhc--CCcEEe------e--cccCCHHHHhcCce-EEEec
Q psy755 59 DVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREK--QITFLD------A--PVSGGTKAAQEATL-TFMVG 127 (183)
Q Consensus 59 ~~~~v~~~~~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~--g~~~~~------~--~~~~~~~~~~~~~~-~~~~~ 127 (183)
+++.++++.+++.+.+++|++||+.||+.|.+.+.+.+...++ |..+.+ + ++.+|.......+. .++.|
T Consensus 95 dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~~~~~~riv~G 174 (425)
T PRK15182 95 DLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHRLTNIKKITSG 174 (425)
T ss_pred chHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcccccccCCCeEEEC
Confidence 4456655557888999999999999999999998765444333 555443 2 23334332222222 25556
Q ss_pred CCHHHHHHHHHHHHHhc-CCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy755 128 GDKSSLEKAKPILKCMG-RNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVK 183 (183)
Q Consensus 128 g~~~~~~~~~~l~~~~g-~~~~~~g~~g~a~~~k~~~~~~~~~~~~~~~E~~~~~~~ 183 (183)
.+++..+.++++++.+. ..++++++.+.|+++|+++|.+.++++++++|+..+|++
T Consensus 175 ~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~ 231 (425)
T PRK15182 175 STAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNR 231 (425)
T ss_pred CCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888889999999986 457888999999999999999999999999999999874
No 25
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.89 E-value=4.7e-22 Score=158.30 Aligned_cols=171 Identities=18% Similarity=0.253 Sum_probs=138.7
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHH----------------cCCcc--cCCHHHHhccCCEEEEecCCh-----
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAK----------------EGANM--ALSLSTLASGAEFIISMLPAS----- 57 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~----------------~g~~~--~~~~~~~~~~adiVi~~vp~~----- 57 (183)
||..+|..|+. ||+|++||+++++++.+.+ .+... ..+..+++.+||+||+|+|.+
T Consensus 11 vGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii~Vpt~~~~k~ 89 (388)
T PRK15057 11 VGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVIIATPTDYDPKT 89 (388)
T ss_pred HHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEEeCCCCCccCC
Confidence 79999988875 9999999999999988876 22223 233667789999999999987
Q ss_pred -----HHHHHHhcCCccccccCCCCcEEEeccCCCchhHHHHHHHHHhcCCcEEeecccCCHHHHhcCce--------EE
Q psy755 58 -----QDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATL--------TF 124 (183)
Q Consensus 58 -----~~~~~v~~~~~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~ 124 (183)
..++.++ +++.+ +++|++||+.||+.|.+.+.+.+.+.+.++.| .|+....|++ .+
T Consensus 90 ~~~dl~~v~~v~---~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~-------~PE~l~~G~a~~d~~~p~rv 158 (388)
T PRK15057 90 NYFNTSSVESVI---KDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENIIF-------SPEFLREGKALYDNLHPSRI 158 (388)
T ss_pred CCcChHHHHHHH---HHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEEE-------CcccccCCcccccccCCCEE
Confidence 5666666 67766 68999999999999999999998877655443 4555666666 77
Q ss_pred EecCCHHHHHHHHHHHHH--hcCCeE-EeCCcchHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy755 125 MVGGDKSSLEKAKPILKC--MGRNIV-HCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVK 183 (183)
Q Consensus 125 ~~~g~~~~~~~~~~l~~~--~g~~~~-~~g~~g~a~~~k~~~~~~~~~~~~~~~E~~~~~~~ 183 (183)
+.|++++..+++.+++.. ++..+. ++++.++|+++|++.|.+.++++++++|+..+|++
T Consensus 159 v~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~ 220 (388)
T PRK15057 159 VIGERSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAES 220 (388)
T ss_pred EEEcCcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888878888888865 565444 68999999999999999999999999999999874
No 26
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.82 E-value=1.8e-18 Score=132.47 Aligned_cols=168 Identities=20% Similarity=0.306 Sum_probs=130.0
Q ss_pred CcHHHHHHHHhCCC--cEEEEcCCchhHHHHHHcCCc-ccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCC
Q psy755 1 MGSHMARNLLKNGH--DVIVYDKNTDASQTLAKEGAN-MALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPG 77 (183)
Q Consensus 1 mG~~iA~~l~~~g~--~V~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~ 77 (183)
||+++|..|.+.|+ +|++|||++++.+.+.+.|.. ...++.++. ++|+||+|+|+.. +..++ +++.+ ++++
T Consensus 11 mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~-~~~~~---~~l~~-l~~~ 84 (275)
T PRK08507 11 MGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDA-IIEIL---PKLLD-IKEN 84 (275)
T ss_pred HHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHH-HHHHH---HHHhc-cCCC
Confidence 79999999999996 789999999998888877764 345666755 5999999999855 55565 78888 8899
Q ss_pred cEEEeccCCCchhHHHHHHHHHhcCCcEEe-ecccCC----HHHHh----cCceEEEec---CCHHHHHHHHHHHHHhcC
Q psy755 78 VIVIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGG----TKAAQ----EATLTFMVG---GDKSSLEKAKPILKCMGR 145 (183)
Q Consensus 78 ~iiid~s~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~----~~~~~----~~~~~~~~~---g~~~~~~~~~~l~~~~g~ 145 (183)
++|+|++++++.....+.+. .+..|+. ||+.|+ +..+. .+..+++++ ++++.++.++++|+.+|.
T Consensus 85 ~iv~d~gs~k~~i~~~~~~~---~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~v~~l~~~~G~ 161 (275)
T PRK08507 85 TTIIDLGSTKAKIIESVPKH---IRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQERAKEIFSGLGM 161 (275)
T ss_pred CEEEECccchHHHHHHHHHh---cCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHhCC
Confidence 99999988777666555443 2346788 599874 44332 466666765 466788999999999999
Q ss_pred CeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q psy755 146 NIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAM 178 (183)
Q Consensus 146 ~~~~~g~~g~a~~~k~~~~~~~~~~~~~~~E~~ 178 (183)
+++++++.+....+++++++.+. ...++++++
T Consensus 162 ~~~~~~~~~hD~~~a~vs~lph~-~a~~l~~~~ 193 (275)
T PRK08507 162 RIVYMDAKEHDLHAAYISHLPHI-ISFALANTV 193 (275)
T ss_pred EEEEeCHHHHHHHHHHHhHHHHH-HHHHHHHHH
Confidence 99999999999999999999873 444444443
No 27
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.82 E-value=2.3e-19 Score=137.68 Aligned_cols=167 Identities=16% Similarity=0.272 Sum_probs=131.0
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCc-ccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGAN-MALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 79 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~i 79 (183)
||+++|..|.++|++|++||+++++.+.+.+.|.. ...+..+.+.++|+||+|+|... +..++ +++.+.++++.+
T Consensus 11 mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~-~~~~~---~~l~~~l~~~~i 86 (279)
T PRK07417 11 IGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGL-LLPPS---EQLIPALPPEAI 86 (279)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHH-HHHHH---HHHHHhCCCCcE
Confidence 79999999999999999999999999888887753 23233456789999999999754 55565 788888889999
Q ss_pred EEeccCCCchhHHHHHHHHHhcCCcEEe-ecccCCH-HHHh-------cCceEEEec---CCHHHHHHHHHHHHHhcCCe
Q psy755 80 VIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGT-KAAQ-------EATLTFMVG---GDKSSLEKAKPILKCMGRNI 147 (183)
Q Consensus 80 iid~s~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~-~~~~-------~~~~~~~~~---g~~~~~~~~~~l~~~~g~~~ 147 (183)
|+|+++.++.....+.+. ...|+. |||+|++ .... .+...+++. ++++.++.++++++.+|.++
T Consensus 87 i~d~~Svk~~~~~~~~~~----~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~~l~~~lG~~~ 162 (279)
T PRK07417 87 VTDVGSVKAPIVEAWEKL----HPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIVEELAVSLGSKI 162 (279)
T ss_pred EEeCcchHHHHHHHHHHh----hCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHHHHHHHHcCCEE
Confidence 999999887776555443 235787 8999865 2222 244344443 47788899999999999999
Q ss_pred EEeCCcchHHHHHHHHHHHHHHHHHHHH
Q psy755 148 VHCGDSGNGQVAKLCNNMLLGVTMMGVA 175 (183)
Q Consensus 148 ~~~g~~g~a~~~k~~~~~~~~~~~~~~~ 175 (183)
+++++.+....+++++++......+.++
T Consensus 163 v~~~~~~hD~~~a~~shlp~~~a~~l~~ 190 (279)
T PRK07417 163 YTADPEEHDRAVALISHLPVMVSAALIQ 190 (279)
T ss_pred EEcCHHHHHHHHHHHcchHHHHHHHHHH
Confidence 9999999999999999988877765543
No 28
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.80 E-value=6.4e-19 Score=137.93 Aligned_cols=179 Identities=20% Similarity=0.304 Sum_probs=136.9
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcC--------------CcccCCHHHHhccCCEEEEecCChHHHHHHhcC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEG--------------ANMALSLSTLASGAEFIISMLPASQDVLDAYDG 66 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g--------------~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~ 66 (183)
||..+|..|++.|++|.+|+|++++.+.+.+.+ .....++.+.++++|+||+|+|+ ..++.++
T Consensus 12 mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~-~~~~~v~-- 88 (325)
T PRK00094 12 WGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS-QALREVL-- 88 (325)
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH-HHHHHHH--
Confidence 799999999999999999999999888887652 34456777888899999999998 5678887
Q ss_pred CccccccCCCCcEEEecc-CCCchhHHHHHHHHHhc-----CCcEEeecccCCHHHHhcCceEEEecCCHHHHHHHHHHH
Q psy755 67 SDGILKHAKPGVIVIDSS-TVDPQVPQTLSNLAREK-----QITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPIL 140 (183)
Q Consensus 67 ~~~l~~~l~~~~iiid~s-~~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 140 (183)
+++.+.+.+++++++++ +..+.....+.+.+.+. ...++..|..........+...++.+++.+.++.++++|
T Consensus 89 -~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l 167 (325)
T PRK00094 89 -KQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIASTDEELAERVQELF 167 (325)
T ss_pred -HHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEeCCHHHHHHHHHHh
Confidence 78888888999999998 55555444555555543 223444554433333334455666777889999999999
Q ss_pred HHhcCCeEEeCCc-----------------chHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy755 141 KCMGRNIVHCGDS-----------------GNGQVAKLCNNMLLGVTMMGVAEAMNLGVK 183 (183)
Q Consensus 141 ~~~g~~~~~~g~~-----------------g~a~~~k~~~~~~~~~~~~~~~E~~~~~~~ 183 (183)
+..|.++++.++. |.+..+|+.+|.+.......++|++.+|++
T Consensus 168 ~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~ 227 (325)
T PRK00094 168 HSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVA 227 (325)
T ss_pred CCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHH
Confidence 9999877665542 666778999999999999999999999864
No 29
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.80 E-value=2.1e-18 Score=137.10 Aligned_cols=156 Identities=13% Similarity=0.160 Sum_probs=125.5
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
||+++|+.|.++|++|++||+++. ++..+++++||+||+|+|... ...++ +++.+ +++|++|
T Consensus 110 mG~slA~~l~~~G~~V~~~d~~~~-------------~~~~~~~~~aDlVilavP~~~-~~~~~---~~l~~-l~~~~iv 171 (374)
T PRK11199 110 LGRLFAKMLTLSGYQVRILEQDDW-------------DRAEDILADAGMVIVSVPIHL-TEEVI---ARLPP-LPEDCIL 171 (374)
T ss_pred hhHHHHHHHHHCCCeEEEeCCCcc-------------hhHHHHHhcCCEEEEeCcHHH-HHHHH---HHHhC-CCCCcEE
Confidence 899999999999999999998642 256677889999999999865 45555 77888 8999999
Q ss_pred EeccCCCchhHHHHHHHHHhcCCcEE-eecccCCHHHHhcCceEEEecC-CHHHHHHHHHHHHHhcCCeEEeCCcchHHH
Q psy755 81 IDSSTVDPQVPQTLSNLAREKQITFL-DAPVSGGTKAAQEATLTFMVGG-DKSSLEKAKPILKCMGRNIVHCGDSGNGQV 158 (183)
Q Consensus 81 id~s~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~l~~~~g~~~~~~g~~g~a~~ 158 (183)
+|++|+++.....+.+... ..|+ .|||+|.......+..++++++ +++.++.+.++++.+|.+++++++.+....
T Consensus 172 ~Dv~SvK~~~~~~~~~~~~---~~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~~ 248 (374)
T PRK11199 172 VDLTSVKNAPLQAMLAAHS---GPVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLEQIQVWGARLHRISAVEHDQN 248 (374)
T ss_pred EECCCccHHHHHHHHHhCC---CCEEeeCCCCCCCCcccCCCEEEEcCCCCchHHHHHHHHHHHCCCEEEECCHHHHHHH
Confidence 9999999888777766532 2588 5999997655455666666666 567788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q psy755 159 AKLCNNMLLGVTMMGVAEAMNL 180 (183)
Q Consensus 159 ~k~~~~~~~~~~~~~~~E~~~~ 180 (183)
+++++.+ .|+.+.+++..+
T Consensus 249 ~a~vshL---pH~~a~al~~~l 267 (374)
T PRK11199 249 MAFIQAL---RHFATFAYGLHL 267 (374)
T ss_pred HHHHHHH---HHHHHHHHHHHH
Confidence 9999955 555555555544
No 30
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.79 E-value=4.5e-18 Score=132.28 Aligned_cols=168 Identities=16% Similarity=0.232 Sum_probs=124.6
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH-----------HcC-------------CcccCCHHHHhccCCEEEEecCC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA-----------KEG-------------ANMALSLSTLASGAEFIISMLPA 56 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~-----------~~g-------------~~~~~~~~~~~~~adiVi~~vp~ 56 (183)
||.+||..|+++|++|++||++++..+++. +.| +....++.+++++||+|++++|.
T Consensus 13 mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ad~Vi~avpe 92 (308)
T PRK06129 13 IGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVADADYVQESAPE 92 (308)
T ss_pred HHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCCCCEEEECCcC
Confidence 799999999999999999999998776532 333 24567888888999999999999
Q ss_pred hHHHHHHhcCCccccccCCCCcEEEeccCCCchhHHHHHHHHHhcCCcEEeecccCCHHHHhcCceEEEec---CCHHHH
Q psy755 57 SQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVG---GDKSSL 133 (183)
Q Consensus 57 ~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~ 133 (183)
..+.+..++ ..+.+..++ ..++. |++++.....+.+.+...+..+.+||+.+... .+++.+++ ++++.+
T Consensus 93 ~~~~k~~~~--~~l~~~~~~-~~ii~-ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~----~~lveiv~~~~t~~~~~ 164 (308)
T PRK06129 93 NLELKRALF--AELDALAPP-HAILA-SSTSALLASAFTEHLAGRERCLVAHPINPPYL----IPVVEVVPAPWTAPATL 164 (308)
T ss_pred CHHHHHHHH--HHHHHhCCC-cceEE-EeCCCCCHHHHHHhcCCcccEEEEecCCCccc----CceEEEeCCCCCCHHHH
Confidence 877766665 456555544 44454 44445556677777766677788899976321 12456665 899999
Q ss_pred HHHHHHHHHhcCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy755 134 EKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVK 183 (183)
Q Consensus 134 ~~~~~l~~~~g~~~~~~g~~g~a~~~k~~~~~~~~~~~~~~~E~~~~~~~ 183 (183)
+.++++++.+|++++++++.+.|+.+ +++ .+..++|++.++++
T Consensus 165 ~~~~~~~~~lG~~~v~v~~~~~G~i~---nrl----~~a~~~EA~~l~~~ 207 (308)
T PRK06129 165 ARAEALYRAAGQSPVRLRREIDGFVL---NRL----QGALLREAFRLVAD 207 (308)
T ss_pred HHHHHHHHHcCCEEEEecCCCccHHH---HHH----HHHHHHHHHHHHHc
Confidence 99999999999999999987888743 332 33678888887654
No 31
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.78 E-value=2e-18 Score=135.44 Aligned_cols=175 Identities=15% Similarity=0.204 Sum_probs=135.0
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHc--------C------CcccCCHHHHhccCCEEEEecCChHHHHHHhcC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKE--------G------ANMALSLSTLASGAEFIISMLPASQDVLDAYDG 66 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~--------g------~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~ 66 (183)
||.+||..|+++||+|++|+|++++.+.+.+. + +...+++.++++++|+||+++|.. .++.++
T Consensus 15 mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~~~-~~~~v~-- 91 (328)
T PRK14618 15 WGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVPSK-ALRETL-- 91 (328)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECchH-HHHHHH--
Confidence 89999999999999999999999988877754 2 234567888889999999999985 456664
Q ss_pred CccccccCCCCcEEEeccCC-Cchh--HHHHHHHHHh---cCCcEEeecccCCHHHHhcCceEEEecCCHHHHHHHHHHH
Q psy755 67 SDGILKHAKPGVIVIDSSTV-DPQV--PQTLSNLARE---KQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPIL 140 (183)
Q Consensus 67 ~~~l~~~l~~~~iiid~s~~-~~~~--~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 140 (183)
+.++++.+++++++. .+.. ...+.+.+.+ .++.++..|..........+...++.+++++.++.++++|
T Consensus 92 -----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~~~~~~~~~~~v~~ll 166 (328)
T PRK14618 92 -----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVVASPEPGLARRVQAAF 166 (328)
T ss_pred -----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEEEeCCHHHHHHHHHHh
Confidence 445678899999984 5443 4566666655 5555666554443333333666778899999999999999
Q ss_pred HHhcCCeEE--------eCC---------cchHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy755 141 KCMGRNIVH--------CGD---------SGNGQVAKLCNNMLLGVTMMGVAEAMNLGVK 183 (183)
Q Consensus 141 ~~~g~~~~~--------~g~---------~g~a~~~k~~~~~~~~~~~~~~~E~~~~~~~ 183 (183)
+..|.+++. .+. .|.+..+|+.+|........+++|++.++++
T Consensus 167 ~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~ 226 (328)
T PRK14618 167 SGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVA 226 (328)
T ss_pred CCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHH
Confidence 999987763 443 4788889999999999999999999998763
No 32
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.78 E-value=1.9e-17 Score=126.10 Aligned_cols=147 Identities=18% Similarity=0.246 Sum_probs=112.4
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchhH-----HHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCC
Q psy755 2 GSHMARNLLKNGHDVIVYDKNTDAS-----QTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 76 (183)
Q Consensus 2 G~~iA~~l~~~g~~V~~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~ 76 (183)
|.+||++|+++||+|++|||++++. +.+.+.|+..++++.++++++|+||+++|++++++.++ .++.+.+++
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl---~GLaa~L~~ 108 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA---RTIIEHVPE 108 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH---HHHHhcCCC
Confidence 7899999999999999999987654 45777798888899999999999999999999999987 678889999
Q ss_pred CcEEEeccCCCchhHHHHHHH---HHhcCC---cEEeecccCCHHH---HhcCceEEEe-cCCHHHHHHHHHHHHHhcCC
Q psy755 77 GVIVIDSSTVDPQVPQTLSNL---AREKQI---TFLDAPVSGGTKA---AQEATLTFMV-GGDKSSLEKAKPILKCMGRN 146 (183)
Q Consensus 77 ~~iiid~s~~~~~~~~~~~~~---~~~~g~---~~~~~~~~~~~~~---~~~~~~~~~~-~g~~~~~~~~~~l~~~~g~~ 146 (183)
|++|||+||..|.......+. ..++.+ .|..+.+.+.+.. ...|....-. -.+++..+++.++.++.++.
T Consensus 109 GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~ 188 (341)
T TIGR01724 109 NAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQHGHYVIGGKPTAGKEMATEEQISKCVELAKSTGKK 188 (341)
T ss_pred CCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCCceeeeccccccccccCCHHHHHHHHHHHHHhCCC
Confidence 999999999999988777765 333322 2333445554322 1112111111 14788899999999999998
Q ss_pred eEEeC
Q psy755 147 IVHCG 151 (183)
Q Consensus 147 ~~~~g 151 (183)
++.+-
T Consensus 189 ~~~~p 193 (341)
T TIGR01724 189 AYVVP 193 (341)
T ss_pred eeecc
Confidence 77654
No 33
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.78 E-value=4.8e-18 Score=131.00 Aligned_cols=166 Identities=18% Similarity=0.282 Sum_probs=123.8
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHc------------------------CCcccCCHHHHhccCCEEEEecCC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKE------------------------GANMALSLSTLASGAEFIISMLPA 56 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~------------------------g~~~~~~~~~~~~~adiVi~~vp~ 56 (183)
||.+||..|+++|++|++||+++++++++.+. ++..++++.+.+++||+||+|+|.
T Consensus 12 mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~aD~Vi~avpe 91 (288)
T PRK09260 12 MGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVADADLVIEAVPE 91 (288)
T ss_pred HHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcCCCEEEEeccC
Confidence 79999999999999999999999988775421 123456788889999999999999
Q ss_pred hHHHHHHhcCCccccccCCCCcEE-EeccCCCchhHHHHHHHHHh-cCCcEEeecccCCHHHHhcCceEEEecC---CHH
Q psy755 57 SQDVLDAYDGSDGILKHAKPGVIV-IDSSTVDPQVPQTLSNLARE-KQITFLDAPVSGGTKAAQEATLTFMVGG---DKS 131 (183)
Q Consensus 57 ~~~~~~v~~~~~~l~~~l~~~~ii-id~s~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~ 131 (183)
+..++..++ .++.+.+++++++ +++|+..+...........+ .|.||+ .|+.++ +++.++++ +++
T Consensus 92 ~~~~k~~~~--~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~-~Pv~~~-------~Lve~v~g~~t~~~ 161 (288)
T PRK09260 92 KLELKKAVF--ETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFF-NPVHKM-------KLVELIRGLETSDE 161 (288)
T ss_pred CHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecC-CCcccC-------ceEEEeCCCCCCHH
Confidence 988877665 5677888888876 67777777654333322111 377777 566553 46778887 899
Q ss_pred HHHHHHHHHHHhcCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy755 132 SLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEA 177 (183)
Q Consensus 132 ~~~~~~~l~~~~g~~~~~~g~~g~a~~~k~~~~~~~~~~~~~~~E~ 177 (183)
.++.++++++.+|++++++++ ..+.....+.-.+....+..+.|+
T Consensus 162 ~~~~~~~~l~~lg~~~v~v~d-~~Gf~~nRl~~~~~~ea~~~~~~g 206 (288)
T PRK09260 162 TVQVAKEVAEQMGKETVVVNE-FPGFVTSRISALVGNEAFYMLQEG 206 (288)
T ss_pred HHHHHHHHHHHcCCeEEEecC-cccHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999985 346666666655555555555544
No 34
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.77 E-value=2.7e-17 Score=133.13 Aligned_cols=164 Identities=18% Similarity=0.307 Sum_probs=130.2
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH-HcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA-KEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 79 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~i 79 (183)
||+++|..|.+.|++|++|+|++++..... +.|+...+++.+.+.++|+||+|+|.. .+..++ +++.+.++++++
T Consensus 12 mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~-~~~~vl---~~l~~~l~~~~i 87 (437)
T PRK08655 12 LGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPIN-VTEDVI---KEVAPHVKEGSL 87 (437)
T ss_pred HHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHH-HHHHHH---HHHHhhCCCCCE
Confidence 789999999999999999999998764443 447766778888899999999999984 456776 888899999999
Q ss_pred EEeccCCCchhHHHHHHHHHhcCCcEEe-ecccCCHHHHhcCceEEEecC---CHHHHHHHHHHHHHhcCCeEEeCCcch
Q psy755 80 VIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGTKAAQEATLTFMVGG---DKSSLEKAKPILKCMGRNIVHCGDSGN 155 (183)
Q Consensus 80 iid~s~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~l~~~~g~~~~~~g~~g~ 155 (183)
|+|++++++.....+.+.++ .+..|+. |||+|.......+..++++.+ +++.++.++++|+.+|.+++++++...
T Consensus 88 ViDvsSvK~~~~~~l~~~~~-~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ll~~~G~~v~~~~~e~H 166 (437)
T PRK08655 88 LMDVTSVKERPVEAMEEYAP-EGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKNFLEKEGARVIVTSPEEH 166 (437)
T ss_pred EEEcccccHHHHHHHHHhcC-CCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHH
Confidence 99999999888887777653 4778888 699885444445666676654 577889999999999999999998766
Q ss_pred HHHHHHHHHHHHHH
Q psy755 156 GQVAKLCNNMLLGV 169 (183)
Q Consensus 156 a~~~k~~~~~~~~~ 169 (183)
...+-.++......
T Consensus 167 D~~~a~vs~lph~~ 180 (437)
T PRK08655 167 DRIMSVVQGLTHFA 180 (437)
T ss_pred HHHHHHHHHHHHHH
Confidence 66665555544443
No 35
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.76 E-value=3.3e-17 Score=124.36 Aligned_cols=166 Identities=19% Similarity=0.319 Sum_probs=123.5
Q ss_pred HHHHHHhCC--CcEEEEcCCchhHHHHHHcCCccc-CCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEE
Q psy755 5 MARNLLKNG--HDVIVYDKNTDASQTLAKEGANMA-LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVI 81 (183)
Q Consensus 5 iA~~l~~~g--~~V~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iii 81 (183)
||+.|.+.| ++|++||++++..+.+.+.|+... .+..+.+.++|+||+|+|. ..+..++ +++.+.++++++|+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~-~~~~~~l---~~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPV-SAIEDVL---EEIAPYLKPGAIVT 76 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-H-HHHHHHH---HHHHCGS-TTSEEE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCH-HHHHHHH---HHhhhhcCCCcEEE
Confidence 688899999 589999999999999988887543 2336788999999999987 4567777 89999999999999
Q ss_pred eccCCCchhHHHHHHHHHhcCCcEEe-ecccCC----HHHHh----cCceEEEecC---CHHHHHHHHHHHHHhcCCeEE
Q psy755 82 DSSTVDPQVPQTLSNLAREKQITFLD-APVSGG----TKAAQ----EATLTFMVGG---DKSSLEKAKPILKCMGRNIVH 149 (183)
Q Consensus 82 d~s~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~----~~~~~----~~~~~~~~~g---~~~~~~~~~~l~~~~g~~~~~ 149 (183)
|.++++......+.+... .+..|+. |||+|. +..+. .|..++++.. +.+.++.+.++++.+|.++++
T Consensus 77 Dv~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~ 155 (258)
T PF02153_consen 77 DVGSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGARVVE 155 (258)
T ss_dssp E--S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE
T ss_pred EeCCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEE
Confidence 999999999888887766 6778888 899996 22222 4776777744 457889999999999999999
Q ss_pred eCCcchHHHHHHHHHHHHHHHHHHHH
Q psy755 150 CGDSGNGQVAKLCNNMLLGVTMMGVA 175 (183)
Q Consensus 150 ~g~~g~a~~~k~~~~~~~~~~~~~~~ 175 (183)
+.+...-..+..++.+-.....+...
T Consensus 156 ~~~eeHD~~~A~vshlpH~~a~al~~ 181 (258)
T PF02153_consen 156 MDAEEHDRIMAYVSHLPHLLASALAN 181 (258)
T ss_dssp --HHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888888887766666555544
No 36
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.75 E-value=9e-17 Score=122.41 Aligned_cols=171 Identities=18% Similarity=0.290 Sum_probs=135.3
Q ss_pred CcHHHHHHHHhCCCcEEEE--cCCchhHHHHHHcCCccc--CCH-HHHhccCCEEEEecCChHHHHHHhcCCccccccCC
Q psy755 1 MGSHMARNLLKNGHDVIVY--DKNTDASQTLAKEGANMA--LSL-STLASGAEFIISMLPASQDVLDAYDGSDGILKHAK 75 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~--~~~~~~~~~~~~~g~~~~--~~~-~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~ 75 (183)
||+++|+.|.+.|+.|.+| |++.+..+.....|+... .+. .+.+..+|+||++||-.. +..++ +++.+.++
T Consensus 14 iG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~-~~~~l---~~l~~~l~ 89 (279)
T COG0287 14 MGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEA-TEEVL---KELAPHLK 89 (279)
T ss_pred HHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHH-HHHHH---HHhcccCC
Confidence 8999999999999987665 555556666666676442 333 567788999999999855 56666 89999999
Q ss_pred CCcEEEeccCCCchhHHHHHHHHHhcCCcEEe-ecccCCH--HHHhcCceEEEecC---CHHHHHHHHHHHHHhcCCeEE
Q psy755 76 PGVIVIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGT--KAAQEATLTFMVGG---DKSSLEKAKPILKCMGRNIVH 149 (183)
Q Consensus 76 ~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~--~~~~~~~~~~~~~g---~~~~~~~~~~l~~~~g~~~~~ 149 (183)
+|.+|+|.++.+.....++.+..++.. +|+. |||+|+. ...-++..++++.. +.+.++++.++|+.+|.++++
T Consensus 90 ~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~~~~~~~~ga~~v~ 168 (279)
T COG0287 90 KGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVEEVKRLWEALGARLVE 168 (279)
T ss_pred CCCEEEecccccHHHHHHHHHhccCCC-eeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 999999999999999999998887766 8888 8999983 33335666677654 356789999999999999999
Q ss_pred eCCcchHHHHHHHHHHHHHHHHHHHHH
Q psy755 150 CGDSGNGQVAKLCNNMLLGVTMMGVAE 176 (183)
Q Consensus 150 ~g~~g~a~~~k~~~~~~~~~~~~~~~E 176 (183)
+.+...-..+-.++..-....++...-
T Consensus 169 ~~~eeHD~~~a~vshLpH~~a~al~~~ 195 (279)
T COG0287 169 MDAEEHDRVMAAVSHLPHAAALALANA 195 (279)
T ss_pred cChHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 999888888888887777666655443
No 37
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.75 E-value=2.1e-17 Score=135.84 Aligned_cols=166 Identities=25% Similarity=0.316 Sum_probs=123.4
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHH-------------------cC-CcccCCHHHHhccCCEEEEecCChHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAK-------------------EG-ANMALSLSTLASGAEFIISMLPASQDV 60 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~-------------------~g-~~~~~~~~~~~~~adiVi~~vp~~~~~ 60 (183)
||.+||.+|+++|++|++||+++++.+.+.+ .+ +...+++.+++++||+|++++|+..++
T Consensus 15 MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~Vieavpe~~~v 94 (495)
T PRK07531 15 IGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWIQESVPERLDL 94 (495)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEEEEcCcCCHHH
Confidence 8999999999999999999999998765421 12 556778889999999999999999888
Q ss_pred HHHhcCCccccccCCCCcEEEeccCCCchhHHHHHHHHHhcCCcEEeecccCCHHHHhcCceEEEecCC---HHHHHHHH
Q psy755 61 LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGD---KSSLEKAK 137 (183)
Q Consensus 61 ~~v~~~~~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~ 137 (183)
+..++ .++.+.++++. |+++|++.+... .+.+.+...+..++.||..+. ..++++.+++|+ ++.++.++
T Consensus 95 k~~l~--~~l~~~~~~~~-iI~SsTsgi~~s-~l~~~~~~~~r~~~~hP~nP~----~~~~Lvevv~g~~t~~e~~~~~~ 166 (495)
T PRK07531 95 KRRVL--AEIDAAARPDA-LIGSSTSGFLPS-DLQEGMTHPERLFVAHPYNPV----YLLPLVELVGGGKTSPETIRRAK 166 (495)
T ss_pred HHHHH--HHHHhhCCCCc-EEEEcCCCCCHH-HHHhhcCCcceEEEEecCCCc----ccCceEEEcCCCCCCHHHHHHHH
Confidence 88765 56766666665 455665555433 556666666777888887732 234567777775 79999999
Q ss_pred HHHHHhcCCeEEeCCcchHHHHHHHHHHHHHHHHHH-HHHHHhccc
Q psy755 138 PILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMG-VAEAMNLGV 182 (183)
Q Consensus 138 ~l~~~~g~~~~~~g~~g~a~~~k~~~~~~~~~~~~~-~~E~~~~~~ 182 (183)
++++.+|..+++++..- .|.+....+.. +.|++.+++
T Consensus 167 ~~~~~lG~~~v~~~k~~--------~gfi~nrl~~a~~~EA~~L~~ 204 (495)
T PRK07531 167 EILREIGMKPVHIAKEI--------DAFVGDRLLEALWREALWLVK 204 (495)
T ss_pred HHHHHcCCEEEeecCCC--------cchhHHHHHHHHHHHHHHHHH
Confidence 99999999999998533 44444444444 477776654
No 38
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.75 E-value=2.2e-17 Score=135.76 Aligned_cols=158 Identities=19% Similarity=0.298 Sum_probs=119.6
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHH-----------HHcC-------------CcccCCHHHHhccCCEEEEecCC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTL-----------AKEG-------------ANMALSLSTLASGAEFIISMLPA 56 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~-----------~~~g-------------~~~~~~~~~~~~~adiVi~~vp~ 56 (183)
||..||..|+++|++|++||++++.+++. .+.| +..++++.+ +.+||+||.++|+
T Consensus 18 MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~aDlViEav~E 96 (507)
T PRK08268 18 MGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LADCDLVVEAIVE 96 (507)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCCCCEEEEcCcc
Confidence 89999999999999999999999988774 3334 455667765 5699999999999
Q ss_pred hHHHHHHhcCCccccccCCCCcEEE-eccCCCchhHHHHHHHHH--h--cCCcEEe-ecccCCHHHHhcCceEEEec---
Q psy755 57 SQDVLDAYDGSDGILKHAKPGVIVI-DSSTVDPQVPQTLSNLAR--E--KQITFLD-APVSGGTKAAQEATLTFMVG--- 127 (183)
Q Consensus 57 ~~~~~~v~~~~~~l~~~l~~~~iii-d~s~~~~~~~~~~~~~~~--~--~g~~~~~-~~~~~~~~~~~~~~~~~~~~--- 127 (183)
+.+++..+| .++....+++.++. |+|+..+.. +.+... + .|.||++ +|++. ++.+++
T Consensus 97 ~~~vK~~vf--~~l~~~~~~~ailasntStl~i~~---la~~~~~p~r~~G~hff~Pa~v~~---------LvEvv~g~~ 162 (507)
T PRK08268 97 RLDVKQALF--AQLEAIVSPDCILATNTSSLSITA---IAAALKHPERVAGLHFFNPVPLMK---------LVEVVSGLA 162 (507)
T ss_pred cHHHHHHHH--HHHHhhCCCCcEEEECCCCCCHHH---HHhhcCCcccEEEEeecCCcccCe---------eEEEeCCCC
Confidence 999999987 55777777888884 777766653 333322 2 3889999 66663 566666
Q ss_pred CCHHHHHHHHHHHHHhcCCeEEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy755 128 GDKSSLEKAKPILKCMGRNIVHCGD-SGNGQVAKLCNNMLLGVTMMGVAEAMNLGV 182 (183)
Q Consensus 128 g~~~~~~~~~~l~~~~g~~~~~~g~-~g~a~~~k~~~~~~~~~~~~~~~E~~~~~~ 182 (183)
+++++++.+.++++.+|+.++++++ +| . +.|-+.. ..++|++.+++
T Consensus 163 Ts~~~~~~~~~l~~~lgk~pv~v~d~pG--f----i~Nrll~---~~~~Ea~~l~~ 209 (507)
T PRK08268 163 TDPAVADALYALARAWGKTPVRAKDTPG--F----IVNRAAR---PYYTEALRVLE 209 (507)
T ss_pred CCHHHHHHHHHHHHHcCCceEEecCCCC--h----HHHHHHH---HHHHHHHHHHH
Confidence 4889999999999999999999986 56 2 3333332 36777776654
No 39
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.73 E-value=5.1e-17 Score=124.96 Aligned_cols=168 Identities=15% Similarity=0.242 Sum_probs=128.7
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHH-----------HHHcC-------------CcccCCHHHHhccCCEEEEecCC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQT-----------LAKEG-------------ANMALSLSTLASGAEFIISMLPA 56 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~-----------~~~~g-------------~~~~~~~~~~~~~adiVi~~vp~ 56 (183)
||..||..++.+|++|++||++++..++ +.+.| +..++++ +.+++||+||.|+|+
T Consensus 16 mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~~d~ViEav~E 94 (286)
T PRK07819 16 MGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFADRQLVIEAVVE 94 (286)
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCCCCEEEEeccc
Confidence 8999999999999999999999998766 23223 2256666 557999999999999
Q ss_pred hHHHHHHhcCCccccccC-CCCcEEEeccCCCchhHHHHHHHHHhc--CCcEEe-ecccCCHHHHhcCceEEEecCCHHH
Q psy755 57 SQDVLDAYDGSDGILKHA-KPGVIVIDSSTVDPQVPQTLSNLAREK--QITFLD-APVSGGTKAAQEATLTFMVGGDKSS 132 (183)
Q Consensus 57 ~~~~~~v~~~~~~l~~~l-~~~~iiid~s~~~~~~~~~~~~~~~~~--g~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~ 132 (183)
..+++..+| ..+.... ++++++.+.|++.|....+.....+++ |.||++ .++.+..+ .+....++++.
T Consensus 95 ~~~~K~~l~--~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvE------lv~~~~T~~~~ 166 (286)
T PRK07819 95 DEAVKTEIF--AELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVE------LVPTLVTSEAT 166 (286)
T ss_pred CHHHHHHHH--HHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEE------EeCCCCCCHHH
Confidence 999999887 5666666 789999999998888876665555555 788888 45555432 34445679999
Q ss_pred HHHHHHHHH-HhcCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q psy755 133 LEKAKPILK-CMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAM 178 (183)
Q Consensus 133 ~~~~~~l~~-~~g~~~~~~g~~g~a~~~k~~~~~~~~~~~~~~~E~~ 178 (183)
++.+.+++. .+|+.++.+++ ..+.....+...+....+..+.|+.
T Consensus 167 ~~~~~~~~~~~lgk~pv~v~d-~pGfi~nRi~~~~~~Ea~~ll~eGv 212 (286)
T PRK07819 167 VARAEEFASDVLGKQVVRAQD-RSGFVVNALLVPYLLSAIRMVESGF 212 (286)
T ss_pred HHHHHHHHHHhCCCCceEecC-CCChHHHHHHHHHHHHHHHHHHhCC
Confidence 999999988 59999998865 4466777666666666666666653
No 40
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.73 E-value=4e-17 Score=126.98 Aligned_cols=163 Identities=21% Similarity=0.324 Sum_probs=122.7
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCcccccc-CCCCcE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKH-AKPGVI 79 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~-l~~~~i 79 (183)
||++||..|.++||+|++|+|++. +++.++++++|+||+++|+ ..++.++ +++.+. ++++++
T Consensus 15 ~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~~~advvi~~vp~-~~~~~v~---~~l~~~~~~~~~i 77 (308)
T PRK14619 15 WGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVLADADVIVSAVSM-KGVRPVA---EQVQALNLPPETI 77 (308)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHHhcCCEEEEECCh-HHHHHHH---HHHHHhcCCCCcE
Confidence 799999999999999999999874 4778888999999999998 5788887 677663 678899
Q ss_pred EEeccC-CCchhHHHHHHHHHhcCCcEEeeccc--CCHHHH-----hcCceEEEecCCHHHHHHHHHHHHHhcCCeEEeC
Q psy755 80 VIDSST-VDPQVPQTLSNLAREKQITFLDAPVS--GGTKAA-----QEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCG 151 (183)
Q Consensus 80 iid~s~-~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~-----~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~g 151 (183)
++++++ ..|.......+.+... +.++|+. +++..+ ..+..+++++++++..+.++++|+..+.++++.+
T Consensus 78 vi~~s~gi~~~~~~~~s~~~~~~---~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~~~v~~ll~~~~~~~~~~~ 154 (308)
T PRK14619 78 IVTATKGLDPETTRTPSQIWQAA---FPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQIFSSERFRVYTNS 154 (308)
T ss_pred EEEeCCcccCCCCcCHHHHHHHH---cCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHHHHHHHHhCCCcEEEEecC
Confidence 999886 4555554444544432 3344442 333222 2246678889999999999999999998888777
Q ss_pred C-cc--h--------------HHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy755 152 D-SG--N--------------GQVAKLCNNMLLGVTMMGVAEAMNLGVK 183 (183)
Q Consensus 152 ~-~g--~--------------a~~~k~~~~~~~~~~~~~~~E~~~~~~~ 183 (183)
+ .| - +..+|+..|.+......++.|++.++++
T Consensus 155 d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~ 203 (308)
T PRK14619 155 DPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTH 203 (308)
T ss_pred CchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHH
Confidence 6 22 1 2334477888888899999999988763
No 41
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.72 E-value=1.5e-16 Score=130.55 Aligned_cols=159 Identities=21% Similarity=0.270 Sum_probs=116.1
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHH-----------HHcC-------------CcccCCHHHHhccCCEEEEecCC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTL-----------AKEG-------------ANMALSLSTLASGAEFIISMLPA 56 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~-----------~~~g-------------~~~~~~~~~~~~~adiVi~~vp~ 56 (183)
||..||..|+++||+|++||++++.++++ .+.| +..++++.+ +.+||+||.|+|+
T Consensus 16 MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~aDlVIEav~E 94 (503)
T TIGR02279 16 MGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LADAGLVIEAIVE 94 (503)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCCCCEEEEcCcC
Confidence 89999999999999999999999987653 2223 335667765 5699999999999
Q ss_pred hHHHHHHhcCCccccccCCCCcEEEeccCCCchhHHHHHHHHH----hcCCcEEe-ecccCCHHHHhcCceEEEecC---
Q psy755 57 SQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAR----EKQITFLD-APVSGGTKAAQEATLTFMVGG--- 128 (183)
Q Consensus 57 ~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~----~~g~~~~~-~~~~~~~~~~~~~~~~~~~~g--- 128 (183)
..+++..+| .++....+++.+|...|++.+.+ .+.+.+. ..|.||++ +|+++ ++.+++|
T Consensus 95 ~~~vK~~vf--~~l~~~~~~~~IlasnTStl~i~--~iA~~~~~p~r~~G~HFf~Papv~~---------LvEvv~g~~T 161 (503)
T TIGR02279 95 NLEVKKALF--AQLEELCPADTIIASNTSSLSIT--AIAAGLARPERVAGLHFFNPAPVMA---------LVEVVSGLAT 161 (503)
T ss_pred cHHHHHHHH--HHHHhhCCCCeEEEECCCCCCHH--HHHHhcCcccceEEEeccCccccCc---------eEEEeCCCCC
Confidence 999999887 55666676666665333333333 2333332 34889999 67763 5777777
Q ss_pred CHHHHHHHHHHHHHhcCCeEEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy755 129 DKSSLEKAKPILKCMGRNIVHCGD-SGNGQVAKLCNNMLLGVTMMGVAEAMNLGV 182 (183)
Q Consensus 129 ~~~~~~~~~~l~~~~g~~~~~~g~-~g~a~~~k~~~~~~~~~~~~~~~E~~~~~~ 182 (183)
+++.++.+.++++.+|+.++++++ +| . ++++++ ...++|++.+.+
T Consensus 162 s~e~~~~~~~l~~~lgk~pv~v~d~pG--f---i~Nrl~----~~~~~EA~~l~e 207 (503)
T TIGR02279 162 AAEVAEQLYETALAWGKQPVHCHSTPG--F---IVNRVA----RPYYAEALRALE 207 (503)
T ss_pred CHHHHHHHHHHHHHcCCeeeEeCCCCC--c---HHHHHH----HHHHHHHHHHHH
Confidence 899999999999999999999987 55 2 233333 247777777654
No 42
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.72 E-value=1e-16 Score=124.56 Aligned_cols=162 Identities=17% Similarity=0.225 Sum_probs=114.7
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchh-------HHHH-----------HHc-------------CCcccCC--HHHHhccC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDA-------SQTL-----------AKE-------------GANMALS--LSTLASGA 47 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~-------~~~~-----------~~~-------------g~~~~~~--~~~~~~~a 47 (183)
||..||..++.+|++|++||++++. +++. .+. .+....+ ..+++++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 9999999999999999999999953 2111 111 1333322 66788999
Q ss_pred CEEEEecCChHHHHHHhcCCccccccCCCCcEEEeccCCCchhHHHHHHHHH----hcCCcEEeecccCCHHHHhcCceE
Q psy755 48 EFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAR----EKQITFLDAPVSGGTKAAQEATLT 123 (183)
Q Consensus 48 diVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~ 123 (183)
|+||.++|.+..++..+| .++.+..++++++. ||+++.....+.+... ..|.||++.|.... ++
T Consensus 81 D~ViEav~E~~~~K~~~f--~~l~~~~~~~~ila--SntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~--------lv 148 (314)
T PRK08269 81 DLVFEAVPEVLDAKREAL--RWLGRHVDADAIIA--STTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMP--------LV 148 (314)
T ss_pred CEEEECCcCCHHHHHHHH--HHHHhhCCCCcEEE--EccccCCHHHHHhhcCCcccEEEEecCCccccCc--------eE
Confidence 999999999999999988 56888888998884 5555555556666553 23788888762221 11
Q ss_pred EEe---cCCHHHHHHHHHHHHHhcCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy755 124 FMV---GGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGV 182 (183)
Q Consensus 124 ~~~---~g~~~~~~~~~~l~~~~g~~~~~~g~~g~a~~~k~~~~~~~~~~~~~~~E~~~~~~ 182 (183)
-++ +++++.++.+.++++.+|+.++++++.+ +++ +.......++|++.+++
T Consensus 149 EVv~g~~t~~e~~~~~~~ll~~lGk~~v~v~d~~-Gfi-------~nri~~~~l~EAl~l~e 202 (314)
T PRK08269 149 EVSPSDATDPAVVDRLAALLERIGKVPVVCGPSP-GYI-------VPRIQALAMNEAARMVE 202 (314)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCcEEEecCCC-Ccc-------hHHHHHHHHHHHHHHHH
Confidence 111 4688999999999999999999999854 433 33444456666666544
No 43
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.71 E-value=4.9e-16 Score=120.72 Aligned_cols=182 Identities=19% Similarity=0.221 Sum_probs=136.1
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHc-------------------C-CcccCCHHHHhccCCEEEEecCChHH-
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKE-------------------G-ANMALSLSTLASGAEFIISMLPASQD- 59 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~-------------------g-~~~~~~~~~~~~~adiVi~~vp~~~~- 59 (183)
+|..+|..++++|++|.++|.++.+++.+... | ...+++.++ ++.||++++|||.|..
T Consensus 20 VGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~-l~~~dv~iI~VPTPl~~ 98 (436)
T COG0677 20 VGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEE-LKECDVFIICVPTPLKK 98 (436)
T ss_pred ccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhh-cccCCEEEEEecCCcCC
Confidence 68999999999999999999999988766542 2 334444444 4589999999998742
Q ss_pred -----HHHHhcCCccccccCCCCcEEEeccCCCchhHHHHHHHHHhc--CCcE-----Ee-ec--ccCCHHHHh-cCceE
Q psy755 60 -----VLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREK--QITF-----LD-AP--VSGGTKAAQ-EATLT 123 (183)
Q Consensus 60 -----~~~v~~~~~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~--g~~~-----~~-~~--~~~~~~~~~-~~~~~ 123 (183)
+..+....+.+.+.|++|++||--|++.|.+.+.+...+.+. |..+ +. +| +..|....+ ....-
T Consensus 99 ~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysPERv~PG~~~~el~~~~k 178 (436)
T COG0677 99 YREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPERVLPGNVLKELVNNPK 178 (436)
T ss_pred CCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCccccCCCchhhhhhcCCc
Confidence 112222227889999999999999999999999999888774 3333 22 34 222211111 11112
Q ss_pred EEecCCHHHHHHHHHHHHHhcCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy755 124 FMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVK 183 (183)
Q Consensus 124 ~~~~g~~~~~~~~~~l~~~~g~~~~~~g~~g~a~~~k~~~~~~~~~~~~~~~E~~~~~~~ 183 (183)
++.|.+++..+.+..|++.+-...+.+.+.-.|+++|++.|.++.+++++++|+..+|++
T Consensus 179 VIgG~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~~~ 238 (436)
T COG0677 179 VIGGVTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALICNA 238 (436)
T ss_pred eeecCCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 455567888899999999987668888889999999999999999999999999888764
No 44
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.71 E-value=6.5e-16 Score=122.48 Aligned_cols=168 Identities=21% Similarity=0.282 Sum_probs=129.1
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcC--Cc--ccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccc-cCC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEG--AN--MALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK-HAK 75 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g--~~--~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~-~l~ 75 (183)
||++||+.|.++|++|.+|+++++..+...+.+ +. ..+++.+++++||+||+|+|.. .+..++ +++.+ .++
T Consensus 11 iG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~-~~~~vl---~~l~~~~l~ 86 (359)
T PRK06545 11 IGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVD-ATAALL---AELADLELK 86 (359)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHH-HHHHHH---HHHhhcCCC
Confidence 799999999999999999998887655544443 22 2356778889999999999984 577777 77877 478
Q ss_pred CCcEEEeccCCCchhHHHHHHHHHhcCCcEEe-ecccCCH----HH----HhcCceEEEec---CCHHHHHHHHHHHHHh
Q psy755 76 PGVIVIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGT----KA----AQEATLTFMVG---GDKSSLEKAKPILKCM 143 (183)
Q Consensus 76 ~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~----~~----~~~~~~~~~~~---g~~~~~~~~~~l~~~~ 143 (183)
++.+|+|.++++......+.+. ...+.+|++ |||+|++ .. ...+..++++. .+++.++.++++++.+
T Consensus 87 ~~~ivtDv~SvK~~i~~~~~~~-~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~~~~v~~l~~~l 165 (359)
T PRK06545 87 PGVIVTDVGSVKGAILAEAEAL-LGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDAVAELKDLLSGT 165 (359)
T ss_pred CCcEEEeCccccHHHHHHHHHh-cCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHHHHHHHHHHHHc
Confidence 8999999999998887777665 334678998 8999863 11 12355456664 4778889999999999
Q ss_pred cCCeEEeCCcchHHHHHHHHHHHHHHHHHH
Q psy755 144 GRNIVHCGDSGNGQVAKLCNNMLLGVTMMG 173 (183)
Q Consensus 144 g~~~~~~g~~g~a~~~k~~~~~~~~~~~~~ 173 (183)
|..++++++.....++.+++..-.....+.
T Consensus 166 Ga~~v~~~~~~HD~~~A~vshlPh~ia~al 195 (359)
T PRK06545 166 GAKFVVLDAEEHDRAVALVSHLPHILASSL 195 (359)
T ss_pred CCEEEECCHHHHhHHHhHhccHHHHHHHHH
Confidence 999999998777888888777766555433
No 45
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.70 E-value=2.1e-16 Score=122.76 Aligned_cols=167 Identities=20% Similarity=0.237 Sum_probs=123.1
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHH-----------c---------CCcccCCHHHHhccCCEEEEecCChHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAK-----------E---------GANMALSLSTLASGAEFIISMLPASQDV 60 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~-----------~---------g~~~~~~~~~~~~~adiVi~~vp~~~~~ 60 (183)
||..||..|+.+|++|++||++++..+++.+ . .+...+++++++++||+|+.++|...++
T Consensus 18 MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlViEavpE~l~v 97 (321)
T PRK07066 18 IGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFIQESAPEREAL 97 (321)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEEEECCcCCHHH
Confidence 8999999999999999999999987654322 1 2355678888899999999999999999
Q ss_pred HHHhcCCccccccCCCCcEEEeccCCCchhHHHHHHHHHhc----CCcEEeecccCCHHHHhcCceEEEe---cCCHHHH
Q psy755 61 LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREK----QITFLDAPVSGGTKAAQEATLTFMV---GGDKSSL 133 (183)
Q Consensus 61 ~~v~~~~~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~ 133 (183)
|..+| .++.+..+++.+| .+||+ +.....+.+.+... +.||++.|-.- +++-++ ..+++.+
T Consensus 98 K~~lf--~~l~~~~~~~aIl-aSnTS-~l~~s~la~~~~~p~R~~g~HffnP~~~~--------pLVEVv~g~~T~~e~~ 165 (321)
T PRK07066 98 KLELH--ERISRAAKPDAII-ASSTS-GLLPTDFYARATHPERCVVGHPFNPVYLL--------PLVEVLGGERTAPEAV 165 (321)
T ss_pred HHHHH--HHHHHhCCCCeEE-EECCC-ccCHHHHHHhcCCcccEEEEecCCccccC--------ceEEEeCCCCCCHHHH
Confidence 99887 7888888888744 44444 33333444443321 45665533221 123233 3478999
Q ss_pred HHHHHHHHHhcCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHh
Q psy755 134 EKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMN 179 (183)
Q Consensus 134 ~~~~~l~~~~g~~~~~~g~~g~a~~~k~~~~~~~~~~~~~~~E~~~ 179 (183)
+.+.++++++|+.++.+.....++.+..++..+....+..+.|+..
T Consensus 166 ~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a~~~EA~~lv~eGva 211 (321)
T PRK07066 166 DAAMGIYRALGMRPLHVRKEVPGFIADRLLEALWREALHLVNEGVA 211 (321)
T ss_pred HHHHHHHHHcCCEeEecCCCCccHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999876666889988888888888877777644
No 46
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.70 E-value=8.7e-16 Score=117.15 Aligned_cols=140 Identities=16% Similarity=0.202 Sum_probs=104.3
Q ss_pred CcHHHHHHHHhCCC----cEEEE-cCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCC
Q psy755 1 MGSHMARNLLKNGH----DVIVY-DKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAK 75 (183)
Q Consensus 1 mG~~iA~~l~~~g~----~V~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~ 75 (183)
||.+|+++|.++|+ +|++| +|++++.+.+.+.|+...+++.++++++|+||+|+| ++.++.++ +++.+.++
T Consensus 11 mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl---~~l~~~~~ 86 (266)
T PLN02688 11 MAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVL---TELRPLLS 86 (266)
T ss_pred HHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHH---HHHHhhcC
Confidence 89999999999998 89999 999999988888888888889999999999999997 47788888 67878888
Q ss_pred CCcEEEeccCCCchhHHHHHHHHHhcCCcEEe-ecccCCHHHHhcCceEEEe--cCCHHHHHHHHHHHHHhcCCeEEeC
Q psy755 76 PGVIVIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGTKAAQEATLTFMV--GGDKSSLEKAKPILKCMGRNIVHCG 151 (183)
Q Consensus 76 ~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~l~~~~g~~~~~~g 151 (183)
++++||+.++..+.. .+.+.+... +++. +|..+. ....+...+.. +++++.++.++++|+.+|. +++++
T Consensus 87 ~~~~iIs~~~g~~~~--~l~~~~~~~--~vvr~mP~~~~--~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~G~-~~~~~ 158 (266)
T PLN02688 87 KDKLLVSVAAGITLA--DLQEWAGGR--RVVRVMPNTPC--LVGEAASVMSLGPAATADDRDLVATLFGAVGK-IWVVD 158 (266)
T ss_pred CCCEEEEecCCCcHH--HHHHHcCCC--CEEEECCCcHH--HHhCceEEEEeCCCCCHHHHHHHHHHHHhCCC-EEEeC
Confidence 899888775544332 333333221 5554 454433 33333322322 3478889999999999999 87764
No 47
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.68 E-value=2.9e-15 Score=116.50 Aligned_cols=167 Identities=18% Similarity=0.341 Sum_probs=126.7
Q ss_pred CcHHHHHHHHhCCC--cEEEEcCCchhHHHHHHcCC--cccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCC
Q psy755 1 MGSHMARNLLKNGH--DVIVYDKNTDASQTLAKEGA--NMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 76 (183)
Q Consensus 1 mG~~iA~~l~~~g~--~V~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~ 76 (183)
||.+++..|.+.|+ +|++|||++++.+.+.+.|. ....+..+.++++|+||+|+|.. ....++ +++.+.+++
T Consensus 17 mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~-~~~~v~---~~l~~~l~~ 92 (307)
T PRK07502 17 IGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG-ASGAVA---AEIAPHLKP 92 (307)
T ss_pred HHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH-HHHHHH---HHHHhhCCC
Confidence 78999999999985 89999999998888877764 23457778889999999999984 456665 677788889
Q ss_pred CcEEEeccCCCchhHHHHHHHHHhcCCcEEe-ecccCCHH-HHh-------cCceEEEe---cCCHHHHHHHHHHHHHhc
Q psy755 77 GVIVIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGTK-AAQ-------EATLTFMV---GGDKSSLEKAKPILKCMG 144 (183)
Q Consensus 77 ~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~-~~~-------~~~~~~~~---~g~~~~~~~~~~l~~~~g 144 (183)
+.+|+|+++.+......+.+.+. .+.+|+. +|+.++.. ... .+..++++ +++++.++.+.++++.+|
T Consensus 93 ~~iv~dvgs~k~~~~~~~~~~~~-~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG 171 (307)
T PRK07502 93 GAIVTDVGSVKASVIAAMAPHLP-EGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPAAVARLTAFWRALG 171 (307)
T ss_pred CCEEEeCccchHHHHHHHHHhCC-CCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Confidence 99999999988777666655443 3667888 69987431 111 24334444 457788899999999999
Q ss_pred CCeEEeCCcchHHHHHHHHHHHHHHHHH
Q psy755 145 RNIVHCGDSGNGQVAKLCNNMLLGVTMM 172 (183)
Q Consensus 145 ~~~~~~g~~g~a~~~k~~~~~~~~~~~~ 172 (183)
.+++++++......+-+++.........
T Consensus 172 ~~~~~~~~~~hD~~~A~~s~lph~~a~~ 199 (307)
T PRK07502 172 ARVEEMDPEHHDLVLAITSHLPHLIAYT 199 (307)
T ss_pred CEEEEcCHHHHhHHHHHHhhHHHHHHHH
Confidence 9999999877777777777666554443
No 48
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.68 E-value=3.2e-15 Score=121.72 Aligned_cols=180 Identities=14% Similarity=0.162 Sum_probs=135.7
Q ss_pred CcHHHHHHHHhCC--CcEEEEcCCchhHHHHHHcC-------------------CcccCCHHHHhccCCEEEEecCChH-
Q psy755 1 MGSHMARNLLKNG--HDVIVYDKNTDASQTLAKEG-------------------ANMALSLSTLASGAEFIISMLPASQ- 58 (183)
Q Consensus 1 mG~~iA~~l~~~g--~~V~~~~~~~~~~~~~~~~g-------------------~~~~~~~~~~~~~adiVi~~vp~~~- 58 (183)
+|..+|..|+++| ++|++||+++++++.+.+.+ ...+++..+.+++||++|+|||.|.
T Consensus 12 vGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~advi~I~V~TP~~ 91 (473)
T PLN02353 12 VGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADIVFVSVNTPTK 91 (473)
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCEEEEEeCCCCC
Confidence 5889999999884 78999999999988865421 2344566778899999999997654
Q ss_pred -------------HHHHHhcCCccccccCCCCcEEEeccCCCchhHHHHHHHHHhc--C--CcEEeecccCCHHHHhc--
Q psy755 59 -------------DVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREK--Q--ITFLDAPVSGGTKAAQE-- 119 (183)
Q Consensus 59 -------------~~~~v~~~~~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~--g--~~~~~~~~~~~~~~~~~-- 119 (183)
.+..++ +.+.+.++++++||..|++.|.+.+.+...+.+. | +++..+|.+-.+-.+..
T Consensus 92 ~~g~~~~~~~Dls~v~~a~---~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PErl~~G~a~~d~ 168 (473)
T PLN02353 92 TRGLGAGKAADLTYWESAA---RMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLAEGTAIEDL 168 (473)
T ss_pred CCCCcCCCCCcHHHHHHHH---HHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCCccCCCCccccc
Confidence 345555 7888999999999999999999999988887764 3 34445664432211111
Q ss_pred -CceEEEecCC-----HHHHHHHHHHHHHhcC-CeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy755 120 -ATLTFMVGGD-----KSSLEKAKPILKCMGR-NIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVK 183 (183)
Q Consensus 120 -~~~~~~~~g~-----~~~~~~~~~l~~~~g~-~~~~~g~~g~a~~~k~~~~~~~~~~~~~~~E~~~~~~~ 183 (183)
..--+++|+. +++.+.++++++.+-. .++.+.+...|++.|++.|.++.+++++++|+..+|++
T Consensus 169 ~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NEla~lce~ 239 (473)
T PLN02353 169 FKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEA 239 (473)
T ss_pred CCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112444542 3467888999998853 46667778999999999999999999999999999874
No 49
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.68 E-value=4.3e-16 Score=120.35 Aligned_cols=164 Identities=18% Similarity=0.223 Sum_probs=110.6
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHH-----------cC-------------CcccCCHHHHhccCCEEEEecCC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAK-----------EG-------------ANMALSLSTLASGAEFIISMLPA 56 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~~adiVi~~vp~ 56 (183)
||.+||..|+++|++|++||+++++++++.+ .| +...++++ .+++||+||+|+|.
T Consensus 15 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~aD~Vieavpe 93 (292)
T PRK07530 15 MGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLADCDLVIEAATE 93 (292)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcCCCEEEEcCcC
Confidence 7999999999999999999999988766432 12 23455664 57899999999999
Q ss_pred hHHHHHHhcCCccccccCCCCcEEEeccCCCchhHHHHHHHHHh----cCCcEEe-ecccCCHHHHhcCceEEEecCCHH
Q psy755 57 SQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLARE----KQITFLD-APVSGGTKAAQEATLTFMVGGDKS 131 (183)
Q Consensus 57 ~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~----~g~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~ 131 (183)
..+++..++ +++.+.++++++|+..+++.+.. .+.+.+.. .|.||++ .|+.+..+ .+...+++++
T Consensus 94 ~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~~s--~la~~~~~~~r~~g~h~~~p~~~~~~ve------i~~g~~t~~~ 163 (292)
T PRK07530 94 DETVKRKIF--AQLCPVLKPEAILATNTSSISIT--RLASATDRPERFIGIHFMNPVPVMKLVE------LIRGIATDEA 163 (292)
T ss_pred CHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCHH--HHHhhcCCcccEEEeeccCCcccCceEE------EeCCCCCCHH
Confidence 877766655 67888888999887433333322 34444321 2677777 34443211 1112357899
Q ss_pred HHHHHHHHHHHhcCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHH
Q psy755 132 SLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAE 176 (183)
Q Consensus 132 ~~~~~~~l~~~~g~~~~~~g~~g~a~~~k~~~~~~~~~~~~~~~E 176 (183)
.++.+.++++.+|+.++++++.+ +.....+.-.+....+..+.|
T Consensus 164 ~~~~~~~~~~~~gk~~v~~~d~p-g~i~nRl~~~~~~ea~~~~~~ 207 (292)
T PRK07530 164 TFEAAKEFVTKLGKTITVAEDFP-AFIVNRILLPMINEAIYTLYE 207 (292)
T ss_pred HHHHHHHHHHHcCCeEEEecCcC-ChHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999888744 444444433333333444444
No 50
>PLN02256 arogenate dehydrogenase
Probab=99.68 E-value=3.6e-15 Score=115.39 Aligned_cols=163 Identities=14% Similarity=0.174 Sum_probs=123.5
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHh-ccCCEEEEecCChHHHHHHhcCCccc-cccCCCCc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLA-SGAEFIISMLPASQDVLDAYDGSDGI-LKHAKPGV 78 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~adiVi~~vp~~~~~~~v~~~~~~l-~~~l~~~~ 78 (183)
||.++|+.|.+.|++|++||+++.. +.+...|+....+..+++ .++|+||+|+|. ..+..++ +++ .+.+++++
T Consensus 47 mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~gv~~~~~~~e~~~~~aDvVilavp~-~~~~~vl---~~l~~~~l~~~~ 121 (304)
T PLN02256 47 FGQFLAKTFVKQGHTVLATSRSDYS-DIAAELGVSFFRDPDDFCEEHPDVVLLCTSI-LSTEAVL---RSLPLQRLKRST 121 (304)
T ss_pred HHHHHHHHHHhCCCEEEEEECccHH-HHHHHcCCeeeCCHHHHhhCCCCEEEEecCH-HHHHHHH---HhhhhhccCCCC
Confidence 7999999999999999999999743 445556776667788776 479999999987 5677776 677 56788999
Q ss_pred EEEeccCCCchhHHHHHHHHHhcCCcEEe-ecccCCHHH--HhcCceEEEec-------CCHHHHHHHHHHHHHhcCCeE
Q psy755 79 IVIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGTKA--AQEATLTFMVG-------GDKSSLEKAKPILKCMGRNIV 148 (183)
Q Consensus 79 iiid~s~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~--~~~~~~~~~~~-------g~~~~~~~~~~l~~~~g~~~~ 148 (183)
+|+|+++++......+.+.+.. +.+|+. ||++|.... ...+...+.+. .+++..+.++++|+.+|.+++
T Consensus 122 iviDv~SvK~~~~~~~~~~l~~-~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~ 200 (304)
T PLN02256 122 LFVDVLSVKEFPKNLLLQVLPE-EFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARCERFLDIFEEEGCRMV 200 (304)
T ss_pred EEEecCCchHHHHHHHHHhCCC-CCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 9999999988777777766543 567888 899986532 11233233332 266788899999999999999
Q ss_pred EeCCcchHHHHHHHHHHHHHH
Q psy755 149 HCGDSGNGQVAKLCNNMLLGV 169 (183)
Q Consensus 149 ~~g~~g~a~~~k~~~~~~~~~ 169 (183)
.+.+...-.++-.++.+-...
T Consensus 201 ~~~~eeHD~~vA~iShLpH~l 221 (304)
T PLN02256 201 EMSCEEHDRYAAGSQFITHTV 221 (304)
T ss_pred EeCHHHHhHHHHhhhhHHHHH
Confidence 999877787777777665543
No 51
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.68 E-value=8.5e-16 Score=118.44 Aligned_cols=169 Identities=15% Similarity=0.218 Sum_probs=119.4
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHc-------------------------CCcccCCHHHHhccCCEEEEecC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKE-------------------------GANMALSLSTLASGAEFIISMLP 55 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~-------------------------g~~~~~~~~~~~~~adiVi~~vp 55 (183)
||.+||..|+++|++|++||+++++++++.+. ++..++++.+++++||+||+|+|
T Consensus 14 mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~~aDlVieavp 93 (287)
T PRK08293 14 LGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVKDADLVIEAVP 93 (287)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhcCCCEEEEecc
Confidence 79999999999999999999999876655321 23346778888899999999999
Q ss_pred ChHHHHHHhcCCccccccCCCCcEEEeccCCCchhHHHHHHHHHhcCCcEEe-ecccCCHHHHhcCceEEEe---cCCHH
Q psy755 56 ASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGTKAAQEATLTFMV---GGDKS 131 (183)
Q Consensus 56 ~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~---~g~~~ 131 (183)
...+.+..++ +++.+.++++++|++.+++.+.. .+.+... +..+|+. |+... ....+.+.++ ..+++
T Consensus 94 e~~~~k~~~~--~~l~~~~~~~~ii~sntSt~~~~--~~~~~~~-~~~r~vg~Hf~~p----~~~~~lvevv~~~~t~~~ 164 (287)
T PRK08293 94 EDPEIKGDFY--EELAKVAPEKTIFATNSSTLLPS--QFAEATG-RPEKFLALHFANE----IWKNNTAEIMGHPGTDPE 164 (287)
T ss_pred CCHHHHHHHH--HHHHhhCCCCCEEEECcccCCHH--HHHhhcC-CcccEEEEcCCCC----CCcCCeEEEeCCCCCCHH
Confidence 8766655544 67888888888886666555443 2333322 2223444 22111 1122334443 46889
Q ss_pred HHHHHHHHHHHhcCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q psy755 132 SLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAM 178 (183)
Q Consensus 132 ~~~~~~~l~~~~g~~~~~~g~~g~a~~~k~~~~~~~~~~~~~~~E~~ 178 (183)
.++.+.++++.+|+.++.+.+...+..+..+...+....+..+.|++
T Consensus 165 ~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l~~~g~ 211 (287)
T PRK08293 165 VFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSAALALWAKGV 211 (287)
T ss_pred HHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999998767788888888777777777666654
No 52
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.67 E-value=5.3e-15 Score=115.31 Aligned_cols=178 Identities=17% Similarity=0.188 Sum_probs=135.4
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchhHHHHHHc-------------------C-CcccCCHHHHhccCCEEEEecCChHH--
Q psy755 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKE-------------------G-ANMALSLSTLASGAEFIISMLPASQD-- 59 (183)
Q Consensus 2 G~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~-------------------g-~~~~~~~~~~~~~adiVi~~vp~~~~-- 59 (183)
|...+.+|++.||+|+..|.++++++.+.+. | ...+++.+++++++|++|+|||.|..
T Consensus 12 GLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~fIavgTP~~~d 91 (414)
T COG1004 12 GLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVVFIAVGTPPDED 91 (414)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEEEEEcCCCCCCC
Confidence 7788999999999999999999998876542 1 45677888899999999999987743
Q ss_pred -------HHHHhcCCccccccCCCCcEEEeccCCCchhHHHHHHHHHhcCCcEEeecccCCHHHHhcCce--------EE
Q psy755 60 -------VLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATL--------TF 124 (183)
Q Consensus 60 -------~~~v~~~~~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~ 124 (183)
++.+. +.+.+.++..++||.-||+.+.+...+.+.+......- +-.+...|+.-++|.+ -+
T Consensus 92 g~aDl~~V~ava---~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLREG~Av~D~~~PdRI 167 (414)
T COG1004 92 GSADLSYVEAVA---KDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLREGSAVYDFLYPDRI 167 (414)
T ss_pred CCccHHHHHHHH---HHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcCcchhhhccCCCeE
Confidence 34444 78888898889999999999999999998887653210 2122233444444332 24
Q ss_pred EecC-CHHHHHHHHHHHHHh--cCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy755 125 MVGG-DKSSLEKAKPILKCM--GRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVK 183 (183)
Q Consensus 125 ~~~g-~~~~~~~~~~l~~~~--g~~~~~~g~~g~a~~~k~~~~~~~~~~~~~~~E~~~~~~~ 183 (183)
++|. ++++.+.++++++.+ ...++...+...|++.|...|.+.++.+++++|.-.+|++
T Consensus 168 ViG~~~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~ 229 (414)
T COG1004 168 VIGVRSERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIANICEK 229 (414)
T ss_pred EEccCChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4454 445677888888776 3345556667889999999999999999999999999874
No 53
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.66 E-value=1.3e-15 Score=117.88 Aligned_cols=152 Identities=20% Similarity=0.270 Sum_probs=106.1
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHH-----------HHHcC------------CcccCCHHHHhccCCEEEEecCCh
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQT-----------LAKEG------------ANMALSLSTLASGAEFIISMLPAS 57 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~-----------~~~~g------------~~~~~~~~~~~~~adiVi~~vp~~ 57 (183)
||.+||..|+++|++|++||+++++.++ +.+.| .....+..+.+++||+||+|+|..
T Consensus 15 mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~aD~Vieav~e~ 94 (295)
T PLN02545 15 MGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDADFIIEAIVES 94 (295)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCCCEEEEcCccC
Confidence 8999999999999999999999988754 22222 122233345689999999999988
Q ss_pred HHHHHHhcCCccccccCCCCcEEE-eccCCCchhHHHHHHHHH-hcCCcEEeecccCCHHHHhcCceEEEec---CCHHH
Q psy755 58 QDVLDAYDGSDGILKHAKPGVIVI-DSSTVDPQVPQTLSNLAR-EKQITFLDAPVSGGTKAAQEATLTFMVG---GDKSS 132 (183)
Q Consensus 58 ~~~~~v~~~~~~l~~~l~~~~iii-d~s~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~ 132 (183)
.+++..++ .++.+.++++++|+ ++|+..+........... -.|+||++.|... +.+.++. ++++.
T Consensus 95 ~~~k~~v~--~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~--------~lveiv~g~~t~~e~ 164 (295)
T PLN02545 95 EDLKKKLF--SELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIM--------KLVEIIRGADTSDEV 164 (295)
T ss_pred HHHHHHHH--HHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccC--------ceEEEeCCCCCCHHH
Confidence 88888776 66778888888886 566655444333322111 1367777776553 2344443 58899
Q ss_pred HHHHHHHHHHhcCCeEEeCCcchHHHHHHHH
Q psy755 133 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCN 163 (183)
Q Consensus 133 ~~~~~~l~~~~g~~~~~~g~~g~a~~~k~~~ 163 (183)
++.++++++.+|+.++++++. .+.....+.
T Consensus 165 ~~~~~~ll~~lG~~~~~~~d~-~g~i~nri~ 194 (295)
T PLN02545 165 FDATKALAERFGKTVVCSQDY-PGFIVNRIL 194 (295)
T ss_pred HHHHHHHHHHcCCeeEEecCc-ccHHHHHHH
Confidence 999999999999999888762 234443333
No 54
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.65 E-value=6.5e-15 Score=116.24 Aligned_cols=153 Identities=14% Similarity=0.180 Sum_probs=117.2
Q ss_pred CcHHHHHHHHhC-CCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCcccccc---CCC
Q psy755 1 MGSHMARNLLKN-GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKH---AKP 76 (183)
Q Consensus 1 mG~~iA~~l~~~-g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~---l~~ 76 (183)
||+++|+.|.+. |++|++||++.+ ...++.+.+.+||+||+|+|... +..++ +++.+. +++
T Consensus 16 iGgslA~alk~~~~~~V~g~D~~d~-----------~~~~~~~~v~~aDlVilavPv~~-~~~~l---~~l~~~~~~l~~ 80 (370)
T PRK08818 16 YGRWLARFLRTRMQLEVIGHDPADP-----------GSLDPATLLQRADVLIFSAPIRH-TAALI---EEYVALAGGRAA 80 (370)
T ss_pred HHHHHHHHHHhcCCCEEEEEcCCcc-----------ccCCHHHHhcCCCEEEEeCCHHH-HHHHH---HHHhhhhcCCCC
Confidence 799999999964 889999998522 23467788899999999999854 56665 777765 789
Q ss_pred CcEEEeccCCCchhHHHHHHHHHhcCCcEEe-ecccCCHH-HHhcCceEEEecCC-HHHHHHHHHHHHHhcCCeEEeCCc
Q psy755 77 GVIVIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGTK-AAQEATLTFMVGGD-KSSLEKAKPILKCMGRNIVHCGDS 153 (183)
Q Consensus 77 ~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~-~~~~~~~~~~~~g~-~~~~~~~~~l~~~~g~~~~~~g~~ 153 (183)
+++|+|.++++......+. +.+..|+. |||+|.+. ..-.+..++++... .+..+.++++++.+|.+++.+.+.
T Consensus 81 ~~iVtDVgSvK~~i~~~~~----~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~~~~v~~l~~~~Ga~v~~~~ae 156 (370)
T PRK08818 81 GQLWLDVTSIKQAPVAAML----ASQAEVVGLHPMTAPPKSPTLKGRVMVVCEARLQHWSPWVQSLCSALQAECVYATPE 156 (370)
T ss_pred CeEEEECCCCcHHHHHHHH----hcCCCEEeeCCCCCCCCCcccCCCeEEEeCCCchhHHHHHHHHHHHcCCEEEEcCHH
Confidence 9999999999987776653 33567888 89999753 33356666776543 344678999999999999999998
Q ss_pred chHHHHHHHHHHHHHHHHH
Q psy755 154 GNGQVAKLCNNMLLGVTMM 172 (183)
Q Consensus 154 g~a~~~k~~~~~~~~~~~~ 172 (183)
..-..+..++.+-+..++.
T Consensus 157 eHD~~~A~vS~LsHl~~l~ 175 (370)
T PRK08818 157 HHDRVMALVQAMVHATHLA 175 (370)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888887554444443
No 55
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.65 E-value=9.2e-15 Score=112.27 Aligned_cols=175 Identities=18% Similarity=0.313 Sum_probs=137.3
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHc--------------CCcccCCHHHHhccCCEEEEecCChHHHHHHhcC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKE--------------GANMALSLSTLASGAEFIISMLPASQDVLDAYDG 66 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~--------------g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~ 66 (183)
||++||..|+++||+|++|.|+++-.+++... ++..++++.++++++|+|++++|. +.++.++
T Consensus 12 wGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs-~~~r~v~-- 88 (329)
T COG0240 12 WGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS-QALREVL-- 88 (329)
T ss_pred HHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh-HHHHHHH--
Confidence 79999999999999999999999988887663 245567899999999999999988 7789988
Q ss_pred CccccccCCCCcEEEeccCCC-chhHHHHHHHHHhc-C---CcEEeecccCCHHHHhcCceEEEecCCHHHHHHHHHHHH
Q psy755 67 SDGILKHAKPGVIVIDSSTVD-PQVPQTLSNLAREK-Q---ITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILK 141 (183)
Q Consensus 67 ~~~l~~~l~~~~iiid~s~~~-~~~~~~~~~~~~~~-g---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ 141 (183)
+++.+.++++.+++.++... +.+.+.+.+.+.+. + +-++..|-+..+......+.+.+.+.+.+..++++++|+
T Consensus 89 -~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa~g~pta~~vas~d~~~a~~v~~~f~ 167 (329)
T COG0240 89 -RQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGLPTAVVVASNDQEAAEKVQALFS 167 (329)
T ss_pred -HHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHhcCCCcEEEEecCCHHHHHHHHHHhC
Confidence 88888999999999999663 54555555555543 3 345555655555555557766777788888889999999
Q ss_pred HhcCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy755 142 CMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLG 181 (183)
Q Consensus 142 ~~g~~~~~~g~~g~a~~~k~~~~~~~~~~~~~~~E~~~~~ 181 (183)
.=-.+++...+.-..+..-.+.|.+.-. +++.+++.++
T Consensus 168 ~~~Frvy~~~Dv~GveigGAlKNViAIA--~Gi~dGlg~G 205 (329)
T COG0240 168 SPYFRVYTSTDVIGVEIGGALKNVIAIA--AGIADGLGLG 205 (329)
T ss_pred CCcEEEEecCchhhhHHHHHHHHHHHHH--HHHHHHhhcC
Confidence 8777788777877688888888887766 7777777665
No 56
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.64 E-value=4.6e-15 Score=115.63 Aligned_cols=163 Identities=19% Similarity=0.257 Sum_probs=109.5
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHc-----C--------------CcccCCHHHHhccCCEEEEecCChHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKE-----G--------------ANMALSLSTLASGAEFIISMLPASQDVL 61 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~-----g--------------~~~~~~~~~~~~~adiVi~~vp~~~~~~ 61 (183)
||.+||..|++.|++|++||+++++.+++.+. + +..++++.+++++||+||+|+|+..+.+
T Consensus 15 mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi~av~~~~~~~ 94 (311)
T PRK06130 15 MGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVIEAVPEKLELK 94 (311)
T ss_pred HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEEEeccCcHHHH
Confidence 79999999999999999999999887766541 1 2345677788899999999999876544
Q ss_pred HHhcCCccccccCCCCcEEEeccCCCchhHHHHHHHHHhc----CCcEEeecccCCHHHHhcCceEEEecC---CHHHHH
Q psy755 62 DAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREK----QITFLDAPVSGGTKAAQEATLTFMVGG---DKSSLE 134 (183)
Q Consensus 62 ~v~~~~~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~ 134 (183)
..++ .++.+.++++++|+..+++.+ ...+.+.+... +.||.+.|.. +..+.++.+ +++.++
T Consensus 95 ~~v~--~~l~~~~~~~~ii~s~tsg~~--~~~l~~~~~~~~~~ig~h~~~p~~~--------~~l~~i~~g~~t~~~~~~ 162 (311)
T PRK06130 95 RDVF--ARLDGLCDPDTIFATNTSGLP--ITAIAQAVTRPERFVGTHFFTPADV--------IPLVEVVRGDKTSPQTVA 162 (311)
T ss_pred HHHH--HHHHHhCCCCcEEEECCCCCC--HHHHHhhcCCcccEEEEccCCCCcc--------CceEEEeCCCCCCHHHHH
Confidence 4332 667776766666654444433 33555544321 3343332221 123344443 689999
Q ss_pred HHHHHHHHhcCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy755 135 KAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGV 182 (183)
Q Consensus 135 ~~~~l~~~~g~~~~~~g~~g~a~~~k~~~~~~~~~~~~~~~E~~~~~~ 182 (183)
.++++++.+|..++++++...+. +++|++. ..++|++.+.+
T Consensus 163 ~v~~l~~~~G~~~v~~~~d~~G~---i~nr~~~----~~~~Ea~~l~~ 203 (311)
T PRK06130 163 TTMALLRSIGKRPVLVKKDIPGF---IANRIQH----ALAREAISLLE 203 (311)
T ss_pred HHHHHHHHcCCEEEEEcCCCCCc---HHHHHHH----HHHHHHHHHHH
Confidence 99999999999999998644444 5555543 56778877654
No 57
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.63 E-value=4.7e-15 Score=106.95 Aligned_cols=165 Identities=19% Similarity=0.243 Sum_probs=113.9
Q ss_pred CcHHHHHHHHhCCCcEEEEc-CCchhHHHHHHc-C-CcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCC
Q psy755 1 MGSHMARNLLKNGHDVIVYD-KNTDASQTLAKE-G-ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPG 77 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~-~~~~~~~~~~~~-g-~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~ 77 (183)
||.++|++|++.||+|.+.+ |++++.+.+.+. + .....+++++++.+|+||++||. ..+..++ +++.+.+. |
T Consensus 12 iG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~-~a~~~v~---~~l~~~~~-~ 86 (211)
T COG2085 12 IGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPF-EAIPDVL---AELRDALG-G 86 (211)
T ss_pred HHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccH-HHHHhHH---HHHHHHhC-C
Confidence 69999999999999999985 555555554443 2 23456899999999999999998 4566766 78887775 9
Q ss_pred cEEEeccCCC---------------chhHHHHHHHHHhc----CCcEEeecccCCHHHHhcCceEEEecCCHHHHHHHHH
Q psy755 78 VIVIDSSTVD---------------PQVPQTLSNLAREK----QITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKP 138 (183)
Q Consensus 78 ~iiid~s~~~---------------~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 138 (183)
++|||.++.. .+..+.+.+.++.. .++.+.+..............+++++.+.++.+.+.+
T Consensus 87 KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVkAFn~i~a~~l~~~~~~~~~~~v~vagDD~~Ak~~v~~ 166 (211)
T COG2085 87 KIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKAFNTIPAAVLADLAKPGGRRDVLVAGDDAEAKAVVAE 166 (211)
T ss_pred eEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhhhhcccCHHHhccCCCcCCceeEEEecCcHHHHHHHHH
Confidence 9999999852 11223333333322 1222222211111111123345667778889999999
Q ss_pred HHHHhcCCeEEeCCcchHHHHHHHHHHHHHHH
Q psy755 139 ILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVT 170 (183)
Q Consensus 139 l~~~~g~~~~~~g~~g~a~~~k~~~~~~~~~~ 170 (183)
|.+.+|.+++.+|++..+.-+..+...+...+
T Consensus 167 L~~~iG~~~ld~G~L~~a~~le~~t~l~i~~~ 198 (211)
T COG2085 167 LAEDIGFRPLDAGPLENARILEPGTPLLINLA 198 (211)
T ss_pred HHHhcCcceeecccccccccccccchHHHHHh
Confidence 99999999999999999988887776665544
No 58
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.63 E-value=4.9e-15 Score=114.43 Aligned_cols=165 Identities=16% Similarity=0.247 Sum_probs=115.0
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHH--------------cC-------------CcccCCHHHHhccCCEEEEe
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAK--------------EG-------------ANMALSLSTLASGAEFIISM 53 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~--------------~g-------------~~~~~~~~~~~~~adiVi~~ 53 (183)
||.+||..|+++|++|++||++++.++++.+ .+ +...++. +.+++||+||++
T Consensus 14 mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlViea 92 (291)
T PRK06035 14 MGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ESLSDADFIVEA 92 (291)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HHhCCCCEEEEc
Confidence 8999999999999999999999988764322 11 1233344 567899999999
Q ss_pred cCChHHHHHHhcCCccccccCCCCcEEEeccCCCchhHHHHHHHHHhc----CCcEEe-ecccCCHHHHhcCceEEEecC
Q psy755 54 LPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREK----QITFLD-APVSGGTKAAQEATLTFMVGG 128 (183)
Q Consensus 54 vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~----g~~~~~-~~~~~~~~~~~~~~~~~~~~g 128 (183)
+|+...++..++ +++.+.++++++++..++.. ....+.+.+... |.||++ +++.+..+ ...++ ..
T Consensus 93 v~e~~~~k~~~~--~~l~~~~~~~~il~S~tsg~--~~~~la~~~~~~~r~ig~hf~~P~~~~~~vE-v~~g~-----~T 162 (291)
T PRK06035 93 VPEKLDLKRKVF--AELERNVSPETIIASNTSGI--MIAEIATALERKDRFIGMHWFNPAPVMKLIE-VVRAA-----LT 162 (291)
T ss_pred CcCcHHHHHHHH--HHHHhhCCCCeEEEEcCCCC--CHHHHHhhcCCcccEEEEecCCCcccCccEE-EeCCC-----CC
Confidence 999876666554 67888888888887555443 334555554332 667777 45554432 11222 23
Q ss_pred CHHHHHHHHHHHHHhcCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy755 129 DKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEA 177 (183)
Q Consensus 129 ~~~~~~~~~~l~~~~g~~~~~~g~~g~a~~~k~~~~~~~~~~~~~~~E~ 177 (183)
+++.++.+.++++.+|+.++++++.+....-|++.|++.-. +..+.|+
T Consensus 163 ~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~~~ea-~~~~~~g 210 (291)
T PRK06035 163 SEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGWLLEA-IRSFEIG 210 (291)
T ss_pred CHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHHHHHH-HHHHHcC
Confidence 88999999999999999999999877677777777655444 3344443
No 59
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.61 E-value=1.5e-14 Score=111.11 Aligned_cols=138 Identities=15% Similarity=0.239 Sum_probs=99.4
Q ss_pred CcHHHHHHHHhCC----CcEEEEcCCch-hHHHHHHc-CCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccC
Q psy755 1 MGSHMARNLLKNG----HDVIVYDKNTD-ASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHA 74 (183)
Q Consensus 1 mG~~iA~~l~~~g----~~V~~~~~~~~-~~~~~~~~-g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l 74 (183)
||.+|+++|.++| ++|++|+|+++ +.+.+... |+...+++.+++++||+||+++|+ +.+..++ +++.+.+
T Consensus 14 mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p-~~~~~vl---~~l~~~~ 89 (279)
T PRK07679 14 IAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKP-KDVAEAL---IPFKEYI 89 (279)
T ss_pred HHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCH-HHHHHHH---HHHHhhc
Confidence 7999999999998 78999999874 56766554 777777888989999999999987 5567776 7888888
Q ss_pred CCCcEEEec-cCCCchhHHHHHHHHHhcCCcEEeecccCCHHHHhcCceEEEecCC---HHHHHHHHHHHHHhcCCeE
Q psy755 75 KPGVIVIDS-STVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGD---KSSLEKAKPILKCMGRNIV 148 (183)
Q Consensus 75 ~~~~iiid~-s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~l~~~~g~~~~ 148 (183)
+++++||++ ++..+..... .++ .+.. +-.++...+.....+ .+++++++ ++.++.++++|+.+|..++
T Consensus 90 ~~~~liIs~~aGi~~~~l~~---~~~-~~~~-v~r~mPn~~~~~~~~-~t~~~~~~~~~~~~~~~v~~l~~~~G~~~~ 161 (279)
T PRK07679 90 HNNQLIISLLAGVSTHSIRN---LLQ-KDVP-IIRAMPNTSAAILKS-ATAISPSKHATAEHIQTAKALFETIGLVSV 161 (279)
T ss_pred CCCCEEEEECCCCCHHHHHH---HcC-CCCe-EEEECCCHHHHHhcc-cEEEeeCCCCCHHHHHHHHHHHHhCCcEEE
Confidence 889999997 5555554433 222 2222 333333333333333 46666654 6688999999999998655
No 60
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.60 E-value=1.5e-14 Score=107.40 Aligned_cols=162 Identities=17% Similarity=0.251 Sum_probs=113.8
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHc--------CC---cccCCHHHHhccCCEEEEecCChHHHHHHhcCCcc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKE--------GA---NMALSLSTLASGAEFIISMLPASQDVLDAYDGSDG 69 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~--------g~---~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~ 69 (183)
||++++..|+++|++|++|+|++++.+.+.+. |. ....+..+.++++|+||+++|. +.+..++ ++
T Consensus 12 mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~-~~~~~~l---~~ 87 (219)
T TIGR01915 12 QGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPW-DHVLKTL---ES 87 (219)
T ss_pred HHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCH-HHHHHHH---HH
Confidence 78999999999999999999999988766542 21 1224667788999999999987 5567776 66
Q ss_pred ccccCCCCcEEEeccCCCchh---------------HHHHHHHHHhcCCcEEee------cccCCHHHHhcCceEEEecC
Q psy755 70 ILKHAKPGVIVIDSSTVDPQV---------------PQTLSNLAREKQITFLDA------PVSGGTKAAQEATLTFMVGG 128 (183)
Q Consensus 70 l~~~l~~~~iiid~s~~~~~~---------------~~~~~~~~~~~g~~~~~~------~~~~~~~~~~~~~~~~~~~g 128 (183)
+.+.+. +++|+|+++..+.+ .+.+.+.++. +.+++.+ .+..+. ....+..+++++.
T Consensus 88 l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~-~~~VVka~~~~~a~~~~~~-~~~~~~~~~v~Gd 164 (219)
T TIGR01915 88 LRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPE-TSRVVAAFHNLSAVLLQDV-DDEVDCDVLVCGD 164 (219)
T ss_pred HHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCC-CCeEeeccccCCHHHhcCC-CCCCCCCEEEECC
Confidence 766664 58999998876531 1334444332 1233332 222221 1112344566777
Q ss_pred CHHHHHHHHHHHHHh-cCCeEEeCCcchHHHHHHHHHHHHHH
Q psy755 129 DKSSLEKAKPILKCM-GRNIVHCGDSGNGQVAKLCNNMLLGV 169 (183)
Q Consensus 129 ~~~~~~~~~~l~~~~-g~~~~~~g~~g~a~~~k~~~~~~~~~ 169 (183)
++++.+.+.+|.+.+ |.+++++|++..+..+.....++...
T Consensus 165 d~~ak~~v~~L~~~~~G~~~vd~G~l~~a~~~e~~~~l~~~~ 206 (219)
T TIGR01915 165 DEEAKEVVAELAGRIDGLRALDAGPLENAAIVESLTPLLINL 206 (219)
T ss_pred CHHHHHHHHHHHHhcCCCCcccCCchhhHHHHHhHHHHHHHH
Confidence 788889999999999 99999999999998888877666544
No 61
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.58 E-value=1.3e-13 Score=118.74 Aligned_cols=163 Identities=18% Similarity=0.290 Sum_probs=125.0
Q ss_pred CcHHHHHHHHhCC--CcEEEEcCCchhHHHHHHcCCc--ccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCC
Q psy755 1 MGSHMARNLLKNG--HDVIVYDKNTDASQTLAKEGAN--MALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 76 (183)
Q Consensus 1 mG~~iA~~l~~~g--~~V~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~ 76 (183)
||.++++.|.+.| ++|++||+++++.+.+.+.|.. ...+..+++.++|+||+|+|. +.+..++ +.+.+.+++
T Consensus 14 mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~-~~~~~vl---~~l~~~~~~ 89 (735)
T PRK14806 14 IGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPV-LAMEKVL---ADLKPLLSE 89 (735)
T ss_pred HHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCH-HHHHHHH---HHHHHhcCC
Confidence 7999999999998 4899999999998888777764 345677888999999999987 5677877 788888889
Q ss_pred CcEEEeccCCCchhHHHHHHHHHhcCCcEEe-ecccCCHH----HH----hcCceEEEec---CCHHHHHHHHHHHHHhc
Q psy755 77 GVIVIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGTK----AA----QEATLTFMVG---GDKSSLEKAKPILKCMG 144 (183)
Q Consensus 77 ~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~----~~----~~~~~~~~~~---g~~~~~~~~~~l~~~~g 144 (183)
+.+|+|+++.+......+.+.+.....+|+. +|++|+.. .+ -.+..++++. ++++..+.++++|+.+|
T Consensus 90 ~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G 169 (735)
T PRK14806 90 HAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAALARVDRLWRAVG 169 (735)
T ss_pred CcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHHHHHHHHHHHHcC
Confidence 9999999999988888888776555667665 89886542 11 1233344443 46678889999999999
Q ss_pred CCeEEeCCcchHHHHHHHHHHHH
Q psy755 145 RNIVHCGDSGNGQVAKLCNNMLL 167 (183)
Q Consensus 145 ~~~~~~g~~g~a~~~k~~~~~~~ 167 (183)
..++++++......+-.++..-.
T Consensus 170 ~~~~~~~~~~hD~~~a~~~~~ph 192 (735)
T PRK14806 170 ADVLHMDVAHHDEVLAATSHLPH 192 (735)
T ss_pred CEEEEcCHHHHhHHHHHhcchHH
Confidence 99988887555555555554443
No 62
>PRK07680 late competence protein ComER; Validated
Probab=99.57 E-value=1.3e-13 Score=105.58 Aligned_cols=141 Identities=12% Similarity=0.219 Sum_probs=103.5
Q ss_pred CcHHHHHHHHhCCC----cEEEEcCCchhHHHHHHc--CCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccC
Q psy755 1 MGSHMARNLLKNGH----DVIVYDKNTDASQTLAKE--GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHA 74 (183)
Q Consensus 1 mG~~iA~~l~~~g~----~V~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l 74 (183)
||.+++..|.+.|+ +|.+|+|++++.+.+.+. ++....++.+++.++|+||+++|+ +.+..++ +++.+.+
T Consensus 11 mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p-~~~~~vl---~~l~~~l 86 (273)
T PRK07680 11 MGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKP-LDIYPLL---QKLAPHL 86 (273)
T ss_pred HHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCH-HHHHHHH---HHHHhhc
Confidence 79999999999984 799999999988877664 566677888888999999999975 6688887 7888888
Q ss_pred CCCcEEEeccCCCchhHHHHHHHHHhcCCcEEeecccCCHHHHhcCceEEEec--CCHHHHHHHHHHHHHhcCCeEEeCC
Q psy755 75 KPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVG--GDKSSLEKAKPILKCMGRNIVHCGD 152 (183)
Q Consensus 75 ~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~l~~~~g~~~~~~g~ 152 (183)
+++++|+++++.. ....+.+.+.....++++ +.+.....|...+..+ .+++..+.++++|+.+|. ++++.+
T Consensus 87 ~~~~~iis~~ag~--~~~~L~~~~~~~~~r~~p----~~~~~~~~G~t~~~~g~~~~~~~~~~~~~ll~~~G~-~~~i~e 159 (273)
T PRK07680 87 TDEHCLVSITSPI--SVEQLETLVPCQVARIIP----SITNRALSGASLFTFGSRCSEEDQQKLERLFSNIST-PLVIEE 159 (273)
T ss_pred CCCCEEEEECCCC--CHHHHHHHcCCCEEEECC----ChHHHHhhccEEEeeCCCCCHHHHHHHHHHHHcCCC-EEEECh
Confidence 8899999999755 344555554422223332 3444455676544444 356777899999999995 445543
No 63
>PLN02712 arogenate dehydrogenase
Probab=99.57 E-value=1.4e-13 Score=116.42 Aligned_cols=162 Identities=14% Similarity=0.197 Sum_probs=121.5
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHh-ccCCEEEEecCChHHHHHHhcCCcccc-ccCCCCc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLA-SGAEFIISMLPASQDVLDAYDGSDGIL-KHAKPGV 78 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~adiVi~~vp~~~~~~~v~~~~~~l~-~~l~~~~ 78 (183)
||+++|+.|.+.|++|++|||+... +.+.+.|+....++.+++ .++|+||+|+|. ..+..++ +++. +.+++++
T Consensus 63 mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl---~~l~~~~l~~g~ 137 (667)
T PLN02712 63 YGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVL---KSLPLQRLKRNT 137 (667)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHH---HhhhhhcCCCCe
Confidence 7999999999999999999998554 455566877777888855 569999999996 5678877 6665 5688899
Q ss_pred EEEeccCCCchhHHHHHHHHHhcCCcEEe-ecccCCHHHH--hcCceEEEec---CC-H---HHHHHHHHHHHHhcCCeE
Q psy755 79 IVIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGTKAA--QEATLTFMVG---GD-K---SSLEKAKPILKCMGRNIV 148 (183)
Q Consensus 79 iiid~s~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~--~~~~~~~~~~---g~-~---~~~~~~~~l~~~~g~~~~ 148 (183)
+|+|+++++......+.+.++. +..|+. |||+|..... -.+...++.+ ++ . +..+.+.++|+.+|.+++
T Consensus 138 iVvDv~SvK~~~~~~l~~~l~~-~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~ 216 (667)
T PLN02712 138 LFVDVLSVKEFAKNLLLDYLPE-DFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKSFLEVFEREGCKMV 216 (667)
T ss_pred EEEECCCCcHHHHHHHHHhcCC-CCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHHHHHHHHHcCCEEE
Confidence 9999999998777667766543 566777 8999865321 1222234442 22 2 234567799999999999
Q ss_pred EeCCcchHHHHHHHHHHHHH
Q psy755 149 HCGDSGNGQVAKLCNNMLLG 168 (183)
Q Consensus 149 ~~g~~g~a~~~k~~~~~~~~ 168 (183)
.+.+...-.++-.++.+-+.
T Consensus 217 ~ms~eeHD~~~A~vshLpH~ 236 (667)
T PLN02712 217 EMSCTEHDKYAAESQFITHT 236 (667)
T ss_pred EeCHHHHHHHHHHHHHHHHH
Confidence 99988888888888766654
No 64
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.54 E-value=9.8e-14 Score=106.76 Aligned_cols=166 Identities=19% Similarity=0.245 Sum_probs=111.7
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHH-----------HHHcC-------------CcccCCHHHHhccCCEEEEecCC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQT-----------LAKEG-------------ANMALSLSTLASGAEFIISMLPA 56 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~-----------~~~~g-------------~~~~~~~~~~~~~adiVi~~vp~ 56 (183)
||.+||..|+++|++|++||++++++++ +.+.| +..+++.. .+++||+||+|+|+
T Consensus 14 mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~aDlVi~av~e 92 (282)
T PRK05808 14 MGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKDADLVIEAATE 92 (282)
T ss_pred HHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-HhccCCeeeecccc
Confidence 7999999999999999999999998753 22333 22244554 47899999999998
Q ss_pred hHHHHHHhcCCccccccCCCCcEEEeccCCCchhHHHHHHHHHhc----CCcEEe-ecccCCHHHHhcCceEEEecCCHH
Q psy755 57 SQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREK----QITFLD-APVSGGTKAAQEATLTFMVGGDKS 131 (183)
Q Consensus 57 ~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~----g~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~ 131 (183)
...++..++ +++.+.++++++|+..+++.+.. .+.+.+... +.||.+ +++.+..+ .+--.+.+++
T Consensus 93 ~~~~k~~~~--~~l~~~~~~~~il~s~ts~~~~~--~la~~~~~~~r~ig~h~~~P~~~~~~ve------v~~g~~t~~e 162 (282)
T PRK05808 93 NMDLKKKIF--AQLDEIAKPEAILATNTSSLSIT--ELAAATKRPDKVIGMHFFNPVPVMKLVE------IIRGLATSDA 162 (282)
T ss_pred cHHHHHHHH--HHHHhhCCCCcEEEECCCCCCHH--HHHHhhCCCcceEEeeccCCcccCccEE------EeCCCCCCHH
Confidence 777775444 77888888898885444443333 445544321 444444 22222211 1111246889
Q ss_pred HHHHHHHHHHHhcCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q psy755 132 SLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAM 178 (183)
Q Consensus 132 ~~~~~~~l~~~~g~~~~~~g~~g~a~~~k~~~~~~~~~~~~~~~E~~ 178 (183)
..+.+.++++.+|+.++++++ ..+.....+.-.+....+..+.|+.
T Consensus 163 ~~~~~~~l~~~lGk~pv~~~d-~~g~i~~Ri~~~~~~ea~~~~~~gv 208 (282)
T PRK05808 163 THEAVEALAKKIGKTPVEVKN-APGFVVNRILIPMINEAIFVLAEGV 208 (282)
T ss_pred HHHHHHHHHHHcCCeeEEecC-ccChHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999964 4566766666666666666666554
No 65
>PLN02712 arogenate dehydrogenase
Probab=99.53 E-value=3.3e-13 Score=114.19 Aligned_cols=160 Identities=16% Similarity=0.215 Sum_probs=115.3
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhc-cCCEEEEecCChHHHHHHhcCCccccc-cCCCCc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLAS-GAEFIISMLPASQDVLDAYDGSDGILK-HAKPGV 78 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~adiVi~~vp~~~~~~~v~~~~~~l~~-~l~~~~ 78 (183)
||.++|++|.+.|++|++|||+... +.+.+.|+....++.+++. .+|+||+|+|. ..+..++ +++.. .+++|+
T Consensus 380 mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILavP~-~~~~~vi---~~l~~~~lk~g~ 454 (667)
T PLN02712 380 FGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCTSI-LSTEKVL---KSLPFQRLKRST 454 (667)
T ss_pred HHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECCCh-HHHHHHH---HHHHHhcCCCCc
Confidence 7999999999999999999999654 5555667766778888775 59999999996 6677776 66654 578899
Q ss_pred EEEeccCCCchhHHHHHHHHHhcCCcEE-eecccCCHHHHhcC--ceE-----EEecCCHH---HHHHHHHHHHHhcCCe
Q psy755 79 IVIDSSTVDPQVPQTLSNLAREKQITFL-DAPVSGGTKAAQEA--TLT-----FMVGGDKS---SLEKAKPILKCMGRNI 147 (183)
Q Consensus 79 iiid~s~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~--~~~-----~~~~g~~~---~~~~~~~l~~~~g~~~ 147 (183)
+|+|+++++......+.+.+ ..+.+|+ .||++|..... .| ... .+++++.+ ..+.+.++|+.+|.++
T Consensus 455 ivvDv~SvK~~~~~~~~~~l-~~~~~~v~~HPm~G~e~~~-~G~~~~~~lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~v 532 (667)
T PLN02712 455 LFVDVLSVKEFPRNLFLQHL-PQDFDILCTHPMFGPESGK-NGWNNLAFVFDKVRIGSDDRRVSRCDSFLDIFAREGCRM 532 (667)
T ss_pred EEEECCCccHHHHHHHHHhc-cCCCceEeeCCCCCccccc-cchhhhhhhccCcEeCCCcchHHHHHHHHHHHHHcCCEE
Confidence 99999999865555555544 3477888 59999966431 11 011 12234443 3455679999999999
Q ss_pred EEeCCcchHHHHHHHHHHHH
Q psy755 148 VHCGDSGNGQVAKLCNNMLL 167 (183)
Q Consensus 148 ~~~g~~g~a~~~k~~~~~~~ 167 (183)
+.+.+......+-.++.+..
T Consensus 533 v~ms~eeHD~~~A~vShLpH 552 (667)
T PLN02712 533 VEMSCAEHDWHAAGSQFITH 552 (667)
T ss_pred EEeCHHHHHHHHHHHHHHHH
Confidence 99998666666665554443
No 66
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.53 E-value=7.6e-13 Score=101.13 Aligned_cols=139 Identities=14% Similarity=0.184 Sum_probs=105.9
Q ss_pred CcHHHHHHHHhCCC----cEEEEcCCchhHHHHHH-cCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCC
Q psy755 1 MGSHMARNLLKNGH----DVIVYDKNTDASQTLAK-EGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAK 75 (183)
Q Consensus 1 mG~~iA~~l~~~g~----~V~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~ 75 (183)
||.+|+++|.+.|+ +|++|||++++.+.+.+ .|+..++++.+++++||+||+|+|+ +.+..++ +++.+.++
T Consensus 13 MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP-~~~~~vl---~~l~~~~~ 88 (272)
T PRK12491 13 MGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKP-DLYSSVI---NQIKDQIK 88 (272)
T ss_pred HHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeCh-HHHHHHH---HHHHHhhc
Confidence 89999999999885 69999999999888875 6776777888889999999999986 7889988 78888888
Q ss_pred CCcEEEeccCCCchhHHHHHHHHHhcCCcEEeecccCCHHHHhcCceEEEecC--CHHHHHHHHHHHHHhcCCe
Q psy755 76 PGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG--DKSSLEKAKPILKCMGRNI 147 (183)
Q Consensus 76 ~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~l~~~~g~~~ 147 (183)
++++||+.-...+.. .+.+.+.. ..+ +-..|...+.....|...+..+. +++..+.++++|+.+|...
T Consensus 89 ~~~lvISi~AGi~i~--~l~~~l~~-~~~-vvR~MPN~~~~vg~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~ 158 (272)
T PRK12491 89 NDVIVVTIAAGKSIK--STENEFDR-KLK-VIRVMPNTPVLVGEGMSALCFNEMVTEKDIKEVLNIFNIFGQTE 158 (272)
T ss_pred CCcEEEEeCCCCcHH--HHHHhcCC-CCc-EEEECCChHHHHcCceEEEEeCCCCCHHHHHHHHHHHHcCCCEE
Confidence 888999887665554 44444432 112 33456666777777764454432 4567789999999999853
No 67
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.53 E-value=1.5e-13 Score=108.43 Aligned_cols=171 Identities=20% Similarity=0.257 Sum_probs=118.9
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCc-----------------ccCCHHHHhccCCEEEEecCChHHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGAN-----------------MALSLSTLASGAEFIISMLPASQDVLDA 63 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~-----------------~~~~~~~~~~~adiVi~~vp~~~~~~~v 63 (183)
||..+|..|+++|++|++|+|++. .+.+.+.|.. ..++. +.+.++|+||+++|.++ ...+
T Consensus 13 mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~vk~~~-~~~~ 89 (341)
T PRK08229 13 IGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVTVKSAA-TADA 89 (341)
T ss_pred HHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEEecCcc-hHHH
Confidence 799999999999999999999764 3555554432 12233 55689999999998854 5666
Q ss_pred hcCCccccccCCCCcEEEeccCCCchhHHHHHHHHHhcCCcEEee--c---ccCCHHHH---hcCceEEEecCCHHHHHH
Q psy755 64 YDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDA--P---VSGGTKAA---QEATLTFMVGGDKSSLEK 135 (183)
Q Consensus 64 ~~~~~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~~--~---~~~~~~~~---~~~~~~~~~~g~~~~~~~ 135 (183)
+ +.+.+.++++++|++++++... ...+.+.+.+ .+++.+ + +..++... ..+++.+ + +.+.+++
T Consensus 90 ~---~~l~~~~~~~~iii~~~nG~~~-~~~l~~~~~~--~~~~~g~~~~~~~~~~pg~~~~~~~g~l~~--~-~~~~~~~ 160 (341)
T PRK08229 90 A---AALAGHARPGAVVVSFQNGVRN-ADVLRAALPG--ATVLAGMVPFNVISRGPGAFHQGTSGALAI--E-ASPALRP 160 (341)
T ss_pred H---HHHHhhCCCCCEEEEeCCCCCc-HHHHHHhCCC--CcEEEEEEEEEEEecCCceEEecCCCceEe--c-CCchHHH
Confidence 6 7888888899999988765433 3345544433 233332 1 22222222 2344333 2 2345688
Q ss_pred HHHHHHHhcCCeEEeCCcchHHHHHHHHHHHHHHHH--------------------HHHHHHHhcccC
Q psy755 136 AKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTM--------------------MGVAEAMNLGVK 183 (183)
Q Consensus 136 ~~~l~~~~g~~~~~~g~~g~a~~~k~~~~~~~~~~~--------------------~~~~E~~~~~~~ 183 (183)
++++|+..|.++.+.++.+.+.+.|++.|.+..... ..+.|++.++++
T Consensus 161 ~~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~~va~a 228 (341)
T PRK08229 161 FAAAFARAGLPLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREALRVLKA 228 (341)
T ss_pred HHHHHHhcCCCceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999997544442 678888888764
No 68
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.52 E-value=1.3e-14 Score=104.40 Aligned_cols=140 Identities=16% Similarity=0.302 Sum_probs=94.0
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHH-----------c-------------CCcccCCHHHHhccCCEEEEecCC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAK-----------E-------------GANMALSLSTLASGAEFIISMLPA 56 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~~adiVi~~vp~ 56 (183)
||..||..++.+|++|.+||++++..++..+ . .+...++++++. +||+||.++|.
T Consensus 10 mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~adlViEai~E 88 (180)
T PF02737_consen 10 MGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DADLVIEAIPE 88 (180)
T ss_dssp HHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TESEEEE-S-S
T ss_pred HHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hhheehhhccc
Confidence 8999999999999999999999987654322 1 245677888877 99999999999
Q ss_pred hHHHHHHhcCCccccccCCCCcEEEeccCCCchhHHHHHHHHHhc--CCcEEeecccCCHHHHhcCceEEEe---cCCHH
Q psy755 57 SQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREK--QITFLDAPVSGGTKAAQEATLTFMV---GGDKS 131 (183)
Q Consensus 57 ~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~ 131 (183)
..+.|.-+| .++.+..+++.++...|++.+.....-.-..+++ |.||.+.|-.. +++-++ ..+++
T Consensus 89 ~l~~K~~~~--~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~--------~lVEvv~~~~T~~~ 158 (180)
T PF02737_consen 89 DLELKQELF--AELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLM--------PLVEVVPGPKTSPE 158 (180)
T ss_dssp SHHHHHHHH--HHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT----------EEEEEE-TTS-HH
T ss_pred cHHHHHHHH--HHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccC--------ceEEEeCCCCCCHH
Confidence 999988776 7888889999998877776666542222112222 56666532211 122222 35889
Q ss_pred HHHHHHHHHHHhcCCeEEeC
Q psy755 132 SLEKAKPILKCMGRNIVHCG 151 (183)
Q Consensus 132 ~~~~~~~l~~~~g~~~~~~g 151 (183)
.++.+.++++.+|+.++.+.
T Consensus 159 ~~~~~~~~~~~~gk~pv~v~ 178 (180)
T PF02737_consen 159 TVDRVRALLRSLGKTPVVVK 178 (180)
T ss_dssp HHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEec
Confidence 99999999999999998774
No 69
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.51 E-value=2.7e-13 Score=104.05 Aligned_cols=164 Identities=17% Similarity=0.206 Sum_probs=117.9
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHH-----------cC-------------CcccCCHHHHhccCCEEEEecCC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAK-----------EG-------------ANMALSLSTLASGAEFIISMLPA 56 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~~adiVi~~vp~ 56 (183)
||+.||..++..||+|+++|++++.+++... .| +....++. .+++||+||.+++.
T Consensus 14 MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~~~DlVIEAv~E 92 (307)
T COG1250 14 MGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALKDADLVIEAVVE 92 (307)
T ss_pred hhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-HhccCCEEEEeccc
Confidence 8999999999988999999999876554432 11 23333443 57899999999999
Q ss_pred hHHHHHHhcCCccccccCCCCcEEEeccCCCchhHHHHHHHHHhc--CCcEEeec-ccCCHHHHhcCceEEEec---CCH
Q psy755 57 SQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREK--QITFLDAP-VSGGTKAAQEATLTFMVG---GDK 130 (183)
Q Consensus 57 ~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~--g~~~~~~~-~~~~~~~~~~~~~~~~~~---g~~ 130 (183)
...+++-+| +++.+..+++.++-..||+.|.+..+-....+++ |.||.+.| ++. ++-++. .++
T Consensus 93 ~levK~~vf--~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~---------LVEvI~g~~T~~ 161 (307)
T COG1250 93 DLELKKQVF--AELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMP---------LVEVIRGEKTSD 161 (307)
T ss_pred cHHHHHHHH--HHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcce---------eEEEecCCCCCH
Confidence 999998777 7888888888888766666666643333322333 77888743 332 222222 478
Q ss_pred HHHHHHHHHHHHhcCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy755 131 SSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEA 177 (183)
Q Consensus 131 ~~~~~~~~l~~~~g~~~~~~g~~g~a~~~k~~~~~~~~~~~~~~~E~ 177 (183)
+.++.+.++.+.+|+.++...+ -.+.++..+.-.+....+..+.|+
T Consensus 162 e~~~~~~~~~~~igK~~vv~~D-~pGFi~NRil~~~~~eA~~l~~eG 207 (307)
T COG1250 162 ETVERVVEFAKKIGKTPVVVKD-VPGFIVNRLLAALLNEAIRLLEEG 207 (307)
T ss_pred HHHHHHHHHHHHcCCCCEeecC-CCceehHhHHHHHHHHHHHHHHhC
Confidence 9999999999999987744444 557888888877777766666665
No 70
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.49 E-value=3.8e-12 Score=97.18 Aligned_cols=140 Identities=16% Similarity=0.238 Sum_probs=100.8
Q ss_pred CcHHHHHHHHhCC---CcEEEEcCCchhHHHHHHc-CCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCC
Q psy755 1 MGSHMARNLLKNG---HDVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 76 (183)
Q Consensus 1 mG~~iA~~l~~~g---~~V~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~ 76 (183)
||.+++..|.+.| ++|.+|+|++++.+++.+. |+...+++.+.+.++|+||+|+|+ ..++.++ +.+.+.+
T Consensus 13 mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~-~~~~~v~---~~l~~~~-- 86 (267)
T PRK11880 13 MASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKP-QVMEEVL---SELKGQL-- 86 (267)
T ss_pred HHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCH-HHHHHHH---HHHHhhc--
Confidence 7899999999998 7899999999998888775 776777888888999999999987 5578877 7777766
Q ss_pred CcEEEeccCCCchhHHHHHHHHHhcCCcEEeecccCCHHHHhcCceEEEec--CCHHHHHHHHHHHHHhcCCeEEeC
Q psy755 77 GVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVG--GDKSSLEKAKPILKCMGRNIVHCG 151 (183)
Q Consensus 77 ~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~l~~~~g~~~~~~g 151 (183)
+++|++++++.+.. .+.+.++ .+.+++. .+...+.....+...+..+ .+++.++.++.+|+.+|..+ ++.
T Consensus 87 ~~~vvs~~~gi~~~--~l~~~~~-~~~~iv~-~~P~~p~~~~~~~~~i~~~~~~~~~~~~~v~~l~~~lG~~~-~~~ 158 (267)
T PRK11880 87 DKLVVSIAAGVTLA--RLERLLG-ADLPVVR-AMPNTPALVGAGMTALTANALVSAEDRELVENLLSAFGKVV-WVD 158 (267)
T ss_pred CCEEEEecCCCCHH--HHHHhcC-CCCcEEE-ecCCchHHHcCceEEEecCCCCCHHHHHHHHHHHHhCCeEE-EEC
Confidence 57888887766543 3444332 3445555 1223344444444334433 37888899999999999744 444
No 71
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.47 E-value=5.1e-13 Score=114.23 Aligned_cols=165 Identities=12% Similarity=0.082 Sum_probs=117.6
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHH-----------c-------------CCcccCCHHHHhccCCEEEEecCC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAK-----------E-------------GANMALSLSTLASGAEFIISMLPA 56 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~~adiVi~~vp~ 56 (183)
||..||..++.+|++|++||++++.+++..+ . .+..+++. +.+++||+||.++|.
T Consensus 324 mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlViEav~E 402 (715)
T PRK11730 324 MGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFERVDVVVEAVVE 402 (715)
T ss_pred hHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcCCCEEEecccC
Confidence 8999999999999999999999987654322 1 23444555 447899999999999
Q ss_pred hHHHHHHhcCCccccccCCCCcEEEeccCCCchhHHHHHHHHHhc--CCcEEeecccCCHHHHhcCceEEEe---cCCHH
Q psy755 57 SQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREK--QITFLDAPVSGGTKAAQEATLTFMV---GGDKS 131 (183)
Q Consensus 57 ~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~ 131 (183)
...+|.-+| .++.+..+++.++...|++.|.+..+-.-..+++ |.||.+.|... +++-++ ..+++
T Consensus 403 ~l~~K~~vf--~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~--------~lVEvv~g~~T~~~ 472 (715)
T PRK11730 403 NPKVKAAVL--AEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRM--------PLVEVIRGEKTSDE 472 (715)
T ss_pred cHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCccccc--------ceEEeeCCCCCCHH
Confidence 999998877 7888899999998877777666643322211222 56666633211 122222 24789
Q ss_pred HHHHHHHHHHHhcCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy755 132 SLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEA 177 (183)
Q Consensus 132 ~~~~~~~l~~~~g~~~~~~g~~g~a~~~k~~~~~~~~~~~~~~~E~ 177 (183)
.++.+.++++.+|+.++.+.+ ..|.++..+...+....+..+.|+
T Consensus 473 ~~~~~~~~~~~lgk~pv~v~d-~pGfv~nRi~~~~~~ea~~lv~~G 517 (715)
T PRK11730 473 TIATVVAYASKMGKTPIVVND-CPGFFVNRVLFPYFAGFSQLLRDG 517 (715)
T ss_pred HHHHHHHHHHHhCCceEEecC-cCchhHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999864 667888777766665555555443
No 72
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=99.45 E-value=4e-12 Score=99.80 Aligned_cols=175 Identities=16% Similarity=0.165 Sum_probs=118.7
Q ss_pred CcHHHHHHHHhCC--------CcEEEEcC-----CchhHHHHHHc--------C------CcccCCHHHHhccCCEEEEe
Q psy755 1 MGSHMARNLLKNG--------HDVIVYDK-----NTDASQTLAKE--------G------ANMALSLSTLASGAEFIISM 53 (183)
Q Consensus 1 mG~~iA~~l~~~g--------~~V~~~~~-----~~~~~~~~~~~--------g------~~~~~~~~~~~~~adiVi~~ 53 (183)
||++||..|+++| ++|.+|.| +++-.+.+... + +..+++++++++++|+||++
T Consensus 10 wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal~~ADiIIlA 89 (342)
T TIGR03376 10 WGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAAKGADILVFV 89 (342)
T ss_pred HHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHHhcCCEEEEE
Confidence 6999999999999 99999998 34434444321 1 23456888999999999999
Q ss_pred cCChHHHHHHhcCCccccccCCCCcEEEeccCCCc-h--hHHHHHHHHHh---cCCcEEeecccCCHHHHhcCceEEEec
Q psy755 54 LPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDP-Q--VPQTLSNLARE---KQITFLDAPVSGGTKAAQEATLTFMVG 127 (183)
Q Consensus 54 vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~~-~--~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (183)
+|+ +.++.++ +.+.++++++++++.++.... . +...+.+.+.+ ..+.++..|.+...........+.+.+
T Consensus 90 VPs-~~i~~vl---~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~~~~~lsGP~~A~Eva~~~pt~~~ia~ 165 (342)
T TIGR03376 90 IPH-QFLEGIC---KQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGIPCGVLSGANLANEVAKEKFSETTVGY 165 (342)
T ss_pred CCh-HHHHHHH---HHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCCCeEEeeCcchHHHHHcCCCceEEEEe
Confidence 987 7788887 889999988999998886532 2 22233333332 223334455544444444455555666
Q ss_pred CC----HHHHHHHHHHHHHhcCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy755 128 GD----KSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLG 181 (183)
Q Consensus 128 g~----~~~~~~~~~l~~~~g~~~~~~g~~g~a~~~k~~~~~~~~~~~~~~~E~~~~~ 181 (183)
.+ .+..+.++++|+.=-.+++...|.-..+..-.+.|.+.-. +++.+++.++
T Consensus 166 ~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa--~Gi~~Gl~~g 221 (342)
T TIGR03376 166 RDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIA--AGFVDGLGWG 221 (342)
T ss_pred CCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHH--HHHHHhcCCC
Confidence 66 7777888888887666677777766677777777776655 5566555443
No 73
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.45 E-value=3e-12 Score=101.22 Aligned_cols=174 Identities=14% Similarity=0.085 Sum_probs=122.0
Q ss_pred CcHHHHHHHHhCC-------CcEEEEcCCch-----hHHHHHHc--------------CCcccCCHHHHhccCCEEEEec
Q psy755 1 MGSHMARNLLKNG-------HDVIVYDKNTD-----ASQTLAKE--------------GANMALSLSTLASGAEFIISML 54 (183)
Q Consensus 1 mG~~iA~~l~~~g-------~~V~~~~~~~~-----~~~~~~~~--------------g~~~~~~~~~~~~~adiVi~~v 54 (183)
||++||..|+++| ++|.+|.|+++ ..+.+... ++..++++.++++++|+|+++|
T Consensus 22 wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav~~aDiIvlAV 101 (365)
T PTZ00345 22 WGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAVEDADLLIFVI 101 (365)
T ss_pred HHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHHhcCCEEEEEc
Confidence 7999999999997 79999999986 24555432 2344678888999999999999
Q ss_pred CChHHHHHHhcCCccccc--cCCCCcEEEeccCCCch-h------HHHHHHHHHhcCCcEEeecccCCHHHHhcCceEEE
Q psy755 55 PASQDVLDAYDGSDGILK--HAKPGVIVIDSSTVDPQ-V------PQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFM 125 (183)
Q Consensus 55 p~~~~~~~v~~~~~~l~~--~l~~~~iiid~s~~~~~-~------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 125 (183)
|+ +.++.++ +++.+ .++++.++|.++.+... + ++.+.+.+. ..+.++..|.+...........+.+
T Consensus 102 Ps-q~l~~vl---~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~-~~~~~LsGPs~A~Eva~~~pt~~vi 176 (365)
T PTZ00345 102 PH-QFLESVL---SQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELG-IPCCALSGANVANDVAREEFSEATI 176 (365)
T ss_pred Ch-HHHHHHH---HHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhC-CCeEEEECCCHHHHHHcCCCcEEEE
Confidence 87 7789988 88888 77777788887765321 1 223333331 2233445554444444445666667
Q ss_pred ecCCHHHHHHHHHHHHHhcCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy755 126 VGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLG 181 (183)
Q Consensus 126 ~~g~~~~~~~~~~l~~~~g~~~~~~g~~g~a~~~k~~~~~~~~~~~~~~~E~~~~~ 181 (183)
.+.+.+..+.++++|..=-.+++...|.-..++.-.+.|.+.-. +++++++.++
T Consensus 177 as~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa--~Gi~dGl~~G 230 (365)
T PTZ00345 177 GCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALA--AGFCDGLGLG 230 (365)
T ss_pred EeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHH--HHHHHhcCCC
Confidence 77788888899999987777777777766677777777776655 6666665543
No 74
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.45 E-value=3.7e-12 Score=100.48 Aligned_cols=171 Identities=12% Similarity=0.187 Sum_probs=120.5
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcC---------------CcccCCHHHHhccCCEEEEecCChHHHHHHhc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEG---------------ANMALSLSTLASGAEFIISMLPASQDVLDAYD 65 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g---------------~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~ 65 (183)
||+++|..|+++| +|++|.|+++..+.+.+.+ +...+++.+.++++|+||+++|. +.++.++
T Consensus 18 ~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavps-~~~~~vl- 94 (341)
T PRK12439 18 WGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVPS-HGFRGVL- 94 (341)
T ss_pred HHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeCH-HHHHHHH-
Confidence 7999999999999 6889999999888777532 12345677778899999999986 6688887
Q ss_pred CCccccccCCCCcEEEeccCCCchh-----HHHHHHHHHhcCCcEEeecccCCHHHHhcCc--eEEEecCCHHHHHHHHH
Q psy755 66 GSDGILKHAKPGVIVIDSSTVDPQV-----PQTLSNLAREKQITFLDAPVSGGTKAAQEAT--LTFMVGGDKSSLEKAKP 138 (183)
Q Consensus 66 ~~~~l~~~l~~~~iiid~s~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~ 138 (183)
+++.+.++++++++.+++..... .+.+.+.+.......+..|-+.. ....+. ..++.+.+++..+.+++
T Consensus 95 --~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~--ev~~g~~t~~via~~~~~~~~~v~~ 170 (341)
T PRK12439 95 --TELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAR--EVAEGYAAAAVLAMPDQHLATRLSP 170 (341)
T ss_pred --HHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHH--HHHcCCCeEEEEEeCCHHHHHHHHH
Confidence 88999998888888888765442 22333332211111233332221 111233 33444557777789999
Q ss_pred HHHHhcCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy755 139 ILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNL 180 (183)
Q Consensus 139 l~~~~g~~~~~~g~~g~a~~~k~~~~~~~~~~~~~~~E~~~~ 180 (183)
+|+.-+.+++...+.-..++.|.+.|.+... +++.+++.+
T Consensus 171 lf~~~~~~v~~s~Di~gve~~~alkNv~aia--~G~~~g~~~ 210 (341)
T PRK12439 171 LFRTRRFRVYTTDDVVGVEMAGALKNVFAIA--VGMGYSLGI 210 (341)
T ss_pred HhCCCCEEEEEcCchHHHHHHHHHHHHHHHH--HHHHHHhcC
Confidence 9999899888888988899999999998876 566655544
No 75
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.45 E-value=8.4e-13 Score=112.76 Aligned_cols=165 Identities=13% Similarity=0.127 Sum_probs=118.8
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHH-----------c-------------CCcccCCHHHHhccCCEEEEecCC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAK-----------E-------------GANMALSLSTLASGAEFIISMLPA 56 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~~adiVi~~vp~ 56 (183)
||..||..++.+|++|++||++++.+++..+ . .+..+.+. +.+++||+||.++|.
T Consensus 324 mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlViEav~E 402 (714)
T TIGR02437 324 MGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDNVDIVVEAVVE 402 (714)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcCCCEEEEcCcc
Confidence 8999999999999999999999988765332 1 23344455 446899999999999
Q ss_pred hHHHHHHhcCCccccccCCCCcEEEeccCCCchhHHHHHHHHHhc--CCcEEeecccCCHHHHhcCceEEEe---cCCHH
Q psy755 57 SQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREK--QITFLDAPVSGGTKAAQEATLTFMV---GGDKS 131 (183)
Q Consensus 57 ~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~ 131 (183)
...+|.-+| .++.+..++++++...||+.+.+..+-.-..+++ |.||.+.|-.. +++-++ ..+++
T Consensus 403 ~l~~K~~vf--~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~--------~lvEvv~g~~Ts~~ 472 (714)
T TIGR02437 403 NPKVKAAVL--AEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRM--------PLVEVIRGEKSSDE 472 (714)
T ss_pred cHHHHHHHH--HHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccC--------ceEeecCCCCCCHH
Confidence 999988777 7888899999998877777666643322211222 66776633211 122222 24789
Q ss_pred HHHHHHHHHHHhcCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy755 132 SLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEA 177 (183)
Q Consensus 132 ~~~~~~~l~~~~g~~~~~~g~~g~a~~~k~~~~~~~~~~~~~~~E~ 177 (183)
+++.+.++++.+|+.++.+.+ ..+.+...+...+....+..+.|+
T Consensus 473 ~~~~~~~~~~~lgk~pv~v~d-~pGfi~NRl~~~~~~ea~~l~~eG 517 (714)
T TIGR02437 473 TIATVVAYASKMGKTPIVVND-CPGFFVNRVLFPYFGGFSKLLRDG 517 (714)
T ss_pred HHHHHHHHHHHcCCEEEEeCC-cccchHHHHHHHHHHHHHHHHHCC
Confidence 999999999999999999974 567888777766666655555554
No 76
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.44 E-value=4.5e-12 Score=96.33 Aligned_cols=134 Identities=16% Similarity=0.198 Sum_probs=94.3
Q ss_pred CcHHHHHHHHhCCCc---EEEEcCCchhHHHHHHc--CCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCC
Q psy755 1 MGSHMARNLLKNGHD---VIVYDKNTDASQTLAKE--GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAK 75 (183)
Q Consensus 1 mG~~iA~~l~~~g~~---V~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~ 75 (183)
||.+|++.|.+.|++ +.+|+|++++.+.+.+. +...++++.++++++|+||+++|+ +.+..++ +++. +.
T Consensus 11 mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~p-~~~~~vl---~~l~--~~ 84 (258)
T PRK06476 11 ITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVRP-QIAEEVL---RALR--FR 84 (258)
T ss_pred HHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeCH-HHHHHHH---HHhc--cC
Confidence 789999999998864 57899999998887765 456677888888999999999984 7778877 5552 56
Q ss_pred CCcEEEeccCCCchhHHHHHHHHHhcCCcEEeecccCCHHHHhcCceEEEecCCHHHHHHHHHHHHHhcCCeEE
Q psy755 76 PGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVH 149 (183)
Q Consensus 76 ~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~ 149 (183)
++++|+++... .....+.+.+......+..+|... .....+. +.++.++ +.++++|+.+|..++.
T Consensus 85 ~~~~vis~~ag--~~~~~l~~~~~~~~~~~r~~P~~~--~a~~~g~-t~~~~~~----~~~~~l~~~lG~~~~~ 149 (258)
T PRK06476 85 PGQTVISVIAA--TDRAALLEWIGHDVKLVRAIPLPF--VAERKGV-TAIYPPD----PFVAALFDALGTAVEC 149 (258)
T ss_pred CCCEEEEECCC--CCHHHHHHHhCCCCCEEEECCCCh--hhhCCCC-eEecCCH----HHHHHHHHhcCCcEEE
Confidence 78999986643 444455555543333444566632 2223343 4444442 5889999999987664
No 77
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.41 E-value=1.3e-12 Score=111.87 Aligned_cols=165 Identities=16% Similarity=0.188 Sum_probs=118.1
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHH-----------c-------------CCcccCCHHHHhccCCEEEEecCC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAK-----------E-------------GANMALSLSTLASGAEFIISMLPA 56 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~~adiVi~~vp~ 56 (183)
||..||..++.+|++|++||++++.+++..+ . .+..+++.. .+++||+||.++|.
T Consensus 346 MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~aDlViEAv~E 424 (737)
T TIGR02441 346 MGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKNADMVIEAVFE 424 (737)
T ss_pred hHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-HhccCCeehhhccc
Confidence 8999999999999999999999988665322 1 234445554 56899999999999
Q ss_pred hHHHHHHhcCCccccccCCCCcEEEeccCCCchhHHHHHHHHHhc--CCcEEeecccCCHHHHhcCceEEEe---cCCHH
Q psy755 57 SQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREK--QITFLDAPVSGGTKAAQEATLTFMV---GGDKS 131 (183)
Q Consensus 57 ~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~ 131 (183)
...+|.-+| .++.+..+++.++...||+.+.+..+-.-..+++ |.||.+.+-... ++-++ ..+++
T Consensus 425 ~l~~K~~vf--~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~--------LvEvv~g~~Ts~~ 494 (737)
T TIGR02441 425 DLSLKHKVI--KEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQ--------LLEIITHDGTSKD 494 (737)
T ss_pred cHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCc--------eEEEeCCCCCCHH
Confidence 999998776 7888899999998766666666543322111222 667766332211 22222 35889
Q ss_pred HHHHHHHHHHHhcCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy755 132 SLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEA 177 (183)
Q Consensus 132 ~~~~~~~l~~~~g~~~~~~g~~g~a~~~k~~~~~~~~~~~~~~~E~ 177 (183)
+++.+..+++.+|+.++.+.+ ..|.++..+...+....+..+.|+
T Consensus 495 ~~~~~~~~~~~lgk~pv~v~d-~pGFi~NRi~~~~~~ea~~lv~eG 539 (737)
T TIGR02441 495 TLASAVAVGLKQGKVVIVVKD-GPGFYTTRCLGPMLAEVIRLLQEG 539 (737)
T ss_pred HHHHHHHHHHHCCCeEEEECC-cCCchHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999865 557787777766666665555554
No 78
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.41 E-value=2.7e-12 Score=109.60 Aligned_cols=165 Identities=13% Similarity=0.096 Sum_probs=116.0
Q ss_pred CcHHHHHHHH-hCCCcEEEEcCCchhHHHHHH-----------c-------------CCcccCCHHHHhccCCEEEEecC
Q psy755 1 MGSHMARNLL-KNGHDVIVYDKNTDASQTLAK-----------E-------------GANMALSLSTLASGAEFIISMLP 55 (183)
Q Consensus 1 mG~~iA~~l~-~~g~~V~~~~~~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~~adiVi~~vp 55 (183)
||..||..++ +.|++|++||++++.+++..+ . .+...+++ +.+++||+||.++|
T Consensus 315 mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~adlViEav~ 393 (699)
T TIGR02440 315 MGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFKDVDIVIEAVF 393 (699)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhccCCEEEEecc
Confidence 8999999998 589999999999986554321 1 23345555 45789999999999
Q ss_pred ChHHHHHHhcCCccccccCCCCcEEEeccCCCchhHHHHHHHHHhc--CCcEEeecccCCHHHHhcCceEEEe---cCCH
Q psy755 56 ASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREK--QITFLDAPVSGGTKAAQEATLTFMV---GGDK 130 (183)
Q Consensus 56 ~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~---~g~~ 130 (183)
....+|.-+| .++.+..++++++...|++.+.+..+-.-..+++ |.||++.|-... ++-++ ..++
T Consensus 394 E~l~~K~~v~--~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~--------lVEvv~g~~T~~ 463 (699)
T TIGR02440 394 EDLALKHQMV--KDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMP--------LVEVIPHAGTSE 463 (699)
T ss_pred ccHHHHHHHH--HHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCc--------eEEEeCCCCCCH
Confidence 9999988776 7888888899888776666666543222111122 566666332211 22222 3588
Q ss_pred HHHHHHHHHHHHhcCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy755 131 SSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEA 177 (183)
Q Consensus 131 ~~~~~~~~l~~~~g~~~~~~g~~g~a~~~k~~~~~~~~~~~~~~~E~ 177 (183)
+.++.+.++++.+|+.++.+.+ ..|.....+...+....+..+.|+
T Consensus 464 ~~~~~~~~~~~~~gk~pv~v~d-~pGfi~nRl~~~~~~Ea~~l~~~G 509 (699)
T TIGR02440 464 QTIATTVALAKKQGKTPIVVAD-KAGFYVNRILAPYMNEAARLLLEG 509 (699)
T ss_pred HHHHHHHHHHHHcCCeEEEEcc-ccchHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999999965 567887777666666555555543
No 79
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.39 E-value=4.4e-12 Score=108.48 Aligned_cols=165 Identities=13% Similarity=0.105 Sum_probs=118.3
Q ss_pred CcHHHHHHHH-hCCCcEEEEcCCchhHHHHHH-----------c-------------CCcccCCHHHHhccCCEEEEecC
Q psy755 1 MGSHMARNLL-KNGHDVIVYDKNTDASQTLAK-----------E-------------GANMALSLSTLASGAEFIISMLP 55 (183)
Q Consensus 1 mG~~iA~~l~-~~g~~V~~~~~~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~~adiVi~~vp 55 (183)
||..||..++ ..|++|++||++++.+++..+ . .+..+++. +.+++||+||.++|
T Consensus 320 mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~aDlViEav~ 398 (708)
T PRK11154 320 MGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFKHADVVIEAVF 398 (708)
T ss_pred hhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhccCCEEeeccc
Confidence 8999999999 889999999999987655321 1 23444555 45789999999999
Q ss_pred ChHHHHHHhcCCccccccCCCCcEEEeccCCCchhHHHHHHHHHhc--CCcEEeecccCCHHHHhcCceEEEe---cCCH
Q psy755 56 ASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREK--QITFLDAPVSGGTKAAQEATLTFMV---GGDK 130 (183)
Q Consensus 56 ~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~---~g~~ 130 (183)
....+|.-+| .++.+..++++++...|++.+.+..+-.-..+++ |.||.+.|-.. +++-++ ..++
T Consensus 399 E~~~~K~~v~--~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~--------~lVEvv~g~~Ts~ 468 (708)
T PRK11154 399 EDLALKQQMV--AEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKM--------PLVEVIPHAKTSA 468 (708)
T ss_pred ccHHHHHHHH--HHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccC--------ceEEEECCCCCCH
Confidence 9999988776 7888899999999877777666643332222222 56666633221 122222 3588
Q ss_pred HHHHHHHHHHHHhcCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy755 131 SSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEA 177 (183)
Q Consensus 131 ~~~~~~~~l~~~~g~~~~~~g~~g~a~~~k~~~~~~~~~~~~~~~E~ 177 (183)
+.++.+..+++.+|+.++.+.+ ..|.....+...+....+..+.|+
T Consensus 469 ~~~~~~~~~~~~~gk~pv~v~d-~pGfi~nRl~~~~~~EA~~lv~eG 514 (708)
T PRK11154 469 ETIATTVALAKKQGKTPIVVRD-GAGFYVNRILAPYINEAARLLLEG 514 (708)
T ss_pred HHHHHHHHHHHHcCCceEEEec-cCcHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999998864 667788777777666666665554
No 80
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.38 E-value=1.8e-11 Score=96.11 Aligned_cols=162 Identities=14% Similarity=0.180 Sum_probs=104.0
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcC--C------------cccCCHHHHh-ccCCEEEEecCChHHHHHHhc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEG--A------------NMALSLSTLA-SGAEFIISMLPASQDVLDAYD 65 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g--~------------~~~~~~~~~~-~~adiVi~~vp~~~~~~~v~~ 65 (183)
||..+|..|.++|++|.+|+|+++.++.+.+.+ . ....++.+.+ ..+|+||++||+ ..++.++
T Consensus 11 ~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavks-~~~~~~l- 88 (326)
T PRK14620 11 FGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVPT-QQLRTIC- 88 (326)
T ss_pred HHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeCH-HHHHHHH-
Confidence 799999999999999999999998887776531 1 1234555665 589999999987 6688887
Q ss_pred CCccccc-cCCCCcEEEeccCCCchh-----HHHHHHHHHhcCCcEEeecccCCHHHHhcCceEEEecCCHHHHHHHHHH
Q psy755 66 GSDGILK-HAKPGVIVIDSSTVDPQV-----PQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPI 139 (183)
Q Consensus 66 ~~~~l~~-~l~~~~iiid~s~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 139 (183)
+.+.+ .+.+++.|+..++..... .+.+.+.++...+..+..|-............+.+.+.+.+..+.+.++
T Consensus 89 --~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 166 (326)
T PRK14620 89 --QQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPSFAKEIAEKLPCSIVLAGQNETLGSSLISK 166 (326)
T ss_pred --HHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCcHHHHHHcCCCcEEEEecCCHHHHHHHHHH
Confidence 88887 887777666666554221 2222332222111122222211111111122233444555555677777
Q ss_pred HHHhcCCeEEeCCcchHHHHHHHHHHH
Q psy755 140 LKCMGRNIVHCGDSGNGQVAKLCNNML 166 (183)
Q Consensus 140 ~~~~g~~~~~~g~~g~a~~~k~~~~~~ 166 (183)
|+.-+.+++...+.-..++.|.+.|.+
T Consensus 167 l~~~~~~~~~~~Di~g~~~~k~~~N~i 193 (326)
T PRK14620 167 LSNENLKIIYSQDIIGVQIGAALKNII 193 (326)
T ss_pred HCCCCeEEEecCcchhhhhHHHHHHHH
Confidence 777777777778888899999999986
No 81
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.35 E-value=7.1e-11 Score=89.20 Aligned_cols=138 Identities=15% Similarity=0.228 Sum_probs=103.9
Q ss_pred CcHHHHHHHHhCC----CcEEEEcCCchhHHHHH-HcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCC
Q psy755 1 MGSHMARNLLKNG----HDVIVYDKNTDASQTLA-KEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAK 75 (183)
Q Consensus 1 mG~~iA~~l~~~g----~~V~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~ 75 (183)
||.+|+..|.+.| .+|++.+|++++.+.+. ..|+..+++..+++..+|+||++|++ +.++.++ ..+.+ ..
T Consensus 12 Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavKP-q~~~~vl---~~l~~-~~ 86 (266)
T COG0345 12 MGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVKP-QDLEEVL---SKLKP-LT 86 (266)
T ss_pred HHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeCh-HhHHHHH---HHhhc-cc
Confidence 8999999999999 58999999999987444 44766677788999999999999965 7888888 78888 78
Q ss_pred CCcEEEeccCCCchhHHHHHHHHHhcCCcEEeecccCCHHHHhcCceEEEec--CCHHHHHHHHHHHHHhcCCeE
Q psy755 76 PGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVG--GDKSSLEKAKPILKCMGRNIV 148 (183)
Q Consensus 76 ~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~l~~~~g~~~~ 148 (183)
++++||......+. ..+.+++. +.+++ ..|...+.....|...+..+ .+++..+.+.++|+.+|..++
T Consensus 87 ~~~lvISiaAGv~~--~~l~~~l~--~~~vv-R~MPNt~a~vg~g~t~i~~~~~~~~~~~~~v~~l~~~~G~v~~ 156 (266)
T COG0345 87 KDKLVISIAAGVSI--ETLERLLG--GLRVV-RVMPNTPALVGAGVTAISANANVSEEDKAFVEALLSAVGKVVE 156 (266)
T ss_pred CCCEEEEEeCCCCH--HHHHHHcC--CCceE-EeCCChHHHHcCcceeeecCccCCHHHHHHHHHHHHhcCCeEE
Confidence 99999976655444 34555554 33333 34556667777776444443 367888899999999998543
No 82
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.35 E-value=3.5e-12 Score=89.93 Aligned_cols=127 Identities=18% Similarity=0.313 Sum_probs=86.0
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcC--------------CcccCCHHHHhccCCEEEEecCChHHHHHHhcC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEG--------------ANMALSLSTLASGAEFIISMLPASQDVLDAYDG 66 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g--------------~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~ 66 (183)
||.++|..|+++|++|.+|+|+++.++.+.+.+ +..+++++++++++|+|++++|. +..+.++
T Consensus 10 ~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs-~~~~~~~-- 86 (157)
T PF01210_consen 10 WGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPS-QAHREVL-- 86 (157)
T ss_dssp HHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-G-GGHHHHH--
T ss_pred HHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccH-HHHHHHH--
Confidence 689999999999999999999999888887642 33567899999999999999988 5678887
Q ss_pred CccccccCCCCcEEEeccCCC-chh----HHHHHHHHHhcCCcEEeecccCCHHHHhcCceEEEecCCHH
Q psy755 67 SDGILKHAKPGVIVIDSSTVD-PQV----PQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKS 131 (183)
Q Consensus 67 ~~~l~~~l~~~~iiid~s~~~-~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 131 (183)
+.+.++++++++++.++.+. +.+ .+.+.+.+....+.++.+|.+...........+.+.+.+.+
T Consensus 87 -~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~Ei~~~~pt~~~~as~~~~ 155 (157)
T PF01210_consen 87 -EQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAEEIAEGKPTAVVIASKNEE 155 (157)
T ss_dssp -HHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HHHHHTT--EEEEEEESSHH
T ss_pred -HHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHHHHHcCCCeEEEEEecccc
Confidence 99999999999999888664 222 33344444333345555665554444444554445555544
No 83
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.33 E-value=5.4e-12 Score=85.31 Aligned_cols=99 Identities=23% Similarity=0.397 Sum_probs=66.7
Q ss_pred CcHHHHHHHHhCCCcEEE-EcCCchhHHHHHHc-CCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCcccccc--CCC
Q psy755 1 MGSHMARNLLKNGHDVIV-YDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKH--AKP 76 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~-~~~~~~~~~~~~~~-g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~--l~~ 76 (183)
.|..|++.|.++||+|.. |+|++++.+++.+. +.....++.+.++++|++|++||+. .+..+. +++... +.+
T Consensus 21 VG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDd-aI~~va---~~La~~~~~~~ 96 (127)
T PF10727_consen 21 VGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDD-AIAEVA---EQLAQYGAWRP 96 (127)
T ss_dssp CCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CC-HHHHHH---HHHHCC--S-T
T ss_pred HHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechH-HHHHHH---HHHHHhccCCC
Confidence 478999999999999876 58999888887765 4444557788899999999999995 688887 888876 889
Q ss_pred CcEEEeccCCCchhHHHHHHHHHhcCCcEE
Q psy755 77 GVIVIDSSTVDPQVPQTLSNLAREKQITFL 106 (183)
Q Consensus 77 ~~iiid~s~~~~~~~~~~~~~~~~~g~~~~ 106 (183)
|++|+++|...+.....- +.++|....
T Consensus 97 g~iVvHtSGa~~~~vL~p---~~~~Ga~~~ 123 (127)
T PF10727_consen 97 GQIVVHTSGALGSDVLAP---ARERGAIVA 123 (127)
T ss_dssp T-EEEES-SS--GGGGHH---HHHTT-EEE
T ss_pred CcEEEECCCCChHHhhhh---HHHCCCeEE
Confidence 999999999888876443 445555433
No 84
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.31 E-value=9.2e-11 Score=88.42 Aligned_cols=139 Identities=13% Similarity=0.169 Sum_probs=96.3
Q ss_pred CcHHHHHHHHhCCC---c-EEEEcC-CchhHHHHHHc-CCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccC
Q psy755 1 MGSHMARNLLKNGH---D-VIVYDK-NTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHA 74 (183)
Q Consensus 1 mG~~iA~~l~~~g~---~-V~~~~~-~~~~~~~~~~~-g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l 74 (183)
||.+++..|.++|+ + +++++| ++++.+.+.+. ++....++.++++++|+||+++|+ +..+.++ +++.+.+
T Consensus 15 mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~-~~~~~v~---~~l~~~~ 90 (245)
T PRK07634 15 MAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPP-SAHEELL---AELSPLL 90 (245)
T ss_pred HHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCH-HHHHHHH---HHHHhhc
Confidence 78999999998873 3 777887 46777777654 666667888889999999999987 5567777 7777776
Q ss_pred CCCcEEEeccCCCchhHHHHHHHHHhcCCcEEe-ecccCCHHHHhcCceEEEe--cCCHHHHHHHHHHHHHhcCCeEE
Q psy755 75 KPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGTKAAQEATLTFMV--GGDKSSLEKAKPILKCMGRNIVH 149 (183)
Q Consensus 75 ~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~l~~~~g~~~~~ 149 (183)
+ +++|++++.+.... .+.+.+.. +..++- +| ..+.....+...+.. ..+++..+.++++|+.+|..++.
T Consensus 91 ~-~~~vis~~~gi~~~--~l~~~~~~-~~~v~r~~P--n~a~~v~~g~~~~~~~~~~~~~~~~~v~~lf~~~G~~~~~ 162 (245)
T PRK07634 91 S-NQLVVTVAAGIGPS--YLEERLPK-GTPVAWIMP--NTAAEIGKSISLYTMGQSVNETHKETLQLILKGIGTSQLC 162 (245)
T ss_pred c-CCEEEEECCCCCHH--HHHHHcCC-CCeEEEECC--cHHHHHhcCCeEEeeCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 5 67888888765554 34444432 222222 34 333444455333332 35778889999999999997753
No 85
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.29 E-value=1.1e-10 Score=89.54 Aligned_cols=138 Identities=13% Similarity=0.160 Sum_probs=98.5
Q ss_pred CcHHHHHHHHhCC----CcEEEEcCCc-hhHHHHHHc--CCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCcccccc
Q psy755 1 MGSHMARNLLKNG----HDVIVYDKNT-DASQTLAKE--GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKH 73 (183)
Q Consensus 1 mG~~iA~~l~~~g----~~V~~~~~~~-~~~~~~~~~--g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~ 73 (183)
||.++++.|.+.| ++|++|+|++ ++.+.+... +.....++.++++++|+||+|+|+ +.++.++ +++.+.
T Consensus 12 mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp-~~~~~vl---~~l~~~ 87 (277)
T PRK06928 12 MADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPP-LAVLPLL---KDCAPV 87 (277)
T ss_pred HHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCH-HHHHHHH---HHHHhh
Confidence 7999999999998 7899999865 344544443 234456788888999999999985 6688887 788888
Q ss_pred CCCCcEEEeccCCCchhHHHHHHHHHhcCCcEEeecccCCHHHHhcCceEEEec--CCHHHHHHHHHHHHHhcCCe
Q psy755 74 AKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVG--GDKSSLEKAKPILKCMGRNI 147 (183)
Q Consensus 74 l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~l~~~~g~~~ 147 (183)
++++++|++..+..+.. .+.+.++. .+ +-..|...+.....|...+..+ -+++..+.++.+|+.+|..+
T Consensus 88 l~~~~~ivS~~aGi~~~--~l~~~~~~--~~-vvR~MPN~~~~~g~g~t~~~~~~~~~~~~~~~v~~l~~~~G~~~ 158 (277)
T PRK06928 88 LTPDRHVVSIAAGVSLD--DLLEITPG--LQ-VSRLIPSLTSAVGVGTSLVAHAETVNEANKSRLEETLSHFSHVM 158 (277)
T ss_pred cCCCCEEEEECCCCCHH--HHHHHcCC--CC-EEEEeCccHHHHhhhcEEEecCCCCCHHHHHHHHHHHHhCCCEE
Confidence 88888888877665444 45555432 12 3334556667777776444433 25577789999999999743
No 86
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.29 E-value=5.7e-11 Score=85.82 Aligned_cols=136 Identities=21% Similarity=0.290 Sum_probs=85.5
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHc--------------------CCcccCCHHHHhccCCEEEEecCChH--
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKE--------------------GANMALSLSTLASGAEFIISMLPASQ-- 58 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~--------------------g~~~~~~~~~~~~~adiVi~~vp~~~-- 58 (183)
+|..+|..|+++||+|++||.++++++.+.+. +...+++..+++.++|++|+|||.|.
T Consensus 11 vGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~~I~VpTP~~~ 90 (185)
T PF03721_consen 11 VGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVVFICVPTPSDE 90 (185)
T ss_dssp THHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEEEE----EBET
T ss_pred chHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceEEEecCCCccc
Confidence 58899999999999999999999988776542 23456677888899999999998663
Q ss_pred -------HHHHHhcCCccccccCCCCcEEEeccCCCchhHHHHH-HHHHhcC-----CcEEeecccC--CH--HHHhcCc
Q psy755 59 -------DVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLS-NLAREKQ-----ITFLDAPVSG--GT--KAAQEAT 121 (183)
Q Consensus 59 -------~~~~v~~~~~~l~~~l~~~~iiid~s~~~~~~~~~~~-~~~~~~g-----~~~~~~~~~~--~~--~~~~~~~ 121 (183)
.+..++ +.+.+.++++++|+.-|+..|.+.+.+. ..+++.+ +++..+|-+- |. ......+
T Consensus 91 ~~~~Dls~v~~a~---~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G~a~~d~~~~~ 167 (185)
T PF03721_consen 91 DGSPDLSYVESAI---ESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREGRAIEDFRNPP 167 (185)
T ss_dssp TTSBETHHHHHHH---HHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TTSHHHHHHSSS
T ss_pred cCCccHHHHHHHH---HHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCCCcchhccCCC
Confidence 345555 7888999999999999999999998555 4444433 3455566332 21 1122233
Q ss_pred eEEEecCCHHHHHHHHHH
Q psy755 122 LTFMVGGDKSSLEKAKPI 139 (183)
Q Consensus 122 ~~~~~~g~~~~~~~~~~l 139 (183)
.++.-..++...+.+++|
T Consensus 168 rvV~G~~~~~~~~~~~~l 185 (185)
T PF03721_consen 168 RVVGGCDDESAEERLKEL 185 (185)
T ss_dssp EEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCcHHHHHHHhcC
Confidence 233333455554465553
No 87
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.28 E-value=5.5e-12 Score=81.57 Aligned_cols=80 Identities=31% Similarity=0.493 Sum_probs=66.8
Q ss_pred CcHHHHHHHHhCC---CcEEEE-cCCchhHHHHHHc-CCcccC-CHHHHhccCCEEEEecCChHHHHHHhcCCccccccC
Q psy755 1 MGSHMARNLLKNG---HDVIVY-DKNTDASQTLAKE-GANMAL-SLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHA 74 (183)
Q Consensus 1 mG~~iA~~l~~~g---~~V~~~-~~~~~~~~~~~~~-g~~~~~-~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l 74 (183)
||.+|++.|.+.| ++|.++ +|++++.+++.+. +..... +..++++++|+||+|+|+ +.+..++ +++ +..
T Consensus 10 mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p-~~~~~v~---~~i-~~~ 84 (96)
T PF03807_consen 10 MGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKP-QQLPEVL---SEI-PHL 84 (96)
T ss_dssp HHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-G-GGHHHHH---HHH-HHH
T ss_pred HHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECH-HHHHHHH---HHH-hhc
Confidence 7999999999999 899955 9999999988765 555555 899999999999999976 6788887 777 778
Q ss_pred CCCcEEEeccC
Q psy755 75 KPGVIVIDSST 85 (183)
Q Consensus 75 ~~~~iiid~s~ 85 (183)
.+++++||+++
T Consensus 85 ~~~~~vis~~a 95 (96)
T PF03807_consen 85 LKGKLVISIAA 95 (96)
T ss_dssp HTTSEEEEEST
T ss_pred cCCCEEEEeCC
Confidence 89999999875
No 88
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=99.26 E-value=4.3e-10 Score=84.88 Aligned_cols=127 Identities=13% Similarity=0.156 Sum_probs=93.3
Q ss_pred CCcEEEEcCCchhHHHHHHc-CCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEeccCCCchhH
Q psy755 13 GHDVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVP 91 (183)
Q Consensus 13 g~~V~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~~~~~ 91 (183)
.++|++|+|++++.+.+.+. |+...+++.++++++|+||+||+ |+.++.++ +++.+.+.++++|+++.+..+...
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaVk-P~~i~~vl---~~l~~~~~~~~~ivS~~agi~~~~ 84 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVK-PQDLEEVL---SELKSEKGKDKLLISIAAGVTLEK 84 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEeC-HHHHHHHH---HHHhhhccCCCEEEEecCCCCHHH
Confidence 35899999999998887664 77777888999999999999998 68899987 788877778899998887766653
Q ss_pred HHHHHHHHhcCCcEEeecccCCHHHHhcCceEEEec--CCHHHHHHHHHHHHHhcCCe
Q psy755 92 QTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVG--GDKSSLEKAKPILKCMGRNI 147 (183)
Q Consensus 92 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~l~~~~g~~~ 147 (183)
+.+.+.. +.+ +-..|...+.....|...+..+ .+++..+.++++|+.+|..+
T Consensus 85 --l~~~~~~-~~~-ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~ 138 (245)
T TIGR00112 85 --LSQLLGG-TRR-VVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVV 138 (245)
T ss_pred --HHHHcCC-CCe-EEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEE
Confidence 4444432 112 3334555666666665444433 25567789999999999754
No 89
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.18 E-value=1.6e-09 Score=84.52 Aligned_cols=139 Identities=19% Similarity=0.244 Sum_probs=93.0
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchh-HHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDA-SQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 79 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~i 79 (183)
||.++|++|.+.|++|++++++..+ .+.+.+.|.... ++.++++.||+|++++|+... ..++. +++.+.+++|++
T Consensus 28 mG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~~~-~~V~~--~~I~~~Lk~g~i 103 (330)
T PRK05479 28 QGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDEVQ-AEVYE--EEIEPNLKEGAA 103 (330)
T ss_pred HHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHHHH-HHHHH--HHHHhcCCCCCE
Confidence 7999999999999999998877553 344455576554 889999999999999998654 67753 568889999998
Q ss_pred EEeccCCCchhHHHHHHHHHhcCCcEEe-ecccCCHH-H----HhcCceEEE-ecCC--HHHHHHHHHHHHHhcCCe
Q psy755 80 VIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGTK-A----AQEATLTFM-VGGD--KSSLEKAKPILKCMGRNI 147 (183)
Q Consensus 80 iid~s~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~-~----~~~~~~~~~-~~g~--~~~~~~~~~l~~~~g~~~ 147 (183)
|+.+........ . .....+..++- +|-..+.. + ...|-..++ +..+ .++.+.+..++.++|...
T Consensus 104 L~~a~G~~i~~~---~-~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~~l~~aiG~~~ 176 (330)
T PRK05479 104 LAFAHGFNIHFG---Q-IVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLALAYAKGIGGTR 176 (330)
T ss_pred EEECCCCChhhc---e-eccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHHHHHHHcCCCc
Confidence 865555332221 1 11223333333 34333320 0 233443444 4444 788899999999999764
No 90
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.18 E-value=6.2e-10 Score=86.49 Aligned_cols=159 Identities=15% Similarity=0.198 Sum_probs=105.4
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCc-------------ccCCHHHHhccCCEEEEecCChHHHHHHhcCC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGAN-------------MALSLSTLASGAEFIISMLPASQDVLDAYDGS 67 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~-------------~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~ 67 (183)
||..+|..|+++|++|++|+| +++.+.+.+.|.. ..++..+..+.+|+||+|+|.. +++.++
T Consensus 11 iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~-~~~~~~--- 85 (305)
T PRK12921 11 VGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY-QLDAAI--- 85 (305)
T ss_pred HHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc-CHHHHH---
Confidence 689999999999999999999 7777777665421 1234555568899999999874 467776
Q ss_pred ccccccCCCCcEEEeccCCCchhHHHHHHHHHhc----CCcEEeecccC-CHH-HHhcCceEEEec----CCHHHHHHHH
Q psy755 68 DGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREK----QITFLDAPVSG-GTK-AAQEATLTFMVG----GDKSSLEKAK 137 (183)
Q Consensus 68 ~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~----g~~~~~~~~~~-~~~-~~~~~~~~~~~~----g~~~~~~~~~ 137 (183)
+.+.+.+.++++|+...+... ....+.+.+++. ++.++.++..+ +.. ....+. +..+ ...+..+.+.
T Consensus 86 ~~l~~~~~~~~~ii~~~nG~~-~~~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~--~~iG~~~~~~~~~~~~l~ 162 (305)
T PRK12921 86 PDLKPLVGEDTVIIPLQNGIG-QLEQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHR--LTFGEIPGQRSERTRAVR 162 (305)
T ss_pred HHHHhhcCCCCEEEEeeCCCC-hHHHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCc--EEEcCCCCCcCHHHHHHH
Confidence 788888888888887776543 223444444332 23334433332 111 111122 2232 2234556778
Q ss_pred HHHHHhcCCeEEeCCcchHHHHHHHHHHHH
Q psy755 138 PILKCMGRNIVHCGDSGNGQVAKLCNNMLL 167 (183)
Q Consensus 138 ~l~~~~g~~~~~~g~~g~a~~~k~~~~~~~ 167 (183)
++|...|..+....+.-...+.|++.|...
T Consensus 163 ~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~ 192 (305)
T PRK12921 163 DALAGARLEVVLSENIRQDIWRKLLFNAVM 192 (305)
T ss_pred HHHHhCCCCceecHHHHHHHHHHHHHHHhH
Confidence 888888887777778888999999988654
No 91
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.17 E-value=1.5e-09 Score=82.61 Aligned_cols=133 Identities=11% Similarity=0.081 Sum_probs=90.5
Q ss_pred CcHHHHHHHHhCCC----cEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCC
Q psy755 1 MGSHMARNLLKNGH----DVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 76 (183)
Q Consensus 1 mG~~iA~~l~~~g~----~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~ 76 (183)
||.+|++.|.+++. ++++++|++++. +.....++.+.++++|+||+|+|+ +.++.++ +++.+.+.+
T Consensus 14 mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~D~Vilavkp-~~~~~vl---~~i~~~l~~ 83 (260)
T PTZ00431 14 MGSALAYGIENSNIIGKENIYYHTPSKKNT------PFVYLQSNEELAKTCDIIVLAVKP-DLAGKVL---LEIKPYLGS 83 (260)
T ss_pred HHHHHHHHHHhCCCCCcceEEEECCChhcC------CeEEeCChHHHHHhCCEEEEEeCH-HHHHHHH---HHHHhhccC
Confidence 89999999998873 499999987652 334556788888899999999976 7788888 788888766
Q ss_pred CcEEEeccCCCchhHHHHHHHHHhcCCcEEeecccCCHHHHhcCceEEEec--CCHHHHHHHHHHHHHhcCCeE
Q psy755 77 GVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVG--GDKSSLEKAKPILKCMGRNIV 148 (183)
Q Consensus 77 ~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~l~~~~g~~~~ 148 (183)
+.+|.++++......+. .+... .. +-..+.+.+.....+...+... .+++..+.++++|+.+|...+
T Consensus 84 ~~iIS~~aGi~~~~l~~---~~~~~-~~-vvr~mPn~p~~~g~g~t~i~~~~~~~~~~~~~v~~l~~~~G~~~~ 152 (260)
T PTZ00431 84 KLLISICGGLNLKTLEE---MVGVE-AK-IVRVMPNTPSLVGQGSLVFCANNNVDSTDKKKVIDIFSACGIIQE 152 (260)
T ss_pred CEEEEEeCCccHHHHHH---HcCCC-Ce-EEEECCCchhHhcceeEEEEeCCCCCHHHHHHHHHHHHhCCcEEE
Confidence 55666666666544433 22211 11 2234445555555564333322 255678899999999998543
No 92
>KOG2304|consensus
Probab=99.13 E-value=3.9e-11 Score=87.18 Aligned_cols=144 Identities=21% Similarity=0.256 Sum_probs=103.9
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHc-----------------------------CCcccCCHHHHhccCCEEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKE-----------------------------GANMALSLSTLASGAEFII 51 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~-----------------------------g~~~~~~~~~~~~~adiVi 51 (183)
||..||+--+..|++|+++|++++.+.++.+. .+..+++..+++.++|+||
T Consensus 22 MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tnv~~~v~dadlii 101 (298)
T KOG2304|consen 22 MGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTNVSDAVSDADLII 101 (298)
T ss_pred cchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCCHHHhhhhhHHHH
Confidence 89999999999999999999999887665430 1455667788889999999
Q ss_pred EecCChHHHHHHhcCCccccccCCCCcEEEeccCCCchhHHHHH--HHHHhcCCcEEe-ecccCCHHHHhcCceEEEecC
Q psy755 52 SMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLS--NLAREKQITFLD-APVSGGTKAAQEATLTFMVGG 128 (183)
Q Consensus 52 ~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~~~~~~~~~--~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~g 128 (183)
.++-.+..++.-+| .++...-++.+++...+++...+..... +.-+-.|.||++ .|++.-.+-.+ ....
T Consensus 102 EAivEn~diK~~lF--~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMKLvEVir------~~~T 173 (298)
T KOG2304|consen 102 EAIVENLDIKRKLF--KDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMKLVEVIR------TDDT 173 (298)
T ss_pred HHHHHhHHHHHHHH--HHHHhhcccceEEeecccceeHHHHHhhccChhhhceeeccCCchhHHHhhhhc------CCCC
Confidence 99999888888776 6666666666776644444333322222 111123899998 57777554221 1235
Q ss_pred CHHHHHHHHHHHHHhcCCeEEeCC
Q psy755 129 DKSSLEKAKPILKCMGRNIVHCGD 152 (183)
Q Consensus 129 ~~~~~~~~~~l~~~~g~~~~~~g~ 152 (183)
+++.+..+..+-+.+|+.++.+-+
T Consensus 174 S~eTf~~l~~f~k~~gKttVackD 197 (298)
T KOG2304|consen 174 SDETFNALVDFGKAVGKTTVACKD 197 (298)
T ss_pred CHHHHHHHHHHHHHhCCCceeecC
Confidence 889999999999999999988766
No 93
>PLN03139 formate dehydrogenase; Provisional
Probab=99.12 E-value=1.9e-09 Score=85.86 Aligned_cols=101 Identities=12% Similarity=0.239 Sum_probs=86.9
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
||+.+|+.|...|++|.+||++....+.....|+...+++++++.+||+|++++|...+++.++. +++...+++|.++
T Consensus 210 IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~--~~~l~~mk~ga~l 287 (386)
T PLN03139 210 IGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFN--KERIAKMKKGVLI 287 (386)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhC--HHHHhhCCCCeEE
Confidence 68999999999999999999986544444455666667999999999999999999999999873 6788899999999
Q ss_pred EeccCCCchhHHHHHHHHHhcCC
Q psy755 81 IDSSTVDPQVPQTLSNLAREKQI 103 (183)
Q Consensus 81 id~s~~~~~~~~~~~~~~~~~g~ 103 (183)
||++.....+..++.+.++...+
T Consensus 288 IN~aRG~iVDe~AL~~AL~sG~l 310 (386)
T PLN03139 288 VNNARGAIMDTQAVADACSSGHI 310 (386)
T ss_pred EECCCCchhhHHHHHHHHHcCCc
Confidence 99999999999999998886543
No 94
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.11 E-value=1.3e-09 Score=84.62 Aligned_cols=161 Identities=17% Similarity=0.205 Sum_probs=104.6
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcc-----------cCCHHHHhccCCEEEEecCChHHHHHHhcCCcc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANM-----------ALSLSTLASGAEFIISMLPASQDVLDAYDGSDG 69 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~-----------~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~ 69 (183)
||+.+|..|.+.|++|++++|++++.+.+.+.|... .++..+. ..+|+||+++|.. +++.++ +.
T Consensus 11 ~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~-~~~~~~---~~ 85 (304)
T PRK06522 11 IGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAY-QLPAAL---PS 85 (304)
T ss_pred HHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccc-cHHHHH---HH
Confidence 689999999999999999999988888877766422 3445554 8899999999874 567777 88
Q ss_pred ccccCCCCcEEEeccCCCchhHHHHHHHHHhcC----CcEEeecccC--CHHHHhcCceEEEec-CCHHHHHHHHHHHHH
Q psy755 70 ILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQ----ITFLDAPVSG--GTKAAQEATLTFMVG-GDKSSLEKAKPILKC 142 (183)
Q Consensus 70 l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~g----~~~~~~~~~~--~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~ 142 (183)
+.+.+.++++|+.+.+.... ...+.+.+.... ..+..+...+ .......+...+... ++.+..+.+.++|..
T Consensus 86 l~~~l~~~~~iv~~~nG~~~-~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ig~~~~~~~~~~~l~~~l~~ 164 (304)
T PRK06522 86 LAPLLGPDTPVLFLQNGVGH-LEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLKIGEPDGESAAAEALADLLNA 164 (304)
T ss_pred HhhhcCCCCEEEEecCCCCc-HHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEEEeCCCCCcHHHHHHHHHHHh
Confidence 88888888888887776432 223444333221 1111111111 111112233222211 222335678888888
Q ss_pred hcCCeEEeCCcchHHHHHHHHHHHH
Q psy755 143 MGRNIVHCGDSGNGQVAKLCNNMLL 167 (183)
Q Consensus 143 ~g~~~~~~g~~g~a~~~k~~~~~~~ 167 (183)
.|.++....+.-...+.|++.|...
T Consensus 165 ~~~~~~~~~di~~~~w~Kl~~N~~~ 189 (304)
T PRK06522 165 AGLDVEWSPDIRTEIWRKLWVNCVI 189 (304)
T ss_pred cCCCCCCChHHHHHHHHHHHHHhch
Confidence 8887766677888999999888644
No 95
>PRK07574 formate dehydrogenase; Provisional
Probab=99.11 E-value=8.8e-10 Score=87.82 Aligned_cols=101 Identities=12% Similarity=0.172 Sum_probs=86.6
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
||+.+|++|...|++|.+|||+....+.....++....+++++++.||+|++++|...+++.++ .++..+.+++|.++
T Consensus 203 IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li--~~~~l~~mk~ga~l 280 (385)
T PRK07574 203 IGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLF--DADVLSRMKRGSYL 280 (385)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHh--CHHHHhcCCCCcEE
Confidence 6899999999999999999998754443444566666789999999999999999999999987 37788889999999
Q ss_pred EeccCCCchhHHHHHHHHHhcCC
Q psy755 81 IDSSTVDPQVPQTLSNLAREKQI 103 (183)
Q Consensus 81 id~s~~~~~~~~~~~~~~~~~g~ 103 (183)
||++.....+..++.+.+....+
T Consensus 281 IN~aRG~iVDe~AL~~AL~sG~i 303 (385)
T PRK07574 281 VNTARGKIVDRDAVVRALESGHL 303 (385)
T ss_pred EECCCCchhhHHHHHHHHHhCCc
Confidence 99999999999999998887543
No 96
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=99.10 E-value=7.9e-09 Score=76.60 Aligned_cols=172 Identities=20% Similarity=0.317 Sum_probs=119.2
Q ss_pred cHHHHHHHHhCCCcEEEEcCCch-----hHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCC
Q psy755 2 GSHMARNLLKNGHDVIVYDKNTD-----ASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 76 (183)
Q Consensus 2 G~~iA~~l~~~g~~V~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~ 76 (183)
|..||..++++||+|++.+.|.+ ..++....|+...++..+.++.+++.++=+|-+..+-.+. +++.+++++
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia---rei~~hvpE 109 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIA---REILEHVPE 109 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHH---HHHHhhCcC
Confidence 67899999999999999976654 3566667799999888899999999999999997777776 899999999
Q ss_pred CcEEEeccCCCchhHHH-HHHHHHhc----CCc-EEeecccCCHHHHhcCceEEEec--------CCHHHHHHHHHHHHH
Q psy755 77 GVIVIDSSTVDPQVPQT-LSNLAREK----QIT-FLDAPVSGGTKAAQEATLTFMVG--------GDKSSLEKAKPILKC 142 (183)
Q Consensus 77 ~~iiid~s~~~~~~~~~-~~~~~~~~----g~~-~~~~~~~~~~~~~~~~~~~~~~~--------g~~~~~~~~~~l~~~ 142 (183)
|.+|.++++++|...-. +...++.+ |+. +..+.+.|+|.. +. .++.+ ..++..++..++.++
T Consensus 110 gAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h---~~-yviagr~t~g~elATeEQi~r~velaes 185 (340)
T COG4007 110 GAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQH---GH-YVIAGRSTEGKELATEEQIERCVELAES 185 (340)
T ss_pred CcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCCC---ce-EEEeccCCCceeeccHHHHHHHHHHHHh
Confidence 99999999998876433 33333322 443 333456665542 22 23221 356788899999999
Q ss_pred hcCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy755 143 MGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLG 181 (183)
Q Consensus 143 ~g~~~~~~g~~g~a~~~k~~~~~~~~~~~~~~~E~~~~~ 181 (183)
.|+.++.+...- -..+.=+...+....++++.+-+.++
T Consensus 186 ~Gk~~yv~padv-~s~VaDmg~lvtav~l~gvldyy~Vg 223 (340)
T COG4007 186 TGKEVYVLPADV-VSAVADMGVLVTAVALSGVLDYYYVG 223 (340)
T ss_pred cCCceEecCHHH-HHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999887765321 11222223344555555555554443
No 97
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=99.06 E-value=4.7e-10 Score=78.69 Aligned_cols=101 Identities=22% Similarity=0.243 Sum_probs=76.6
Q ss_pred CcHHHHHHHHhCC-CcEEEEcCCchhHHHHHHc-CC----cccCCHHHHhccCCEEEEecCChHH-HHHHhcCCcccccc
Q psy755 1 MGSHMARNLLKNG-HDVIVYDKNTDASQTLAKE-GA----NMALSLSTLASGAEFIISMLPASQD-VLDAYDGSDGILKH 73 (183)
Q Consensus 1 mG~~iA~~l~~~g-~~V~~~~~~~~~~~~~~~~-g~----~~~~~~~~~~~~adiVi~~vp~~~~-~~~v~~~~~~l~~~ 73 (183)
||.++++.|.+.| ++|++|||++++.+.+.+. +. ....+..+.++++|+||+++|.+.. .+.+.+ ....
T Consensus 30 ~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~~~~~~~----~~~~ 105 (155)
T cd01065 30 AARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKPGDELPL----PPSL 105 (155)
T ss_pred HHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCCCCCCCC----CHHH
Confidence 6889999999986 7899999999988776554 32 2345677778999999999998764 233321 1234
Q ss_pred CCCCcEEEeccCCCchhHHHHHHHHHhcCCcEEe
Q psy755 74 AKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 107 (183)
Q Consensus 74 l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~ 107 (183)
++++++++|+++..+.+ .+.+.+++.|.++++
T Consensus 106 ~~~~~~v~D~~~~~~~~--~l~~~~~~~g~~~v~ 137 (155)
T cd01065 106 LKPGGVVYDVVYNPLET--PLLKEARALGAKTID 137 (155)
T ss_pred cCCCCEEEEcCcCCCCC--HHHHHHHHCCCceeC
Confidence 68999999999886555 778888888998888
No 98
>PRK06444 prephenate dehydrogenase; Provisional
Probab=99.00 E-value=1.2e-08 Score=74.21 Aligned_cols=122 Identities=12% Similarity=0.155 Sum_probs=87.5
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
||+.++..|.+.||+|+ +.+||+||+|+|... +..++ +++. .+|
T Consensus 12 mG~~~~~~~~~~g~~v~--------------------------~~~~DlVilavPv~~-~~~~i---~~~~------~~v 55 (197)
T PRK06444 12 LGRVLCSILDDNGLGVY--------------------------IKKADHAFLSVPIDA-ALNYI---ESYD------NNF 55 (197)
T ss_pred HHHHHHHHHHhCCCEEE--------------------------ECCCCEEEEeCCHHH-HHHHH---HHhC------CeE
Confidence 79999999999999986 368999999999854 45554 4443 378
Q ss_pred EeccCCCchhHHHHHHHHHhcCCcEEe-ecccCCHHHHhcC--ceEEEec--CCHHHHHHHHHHHHHhcCCeEEeCCcch
Q psy755 81 IDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGTKAAQEA--TLTFMVG--GDKSSLEKAKPILKCMGRNIVHCGDSGN 155 (183)
Q Consensus 81 id~s~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~--~~~~~~~--g~~~~~~~~~~l~~~~g~~~~~~g~~g~ 155 (183)
+|.++++..... ....|+. |||+| |..+..+ ..++++. .+++..+.++++++ |.+++.+.+...
T Consensus 56 ~Dv~SvK~~i~~--------~~~~~vg~HPMfG-p~~a~~~lf~~~iv~~~~~~~~~~~~~~~l~~--G~~~~~~t~eeH 124 (197)
T PRK06444 56 VEISSVKWPFKK--------YSGKIVSIHPLFG-PMSYNDGVHRTVIFINDISRDNYLNEINEMFR--GYHFVEMTADEH 124 (197)
T ss_pred EeccccCHHHHH--------hcCCEEecCCCCC-CCcCcccccceEEEECCCCCHHHHHHHHHHHc--CCEEEEeCHHHH
Confidence 999999885322 1446888 89998 3332221 2344442 35566778999998 889999999888
Q ss_pred HHHHHHHHHHHHHH
Q psy755 156 GQVAKLCNNMLLGV 169 (183)
Q Consensus 156 a~~~k~~~~~~~~~ 169 (183)
-..+..++.+-...
T Consensus 125 D~~~A~ishLpH~i 138 (197)
T PRK06444 125 DLLMSEIMVKPYII 138 (197)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887765543
No 99
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=99.00 E-value=3.8e-09 Score=82.89 Aligned_cols=96 Identities=17% Similarity=0.286 Sum_probs=81.3
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
||+++|+.|...|++|++||++++..... .....++.+++++||+|++++|...+.+.++. +++.+.+++|.++
T Consensus 157 IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----~~~~~~l~ell~~aDiVil~lP~t~~t~~li~--~~~l~~mk~gavl 230 (330)
T PRK12480 157 IGAATAKIYAGFGATITAYDAYPNKDLDF----LTYKDSVKEAIKDADIISLHVPANKESYHLFD--KAMFDHVKKGAIL 230 (330)
T ss_pred HHHHHHHHHHhCCCEEEEEeCChhHhhhh----hhccCCHHHHHhcCCEEEEeCCCcHHHHHHHh--HHHHhcCCCCcEE
Confidence 68999999999999999999998653321 23456899999999999999999888878763 6778889999999
Q ss_pred EeccCCCchhHHHHHHHHHhcC
Q psy755 81 IDSSTVDPQVPQTLSNLAREKQ 102 (183)
Q Consensus 81 id~s~~~~~~~~~~~~~~~~~g 102 (183)
|+++.+.-.+..++.+.+....
T Consensus 231 IN~aRG~~vd~~aL~~aL~~g~ 252 (330)
T PRK12480 231 VNAARGAVINTPDLIAAVNDGT 252 (330)
T ss_pred EEcCCccccCHHHHHHHHHcCC
Confidence 9999999999999998887653
No 100
>PRK13243 glyoxylate reductase; Reviewed
Probab=99.00 E-value=2.9e-09 Score=83.76 Aligned_cols=97 Identities=19% Similarity=0.313 Sum_probs=82.1
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
||+.+|+.|...|++|.+|||++... .....+.. ..++.+++++||+|++++|....++.++. ++..+.+++|.++
T Consensus 161 IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~~~~-~~~l~ell~~aDiV~l~lP~t~~T~~~i~--~~~~~~mk~ga~l 236 (333)
T PRK13243 161 IGQAVARRAKGFGMRILYYSRTRKPE-AEKELGAE-YRPLEELLRESDFVSLHVPLTKETYHMIN--EERLKLMKPTAIL 236 (333)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCChh-hHHHcCCE-ecCHHHHHhhCCEEEEeCCCChHHhhccC--HHHHhcCCCCeEE
Confidence 68999999999999999999987643 22333444 35899999999999999999998888873 6778889999999
Q ss_pred EeccCCCchhHHHHHHHHHhc
Q psy755 81 IDSSTVDPQVPQTLSNLAREK 101 (183)
Q Consensus 81 id~s~~~~~~~~~~~~~~~~~ 101 (183)
||++.....+..++.+.+...
T Consensus 237 IN~aRg~~vd~~aL~~aL~~g 257 (333)
T PRK13243 237 VNTARGKVVDTKALVKALKEG 257 (333)
T ss_pred EECcCchhcCHHHHHHHHHcC
Confidence 999999999999999988765
No 101
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=98.97 E-value=1.1e-09 Score=78.81 Aligned_cols=99 Identities=21% Similarity=0.320 Sum_probs=80.6
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
+|+.+|+.+...|.+|++|||+..........+. ...+++++++.||+|++++|.....+.++ .++....+++|.++
T Consensus 47 IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~-~~~~l~ell~~aDiv~~~~plt~~T~~li--~~~~l~~mk~ga~l 123 (178)
T PF02826_consen 47 IGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV-EYVSLDELLAQADIVSLHLPLTPETRGLI--NAEFLAKMKPGAVL 123 (178)
T ss_dssp HHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE-EESSHHHHHHH-SEEEE-SSSSTTTTTSB--SHHHHHTSTTTEEE
T ss_pred CcCeEeeeeecCCceeEEecccCChhhhcccccc-eeeehhhhcchhhhhhhhhccccccceee--eeeeeeccccceEE
Confidence 5899999999999999999999987664555555 45599999999999999999888777776 36777889999999
Q ss_pred EeccCCCchhHHHHHHHHHhcC
Q psy755 81 IDSSTVDPQVPQTLSNLAREKQ 102 (183)
Q Consensus 81 id~s~~~~~~~~~~~~~~~~~g 102 (183)
||++.....+..++.+.+++.-
T Consensus 124 vN~aRG~~vde~aL~~aL~~g~ 145 (178)
T PF02826_consen 124 VNVARGELVDEDALLDALESGK 145 (178)
T ss_dssp EESSSGGGB-HHHHHHHHHTTS
T ss_pred EeccchhhhhhhHHHHHHhhcc
Confidence 9999999999999998887653
No 102
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.95 E-value=2.6e-08 Score=77.65 Aligned_cols=137 Identities=18% Similarity=0.162 Sum_probs=90.5
Q ss_pred CcHHHHHHHHhCCCcEEEEc-CCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcE
Q psy755 1 MGSHMARNLLKNGHDVIVYD-KNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 79 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~i 79 (183)
||.++|++|.+.|++|++++ +++++.+.+.+.|+... ++.+++++||+|++++|+..+...++ +++.+.++++.
T Consensus 14 mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~~ADiVvLaVpp~~~~~~v~---~ei~~~l~~g~- 88 (314)
T TIGR00465 14 QGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEAIPQADLIMNLLPDEVQHEVYE---AEIQPLLKEGK- 88 (314)
T ss_pred HHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHHHhcCCEEEEeCCcHhHHHHHH---HHHHhhCCCCc-
Confidence 79999999999999987765 44456666666677654 68888999999999999864565554 67888888786
Q ss_pred EEeccCCCchhHHHHHHHHHhcCCcEEeecccCCHHHH-------hcCceEEE-ec--CCHHHHHHHHHHHHHhcCC
Q psy755 80 VIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAA-------QEATLTFM-VG--GDKSSLEKAKPILKCMGRN 146 (183)
Q Consensus 80 iid~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------~~~~~~~~-~~--g~~~~~~~~~~l~~~~g~~ 146 (183)
++..+...+.. .+...++ .+...+ ..+..+|... ..|-..++ .. -+.+..+.+..+++++|..
T Consensus 89 iVs~aaG~~i~--~~~~~~~-~~~~Vv-rvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~~~~~iG~~ 161 (314)
T TIGR00465 89 TLGFSHGFNIH--FVQIVPP-KDVDVV-MVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAIALAYAKAIGGG 161 (314)
T ss_pred EEEEeCCccHh--hccccCC-CCCcEE-EECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHHHHHHHHHcCCC
Confidence 45555443332 2233332 233333 2334444442 44543443 32 3667788999999999986
No 103
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.95 E-value=4.5e-09 Score=81.46 Aligned_cols=95 Identities=15% Similarity=0.300 Sum_probs=80.2
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCc-ccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGAN-MALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 79 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~i 79 (183)
||+.+|+.+...|++|++|||+... .+.. ...++++++++||+|++++|...+++.++. ++....+++|.+
T Consensus 133 IG~~vA~~l~afG~~V~~~~r~~~~------~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~--~~~l~~mk~ga~ 204 (303)
T PRK06436 133 IGRRVALLAKAFGMNIYAYTRSYVN------DGISSIYMEPEDIMKKSDFVLISLPLTDETRGMIN--SKMLSLFRKGLA 204 (303)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCcc------cCcccccCCHHHHHhhCCEEEECCCCCchhhcCcC--HHHHhcCCCCeE
Confidence 6899999998889999999998532 2322 246899999999999999999999888873 667788999999
Q ss_pred EEeccCCCchhHHHHHHHHHhcCC
Q psy755 80 VIDSSTVDPQVPQTLSNLAREKQI 103 (183)
Q Consensus 80 iid~s~~~~~~~~~~~~~~~~~g~ 103 (183)
+||++.....+..++.+.+.+..+
T Consensus 205 lIN~sRG~~vd~~aL~~aL~~g~i 228 (303)
T PRK06436 205 IINVARADVVDKNDMLNFLRNHND 228 (303)
T ss_pred EEECCCccccCHHHHHHHHHcCCc
Confidence 999999999999999998887533
No 104
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.87 E-value=9.7e-09 Score=80.02 Aligned_cols=99 Identities=15% Similarity=0.252 Sum_probs=81.2
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
||+.+|+.|...|++|.+||+++........ .....++++++++||+|++++|...+++.++. .+....+++|.++
T Consensus 147 IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~--~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~--~~~l~~mk~ga~l 222 (312)
T PRK15469 147 LGSKVAQSLQTWGFPLRCWSRSRKSWPGVQS--FAGREELSAFLSQTRVLINLLPNTPETVGIIN--QQLLEQLPDGAYL 222 (312)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCCCCCcee--ecccccHHHHHhcCCEEEECCCCCHHHHHHhH--HHHHhcCCCCcEE
Confidence 6899999999999999999987754321111 11235789999999999999999999999884 6678889999999
Q ss_pred EeccCCCchhHHHHHHHHHhcCC
Q psy755 81 IDSSTVDPQVPQTLSNLAREKQI 103 (183)
Q Consensus 81 id~s~~~~~~~~~~~~~~~~~g~ 103 (183)
||++.....+..++.+.+.+..+
T Consensus 223 IN~aRG~vVde~aL~~aL~~g~i 245 (312)
T PRK15469 223 LNLARGVHVVEDDLLAALDSGKV 245 (312)
T ss_pred EECCCccccCHHHHHHHHhcCCe
Confidence 99999999999999988887543
No 105
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=98.86 E-value=1.4e-08 Score=84.42 Aligned_cols=100 Identities=21% Similarity=0.291 Sum_probs=83.7
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
||+.+|+.|...|++|++||++.. .+.....+....+++++++++||+|++++|...+++.++. .+..+.+++|.++
T Consensus 149 IG~~vA~~l~~fG~~V~~~d~~~~-~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~--~~~l~~mk~ga~l 225 (525)
T TIGR01327 149 IGSIVAKRAKAFGMKVLAYDPYIS-PERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIG--AEELAKMKKGVII 225 (525)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCC-hhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcC--HHHHhcCCCCeEE
Confidence 689999999999999999998643 2333445666567899999999999999999988888872 5667789999999
Q ss_pred EeccCCCchhHHHHHHHHHhcCC
Q psy755 81 IDSSTVDPQVPQTLSNLAREKQI 103 (183)
Q Consensus 81 id~s~~~~~~~~~~~~~~~~~g~ 103 (183)
||++.....+..++.+.+....+
T Consensus 226 IN~aRG~~vde~aL~~aL~~g~i 248 (525)
T TIGR01327 226 VNCARGGIIDEAALYEALEEGHV 248 (525)
T ss_pred EEcCCCceeCHHHHHHHHHcCCe
Confidence 99999999999999998887644
No 106
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.85 E-value=1.4e-08 Score=79.93 Aligned_cols=98 Identities=18% Similarity=0.288 Sum_probs=78.6
Q ss_pred CcHHHHHHH-HhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcE
Q psy755 1 MGSHMARNL-LKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 79 (183)
Q Consensus 1 mG~~iA~~l-~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~i 79 (183)
||+++|+.| ...|++|++||+++.... ...+...+++++++++||+|++++|.....+.++ + +++.+.+++|.+
T Consensus 157 IG~~vA~~L~~~~g~~V~~~d~~~~~~~---~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li-~-~~~l~~mk~gai 231 (332)
T PRK08605 157 IGLAVAKIFAKGYGSDVVAYDPFPNAKA---ATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLF-N-ADLFKHFKKGAV 231 (332)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccHhH---HhhccccCCHHHHHHhCCEEEEeCCCCcchhhhc-C-HHHHhcCCCCcE
Confidence 689999999 456889999999876431 1234455689999999999999999988777654 2 556788999999
Q ss_pred EEeccCCCchhHHHHHHHHHhcCC
Q psy755 80 VIDSSTVDPQVPQTLSNLAREKQI 103 (183)
Q Consensus 80 iid~s~~~~~~~~~~~~~~~~~g~ 103 (183)
+||+|.+...+..++.+.+....+
T Consensus 232 lIN~sRG~~vd~~aL~~aL~~g~i 255 (332)
T PRK08605 232 FVNCARGSLVDTKALLDALDNGLI 255 (332)
T ss_pred EEECCCCcccCHHHHHHHHHhCCe
Confidence 999999999999999988876533
No 107
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=98.80 E-value=1.2e-07 Score=73.20 Aligned_cols=159 Identities=20% Similarity=0.169 Sum_probs=101.0
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcc--------------cCCHHHHhccCCEEEEecCChHHHHHHhcC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANM--------------ALSLSTLASGAEFIISMLPASQDVLDAYDG 66 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~--------------~~~~~~~~~~adiVi~~vp~~~~~~~v~~~ 66 (183)
||..+|..|.+.|++|++++|+ ++.+.+.+.|... .+++++ ....|+||++++.. +++.++
T Consensus 2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~-~~~~~l-- 76 (293)
T TIGR00745 2 VGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAY-QTEEAA-- 76 (293)
T ss_pred chHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccch-hHHHHH--
Confidence 7999999999999999999997 6667776654211 112333 56899999999885 567776
Q ss_pred CccccccCCCCcEEEeccCCCchhHHHHHHHHHhc----CCcEEeecccC-C-HHHHhcCceEEEec-CCHHHHHHHHHH
Q psy755 67 SDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREK----QITFLDAPVSG-G-TKAAQEATLTFMVG-GDKSSLEKAKPI 139 (183)
Q Consensus 67 ~~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~----g~~~~~~~~~~-~-~~~~~~~~~~~~~~-g~~~~~~~~~~l 139 (183)
+.+.+.+.++++|+...+..... +.+.+.+.+. |..++.+...+ + ......+...+-.. ++.+..+.+.++
T Consensus 77 -~~l~~~l~~~~~iv~~qNG~g~~-~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~~~~~~l~~~ 154 (293)
T TIGR00745 77 -ALLLPLIGKNTKVLFLQNGLGHE-ERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGENEAVEALAEL 154 (293)
T ss_pred -HHhHhhcCCCCEEEEccCCCCCH-HHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCchHHHHHHHHH
Confidence 88899998889888877765433 3344444322 11112111111 1 01111233222111 122445677788
Q ss_pred HHHhcCCeEEeCCcchHHHHHHHHHHH
Q psy755 140 LKCMGRNIVHCGDSGNGQVAKLCNNML 166 (183)
Q Consensus 140 ~~~~g~~~~~~g~~g~a~~~k~~~~~~ 166 (183)
|+..|.++....+.-...+.|++.|..
T Consensus 155 l~~~~~~~~~~~di~~~~w~Kl~~N~~ 181 (293)
T TIGR00745 155 LNEAGIPAELHGDILAAIWKKLLVNAA 181 (293)
T ss_pred HHhCCCCCEecchHHHHHHHHHhheec
Confidence 888888877778888899999988863
No 108
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=98.80 E-value=3e-08 Score=77.48 Aligned_cols=98 Identities=21% Similarity=0.325 Sum_probs=83.6
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
||+++|+++...|.+|..|||++. -+.....+..+.+ +++++++||+|++.+|...+..+++. .+....+++|.++
T Consensus 157 IG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~-l~ell~~sDii~l~~Plt~~T~hLin--~~~l~~mk~ga~l 232 (324)
T COG1052 157 IGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYVD-LDELLAESDIISLHCPLTPETRHLIN--AEELAKMKPGAIL 232 (324)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceecc-HHHHHHhCCEEEEeCCCChHHhhhcC--HHHHHhCCCCeEE
Confidence 589999999988899999999986 3333333456665 99999999999999999999999884 7778889999999
Q ss_pred EeccCCCchhHHHHHHHHHhcC
Q psy755 81 IDSSTVDPQVPQTLSNLAREKQ 102 (183)
Q Consensus 81 id~s~~~~~~~~~~~~~~~~~g 102 (183)
|+++...-.+..++.+.+++..
T Consensus 233 VNtaRG~~VDe~ALi~AL~~g~ 254 (324)
T COG1052 233 VNTARGGLVDEQALIDALKSGK 254 (324)
T ss_pred EECCCccccCHHHHHHHHHhCC
Confidence 9999999999999999988753
No 109
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.80 E-value=2.1e-08 Score=77.49 Aligned_cols=78 Identities=21% Similarity=0.328 Sum_probs=64.2
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
||.++|++|...|++|++|++...+.+.+.+.|.... ++.++++.||+|++++|++++ +.++. +++.+.+++|.++
T Consensus 27 IG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~-sl~Eaak~ADVV~llLPd~~t-~~V~~--~eil~~MK~GaiL 102 (335)
T PRK13403 27 QGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVM-SVSEAVRTAQVVQMLLPDEQQ-AHVYK--AEVEENLREGQML 102 (335)
T ss_pred HHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEEC-CHHHHHhcCCEEEEeCCChHH-HHHHH--HHHHhcCCCCCEE
Confidence 7999999999999999999877655555666676554 899999999999999998654 67763 5788999999987
Q ss_pred Ee
Q psy755 81 ID 82 (183)
Q Consensus 81 id 82 (183)
+-
T Consensus 103 ~f 104 (335)
T PRK13403 103 LF 104 (335)
T ss_pred EE
Confidence 63
No 110
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.80 E-value=2.9e-08 Score=82.64 Aligned_cols=98 Identities=24% Similarity=0.339 Sum_probs=82.8
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
||+.+|+.|...|++|++||++... +.....+.... ++.++++.||+|++++|...+++.++. .+..+.+++|.++
T Consensus 151 IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~-~l~ell~~aDiV~l~lP~t~~t~~li~--~~~l~~mk~ga~l 226 (526)
T PRK13581 151 IGSEVAKRAKAFGMKVIAYDPYISP-ERAAQLGVELV-SLDELLARADFITLHTPLTPETRGLIG--AEELAKMKPGVRI 226 (526)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEE-cHHHHHhhCCEEEEccCCChHhhcCcC--HHHHhcCCCCeEE
Confidence 6899999999999999999987542 33344566655 899999999999999999998888873 6678889999999
Q ss_pred EeccCCCchhHHHHHHHHHhcC
Q psy755 81 IDSSTVDPQVPQTLSNLAREKQ 102 (183)
Q Consensus 81 id~s~~~~~~~~~~~~~~~~~g 102 (183)
||++.....+..++.+.+....
T Consensus 227 IN~aRG~~vde~aL~~aL~~g~ 248 (526)
T PRK13581 227 INCARGGIIDEAALAEALKSGK 248 (526)
T ss_pred EECCCCceeCHHHHHHHHhcCC
Confidence 9999999999999998887653
No 111
>KOG2305|consensus
Probab=98.78 E-value=3.2e-08 Score=72.30 Aligned_cols=164 Identities=18% Similarity=0.182 Sum_probs=107.3
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHH-----------cC--------------CcccCCHHHHhccCCEEEEecC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAK-----------EG--------------ANMALSLSTLASGAEFIISMLP 55 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g--------------~~~~~~~~~~~~~adiVi~~vp 55 (183)
.|++.|..|+..||+|..||..+..+..+.+ .| +..++++.|+++++=.|-.|+|
T Consensus 14 ~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~vk~Ai~iQEcvp 93 (313)
T KOG2305|consen 14 VGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELVKGAIHIQECVP 93 (313)
T ss_pred ccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHHhhhhhHHhhch
Confidence 4789999999999999999999876543322 11 4567789999999999999999
Q ss_pred ChHHHHHHhcCCccccccCCCCcEEEeccCCCchhHHHHHHHHHhcCCcEEeecccCCHHHHhcCceEEEecCCHHHHHH
Q psy755 56 ASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEK 135 (183)
Q Consensus 56 ~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 135 (183)
....++.-++ ..+.+.+.+.+++-..++..+. + ...+-+..+.--.+.||+....- ...-+.+-..-.+++.+++
T Consensus 94 E~L~lkk~ly--~qlD~i~d~~tIlaSSTSt~mp-S-~~s~gL~~k~q~lvaHPvNPPyf-iPLvElVPaPwTsp~tVdr 168 (313)
T KOG2305|consen 94 EDLNLKKQLY--KQLDEIADPTTILASSTSTFMP-S-KFSAGLINKEQCLVAHPVNPPYF-IPLVELVPAPWTSPDTVDR 168 (313)
T ss_pred HhhHHHHHHH--HHHHHhcCCceEEeccccccCh-H-HHhhhhhhhhheeEecCCCCCcc-cchheeccCCCCChhHHHH
Confidence 9998888776 6666666555554433333222 2 22223333333345556554210 0000111111257788999
Q ss_pred HHHHHHHhcCCeEEeCCcchHHHHHHHHHHHHHH
Q psy755 136 AKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGV 169 (183)
Q Consensus 136 ~~~l~~~~g~~~~~~g~~g~a~~~k~~~~~~~~~ 169 (183)
.+++.+++|.+++....+..|..+..++..+..-
T Consensus 169 t~~lM~sigq~pV~l~rei~Gf~lnriq~Ailne 202 (313)
T KOG2305|consen 169 TRALMRSIGQEPVTLKREILGFALNRIQYAILNE 202 (313)
T ss_pred HHHHHHHhCCCCcccccccccceeccccHHHHHH
Confidence 9999999999998887666677777666655443
No 112
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=98.73 E-value=4.3e-08 Score=76.61 Aligned_cols=98 Identities=22% Similarity=0.272 Sum_probs=82.3
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
+|+.+|.++...|++|.+||+...+- .....+....++++++++.||+|++.+|....++.++. .+....+++|.++
T Consensus 153 IG~~va~~l~afgm~v~~~d~~~~~~-~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~--~~~~a~MK~gail 229 (324)
T COG0111 153 IGRAVAKRLKAFGMKVIGYDPYSPRE-RAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLIN--AEELAKMKPGAIL 229 (324)
T ss_pred HHHHHHHHHHhCCCeEEEECCCCchh-hhccccceecccHHHHHhhCCEEEEcCCCCcchhcccC--HHHHhhCCCCeEE
Confidence 58999999999999999999944331 22233556677999999999999999999999999883 6667789999999
Q ss_pred EeccCCCchhHHHHHHHHHhc
Q psy755 81 IDSSTVDPQVPQTLSNLAREK 101 (183)
Q Consensus 81 id~s~~~~~~~~~~~~~~~~~ 101 (183)
||++.....+..++.+.++.-
T Consensus 230 IN~aRG~vVde~aL~~AL~~G 250 (324)
T COG0111 230 INAARGGVVDEDALLAALDSG 250 (324)
T ss_pred EECCCcceecHHHHHHHHHcC
Confidence 999999999999999988764
No 113
>PLN02928 oxidoreductase family protein
Probab=98.71 E-value=5.6e-08 Score=76.89 Aligned_cols=98 Identities=11% Similarity=0.150 Sum_probs=79.4
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHH------------HHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTL------------AKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSD 68 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~------------~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~ 68 (183)
||+.+|+.|...|++|++|||+....... ..... ...++.+++++||+|++++|.....+.++. +
T Consensus 170 IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~aDiVvl~lPlt~~T~~li~--~ 246 (347)
T PLN02928 170 IGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGEADIVVLCCTLTKETAGIVN--D 246 (347)
T ss_pred HHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccC-cccCHHHHHhhCCEEEECCCCChHhhcccC--H
Confidence 68999999999999999999985432111 00112 345899999999999999999988888873 6
Q ss_pred cccccCCCCcEEEeccCCCchhHHHHHHHHHhc
Q psy755 69 GILKHAKPGVIVIDSSTVDPQVPQTLSNLAREK 101 (183)
Q Consensus 69 ~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~ 101 (183)
+....+++|.++||++.+.-.+..++.+.+...
T Consensus 247 ~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g 279 (347)
T PLN02928 247 EFLSSMKKGALLVNIARGGLLDYDAVLAALESG 279 (347)
T ss_pred HHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 778889999999999999999988999888764
No 114
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=98.70 E-value=2.3e-07 Score=72.55 Aligned_cols=160 Identities=14% Similarity=0.149 Sum_probs=101.7
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcc-------------cCCHHHHhccCCEEEEecCChHHHHHHhcCC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANM-------------ALSLSTLASGAEFIISMLPASQDVLDAYDGS 67 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~-------------~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~ 67 (183)
||+.+|..|+++|++|.++.|++. +.....|... ..+..+....+|+||+|||..+ +..++
T Consensus 16 iG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~~-~~~~~--- 89 (313)
T PRK06249 16 IGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKTTA-NALLA--- 89 (313)
T ss_pred HHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecCCC-hHhHH---
Confidence 689999999999999999999863 3444433211 0112234568999999998854 55665
Q ss_pred ccccccCCCCcEEEeccCCCchhHHHHHHHHHhc----CCcEEeecccCC--HHHHhcCceEEEe-cCC------HHHHH
Q psy755 68 DGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREK----QITFLDAPVSGG--TKAAQEATLTFMV-GGD------KSSLE 134 (183)
Q Consensus 68 ~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~--~~~~~~~~~~~~~-~g~------~~~~~ 134 (183)
+.+.+.+.++..|+...+..... ..+.+.+++. ++.++.+...+. ......+...+-. .++ .+..+
T Consensus 90 ~~l~~~~~~~~~iv~lqNG~~~~-e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~~~~~~~~ 168 (313)
T PRK06249 90 PLIPQVAAPDAKVLLLQNGLGVE-EQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYHSGPAADDGITARVE 168 (313)
T ss_pred HHHhhhcCCCCEEEEecCCCCcH-HHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecCCCCcccchHHHHHH
Confidence 77888888888888877765432 3344444332 222333222221 0111223433221 222 35566
Q ss_pred HHHHHHHHhcCCeEEeCCcchHHHHHHHHHHHH
Q psy755 135 KAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLL 167 (183)
Q Consensus 135 ~~~~l~~~~g~~~~~~g~~g~a~~~k~~~~~~~ 167 (183)
.+.++|+..|..+....+.-...+.|++.|...
T Consensus 169 ~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~ 201 (313)
T PRK06249 169 EGAALFRAAGIDSQAMPDLAQARWQKLVWNIPY 201 (313)
T ss_pred HHHHHHHhCCCCceeCchHHHHHHhHhheecch
Confidence 788889999998888888999999999988644
No 115
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.69 E-value=1.5e-07 Score=72.65 Aligned_cols=99 Identities=19% Similarity=0.238 Sum_probs=75.0
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcc--cCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANM--ALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 78 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ 78 (183)
||+++|+.|...|++|++++|++++.+++.+.+... .+++.+.++++|+||.++|..... .+..+.++++.
T Consensus 162 iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ii~-------~~~l~~~k~~a 234 (287)
T TIGR02853 162 TGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALVLT-------ADVLSKLPKHA 234 (287)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHHhC-------HHHHhcCCCCe
Confidence 689999999999999999999998877776666432 235677889999999999874211 33446678899
Q ss_pred EEEeccCCCchhHHHHHHHHHhcCCcEEeec
Q psy755 79 IVIDSSTVDPQVPQTLSNLAREKQITFLDAP 109 (183)
Q Consensus 79 iiid~s~~~~~~~~~~~~~~~~~g~~~~~~~ 109 (183)
+++|+++....+.. +..++.|.+.+-+|
T Consensus 235 liIDlas~Pg~tdf---~~Ak~~G~~a~~~~ 262 (287)
T TIGR02853 235 VIIDLASKPGGTDF---EYAKKRGIKALLAP 262 (287)
T ss_pred EEEEeCcCCCCCCH---HHHHHCCCEEEEeC
Confidence 99999987766543 45567788766554
No 116
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.68 E-value=2.8e-07 Score=78.98 Aligned_cols=123 Identities=11% Similarity=0.144 Sum_probs=96.5
Q ss_pred EEEecCChHHHHHHhcCCccccccCCCCcEEEeccCCCchhHHHHHHHHHhcCCcEEe-ecccCCHHH----Hh----cC
Q psy755 50 IISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGTKA----AQ----EA 120 (183)
Q Consensus 50 Vi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~----~~----~~ 120 (183)
||+|+|. ..+..++ +++.+.++++++|.|.++++.....++.+.+.....+|+. |||+|.... +. .+
T Consensus 1 vila~Pv-~~~~~~~---~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~ 76 (673)
T PRK11861 1 VLLAAPV-AQTGPLL---ARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVG 76 (673)
T ss_pred CEEEcCH-HHHHHHH---HHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCC
Confidence 6899987 5566666 8999999999999999999998888877766543356888 899995422 21 46
Q ss_pred ceEEEecC---CHHHHHHHHHHHHHhcCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHH
Q psy755 121 TLTFMVGG---DKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAE 176 (183)
Q Consensus 121 ~~~~~~~g---~~~~~~~~~~l~~~~g~~~~~~g~~g~a~~~k~~~~~~~~~~~~~~~E 176 (183)
..++++.. +++.++.++++++.+|.+++.+++...-..+-.++.+-+-...+.++.
T Consensus 77 ~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH~~a~~l~~~ 135 (673)
T PRK11861 77 RNVVLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPHVLSFALVEQ 135 (673)
T ss_pred CeEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66777743 567889999999999999999999888999888887777666555543
No 117
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=98.68 E-value=2.2e-07 Score=72.46 Aligned_cols=96 Identities=22% Similarity=0.257 Sum_probs=79.6
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
+|+.+|+.+...|.+|.+|||+.... ..+.. ..+++++++.||+|++++|....++.++. ++..+.+++|.++
T Consensus 156 IG~~vA~~~~~fgm~V~~~d~~~~~~----~~~~~-~~~l~ell~~sDvv~lh~Plt~~T~~li~--~~~~~~Mk~~a~l 228 (311)
T PRK08410 156 IGKRVAKIAQAFGAKVVYYSTSGKNK----NEEYE-RVSLEELLKTSDIISIHAPLNEKTKNLIA--YKELKLLKDGAIL 228 (311)
T ss_pred HHHHHHHHHhhcCCEEEEECCCcccc----ccCce-eecHHHHhhcCCEEEEeCCCCchhhcccC--HHHHHhCCCCeEE
Confidence 58899999999999999999875321 12332 44899999999999999999998888873 6777889999999
Q ss_pred EeccCCCchhHHHHHHHHHhcCC
Q psy755 81 IDSSTVDPQVPQTLSNLAREKQI 103 (183)
Q Consensus 81 id~s~~~~~~~~~~~~~~~~~g~ 103 (183)
|+++.+.-.+..++.+.++...+
T Consensus 229 IN~aRG~vVDe~AL~~AL~~g~i 251 (311)
T PRK08410 229 INVGRGGIVNEKDLAKALDEKDI 251 (311)
T ss_pred EECCCccccCHHHHHHHHHcCCe
Confidence 99999999999999998876533
No 118
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.68 E-value=6.5e-08 Score=67.43 Aligned_cols=79 Identities=23% Similarity=0.361 Sum_probs=59.1
Q ss_pred cHHHHHHHHhCCCcEEEEcCCch-hHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 2 GSHMARNLLKNGHDVIVYDKNTD-ASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 2 G~~iA~~l~~~g~~V~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
|.+-|.+|.+.|++|++..|... +.+++.+.|.... +..|+++.+|+|++.+|+. ....++. +++.|.|++|+++
T Consensus 16 G~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~-~~~eAv~~aDvV~~L~PD~-~q~~vy~--~~I~p~l~~G~~L 91 (165)
T PF07991_consen 16 GHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVM-SVAEAVKKADVVMLLLPDE-VQPEVYE--EEIAPNLKPGATL 91 (165)
T ss_dssp HHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECC-EHHHHHHC-SEEEE-S-HH-HHHHHHH--HHHHHHS-TT-EE
T ss_pred HHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeec-cHHHHHhhCCEEEEeCChH-HHHHHHH--HHHHhhCCCCCEE
Confidence 78899999999999999988877 7888888888765 8999999999999999984 4556653 7889999999988
Q ss_pred Eecc
Q psy755 81 IDSS 84 (183)
Q Consensus 81 id~s 84 (183)
+=..
T Consensus 92 ~fah 95 (165)
T PF07991_consen 92 VFAH 95 (165)
T ss_dssp EESS
T ss_pred EeCC
Confidence 6433
No 119
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=98.65 E-value=1.5e-07 Score=73.68 Aligned_cols=98 Identities=13% Similarity=0.204 Sum_probs=80.2
Q ss_pred CcHHHHHHHH-hCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcE
Q psy755 1 MGSHMARNLL-KNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 79 (183)
Q Consensus 1 mG~~iA~~l~-~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~i 79 (183)
||+.+|+.+. ..|.+|.+||+.... +.....+... .++++++++||+|++++|....++.++. .+....+++|.+
T Consensus 156 IG~~va~~l~~~fgm~V~~~~~~~~~-~~~~~~~~~~-~~l~ell~~sDvv~lh~plt~~T~~li~--~~~l~~mk~ga~ 231 (323)
T PRK15409 156 IGMALAQRAHFGFNMPILYNARRHHK-EAEERFNARY-CDLDTLLQESDFVCIILPLTDETHHLFG--AEQFAKMKSSAI 231 (323)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCch-hhHHhcCcEe-cCHHHHHHhCCEEEEeCCCChHHhhccC--HHHHhcCCCCeE
Confidence 5889999987 788999999987532 2222335444 4899999999999999999999888873 667888999999
Q ss_pred EEeccCCCchhHHHHHHHHHhcC
Q psy755 80 VIDSSTVDPQVPQTLSNLAREKQ 102 (183)
Q Consensus 80 iid~s~~~~~~~~~~~~~~~~~g 102 (183)
+|+++...-.+..++.+.+....
T Consensus 232 lIN~aRG~vVde~AL~~AL~~g~ 254 (323)
T PRK15409 232 FINAGRGPVVDENALIAALQKGE 254 (323)
T ss_pred EEECCCccccCHHHHHHHHHcCC
Confidence 99999999999999999888653
No 120
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.64 E-value=1.6e-07 Score=75.89 Aligned_cols=97 Identities=19% Similarity=0.237 Sum_probs=81.3
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
||+.+|+.+...|.+|.+||+++... ..+.....+++++++.||+|++++|....++.++. ++....+++|.++
T Consensus 162 IG~~vA~~~~~fGm~V~~~d~~~~~~----~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~--~~~l~~mk~ga~l 235 (409)
T PRK11790 162 IGTQLSVLAESLGMRVYFYDIEDKLP----LGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIG--AEELALMKPGAIL 235 (409)
T ss_pred HHHHHHHHHHHCCCEEEEECCCcccc----cCCceecCCHHHHHhhCCEEEEcCCCChHHhhccC--HHHHhcCCCCeEE
Confidence 58899999999999999999875321 12344556899999999999999999998888873 6677889999999
Q ss_pred EeccCCCchhHHHHHHHHHhcCC
Q psy755 81 IDSSTVDPQVPQTLSNLAREKQI 103 (183)
Q Consensus 81 id~s~~~~~~~~~~~~~~~~~g~ 103 (183)
|+++.+...+..++.+.+....+
T Consensus 236 IN~aRG~~vde~aL~~aL~~g~i 258 (409)
T PRK11790 236 INASRGTVVDIDALADALKSGHL 258 (409)
T ss_pred EECCCCcccCHHHHHHHHHcCCc
Confidence 99999999999999998887543
No 121
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=98.60 E-value=2.1e-07 Score=74.27 Aligned_cols=94 Identities=21% Similarity=0.279 Sum_probs=76.0
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChH----HHHHHhcCCccccccCCC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQ----DVLDAYDGSDGILKHAKP 76 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~----~~~~v~~~~~~l~~~l~~ 76 (183)
||+.+|+.+...|++|.+||+..... .+.....++++++++||+|++++|... .+..++ .++....+++
T Consensus 127 IG~~va~~l~a~G~~V~~~Dp~~~~~-----~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li--~~~~l~~mk~ 199 (381)
T PRK00257 127 VGGRLVRVLRGLGWKVLVCDPPRQEA-----EGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLL--DEAFLASLRP 199 (381)
T ss_pred HHHHHHHHHHHCCCEEEEECCccccc-----ccCccccCHHHHHhhCCEEEEeCcCCCCccccccccC--CHHHHhcCCC
Confidence 68999999999999999999764321 122234589999999999999999865 355655 2567788999
Q ss_pred CcEEEeccCCCchhHHHHHHHHHhc
Q psy755 77 GVIVIDSSTVDPQVPQTLSNLAREK 101 (183)
Q Consensus 77 ~~iiid~s~~~~~~~~~~~~~~~~~ 101 (183)
|.++||++.+...+..++.+.+...
T Consensus 200 gailIN~aRG~vVde~AL~~aL~~g 224 (381)
T PRK00257 200 GAWLINASRGAVVDNQALREALLSG 224 (381)
T ss_pred CeEEEECCCCcccCHHHHHHHHHhC
Confidence 9999999999999999999888765
No 122
>PRK06487 glycerate dehydrogenase; Provisional
Probab=98.58 E-value=5.5e-07 Score=70.48 Aligned_cols=93 Identities=18% Similarity=0.219 Sum_probs=78.1
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
+|+.+|+.+...|.+|.+||+.... . ... ..+++++++.||+|++++|....++.++. ++..+.+++|.++
T Consensus 159 IG~~vA~~l~~fgm~V~~~~~~~~~-~-----~~~-~~~l~ell~~sDiv~l~lPlt~~T~~li~--~~~~~~mk~ga~l 229 (317)
T PRK06487 159 LGGAVARLAEAFGMRVLIGQLPGRP-A-----RPD-RLPLDELLPQVDALTLHCPLTEHTRHLIG--ARELALMKPGALL 229 (317)
T ss_pred HHHHHHHHHhhCCCEEEEECCCCCc-c-----ccc-ccCHHHHHHhCCEEEECCCCChHHhcCcC--HHHHhcCCCCeEE
Confidence 5889999999999999999986431 1 112 34899999999999999999998888873 7778899999999
Q ss_pred EeccCCCchhHHHHHHHHHhcC
Q psy755 81 IDSSTVDPQVPQTLSNLAREKQ 102 (183)
Q Consensus 81 id~s~~~~~~~~~~~~~~~~~g 102 (183)
|+++...-.+..++.+.+....
T Consensus 230 IN~aRG~vVde~AL~~AL~~g~ 251 (317)
T PRK06487 230 INTARGGLVDEQALADALRSGH 251 (317)
T ss_pred EECCCccccCHHHHHHHHHcCC
Confidence 9999999999999999888653
No 123
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=98.52 E-value=2.1e-06 Score=64.45 Aligned_cols=111 Identities=17% Similarity=0.188 Sum_probs=86.1
Q ss_pred CCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEeccCCCchhHHHHHHHHHhcCCc---EEeec
Q psy755 33 GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQIT---FLDAP 109 (183)
Q Consensus 33 g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~---~~~~~ 109 (183)
|+..+++-.|+++++|++|+=+|.+.....++ +.+.+++++|.+|.+.++.+|...-.+.+.+.++.+. |..+.
T Consensus 128 GvkVtsDD~EAvk~aei~I~ftPfG~~t~~Ii---kki~~~ipEgAII~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaa 204 (342)
T PRK00961 128 GLKVTTDDREAVADADIVITWLPKGGMQPDII---EKFADDIKEGAIVTHACTIPTTKFAKIFKDLGRDDLNVTSYHPGA 204 (342)
T ss_pred CceEecCcHHHhcCCCEEEEecCCCCCchHHH---HHHHhhCCCCCEEeccccCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence 57777888889999999999999988777777 8999999999999999999998877777776655433 33344
Q ss_pred ccCCHHHHhcCceEEEec-CCHHHHHHHHHHHHHhcCCeEEeC
Q psy755 110 VSGGTKAAQEATLTFMVG-GDKSSLEKAKPILKCMGRNIVHCG 151 (183)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~g~~~~~~g 151 (183)
+.+.+ |+..+-.+ .++++.+++.+|.++.++..+.+-
T Consensus 205 VPgt~-----Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~P 242 (342)
T PRK00961 205 VPEMK-----GQVYIAEGYADEEAVEKLYEIGKKARGNAFKMP 242 (342)
T ss_pred CCCCC-----CceecccccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 55544 43333222 488999999999999999877654
No 124
>PRK06932 glycerate dehydrogenase; Provisional
Probab=98.50 E-value=7.2e-07 Score=69.72 Aligned_cols=95 Identities=14% Similarity=0.169 Sum_probs=78.5
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
+|+.+|+.+...|.+|.+||++.... . . ....++++++..||+|++++|....++.++. ++....+++|.++
T Consensus 158 IG~~va~~l~~fg~~V~~~~~~~~~~--~---~-~~~~~l~ell~~sDiv~l~~Plt~~T~~li~--~~~l~~mk~ga~l 229 (314)
T PRK06932 158 LGTEVGRLAQALGMKVLYAEHKGASV--C---R-EGYTPFEEVLKQADIVTLHCPLTETTQNLIN--AETLALMKPTAFL 229 (314)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcccc--c---c-cccCCHHHHHHhCCEEEEcCCCChHHhcccC--HHHHHhCCCCeEE
Confidence 58899999999999999999864311 0 1 1235899999999999999999998888873 6778889999999
Q ss_pred EeccCCCchhHHHHHHHHHhcCC
Q psy755 81 IDSSTVDPQVPQTLSNLAREKQI 103 (183)
Q Consensus 81 id~s~~~~~~~~~~~~~~~~~g~ 103 (183)
|+++...-.+..++.+.++...+
T Consensus 230 IN~aRG~~Vde~AL~~aL~~g~i 252 (314)
T PRK06932 230 INTGRGPLVDEQALLDALENGKI 252 (314)
T ss_pred EECCCccccCHHHHHHHHHcCCc
Confidence 99999999999999998886533
No 125
>KOG0069|consensus
Probab=98.49 E-value=8e-07 Score=69.23 Aligned_cols=97 Identities=11% Similarity=0.213 Sum_probs=84.5
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
||..+|++|...|..+..+.|++...+...+.+.. ..+.++.+.++|+|++++|....+.+++. +++...+++|.+|
T Consensus 173 IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~-~~d~~~~~~~sD~ivv~~pLt~~T~~liN--k~~~~~mk~g~vl 249 (336)
T KOG0069|consen 173 IGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAE-FVDIEELLANSDVIVVNCPLTKETRHLIN--KKFIEKMKDGAVL 249 (336)
T ss_pred HHHHHHHhhhhccceeeeecccCCchhhHHHhccc-ccCHHHHHhhCCEEEEecCCCHHHHHHhh--HHHHHhcCCCeEE
Confidence 68999999999996677778988877777665544 45899999999999999999999999984 8888999999999
Q ss_pred EeccCCCchhHHHHHHHHHh
Q psy755 81 IDSSTVDPQVPQTLSNLARE 100 (183)
Q Consensus 81 id~s~~~~~~~~~~~~~~~~ 100 (183)
|+++...-.+.+++.+.+++
T Consensus 250 VN~aRG~iide~~l~eaL~s 269 (336)
T KOG0069|consen 250 VNTARGAIIDEEALVEALKS 269 (336)
T ss_pred EeccccccccHHHHHHHHhc
Confidence 99999999998899888775
No 126
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.48 E-value=4.5e-07 Score=69.79 Aligned_cols=64 Identities=23% Similarity=0.333 Sum_probs=53.9
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
||..||..|.++|++|++|++... ++.+.+++||+||.+++.+..++.. .+++|.+|
T Consensus 171 vG~PmA~~L~~~gatVtv~~~~t~--------------~l~e~~~~ADIVIsavg~~~~v~~~---------~ik~GaiV 227 (301)
T PRK14194 171 VGKPMAALLLQAHCSVTVVHSRST--------------DAKALCRQADIVVAAVGRPRLIDAD---------WLKPGAVV 227 (301)
T ss_pred cHHHHHHHHHHCCCEEEEECCCCC--------------CHHHHHhcCCEEEEecCChhcccHh---------hccCCcEE
Confidence 899999999999999999976542 7888899999999999987655444 37899999
Q ss_pred EeccCCC
Q psy755 81 IDSSTVD 87 (183)
Q Consensus 81 id~s~~~ 87 (183)
||+|...
T Consensus 228 IDvgin~ 234 (301)
T PRK14194 228 IDVGINR 234 (301)
T ss_pred EEecccc
Confidence 9999543
No 127
>KOG2380|consensus
Probab=98.47 E-value=4.4e-06 Score=64.74 Aligned_cols=145 Identities=18% Similarity=0.270 Sum_probs=104.6
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHh-ccCCEEEEecCChHHHHHHhcCCcccccc-CCCCc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLA-SGAEFIISMLPASQDVLDAYDGSDGILKH-AKPGV 78 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~adiVi~~vp~~~~~~~v~~~~~~l~~~-l~~~~ 78 (183)
||.-+|..|.++||.|...||+. .-+....-|....+.+.+.+ +.+|+|++|+.. ..+++++ ....+. ++.|+
T Consensus 63 mGqflAetli~aGh~li~hsRsd-yssaa~~yg~~~ft~lhdlcerhpDvvLlctsi-lsiekil---atypfqrlrrgt 137 (480)
T KOG2380|consen 63 MGQFLAETLIDAGHGLICHSRSD-YSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSI-LSIEKIL---ATYPFQRLRRGT 137 (480)
T ss_pred HHHHHHHHHHhcCceeEecCcch-hHHHHHHhcccccccHHHHHhcCCCEEEEEehh-hhHHHHH---HhcCchhhccce
Confidence 79999999999999999999998 33333444777777777766 479999999965 7788887 555554 88999
Q ss_pred EEEeccCCCchhHHHHHHHHHhcCCcEE-eecccCCHHHHhc--C-ceEEE-e-cC----CHHHHHHHHHHHHHhcCCeE
Q psy755 79 IVIDSSTVDPQVPQTLSNLAREKQITFL-DAPVSGGTKAAQE--A-TLTFM-V-GG----DKSSLEKAKPILKCMGRNIV 148 (183)
Q Consensus 79 iiid~s~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~--~-~~~~~-~-~g----~~~~~~~~~~l~~~~g~~~~ 148 (183)
+++|..+++.-........+++. +..+ -|||+|..+.... | ++++. . .+ .++-.+.+.+++...|.+.+
T Consensus 138 lfvdvlSvKefek~lfekYLPkd-fDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~ercE~fleIf~cegckmV 216 (480)
T KOG2380|consen 138 LFVDVLSVKEFEKELFEKYLPKD-FDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPERCEFFLEIFACEGCKMV 216 (480)
T ss_pred eEeeeeecchhHHHHHHHhCccc-cceEeecCCcCCCcCCCccccCceEEEEeeccccccchHHHHHHHHHHHhcCCeEE
Confidence 99999999988877777776654 3333 3788875421111 1 22222 1 12 36778899999999999888
Q ss_pred EeC
Q psy755 149 HCG 151 (183)
Q Consensus 149 ~~g 151 (183)
++.
T Consensus 217 emS 219 (480)
T KOG2380|consen 217 EMS 219 (480)
T ss_pred EEE
Confidence 775
No 128
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.45 E-value=1.4e-06 Score=67.49 Aligned_cols=98 Identities=20% Similarity=0.248 Sum_probs=73.0
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCccc--CCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMA--LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 78 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ 78 (183)
+|+.++..|.+.|.+|+++||++++.+.+...|.... +++.+.+.++|+||.++|...-. ++..+.++++.
T Consensus 163 iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~-------~~~l~~~~~g~ 235 (296)
T PRK08306 163 TGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALVLT-------KEVLSKMPPEA 235 (296)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhhhh-------HHHHHcCCCCc
Confidence 5788999999999999999999988777776665432 35677889999999999864221 33456678999
Q ss_pred EEEeccCCCchhHHHHHHHHHhcCCcEEee
Q psy755 79 IVIDSSTVDPQVPQTLSNLAREKQITFLDA 108 (183)
Q Consensus 79 iiid~s~~~~~~~~~~~~~~~~~g~~~~~~ 108 (183)
+|+|+++....+.. +..++.|+..+..
T Consensus 236 vIIDla~~pggtd~---~~a~~~Gv~~~~~ 262 (296)
T PRK08306 236 LIIDLASKPGGTDF---EYAEKRGIKALLA 262 (296)
T ss_pred EEEEEccCCCCcCe---eehhhCCeEEEEE
Confidence 99999987655432 3445667766653
No 129
>PLN02306 hydroxypyruvate reductase
Probab=98.44 E-value=1.8e-06 Score=69.12 Aligned_cols=99 Identities=16% Similarity=0.148 Sum_probs=78.5
Q ss_pred CcHHHHHHHH-hCCCcEEEEcCCchh-HHHHH-HcC------------CcccCCHHHHhccCCEEEEecCChHHHHHHhc
Q psy755 1 MGSHMARNLL-KNGHDVIVYDKNTDA-SQTLA-KEG------------ANMALSLSTLASGAEFIISMLPASQDVLDAYD 65 (183)
Q Consensus 1 mG~~iA~~l~-~~g~~V~~~~~~~~~-~~~~~-~~g------------~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~ 65 (183)
+|+.+|+.+. ..|.+|.+||++... .+... ..+ .....+++++++.||+|++++|....++.++.
T Consensus 176 IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin 255 (386)
T PLN02306 176 IGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLIN 255 (386)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcC
Confidence 5889999985 779999999988642 12111 111 12245899999999999999999998888874
Q ss_pred CCccccccCCCCcEEEeccCCCchhHHHHHHHHHhc
Q psy755 66 GSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREK 101 (183)
Q Consensus 66 ~~~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~ 101 (183)
.+....+++|.++|+++.+.-.+..++.+.++..
T Consensus 256 --~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg 289 (386)
T PLN02306 256 --KERLALMKKEAVLVNASRGPVIDEVALVEHLKAN 289 (386)
T ss_pred --HHHHHhCCCCeEEEECCCccccCHHHHHHHHHhC
Confidence 6778899999999999999988988999888765
No 130
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=98.44 E-value=1.1e-06 Score=70.12 Aligned_cols=94 Identities=19% Similarity=0.247 Sum_probs=74.6
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHH----HHHHhcCCccccccCCC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQD----VLDAYDGSDGILKHAKP 76 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~----~~~v~~~~~~l~~~l~~ 76 (183)
||+.+|+.|...|++|.+||+..... ... ....++++++++||+|++++|.... ...++ .++....+++
T Consensus 127 IG~~vA~~l~a~G~~V~~~dp~~~~~----~~~-~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li--~~~~l~~mk~ 199 (378)
T PRK15438 127 VGRRLQARLEALGIKTLLCDPPRADR----GDE-GDFRSLDELVQEADILTFHTPLFKDGPYKTLHLA--DEKLIRSLKP 199 (378)
T ss_pred HHHHHHHHHHHCCCEEEEECCccccc----ccc-cccCCHHHHHhhCCEEEEeCCCCCCccccccccc--CHHHHhcCCC
Confidence 68999999999999999999754211 111 1345899999999999999997653 55554 2566788999
Q ss_pred CcEEEeccCCCchhHHHHHHHHHhc
Q psy755 77 GVIVIDSSTVDPQVPQTLSNLAREK 101 (183)
Q Consensus 77 ~~iiid~s~~~~~~~~~~~~~~~~~ 101 (183)
|.++||++.+...+..++.+.++..
T Consensus 200 gailIN~aRG~vVDe~AL~~aL~~g 224 (378)
T PRK15438 200 GAILINACRGAVVDNTALLTCLNEG 224 (378)
T ss_pred CcEEEECCCchhcCHHHHHHHHHhC
Confidence 9999999999999999999888765
No 131
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.44 E-value=7.3e-07 Score=68.70 Aligned_cols=63 Identities=24% Similarity=0.366 Sum_probs=52.5
Q ss_pred CcHHHHHHHHhCCCcEEEEc-CCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcE
Q psy755 1 MGSHMARNLLKNGHDVIVYD-KNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 79 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~i 79 (183)
||..||..|.+.|++|++|+ |++ ++.+.+++||+||.+++.+..++.. ++++|.+
T Consensus 170 mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~~v~~~---------~lk~Gav 225 (296)
T PRK14188 170 VGKPMAQLLLAANATVTIAHSRTR---------------DLPAVCRRADILVAAVGRPEMVKGD---------WIKPGAT 225 (296)
T ss_pred hHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHHhcCCEEEEecCChhhcchh---------eecCCCE
Confidence 79999999999999999994 765 4678889999999999997654443 3789999
Q ss_pred EEeccCCC
Q psy755 80 VIDSSTVD 87 (183)
Q Consensus 80 iid~s~~~ 87 (183)
|||++...
T Consensus 226 VIDvGin~ 233 (296)
T PRK14188 226 VIDVGINR 233 (296)
T ss_pred EEEcCCcc
Confidence 99998644
No 132
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=98.40 E-value=4.6e-06 Score=65.01 Aligned_cols=161 Identities=19% Similarity=0.199 Sum_probs=109.7
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcc------------cCCHHHHhccCCEEEEecCChHHHHHHhcCCc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANM------------ALSLSTLASGAEFIISMLPASQDVLDAYDGSD 68 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~------------~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~ 68 (183)
||+-++..|.++|++|+++.|++. ++++.+.|... .....+....+|+||++++.. +++.++ +
T Consensus 11 vG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~-q~~~al---~ 85 (307)
T COG1893 11 IGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAY-QLEEAL---P 85 (307)
T ss_pred HHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEeccc-cHHHHH---H
Confidence 688999999999988999999887 77877765221 122234455899999999875 467777 8
Q ss_pred cccccCCCCcEEEeccCCCchhHHHHHHHHHhc----CCcEEeecccCCH---HHHhcCceEEEe--cCCHHHHHHHHHH
Q psy755 69 GILKHAKPGVIVIDSSTVDPQVPQTLSNLAREK----QITFLDAPVSGGT---KAAQEATLTFMV--GGDKSSLEKAKPI 139 (183)
Q Consensus 69 ~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~---~~~~~~~~~~~~--~g~~~~~~~~~~l 139 (183)
.+.+.+++.+.|+-.-+...... .+.+..++. |+.++.+. ..++ .....|...+-. ++.++..+.+.++
T Consensus 86 ~l~~~~~~~t~vl~lqNG~g~~e-~l~~~~~~~~il~G~~~~~a~-~~~~g~v~~~g~g~~~ig~~~~~~~~~~~~i~~~ 163 (307)
T COG1893 86 SLAPLLGPNTVVLFLQNGLGHEE-ELRKILPKETVLGGVTTHGAV-REGPGHVVHTGLGDTVIGELRGGRDELVKALAEL 163 (307)
T ss_pred HhhhcCCCCcEEEEEeCCCcHHH-HHHHhCCcceEEEEEeeeeeE-ecCCceEEEecCCcEEEccCCCCchHHHHHHHHH
Confidence 99999999998887777766654 455544443 11122211 1111 111123433321 2344677888888
Q ss_pred HHHhcCCeEEeCCcchHHHHHHHHHHHHH
Q psy755 140 LKCMGRNIVHCGDSGNGQVAKLCNNMLLG 168 (183)
Q Consensus 140 ~~~~g~~~~~~g~~g~a~~~k~~~~~~~~ 168 (183)
|+..|.+..+..+.-...+-|++-|.-..
T Consensus 164 ~~~a~~~~~~~~di~~~~w~Kl~~N~~in 192 (307)
T COG1893 164 FKEAGLEVELHPDILAAIWRKLVVNAAIN 192 (307)
T ss_pred HHhCCCCeEEcHHHHHHHHHHHHhhhccc
Confidence 99999988888888889999998887665
No 133
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.39 E-value=2.9e-06 Score=65.04 Aligned_cols=98 Identities=19% Similarity=0.158 Sum_probs=72.1
Q ss_pred CcHHHHHHHHhC--CCcEE-EEcCCchhHHHHHHc-CC-cccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCC
Q psy755 1 MGSHMARNLLKN--GHDVI-VYDKNTDASQTLAKE-GA-NMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAK 75 (183)
Q Consensus 1 mG~~iA~~l~~~--g~~V~-~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~ 75 (183)
||..+++.|.+. ++++. +|||++++.+.+.+. +. ...+++++++.++|+|++|+|.... ..+. ...+.
T Consensus 17 IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h-~e~~------~~aL~ 89 (271)
T PRK13302 17 IGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVL-RAIV------EPVLA 89 (271)
T ss_pred HHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHH-HHHH------HHHHH
Confidence 578889888863 67776 789999988776654 53 4567899999999999999998654 3332 34466
Q ss_pred CCcEEEeccCCCchhHHHHHHHHHhcCCcE
Q psy755 76 PGVIVIDSSTVDPQVPQTLSNLAREKQITF 105 (183)
Q Consensus 76 ~~~iiid~s~~~~~~~~~~~~~~~~~g~~~ 105 (183)
.|+.++..+.......+++.+..++.|.++
T Consensus 90 aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l 119 (271)
T PRK13302 90 AGKKAIVLSVGALLRNEDLIDLARQNGGQI 119 (271)
T ss_pred cCCcEEEecchhHHhHHHHHHHHHHcCCEE
Confidence 788777666555556677888888888764
No 134
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=98.38 E-value=2.4e-06 Score=66.57 Aligned_cols=160 Identities=14% Similarity=0.032 Sum_probs=100.4
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHc-CCccc-----------CCHHHHhccCCEEEEecCChHHHHHHhcCCc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKE-GANMA-----------LSLSTLASGAEFIISMLPASQDVLDAYDGSD 68 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~-g~~~~-----------~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~ 68 (183)
||+-+|..|.+.|++|++++|+.++++.+.+. |.... ....+.....|+||+|++. .++..++ +
T Consensus 13 iG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~-~~~~~al---~ 88 (305)
T PRK05708 13 LGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKA-YDAEPAV---A 88 (305)
T ss_pred HHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCH-HhHHHHH---H
Confidence 68899999999999999999998888877654 32111 0011123468999999977 4567776 8
Q ss_pred cccccCCCCcEEEeccCCCchhHHHHHHHHHhc----CCcEEeecccC-C-HHHHhcCceEEEec-CCHHHHHHHHHHHH
Q psy755 69 GILKHAKPGVIVIDSSTVDPQVPQTLSNLAREK----QITFLDAPVSG-G-TKAAQEATLTFMVG-GDKSSLEKAKPILK 141 (183)
Q Consensus 69 ~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~----g~~~~~~~~~~-~-~~~~~~~~~~~~~~-g~~~~~~~~~~l~~ 141 (183)
.+.+.+.+++.|+-+-|+..... .+.+.+... |..++.+...+ + ......+. +..+ .+.+..+.+.++|.
T Consensus 89 ~l~~~l~~~t~vv~lQNGv~~~e-~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~--~~~G~~~~~~~~~l~~~l~ 165 (305)
T PRK05708 89 SLAHRLAPGAELLLLQNGLGSQD-AVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGF--TWLGDPRNPTAPAWLDDLR 165 (305)
T ss_pred HHHhhCCCCCEEEEEeCCCCCHH-HHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEE--EEEcCCCCcchHHHHHHHH
Confidence 88999999998888877765432 333333321 11122211111 1 11111122 2233 22344567778888
Q ss_pred HhcCCeEEeCCcchHHHHHHHHHHHH
Q psy755 142 CMGRNIVHCGDSGNGQVAKLCNNMLL 167 (183)
Q Consensus 142 ~~g~~~~~~g~~g~a~~~k~~~~~~~ 167 (183)
..|....+..+.-...+-|++.|...
T Consensus 166 ~ag~~~~~~~di~~~~W~Kl~~N~~~ 191 (305)
T PRK05708 166 EAGIPHEWTVDILTRLWRKLALNCAI 191 (305)
T ss_pred hcCCCCccCHHHHHHHHHHHHHHccc
Confidence 88877776777888889999988743
No 135
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=98.37 E-value=1.3e-06 Score=66.95 Aligned_cols=101 Identities=21% Similarity=0.251 Sum_probs=71.2
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHc----CCcccCCHHHH-hccCCEEEEecCChHH--HHHHhcCCcccccc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKE----GANMALSLSTL-ASGAEFIISMLPASQD--VLDAYDGSDGILKH 73 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~----g~~~~~~~~~~-~~~adiVi~~vp~~~~--~~~v~~~~~~l~~~ 73 (183)
||++++..|++.|++|++++|++++.+.+.+. +.....+..+. ..++|+||.++|.+.. ..... -....
T Consensus 128 ~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~~~~----~~~~~ 203 (270)
T TIGR00507 128 AARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNIDEPP----VPAEK 203 (270)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCCCCCC----CCHHH
Confidence 58899999999999999999999887766543 22122233332 3579999999997531 11110 01235
Q ss_pred CCCCcEEEeccCCCchhHHHHHHHHHhcCCcEEe
Q psy755 74 AKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 107 (183)
Q Consensus 74 l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~ 107 (183)
++++.+++|++...+.+ .+.+..+++|.++++
T Consensus 204 l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~~vd 235 (270)
T TIGR00507 204 LKEGMVVYDMVYNPGET--PFLAEAKSLGTKTID 235 (270)
T ss_pred cCCCCEEEEeccCCCCC--HHHHHHHHCCCeeeC
Confidence 77899999999877766 477778888988887
No 136
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.34 E-value=3.3e-06 Score=61.87 Aligned_cols=99 Identities=17% Similarity=0.199 Sum_probs=71.0
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHc-CCcccCCHHHHh-ccCCEEEEecCChHHHHHHhcCCccccccCCCCc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKE-GANMALSLSTLA-SGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 78 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~-g~~~~~~~~~~~-~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ 78 (183)
||..+|+.|.+.|++|+++|+++++.+.+.+. +....+. .++. .+||+++.|.....-... ..+.+ +.+
T Consensus 39 vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~-~~l~~~~~Dv~vp~A~~~~I~~~-------~~~~l-~~~ 109 (200)
T cd01075 39 VGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAP-EEIYSVDADVFAPCALGGVINDD-------TIPQL-KAK 109 (200)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcc-hhhccccCCEEEecccccccCHH-------HHHHc-CCC
Confidence 68999999999999999999999988887665 6554433 4444 479999977654322222 23344 467
Q ss_pred EEEeccCCCchhHHHHHHHHHhcCCcEEeec
Q psy755 79 IVIDSSTVDPQVPQTLSNLAREKQITFLDAP 109 (183)
Q Consensus 79 iiid~s~~~~~~~~~~~~~~~~~g~~~~~~~ 109 (183)
+|++..+....+ ....+.+.++|+.|++.-
T Consensus 110 ~v~~~AN~~~~~-~~~~~~L~~~Gi~~~Pd~ 139 (200)
T cd01075 110 AIAGAANNQLAD-PRHGQMLHERGILYAPDY 139 (200)
T ss_pred EEEECCcCccCC-HhHHHHHHHCCCEEeCce
Confidence 888888765543 567778889999998843
No 137
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.32 E-value=1.1e-06 Score=68.77 Aligned_cols=98 Identities=18% Similarity=0.198 Sum_probs=69.2
Q ss_pred CcHHHHHHHHh--CCCcEEEEcCCchhHHHHHHc----C--CcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccc
Q psy755 1 MGSHMARNLLK--NGHDVIVYDKNTDASQTLAKE----G--ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 72 (183)
Q Consensus 1 mG~~iA~~l~~--~g~~V~~~~~~~~~~~~~~~~----g--~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~ 72 (183)
||..++..+.. ...+|++|+|++++.+.+.+. + +...+++++++++||+|+.++|.+. .++ . .+
T Consensus 136 ~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~~---pvl---~--~~ 207 (314)
T PRK06141 136 LASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLSTE---PLV---R--GE 207 (314)
T ss_pred HHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCCC---CEe---c--HH
Confidence 56777765543 346899999999998887664 4 4456788889999999999998753 333 1 24
Q ss_pred cCCCCcEEEeccCCCchhHHHHHHHHHhcCCcEEe
Q psy755 73 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 107 (183)
Q Consensus 73 ~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~ 107 (183)
.+++|+ +|++.+..+...+++...+.+++..|+|
T Consensus 208 ~l~~g~-~i~~ig~~~~~~~El~~~~~~~a~~~vD 241 (314)
T PRK06141 208 WLKPGT-HLDLVGNFTPDMRECDDEAIRRASVYVD 241 (314)
T ss_pred HcCCCC-EEEeeCCCCcccccCCHHHHhcCcEEEc
Confidence 677888 5666666665666666666666666777
No 138
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=98.27 E-value=1.6e-05 Score=59.90 Aligned_cols=111 Identities=14% Similarity=0.156 Sum_probs=85.6
Q ss_pred CCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEeccCCCchhHHHHHHHHHhcCCc---EEeec
Q psy755 33 GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQIT---FLDAP 109 (183)
Q Consensus 33 g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~---~~~~~ 109 (183)
|+..+++-.|+++++|++|+=+|.+.....++ +.+.+++++|.+|.+.++.+|...-.+.+.+.++.+. |..+.
T Consensus 126 GvkVtsDD~EAv~~aei~I~ftPfG~~q~~Ii---kkii~~lpEgAII~~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaa 202 (340)
T TIGR01723 126 GLKVTTDDREAVEDADIIITWLPKGNKQPDII---KKFIDDIPEGAIVTHACTIPTTKFAKIFEDLGREDLNVTSYHPGC 202 (340)
T ss_pred CceEecCcHHHhcCCCEEEEEcCCCCCchHHH---HHHHhhCCCCCEEeccccCChHHHHHHHHhhCcccCCeeccCCCC
Confidence 57778888889999999999999988777777 8999999999999999999998877777776655433 33334
Q ss_pred ccCCHHHHhcCceEEEec-CCHHHHHHHHHHHHHhcCCeEEeC
Q psy755 110 VSGGTKAAQEATLTFMVG-GDKSSLEKAKPILKCMGRNIVHCG 151 (183)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~g~~~~~~g 151 (183)
+.+.+ +...+..+ .++++.+++.+|.++.++.++.+-
T Consensus 203 VPgt~-----~q~Yi~egyAtEEqI~klveL~~sa~k~ay~~P 240 (340)
T TIGR01723 203 VPEMK-----GQVYIAEGYASEEAVNKLYELGKKARGKAFKMP 240 (340)
T ss_pred CCCCC-----CceEeecccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 55443 22233322 588999999999999998877654
No 139
>KOG2666|consensus
Probab=98.24 E-value=6e-05 Score=58.07 Aligned_cols=168 Identities=15% Similarity=0.221 Sum_probs=110.9
Q ss_pred cEEEEcCCchhHHHHHHc-------------------CCcccCCHHHHhccCCEEEEecCChHHH-----------HHHh
Q psy755 15 DVIVYDKNTDASQTLAKE-------------------GANMALSLSTLASGAEFIISMLPASQDV-----------LDAY 64 (183)
Q Consensus 15 ~V~~~~~~~~~~~~~~~~-------------------g~~~~~~~~~~~~~adiVi~~vp~~~~~-----------~~v~ 64 (183)
+|++.|.|..++..+... +.-+.++.+..++.+|+||+.|..|.-+ +.+-
T Consensus 28 ~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~eadlvfisvntptkt~g~gkg~aadlky~e 107 (481)
T KOG2666|consen 28 EVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWE 107 (481)
T ss_pred EEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcceEEEEecCCcccccCCCCcccchhHHH
Confidence 788889998876554331 2345678888899999999999655322 1110
Q ss_pred cCCccccccCCCCcEEEeccCCCchhHHHHHHHHHh--cCCcE--Eeeccc--CCHHHHh--cCceEEEecCCH-----H
Q psy755 65 DGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLARE--KQITF--LDAPVS--GGTKAAQ--EATLTFMVGGDK-----S 131 (183)
Q Consensus 65 ~~~~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~--~g~~~--~~~~~~--~~~~~~~--~~~~~~~~~g~~-----~ 131 (183)
...+.+.+.-...++++.-|++.....+.+...+.. .|++| ++.|-+ .|..-.. .+. -+++||.+ +
T Consensus 108 s~ar~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~fqilsnpeflaegtaikdl~npd-rvligg~etpeg~~ 186 (481)
T KOG2666|consen 108 SAARMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQILSNPEFLAEGTAIKDLFNPD-RVLIGGRETPEGFQ 186 (481)
T ss_pred HHHHHHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCceeEeccChHHhcccchhhhhcCCc-eEEECCCCChhHHH
Confidence 001445566667899999999998888888888753 25543 333322 1211111 122 24555532 4
Q ss_pred HHHHHHHHHHHhcC-CeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy755 132 SLEKAKPILKCMGR-NIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVK 183 (183)
Q Consensus 132 ~~~~~~~l~~~~g~-~~~~~g~~g~a~~~k~~~~~~~~~~~~~~~E~~~~~~~ 183 (183)
+++.+..+++.+-. .-+...+.=+++.-|++-|.+.+-.++.++-+.++|+.
T Consensus 187 av~~l~~vyehwvp~~~iittntwsselsklaanaflaqrissins~salcea 239 (481)
T KOG2666|consen 187 AVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRISSINSMSALCEA 239 (481)
T ss_pred HHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 55666667776543 34556678899999999999999999999999999873
No 140
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.19 E-value=1.4e-05 Score=63.80 Aligned_cols=107 Identities=23% Similarity=0.274 Sum_probs=82.7
Q ss_pred CcHHHHHHHHhCC-CcEEEEcCCchhHHHHHHcC----------CcccCCHHHHhccCCEEEEecCChHHHHHHhcCCcc
Q psy755 1 MGSHMARNLLKNG-HDVIVYDKNTDASQTLAKEG----------ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDG 69 (183)
Q Consensus 1 mG~~iA~~l~~~g-~~V~~~~~~~~~~~~~~~~g----------~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~ 69 (183)
+|+.+|..|++.| ++|++-|||.++++++.... +...+.+.+++++.|+||.+.|..... .++
T Consensus 12 Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~~-~i~----- 85 (389)
T COG1748 12 VGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFVDL-TIL----- 85 (389)
T ss_pred hHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchhhH-HHH-----
Confidence 4889999999999 89999999999999887652 122234567888999999999987765 332
Q ss_pred ccccCCCCcEEEeccCCCchhHHHHHHHHHhcCCcEEe-ecccCCHH
Q psy755 70 ILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGTK 115 (183)
Q Consensus 70 l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~ 115 (183)
...+..|..++|+|...+.. ..+.+.+.+.|+..+. +.+..|..
T Consensus 86 -ka~i~~gv~yvDts~~~~~~-~~~~~~a~~Agit~v~~~G~dPGi~ 130 (389)
T COG1748 86 -KACIKTGVDYVDTSYYEEPP-WKLDEEAKKAGITAVLGCGFDPGIT 130 (389)
T ss_pred -HHHHHhCCCEEEcccCCchh-hhhhHHHHHcCeEEEcccCcCcchH
Confidence 56778899999999888776 7788888888876554 56666543
No 141
>KOG2711|consensus
Probab=98.16 E-value=3.4e-05 Score=59.81 Aligned_cols=175 Identities=16% Similarity=0.159 Sum_probs=110.7
Q ss_pred CcHHHHHHHHhC--CC-----cEEEEcCCch------hHHHHHH---------------cCCcccCCHHHHhccCCEEEE
Q psy755 1 MGSHMARNLLKN--GH-----DVIVYDKNTD------ASQTLAK---------------EGANMALSLSTLASGAEFIIS 52 (183)
Q Consensus 1 mG~~iA~~l~~~--g~-----~V~~~~~~~~------~~~~~~~---------------~g~~~~~~~~~~~~~adiVi~ 52 (183)
||++||+.+.++ ++ +|..|-+..+ ++..... .++...+++.+++.++|+++.
T Consensus 32 WGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~ea~~dADilvf 111 (372)
T KOG2711|consen 32 WGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVEAAKDADILVF 111 (372)
T ss_pred HHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHHHHhccCCEEEE
Confidence 688888887654 12 5777744332 2222211 124567789999999999999
Q ss_pred ecCChHHHHHHhcCCccccccCCCCcEEEeccCCCch-----hHHHHHHHHHhc-CC--cEEeecccCCHHHHhc-CceE
Q psy755 53 MLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQ-----VPQTLSNLAREK-QI--TFLDAPVSGGTKAAQE-ATLT 123 (183)
Q Consensus 53 ~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~~~-----~~~~~~~~~~~~-g~--~~~~~~~~~~~~~~~~-~~~~ 123 (183)
.+|. |.+..++ +++..+++++..-|.++..... ...-+.+.+.+. |+ .++..|-......... -..+
T Consensus 112 ~vPh-Qf~~~ic---~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL~GaNiA~EVa~~~f~e~t 187 (372)
T KOG2711|consen 112 VVPH-QFIPRIC---EQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVLMGANIASEVANEKFCETT 187 (372)
T ss_pred eCCh-hhHHHHH---HHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCceeecCCchHHHHHhcccccee
Confidence 9987 7889898 9999999999998887754221 123333444333 32 2333333332222222 2222
Q ss_pred EEecCCHHHHHHHHHHHHHhcCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy755 124 FMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLG 181 (183)
Q Consensus 124 ~~~~g~~~~~~~~~~l~~~~g~~~~~~g~~g~a~~~k~~~~~~~~~~~~~~~E~~~~~ 181 (183)
+-+..+.+.-..+..+|+.--.+++...+...-+.+-.+.|....+ +++++++.++
T Consensus 188 Ig~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAia--aGfvdGL~~g 243 (372)
T KOG2711|consen 188 IGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEICGALKNVVAIA--AGFVDGLGLG 243 (372)
T ss_pred EeccchhhcchHHHHHhCCCceEEEEeccchHhHHhhhHHhHHHHh--hhhhhhccCC
Confidence 3222333433458888888888888888877788888888887766 7777777665
No 142
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.13 E-value=2.1e-05 Score=60.17 Aligned_cols=97 Identities=24% Similarity=0.364 Sum_probs=67.8
Q ss_pred CcHHHHHHHHhC--CCc-EEEEcCCchhHHHHHHc-CCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCC
Q psy755 1 MGSHMARNLLKN--GHD-VIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 76 (183)
Q Consensus 1 mG~~iA~~l~~~--g~~-V~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~ 76 (183)
||..+++.|.+. +++ +.+||+++++.+.+.+. +...+++.++++.++|+|++|+|... ..... . ..+..
T Consensus 12 iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~-~~~~~---~---~al~~ 84 (265)
T PRK13304 12 IASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNA-VEEVV---P---KSLEN 84 (265)
T ss_pred HHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHH-HHHHH---H---HHHHc
Confidence 688899988876 355 45689999988877654 55667788998899999999998644 44443 2 34456
Q ss_pred CcEEEeccCC---CchhHHHHHHHHHhcCCc
Q psy755 77 GVIVIDSSTV---DPQVPQTLSNLAREKQIT 104 (183)
Q Consensus 77 ~~iiid~s~~---~~~~~~~~~~~~~~~g~~ 104 (183)
|+.++..|.. .+...+.+.+..++.|..
T Consensus 85 Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~ 115 (265)
T PRK13304 85 GKDVIIMSVGALADKELFLKLYKLAKENNCK 115 (265)
T ss_pred CCCEEEEchHHhcCHHHHHHHHHHHHHcCCE
Confidence 6666665542 344556777777777754
No 143
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.06 E-value=6.8e-06 Score=57.26 Aligned_cols=92 Identities=17% Similarity=0.251 Sum_probs=66.7
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccC--------------CHHHHhccCCEEEEecCChHHHHHHhcC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMAL--------------SLSTLASGAEFIISMLPASQDVLDAYDG 66 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~--------------~~~~~~~~adiVi~~vp~~~~~~~v~~~ 66 (183)
||.-+|..|.+.|++|.+++|++ ..+.+.+.|..... +..+....+|+||+|++.. +.+.++
T Consensus 9 iG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~-~~~~~l-- 84 (151)
T PF02558_consen 9 IGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAY-QLEQAL-- 84 (151)
T ss_dssp HHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGG-GHHHHH--
T ss_pred HHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEeccc-chHHHH--
Confidence 58899999999999999999999 78877776532211 1224567899999999874 466666
Q ss_pred CccccccCCCCcEEEeccCCCchhHHHHHHHH
Q psy755 67 SDGILKHAKPGVIVIDSSTVDPQVPQTLSNLA 98 (183)
Q Consensus 67 ~~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~ 98 (183)
+.+.+.+.+++.|+-.-+..... +.+.+.+
T Consensus 85 -~~l~~~~~~~t~iv~~qNG~g~~-~~l~~~~ 114 (151)
T PF02558_consen 85 -QSLKPYLDPNTTIVSLQNGMGNE-EVLAEYF 114 (151)
T ss_dssp -HHHCTGEETTEEEEEESSSSSHH-HHHHCHS
T ss_pred -HHHhhccCCCcEEEEEeCCCCcH-HHHHHHc
Confidence 78999999998888777765443 3344333
No 144
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.05 E-value=1.3e-05 Score=61.32 Aligned_cols=64 Identities=23% Similarity=0.322 Sum_probs=52.1
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
||..||..|.+.|++|++|.. .+.++++.+++||+||.+++.+..++.. ++++|.++
T Consensus 170 vG~Pla~lL~~~gatVtv~~s--------------~t~~l~~~~~~ADIVI~avg~~~~v~~~---------~ik~GavV 226 (284)
T PRK14179 170 VGKPMAQLLLDKNATVTLTHS--------------RTRNLAEVARKADILVVAIGRGHFVTKE---------FVKEGAVV 226 (284)
T ss_pred CcHHHHHHHHHCCCEEEEECC--------------CCCCHHHHHhhCCEEEEecCccccCCHH---------HccCCcEE
Confidence 799999999999999999931 1226888899999999999997754443 47899999
Q ss_pred EeccCCC
Q psy755 81 IDSSTVD 87 (183)
Q Consensus 81 id~s~~~ 87 (183)
||++...
T Consensus 227 IDvgin~ 233 (284)
T PRK14179 227 IDVGMNR 233 (284)
T ss_pred EEeccee
Confidence 9998543
No 145
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.96 E-value=3e-05 Score=54.43 Aligned_cols=82 Identities=18% Similarity=0.275 Sum_probs=58.2
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEE
Q psy755 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVI 81 (183)
Q Consensus 2 G~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iii 81 (183)
|+.+|+.|...|.+|.+++++|-+.-.+.-.|.... ++++++..+|++|.++.....+. .+..+.++.|.++.
T Consensus 35 G~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~-~~~~a~~~adi~vtaTG~~~vi~------~e~~~~mkdgail~ 107 (162)
T PF00670_consen 35 GKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVM-TLEEALRDADIFVTATGNKDVIT------GEHFRQMKDGAILA 107 (162)
T ss_dssp HHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE--HHHHTTT-SEEEE-SSSSSSB-------HHHHHHS-TTEEEE
T ss_pred cHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEec-CHHHHHhhCCEEEECCCCccccC------HHHHHHhcCCeEEe
Confidence 889999999999999999999987766666787655 78999999999999886533111 23346788999999
Q ss_pred eccCCCchh
Q psy755 82 DSSTVDPQV 90 (183)
Q Consensus 82 d~s~~~~~~ 90 (183)
+.+....+.
T Consensus 108 n~Gh~d~Ei 116 (162)
T PF00670_consen 108 NAGHFDVEI 116 (162)
T ss_dssp ESSSSTTSB
T ss_pred ccCcCceeE
Confidence 988765554
No 146
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.95 E-value=0.0001 Score=59.40 Aligned_cols=92 Identities=20% Similarity=0.198 Sum_probs=69.3
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
+|..+|+.+...|.+|+++|+++.+...+...|.... +++++++.+|+||.++.....+.. .....+++|.++
T Consensus 206 IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal~~aDVVItaTG~~~vI~~------~~~~~mK~Gail 278 (406)
T TIGR00936 206 CGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKIGDIFITATGNKDVIRG------EHFENMKDGAIV 278 (406)
T ss_pred HHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHHhcCCEEEECCCCHHHHHH------HHHhcCCCCcEE
Confidence 4889999999999999999999987666666675443 567888999999998865443322 245678899999
Q ss_pred EeccCCCc-hhHHHHHHHHH
Q psy755 81 IDSSTVDP-QVPQTLSNLAR 99 (183)
Q Consensus 81 id~s~~~~-~~~~~~~~~~~ 99 (183)
++.+.... .+...+.+...
T Consensus 279 iN~G~~~~eId~~aL~~~~~ 298 (406)
T TIGR00936 279 ANIGHFDVEIDVKALEELAV 298 (406)
T ss_pred EEECCCCceeCHHHHHHHHh
Confidence 99998765 56666665443
No 147
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=97.94 E-value=2.4e-05 Score=51.38 Aligned_cols=81 Identities=20% Similarity=0.266 Sum_probs=57.5
Q ss_pred HHHHHHHHhCCCcEEEEcCCchhHHHHH---HcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcE
Q psy755 3 SHMARNLLKNGHDVIVYDKNTDASQTLA---KEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 79 (183)
Q Consensus 3 ~~iA~~l~~~g~~V~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~i 79 (183)
..|++.|.+.|.+|.+||..-....... ..+....+++.+.++++|.||++++.++- +.+-+ +++...+.++.+
T Consensus 20 ~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~~f-~~l~~--~~~~~~~~~~~~ 96 (106)
T PF03720_consen 20 LELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHDEF-RELDW--EEIAKLMRKPPV 96 (106)
T ss_dssp HHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--GGG-GCCGH--HHHHHHSCSSEE
T ss_pred HHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCHHH-hccCH--HHHHHhcCCCCE
Confidence 4678899999999999997766544433 24677788999999999999999987553 33110 455666778999
Q ss_pred EEeccCC
Q psy755 80 VIDSSTV 86 (183)
Q Consensus 80 iid~s~~ 86 (183)
|+|+-+.
T Consensus 97 iiD~~~~ 103 (106)
T PF03720_consen 97 IIDGRNI 103 (106)
T ss_dssp EEESSST
T ss_pred EEECccc
Confidence 9998765
No 148
>KOG3124|consensus
Probab=97.89 E-value=0.00037 Score=52.15 Aligned_cols=137 Identities=11% Similarity=0.192 Sum_probs=92.8
Q ss_pred CcHHHHHHHHhCCC----cEEEEcCCchhHHH-HHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCC
Q psy755 1 MGSHMARNLLKNGH----DVIVYDKNTDASQT-LAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAK 75 (183)
Q Consensus 1 mG~~iA~~l~~~g~----~V~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~ 75 (183)
|..++++.+.+.|. +++.+..+...... +.+.|.....+..+..+.+|++++++.+ +.+..++ .++.+.+.
T Consensus 11 ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~svKp-~~i~~vl---s~~~~~~~ 86 (267)
T KOG3124|consen 11 MAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSVKP-QVIESVL---SEIKPKVS 86 (267)
T ss_pred hHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHHhhccceeEeecc-hhHHHHh---hcCccccc
Confidence 44567777777775 57777664444444 6777887777778889999999999965 8888887 77887788
Q ss_pred CCcEEEeccCCCchhHHHHHHHHHhcCCcEEeecccCCHHHHhcCceEEEec--CCHHHHHHHHHHHHHhcC
Q psy755 76 PGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVG--GDKSSLEKAKPILKCMGR 145 (183)
Q Consensus 76 ~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~l~~~~g~ 145 (183)
.+++|+.+-...... .+.+.+. -..+++ .-|..+|....++..++..+ ...++.+.+++++...|.
T Consensus 87 ~~~iivS~aaG~tl~--~l~~~l~-~~~rvi-RvmpNtp~~v~eg~sv~~~g~~~~~~D~~l~~~ll~~vG~ 154 (267)
T KOG3124|consen 87 KGKIIVSVAAGKTLS--SLESKLS-PPTRVI-RVMPNTPSVVGEGASVYAIGCHATNEDLELVEELLSAVGL 154 (267)
T ss_pred cceEEEEEeecccHH--HHHHhcC-CCCceE-EecCCChhhhhcCcEEEeeCCCcchhhHHHHHHHHHhcCc
Confidence 999998766554443 3344433 112222 23556677777776544333 244666889999999996
No 149
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.86 E-value=3.9e-05 Score=60.38 Aligned_cols=72 Identities=13% Similarity=0.194 Sum_probs=54.6
Q ss_pred hCCCcEEEEcCCchhHHHHHHc----C--CcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEecc
Q psy755 11 KNGHDVIVYDKNTDASQTLAKE----G--ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSS 84 (183)
Q Consensus 11 ~~g~~V~~~~~~~~~~~~~~~~----g--~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s 84 (183)
....+|++|||++++.+.+.+. + +..+++.++++++||+|+.|+|...+ ++ . .+++++|.+|...+
T Consensus 151 ~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~P---~~---~--~~~l~~g~~v~~vG 222 (325)
T TIGR02371 151 FDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRKP---VV---K--ADWVSEGTHINAIG 222 (325)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCCc---Ee---c--HHHcCCCCEEEecC
Confidence 3345899999999998776542 4 34578999999999999999988543 22 1 34678999998888
Q ss_pred CCCchh
Q psy755 85 TVDPQV 90 (183)
Q Consensus 85 ~~~~~~ 90 (183)
+..|..
T Consensus 223 s~~p~~ 228 (325)
T TIGR02371 223 ADAPGK 228 (325)
T ss_pred CCCccc
Confidence 877754
No 150
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.85 E-value=7.3e-06 Score=56.25 Aligned_cols=80 Identities=21% Similarity=0.286 Sum_probs=55.3
Q ss_pred CcHHHHHHHHhCCCc-EEEEcCCchhHHHHHHcC------CcccCCHHHHhccCCEEEEecCChHHHHHHhcCCcccccc
Q psy755 1 MGSHMARNLLKNGHD-VIVYDKNTDASQTLAKEG------ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKH 73 (183)
Q Consensus 1 mG~~iA~~l~~~g~~-V~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~ 73 (183)
||++++..|.+.|.+ |++++|+.++++.+.+.- ....+++.+.+.++|+||.|+|.+.. .+ .++..+.
T Consensus 23 ~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~---~i--~~~~~~~ 97 (135)
T PF01488_consen 23 AARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP---II--TEEMLKK 97 (135)
T ss_dssp HHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST---SS--THHHHTT
T ss_pred HHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc---cc--CHHHHHH
Confidence 578999999999996 999999999988887651 22355667778899999999998754 11 0222222
Q ss_pred CCCC-cEEEeccC
Q psy755 74 AKPG-VIVIDSST 85 (183)
Q Consensus 74 l~~~-~iiid~s~ 85 (183)
..+. ++++|.+.
T Consensus 98 ~~~~~~~v~Dla~ 110 (135)
T PF01488_consen 98 ASKKLRLVIDLAV 110 (135)
T ss_dssp TCHHCSEEEES-S
T ss_pred HHhhhhceecccc
Confidence 2121 48999973
No 151
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=97.81 E-value=7.9e-05 Score=60.92 Aligned_cols=80 Identities=20% Similarity=0.244 Sum_probs=62.3
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
+|+.+|+.+...|.+|+++++++.+...+...|... .+++++++.+|+|++++.. +.++ ..+..+.+++|.++
T Consensus 265 IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leell~~ADIVI~atGt----~~iI--~~e~~~~MKpGAiL 337 (476)
T PTZ00075 265 VGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDVVETADIFVTATGN----KDII--TLEHMRRMKNNAIV 337 (476)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHHHhcCCEEEECCCc----cccc--CHHHHhccCCCcEE
Confidence 589999999999999999999988765555556543 3788899999999999753 2333 13456778999999
Q ss_pred EeccCCC
Q psy755 81 IDSSTVD 87 (183)
Q Consensus 81 id~s~~~ 87 (183)
+|.+...
T Consensus 338 INvGr~d 344 (476)
T PTZ00075 338 GNIGHFD 344 (476)
T ss_pred EEcCCCc
Confidence 9998874
No 152
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.81 E-value=4.6e-05 Score=59.62 Aligned_cols=81 Identities=23% Similarity=0.352 Sum_probs=56.7
Q ss_pred CcHHHHHHHHhCC-CcEEEEcCCchhHHHHHHc-CCcc--cCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccC-C
Q psy755 1 MGSHMARNLLKNG-HDVIVYDKNTDASQTLAKE-GANM--ALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHA-K 75 (183)
Q Consensus 1 mG~~iA~~l~~~g-~~V~~~~~~~~~~~~~~~~-g~~~--~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l-~ 75 (183)
||..+++.|...| .+|++++|++++.+.+.+. |... .++..+.+..+|+||.++|.+.. ..++ ....+.. .
T Consensus 189 iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~~---~~~~~~~~~ 264 (311)
T cd05213 189 MGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKIV---ERAMKKRSG 264 (311)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHHH---HHHHhhCCC
Confidence 6888889888866 5899999999987666554 4422 23456778899999999998765 3322 2222222 3
Q ss_pred CCcEEEeccC
Q psy755 76 PGVIVIDSST 85 (183)
Q Consensus 76 ~~~iiid~s~ 85 (183)
++.+++|.+.
T Consensus 265 ~~~~viDlav 274 (311)
T cd05213 265 KPRLIVDLAV 274 (311)
T ss_pred CCeEEEEeCC
Confidence 6789999994
No 153
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.81 E-value=0.00012 Score=57.14 Aligned_cols=97 Identities=11% Similarity=0.248 Sum_probs=67.0
Q ss_pred CcHHHHHHHHh-CCC-cEEEEcCCchhHHHHHHc----CCcc-cCCHHHHhccCCEEEEecCChHHHHHHhcCCcccccc
Q psy755 1 MGSHMARNLLK-NGH-DVIVYDKNTDASQTLAKE----GANM-ALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKH 73 (183)
Q Consensus 1 mG~~iA~~l~~-~g~-~V~~~~~~~~~~~~~~~~----g~~~-~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~ 73 (183)
||...+..+.. .+. +|.+|+|++++.+++.+. +... .++.++++.++|+|+.|+|.+.+ ++ + ..
T Consensus 136 qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~P---l~---~---~~ 206 (304)
T PRK07340 136 QARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRTP---VY---P---EA 206 (304)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCCc---ee---C---cc
Confidence 35666777654 454 799999999988877654 2222 46788899999999999998653 33 2 24
Q ss_pred CCCCcEEEeccCCCchhHHHHHHHHHhcCCcEEe
Q psy755 74 AKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 107 (183)
Q Consensus 74 l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~ 107 (183)
+++|++|+..++..|..-+--.+.+... .-|+|
T Consensus 207 ~~~g~hi~~iGs~~p~~~El~~~~~~~a-~v~vD 239 (304)
T PRK07340 207 ARAGRLVVAVGAFTPDMAELAPRTVRGS-RLYVD 239 (304)
T ss_pred CCCCCEEEecCCCCCCcccCCHHHHhhC-eEEEc
Confidence 7899999999988876544333444433 34556
No 154
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.80 E-value=0.0001 Score=60.92 Aligned_cols=92 Identities=21% Similarity=0.358 Sum_probs=65.9
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHc-CCcc--cCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKE-GANM--ALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPG 77 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~-g~~~--~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~ 77 (183)
||++++..|.+.|++|++++|++++.+.+.+. +... ..+..+ +.++|+||.|+|.+..+... +.
T Consensus 343 iG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~-l~~~DiVInatP~g~~~~~~----------l~-- 409 (477)
T PRK09310 343 AAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPE-LHRIDIIINCLPPSVTIPKA----------FP-- 409 (477)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcc-cCCCCEEEEcCCCCCcchhH----------Hh--
Confidence 58999999999999999999999888776554 2111 122222 46899999999987643221 11
Q ss_pred cEEEeccCCCchhHHHHHHHHHhcCCcEEe
Q psy755 78 VIVIDSSTVDPQVPQTLSNLAREKQITFLD 107 (183)
Q Consensus 78 ~iiid~s~~~~~~~~~~~~~~~~~g~~~~~ 107 (183)
.+++|+....+.+. +.+.++++|++.++
T Consensus 410 ~~v~D~~Y~P~~T~--ll~~A~~~G~~~~~ 437 (477)
T PRK09310 410 PCVVDINTLPKHSP--YTQYARSQGSSIIY 437 (477)
T ss_pred hhEEeccCCCCCCH--HHHHHHHCcCEEEC
Confidence 38899998776665 56777778888777
No 155
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.79 E-value=5.5e-05 Score=50.83 Aligned_cols=83 Identities=22% Similarity=0.286 Sum_probs=50.4
Q ss_pred cHHHHHHHHhC-CCcEEEE-cCCchhHHHHHHcC--C--c-c-cCCHHHH-hccCCEEEEecCChHHHHHHhcCCccccc
Q psy755 2 GSHMARNLLKN-GHDVIVY-DKNTDASQTLAKEG--A--N-M-ALSLSTL-ASGAEFIISMLPASQDVLDAYDGSDGILK 72 (183)
Q Consensus 2 G~~iA~~l~~~-g~~V~~~-~~~~~~~~~~~~~g--~--~-~-~~~~~~~-~~~adiVi~~vp~~~~~~~v~~~~~~l~~ 72 (183)
|..++..|.+. ++++... +++.++.+.+...+ + . . ..+..++ ..++|+||+|+|+....+.+ ..+.+
T Consensus 12 g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~~~----~~~~~ 87 (122)
T smart00859 12 GQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKEIA----PLLPK 87 (122)
T ss_pred HHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHHHH----HHHHh
Confidence 55677777774 7777765 65544433433322 1 1 0 1111121 25899999999997655544 34455
Q ss_pred cCCCCcEEEeccCCCc
Q psy755 73 HAKPGVIVIDSSTVDP 88 (183)
Q Consensus 73 ~l~~~~iiid~s~~~~ 88 (183)
.+.+|+++||+|+...
T Consensus 88 ~~~~g~~viD~s~~~~ 103 (122)
T smart00859 88 AAEAGVKVIDLSSAFR 103 (122)
T ss_pred hhcCCCEEEECCcccc
Confidence 6789999999998654
No 156
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.78 E-value=0.00018 Score=58.36 Aligned_cols=81 Identities=17% Similarity=0.242 Sum_probs=63.3
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
+|+.+|..+...|.+|+++|+++.+...+...|... .++.++++.+|+||.++.....+. ......+++|.++
T Consensus 223 IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~eal~~aDVVI~aTG~~~vI~------~~~~~~mK~Gail 295 (425)
T PRK05476 223 VGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRV-MTMEEAAELGDIFVTATGNKDVIT------AEHMEAMKDGAIL 295 (425)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEe-cCHHHHHhCCCEEEECCCCHHHHH------HHHHhcCCCCCEE
Confidence 588999999999999999999998876666666553 367888999999999986543332 2345678899999
Q ss_pred EeccCCCc
Q psy755 81 IDSSTVDP 88 (183)
Q Consensus 81 id~s~~~~ 88 (183)
++.+....
T Consensus 296 iNvG~~d~ 303 (425)
T PRK05476 296 ANIGHFDN 303 (425)
T ss_pred EEcCCCCC
Confidence 99887654
No 157
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.71 E-value=0.00012 Score=57.33 Aligned_cols=86 Identities=16% Similarity=0.300 Sum_probs=60.3
Q ss_pred CcEEEEcCCchhHHHHHHc----CC--cccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEeccCCC
Q psy755 14 HDVIVYDKNTDASQTLAKE----GA--NMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVD 87 (183)
Q Consensus 14 ~~V~~~~~~~~~~~~~~~~----g~--~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~ 87 (183)
-+|++|+|++++.+.+.+. +. ..+++.++++++||+|+.+++...+ ++ + .+++++|.+|+..++..
T Consensus 154 ~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~~P---~~---~--~~~l~~G~hi~~iGs~~ 225 (315)
T PRK06823 154 RQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSREP---LL---Q--AEDIQPGTHITAVGADS 225 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCCCc---ee---C--HHHcCCCcEEEecCCCC
Confidence 3899999999998776542 33 3467899999999999999987653 22 1 24678999999888887
Q ss_pred chhHHHHHHHHHhcCCcEEe
Q psy755 88 PQVPQTLSNLAREKQITFLD 107 (183)
Q Consensus 88 ~~~~~~~~~~~~~~g~~~~~ 107 (183)
|...+--.+.+.+...-++|
T Consensus 226 p~~~Eld~~~l~~a~~vvvD 245 (315)
T PRK06823 226 PGKQELDAELVARADKILVD 245 (315)
T ss_pred cccccCCHHHHhhCCEEEEC
Confidence 76543333444433334555
No 158
>PLN02494 adenosylhomocysteinase
Probab=97.70 E-value=0.00027 Score=57.77 Aligned_cols=90 Identities=17% Similarity=0.198 Sum_probs=67.3
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
+|+.+|+.+...|.+|+++++++.+...+...|.... ++.++++.+|+||.+......+. .+..+.+++|.++
T Consensus 265 IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tTGt~~vI~------~e~L~~MK~GAiL 337 (477)
T PLN02494 265 VGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVSEADIFVTTTGNKDIIM------VDHMRKMKNNAIV 337 (477)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECCCCccchH------HHHHhcCCCCCEE
Confidence 5899999999999999999999987666666665543 67888999999999776533221 3335678999999
Q ss_pred EeccCC-CchhHHHHHHH
Q psy755 81 IDSSTV-DPQVPQTLSNL 97 (183)
Q Consensus 81 id~s~~-~~~~~~~~~~~ 97 (183)
++.+.. ...+..++.+.
T Consensus 338 iNvGr~~~eID~~aL~~~ 355 (477)
T PLN02494 338 CNIGHFDNEIDMLGLETY 355 (477)
T ss_pred EEcCCCCCccCHHHHhhc
Confidence 999984 45555555554
No 159
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.70 E-value=0.00012 Score=57.08 Aligned_cols=85 Identities=15% Similarity=0.178 Sum_probs=60.3
Q ss_pred cEEEEcCCchhHHHHHHc-----C--CcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEeccCCC
Q psy755 15 DVIVYDKNTDASQTLAKE-----G--ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVD 87 (183)
Q Consensus 15 ~V~~~~~~~~~~~~~~~~-----g--~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~ 87 (183)
+|.+|+|++++.+++.+. | +..++++++++.+||+|+.+++..++ ++. ..++++|.+|.-.++..
T Consensus 144 ~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~P---~~~-----~~~l~pg~hV~aiGs~~ 215 (301)
T PRK06407 144 RIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDTP---IFN-----RKYLGDEYHVNLAGSNY 215 (301)
T ss_pred EEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCCc---Eec-----HHHcCCCceEEecCCCC
Confidence 799999999998876543 3 34567899999999999999988653 221 24678899998888877
Q ss_pred chhHHHHHHHHHhcCCcEEe
Q psy755 88 PQVPQTLSNLAREKQITFLD 107 (183)
Q Consensus 88 ~~~~~~~~~~~~~~g~~~~~ 107 (183)
|...+--.+.+.....-++|
T Consensus 216 p~~~El~~~~l~~a~~v~vD 235 (301)
T PRK06407 216 PNRREAEHSVLNDADIVVTE 235 (301)
T ss_pred CCcccCCHHHHHhCCEEEEC
Confidence 76543333444443334555
No 160
>KOG0068|consensus
Probab=97.70 E-value=0.00022 Score=55.48 Aligned_cols=96 Identities=23% Similarity=0.259 Sum_probs=79.7
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
+|+.+|.++...|..|+.||.-.. .+++.+.|++.. +++|+...||.|-+.+|-..++++++. ++....+++|..|
T Consensus 157 IGseVA~r~k~~gm~vI~~dpi~~-~~~~~a~gvq~v-sl~Eil~~ADFitlH~PLtP~T~~lin--~~tfA~mKkGVri 232 (406)
T KOG0068|consen 157 IGSEVAVRAKAMGMHVIGYDPITP-MALAEAFGVQLV-SLEEILPKADFITLHVPLTPSTEKLLN--DETFAKMKKGVRI 232 (406)
T ss_pred chHHHHHHHHhcCceEEeecCCCc-hHHHHhccceee-eHHHHHhhcCEEEEccCCCcchhhccC--HHHHHHhhCCcEE
Confidence 689999999999999999874332 245566687776 999999999999999999999999884 5667789999999
Q ss_pred EeccCCCchhHHHHHHHHHh
Q psy755 81 IDSSTVDPQVPQTLSNLARE 100 (183)
Q Consensus 81 id~s~~~~~~~~~~~~~~~~ 100 (183)
|+++.....+..++.+.+..
T Consensus 233 IN~aRGGvVDe~ALv~Al~s 252 (406)
T KOG0068|consen 233 INVARGGVVDEPALVRALDS 252 (406)
T ss_pred EEecCCceechHHHHHHHhc
Confidence 99999988888888877664
No 161
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=0.0013 Score=48.59 Aligned_cols=140 Identities=16% Similarity=0.151 Sum_probs=86.0
Q ss_pred HHHH-HHhCCCcEEE----EcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcE
Q psy755 5 MARN-LLKNGHDVIV----YDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 79 (183)
Q Consensus 5 iA~~-l~~~g~~V~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~i 79 (183)
+++. |.+.-+.++- ..||+++.+.+.+--+-...+.+...+-.++||..+|+. .+..+. ......+|++
T Consensus 21 l~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~~a~p~d~~~~ael~~~vfv~vpd~-~~s~va-----a~~~~rpg~i 94 (289)
T COG5495 21 LGRAALLRADHVVVACSAISSRSRDRAQNLAETYVAPPLDVAKSAELLLLVFVDVPDA-LYSGVA-----ATSLNRPGTI 94 (289)
T ss_pred HHHHHHHHhcchheeehhhhhcCHHHHhhchhccCCCccchhhChhhhceEEecchHH-HHHHHH-----HhcccCCCeE
Confidence 3344 4555554433 257777777655442222334555556688999999885 333332 2345679999
Q ss_pred EEeccCCCchhHHHHHHHHHhcCCcEEe-ec--cc-CCHHHHh--cCceEEEecCCHHHHHHHHHHHHHhcCCeEEeCCc
Q psy755 80 VIDSSTVDPQVPQTLSNLAREKQITFLD-AP--VS-GGTKAAQ--EATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDS 153 (183)
Q Consensus 80 iid~s~~~~~~~~~~~~~~~~~g~~~~~-~~--~~-~~~~~~~--~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~g~~ 153 (183)
+++||........ ..+.+.|..... || ++ |.+.... .++.+.++.+++.-...++.+...+|.+++.+-+.
T Consensus 95 v~HcSga~~~~il---~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~ai~q~la~emgg~~f~V~~~ 171 (289)
T COG5495 95 VAHCSGANGSGIL---APLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYAIVQSLALEMGGEPFCVREE 171 (289)
T ss_pred EEEccCCCchhhh---hhhhhcCCcceeecccccccCCHHHHHhCcccEEEeecccccccHHHHHHHHHhCCCceeechh
Confidence 9999988776643 333444433222 33 33 3344333 35555566888888889999999999988776653
No 162
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.68 E-value=0.00019 Score=54.96 Aligned_cols=76 Identities=22% Similarity=0.341 Sum_probs=61.5
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchh-HHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 2 GSHMARNLLKNGHDVIVYDKNTDA-SQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 2 G~~iA~~l~~~g~~V~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
|.+=|.+|...|.+|++--|...+ .+++.+.|.... +..|+++.+|+|++.+|+.+ -+.++. +++.|.|++|+.+
T Consensus 30 G~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~-~v~ea~k~ADvim~L~PDe~-q~~vy~--~~I~p~Lk~G~aL 105 (338)
T COG0059 30 GHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVY-TVEEAAKRADVVMILLPDEQ-QKEVYE--KEIAPNLKEGAAL 105 (338)
T ss_pred HHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEee-cHHHHhhcCCEEEEeCchhh-HHHHHH--HHhhhhhcCCceE
Confidence 567788999999999887666554 778888887755 99999999999999999955 456662 5899999999865
Q ss_pred E
Q psy755 81 I 81 (183)
Q Consensus 81 i 81 (183)
.
T Consensus 106 ~ 106 (338)
T COG0059 106 G 106 (338)
T ss_pred E
Confidence 3
No 163
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.66 E-value=0.00029 Score=56.96 Aligned_cols=79 Identities=18% Similarity=0.256 Sum_probs=62.7
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
+|..+++.+...|.+|+++|+++.+.+.+...|.... +.++.+..+|+||.++..+..+.. ...+.+++|.++
T Consensus 213 IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG~~~~i~~------~~l~~mk~Ggil 285 (413)
T cd00401 213 VGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTGNKDIITG------EHFEQMKDGAIV 285 (413)
T ss_pred HHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCCCHHHHHH------HHHhcCCCCcEE
Confidence 5888999999999999999999999888888887443 567788899999999866443332 235678899999
Q ss_pred EeccCC
Q psy755 81 IDSSTV 86 (183)
Q Consensus 81 id~s~~ 86 (183)
++.+..
T Consensus 286 vnvG~~ 291 (413)
T cd00401 286 CNIGHF 291 (413)
T ss_pred EEeCCC
Confidence 988854
No 164
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.66 E-value=0.00014 Score=55.97 Aligned_cols=103 Identities=20% Similarity=0.233 Sum_probs=68.5
Q ss_pred CcHHHHHHHHhCC-CcEEEEcCCchhHHHHHHc-C----CcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccC
Q psy755 1 MGSHMARNLLKNG-HDVIVYDKNTDASQTLAKE-G----ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHA 74 (183)
Q Consensus 1 mG~~iA~~l~~~g-~~V~~~~~~~~~~~~~~~~-g----~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l 74 (183)
+|++++..|...| .+|++++|+.++.+.+.+. + +....+..+.+..+|+||.++|.+..-..-. ..-....+
T Consensus 134 ~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~~~~~--~~~~~~~l 211 (278)
T PRK00258 134 AARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMSGELPL--PPLPLSLL 211 (278)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCCCCCCC--CCCCHHHc
Confidence 4788999999999 5899999999988777654 1 1111133456688999999998764210000 01112356
Q ss_pred CCCcEEEeccCCCchhHHHHHHHHHhcCCcEEe
Q psy755 75 KPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 107 (183)
Q Consensus 75 ~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~ 107 (183)
+++.+++|..-....+ .+.+..+++|.+.++
T Consensus 212 ~~~~~v~DivY~P~~T--~ll~~A~~~G~~~~~ 242 (278)
T PRK00258 212 RPGTIVYDMIYGPLPT--PFLAWAKAQGARTID 242 (278)
T ss_pred CCCCEEEEeecCCCCC--HHHHHHHHCcCeecC
Confidence 7889999998744333 455666777877766
No 165
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.61 E-value=0.00015 Score=56.95 Aligned_cols=86 Identities=17% Similarity=0.330 Sum_probs=64.8
Q ss_pred CcEEEEcCCchhHHHHHHc----C---CcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEeccCC
Q psy755 14 HDVIVYDKNTDASQTLAKE----G---ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 86 (183)
Q Consensus 14 ~~V~~~~~~~~~~~~~~~~----g---~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~ 86 (183)
-+|.+|+|++++.+++... + +...++.++++++||+|+.|+|..++ ++. .+++++|.+|...++.
T Consensus 156 ~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~P---il~-----~~~l~~G~hI~aiGad 227 (330)
T COG2423 156 REIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTEP---VLK-----AEWLKPGTHINAIGAD 227 (330)
T ss_pred cEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCCC---eec-----HhhcCCCcEEEecCCC
Confidence 3899999999998887643 3 45678899999999999999998763 331 4578899999988887
Q ss_pred CchhHHHHHHHHHhcCCcEEe
Q psy755 87 DPQVPQTLSNLAREKQITFLD 107 (183)
Q Consensus 87 ~~~~~~~~~~~~~~~g~~~~~ 107 (183)
.|...+--.+.+.+.+.-++|
T Consensus 228 ~p~k~Eld~e~l~ra~~vvvD 248 (330)
T COG2423 228 APGKRELDPEVLARADRVVVD 248 (330)
T ss_pred CcccccCCHHHHHhcCeEEEc
Confidence 776655445555555566666
No 166
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.60 E-value=0.00026 Score=55.77 Aligned_cols=97 Identities=15% Similarity=0.226 Sum_probs=65.1
Q ss_pred cHHHHHHHHh-CCC-cEEEEcCCchhHHHHHHc-----CC--cccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccc
Q psy755 2 GSHMARNLLK-NGH-DVIVYDKNTDASQTLAKE-----GA--NMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 72 (183)
Q Consensus 2 G~~iA~~l~~-~g~-~V~~~~~~~~~~~~~~~~-----g~--~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~ 72 (183)
|+..+..+.. .+. +|.+|+|++++.+++.+. ++ ...++.++++.++|+|+.|+|.... ++ . .
T Consensus 139 a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~~p---~i---~---~ 209 (325)
T PRK08618 139 AKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAKTP---VF---S---E 209 (325)
T ss_pred HHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCCCc---ch---H---H
Confidence 4455555543 344 799999999998877652 33 3467888899999999999998642 32 2 5
Q ss_pred cCCCCcEEEeccCCCchhHHHHHHHHHhcCCcEEe
Q psy755 73 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 107 (183)
Q Consensus 73 ~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~ 107 (183)
.+++|++|+..++..|...+.-.+.+.+...-++|
T Consensus 210 ~l~~G~hV~~iGs~~p~~~E~~~~~~~~a~~vvvD 244 (325)
T PRK08618 210 KLKKGVHINAVGSFMPDMQELPSEAIARANKVVVE 244 (325)
T ss_pred hcCCCcEEEecCCCCcccccCCHHHHhhCCEEEEC
Confidence 67899999988887775543333334333333555
No 167
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.58 E-value=0.00016 Score=52.66 Aligned_cols=84 Identities=20% Similarity=0.325 Sum_probs=57.1
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHc-----CC--cc--c---CCHHHHhccCCEEEEecCChHHHHHHhcCCc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKE-----GA--NM--A---LSLSTLASGAEFIISMLPASQDVLDAYDGSD 68 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~-----g~--~~--~---~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~ 68 (183)
+|+.++..|++.|++|++++|+.++.+.+.+. +. .. . ++..+.++++|+||.++|.+.....
T Consensus 40 iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~~g~~~~~------ 113 (194)
T cd01078 40 VGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGAAGVELLE------ 113 (194)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCCCCceech------
Confidence 47789999999999999999999887766542 11 11 1 2234677899999999988763111
Q ss_pred cccccCCCCcEEEeccCCCchh
Q psy755 69 GILKHAKPGVIVIDSSTVDPQV 90 (183)
Q Consensus 69 ~l~~~l~~~~iiid~s~~~~~~ 90 (183)
.......++.+++|.....+..
T Consensus 114 ~~~~~~~~~~vv~D~~~~~~~~ 135 (194)
T cd01078 114 KLAWAPKPLAVAADVNAVPPVG 135 (194)
T ss_pred hhhcccCceeEEEEccCCCCCC
Confidence 1122344578999997665544
No 168
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.57 E-value=0.00023 Score=54.94 Aligned_cols=101 Identities=22% Similarity=0.265 Sum_probs=68.3
Q ss_pred CcHHHHHHHHhCCC-cEEEEcCCchhHHHHHHc-----C-C--cccCCHHHHhccCCEEEEecCChHHHHHHhcCCccc-
Q psy755 1 MGSHMARNLLKNGH-DVIVYDKNTDASQTLAKE-----G-A--NMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGI- 70 (183)
Q Consensus 1 mG~~iA~~l~~~g~-~V~~~~~~~~~~~~~~~~-----g-~--~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l- 70 (183)
+|++++..|++.|. +|+++||+.++++.+.+. . . ...++..+.+.++|+||.|+|.+..-..- .-+
T Consensus 138 aaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~----~~~~ 213 (284)
T PRK12549 138 AGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTGMAKHPG----LPLP 213 (284)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCCCCCCCC----CCCC
Confidence 37889999999998 799999999998877653 1 1 11234455678899999999875321000 011
Q ss_pred cccCCCCcEEEeccCCCchhHHHHHHHHHhcCCcEEe
Q psy755 71 LKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 107 (183)
Q Consensus 71 ~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~ 107 (183)
...++++.++.|..-....+ .+.+..+++|...++
T Consensus 214 ~~~l~~~~~v~DivY~P~~T--~ll~~A~~~G~~~~~ 248 (284)
T PRK12549 214 AELLRPGLWVADIVYFPLET--ELLRAARALGCRTLD 248 (284)
T ss_pred HHHcCCCcEEEEeeeCCCCC--HHHHHHHHCCCeEec
Confidence 13467788899998765544 455566777877766
No 169
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.55 E-value=0.00021 Score=56.30 Aligned_cols=80 Identities=16% Similarity=0.246 Sum_probs=57.8
Q ss_pred cHHHHHHHH-hCCC-cEEEEcCCchhHHHHHHc-----CC--cccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccc
Q psy755 2 GSHMARNLL-KNGH-DVIVYDKNTDASQTLAKE-----GA--NMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 72 (183)
Q Consensus 2 G~~iA~~l~-~~g~-~V~~~~~~~~~~~~~~~~-----g~--~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~ 72 (183)
|+..+..|. ..+. +|++|+|++++.+.+.+. ++ ...+++++++.++|+|+.|+|...+ ++ . .+
T Consensus 141 A~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~p---~i---~--~~ 212 (326)
T TIGR02992 141 ARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSETP---IL---H--AE 212 (326)
T ss_pred HHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCCc---Ee---c--HH
Confidence 556667775 3554 699999999998877653 43 3357888899999999999988553 22 1 23
Q ss_pred cCCCCcEEEeccCCCch
Q psy755 73 HAKPGVIVIDSSTVDPQ 89 (183)
Q Consensus 73 ~l~~~~iiid~s~~~~~ 89 (183)
.+++|.+|...++..|.
T Consensus 213 ~l~~g~~i~~vg~~~p~ 229 (326)
T TIGR02992 213 WLEPGQHVTAMGSDAEH 229 (326)
T ss_pred HcCCCcEEEeeCCCCCC
Confidence 57889998887766554
No 170
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.54 E-value=0.00089 Score=44.54 Aligned_cols=97 Identities=23% Similarity=0.361 Sum_probs=66.8
Q ss_pred cHHHHHHHHhC--CCcEE-EEcCCchhHHHHHHc-CCcccCCHHHHhc--cCCEEEEecCChHHHHHHhcCCccccccCC
Q psy755 2 GSHMARNLLKN--GHDVI-VYDKNTDASQTLAKE-GANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILKHAK 75 (183)
Q Consensus 2 G~~iA~~l~~~--g~~V~-~~~~~~~~~~~~~~~-g~~~~~~~~~~~~--~adiVi~~vp~~~~~~~v~~~~~~l~~~l~ 75 (183)
|+.....+.+. +.+++ ++|+++++.+.+.+. +...+++.+++++ +.|+|++++|...+.+.+ ...+.
T Consensus 12 g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~-------~~~l~ 84 (120)
T PF01408_consen 12 GRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIA-------KKALE 84 (120)
T ss_dssp HHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHH-------HHHHH
T ss_pred HHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHH-------HHHHH
Confidence 44455556655 44655 689999998886544 7778889999987 799999999997765555 34455
Q ss_pred CCcEEE-ecc-CCCchhHHHHHHHHHhcCCcE
Q psy755 76 PGVIVI-DSS-TVDPQVPQTLSNLAREKQITF 105 (183)
Q Consensus 76 ~~~iii-d~s-~~~~~~~~~~~~~~~~~g~~~ 105 (183)
.|+.|+ +-= .....+...+.+..++.|..+
T Consensus 85 ~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~ 116 (120)
T PF01408_consen 85 AGKHVLVEKPLALTLEEAEELVEAAKEKGVKV 116 (120)
T ss_dssp TTSEEEEESSSSSSHHHHHHHHHHHHHHTSCE
T ss_pred cCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEE
Confidence 666554 321 235666777777777777553
No 171
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.47 E-value=0.00016 Score=57.91 Aligned_cols=87 Identities=20% Similarity=0.314 Sum_probs=59.3
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHc-CCc---cc---CCHHHHhccCCEEEEecCChH-HHHHHhcCCccccc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKE-GAN---MA---LSLSTLASGAEFIISMLPASQ-DVLDAYDGSDGILK 72 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~-g~~---~~---~~~~~~~~~adiVi~~vp~~~-~~~~v~~~~~~l~~ 72 (183)
+|...++.+.+.|.+|+++||++++.+.+... +.. .. .++.+.++++|+||.+++.+. ....++ .++...
T Consensus 178 vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~p~li--t~~~l~ 255 (370)
T TIGR00518 178 VGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKAPKLV--SNSLVA 255 (370)
T ss_pred HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCCCCcCc--CHHHHh
Confidence 47788899999999999999999988777554 321 11 235567789999999984321 112222 144445
Q ss_pred cCCCCcEEEeccCCCch
Q psy755 73 HAKPGVIVIDSSTVDPQ 89 (183)
Q Consensus 73 ~l~~~~iiid~s~~~~~ 89 (183)
.++++.+|+|.+.....
T Consensus 256 ~mk~g~vIvDva~d~GG 272 (370)
T TIGR00518 256 QMKPGAVIVDVAIDQGG 272 (370)
T ss_pred cCCCCCEEEEEecCCCC
Confidence 67899999998854433
No 172
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.47 E-value=0.00011 Score=59.89 Aligned_cols=81 Identities=20% Similarity=0.341 Sum_probs=56.4
Q ss_pred CcHHHHHHHHhCCC-cEEEEcCCchhHHHHHHc-CCc--ccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccC--
Q psy755 1 MGSHMARNLLKNGH-DVIVYDKNTDASQTLAKE-GAN--MALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHA-- 74 (183)
Q Consensus 1 mG~~iA~~l~~~g~-~V~~~~~~~~~~~~~~~~-g~~--~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l-- 74 (183)
||..++..|...|. +|++++|++++.+.+.+. |.. ..++..+.+..+|+||.|++.+..+-.- +.+.+.+
T Consensus 193 iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~~~i~~----~~l~~~~~~ 268 (423)
T PRK00045 193 MGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPHPIIGK----GMVERALKA 268 (423)
T ss_pred HHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCCcEEcH----HHHHHHHhh
Confidence 68889999998997 799999999987766554 422 2245566788999999999876653211 2233322
Q ss_pred --CCCcEEEeccC
Q psy755 75 --KPGVIVIDSST 85 (183)
Q Consensus 75 --~~~~iiid~s~ 85 (183)
..+.+++|.+.
T Consensus 269 ~~~~~~vviDla~ 281 (423)
T PRK00045 269 RRHRPLLLVDLAV 281 (423)
T ss_pred ccCCCeEEEEeCC
Confidence 24568889874
No 173
>PLN00203 glutamyl-tRNA reductase
Probab=97.45 E-value=0.00018 Score=59.95 Aligned_cols=59 Identities=15% Similarity=0.318 Sum_probs=47.3
Q ss_pred CcHHHHHHHHhCCC-cEEEEcCCchhHHHHHHc--CC----cccCCHHHHhccCCEEEEecCChHH
Q psy755 1 MGSHMARNLLKNGH-DVIVYDKNTDASQTLAKE--GA----NMALSLSTLASGAEFIISMLPASQD 59 (183)
Q Consensus 1 mG~~iA~~l~~~g~-~V~~~~~~~~~~~~~~~~--g~----~~~~~~~~~~~~adiVi~~vp~~~~ 59 (183)
||..+++.|...|+ +|++++|+.++.+.+.+. +. ...++..+.+.++|+||.|++.+..
T Consensus 277 mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~~p 342 (519)
T PLN00203 277 MGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSETP 342 (519)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCCCC
Confidence 78899999999997 799999999998887764 22 1234667788999999999977654
No 174
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.42 E-value=0.0004 Score=54.79 Aligned_cols=81 Identities=16% Similarity=0.285 Sum_probs=55.8
Q ss_pred cHHHHHHHHh-CC-CcEEEEcCCchhHHHHHHc-----CCc--ccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccc
Q psy755 2 GSHMARNLLK-NG-HDVIVYDKNTDASQTLAKE-----GAN--MALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 72 (183)
Q Consensus 2 G~~iA~~l~~-~g-~~V~~~~~~~~~~~~~~~~-----g~~--~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~ 72 (183)
|+..+..+.. .+ .+|.+|+|++++.+.+.+. ++. ..+++++++.++|+|+.++|...+ ++ + ..
T Consensus 144 a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~~p---~i---~--~~ 215 (330)
T PRK08291 144 ARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSEEP---IL---K--AE 215 (330)
T ss_pred HHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCCCc---Ee---c--HH
Confidence 4555566664 34 4799999999998887653 332 357888999999999999988543 22 1 12
Q ss_pred cCCCCcEEEeccCCCchh
Q psy755 73 HAKPGVIVIDSSTVDPQV 90 (183)
Q Consensus 73 ~l~~~~iiid~s~~~~~~ 90 (183)
.+++|..|....+..|..
T Consensus 216 ~l~~g~~v~~vg~d~~~~ 233 (330)
T PRK08291 216 WLHPGLHVTAMGSDAEHK 233 (330)
T ss_pred HcCCCceEEeeCCCCCCc
Confidence 467888887766554433
No 175
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.37 E-value=0.0002 Score=56.12 Aligned_cols=70 Identities=21% Similarity=0.416 Sum_probs=45.2
Q ss_pred cEEEEcCCchhHHHHHHc----C--CcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEeccCCCc
Q psy755 15 DVIVYDKNTDASQTLAKE----G--ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDP 88 (183)
Q Consensus 15 ~V~~~~~~~~~~~~~~~~----g--~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~~ 88 (183)
+|.+|+|++++.+++.+. + +..+++.++++++||+|+.|+|..... .++ + ..++++|.+|+..++..|
T Consensus 155 ~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~-P~~---~--~~~l~~g~hi~~iGs~~~ 228 (313)
T PF02423_consen 155 EVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA-PVF---D--AEWLKPGTHINAIGSYTP 228 (313)
T ss_dssp EEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-ESB------GGGS-TT-EEEE-S-SST
T ss_pred EEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-ccc---c--HHHcCCCcEEEEecCCCC
Confidence 799999999988777653 3 345789999999999999999886510 222 1 347889999998888777
Q ss_pred hh
Q psy755 89 QV 90 (183)
Q Consensus 89 ~~ 90 (183)
..
T Consensus 229 ~~ 230 (313)
T PF02423_consen 229 GM 230 (313)
T ss_dssp TB
T ss_pred ch
Confidence 54
No 176
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.37 E-value=0.00016 Score=58.83 Aligned_cols=81 Identities=22% Similarity=0.421 Sum_probs=55.6
Q ss_pred CcHHHHHHHHhCC-CcEEEEcCCchhHHHHHHc-CC--cccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCC-
Q psy755 1 MGSHMARNLLKNG-HDVIVYDKNTDASQTLAKE-GA--NMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAK- 75 (183)
Q Consensus 1 mG~~iA~~l~~~g-~~V~~~~~~~~~~~~~~~~-g~--~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~- 75 (183)
||..+++.|...| .+|++++|++++.+.+.+. +. ...++..+.+.++|+||.|++.+..+-.- +.+.+.+.
T Consensus 191 iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~~ii~~----e~l~~~~~~ 266 (417)
T TIGR01035 191 MGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPHPIVSK----EDVERALRE 266 (417)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCCceEcH----HHHHHHHhc
Confidence 6888999999999 6899999999987766543 32 22345667788999999999876653111 22333222
Q ss_pred --CCcEEEeccC
Q psy755 76 --PGVIVIDSST 85 (183)
Q Consensus 76 --~~~iiid~s~ 85 (183)
.+.+++|.+.
T Consensus 267 ~~~~~~viDla~ 278 (417)
T TIGR01035 267 RTRPLFIIDIAV 278 (417)
T ss_pred CCCCeEEEEeCC
Confidence 2347889874
No 177
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.35 E-value=0.0052 Score=48.18 Aligned_cols=76 Identities=7% Similarity=0.138 Sum_probs=53.3
Q ss_pred CcHHHHHHHHhC-CCcEEE-EcCCc-hhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCC
Q psy755 1 MGSHMARNLLKN-GHDVIV-YDKNT-DASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPG 77 (183)
Q Consensus 1 mG~~iA~~l~~~-g~~V~~-~~~~~-~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~ 77 (183)
||+..+..+.+. ++++++ +|+++ ++.. ...++....+..+...+.|+|++|+|...+.+.+ .+.|..|
T Consensus 14 IGr~~a~al~~~pd~ELVgV~dr~~~~~~~--~~~~v~~~~d~~e~l~~iDVViIctPs~th~~~~-------~~~L~aG 84 (324)
T TIGR01921 14 LGRSVEKAIQQQPDMELVGVFSRRGAETLD--TETPVYAVADDEKHLDDVDVLILCMGSATDIPEQ-------APYFAQF 84 (324)
T ss_pred HHHHHHHHHHhCCCcEEEEEEcCCcHHHHh--hcCCccccCCHHHhccCCCEEEEcCCCccCHHHH-------HHHHHcC
Confidence 578888888765 678775 79986 4332 1124444456667778899999999986664444 4668899
Q ss_pred cEEEeccC
Q psy755 78 VIVIDSST 85 (183)
Q Consensus 78 ~iiid~s~ 85 (183)
..+|++.-
T Consensus 85 ~NVV~s~~ 92 (324)
T TIGR01921 85 ANTVDSFD 92 (324)
T ss_pred CCEEECCC
Confidence 99998854
No 178
>PRK06046 alanine dehydrogenase; Validated
Probab=97.35 E-value=0.00052 Score=54.05 Aligned_cols=96 Identities=13% Similarity=0.223 Sum_probs=63.5
Q ss_pred cHHHHHHHHhC-CC-cEEEEcCCchhHHHHHHc-----C--CcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccc
Q psy755 2 GSHMARNLLKN-GH-DVIVYDKNTDASQTLAKE-----G--ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 72 (183)
Q Consensus 2 G~~iA~~l~~~-g~-~V~~~~~~~~~~~~~~~~-----g--~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~ 72 (183)
|+..+..+... +. +|.+|||++++.+++.+. + +...++.+++++ +|+|++|+|...+ ++. .+
T Consensus 141 a~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~P---~~~-----~~ 211 (326)
T PRK06046 141 ARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRKP---VVK-----AE 211 (326)
T ss_pred HHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCCc---Eec-----HH
Confidence 45556666533 33 688999999988876653 3 234668888887 9999999998543 221 24
Q ss_pred cCCCCcEEEeccCCCchhHHHHHHHHHhcCCcEEe
Q psy755 73 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 107 (183)
Q Consensus 73 ~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~ 107 (183)
++++|++|...++..|...+--.+.+.. .-.|+|
T Consensus 212 ~l~~g~hV~~iGs~~p~~~El~~~~~~~-a~vvvD 245 (326)
T PRK06046 212 WIKEGTHINAIGADAPGKQELDPEILLR-AKVVVD 245 (326)
T ss_pred HcCCCCEEEecCCCCCccccCCHHHHhC-CcEEEC
Confidence 6789999998888877543333333332 234566
No 179
>PRK04148 hypothetical protein; Provisional
Probab=97.33 E-value=0.0026 Score=43.40 Aligned_cols=83 Identities=25% Similarity=0.227 Sum_probs=65.1
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCc-----ccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCC
Q psy755 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKEGAN-----MALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 76 (183)
Q Consensus 2 G~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~-----~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~ 76 (183)
|..+|..|.+.|++|++.|.+++.++.+.+.+.. ..+...++-+++|+|-..=|+++-.+.+ .++...+..
T Consensus 28 G~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~~~~----~~la~~~~~ 103 (134)
T PRK04148 28 YFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQPFI----LELAKKINV 103 (134)
T ss_pred CHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHHHHH----HHHHHHcCC
Confidence 4568999999999999999999999988777542 2233446678999999999987766666 577778888
Q ss_pred CcEEEeccCCCc
Q psy755 77 GVIVIDSSTVDP 88 (183)
Q Consensus 77 ~~iiid~s~~~~ 88 (183)
+.+|...|+-.|
T Consensus 104 ~~~i~~l~~e~~ 115 (134)
T PRK04148 104 PLIIKPLSGEEP 115 (134)
T ss_pred CEEEEcCCCCCC
Confidence 888887777554
No 180
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=97.33 E-value=0.0027 Score=41.98 Aligned_cols=97 Identities=16% Similarity=0.184 Sum_probs=61.6
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcc-cC---CHH---H-HhccCCEEEEecCChHHHHHHhcCCccccc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANM-AL---SLS---T-LASGAEFIISMLPASQDVLDAYDGSDGILK 72 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~-~~---~~~---~-~~~~adiVi~~vp~~~~~~~v~~~~~~l~~ 72 (183)
+|..+++.|.+.+.+|++.|++++.++.+.+.+... .. +.. + -+++++.|++++++...--.+. ..+..
T Consensus 9 ~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~~---~~~r~ 85 (116)
T PF02254_consen 9 IGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLIA---LLARE 85 (116)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHHH---HHHHH
Confidence 478899999997779999999999999999887422 11 121 1 1468999999998865444443 33333
Q ss_pred cCCCCcEEEeccCCCchhHHHHHHHHHhcCCcEE
Q psy755 73 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFL 106 (183)
Q Consensus 73 ~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~ 106 (183)
..+..++++-..+ ....+.+...|+..+
T Consensus 86 ~~~~~~ii~~~~~------~~~~~~l~~~g~d~v 113 (116)
T PF02254_consen 86 LNPDIRIIARVND------PENAELLRQAGADHV 113 (116)
T ss_dssp HTTTSEEEEEESS------HHHHHHHHHTT-SEE
T ss_pred HCCCCeEEEEECC------HHHHHHHHHCCcCEE
Confidence 3434455553333 233455555666544
No 181
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.30 E-value=0.00065 Score=54.66 Aligned_cols=107 Identities=26% Similarity=0.289 Sum_probs=71.2
Q ss_pred CcHHHHHHHHhCC-C-cEEEEcCCchhHHHHHHc----C-------CcccCCHHHHhccCCEEEEecCChHHHHHHhcCC
Q psy755 1 MGSHMARNLLKNG-H-DVIVYDKNTDASQTLAKE----G-------ANMALSLSTLASGAEFIISMLPASQDVLDAYDGS 67 (183)
Q Consensus 1 mG~~iA~~l~~~g-~-~V~~~~~~~~~~~~~~~~----g-------~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~ 67 (183)
||+.+++.|++.+ + +|++.||+.++++++.+. + +...+++.++++++|+||.|+|+. .-..++
T Consensus 9 vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-~~~~v~--- 84 (386)
T PF03435_consen 9 VGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-FGEPVA--- 84 (386)
T ss_dssp HHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-GHHHHH---
T ss_pred HHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-hhHHHH---
Confidence 5889999999886 4 899999999999888752 1 111123566788999999999875 333343
Q ss_pred ccccccCCCCcEEEeccCCCchhHHHHHHHHHhcCCcEEe-ecccCCHH
Q psy755 68 DGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGTK 115 (183)
Q Consensus 68 ~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~ 115 (183)
...+..|..++|.+. .......+.+.++++|..++. +.+..|..
T Consensus 85 ---~~~i~~g~~yvD~~~-~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~ 129 (386)
T PF03435_consen 85 ---RACIEAGVHYVDTSY-VTEEMLALDEEAKEAGVTALPGCGFDPGLS 129 (386)
T ss_dssp ---HHHHHHT-EEEESS--HHHHHHHCHHHHHHTTSEEE-S-BTTTBHH
T ss_pred ---HHHHHhCCCeeccch-hHHHHHHHHHHHHhhCCEEEeCcccccchH
Confidence 345678889999332 244556667777778877666 56666543
No 182
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=97.28 E-value=0.00042 Score=56.31 Aligned_cols=75 Identities=17% Similarity=0.240 Sum_probs=57.9
Q ss_pred cHHHHHHHHhCCCcEEEEcCC------chhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCC
Q psy755 2 GSHMARNLLKNGHDVIVYDKN------TDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAK 75 (183)
Q Consensus 2 G~~iA~~l~~~g~~V~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~ 75 (183)
|.+-|.+|...|++|++.-|. ....+++.+.|... .++.|+++.||+|++.+|+.+ -..+. +++.+.++
T Consensus 48 G~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~ADvVviLlPDt~-q~~v~---~~i~p~LK 122 (487)
T PRK05225 48 GLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPDKQ-HSDVV---RAVQPLMK 122 (487)
T ss_pred HHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHHhCCEEEEcCChHH-HHHHH---HHHHhhCC
Confidence 677788888889998854333 44566666677755 589999999999999999974 34444 88999999
Q ss_pred CCcEEE
Q psy755 76 PGVIVI 81 (183)
Q Consensus 76 ~~~iii 81 (183)
+|..+.
T Consensus 123 ~Ga~L~ 128 (487)
T PRK05225 123 QGAALG 128 (487)
T ss_pred CCCEEE
Confidence 998875
No 183
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.27 E-value=0.00052 Score=54.40 Aligned_cols=72 Identities=18% Similarity=0.291 Sum_probs=52.2
Q ss_pred CcEEEEcCCchhHHHHHHc----C--CcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEeccCCC
Q psy755 14 HDVIVYDKNTDASQTLAKE----G--ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVD 87 (183)
Q Consensus 14 ~~V~~~~~~~~~~~~~~~~----g--~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~ 87 (183)
.+|++|+|++++.+.+.+. + +..+++.++++++||+|+.++|.... ..++ + .+++++|.+|.-.++..
T Consensus 155 ~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~~-~Pvl---~--~~~lkpG~hV~aIGs~~ 228 (346)
T PRK07589 155 EEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKTN-ATIL---T--DDMVEPGMHINAVGGDC 228 (346)
T ss_pred eEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCCC-Ccee---c--HHHcCCCcEEEecCCCC
Confidence 3899999999988776542 3 34468899999999999999976431 1222 1 24678999988887776
Q ss_pred chhH
Q psy755 88 PQVP 91 (183)
Q Consensus 88 ~~~~ 91 (183)
|..-
T Consensus 229 p~~~ 232 (346)
T PRK07589 229 PGKT 232 (346)
T ss_pred CCcc
Confidence 6553
No 184
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=97.24 E-value=0.0026 Score=53.81 Aligned_cols=64 Identities=16% Similarity=0.303 Sum_probs=47.9
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcc--cC-CHHHH-----hccCCEEEEecCChHHHHHHh
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANM--AL-SLSTL-----ASGAEFIISMLPASQDVLDAY 64 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~--~~-~~~~~-----~~~adiVi~~vp~~~~~~~v~ 64 (183)
+|+.+++.|.+.|++|++.|.|+++++++.+.|... .| +.++. ++++|.++++++++.....+.
T Consensus 428 ~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~iv 499 (558)
T PRK10669 428 VGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGEIV 499 (558)
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHHHH
Confidence 478999999999999999999999999998875321 11 12222 458999999998866544443
No 185
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.24 E-value=0.00077 Score=47.96 Aligned_cols=63 Identities=25% Similarity=0.336 Sum_probs=47.7
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEE
Q psy755 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVI 81 (183)
Q Consensus 2 G~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iii 81 (183)
|..+++.|.+.|.+|++.+|+. +++.+.+.++|+||.+++.+. ++. . +.++++.+++
T Consensus 57 G~~~a~~L~~~g~~V~v~~r~~--------------~~l~~~l~~aDiVIsat~~~~----ii~--~---~~~~~~~viI 113 (168)
T cd01080 57 GKPLAALLLNRNATVTVCHSKT--------------KNLKEHTKQADIVIVAVGKPG----LVK--G---DMVKPGAVVI 113 (168)
T ss_pred HHHHHHHHhhCCCEEEEEECCc--------------hhHHHHHhhCCEEEEcCCCCc----eec--H---HHccCCeEEE
Confidence 6668888999988888888874 356678899999999998864 221 1 2456789999
Q ss_pred eccCCC
Q psy755 82 DSSTVD 87 (183)
Q Consensus 82 d~s~~~ 87 (183)
|.+...
T Consensus 114 Dla~pr 119 (168)
T cd01080 114 DVGINR 119 (168)
T ss_pred EccCCC
Confidence 998644
No 186
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=97.22 E-value=0.0032 Score=47.11 Aligned_cols=85 Identities=20% Similarity=0.241 Sum_probs=59.8
Q ss_pred EEEEcCCchhHHHHHHc-CCcccCCHHHHh-ccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEeccCC---Cchh
Q psy755 16 VIVYDKNTDASQTLAKE-GANMALSLSTLA-SGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV---DPQV 90 (183)
Q Consensus 16 V~~~~~~~~~~~~~~~~-g~~~~~~~~~~~-~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~---~~~~ 90 (183)
+.+||+++++.+.+.+. |...+++.++++ .+.|+|++|+|...+.+.. ...+..|+.++-.+.. ....
T Consensus 5 vaV~D~~~e~a~~~a~~~g~~~~~d~~eLl~~~vDaVviatp~~~H~e~a-------~~aL~aGkhVl~~s~gAlad~e~ 77 (229)
T TIGR03855 5 AAVYDRNPKDAKELAERCGAKIVSDFDEFLPEDVDIVVEAASQEAVKEYA-------EKILKNGKDLLIMSVGALADREL 77 (229)
T ss_pred EEEECCCHHHHHHHHHHhCCceECCHHHHhcCCCCEEEECCChHHHHHHH-------HHHHHCCCCEEEECCcccCCHHH
Confidence 45689999998887665 667788899886 5799999999986654444 3456777766555543 2345
Q ss_pred HHHHHHHHHhcCCcEEe
Q psy755 91 PQTLSNLAREKQITFLD 107 (183)
Q Consensus 91 ~~~~~~~~~~~g~~~~~ 107 (183)
.+.+.+..++.|..+.-
T Consensus 78 ~~~l~~aA~~~g~~l~i 94 (229)
T TIGR03855 78 RERLREVARSSGRKVYI 94 (229)
T ss_pred HHHHHHHHHhcCCEEEE
Confidence 66777777777765433
No 187
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=97.18 E-value=0.0024 Score=44.04 Aligned_cols=66 Identities=23% Similarity=0.335 Sum_probs=48.4
Q ss_pred CCcEEEEcCCchhHHHHHH----cCC--cccC----CHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEe
Q psy755 13 GHDVIVYDKNTDASQTLAK----EGA--NMAL----SLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVID 82 (183)
Q Consensus 13 g~~V~~~~~~~~~~~~~~~----~g~--~~~~----~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid 82 (183)
|.+|++|+|+....+.+.. .|. ..++ ++++.+++||+|+.+++.+.. + + .+++++|.+|+|
T Consensus 28 gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAtg~~~~----i---~--~~~ikpGa~Vid 98 (140)
T cd05212 28 GKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGSPKPEK----V---P--TEWIKPGATVIN 98 (140)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCCCCc----c---C--HHHcCCCCEEEE
Confidence 4589999999987655443 343 2333 688899999999999987632 2 1 357889999999
Q ss_pred ccCCC
Q psy755 83 SSTVD 87 (183)
Q Consensus 83 ~s~~~ 87 (183)
.+...
T Consensus 99 vg~~~ 103 (140)
T cd05212 99 CSPTK 103 (140)
T ss_pred cCCCc
Confidence 88655
No 188
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.17 E-value=0.00055 Score=55.58 Aligned_cols=78 Identities=15% Similarity=0.235 Sum_probs=56.1
Q ss_pred CcHHHHHHHHhCCC-cEEEEcCCchhHHHHHHc-C-C--cccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCC
Q psy755 1 MGSHMARNLLKNGH-DVIVYDKNTDASQTLAKE-G-A--NMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAK 75 (183)
Q Consensus 1 mG~~iA~~l~~~g~-~V~~~~~~~~~~~~~~~~-g-~--~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~ 75 (183)
||+.++..|...|. ++++++|+.++.+.+.+. + . ...+++.+.+.++|+||.|++.+..+-.. +.+. .
T Consensus 192 ~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~~vi~~----~~~~---~ 264 (414)
T PRK13940 192 TGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLEYIVTC----KYVG---D 264 (414)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCCeeECH----HHhC---C
Confidence 68899999999996 799999999998887764 3 2 22355677789999999999887653111 1111 2
Q ss_pred CCcEEEeccC
Q psy755 76 PGVIVIDSST 85 (183)
Q Consensus 76 ~~~iiid~s~ 85 (183)
+..+++|.+-
T Consensus 265 ~~~~~iDLav 274 (414)
T PRK13940 265 KPRVFIDISI 274 (414)
T ss_pred CCeEEEEeCC
Confidence 3457788764
No 189
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=97.14 E-value=0.0031 Score=53.75 Aligned_cols=98 Identities=17% Similarity=0.186 Sum_probs=65.3
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcc--cC-CHHHH-----hccCCEEEEecCChHHHHHHhcCCccccc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANM--AL-SLSTL-----ASGAEFIISMLPASQDVLDAYDGSDGILK 72 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~--~~-~~~~~-----~~~adiVi~~vp~~~~~~~v~~~~~~l~~ 72 (183)
+|+.+++.|.+.|+++++.|.|+++++.+.+.|... .| +..+. +++||.+++++++++....++ .....
T Consensus 411 ~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~~i~---~~~r~ 487 (601)
T PRK03659 411 FGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTMKIV---ELCQQ 487 (601)
T ss_pred HHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHHHHH---HHHHH
Confidence 478899999999999999999999999998876421 11 22222 468999999999977665554 33444
Q ss_pred cCCCCcEEEeccCCCchhHHHHHHHHHhcCCcEEe
Q psy755 73 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 107 (183)
Q Consensus 73 ~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~ 107 (183)
..+.-++++-..+ +.-.+.+.+.|...+-
T Consensus 488 ~~p~~~IiaRa~~------~~~~~~L~~~Ga~~vv 516 (601)
T PRK03659 488 HFPHLHILARARG------RVEAHELLQAGVTQFS 516 (601)
T ss_pred HCCCCeEEEEeCC------HHHHHHHHhCCCCEEE
Confidence 3333355542222 2334556667877664
No 190
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.12 E-value=0.0015 Score=50.28 Aligned_cols=64 Identities=17% Similarity=0.309 Sum_probs=47.2
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
+|+.+|..|.+.|..|+++++.. .++.+.+++||+||.+++.+.. + . .+.+++|.+|
T Consensus 170 VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~p~~----i---~--~~~vk~gavV 226 (286)
T PRK14175 170 VGQPVSKLLLQKNASVTILHSRS--------------KDMASYLKDADVIVSAVGKPGL----V---T--KDVVKEGAVI 226 (286)
T ss_pred hHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHHhhCCEEEECCCCCcc----c---C--HHHcCCCcEE
Confidence 47778888887777777776432 3577889999999999988652 2 1 1357889999
Q ss_pred EeccCCC
Q psy755 81 IDSSTVD 87 (183)
Q Consensus 81 id~s~~~ 87 (183)
||.+...
T Consensus 227 IDvGi~~ 233 (286)
T PRK14175 227 IDVGNTP 233 (286)
T ss_pred EEcCCCc
Confidence 9999643
No 191
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.12 E-value=0.00067 Score=54.68 Aligned_cols=81 Identities=21% Similarity=0.370 Sum_probs=57.6
Q ss_pred CcHHHHHHHHhCCC-cEEEEcCCchhHHHHHHc-CC--cccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCC-
Q psy755 1 MGSHMARNLLKNGH-DVIVYDKNTDASQTLAKE-GA--NMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAK- 75 (183)
Q Consensus 1 mG~~iA~~l~~~g~-~V~~~~~~~~~~~~~~~~-g~--~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~- 75 (183)
||.-.|++|.++|. +|++.+|+.++++.+++. |. ...+++.+.+.++|+||.++..+..+-.- ..+...+.
T Consensus 189 m~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~~~ii~~----~~ve~a~~~ 264 (414)
T COG0373 189 MGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAPHPIITR----EMVERALKI 264 (414)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCCccccCH----HHHHHHHhc
Confidence 78889999999995 899999999999888765 53 34456777889999999998776543211 22222222
Q ss_pred -CCcEEEeccC
Q psy755 76 -PGVIVIDSST 85 (183)
Q Consensus 76 -~~~iiid~s~ 85 (183)
++.+++|.+.
T Consensus 265 r~~~livDiav 275 (414)
T COG0373 265 RKRLLIVDIAV 275 (414)
T ss_pred ccCeEEEEecC
Confidence 2246788775
No 192
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.10 E-value=0.0027 Score=49.01 Aligned_cols=103 Identities=17% Similarity=0.102 Sum_probs=65.0
Q ss_pred CcHHHHHHHHhCCC-cEEEEcCCchhHHHHHHc-C----Cccc---CCHHHHhccCCEEEEecCChHHHHHHhcCCccc-
Q psy755 1 MGSHMARNLLKNGH-DVIVYDKNTDASQTLAKE-G----ANMA---LSLSTLASGAEFIISMLPASQDVLDAYDGSDGI- 70 (183)
Q Consensus 1 mG~~iA~~l~~~g~-~V~~~~~~~~~~~~~~~~-g----~~~~---~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l- 70 (183)
+|++++..|.+.|. +|++++|++++.+.+.+. + +... ++..+.+.++|+||-|+|.+........ ...
T Consensus 136 aarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~~~~~~~l--~~~~ 213 (282)
T TIGR01809 136 TSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADVPADYVDL--FATV 213 (282)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCCCCCCHHHh--hhhh
Confidence 57899999999997 799999999998887653 1 1111 1233455789999999997653321100 000
Q ss_pred ----cccCCCCcEEEeccCCCchhHHHHHHHHHhcCCcEEe
Q psy755 71 ----LKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 107 (183)
Q Consensus 71 ----~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~ 107 (183)
...++++.+++|.--....+ .+.+..+++|...++
T Consensus 214 ~~~~~~~~~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~~ 252 (282)
T TIGR01809 214 PFLLLKRKSSEGIFLDAAYDPWPT--PLVAIVSAAGWRVIS 252 (282)
T ss_pred hhhccccCCCCcEEEEEeeCCCCC--HHHHHHHHCCCEEEC
Confidence 01234677888888544333 345555667766665
No 193
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=97.07 E-value=0.0023 Score=45.09 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=28.6
Q ss_pred CCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEeccCCCc
Q psy755 38 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDP 88 (183)
Q Consensus 38 ~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~~ 88 (183)
.++++.+++||+||.++..+..++ .+++++|.+|||++....
T Consensus 71 ~~l~~~~~~ADIVVsa~G~~~~i~---------~~~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 71 KNLQEITRRADIVVSAVGKPNLIK---------ADWIKPGAVVIDVGINYV 112 (160)
T ss_dssp SSHHHHHTTSSEEEE-SSSTT-B----------GGGS-TTEEEEE--CEEE
T ss_pred CcccceeeeccEEeeeeccccccc---------cccccCCcEEEecCCccc
Confidence 467888999999999998765322 246889999999987544
No 194
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=97.06 E-value=0.009 Score=47.39 Aligned_cols=100 Identities=16% Similarity=0.246 Sum_probs=67.4
Q ss_pred CcHHHHHHHHhC--CCcEE-EEcCCchhHHHHHHc-CCcccCCHHHHhccCCEEEEecCC----hHHHHHHhcCCccccc
Q psy755 1 MGSHMARNLLKN--GHDVI-VYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPA----SQDVLDAYDGSDGILK 72 (183)
Q Consensus 1 mG~~iA~~l~~~--g~~V~-~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~adiVi~~vp~----~~~~~~v~~~~~~l~~ 72 (183)
||...+..+.+. +++++ ++|+++++.+++.+. |+..+++.++++++.|++++++|. ..+.+-+ ..
T Consensus 13 ~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e~a-------~~ 85 (343)
T TIGR01761 13 FGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSALA-------RA 85 (343)
T ss_pred HHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHHHH-------HH
Confidence 355566667664 46766 479999998887765 777788999999989999999864 2332222 34
Q ss_pred cCCCCcEEEeccCCCchhHHHHHHHHHhcCCcEEe
Q psy755 73 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 107 (183)
Q Consensus 73 ~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~ 107 (183)
.+..|+.|+--=-........+.+..+++|..+.-
T Consensus 86 aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~v 120 (343)
T TIGR01761 86 LLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYLV 120 (343)
T ss_pred HHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 56788776632222245666777777777776554
No 195
>KOG1683|consensus
Probab=97.01 E-value=0.00099 Score=52.35 Aligned_cols=145 Identities=15% Similarity=0.093 Sum_probs=80.2
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHH-----------cC---------C--cccCCH-HHHhccCCEEEEecCCh
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAK-----------EG---------A--NMALSL-STLASGAEFIISMLPAS 57 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g---------~--~~~~~~-~~~~~~adiVi~~vp~~ 57 (183)
||+.||..+..+|++++..|.+..-.++... .+ . ....++ ..-++++|+|+.++-.+
T Consensus 1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~~~~dmvieav~ed 80 (380)
T KOG1683|consen 1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGFANADMVIEAVFED 80 (380)
T ss_pred CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccccccceeccchhhh
Confidence 9999999999999999999999765442211 11 1 011111 12356899999999887
Q ss_pred HHHHHHhcCCccccccCCCCcEEEeccCCCchhH-HHHHHHHHh-cCCcEEeecccCCHHHHhcCceEEEecCCHHHHHH
Q psy755 58 QDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVP-QTLSNLARE-KQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEK 135 (183)
Q Consensus 58 ~~~~~v~~~~~~l~~~l~~~~iiid~s~~~~~~~-~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 135 (183)
..+++-++ .++...-++..++-..+|+.+... .+....... .|.||...... ...-+......++......
T Consensus 81 l~Lk~~l~--~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~-----m~LlEii~~~~tS~~~iA~ 153 (380)
T KOG1683|consen 81 LELKHELF--KSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHW-----MQLLEIILALYTSKLTIAT 153 (380)
T ss_pred HHHHHHHH--HHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHH-----HHHHHHHHhcCCCchHHHH
Confidence 77776554 666665555565544444444433 222222211 15565552111 1111111222345555555
Q ss_pred HHHHHHHhcCCeEEeCC
Q psy755 136 AKPILKCMGRNIVHCGD 152 (183)
Q Consensus 136 ~~~l~~~~g~~~~~~g~ 152 (183)
+-+.-..+|+-++.+++
T Consensus 154 Ain~~~~~gk~~vvVg~ 170 (380)
T KOG1683|consen 154 AINGGSPAGKLPVVVGN 170 (380)
T ss_pred HHhcccccCCccEEecc
Confidence 55666666666666665
No 196
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.98 E-value=0.0038 Score=48.34 Aligned_cols=102 Identities=10% Similarity=0.129 Sum_probs=63.2
Q ss_pred CcHHHHHHHHhCCCc-EEEEcCCc---hhHHHHHHc----C----Cccc--C---CHHHHhccCCEEEEecCChHHHHHH
Q psy755 1 MGSHMARNLLKNGHD-VIVYDKNT---DASQTLAKE----G----ANMA--L---SLSTLASGAEFIISMLPASQDVLDA 63 (183)
Q Consensus 1 mG~~iA~~l~~~g~~-V~~~~~~~---~~~~~~~~~----g----~~~~--~---~~~~~~~~adiVi~~vp~~~~~~~v 63 (183)
+|++++..|++.|++ |++++|++ ++.+.+.+. + .... + +..+.++.+|+||-++|.+..-..-
T Consensus 137 agrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilINaTp~Gm~~~~~ 216 (289)
T PRK12548 137 AATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVNATLVGMKPNDG 216 (289)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEEeCCCCCCCCCC
Confidence 378899999999996 99999997 555554321 1 1111 1 1233456789999999876421000
Q ss_pred hcCCccc--cccCCCCcEEEeccCCCchhHHHHHHHHHhcCCcEEe
Q psy755 64 YDGSDGI--LKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 107 (183)
Q Consensus 64 ~~~~~~l--~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~ 107 (183)
- .-+ ...++++.+++|..-....+ .+.+..++.|.+.++
T Consensus 217 ~---~~~~~~~~l~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~~ 257 (289)
T PRK12548 217 E---TNIKDTSVFRKDLVVADTVYNPKKT--KLLEDAEAAGCKTVG 257 (289)
T ss_pred C---CCCCcHHhcCCCCEEEEecCCCCCC--HHHHHHHHCCCeeeC
Confidence 0 001 23467788999998655444 355566677877666
No 197
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=96.96 E-value=0.0028 Score=45.91 Aligned_cols=78 Identities=21% Similarity=0.187 Sum_probs=52.8
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHH-HHHcCCccc--CC----HHHHhccCCEEEEecCChHH-HHHHhcCCccccc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQT-LAKEGANMA--LS----LSTLASGAEFIISMLPASQD-VLDAYDGSDGILK 72 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~-~~~~g~~~~--~~----~~~~~~~adiVi~~vp~~~~-~~~v~~~~~~l~~ 72 (183)
.|+.+|..|.+.|..|++.|.+....-. ....+-..+ .+ +.+.+++||+||.+++.+.. ++ .+
T Consensus 74 VGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~~~~i~---------~d 144 (197)
T cd01079 74 VGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSPNYKVP---------TE 144 (197)
T ss_pred chHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccCCCCCccC---------HH
Confidence 4899999999999999999755432200 000000011 12 67889999999999998653 22 34
Q ss_pred cCCCCcEEEeccCCC
Q psy755 73 HAKPGVIVIDSSTVD 87 (183)
Q Consensus 73 ~l~~~~iiid~s~~~ 87 (183)
.+++|.+|||.+...
T Consensus 145 ~ik~GavVIDVGi~~ 159 (197)
T cd01079 145 LLKDGAICINFASIK 159 (197)
T ss_pred HcCCCcEEEEcCCCc
Confidence 678999999999653
No 198
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=96.94 E-value=0.0059 Score=47.70 Aligned_cols=81 Identities=15% Similarity=0.213 Sum_probs=52.2
Q ss_pred CcHHHHHHHHhCCC-cEEEEcCCchhHHHH-H---Hc--------CCcccCCHHHHhccCCEEEEecCChH---------
Q psy755 1 MGSHMARNLLKNGH-DVIVYDKNTDASQTL-A---KE--------GANMALSLSTLASGAEFIISMLPASQ--------- 58 (183)
Q Consensus 1 mG~~iA~~l~~~g~-~V~~~~~~~~~~~~~-~---~~--------g~~~~~~~~~~~~~adiVi~~vp~~~--------- 58 (183)
||..+|..++..|+ +|+++|++++..+.. . +. .+..+.+.++ +++||+||++++.+.
T Consensus 12 vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p~~~~~sR~~l 90 (305)
T TIGR01763 12 VGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLPRKPGMSREDL 90 (305)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCCCCcCCCHHHH
Confidence 79999999999887 899999977643311 1 10 1223456666 789999999998432
Q ss_pred ------HHHHHhcCCccccccCCCCcEEEeccCC
Q psy755 59 ------DVLDAYDGSDGILKHAKPGVIVIDSSTV 86 (183)
Q Consensus 59 ------~~~~v~~~~~~l~~~l~~~~iiid~s~~ 86 (183)
.++.+. +.+.+.. ++.+|+..|+-
T Consensus 91 ~~~N~~iv~~i~---~~I~~~~-p~~~iIv~tNP 120 (305)
T TIGR01763 91 LSMNAGIVREVT---GRIMEHS-PNPIIVVVSNP 120 (305)
T ss_pred HHHHHHHHHHHH---HHHHHHC-CCeEEEEecCc
Confidence 122232 4455554 55666666663
No 199
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.91 E-value=0.021 Score=42.27 Aligned_cols=95 Identities=16% Similarity=0.243 Sum_probs=57.9
Q ss_pred cHHHHHHHHhCC---C-cEEEEcCCchhHHHHHHc-CCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCC
Q psy755 2 GSHMARNLLKNG---H-DVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 76 (183)
Q Consensus 2 G~~iA~~l~~~g---~-~V~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~ 76 (183)
|..+...+. .| + -+.+|||+.+++..+.+. +.....+++|.+...|+++.|-.. ++++... .+.|..
T Consensus 12 G~~l~e~v~-~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~-~Av~e~~------~~~L~~ 83 (255)
T COG1712 12 GKFLLELVR-DGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASP-EAVREYV------PKILKA 83 (255)
T ss_pred HHHHHHHHh-cCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCH-HHHHHHh------HHHHhc
Confidence 444544333 33 4 477899999999988776 455567899999999999999954 6666654 234455
Q ss_pred Cc--EEEeccCCCchhHHHHHHHHHhcCCc
Q psy755 77 GV--IVIDSSTVDPQVPQTLSNLAREKQIT 104 (183)
Q Consensus 77 ~~--iiid~s~~~~~~~~~~~~~~~~~g~~ 104 (183)
|. +|+..+...-.......+.+.+.+-+
T Consensus 84 g~d~iV~SVGALad~~l~erl~~lak~~~~ 113 (255)
T COG1712 84 GIDVIVMSVGALADEGLRERLRELAKCGGA 113 (255)
T ss_pred CCCEEEEechhccChHHHHHHHHHHhcCCc
Confidence 54 44444443333333333334444433
No 200
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.90 E-value=0.0069 Score=46.14 Aligned_cols=100 Identities=16% Similarity=0.212 Sum_probs=63.2
Q ss_pred CcHHHHHHHHhC-CCcEEE-EcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCc
Q psy755 1 MGSHMARNLLKN-GHDVIV-YDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 78 (183)
Q Consensus 1 mG~~iA~~l~~~-g~~V~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ 78 (183)
||+.+++.+.+. +++++. +|+++++.......++...+++.++++++|+|+.++|+... ...+ ...+..|+
T Consensus 13 mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~p~~~-~~~~------~~al~~G~ 85 (257)
T PRK00048 13 MGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTTPEAT-LENL------EFALEHGK 85 (257)
T ss_pred HHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCCHHHH-HHHH------HHHHHcCC
Confidence 788888888764 677665 78888765544223555667888888889999988876443 3332 34566777
Q ss_pred EEEeccCC-CchhHHHHHHHHHhcCCcEEeec
Q psy755 79 IVIDSSTV-DPQVPQTLSNLAREKQITFLDAP 109 (183)
Q Consensus 79 iiid~s~~-~~~~~~~~~~~~~~~g~~~~~~~ 109 (183)
.++-.++. .+.....+.+ .. ++...+-.|
T Consensus 86 ~vvigttG~s~~~~~~l~~-aa-~~~~v~~s~ 115 (257)
T PRK00048 86 PLVIGTTGFTEEQLAELEE-AA-KKIPVVIAP 115 (257)
T ss_pred CEEEECCCCCHHHHHHHHH-Hh-cCCCEEEEC
Confidence 76655544 4455555555 33 444444443
No 201
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.84 E-value=0.01 Score=50.84 Aligned_cols=102 Identities=22% Similarity=0.221 Sum_probs=65.3
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcc--cC-CHHHH-----hccCCEEEEecCChHHHHHHhcCCccccc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANM--AL-SLSTL-----ASGAEFIISMLPASQDVLDAYDGSDGILK 72 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~--~~-~~~~~-----~~~adiVi~~vp~~~~~~~v~~~~~~l~~ 72 (183)
+|+.+++.|.+.|+++++.|.|+++++.+.+.|... .| +..+. ++++|.|++++++++.-..+. .....
T Consensus 411 ~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~~i~---~~ar~ 487 (621)
T PRK03562 411 FGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSLQLV---ELVKE 487 (621)
T ss_pred HHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHHHHH---HHHHH
Confidence 478899999999999999999999999998876422 11 22222 458999999998876555553 33333
Q ss_pred cCCCCcEEEeccCCCchhHHHHHHHHHhcCCcEEeeccc
Q psy755 73 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVS 111 (183)
Q Consensus 73 ~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~~~~~ 111 (183)
..+.-.+++-..+ ..-...+.+.|..++.....
T Consensus 488 ~~p~~~iiaRa~d------~~~~~~L~~~Gad~v~~e~~ 520 (621)
T PRK03562 488 HFPHLQIIARARD------VDHYIRLRQAGVEKPERETF 520 (621)
T ss_pred hCCCCeEEEEECC------HHHHHHHHHCCCCEEehhhH
Confidence 3333344442221 12244556678777654333
No 202
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=96.83 E-value=0.0048 Score=41.13 Aligned_cols=92 Identities=18% Similarity=0.242 Sum_probs=58.3
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEE
Q psy755 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVI 81 (183)
Q Consensus 2 G~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iii 81 (183)
|.-+.+.|.++|++|+..+...+.+. |...+.++.|.-...|++++++|. .....++ +++... ..+.+++
T Consensus 16 g~~v~~~l~~~G~~v~~Vnp~~~~i~-----G~~~y~sl~e~p~~iDlavv~~~~-~~~~~~v---~~~~~~-g~~~v~~ 85 (116)
T PF13380_consen 16 GYRVLRNLKAAGYEVYPVNPKGGEIL-----GIKCYPSLAEIPEPIDLAVVCVPP-DKVPEIV---DEAAAL-GVKAVWL 85 (116)
T ss_dssp HHHHHHHHHHTT-EEEEESTTCSEET-----TEE-BSSGGGCSST-SEEEE-S-H-HHHHHHH---HHHHHH-T-SEEEE
T ss_pred HHHHHHHHHhCCCEEEEECCCceEEC-----cEEeeccccCCCCCCCEEEEEcCH-HHHHHHH---HHHHHc-CCCEEEE
Confidence 56678889999999998886664433 556677888733789999999987 4555665 666543 4555555
Q ss_pred eccCCCchhHHHHHHHHHhcCCcEEe
Q psy755 82 DSSTVDPQVPQTLSNLAREKQITFLD 107 (183)
Q Consensus 82 d~s~~~~~~~~~~~~~~~~~g~~~~~ 107 (183)
..+ ....++.+.+++.|++++.
T Consensus 86 ~~g----~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 86 QPG----AESEELIEAAREAGIRVIG 107 (116)
T ss_dssp -TT----S--HHHHHHHHHTT-EEEE
T ss_pred Ecc----hHHHHHHHHHHHcCCEEEe
Confidence 444 5556677777788888875
No 203
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.81 E-value=0.0045 Score=47.66 Aligned_cols=63 Identities=24% Similarity=0.333 Sum_probs=42.4
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEE
Q psy755 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVI 81 (183)
Q Consensus 2 G~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iii 81 (183)
|+.++..|.+.|..|+++.. .+.++.+.+++||+||.+++.+.. + . .+.+++|.+||
T Consensus 171 GkPla~lL~~~~atVt~~hs--------------~t~~l~~~~~~ADIVV~avG~~~~----i---~--~~~ik~gavVI 227 (285)
T PRK14189 171 GKPMAMLLLQAGATVTICHS--------------KTRDLAAHTRQADIVVAAVGKRNV----L---T--ADMVKPGATVI 227 (285)
T ss_pred HHHHHHHHHHCCCEEEEecC--------------CCCCHHHHhhhCCEEEEcCCCcCc----c---C--HHHcCCCCEEE
Confidence 45555555555555554321 234677889999999999997542 2 2 25788999999
Q ss_pred eccCCC
Q psy755 82 DSSTVD 87 (183)
Q Consensus 82 d~s~~~ 87 (183)
|.+...
T Consensus 228 DVGin~ 233 (285)
T PRK14189 228 DVGMNR 233 (285)
T ss_pred Eccccc
Confidence 998643
No 204
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.74 E-value=0.0089 Score=53.73 Aligned_cols=106 Identities=21% Similarity=0.180 Sum_probs=72.7
Q ss_pred CcHHHHHHHHhCC-Cc-------------EEEEcCCchhHHHHHHc--C---Ccc-cCCHHHH---hccCCEEEEecCCh
Q psy755 1 MGSHMARNLLKNG-HD-------------VIVYDKNTDASQTLAKE--G---ANM-ALSLSTL---ASGAEFIISMLPAS 57 (183)
Q Consensus 1 mG~~iA~~l~~~g-~~-------------V~~~~~~~~~~~~~~~~--g---~~~-~~~~~~~---~~~adiVi~~vp~~ 57 (183)
||+..+..|++.. ++ |.+.|+++++++++.+. + +.. ..+.+++ ++.+|+|+.++|..
T Consensus 580 VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~~~DaVIsalP~~ 659 (1042)
T PLN02819 580 VCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVSQVDVVISLLPAS 659 (1042)
T ss_pred HHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhcCCCEEEECCCch
Confidence 5788888998753 33 88899999988877653 3 222 3454444 46899999999986
Q ss_pred HHHHHHhcCCccccccCCCCcEEEeccCCCchhHHHHHHHHHhcCCcEEe-ecccCCH
Q psy755 58 QDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGT 114 (183)
Q Consensus 58 ~~~~~v~~~~~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~ 114 (183)
.+..-+ ...+..|+.+++.+ ........+.+.+++.|+.++. +....+.
T Consensus 660 ~H~~VA-------kaAieaGkHvv~ek-y~~~e~~~L~e~Ak~AGV~~m~e~GlDPGi 709 (1042)
T PLN02819 660 CHAVVA-------KACIELKKHLVTAS-YVSEEMSALDSKAKEAGITILCEMGLDPGI 709 (1042)
T ss_pred hhHHHH-------HHHHHcCCCEEECc-CCHHHHHHHHHHHHHcCCEEEECCccCHHH
Confidence 543332 45677888998887 4445566777888888877666 4444333
No 205
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.71 E-value=0.0063 Score=46.83 Aligned_cols=62 Identities=26% Similarity=0.321 Sum_probs=42.3
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEE
Q psy755 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVI 81 (183)
Q Consensus 2 G~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iii 81 (183)
|+.++..|.+.|..|+++.+. +.++.+.++++|+||.+++.+..+. .+++++|.+||
T Consensus 172 G~Pla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvi~avG~p~~v~---------~~~vk~gavVI 228 (285)
T PRK10792 172 GRPMSLELLLAGCTVTVCHRF--------------TKNLRHHVRNADLLVVAVGKPGFIP---------GEWIKPGAIVI 228 (285)
T ss_pred HHHHHHHHHHCCCeEEEEECC--------------CCCHHHHHhhCCEEEEcCCCccccc---------HHHcCCCcEEE
Confidence 455555555555555554322 3467888999999999997755322 25688999999
Q ss_pred eccCC
Q psy755 82 DSSTV 86 (183)
Q Consensus 82 d~s~~ 86 (183)
|.+..
T Consensus 229 DvGin 233 (285)
T PRK10792 229 DVGIN 233 (285)
T ss_pred Ecccc
Confidence 99853
No 206
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.70 E-value=0.0083 Score=40.42 Aligned_cols=84 Identities=23% Similarity=0.313 Sum_probs=52.8
Q ss_pred CcHHHHHHHHh-CCCcEEE-EcCCch-h----HHHHH---HcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccc
Q psy755 1 MGSHMARNLLK-NGHDVIV-YDKNTD-A----SQTLA---KEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGI 70 (183)
Q Consensus 1 mG~~iA~~l~~-~g~~V~~-~~~~~~-~----~~~~~---~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l 70 (183)
||+.+++.+.+ .+++++. ++++++ . +..+. ..++...++++++++.+|+||-.+ .+......+ +
T Consensus 12 MG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT-~p~~~~~~~---~-- 85 (124)
T PF01113_consen 12 MGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT-NPDAVYDNL---E-- 85 (124)
T ss_dssp HHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES--HHHHHHHH---H--
T ss_pred HHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC-ChHHhHHHH---H--
Confidence 89999999998 6788665 688772 1 11111 235677889999999999999998 445555544 3
Q ss_pred cccCCCCcEEEeccCCCchhH
Q psy755 71 LKHAKPGVIVIDSSTVDPQVP 91 (183)
Q Consensus 71 ~~~l~~~~iiid~s~~~~~~~ 91 (183)
..+..|..+|-.|+......
T Consensus 86 -~~~~~g~~~ViGTTG~~~~~ 105 (124)
T PF01113_consen 86 -YALKHGVPLVIGTTGFSDEQ 105 (124)
T ss_dssp -HHHHHT-EEEEE-SSSHHHH
T ss_pred -HHHhCCCCEEEECCCCCHHH
Confidence 23445777777777665443
No 207
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=96.69 E-value=0.025 Score=44.53 Aligned_cols=95 Identities=20% Similarity=0.274 Sum_probs=63.8
Q ss_pred HHHHHHhCCC--c-EEEEcCCchhHHHHHHc-CCc-ccCCHHHHhcc--CCEEEEecCChHHHHHHhcCCccccccCCCC
Q psy755 5 MARNLLKNGH--D-VIVYDKNTDASQTLAKE-GAN-MALSLSTLASG--AEFIISMLPASQDVLDAYDGSDGILKHAKPG 77 (183)
Q Consensus 5 iA~~l~~~g~--~-V~~~~~~~~~~~~~~~~-g~~-~~~~~~~~~~~--adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~ 77 (183)
.+..+.+.+. + |.++|+++++++.+.+. ++. .+++.++++++ .|+|++++|+..+.+-+ ...|..|
T Consensus 19 ~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~~-------~~AL~aG 91 (342)
T COG0673 19 HLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHAELA-------LAALEAG 91 (342)
T ss_pred hHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhHHHH-------HHHHhcC
Confidence 4445666552 4 55679999998887765 664 67789999875 59999999997776555 3567788
Q ss_pred cEEEecc--CCCchhHHHHHHHHHhcCCcEE
Q psy755 78 VIVIDSS--TVDPQVPQTLSNLAREKQITFL 106 (183)
Q Consensus 78 ~iiid~s--~~~~~~~~~~~~~~~~~g~~~~ 106 (183)
+.|+--= +....+...+.+..++.|..+.
T Consensus 92 khVl~EKPla~t~~ea~~l~~~a~~~~~~l~ 122 (342)
T COG0673 92 KHVLCEKPLALTLEEAEELVELARKAGVKLM 122 (342)
T ss_pred CEEEEcCCCCCCHHHHHHHHHHHHHcCCcee
Confidence 8765211 2234455666677666665433
No 208
>PRK06223 malate dehydrogenase; Reviewed
Probab=96.64 E-value=0.0098 Score=46.40 Aligned_cols=54 Identities=19% Similarity=0.247 Sum_probs=38.2
Q ss_pred CcHHHHHHHHhCCC-cEEEEcCCchhHHHHHH----c----C--Cc--ccCCHHHHhccCCEEEEecC
Q psy755 1 MGSHMARNLLKNGH-DVIVYDKNTDASQTLAK----E----G--AN--MALSLSTLASGAEFIISMLP 55 (183)
Q Consensus 1 mG~~iA~~l~~~g~-~V~~~~~~~~~~~~~~~----~----g--~~--~~~~~~~~~~~adiVi~~vp 55 (183)
||..+|..++..|+ +|+++|+++++.+.... . + .. ...+. +.+++||+||+++.
T Consensus 13 vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~ 79 (307)
T PRK06223 13 VGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAG 79 (307)
T ss_pred HHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCC
Confidence 68899999998876 99999998876543221 1 1 11 22344 55799999999973
No 209
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=96.63 E-value=0.0085 Score=46.29 Aligned_cols=101 Identities=20% Similarity=0.184 Sum_probs=64.3
Q ss_pred cHHHHHHHHhCCC-cEEEEcCCchhHHHHHHc-----CC--cccCC---HHHHhccCCEEEEecCChHHHHHHhcCCccc
Q psy755 2 GSHMARNLLKNGH-DVIVYDKNTDASQTLAKE-----GA--NMALS---LSTLASGAEFIISMLPASQDVLDAYDGSDGI 70 (183)
Q Consensus 2 G~~iA~~l~~~g~-~V~~~~~~~~~~~~~~~~-----g~--~~~~~---~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l 70 (183)
|++++..|++.|. +|+++||+.++.+.+.+. +. ....+ ..+....+|+||-++|.+..-..-. .--
T Consensus 139 arAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~Gm~~~~~~---~~~ 215 (283)
T PRK14027 139 GNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMPAHPGT---AFD 215 (283)
T ss_pred HHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCCCCCCCCCC---CCC
Confidence 6788889999997 799999999998877643 11 11112 2334567999999998654210000 000
Q ss_pred cccCCCCcEEEeccCCCchhHHHHHHHHHhcCCcEEe
Q psy755 71 LKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 107 (183)
Q Consensus 71 ~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~ 107 (183)
...+.++.++.|..-....+ .+.+..+++|...++
T Consensus 216 ~~~l~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~~ 250 (283)
T PRK14027 216 VSCLTKDHWVGDVVYMPIET--ELLKAARALGCETLD 250 (283)
T ss_pred HHHcCCCcEEEEcccCCCCC--HHHHHHHHCCCEEEc
Confidence 13466778888988655444 345556677877666
No 210
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.62 E-value=0.021 Score=42.66 Aligned_cols=62 Identities=18% Similarity=0.294 Sum_probs=45.3
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHH--cC---Cccc----CCHHHH-hccCCEEEEecCChHHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAK--EG---ANMA----LSLSTL-ASGAEFIISMLPASQDVLDA 63 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~--~g---~~~~----~~~~~~-~~~adiVi~~vp~~~~~~~v 63 (183)
+|..+|+.|.+.||+|++.|++++++++..+ .. +... +.+.++ +.++|+++.++.... ...+
T Consensus 11 vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~-~N~i 82 (225)
T COG0569 11 VGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDE-VNSV 82 (225)
T ss_pred HHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCH-HHHH
Confidence 4899999999999999999999999988555 22 1111 223344 568999999997743 3443
No 211
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=96.62 E-value=0.0071 Score=46.16 Aligned_cols=54 Identities=15% Similarity=0.253 Sum_probs=40.9
Q ss_pred CcHHHHHHHHhCC----CcEEEEcCCchhHHHHHHc-----------CCcccCCHHHHhccCCEEEEec
Q psy755 1 MGSHMARNLLKNG----HDVIVYDKNTDASQTLAKE-----------GANMALSLSTLASGAEFIISML 54 (183)
Q Consensus 1 mG~~iA~~l~~~g----~~V~~~~~~~~~~~~~~~~-----------g~~~~~~~~~~~~~adiVi~~v 54 (183)
||..++..|+..| .+|++||+++++++..... .+..++++.+.+++||+||++.
T Consensus 10 vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~ 78 (263)
T cd00650 10 VGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITA 78 (263)
T ss_pred HHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECC
Confidence 5889999999888 6999999998776543321 2233556678899999999966
No 212
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.62 E-value=0.003 Score=50.82 Aligned_cols=66 Identities=9% Similarity=0.194 Sum_probs=46.1
Q ss_pred cEEEEcCCchhHHHHHHc------C---CcccCCHHHHhccCCEEEEecCChHH---HHHHhcCCccccccCCCCcEEEe
Q psy755 15 DVIVYDKNTDASQTLAKE------G---ANMALSLSTLASGAEFIISMLPASQD---VLDAYDGSDGILKHAKPGVIVID 82 (183)
Q Consensus 15 ~V~~~~~~~~~~~~~~~~------g---~~~~~~~~~~~~~adiVi~~vp~~~~---~~~v~~~~~~l~~~l~~~~iiid 82 (183)
+|++|+|++++.+.+.+. + +..+++.++++++||+|+.|++.... ...++. ..++++|.+|+.
T Consensus 183 ~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~~~~~s~~Pv~~-----~~~lkpG~hv~~ 257 (379)
T PRK06199 183 TIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGETGDPSTYPYVK-----REWVKPGAFLLM 257 (379)
T ss_pred EEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCCCCCCCcCcEec-----HHHcCCCcEEec
Confidence 899999999988776542 2 34578899999999999999975331 112221 246788988875
Q ss_pred ccC
Q psy755 83 SST 85 (183)
Q Consensus 83 ~s~ 85 (183)
.++
T Consensus 258 ig~ 260 (379)
T PRK06199 258 PAA 260 (379)
T ss_pred CCc
Confidence 443
No 213
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=96.57 E-value=0.02 Score=47.41 Aligned_cols=96 Identities=15% Similarity=0.135 Sum_probs=61.8
Q ss_pred HHHHHHHHhCCCcEEEEcCCchhHHH--HHH--------------------cCCcccCCHHHHhccCCEEEEecCChHHH
Q psy755 3 SHMARNLLKNGHDVIVYDKNTDASQT--LAK--------------------EGANMALSLSTLASGAEFIISMLPASQDV 60 (183)
Q Consensus 3 ~~iA~~l~~~g~~V~~~~~~~~~~~~--~~~--------------------~g~~~~~~~~~~~~~adiVi~~vp~~~~~ 60 (183)
..++..|.+.|.+|.+||.--+..+. ... .++..+++..++++++|+|++++..++ .
T Consensus 347 ~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~vvi~t~~~e-f 425 (473)
T PLN02353 347 IDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQVSVVWDAYEATKGAHGICILTEWDE-F 425 (473)
T ss_pred HHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccceeeeCCHHHHhcCCCEEEECCCChH-h
Confidence 46788899999999999976433221 110 023445677789999999999998754 4
Q ss_pred HHHhcCCccccccCCCCcEEEeccCCCchhHHHHHHHHHhcCCcEEe
Q psy755 61 LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 107 (183)
Q Consensus 61 ~~v~~~~~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~ 107 (183)
+..-+ +.+.+.+....+|+|..+.... +..++.|+.|..
T Consensus 426 ~~l~~--~~~~~~m~~~~~viD~rn~l~~------~~~~~~G~~y~~ 464 (473)
T PLN02353 426 KTLDY--QKIYDNMQKPAFVFDGRNVLDH------EKLREIGFIVYS 464 (473)
T ss_pred cccCH--HHHHHhccCCCEEEECCCCCCH------HHHHhCCcEEEE
Confidence 33211 3444455555689998887642 223345777766
No 214
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.56 E-value=0.009 Score=45.97 Aligned_cols=41 Identities=12% Similarity=0.256 Sum_probs=32.4
Q ss_pred CCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEeccCCC
Q psy755 38 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVD 87 (183)
Q Consensus 38 ~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~ 87 (183)
.++.+.+++||+||.++..+..+. .+++++|.+|||.+...
T Consensus 194 ~~l~~~~~~ADIvIsAvGk~~~i~---------~~~ik~gavVIDvGin~ 234 (284)
T PRK14177 194 QNLPSIVRQADIIVGAVGKPEFIK---------ADWISEGAVLLDAGYNP 234 (284)
T ss_pred CCHHHHHhhCCEEEEeCCCcCccC---------HHHcCCCCEEEEecCcc
Confidence 467788999999999998865322 35688999999999754
No 215
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=96.56 E-value=0.0068 Score=40.27 Aligned_cols=98 Identities=15% Similarity=0.248 Sum_probs=59.5
Q ss_pred CcHHHHHHHHhC----CCcEE-EEcCC--chhHHHHHHcCCcccCCHHHHhc--cCCEEEEecCChHHHHHHhcCCcccc
Q psy755 1 MGSHMARNLLKN----GHDVI-VYDKN--TDASQTLAKEGANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGIL 71 (183)
Q Consensus 1 mG~~iA~~l~~~----g~~V~-~~~~~--~~~~~~~~~~g~~~~~~~~~~~~--~adiVi~~vp~~~~~~~v~~~~~~l~ 71 (183)
||+.++..|.+. +++|. +++|+ ..........+.....+++++++ ..|+||-|.+. +.....+ .
T Consensus 5 VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~-~~~~~~~------~ 77 (117)
T PF03447_consen 5 VGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSS-EAVAEYY------E 77 (117)
T ss_dssp HHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSC-HHHHHHH------H
T ss_pred HHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCc-hHHHHHH------H
Confidence 588999999877 45655 46888 11112222234566778999888 89999999765 4454443 4
Q ss_pred ccCCCCcEEEeccCCCch---hHHHHHHHHHhcCCcE
Q psy755 72 KHAKPGVIVIDSSTVDPQ---VPQTLSNLAREKQITF 105 (183)
Q Consensus 72 ~~l~~~~iiid~s~~~~~---~~~~~~~~~~~~g~~~ 105 (183)
+.|..|..||-.+...-. ....+.+..++.|.++
T Consensus 78 ~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~ 114 (117)
T PF03447_consen 78 KALERGKHVVTANKGALADEALYEELREAARKNGVRI 114 (117)
T ss_dssp HHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EE
T ss_pred HHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEE
Confidence 667899998876644333 3445555555556554
No 216
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.55 E-value=0.008 Score=46.20 Aligned_cols=41 Identities=22% Similarity=0.342 Sum_probs=32.1
Q ss_pred CCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEeccCCC
Q psy755 38 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVD 87 (183)
Q Consensus 38 ~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~ 87 (183)
.++.+.+++||+||.+++.+..++ .+++++|.+|||.+...
T Consensus 191 ~~l~~~~~~ADIvI~AvG~p~~i~---------~~~vk~GavVIDvGin~ 231 (282)
T PRK14169 191 RNLKQLTKEADILVVAVGVPHFIG---------ADAVKPGAVVIDVGISR 231 (282)
T ss_pred CCHHHHHhhCCEEEEccCCcCccC---------HHHcCCCcEEEEeeccc
Confidence 467888999999999998866322 34688999999998643
No 217
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.55 E-value=0.0096 Score=45.81 Aligned_cols=41 Identities=27% Similarity=0.298 Sum_probs=32.2
Q ss_pred CCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEeccCCC
Q psy755 38 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVD 87 (183)
Q Consensus 38 ~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~ 87 (183)
.++.+.+++||+||.++..+..++ .+++++|.+|||.+...
T Consensus 192 ~~l~~~~~~ADIvI~AvG~~~~i~---------~~~vk~GavVIDvGin~ 232 (284)
T PRK14170 192 KDLPQVAKEADILVVATGLAKFVK---------KDYIKPGAIVIDVGMDR 232 (284)
T ss_pred CCHHHHHhhCCEEEEecCCcCccC---------HHHcCCCCEEEEccCcc
Confidence 367888999999999998865322 34678999999998654
No 218
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.54 E-value=0.0082 Score=46.29 Aligned_cols=100 Identities=23% Similarity=0.269 Sum_probs=67.3
Q ss_pred cHHHHHHHHhCCC-cEEEEcCCchhHHHHHHc----CC-cccCCHHHH--hccCCEEEEecCChHHHHHHhcCCccc--c
Q psy755 2 GSHMARNLLKNGH-DVIVYDKNTDASQTLAKE----GA-NMALSLSTL--ASGAEFIISMLPASQDVLDAYDGSDGI--L 71 (183)
Q Consensus 2 G~~iA~~l~~~g~-~V~~~~~~~~~~~~~~~~----g~-~~~~~~~~~--~~~adiVi~~vp~~~~~~~v~~~~~~l--~ 71 (183)
+++++..|++.|. +|++++|+.++.+++.+. +. .......+. ..++|+||-++|.+..-... ... .
T Consensus 138 arAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm~~~~~----~~~~~~ 213 (283)
T COG0169 138 ARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVGMAGPEG----DSPVPA 213 (283)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCCCCCCCC----CCCCcH
Confidence 5788999999996 799999999998888764 21 111122221 22699999999986543210 101 3
Q ss_pred ccCCCCcEEEeccCCCchhHHHHHHHHHhcCCcEEe
Q psy755 72 KHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 107 (183)
Q Consensus 72 ~~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~ 107 (183)
..++++.++.|+--....+ .+.++.+++|...++
T Consensus 214 ~~l~~~~~v~D~vY~P~~T--plL~~A~~~G~~~id 247 (283)
T COG0169 214 ELLPKGAIVYDVVYNPLET--PLLREARAQGAKTID 247 (283)
T ss_pred HhcCcCCEEEEeccCCCCC--HHHHHHHHcCCeEEC
Confidence 4678899999988665555 355666777777666
No 219
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.54 E-value=0.0089 Score=46.30 Aligned_cols=41 Identities=17% Similarity=0.325 Sum_probs=32.2
Q ss_pred CCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEeccCCC
Q psy755 38 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVD 87 (183)
Q Consensus 38 ~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~ 87 (183)
.++.+.+++||+||.+++.+..++ .+++++|.+|||.+...
T Consensus 193 ~~l~~~~~~ADIvIsAvGkp~~i~---------~~~ik~gavVIDvGin~ 233 (297)
T PRK14186 193 QDLASITREADILVAAAGRPNLIG---------AEMVKPGAVVVDVGIHR 233 (297)
T ss_pred CCHHHHHhhCCEEEEccCCcCccC---------HHHcCCCCEEEEecccc
Confidence 467788999999999998865322 34688999999998654
No 220
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.51 E-value=0.039 Score=45.02 Aligned_cols=125 Identities=17% Similarity=0.155 Sum_probs=68.1
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
+|.++|+.|.+.|++|+++|+++......................++|+||.+.+.+.. ...+ ......|..+
T Consensus 14 ~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~-~~~l------~~A~~~g~~v 86 (418)
T PRK00683 14 TGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKE-HPWV------QAAIASHIPV 86 (418)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCC-cHHH------HHHHHCCCcE
Confidence 58899999999999999999887644321100001122333444678988888755432 2221 2233344433
Q ss_pred EeccCCCchhHHHHHHHHHhcCCcEEeecccCCHHHHhcCceEEEec--CCHHHHHHHHHHHHHhcCCeEEeCCcchH
Q psy755 81 IDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVG--GDKSSLEKAKPILKCMGRNIVHCGDSGNG 156 (183)
Q Consensus 81 id~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~l~~~~g~~~~~~g~~g~a 156 (183)
+.-+ ........ +-+ .+..-++| |...+.+.+..+|+..|......|+.|-.
T Consensus 87 v~~~-------~~~~~~~~-----~~~------------~~~I~ITGT~GKTTTt~ml~~iL~~~g~~~~~~GniG~p 140 (418)
T PRK00683 87 VTDI-------QLAFQTPE-----FTR------------YPSLGITGSTGKTTTILFLEHLLKRLGIPAFAMGNIGIP 140 (418)
T ss_pred EEHH-------HHHHhhhh-----cCC------------CCEEEEECCCChHHHHHHHHHHHHHcCCCeEEECCcCHH
Confidence 3111 11111110 000 11122333 45566778899999988877778886644
No 221
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.50 E-value=0.0097 Score=45.89 Aligned_cols=41 Identities=15% Similarity=0.317 Sum_probs=32.1
Q ss_pred CCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEeccCCC
Q psy755 38 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVD 87 (183)
Q Consensus 38 ~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~ 87 (183)
.++.+.+++||+||.++..+..+. .+++++|.+|||.+...
T Consensus 190 ~~l~~~~~~ADIvIsAvGkp~~i~---------~~~vk~GavVIDVGin~ 230 (287)
T PRK14173 190 QDLPAVTRRADVLVVAVGRPHLIT---------PEMVRPGAVVVDVGINR 230 (287)
T ss_pred CCHHHHHhhCCEEEEecCCcCccC---------HHHcCCCCEEEEccCcc
Confidence 367888999999999998865322 34678999999998654
No 222
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=96.50 E-value=0.014 Score=45.53 Aligned_cols=54 Identities=17% Similarity=0.222 Sum_probs=37.8
Q ss_pred CcHHHHHHHHhCCC-cEEEEcCCchhHHHH----HHc----C----CcccCCHHHHhccCCEEEEecC
Q psy755 1 MGSHMARNLLKNGH-DVIVYDKNTDASQTL----AKE----G----ANMALSLSTLASGAEFIISMLP 55 (183)
Q Consensus 1 mG~~iA~~l~~~g~-~V~~~~~~~~~~~~~----~~~----g----~~~~~~~~~~~~~adiVi~~vp 55 (183)
||..+|..++..|+ +|+++|+++++.+.. ... + +....+. +.+++||+||+++.
T Consensus 9 vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g 75 (300)
T cd01339 9 VGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAG 75 (300)
T ss_pred HHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecC
Confidence 68999999998877 999999998754311 111 1 1223344 45899999999884
No 223
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.48 E-value=0.0067 Score=47.18 Aligned_cols=96 Identities=20% Similarity=0.311 Sum_probs=61.1
Q ss_pred HHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHH---HHHhcC-----CccccccCC
Q psy755 4 HMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDV---LDAYDG-----SDGILKHAK 75 (183)
Q Consensus 4 ~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~---~~v~~~-----~~~l~~~l~ 75 (183)
.+++.|.+.|++|+++.-+.+..+ ..|+...++.+++++++|+|+..+|....- +..+.. .++....++
T Consensus 16 ~~~~~l~~~G~~v~~~g~~~~~~~---~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~ 92 (296)
T PRK08306 16 ELIRKLVELGAKVSLVGFDQLDHG---FTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTP 92 (296)
T ss_pred HHHHHHHHCCCEEEEEeccccccc---cCCceeeccHHHHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcC
Confidence 478899999999999775543221 226677777888899999999998863211 111000 123456788
Q ss_pred CCcEEEeccCCCchhHHHHHHHHHhcCCcEEe
Q psy755 76 PGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 107 (183)
Q Consensus 76 ~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~ 107 (183)
++++++ .+...|.. .+.+.++|+..++
T Consensus 93 ~~~~v~-~G~~~~~~----~~~~~~~gi~~~~ 119 (296)
T PRK08306 93 EHCTIF-SGIANPYL----KELAKETNRKLVE 119 (296)
T ss_pred CCCEEE-EecCCHHH----HHHHHHCCCeEEE
Confidence 998655 34444442 2455678887766
No 224
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=96.48 E-value=0.01 Score=45.97 Aligned_cols=41 Identities=22% Similarity=0.253 Sum_probs=31.7
Q ss_pred CCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEeccCCC
Q psy755 38 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVD 87 (183)
Q Consensus 38 ~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~ 87 (183)
.++++.+++||+||.++..+..++ .+++++|.+|||.+...
T Consensus 202 ~nl~~~~~~ADIvv~AvGk~~~i~---------~~~vk~gavVIDvGin~ 242 (299)
T PLN02516 202 PDPESIVREADIVIAAAGQAMMIK---------GDWIKPGAAVIDVGTNA 242 (299)
T ss_pred CCHHHHHhhCCEEEEcCCCcCccC---------HHHcCCCCEEEEeeccc
Confidence 467888999999999998753221 35688999999998644
No 225
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.47 E-value=0.0071 Score=46.43 Aligned_cols=66 Identities=20% Similarity=0.270 Sum_probs=41.2
Q ss_pred CCcEEEEcCCchhHHHH---H-HcCCc------ccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEe
Q psy755 13 GHDVIVYDKNTDASQTL---A-KEGAN------MALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVID 82 (183)
Q Consensus 13 g~~V~~~~~~~~~~~~~---~-~~g~~------~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid 82 (183)
|.+|++.+||......+ . ..+.. .+.++.+.+++||+||.+++.+.- + . ...+++|.+|||
T Consensus 152 Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~~~~~~ADIvI~Avgk~~l----v---~--~~~vk~GavVID 222 (279)
T PRK14178 152 GKRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLKAELRQADILVSAAGKAGF----I---T--PDMVKPGATVID 222 (279)
T ss_pred CCEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHHHHHhhCCEEEECCCcccc----c---C--HHHcCCCcEEEE
Confidence 34666667665543331 1 22221 123577889999999999976532 2 1 234689999999
Q ss_pred ccCCC
Q psy755 83 SSTVD 87 (183)
Q Consensus 83 ~s~~~ 87 (183)
.+...
T Consensus 223 Vgi~~ 227 (279)
T PRK14178 223 VGINQ 227 (279)
T ss_pred eeccc
Confidence 99643
No 226
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=96.46 E-value=0.0091 Score=49.69 Aligned_cols=80 Identities=19% Similarity=0.301 Sum_probs=57.0
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcc--cC---------------C----------HHHHhccCCEEEEec
Q psy755 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANM--AL---------------S----------LSTLASGAEFIISML 54 (183)
Q Consensus 2 G~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~--~~---------------~----------~~~~~~~adiVi~~v 54 (183)
|...+..+...|..|+++|+++++.+.+...|... .+ + +.+.++++|+||.++
T Consensus 176 Gl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~Ta 255 (511)
T TIGR00561 176 GLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTA 255 (511)
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECc
Confidence 56667777888999999999999888877766432 00 0 334467899999998
Q ss_pred -----CChHHHHHHhcCCccccccCCCCcEEEeccCCC
Q psy755 55 -----PASQDVLDAYDGSDGILKHAKPGVIVIDSSTVD 87 (183)
Q Consensus 55 -----p~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~ 87 (183)
|.| .++. ++....+++|.+|+|.+...
T Consensus 256 lipG~~aP----~Lit--~emv~~MKpGsvIVDlA~d~ 287 (511)
T TIGR00561 256 LIPGKPAP----KLIT--EEMVDSMKAGSVIVDLAAEQ 287 (511)
T ss_pred ccCCCCCC----eeeh--HHHHhhCCCCCEEEEeeeCC
Confidence 332 2221 55567889999999988643
No 227
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.44 E-value=0.01 Score=45.53 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=31.4
Q ss_pred CCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEeccCC
Q psy755 38 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 86 (183)
Q Consensus 38 ~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~ 86 (183)
.++.+.+++||+||.++..+..+. .+++++|.+|||.+..
T Consensus 193 ~~l~~~~~~ADIvIsAvGkp~~i~---------~~~ik~gavVIDvGin 232 (278)
T PRK14172 193 KNLKEVCKKADILVVAIGRPKFID---------EEYVKEGAIVIDVGTS 232 (278)
T ss_pred CCHHHHHhhCCEEEEcCCCcCccC---------HHHcCCCcEEEEeecc
Confidence 467888999999999998865322 3468899999999753
No 228
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.43 E-value=0.01 Score=45.78 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=31.3
Q ss_pred CCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEeccCC
Q psy755 38 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 86 (183)
Q Consensus 38 ~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~ 86 (183)
.++.+.+++||+||.++..+..+. .+++++|.+|||++..
T Consensus 194 ~~L~~~~~~ADIvV~AvGkp~~i~---------~~~vk~GavVIDvGin 233 (288)
T PRK14171 194 HNLSSITSKADIVVAAIGSPLKLT---------AEYFNPESIVIDVGIN 233 (288)
T ss_pred CCHHHHHhhCCEEEEccCCCCccC---------HHHcCCCCEEEEeecc
Confidence 467888999999999998765322 3467899999999853
No 229
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.43 E-value=0.0094 Score=45.89 Aligned_cols=41 Identities=22% Similarity=0.309 Sum_probs=31.4
Q ss_pred CCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEeccCCC
Q psy755 38 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVD 87 (183)
Q Consensus 38 ~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~ 87 (183)
.++.+.+++||+||.++..+..+. .+++++|.+|||.+...
T Consensus 193 ~~l~~~~~~ADIvI~AvG~p~~i~---------~~~ik~gavVIDvGi~~ 233 (284)
T PRK14190 193 KNLAELTKQADILIVAVGKPKLIT---------ADMVKEGAVVIDVGVNR 233 (284)
T ss_pred hhHHHHHHhCCEEEEecCCCCcCC---------HHHcCCCCEEEEeeccc
Confidence 367788999999999998765221 34678999999998543
No 230
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=96.41 E-value=0.014 Score=47.73 Aligned_cols=47 Identities=15% Similarity=0.247 Sum_probs=36.2
Q ss_pred HhCCCcEEEEcCCchhHHHHHHc------------CCcccCCHHHHhccCCEEEEecCC
Q psy755 10 LKNGHDVIVYDKNTDASQTLAKE------------GANMALSLSTLASGAEFIISMLPA 56 (183)
Q Consensus 10 ~~~g~~V~~~~~~~~~~~~~~~~------------g~~~~~~~~~~~~~adiVi~~vp~ 56 (183)
...|++|++||+++++.+..... .+..++++.+++++||+||+++|.
T Consensus 26 ~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ai~~ 84 (423)
T cd05297 26 ELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVINTIQV 84 (423)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEEeeEe
Confidence 45578999999999887654331 133466788999999999999984
No 231
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.41 E-value=0.011 Score=45.52 Aligned_cols=41 Identities=20% Similarity=0.270 Sum_probs=31.8
Q ss_pred CCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEeccCCC
Q psy755 38 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVD 87 (183)
Q Consensus 38 ~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~ 87 (183)
.++.+.+++||+||.+++.+..+. .+.+++|.+|||.+...
T Consensus 193 ~dl~~~~k~ADIvIsAvGkp~~i~---------~~~vk~gavVIDvGin~ 233 (282)
T PRK14180 193 TDLKSHTTKADILIVAVGKPNFIT---------ADMVKEGAVVIDVGINH 233 (282)
T ss_pred CCHHHHhhhcCEEEEccCCcCcCC---------HHHcCCCcEEEEecccc
Confidence 467778999999999998865322 24678999999998543
No 232
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.41 E-value=0.011 Score=45.54 Aligned_cols=40 Identities=13% Similarity=0.196 Sum_probs=31.0
Q ss_pred CCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEeccCC
Q psy755 38 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 86 (183)
Q Consensus 38 ~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~ 86 (183)
.++.+.+++||+||.++..+..+. .+.+++|.+|||.+..
T Consensus 199 ~~l~~~~~~ADIvv~AvG~p~~i~---------~~~vk~gavVIDvGin 238 (287)
T PRK14176 199 DDLKKYTLDADILVVATGVKHLIK---------ADMVKEGAVIFDVGIT 238 (287)
T ss_pred CCHHHHHhhCCEEEEccCCccccC---------HHHcCCCcEEEEeccc
Confidence 467888999999999997765321 2367899999999864
No 233
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.40 E-value=0.011 Score=45.38 Aligned_cols=41 Identities=27% Similarity=0.250 Sum_probs=32.0
Q ss_pred CCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEeccCCC
Q psy755 38 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVD 87 (183)
Q Consensus 38 ~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~ 87 (183)
.++.+.+++||+||.++..+..+. .+.+++|.+|||.+...
T Consensus 192 ~nl~~~~~~ADIvIsAvGkp~~i~---------~~~vk~GavVIDvGin~ 232 (282)
T PRK14166 192 KDLSLYTRQADLIIVAAGCVNLLR---------SDMVKEGVIVVDVGINR 232 (282)
T ss_pred CCHHHHHhhCCEEEEcCCCcCccC---------HHHcCCCCEEEEecccc
Confidence 467888999999999998865332 34678999999998543
No 234
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=96.40 E-value=0.0035 Score=42.00 Aligned_cols=80 Identities=20% Similarity=0.221 Sum_probs=48.2
Q ss_pred CcHHHHHHHHhCCC-c-EEEEcCCchhHHHHHHc--------CCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccc
Q psy755 1 MGSHMARNLLKNGH-D-VIVYDKNTDASQTLAKE--------GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGI 70 (183)
Q Consensus 1 mG~~iA~~l~~~g~-~-V~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l 70 (183)
+|+.+.+.|.++-+ + +.++++++..-+.+... .....+...+.+.++|+||+|+|.... ++.. .
T Consensus 11 vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~-~~~~---~-- 84 (121)
T PF01118_consen 11 VGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGAS-KELA---P-- 84 (121)
T ss_dssp HHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHH-HHHH---H--
T ss_pred HHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHH-HHHH---H--
Confidence 47888888888644 4 44566666322222221 112222233445899999999987544 3332 2
Q ss_pred cccCCCCcEEEeccCCC
Q psy755 71 LKHAKPGVIVIDSSTVD 87 (183)
Q Consensus 71 ~~~l~~~~iiid~s~~~ 87 (183)
..+.+|..|||.|+..
T Consensus 85 -~~~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 85 -KLLKAGIKVIDLSGDF 100 (121)
T ss_dssp -HHHHTTSEEEESSSTT
T ss_pred -HHhhCCcEEEeCCHHH
Confidence 3367899999999865
No 235
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.36 E-value=0.012 Score=45.43 Aligned_cols=41 Identities=24% Similarity=0.292 Sum_probs=31.9
Q ss_pred CCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEeccCCC
Q psy755 38 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVD 87 (183)
Q Consensus 38 ~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~ 87 (183)
.++.+.+++||+||.++..+..++ .+++++|.+|||.+...
T Consensus 195 ~~l~~~~~~ADIvVsAvGkp~~i~---------~~~ik~gaiVIDVGin~ 235 (294)
T PRK14187 195 RDLADYCSKADILVAAVGIPNFVK---------YSWIKKGAIVIDVGINS 235 (294)
T ss_pred CCHHHHHhhCCEEEEccCCcCccC---------HHHcCCCCEEEEecccc
Confidence 467888999999999998865322 34678999999998543
No 236
>KOG3007|consensus
Probab=96.35 E-value=0.008 Score=45.55 Aligned_cols=84 Identities=19% Similarity=0.248 Sum_probs=62.4
Q ss_pred cEEEEcCCchhHHHHHHc------C----CcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEecc
Q psy755 15 DVIVYDKNTDASQTLAKE------G----ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSS 84 (183)
Q Consensus 15 ~V~~~~~~~~~~~~~~~~------g----~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s 84 (183)
+|.+|+|+.+.++.+++. . ...+.+.++++..+|||+.|++... .++| ..++++|+.|=-.+
T Consensus 166 eVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~atlste---Pilf-----gewlkpgthIdlVG 237 (333)
T KOG3007|consen 166 EVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGATLSTE---PILF-----GEWLKPGTHIDLVG 237 (333)
T ss_pred EEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEeccccCC---ceee-----eeeecCCceEeeec
Confidence 799999999988777662 1 3456678889999999999998744 4454 35788998887777
Q ss_pred CCCchhHHHHHHHHHhcCCcEEe
Q psy755 85 TVDPQVPQTLSNLAREKQITFLD 107 (183)
Q Consensus 85 ~~~~~~~~~~~~~~~~~g~~~~~ 107 (183)
+..|...+.-.+..+ .+.-|+|
T Consensus 238 sf~p~mhEcDdelIq-~a~vfVD 259 (333)
T KOG3007|consen 238 SFKPVMHECDDELIQ-SACVFVD 259 (333)
T ss_pred cCCchHHHHhHHHhh-hheEEEe
Confidence 778877665555554 5667777
No 237
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.32 E-value=0.02 Score=47.02 Aligned_cols=58 Identities=22% Similarity=0.328 Sum_probs=43.9
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHH-cCCcc-------cCCHHHH-hccCCEEEEecCChH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAK-EGANM-------ALSLSTL-ASGAEFIISMLPASQ 58 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~-~g~~~-------~~~~~~~-~~~adiVi~~vp~~~ 58 (183)
+|..++..|.+.|++|+++|+++++.+.+.+ .+... ...+.++ +.++|.|++++++..
T Consensus 11 ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~ 77 (453)
T PRK09496 11 VGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDE 77 (453)
T ss_pred HHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChH
Confidence 5889999999999999999999999888865 33211 1123333 678999999998744
No 238
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.32 E-value=0.014 Score=44.92 Aligned_cols=41 Identities=22% Similarity=0.299 Sum_probs=32.3
Q ss_pred CCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEeccCCC
Q psy755 38 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVD 87 (183)
Q Consensus 38 ~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~ 87 (183)
.++.+.+++||+||.++..+..++ .+++++|.+|||.+...
T Consensus 195 ~~l~~~~k~ADIvV~AvGkp~~i~---------~~~ik~GavVIDvGin~ 235 (284)
T PRK14193 195 RDLAAHTRRADIIVAAAGVAHLVT---------ADMVKPGAAVLDVGVSR 235 (284)
T ss_pred CCHHHHHHhCCEEEEecCCcCccC---------HHHcCCCCEEEEccccc
Confidence 467888999999999998865322 34688999999998644
No 239
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=96.29 E-value=0.033 Score=42.64 Aligned_cols=105 Identities=19% Similarity=0.310 Sum_probs=64.2
Q ss_pred CcHHHHHHHHh-CCCcEEE-EcCC-chhH----HHHHH---cCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccc
Q psy755 1 MGSHMARNLLK-NGHDVIV-YDKN-TDAS----QTLAK---EGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGI 70 (183)
Q Consensus 1 mG~~iA~~l~~-~g~~V~~-~~~~-~~~~----~~~~~---~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l 70 (183)
||+.+++.+.+ .+++++. +||+ ++.. ..+.. .++..+++++++...+|+|+.++|+... ...+
T Consensus 13 MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p~~~-~~~~------ 85 (266)
T TIGR00036 13 MGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTPEGV-LNHL------ 85 (266)
T ss_pred HHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCChHHH-HHHH------
Confidence 78999999885 4677665 6854 3221 11111 2455667888875679999999976443 3332
Q ss_pred cccCCCCcEEEeccC-CCchhHHHHHHHHHhcCCcEEeecccC
Q psy755 71 LKHAKPGVIVIDSST-VDPQVPQTLSNLAREKQITFLDAPVSG 112 (183)
Q Consensus 71 ~~~l~~~~iiid~s~-~~~~~~~~~~~~~~~~g~~~~~~~~~~ 112 (183)
...+..|+.++-.++ ..+.....+.+..++.|..++-.|-+.
T Consensus 86 ~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~NfS 128 (266)
T TIGR00036 86 KFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPNFS 128 (266)
T ss_pred HHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECccc
Confidence 355667776665444 444456666666666566666554443
No 240
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.27 E-value=0.011 Score=45.68 Aligned_cols=62 Identities=24% Similarity=0.328 Sum_probs=45.6
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEE
Q psy755 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVI 81 (183)
Q Consensus 2 G~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iii 81 (183)
|++++..|.+.|.+|+++++.. .++.+.++++|+||.+++.+.. + + .+.+++|.+++
T Consensus 172 Gkpia~~L~~~gatVtv~~~~t--------------~~L~~~~~~aDIvI~AtG~~~~----v---~--~~~lk~gavVi 228 (283)
T PRK14192 172 GKPMAMMLLNANATVTICHSRT--------------QNLPELVKQADIIVGAVGKPEL----I---K--KDWIKQGAVVV 228 (283)
T ss_pred HHHHHHHHHhCCCEEEEEeCCc--------------hhHHHHhccCCEEEEccCCCCc----C---C--HHHcCCCCEEE
Confidence 6788888888888888887622 2456667899999999975442 2 1 24578999999
Q ss_pred eccCC
Q psy755 82 DSSTV 86 (183)
Q Consensus 82 d~s~~ 86 (183)
|....
T Consensus 229 Dvg~n 233 (283)
T PRK14192 229 DAGFH 233 (283)
T ss_pred EEEEe
Confidence 98854
No 241
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.26 E-value=0.016 Score=44.62 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=31.5
Q ss_pred CCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEeccCCC
Q psy755 38 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVD 87 (183)
Q Consensus 38 ~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~ 87 (183)
.++.+.+++||+||.+++.+..+. .+++++|.+|||.+...
T Consensus 192 ~nl~~~~~~ADIvI~AvGk~~~i~---------~~~ik~gaiVIDvGin~ 232 (282)
T PRK14182 192 ADLAGEVGRADILVAAIGKAELVK---------GAWVKEGAVVIDVGMNR 232 (282)
T ss_pred CCHHHHHhhCCEEEEecCCcCccC---------HHHcCCCCEEEEeecee
Confidence 467788899999999998754322 34688999999998543
No 242
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=96.24 E-value=0.015 Score=46.17 Aligned_cols=40 Identities=28% Similarity=0.312 Sum_probs=31.7
Q ss_pred CCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEeccCC
Q psy755 38 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 86 (183)
Q Consensus 38 ~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~ 86 (183)
.++.+.+++||+||.++..+..++ .+++++|.+|||.+..
T Consensus 266 ~nl~~~~r~ADIVIsAvGkp~~i~---------~d~vK~GAvVIDVGIn 305 (364)
T PLN02616 266 KNPEEITREADIIISAVGQPNMVR---------GSWIKPGAVVIDVGIN 305 (364)
T ss_pred CCHHHHHhhCCEEEEcCCCcCcCC---------HHHcCCCCEEEecccc
Confidence 467888999999999998865322 3468899999998854
No 243
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=96.23 E-value=0.094 Score=38.85 Aligned_cols=104 Identities=13% Similarity=0.198 Sum_probs=65.5
Q ss_pred CCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEeccCCCchhHHHHHHHHHhcCCcEEe-eccc
Q psy755 33 GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD-APVS 111 (183)
Q Consensus 33 g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~-~~~~ 111 (183)
|+..+++..+++.++|+|+.=.|.+..-..++ +.+.+.+++|.++.+.++........+-+...+...+..+ +|
T Consensus 126 g~~vttddreavedad~iitwlpkg~~qpdii---kkfiddipegaivthactipttkf~kifed~gredlnvtsyhp-- 200 (343)
T COG4074 126 GIVVTTDDREAVEDADMIITWLPKGGVQPDII---KKFIDDIPEGAIVTHACTIPTTKFKKIFEDMGREDLNVTSYHP-- 200 (343)
T ss_pred eeEEecCcHhhhcCCCeEEEeccCCCCCccHH---HHHHhcCCCCceEeeecccchHHHHHHHHHhCccccceeccCC--
Confidence 46667788888999999999999876556666 7778889999999999887655544444333322222222 11
Q ss_pred CCHHHHhcCceEEEec--CCHHHHHHHHHHHHHh
Q psy755 112 GGTKAAQEATLTFMVG--GDKSSLEKAKPILKCM 143 (183)
Q Consensus 112 ~~~~~~~~~~~~~~~~--g~~~~~~~~~~l~~~~ 143 (183)
+..+--.|. +++.. .++++++.+.++=+..
T Consensus 201 -g~vpemkgq-vyiaegyaseeavn~lyelg~ka 232 (343)
T COG4074 201 -GTVPEMKGQ-VYIAEGYASEEAVNALYELGEKA 232 (343)
T ss_pred -CCCccccCc-EEEecccccHHHHHHHHHHHHHh
Confidence 111122344 33433 3777777766665554
No 244
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.22 E-value=0.016 Score=44.47 Aligned_cols=41 Identities=22% Similarity=0.211 Sum_probs=31.8
Q ss_pred CCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEeccCCC
Q psy755 38 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVD 87 (183)
Q Consensus 38 ~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~ 87 (183)
.++.+.+++||+||.++..+.-++ .+++++|.+|||.+...
T Consensus 192 ~~l~~~~~~ADIvV~AvGkp~~i~---------~~~vk~gavvIDvGin~ 232 (281)
T PRK14183 192 KDLKAHTKKADIVIVGVGKPNLIT---------EDMVKEGAIVIDIGINR 232 (281)
T ss_pred cCHHHHHhhCCEEEEecCcccccC---------HHHcCCCcEEEEeeccc
Confidence 467788999999999998765322 34678999999998543
No 245
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=96.19 E-value=0.029 Score=43.12 Aligned_cols=100 Identities=18% Similarity=0.224 Sum_probs=63.4
Q ss_pred cHHHHHHHHhCCC-cEEEEcCCchhHHHHHHc-CCcccCCHHHHhccCCEEEEecCChHHH-HHHhcCCccc-cccCCCC
Q psy755 2 GSHMARNLLKNGH-DVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDV-LDAYDGSDGI-LKHAKPG 77 (183)
Q Consensus 2 G~~iA~~l~~~g~-~V~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~adiVi~~vp~~~~~-~~v~~~~~~l-~~~l~~~ 77 (183)
+++++..|++.|. +|++++|++++.+.+.+. +......+ ....+|+||-|+|.+..- ...- ..-+ ...++++
T Consensus 134 arAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~--~~~~~dlvINaTp~Gm~~~~~~~--~~pi~~~~l~~~ 209 (272)
T PRK12550 134 AKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDL--GGIEADILVNVTPIGMAGGPEAD--KLAFPEAEIDAA 209 (272)
T ss_pred HHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhc--ccccCCEEEECCccccCCCCccc--cCCCCHHHcCCC
Confidence 5788888999997 699999999998887654 21111111 124689999999865320 0000 0001 2346778
Q ss_pred cEEEeccCCCchhHHHHHHHHHhcCCcEEe
Q psy755 78 VIVIDSSTVDPQVPQTLSNLAREKQITFLD 107 (183)
Q Consensus 78 ~iiid~s~~~~~~~~~~~~~~~~~g~~~~~ 107 (183)
.++.|..-....+ .+.+..+++|...++
T Consensus 210 ~~v~D~vY~P~~T--~ll~~A~~~G~~~i~ 237 (272)
T PRK12550 210 SVVFDVVALPAET--PLIRYARARGKTVIT 237 (272)
T ss_pred CEEEEeecCCccC--HHHHHHHHCcCeEeC
Confidence 8999988655544 355566677877766
No 246
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=96.19 E-value=0.032 Score=41.68 Aligned_cols=97 Identities=22% Similarity=0.271 Sum_probs=60.3
Q ss_pred CcHHHHHHHHhCCCc---EEEEcCC----chhH-------HHHHHc-CC-cccCCHHHHhccCCEEEEecCChHHHHHHh
Q psy755 1 MGSHMARNLLKNGHD---VIVYDKN----TDAS-------QTLAKE-GA-NMALSLSTLASGAEFIISMLPASQDVLDAY 64 (183)
Q Consensus 1 mG~~iA~~l~~~g~~---V~~~~~~----~~~~-------~~~~~~-g~-~~~~~~~~~~~~adiVi~~vp~~~~~~~v~ 64 (183)
+|++++..|.+.|.+ |+++||+ .++. +.+.+. +. ....++.+.++++|+||-++|.+...+..
T Consensus 36 Ag~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dvlIgaT~~G~~~~~~- 114 (226)
T cd05311 36 AGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVFIGVSRPGVVKKEM- 114 (226)
T ss_pred HHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCEEEeCCCCCCCCHHH-
Confidence 478899999999974 9999999 4442 222222 11 11136767888999999999854322223
Q ss_pred cCCccccccCCCCcEEEeccCCCchhHHHHHHHHHhcCCc-EEe
Q psy755 65 DGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQIT-FLD 107 (183)
Q Consensus 65 ~~~~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~-~~~ 107 (183)
...+.++.+|.+.++-.+. ...+...+.|.. +.+
T Consensus 115 ------l~~m~~~~ivf~lsnP~~e---~~~~~A~~~ga~i~a~ 149 (226)
T cd05311 115 ------IKKMAKDPIVFALANPVPE---IWPEEAKEAGADIVAT 149 (226)
T ss_pred ------HHhhCCCCEEEEeCCCCCc---CCHHHHHHcCCcEEEe
Confidence 2344577888888844432 344445555665 444
No 247
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.17 E-value=0.0099 Score=46.43 Aligned_cols=57 Identities=18% Similarity=0.292 Sum_probs=41.3
Q ss_pred CcHHHHHHHHhCC--CcEEEEcCCchhHHHHHHc--------C--CcccCCHHHHhccCCEEEEecCCh
Q psy755 1 MGSHMARNLLKNG--HDVIVYDKNTDASQTLAKE--------G--ANMALSLSTLASGAEFIISMLPAS 57 (183)
Q Consensus 1 mG~~iA~~l~~~g--~~V~~~~~~~~~~~~~~~~--------g--~~~~~~~~~~~~~adiVi~~vp~~ 57 (183)
+|.++|..|+..| ++|+++|+++++++..... + ........+.+++||+||+++..+
T Consensus 11 vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~ 79 (306)
T cd05291 11 VGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAP 79 (306)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCC
Confidence 4889999999999 5899999999887654432 1 112223334578999999999764
No 248
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.17 E-value=0.012 Score=45.27 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=30.5
Q ss_pred CHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEeccCCC
Q psy755 39 SLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVD 87 (183)
Q Consensus 39 ~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~ 87 (183)
++.+.+++||+||.+++.+.-+. .+++++|.+|+|.+...
T Consensus 193 ~l~~~~~~ADIvV~AvG~p~~i~---------~~~vk~GavVIDvGi~~ 232 (285)
T PRK14191 193 DLSFYTQNADIVCVGVGKPDLIK---------ASMVKKGAVVVDIGINR 232 (285)
T ss_pred HHHHHHHhCCEEEEecCCCCcCC---------HHHcCCCcEEEEeeccc
Confidence 46678899999999998765322 24678999999998543
No 249
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.16 E-value=0.013 Score=41.78 Aligned_cols=54 Identities=22% Similarity=0.376 Sum_probs=42.0
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCC-------cccCCHHHHhccCCEEEEecCC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGA-------NMALSLSTLASGAEFIISMLPA 56 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~-------~~~~~~~~~~~~adiVi~~vp~ 56 (183)
+|..+++.|.+.|++|++..|++++.+. ..++ ...++..++++++|.||.+++.
T Consensus 10 vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 10 VGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred HHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 4889999999999999999999998877 3332 1112345667899999999974
No 250
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=96.16 E-value=0.019 Score=45.34 Aligned_cols=40 Identities=25% Similarity=0.293 Sum_probs=31.7
Q ss_pred CCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEeccCC
Q psy755 38 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 86 (183)
Q Consensus 38 ~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~ 86 (183)
.++.+.+++||+||.++..+..+. .+++++|.+|||.+..
T Consensus 249 ~nl~~~~~~ADIvIsAvGkp~~v~---------~d~vk~GavVIDVGin 288 (345)
T PLN02897 249 KDPEQITRKADIVIAAAGIPNLVR---------GSWLKPGAVVIDVGTT 288 (345)
T ss_pred CCHHHHHhhCCEEEEccCCcCccC---------HHHcCCCCEEEEcccc
Confidence 467888999999999998865322 3468899999999864
No 251
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=96.16 E-value=0.041 Score=42.12 Aligned_cols=106 Identities=16% Similarity=0.129 Sum_probs=62.2
Q ss_pred CcHHHHHHHHhC-CCcEEE-EcCCc--hhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCC
Q psy755 1 MGSHMARNLLKN-GHDVIV-YDKNT--DASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 76 (183)
Q Consensus 1 mG~~iA~~l~~~-g~~V~~-~~~~~--~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~ 76 (183)
||+.+++.+.+. +.++.. ++++. ++.......+...+++.+++..+.|+|+.|+|.....+.. ...+..
T Consensus 12 iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~~e~~-------~~aL~a 84 (265)
T PRK13303 12 IGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAALKEHV-------VPILKA 84 (265)
T ss_pred HHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHHHHHH-------HHHHHc
Confidence 688888888765 455543 44432 2222222225566777877745699999999875443322 345678
Q ss_pred CcEEEeccCC---CchhHHHHHHHHHhcCCc-EEeecccCC
Q psy755 77 GVIVIDSSTV---DPQVPQTLSNLAREKQIT-FLDAPVSGG 113 (183)
Q Consensus 77 ~~iiid~s~~---~~~~~~~~~~~~~~~g~~-~~~~~~~~~ 113 (183)
|+.++..+.. .+.....+.+..++.|.. ++.....++
T Consensus 85 Gk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v~sga~gg 125 (265)
T PRK13303 85 GIDCAVISVGALADEALRERLEQAAEAGGARLHLLSGAIGG 125 (265)
T ss_pred CCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEEeChHhhC
Confidence 8877765543 233345666667676754 343333343
No 252
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.07 E-value=0.022 Score=43.96 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=32.0
Q ss_pred CCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEeccCCC
Q psy755 38 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVD 87 (183)
Q Consensus 38 ~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~ 87 (183)
.++.+.+++||+||.+++.+..++ .+++++|.+|||.+...
T Consensus 192 ~~l~~~~~~ADIvV~AvG~p~~i~---------~~~ik~GavVIDvGin~ 232 (287)
T PRK14181 192 ENLTEILKTADIIIAAIGVPLFIK---------EEMIAEKAVIVDVGTSR 232 (287)
T ss_pred CCHHHHHhhCCEEEEccCCcCccC---------HHHcCCCCEEEEecccc
Confidence 467888999999999998765322 35688999999998543
No 253
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=96.04 E-value=0.011 Score=41.98 Aligned_cols=83 Identities=20% Similarity=0.272 Sum_probs=53.5
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCc---c-----------------------cCCHHHHhccCCEEEEecC
Q psy755 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKEGAN---M-----------------------ALSLSTLASGAEFIISMLP 55 (183)
Q Consensus 2 G~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~---~-----------------------~~~~~~~~~~adiVi~~vp 55 (183)
|..-+..+.+.|++|+.+|.++++.+.....+.. . ...+.+.++.+|+||.+.-
T Consensus 32 g~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~d~vI~~~~ 111 (168)
T PF01262_consen 32 GQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAEFIAPADIVIGNGL 111 (168)
T ss_dssp HHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHHHHHH-SEEEEHHH
T ss_pred HHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHHHHhhCcEEeeecc
Confidence 4566777888999999999999887776654321 1 1123456778999997542
Q ss_pred -ChHHHHHHhcCCccccccCCCCcEEEeccCC
Q psy755 56 -ASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 86 (183)
Q Consensus 56 -~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~ 86 (183)
+......++. ++....++++.+|+|.|..
T Consensus 112 ~~~~~~P~lvt--~~~~~~m~~gsvIvDis~D 141 (168)
T PF01262_consen 112 YWGKRAPRLVT--EEMVKSMKPGSVIVDISCD 141 (168)
T ss_dssp BTTSS---SBE--HHHHHTSSTTEEEEETTGG
T ss_pred cCCCCCCEEEE--hHHhhccCCCceEEEEEec
Confidence 2233444442 6666778899999999853
No 254
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.01 E-value=0.029 Score=44.16 Aligned_cols=82 Identities=16% Similarity=0.197 Sum_probs=48.9
Q ss_pred cHHHHHHHHhCCC-cEEEEcCCchhHHHHHHc-----CC---cc-cCCHHHH-hccCCEEEEecCChHHHHHHhcCCccc
Q psy755 2 GSHMARNLLKNGH-DVIVYDKNTDASQTLAKE-----GA---NM-ALSLSTL-ASGAEFIISMLPASQDVLDAYDGSDGI 70 (183)
Q Consensus 2 G~~iA~~l~~~g~-~V~~~~~~~~~~~~~~~~-----g~---~~-~~~~~~~-~~~adiVi~~vp~~~~~~~v~~~~~~l 70 (183)
|..|.+.|..+.+ ++..++.+..+-+.+.+. |. .. ..+.++. .++||+||+|+|.+...+-+ .
T Consensus 15 G~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPhg~s~~~v----~-- 88 (349)
T COG0002 15 GLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPHGVSAELV----P-- 88 (349)
T ss_pred HHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEecCchhHHHHH----H--
Confidence 6678888887754 766665443222222221 11 11 1123332 45699999999998765554 2
Q ss_pred cccCCCCcEEEeccCCCchh
Q psy755 71 LKHAKPGVIVIDSSTVDPQV 90 (183)
Q Consensus 71 ~~~l~~~~iiid~s~~~~~~ 90 (183)
..+.+|..|||+|+...-.
T Consensus 89 -~l~~~g~~VIDLSadfR~~ 107 (349)
T COG0002 89 -ELLEAGCKVIDLSADFRLK 107 (349)
T ss_pred -HHHhCCCeEEECCcccccC
Confidence 3445677799999876554
No 255
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=95.99 E-value=0.02 Score=35.91 Aligned_cols=52 Identities=27% Similarity=0.537 Sum_probs=36.9
Q ss_pred CcHHHHHHHHhC-CCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcE
Q psy755 1 MGSHMARNLLKN-GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 79 (183)
Q Consensus 1 mG~~iA~~l~~~-g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~i 79 (183)
+|..++..|.+. +.+|++||| |++|.+++.+..+.. +....+.++.+
T Consensus 34 ~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~~~~~~~------~~~~~~~~~~~ 81 (86)
T cd05191 34 VGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPAGVPVLE------EATAKINEGAV 81 (86)
T ss_pred HHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCCCCCchH------HHHHhcCCCCE
Confidence 467778888877 457888887 999999987665433 11235677888
Q ss_pred EEecc
Q psy755 80 VIDSS 84 (183)
Q Consensus 80 iid~s 84 (183)
|+|++
T Consensus 82 v~~~a 86 (86)
T cd05191 82 VIDLA 86 (86)
T ss_pred EEecC
Confidence 88863
No 256
>PTZ00117 malate dehydrogenase; Provisional
Probab=95.87 E-value=0.05 Score=42.83 Aligned_cols=53 Identities=21% Similarity=0.237 Sum_probs=37.7
Q ss_pred CcHHHHHHHHhCC-CcEEEEcCCchhHHHHHH--------cC----CcccCCHHHHhccCCEEEEec
Q psy755 1 MGSHMARNLLKNG-HDVIVYDKNTDASQTLAK--------EG----ANMALSLSTLASGAEFIISML 54 (183)
Q Consensus 1 mG~~iA~~l~~~g-~~V~~~~~~~~~~~~~~~--------~g----~~~~~~~~~~~~~adiVi~~v 54 (183)
||.+++..++..| .++++||+++++.+...- .+ +...++.+ .+++||+||++.
T Consensus 16 vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 16 IGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred HHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 6889999999888 589999999876432111 01 12234555 679999999999
No 257
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.79 E-value=0.053 Score=42.07 Aligned_cols=101 Identities=10% Similarity=0.171 Sum_probs=61.6
Q ss_pred cHHHHHHHHhCCC-cEEEEcCCch---hHHHHHHc-C----C-cccCCH------HHHhccCCEEEEecCChHHH--HHH
Q psy755 2 GSHMARNLLKNGH-DVIVYDKNTD---ASQTLAKE-G----A-NMALSL------STLASGAEFIISMLPASQDV--LDA 63 (183)
Q Consensus 2 G~~iA~~l~~~g~-~V~~~~~~~~---~~~~~~~~-g----~-~~~~~~------~~~~~~adiVi~~vp~~~~~--~~v 63 (183)
+++++..|+..|. +|++++|+++ +.+.+.+. + . ....+. .+.+.++|+||-++|.+..- ...
T Consensus 136 arAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDivINaTp~Gm~~~~~~~ 215 (288)
T PRK12749 136 STAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTKVGMKPLENES 215 (288)
T ss_pred HHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEEEECCCCCCCCCCCCC
Confidence 5677788888887 8999999964 66655442 1 1 111122 23456799999999875421 000
Q ss_pred hcCCccccccCCCCcEEEeccCCCchhHHHHHHHHHhcCCcEEe
Q psy755 64 YDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 107 (183)
Q Consensus 64 ~~~~~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~ 107 (183)
. ..-...++++.++.|+--....+ .+.+..+++|.+.++
T Consensus 216 ~---~~~~~~l~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~~ 254 (288)
T PRK12749 216 L---VNDISLLHPGLLVTECVYNPHMT--KLLQQAQQAGCKTID 254 (288)
T ss_pred C---CCcHHHCCCCCEEEEecCCCccC--HHHHHHHHCCCeEEC
Confidence 0 00012466788899988544443 455666777887777
No 258
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=95.79 E-value=0.028 Score=44.77 Aligned_cols=82 Identities=22% Similarity=0.286 Sum_probs=49.3
Q ss_pred CcHHHHHHHHhC-CCcEE-EEcCCchhHHHHHH-c----CC---ccc-CCHHHHhccCCEEEEecCChHHHHHHhcCCcc
Q psy755 1 MGSHMARNLLKN-GHDVI-VYDKNTDASQTLAK-E----GA---NMA-LSLSTLASGAEFIISMLPASQDVLDAYDGSDG 69 (183)
Q Consensus 1 mG~~iA~~l~~~-g~~V~-~~~~~~~~~~~~~~-~----g~---~~~-~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~ 69 (183)
+|..+.+.|.++ +++++ ++++.+..-+.+.. . +. ... .+..++.+++|+||+|+|.....+-+ ..
T Consensus 12 vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~s~~~~----~~ 87 (346)
T TIGR01850 12 TGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGVSAELA----PE 87 (346)
T ss_pred HHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchHHHHHH----HH
Confidence 477888888876 55777 54544322222221 1 11 111 14456656899999999986543333 32
Q ss_pred ccccCCCCcEEEeccCCCch
Q psy755 70 ILKHAKPGVIVIDSSTVDPQ 89 (183)
Q Consensus 70 l~~~l~~~~iiid~s~~~~~ 89 (183)
....|+.|||.|+...-
T Consensus 88 ---~~~~G~~VIDlS~~fR~ 104 (346)
T TIGR01850 88 ---LLAAGVKVIDLSADFRL 104 (346)
T ss_pred ---HHhCCCEEEeCChhhhc
Confidence 23578999999987543
No 259
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=95.76 E-value=0.029 Score=44.63 Aligned_cols=81 Identities=23% Similarity=0.299 Sum_probs=48.0
Q ss_pred CcHHHHHHHHhC-CCcEEE-EcCCchhHHHHHHc-----CC--cccCCHH-HHhccCCEEEEecCChHHHHHHhcCCccc
Q psy755 1 MGSHMARNLLKN-GHDVIV-YDKNTDASQTLAKE-----GA--NMALSLS-TLASGAEFIISMLPASQDVLDAYDGSDGI 70 (183)
Q Consensus 1 mG~~iA~~l~~~-g~~V~~-~~~~~~~~~~~~~~-----g~--~~~~~~~-~~~~~adiVi~~vp~~~~~~~v~~~~~~l 70 (183)
+|..+++.|.++ +++++. .++.+ ..+.+.+. +. ...++.. ...+++|+||+|+|...+.+-+ ..
T Consensus 14 vG~~l~~~L~~~p~~elv~v~~~~~-~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~~~~v----~~- 87 (343)
T PRK00436 14 TGGELLRLLLNHPEVEIVAVTSRSS-AGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVSMDLA----PQ- 87 (343)
T ss_pred HHHHHHHHHHcCCCceEEEEECccc-cCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHHHHHH----HH-
Confidence 467788888876 567655 45432 22222211 11 0122222 2456899999999997654444 22
Q ss_pred cccCCCCcEEEeccCCCch
Q psy755 71 LKHAKPGVIVIDSSTVDPQ 89 (183)
Q Consensus 71 ~~~l~~~~iiid~s~~~~~ 89 (183)
.+..|+.|||.|+...-
T Consensus 88 --a~~aG~~VID~S~~fR~ 104 (343)
T PRK00436 88 --LLEAGVKVIDLSADFRL 104 (343)
T ss_pred --HHhCCCEEEECCcccCC
Confidence 34579999999987654
No 260
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=95.76 E-value=0.036 Score=42.45 Aligned_cols=41 Identities=20% Similarity=0.363 Sum_probs=31.9
Q ss_pred CCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEeccCCC
Q psy755 38 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVD 87 (183)
Q Consensus 38 ~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~ 87 (183)
.++.+.++++|+|+.++-.+..++ .+++++|.++||.+...
T Consensus 191 ~~l~~~~k~ADIvv~AvG~p~~i~---------~d~vk~gavVIDVGinr 231 (283)
T COG0190 191 KDLASITKNADIVVVAVGKPHFIK---------ADMVKPGAVVIDVGINR 231 (283)
T ss_pred CCHHHHhhhCCEEEEecCCccccc---------cccccCCCEEEecCCcc
Confidence 467788899999999997755332 35788999999988643
No 261
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.76 E-value=0.034 Score=44.60 Aligned_cols=75 Identities=17% Similarity=0.251 Sum_probs=53.6
Q ss_pred HHHHHHHhCCCcEEEEcCCchhHHHHHHc--CCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEE
Q psy755 4 HMARNLLKNGHDVIVYDKNTDASQTLAKE--GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVI 81 (183)
Q Consensus 4 ~iA~~l~~~g~~V~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iii 81 (183)
.++..|.+.|.+|.+||.... +..... ++...++..+++++||++++++.+ ++++.+=+ +.+ +.++..|+
T Consensus 334 ~vi~~L~~~Ga~V~aYDP~a~--~~~~~~~~~~~~~~~~~~~~~~aDaivi~tew-~ef~~~d~--~~~---~m~~~~v~ 405 (414)
T COG1004 334 DIIKRLQEKGAEVIAYDPVAM--ENAFRNFPDVELESDAEEALKGADAIVINTEW-DEFRDLDF--EKL---LMKTPVVI 405 (414)
T ss_pred HHHHHHHHCCCEEEEECchhh--HHHHhcCCCceEeCCHHHHHhhCCEEEEeccH-HHHhccCh--hhh---hccCCEEE
Confidence 577889999999999995443 333322 467888999999999999999977 44555421 122 55778888
Q ss_pred eccCC
Q psy755 82 DSSTV 86 (183)
Q Consensus 82 d~s~~ 86 (183)
|.-+.
T Consensus 406 DgRni 410 (414)
T COG1004 406 DGRNI 410 (414)
T ss_pred ecccc
Confidence 86554
No 262
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.75 E-value=0.037 Score=42.87 Aligned_cols=41 Identities=29% Similarity=0.308 Sum_probs=32.2
Q ss_pred CCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEeccCCC
Q psy755 38 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVD 87 (183)
Q Consensus 38 ~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~ 87 (183)
.++.+.+++||+||.++..+..+. .+++++|.+|||.+...
T Consensus 196 ~nl~~~~~~ADIvIsAvGkp~~i~---------~~~vk~gavVIDvGin~ 236 (293)
T PRK14185 196 KNLKKECLEADIIIAALGQPEFVK---------ADMVKEGAVVIDVGTTR 236 (293)
T ss_pred CCHHHHHhhCCEEEEccCCcCccC---------HHHcCCCCEEEEecCcc
Confidence 467888999999999998865322 35688999999998643
No 263
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.74 E-value=0.04 Score=42.74 Aligned_cols=40 Identities=25% Similarity=0.268 Sum_probs=31.2
Q ss_pred CCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEeccCC
Q psy755 38 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 86 (183)
Q Consensus 38 ~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~ 86 (183)
.++.+.+++||+||.++..+..++ .+++++|.+|||.+..
T Consensus 200 ~~l~~~~~~ADIvVsAvGkp~~i~---------~~~ik~gavVIDvGin 239 (297)
T PRK14168 200 KNLARHCQRADILIVAAGVPNLVK---------PEWIKPGATVIDVGVN 239 (297)
T ss_pred cCHHHHHhhCCEEEEecCCcCccC---------HHHcCCCCEEEecCCC
Confidence 367788999999999997765322 3468899999999854
No 264
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=95.69 E-value=0.029 Score=44.38 Aligned_cols=79 Identities=19% Similarity=0.276 Sum_probs=59.8
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEE
Q psy755 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVI 81 (183)
Q Consensus 2 G~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iii 81 (183)
|+.+|.++...|.+|.+++.+|-++-.+.=.|.... ...+++..+|++|.++-.. .++. .+-...++.|.++.
T Consensus 221 GrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~-~m~~Aa~~gDifiT~TGnk----dVi~--~eh~~~MkDgaIl~ 293 (420)
T COG0499 221 GRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKTGDIFVTATGNK----DVIR--KEHFEKMKDGAILA 293 (420)
T ss_pred chHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEE-EhHHhhhcCCEEEEccCCc----CccC--HHHHHhccCCeEEe
Confidence 889999999999999999999977655554565544 7888999999999999652 3331 33345678888888
Q ss_pred eccCCC
Q psy755 82 DSSTVD 87 (183)
Q Consensus 82 d~s~~~ 87 (183)
+.+--.
T Consensus 294 N~GHFd 299 (420)
T COG0499 294 NAGHFD 299 (420)
T ss_pred cccccc
Confidence 777543
No 265
>KOG1200|consensus
Probab=95.65 E-value=0.081 Score=38.55 Aligned_cols=75 Identities=20% Similarity=0.318 Sum_probs=51.0
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHc-CCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 79 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~i 79 (183)
||++++..|+++|++|.+.|++...++..... +.. -....-.|| |.+..+++..+ ++..+.+....+
T Consensus 26 IGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g~----~~h~aF~~D-----VS~a~~v~~~l---~e~~k~~g~psv 93 (256)
T KOG1200|consen 26 IGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGGY----GDHSAFSCD-----VSKAHDVQNTL---EEMEKSLGTPSV 93 (256)
T ss_pred HHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCCC----Cccceeeec-----cCcHHHHHHHH---HHHHHhcCCCcE
Confidence 68999999999999999999888866655443 211 011122344 34556677766 677777777778
Q ss_pred EEeccCCC
Q psy755 80 VIDSSTVD 87 (183)
Q Consensus 80 iid~s~~~ 87 (183)
+++|....
T Consensus 94 lVncAGIt 101 (256)
T KOG1200|consen 94 LVNCAGIT 101 (256)
T ss_pred EEEcCccc
Confidence 88877653
No 266
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=95.64 E-value=0.021 Score=38.35 Aligned_cols=79 Identities=18% Similarity=0.262 Sum_probs=52.3
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcc-----cCCHHH----Hhc--cCCEEEEecCChHHHHHHhcCCcc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANM-----ALSLST----LAS--GAEFIISMLPASQDVLDAYDGSDG 69 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~-----~~~~~~----~~~--~adiVi~~vp~~~~~~~v~~~~~~ 69 (183)
+|...++.++..|.+|++.++++++.+.+.+.|... ..+..+ ... ..|+||.|+..+..++..+
T Consensus 2 vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~----- 76 (130)
T PF00107_consen 2 VGLMAIQLAKAMGAKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAI----- 76 (130)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHH-----
T ss_pred hHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCcHHHHHHHH-----
Confidence 366667777788999999999999999998887421 112222 222 4889999987655555543
Q ss_pred ccccCCCCcEEEeccCC
Q psy755 70 ILKHAKPGVIVIDSSTV 86 (183)
Q Consensus 70 l~~~l~~~~iiid~s~~ 86 (183)
..++++..++..+..
T Consensus 77 --~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 77 --KLLRPGGRIVVVGVY 91 (130)
T ss_dssp --HHEEEEEEEEEESST
T ss_pred --HHhccCCEEEEEEcc
Confidence 455666665555543
No 267
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.56 E-value=0.029 Score=43.90 Aligned_cols=56 Identities=21% Similarity=0.275 Sum_probs=39.8
Q ss_pred CcHHHHHHHHhCC--CcEEEEcCCchhHHH-HHHc-C-------Cc-ccCCHHHHhccCCEEEEecCCh
Q psy755 1 MGSHMARNLLKNG--HDVIVYDKNTDASQT-LAKE-G-------AN-MALSLSTLASGAEFIISMLPAS 57 (183)
Q Consensus 1 mG~~iA~~l~~~g--~~V~~~~~~~~~~~~-~~~~-g-------~~-~~~~~~~~~~~adiVi~~vp~~ 57 (183)
+|.++|..|+..| .+|+++|+++++.+. +... . .. ...+. +.+++||+||++.+.+
T Consensus 11 VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~~ 78 (308)
T cd05292 11 VGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGAN 78 (308)
T ss_pred HHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCCC
Confidence 4889999999999 589999999987653 2111 1 11 12333 5689999999999864
No 268
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.56 E-value=0.027 Score=47.04 Aligned_cols=82 Identities=16% Similarity=0.199 Sum_probs=54.3
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCccc--C-----------------CH--------HHHhccCCEEEEec
Q psy755 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMA--L-----------------SL--------STLASGAEFIISML 54 (183)
Q Consensus 2 G~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~--~-----------------~~--------~~~~~~adiVi~~v 54 (183)
|...+..+...|.+|+++|+++++.+.+.+.|.... + +. .+.++.+|+||.|+
T Consensus 177 GL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIeta 256 (509)
T PRK09424 177 GLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTA 256 (509)
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECC
Confidence 455556667789999999999999999888876521 1 10 11124699999999
Q ss_pred CChHH--HHHHhcCCccccccCCCCcEEEeccCC
Q psy755 55 PASQD--VLDAYDGSDGILKHAKPGVIVIDSSTV 86 (183)
Q Consensus 55 p~~~~--~~~v~~~~~~l~~~l~~~~iiid~s~~ 86 (183)
..+.. -.-+. ++....+++|..|+|.+..
T Consensus 257 g~pg~~aP~lit---~~~v~~mkpGgvIVdvg~~ 287 (509)
T PRK09424 257 LIPGKPAPKLIT---AEMVASMKPGSVIVDLAAE 287 (509)
T ss_pred CCCcccCcchHH---HHHHHhcCCCCEEEEEccC
Confidence 64321 11111 3445678899999998763
No 269
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.55 E-value=0.033 Score=42.94 Aligned_cols=40 Identities=23% Similarity=0.357 Sum_probs=30.6
Q ss_pred CHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEeccCCC
Q psy755 39 SLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVD 87 (183)
Q Consensus 39 ~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~ 87 (183)
++.+.+++||+||.+++.+.-+. .+++++|.+|||.+...
T Consensus 197 ~l~~~~~~ADIVI~AvG~p~li~---------~~~vk~GavVIDVGi~~ 236 (286)
T PRK14184 197 DLAEECREADFLFVAIGRPRFVT---------ADMVKPGAVVVDVGINR 236 (286)
T ss_pred hHHHHHHhCCEEEEecCCCCcCC---------HHHcCCCCEEEEeeeec
Confidence 57788999999999997755322 24568999999998543
No 270
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=95.53 E-value=0.17 Score=38.64 Aligned_cols=94 Identities=17% Similarity=0.162 Sum_probs=59.7
Q ss_pred CcHHHHHHHHhCC---CcE-EEEcCCchhHHHHHHcCCcccCCHHHH-hccCCEEEEecCChHHHHHHhcCCccccccCC
Q psy755 1 MGSHMARNLLKNG---HDV-IVYDKNTDASQTLAKEGANMALSLSTL-ASGAEFIISMLPASQDVLDAYDGSDGILKHAK 75 (183)
Q Consensus 1 mG~~iA~~l~~~g---~~V-~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~ 75 (183)
||..++..|.+.+ +++ .+|+|++++.+++.+. ...+++++++ ...+|+|+.|-.. +.+++.. .+.|.
T Consensus 13 IG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~DlVVE~A~~-~av~e~~------~~iL~ 84 (267)
T PRK13301 13 IASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR-VALLDGLPGLLAWRPDLVVEAAGQ-QAIAEHA------EGCLT 84 (267)
T ss_pred HHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc-CcccCCHHHHhhcCCCEEEECCCH-HHHHHHH------HHHHh
Confidence 5777888776532 454 4578998887777654 6677889996 6889999999965 5555543 34566
Q ss_pred CCcEEEeccCCCc---hhHHHHHHHHHhcC
Q psy755 76 PGVIVIDSSTVDP---QVPQTLSNLAREKQ 102 (183)
Q Consensus 76 ~~~iiid~s~~~~---~~~~~~~~~~~~~g 102 (183)
.|.-++-.|...- ...+.+.+..++.|
T Consensus 85 ~g~dlvv~SvGALaD~~~~~~l~~~A~~~g 114 (267)
T PRK13301 85 AGLDMIICSAGALADDALRARLIAAAEAGG 114 (267)
T ss_pred cCCCEEEEChhHhcCHHHHHHHHHHHHhCC
Confidence 6665555553322 23344444444444
No 271
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.49 E-value=0.041 Score=42.68 Aligned_cols=40 Identities=20% Similarity=0.380 Sum_probs=30.2
Q ss_pred CHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEeccCCC
Q psy755 39 SLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVD 87 (183)
Q Consensus 39 ~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~ 87 (183)
++.+.+++||+||.+++.+. ++ . .+++++|.+|||.+...
T Consensus 199 ~l~~~~~~ADIvI~Avg~~~----li---~--~~~vk~GavVIDVgi~~ 238 (295)
T PRK14174 199 DIPSYTRQADILIAAIGKAR----FI---T--ADMVKPGAVVIDVGINR 238 (295)
T ss_pred hHHHHHHhCCEEEEecCccC----cc---C--HHHcCCCCEEEEeeccc
Confidence 56788999999999997653 22 1 34568999999998543
No 272
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=95.40 E-value=0.33 Score=33.26 Aligned_cols=95 Identities=23% Similarity=0.303 Sum_probs=61.5
Q ss_pred HHHHHHhCCCcEEEEcCCchh----HHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 5 MARNLLKNGHDVIVYDKNTDA----SQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 5 iA~~l~~~g~~V~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
....|.+.||+|++=.-.=.. =+...+.|....++..++..+||+|+-.-|+.. .-...+++|+++
T Consensus 19 ~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~~----------~e~~~l~~g~~l 88 (136)
T PF05222_consen 19 DVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPSE----------EELALLKPGQTL 88 (136)
T ss_dssp HHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS---G----------GGGGGS-TTCEE
T ss_pred HHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCCH----------HHHhhcCCCcEE
Confidence 456788899999975322111 133445688888888899999999988876521 223568899998
Q ss_pred EeccCCCchhHHHHHHHHHhcCCcEEeeccc
Q psy755 81 IDSSTVDPQVPQTLSNLAREKQITFLDAPVS 111 (183)
Q Consensus 81 id~s~~~~~~~~~~~~~~~~~g~~~~~~~~~ 111 (183)
+...... ....+.+.+.++++..++.-..
T Consensus 89 i~~~~~~--~~~~~~~~l~~~~it~~a~E~i 117 (136)
T PF05222_consen 89 IGFLHPA--QNKELLEALAKKGITAFALELI 117 (136)
T ss_dssp EEE--GG--GHHHHHHHHHHCTEEEEEGGGS
T ss_pred EEeeccc--cCHHHHHHHHHCCCEEEEhhhC
Confidence 8555444 4556677777888888885433
No 273
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=95.37 E-value=0.076 Score=44.76 Aligned_cols=102 Identities=15% Similarity=0.154 Sum_probs=63.6
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHc-CC--cccCCHHHH-hccCCEEEEecCChHHHHHHhcCCccc-cccCC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKE-GA--NMALSLSTL-ASGAEFIISMLPASQDVLDAYDGSDGI-LKHAK 75 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~-g~--~~~~~~~~~-~~~adiVi~~vp~~~~~~~v~~~~~~l-~~~l~ 75 (183)
+|++++..|++.|++|++++|+.++.+.+.+. +. ....+..+. ...+|+|+-++|.+.....- ...+ ...++
T Consensus 390 agrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vGm~~~~~---~~pl~~~~l~ 466 (529)
T PLN02520 390 AGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVGMQPNVD---ETPISKHALK 466 (529)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCCCCCCCC---CCcccHhhCC
Confidence 47899999999999999999999988877653 21 112222222 23578888888765321100 0001 12466
Q ss_pred CCcEEEeccCCCchhHHHHHHHHHhcCCcEEe
Q psy755 76 PGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 107 (183)
Q Consensus 76 ~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~ 107 (183)
+..+++|..-....+ .+.+..+++|+..++
T Consensus 467 ~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~~ 496 (529)
T PLN02520 467 HYSLVFDAVYTPKIT--RLLREAEESGAIIVS 496 (529)
T ss_pred CCCEEEEeccCCCcC--HHHHHHHHCCCeEeC
Confidence 778899988655544 345555667776666
No 274
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=95.29 E-value=0.097 Score=39.31 Aligned_cols=77 Identities=17% Similarity=0.195 Sum_probs=55.4
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
+|.++|+.|++.|++|++..|..++++.+...- .+ ..+..+.+=|.+.+.++..+ +.+.+.+.+=+++
T Consensus 18 iG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~-------~~--~~~~~~~~DVtD~~~~~~~i---~~~~~~~g~iDiL 85 (246)
T COG4221 18 IGEATARALAEAGAKVVLAARREERLEALADEI-------GA--GAALALALDVTDRAAVEAAI---EALPEEFGRIDIL 85 (246)
T ss_pred HHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhh-------cc--CceEEEeeccCCHHHHHHHH---HHHHHhhCcccEE
Confidence 589999999999999999999999998876531 11 34555666666777777766 5566666665677
Q ss_pred EeccCCCch
Q psy755 81 IDSSTVDPQ 89 (183)
Q Consensus 81 id~s~~~~~ 89 (183)
++..+..+.
T Consensus 86 vNNAGl~~g 94 (246)
T COG4221 86 VNNAGLALG 94 (246)
T ss_pred EecCCCCcC
Confidence 766655433
No 275
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.27 E-value=0.064 Score=41.63 Aligned_cols=41 Identities=15% Similarity=0.116 Sum_probs=31.6
Q ss_pred CCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEeccCCC
Q psy755 38 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVD 87 (183)
Q Consensus 38 ~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~ 87 (183)
.++.+.+++||+||.++..+..+. .+++++|.+|||.+...
T Consensus 196 ~~l~~~~~~ADIvIsAvGkp~~i~---------~~~ik~gaiVIDvGin~ 236 (297)
T PRK14167 196 DDLAAKTRRADIVVAAAGVPELID---------GSMLSEGATVIDVGINR 236 (297)
T ss_pred CCHHHHHhhCCEEEEccCCcCccC---------HHHcCCCCEEEEccccc
Confidence 467788999999999997765321 35688999999998543
No 276
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=95.22 E-value=0.075 Score=40.60 Aligned_cols=32 Identities=31% Similarity=0.609 Sum_probs=29.1
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKE 32 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~ 32 (183)
+|..+|+.|+++|++|++..|+.++++++.++
T Consensus 18 IG~~~A~~lA~~g~~liLvaR~~~kL~~la~~ 49 (265)
T COG0300 18 IGAELAKQLARRGYNLILVARREDKLEALAKE 49 (265)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHH
Confidence 58999999999999999999999999887653
No 277
>PRK14982 acyl-ACP reductase; Provisional
Probab=95.19 E-value=0.037 Score=43.86 Aligned_cols=97 Identities=21% Similarity=0.290 Sum_probs=62.0
Q ss_pred CcHHHHHHHHhC-C-CcEEEEcCCchhHHHHHHc-CCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCC
Q psy755 1 MGSHMARNLLKN-G-HDVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPG 77 (183)
Q Consensus 1 mG~~iA~~l~~~-g-~~V~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~ 77 (183)
||+.+++.|.+. | .++++++|+++++..+... +.....++.+.+.++|+|+.++..+..+ ++ + ...+.++
T Consensus 167 IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~~~~--~I---~--~~~l~~~ 239 (340)
T PRK14982 167 IGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMPKGV--EI---D--PETLKKP 239 (340)
T ss_pred HHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCCcCC--cC---C--HHHhCCC
Confidence 688999999754 5 4899999998888776554 2122235778889999999998654321 11 1 1345788
Q ss_pred cEEEeccCCCchhHHHHHHHHHhcCCcEEeec
Q psy755 78 VIVIDSSTVDPQVPQTLSNLAREKQITFLDAP 109 (183)
Q Consensus 78 ~iiid~s~~~~~~~~~~~~~~~~~g~~~~~~~ 109 (183)
.+++|.+--.-.+. .+ .+.++++++..
T Consensus 240 ~~viDiAvPRDVd~-~v----~~~~V~v~~gG 266 (340)
T PRK14982 240 CLMIDGGYPKNLDT-KV----QGPGIHVLKGG 266 (340)
T ss_pred eEEEEecCCCCCCc-cc----CCCCEEEEeCC
Confidence 99999885332221 11 12566776633
No 278
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=95.19 E-value=0.12 Score=40.21 Aligned_cols=98 Identities=14% Similarity=0.151 Sum_probs=60.4
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchh-HHHHHHcCCcccCCHHHHhcc--CCEEEEecCChHHHHHHhcCCccccccCCCCc
Q psy755 2 GSHMARNLLKNGHDVIVYDKNTDA-SQTLAKEGANMALSLSTLASG--AEFIISMLPASQDVLDAYDGSDGILKHAKPGV 78 (183)
Q Consensus 2 G~~iA~~l~~~g~~V~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~--adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ 78 (183)
|..+.++|.+.|++ .+|-.+|.. .+.. .|...+.++.|+-.. .|++++++|... +..++ ++.... .-+.
T Consensus 21 g~~~l~~l~~~g~~-~v~pVnp~~~~~~v--~G~~~y~sv~dlp~~~~~DlAvi~vp~~~-v~~~l---~e~~~~-gvk~ 92 (291)
T PRK05678 21 GTFHTEQMLAYGTN-IVGGVTPGKGGTTV--LGLPVFNTVAEAVEATGANASVIYVPPPF-AADAI---LEAIDA-GIDL 92 (291)
T ss_pred HHHHHHHHHHCCCC-EEEEECCCCCCCeE--eCeeccCCHHHHhhccCCCEEEEEcCHHH-HHHHH---HHHHHC-CCCE
Confidence 56677788888887 555444431 1111 266777888888776 899999999754 45554 554442 2223
Q ss_pred EEEeccCCCchhHHHHHHHHHhcCCcEEe
Q psy755 79 IVIDSSTVDPQVPQTLSNLAREKQITFLD 107 (183)
Q Consensus 79 iiid~s~~~~~~~~~~~~~~~~~g~~~~~ 107 (183)
.+|-++.....+.+.+.+...+.|++++.
T Consensus 93 avI~s~Gf~~~~~~~l~~~a~~~girvlG 121 (291)
T PRK05678 93 IVCITEGIPVLDMLEVKAYLERKKTRLIG 121 (291)
T ss_pred EEEECCCCCHHHHHHHHHHHHHcCCEEEC
Confidence 34444444433334677777777777665
No 279
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=95.02 E-value=0.18 Score=41.62 Aligned_cols=96 Identities=16% Similarity=0.212 Sum_probs=60.2
Q ss_pred CcHHHHHHHHhCCC--cEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCc
Q psy755 1 MGSHMARNLLKNGH--DVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 78 (183)
Q Consensus 1 mG~~iA~~l~~~g~--~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ 78 (183)
+|..+.++|.+.|| +|+..+...+.+ .|...+.++.++-...|++++++|.. .+..++ +++... .-+.
T Consensus 22 ~g~~~~~~l~~~gf~g~v~~Vnp~~~~i-----~G~~~~~sl~~lp~~~Dlavi~vp~~-~~~~~l---~e~~~~-gv~~ 91 (447)
T TIGR02717 22 VGYAIMKNLIEGGYKGKIYPVNPKAGEI-----LGVKAYPSVLEIPDPVDLAVIVVPAK-YVPQVV---EECGEK-GVKG 91 (447)
T ss_pred hHHHHHHHHHhCCCCCcEEEECCCCCcc-----CCccccCCHHHCCCCCCEEEEecCHH-HHHHHH---HHHHhc-CCCE
Confidence 36778888999998 565555443321 36777888888877889999999874 455555 555442 2333
Q ss_pred EEEeccCCCch-------hHHHHHHHHHhcCCcEEe
Q psy755 79 IVIDSSTVDPQ-------VPQTLSNLAREKQITFLD 107 (183)
Q Consensus 79 iiid~s~~~~~-------~~~~~~~~~~~~g~~~~~ 107 (183)
+++- |+..+. ..+.+.+..++.|++++.
T Consensus 92 ~vi~-s~gf~e~g~~g~~~~~~l~~~a~~~girvlG 126 (447)
T TIGR02717 92 AVVI-TAGFKEVGEEGAELEQELVEIARKYGMRLLG 126 (447)
T ss_pred EEEE-CCCccccCcchHHHHHHHHHHHHHcCCEEEe
Confidence 4443 332221 234566666666777665
No 280
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.02 E-value=0.028 Score=43.72 Aligned_cols=87 Identities=21% Similarity=0.327 Sum_probs=58.7
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchhHHHHHHc-C--Ccc-c---CCHHHHhccCCEEEEec--CChHHHHHHhcCCccccc
Q psy755 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKE-G--ANM-A---LSLSTLASGAEFIISML--PASQDVLDAYDGSDGILK 72 (183)
Q Consensus 2 G~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~-g--~~~-~---~~~~~~~~~adiVi~~v--p~~~~~~~v~~~~~~l~~ 72 (183)
|..-|+-....|-+|++.|+|.++++.+-.. + +.. . ..+++.+..+|+||-+| |...+-+-+. +++..
T Consensus 180 gtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgakaPkLvt---~e~vk 256 (371)
T COG0686 180 GTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAPKLVT---REMVK 256 (371)
T ss_pred cchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCCceehh---HHHHH
Confidence 4444555566678999999999988776554 2 222 2 24567788999999887 4433323332 77778
Q ss_pred cCCCCcEEEeccCCCchhH
Q psy755 73 HAKPGVIVIDSSTVDPQVP 91 (183)
Q Consensus 73 ~l~~~~iiid~s~~~~~~~ 91 (183)
.+++|.+|||..-......
T Consensus 257 ~MkpGsVivDVAiDqGGc~ 275 (371)
T COG0686 257 QMKPGSVIVDVAIDQGGCF 275 (371)
T ss_pred hcCCCcEEEEEEEcCCCce
Confidence 8999999999876544443
No 281
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.99 E-value=0.1 Score=41.21 Aligned_cols=72 Identities=19% Similarity=0.202 Sum_probs=47.3
Q ss_pred HHHHHHh-CCCcEEEEcCCchhHHHHHHcCCcc-cC----CH-HHHhccCCEEEEecCChHHHHHHhcCCccccccCCCC
Q psy755 5 MARNLLK-NGHDVIVYDKNTDASQTLAKEGANM-AL----SL-STLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPG 77 (183)
Q Consensus 5 iA~~l~~-~g~~V~~~~~~~~~~~~~~~~g~~~-~~----~~-~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~ 77 (183)
+|..+++ .|.+|+++||++++.+.+.+.|... .+ +. +++-+.+|+|+.+++ +..+...+ +.++++
T Consensus 181 ~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~~~~l-------~~l~~~ 252 (339)
T COG1064 181 MAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATLEPSL-------KALRRG 252 (339)
T ss_pred HHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhHHHHH-------HHHhcC
Confidence 4555555 7899999999999999999887532 11 11 222223999999998 66665553 445555
Q ss_pred cEEEecc
Q psy755 78 VIVIDSS 84 (183)
Q Consensus 78 ~iiid~s 84 (183)
-.++-.+
T Consensus 253 G~~v~vG 259 (339)
T COG1064 253 GTLVLVG 259 (339)
T ss_pred CEEEEEC
Confidence 5554444
No 282
>KOG2741|consensus
Probab=94.97 E-value=0.24 Score=39.04 Aligned_cols=90 Identities=14% Similarity=0.240 Sum_probs=63.8
Q ss_pred CCcEE-EEcCCchhHHHHHHc-CC---cccCCHHHHhccC--CEEEEecCChHHHHHHhcCCccccccCCCCcEEE-ecc
Q psy755 13 GHDVI-VYDKNTDASQTLAKE-GA---NMALSLSTLASGA--EFIISMLPASQDVLDAYDGSDGILKHAKPGVIVI-DSS 84 (183)
Q Consensus 13 g~~V~-~~~~~~~~~~~~~~~-g~---~~~~~~~~~~~~a--diVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iii-d~s 84 (183)
+|+|+ ++||+.+++..+++. ++ +...+.++++++. |+|.+..|.+++.+-+. ..+..|+.|+ .--
T Consensus 32 ~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~qH~evv~-------l~l~~~K~VL~EKP 104 (351)
T KOG2741|consen 32 NHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNPQHYEVVM-------LALNKGKHVLCEKP 104 (351)
T ss_pred CcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCccHHHHHH-------HHHHcCCcEEeccc
Confidence 56666 469999988887765 33 4577999999865 99999999988766553 3455666543 211
Q ss_pred -CCCchhHHHHHHHHHhcCCcEEeec
Q psy755 85 -TVDPQVPQTLSNLAREKQITFLDAP 109 (183)
Q Consensus 85 -~~~~~~~~~~~~~~~~~g~~~~~~~ 109 (183)
.........+.+..+.+|+.|+++-
T Consensus 105 la~n~~e~~~iveaA~~rgv~~meg~ 130 (351)
T KOG2741|consen 105 LAMNVAEAEEIVEAAEARGVFFMEGL 130 (351)
T ss_pred ccCCHHHHHHHHHHHHHcCcEEEeee
Confidence 2244556778888888898888843
No 283
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=94.93 E-value=0.038 Score=44.55 Aligned_cols=79 Identities=15% Similarity=0.180 Sum_probs=47.9
Q ss_pred cHHHHHHHHhC-CCcEEEEcCCchhHHHHHHcC-------CcccCCHH-HHhccCCEEEEecCChHHHHHHhcCCccccc
Q psy755 2 GSHMARNLLKN-GHDVIVYDKNTDASQTLAKEG-------ANMALSLS-TLASGAEFIISMLPASQDVLDAYDGSDGILK 72 (183)
Q Consensus 2 G~~iA~~l~~~-g~~V~~~~~~~~~~~~~~~~g-------~~~~~~~~-~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~ 72 (183)
|..+.+.|.++ .++|..+.+++..-+.+.... .....+.+ +.++++|+||+++|... ...+. +
T Consensus 51 G~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~~-s~~i~-------~ 122 (381)
T PLN02968 51 GAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHGT-TQEII-------K 122 (381)
T ss_pred HHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHHH-HHHHH-------H
Confidence 67788888887 568888766544332222111 11111222 22478999999998854 33332 3
Q ss_pred cCCCCcEEEeccCCCc
Q psy755 73 HAKPGVIVIDSSTVDP 88 (183)
Q Consensus 73 ~l~~~~iiid~s~~~~ 88 (183)
.+..|..|||.|+...
T Consensus 123 ~~~~g~~VIDlSs~fR 138 (381)
T PLN02968 123 ALPKDLKIVDLSADFR 138 (381)
T ss_pred HHhCCCEEEEcCchhc
Confidence 3457889999998643
No 284
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=94.90 E-value=0.16 Score=39.37 Aligned_cols=80 Identities=18% Similarity=0.276 Sum_probs=53.5
Q ss_pred CcHHHHHHHHhC-CCcEE-EEcCCchhH--HHHHHcCCcc-cCCHHHHhc--cCCEEEEecCChHHHHHHhcCCcccccc
Q psy755 1 MGSHMARNLLKN-GHDVI-VYDKNTDAS--QTLAKEGANM-ALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILKH 73 (183)
Q Consensus 1 mG~~iA~~l~~~-g~~V~-~~~~~~~~~--~~~~~~g~~~-~~~~~~~~~--~adiVi~~vp~~~~~~~v~~~~~~l~~~ 73 (183)
||+.++..+.+. +.++. ++|+++++. +.+.+.|+.. .++.++++. +-|+|++++|...+.+.. ...
T Consensus 12 IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~a-------~~a 84 (285)
T TIGR03215 12 IGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARHA-------RLL 84 (285)
T ss_pred HHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHHH-------HHH
Confidence 355565555543 45766 468888763 4444557654 457777775 578899999987665544 245
Q ss_pred CCCCcEEEeccCCC
Q psy755 74 AKPGVIVIDSSTVD 87 (183)
Q Consensus 74 l~~~~iiid~s~~~ 87 (183)
+..|+.++|.+...
T Consensus 85 l~aGk~VIdekPa~ 98 (285)
T TIGR03215 85 AELGKIVIDLTPAA 98 (285)
T ss_pred HHcCCEEEECCccc
Confidence 67899999888654
No 285
>PRK05569 flavodoxin; Provisional
Probab=94.90 E-value=0.76 Score=31.31 Aligned_cols=86 Identities=12% Similarity=0.054 Sum_probs=48.9
Q ss_pred HhccCCEEEEecCCh-------HHHHHHhcCCccccccCCCCcEEEeccCC--C-chhHHHHHHHHHhcCCcEEeecccC
Q psy755 43 LASGAEFIISMLPAS-------QDVLDAYDGSDGILKHAKPGVIVIDSSTV--D-PQVPQTLSNLAREKQITFLDAPVSG 112 (183)
Q Consensus 43 ~~~~adiVi~~vp~~-------~~~~~v~~~~~~l~~~l~~~~iiid~s~~--~-~~~~~~~~~~~~~~g~~~~~~~~~~ 112 (183)
.+.++|.|++..|.- ..++.++ +.+.....+|+.+.-.++. . ......+.+.+...|+.++..-
T Consensus 45 ~~~~~d~iilgsPty~~~~~~~~~~~~~~---~~l~~~~~~~K~v~~f~t~g~~~~~~~~~~~~~l~~~g~~~~~~~--- 118 (141)
T PRK05569 45 DVLEADAVAFGSPSMDNNNIEQEEMAPFL---DQFKLTPNENKKCILFGSYGWDNGEFMKLWKDRMKDYGFNVIGDL--- 118 (141)
T ss_pred HHhhCCEEEEECCCcCCCcCChHHHHHHH---HHhhccCcCCCEEEEEeCCCCCCCcHHHHHHHHHHHCCCeEeeeE---
Confidence 466899999999851 2355555 4454333356554333332 2 2344556677777787766521
Q ss_pred CHHHHhcCceEEEecCCHHHHHHHHHHHHHhc
Q psy755 113 GTKAAQEATLTFMVGGDKSSLEKAKPILKCMG 144 (183)
Q Consensus 113 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g 144 (183)
.+--..+++..++++++-+.+.
T Consensus 119 ----------~~~~~p~~~~~~~~~~~g~~l~ 140 (141)
T PRK05569 119 ----------AVNESPNKEELNSAKELGKKLA 140 (141)
T ss_pred ----------EEccCCCHHHHHHHHHHHHHHh
Confidence 1111236677777777766653
No 286
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=94.88 E-value=0.19 Score=38.95 Aligned_cols=98 Identities=17% Similarity=0.147 Sum_probs=60.8
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchh-HHHHHHcCCcccCCHHHHhcc--CCEEEEecCChHHHHHHhcCCccccccCCCCc
Q psy755 2 GSHMARNLLKNGHDVIVYDKNTDA-SQTLAKEGANMALSLSTLASG--AEFIISMLPASQDVLDAYDGSDGILKHAKPGV 78 (183)
Q Consensus 2 G~~iA~~l~~~g~~V~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~--adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ 78 (183)
|..+-..+...|++ .+|..+|.+ .+. -.|...+.++.|+-+. .|++++++|... +..++ ++.... .-+.
T Consensus 19 ~~~~~~~~~~~g~~-~v~~V~p~~~~~~--v~G~~~y~sv~dlp~~~~~Dlavi~vpa~~-v~~~l---~e~~~~-Gvk~ 90 (286)
T TIGR01019 19 GSFHTEQMLAYGTN-IVGGVTPGKGGTT--VLGLPVFDSVKEAVEETGANASVIFVPAPF-AADAI---FEAIDA-GIEL 90 (286)
T ss_pred HHHHHHHHHhCCCC-EEEEECCCCCcce--ecCeeccCCHHHHhhccCCCEEEEecCHHH-HHHHH---HHHHHC-CCCE
Confidence 45566777888888 666767762 111 1367778888887765 799999998744 55554 444432 2223
Q ss_pred EEEeccCCCchhHHHHHHHHHhcCCcEEe
Q psy755 79 IVIDSSTVDPQVPQTLSNLAREKQITFLD 107 (183)
Q Consensus 79 iiid~s~~~~~~~~~~~~~~~~~g~~~~~ 107 (183)
.||-.+.......+.+.+..++.|++++.
T Consensus 91 avIis~Gf~e~~~~~l~~~a~~~girilG 119 (286)
T TIGR01019 91 IVCITEGIPVHDMLKVKRYMEESGTRLIG 119 (286)
T ss_pred EEEECCCCCHHHHHHHHHHHHHcCCEEEC
Confidence 44433333333346777777777777665
No 287
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=94.87 E-value=0.12 Score=39.57 Aligned_cols=56 Identities=16% Similarity=0.307 Sum_probs=42.2
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhc-cCCEEEEecCC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLAS-GAEFIISMLPA 56 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~adiVi~~vp~ 56 (183)
||++|...|.+.||+|++..|++.+.+.-....+...+.+.+... .+|+||--.-.
T Consensus 10 IG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavINLAG~ 66 (297)
T COG1090 10 IGRALTARLRKGGHQVTILTRRPPKASQNLHPNVTLWEGLADALTLGIDAVINLAGE 66 (297)
T ss_pred hhHHHHHHHHhCCCeEEEEEcCCcchhhhcCccccccchhhhcccCCCCEEEECCCC
Confidence 689999999999999999999998766544434444445555555 69999977643
No 288
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.86 E-value=0.54 Score=38.60 Aligned_cols=104 Identities=18% Similarity=0.176 Sum_probs=59.9
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchh----HHHHHHcCCccc--CCHHHHhcc-CCEEEEec--CChHH-HHHHhc-----
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDA----SQTLAKEGANMA--LSLSTLASG-AEFIISML--PASQD-VLDAYD----- 65 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~----~~~~~~~g~~~~--~~~~~~~~~-adiVi~~v--p~~~~-~~~v~~----- 65 (183)
+|.++|+.|++.|++|+++|++... .+.+.+.|+... ....+.... .|+||..- |.... +.....
T Consensus 16 ~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~~~~~~~a~~~~i~v 95 (447)
T PRK02472 16 SGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYTNPMVEKALEKGIPI 95 (447)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCCCHHHHHHHHCCCcE
Confidence 4889999999999999999976532 244555565442 233444444 89888865 33222 222110
Q ss_pred -CCccccccC-CCCcEEEeccCCCchhHHHHHHHHHhcCCc
Q psy755 66 -GSDGILKHA-KPGVIVIDSSTVDPQVPQTLSNLAREKQIT 104 (183)
Q Consensus 66 -~~~~l~~~l-~~~~iiid~s~~~~~~~~~~~~~~~~~g~~ 104 (183)
+..++...+ ....+-|-.|+.+..+..-+...+...|..
T Consensus 96 ~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~ 136 (447)
T PRK02472 96 ITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGGQH 136 (447)
T ss_pred EeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCCCC
Confidence 001111122 223344566667777887777888776644
No 289
>KOG1014|consensus
Probab=94.85 E-value=0.038 Score=42.83 Aligned_cols=32 Identities=31% Similarity=0.584 Sum_probs=29.3
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKE 32 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~ 32 (183)
+|+++|+-|++.|++|++..|+++++++..++
T Consensus 61 IGKayA~eLAkrG~nvvLIsRt~~KL~~v~kE 92 (312)
T KOG1014|consen 61 IGKAYARELAKRGFNVVLISRTQEKLEAVAKE 92 (312)
T ss_pred chHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Confidence 69999999999999999999999999887663
No 290
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.84 E-value=0.15 Score=41.85 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=42.1
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHc--CCc--cc--CCHHH----HhccCCEEEEecCCh
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKE--GAN--MA--LSLST----LASGAEFIISMLPAS 57 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~--g~~--~~--~~~~~----~~~~adiVi~~vp~~ 57 (183)
+|..+++.|.+.|++|++.|+++++.+.+.+. +.. .. .+... .++++|.|++++++.
T Consensus 242 ~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 242 IGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD 308 (453)
T ss_pred HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence 37889999999999999999999998888764 321 11 12221 246899999998864
No 291
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=94.80 E-value=0.12 Score=40.42 Aligned_cols=68 Identities=19% Similarity=0.257 Sum_probs=43.2
Q ss_pred CcHHHHHHHHhCCC-cEEEE-cCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCc
Q psy755 1 MGSHMARNLLKNGH-DVIVY-DKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 78 (183)
Q Consensus 1 mG~~iA~~l~~~g~-~V~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ 78 (183)
.|.-+.+.|.++.+ ++... +++. .. ..+.++.++++|+||+|+|.....+-+ +. ....|.
T Consensus 13 ~G~el~rlL~~HP~~el~~l~s~~~----------~~-~~~~~~~~~~~D~vFlalp~~~s~~~~----~~---~~~~g~ 74 (310)
T TIGR01851 13 TGLQIRERLSGRDDIELLSIAPDRR----------KD-AAERAKLLNAADVAILCLPDDAAREAV----SL---VDNPNT 74 (310)
T ss_pred hHHHHHHHHhCCCCeEEEEEecccc----------cC-cCCHhHhhcCCCEEEECCCHHHHHHHH----HH---HHhCCC
Confidence 37788888888754 44433 2221 01 124556668899999999986544333 22 234788
Q ss_pred EEEeccCC
Q psy755 79 IVIDSSTV 86 (183)
Q Consensus 79 iiid~s~~ 86 (183)
.|||.|+.
T Consensus 75 ~VIDlSad 82 (310)
T TIGR01851 75 CIIDASTA 82 (310)
T ss_pred EEEECChH
Confidence 99999964
No 292
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=94.74 E-value=0.19 Score=39.19 Aligned_cols=79 Identities=15% Similarity=0.230 Sum_probs=53.3
Q ss_pred cHHHHHHHHhC-CCcEE-EEcCCchh--HHHHHHcCCcc-cCCHHHHhc-----cCCEEEEecCChHHHHHHhcCCcccc
Q psy755 2 GSHMARNLLKN-GHDVI-VYDKNTDA--SQTLAKEGANM-ALSLSTLAS-----GAEFIISMLPASQDVLDAYDGSDGIL 71 (183)
Q Consensus 2 G~~iA~~l~~~-g~~V~-~~~~~~~~--~~~~~~~g~~~-~~~~~~~~~-----~adiVi~~vp~~~~~~~v~~~~~~l~ 71 (183)
|+.+...+.+. +.++. ++|+++++ .+.+.+.|+.. .++.+++++ +.|+||.++|...+.+.. .
T Consensus 16 Gt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H~e~a-------~ 88 (302)
T PRK08300 16 GTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAHVRHA-------A 88 (302)
T ss_pred HHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHHHHHH-------H
Confidence 55555556654 45665 56888864 34455567765 467888874 589999999886554443 2
Q ss_pred ccCCCCcEEEeccCCC
Q psy755 72 KHAKPGVIVIDSSTVD 87 (183)
Q Consensus 72 ~~l~~~~iiid~s~~~ 87 (183)
.....|+.++|.+...
T Consensus 89 ~a~eaGk~VID~sPA~ 104 (302)
T PRK08300 89 KLREAGIRAIDLTPAA 104 (302)
T ss_pred HHHHcCCeEEECCccc
Confidence 3456899999999764
No 293
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=94.69 E-value=0.12 Score=40.78 Aligned_cols=53 Identities=19% Similarity=0.255 Sum_probs=37.5
Q ss_pred CcHHHHHHHHhCCC-cEEEEcCCchhHHH-----HHH---cC----CcccCCHHHHhccCCEEEEec
Q psy755 1 MGSHMARNLLKNGH-DVIVYDKNTDASQT-----LAK---EG----ANMALSLSTLASGAEFIISML 54 (183)
Q Consensus 1 mG~~iA~~l~~~g~-~V~~~~~~~~~~~~-----~~~---~g----~~~~~~~~~~~~~adiVi~~v 54 (183)
||..+|..++..|+ +|+++|+++++.+. ... .+ +....+. +.+++||+||++.
T Consensus 17 vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 17 IGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 68899999998896 89999999985421 111 11 2223455 5679999999977
No 294
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=94.69 E-value=0.19 Score=37.68 Aligned_cols=78 Identities=22% Similarity=0.296 Sum_probs=55.2
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchhHHHHHHc----CCc--c-cCCHHHHhc---cCCEEEE-----ecCChHHHHHHhcC
Q psy755 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKE----GAN--M-ALSLSTLAS---GAEFIIS-----MLPASQDVLDAYDG 66 (183)
Q Consensus 2 G~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~----g~~--~-~~~~~~~~~---~adiVi~-----~vp~~~~~~~v~~~ 66 (183)
|+.++..+++.|.+|++.|.+++.++-+... |+. + ..+.+|++. .-|+|++ .||+++. ++
T Consensus 70 gG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~dp~~---~~-- 144 (243)
T COG2227 70 GGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPES---FL-- 144 (243)
T ss_pred ccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccCCHHH---HH--
Confidence 5678899999999999999999988766532 433 2 445666654 5788765 4677654 33
Q ss_pred CccccccCCCCcEEEeccC
Q psy755 67 SDGILKHAKPGVIVIDSST 85 (183)
Q Consensus 67 ~~~l~~~l~~~~iiid~s~ 85 (183)
+.....+++|.+++..+-
T Consensus 145 -~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 145 -RACAKLVKPGGILFLSTI 162 (243)
T ss_pred -HHHHHHcCCCcEEEEecc
Confidence 556778888887766553
No 295
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=94.69 E-value=0.036 Score=38.23 Aligned_cols=55 Identities=18% Similarity=0.244 Sum_probs=39.6
Q ss_pred cHHHHHHHHhCCC--cEEEEcCCchhHHHHHHc----------CCcccCCHHHHhccCCEEEEecCC
Q psy755 2 GSHMARNLLKNGH--DVIVYDKNTDASQTLAKE----------GANMALSLSTLASGAEFIISMLPA 56 (183)
Q Consensus 2 G~~iA~~l~~~g~--~V~~~~~~~~~~~~~~~~----------g~~~~~~~~~~~~~adiVi~~vp~ 56 (183)
|.++|..|...+. +++++|+++++++..... .........+.+++||+|+++.-.
T Consensus 13 G~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 13 GSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGV 79 (141)
T ss_dssp HHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTST
T ss_pred HHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEeccc
Confidence 7788988888876 899999998765543221 123333566778899999999844
No 296
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=94.64 E-value=0.16 Score=41.42 Aligned_cols=75 Identities=19% Similarity=0.247 Sum_probs=49.0
Q ss_pred HHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEe
Q psy755 3 SHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVID 82 (183)
Q Consensus 3 ~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid 82 (183)
..+++.|.+.|.+|.+||..-..... . .....+++.++++++|.|++++..++ .+.+=+ +.+.+.+ +..+|+|
T Consensus 336 ~~~~~~L~~~g~~v~~~DP~~~~~~~-~--~~~~~~~~~~~~~~ad~~v~~t~~~~-~~~~~~--~~~~~~~-~~~~v~D 408 (411)
T TIGR03026 336 LDIIELLKEKGAKVKAYDPLVPEEEV-K--GLPLIDDLEEALKGADALVILTDHDE-FKDLDL--EKIKDLM-KGKVVVD 408 (411)
T ss_pred HHHHHHHHhCCCEEEEECCCCChhhh-h--hcccCCCHHHHHhCCCEEEEecCCHH-HhccCH--HHHHHhc-CCCEEEe
Confidence 45788999999999999976433211 1 11235688899999999999998854 333210 3344433 3557888
Q ss_pred cc
Q psy755 83 SS 84 (183)
Q Consensus 83 ~s 84 (183)
..
T Consensus 409 ~~ 410 (411)
T TIGR03026 409 TR 410 (411)
T ss_pred CC
Confidence 54
No 297
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=94.63 E-value=0.12 Score=40.24 Aligned_cols=56 Identities=21% Similarity=0.285 Sum_probs=39.7
Q ss_pred CcHHHHHHHHhCCC--cEEEEcCCchhHHHHHHc----------CCcccCCHHHHhccCCEEEEecCC
Q psy755 1 MGSHMARNLLKNGH--DVIVYDKNTDASQTLAKE----------GANMALSLSTLASGAEFIISMLPA 56 (183)
Q Consensus 1 mG~~iA~~l~~~g~--~V~~~~~~~~~~~~~~~~----------g~~~~~~~~~~~~~adiVi~~vp~ 56 (183)
+|.++|..|+..+. +++++|++.++++..... ......+..+.+++||+|+++.-.
T Consensus 7 VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~ 74 (299)
T TIGR01771 7 VGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGA 74 (299)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCC
Confidence 47889999988876 799999988765433221 223333455778999999998754
No 298
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=94.58 E-value=0.057 Score=42.75 Aligned_cols=78 Identities=22% Similarity=0.203 Sum_probs=46.2
Q ss_pred cHHHHHHHHhCCCc---EEEEcCCchhHHHHHHcC--CcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCC
Q psy755 2 GSHMARNLLKNGHD---VIVYDKNTDASQTLAKEG--ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 76 (183)
Q Consensus 2 G~~iA~~l~~~g~~---V~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~ 76 (183)
|..+.+.|.+.+|+ +....+.++.-+.+.-.+ ....+...+...++|+||+|+|.....+.+ + .++..
T Consensus 14 G~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g~s~~~~----~---~~~~~ 86 (334)
T PRK14874 14 GREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSVSKKYA----P---KAAAA 86 (334)
T ss_pred HHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChHHHHHHH----H---HHHhC
Confidence 77889999998875 355544433322222112 222221222347899999999886543322 2 23457
Q ss_pred CcEEEeccCC
Q psy755 77 GVIVIDSSTV 86 (183)
Q Consensus 77 ~~iiid~s~~ 86 (183)
|..|||.|+.
T Consensus 87 G~~VIDlS~~ 96 (334)
T PRK14874 87 GAVVIDNSSA 96 (334)
T ss_pred CCEEEECCch
Confidence 8899999975
No 299
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=94.56 E-value=0.18 Score=40.04 Aligned_cols=79 Identities=16% Similarity=0.224 Sum_probs=50.6
Q ss_pred CcHHHHHHHHhC-CCcEEE-EcCCchhHHHHHH-c------------------CCcccCCHHHHhccCCEEEEecCChHH
Q psy755 1 MGSHMARNLLKN-GHDVIV-YDKNTDASQTLAK-E------------------GANMALSLSTLASGAEFIISMLPASQD 59 (183)
Q Consensus 1 mG~~iA~~l~~~-g~~V~~-~~~~~~~~~~~~~-~------------------g~~~~~~~~~~~~~adiVi~~vp~~~~ 59 (183)
||+.+++.+.+. ++++++ +|++++....+.+ . ++....+.+++..++|+||.++|....
T Consensus 12 IGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDVVIdaT~~~~~ 91 (341)
T PRK04207 12 IGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADIVVDATPGGVG 91 (341)
T ss_pred HHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCEEEECCCchhh
Confidence 678888877754 567765 5767654443332 1 233345677777889999999987554
Q ss_pred HHHHhcCCccccccCCCCcEEEeccCC
Q psy755 60 VLDAYDGSDGILKHAKPGVIVIDSSTV 86 (183)
Q Consensus 60 ~~~v~~~~~~l~~~l~~~~iiid~s~~ 86 (183)
.+.. ..++..|+.+|+.++.
T Consensus 92 ~e~a-------~~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 92 AKNK-------ELYEKAGVKAIFQGGE 111 (341)
T ss_pred HHHH-------HHHHHCCCEEEEcCCC
Confidence 3332 3455677888877764
No 300
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.48 E-value=0.45 Score=39.74 Aligned_cols=103 Identities=14% Similarity=0.129 Sum_probs=60.8
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCccc--CCHHHHhccCCEEEEecCChH--H-HHHHh------cCCccc
Q psy755 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMA--LSLSTLASGAEFIISMLPASQ--D-VLDAY------DGSDGI 70 (183)
Q Consensus 2 G~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~adiVi~~vp~~~--~-~~~v~------~~~~~l 70 (183)
|.+.++.|.+.|++|+++|+++...+.+.+.|+... ....+.++++|+||.+-.-+. + ++..- .+.-++
T Consensus 24 G~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~~~a~~~gi~v~~~iel 103 (488)
T PRK03369 24 GRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVLAAAAAAGVPIWGDVEL 103 (488)
T ss_pred HHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHHHHHHHCCCcEeeHHHH
Confidence 677788889999999999988776666666676442 233455678999998763322 2 11110 000011
Q ss_pred c-cc-----CC-CCc-EEEeccCCCchhHHHHHHHHHhcCCc
Q psy755 71 L-KH-----AK-PGV-IVIDSSTVDPQVPQTLSNLAREKQIT 104 (183)
Q Consensus 71 ~-~~-----l~-~~~-iiid~s~~~~~~~~~~~~~~~~~g~~ 104 (183)
. .. +. +.+ +-|-.|+++..+..-+...+...|..
T Consensus 104 ~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g~~ 145 (488)
T PRK03369 104 AWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAGRR 145 (488)
T ss_pred hhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcCCc
Confidence 1 11 11 222 33566667777777777888776643
No 301
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=94.47 E-value=0.098 Score=38.86 Aligned_cols=56 Identities=27% Similarity=0.414 Sum_probs=43.0
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchh--HHHHHHcCCcc-------cCCHHHHhccCCEEEEecCC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDA--SQTLAKEGANM-------ALSLSTLASGAEFIISMLPA 56 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~--~~~~~~~g~~~-------~~~~~~~~~~adiVi~~vp~ 56 (183)
+|+.++..|.+.+++|.+..|++.+ .+.+.+.|+.. .+++.++++++|.||++++.
T Consensus 10 ~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 10 QGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp HHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred HHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence 3889999999999999999998753 55666666431 12445678899999999983
No 302
>PRK10206 putative oxidoreductase; Provisional
Probab=94.46 E-value=0.39 Score=38.20 Aligned_cols=87 Identities=14% Similarity=0.198 Sum_probs=55.7
Q ss_pred CCcEE-EEcCCchhHHHHHHcC-CcccCCHHHHhc--cCCEEEEecCChHHHHHHhcCCccccccCCCCcEEE-ecc-CC
Q psy755 13 GHDVI-VYDKNTDASQTLAKEG-ANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVI-DSS-TV 86 (183)
Q Consensus 13 g~~V~-~~~~~~~~~~~~~~~g-~~~~~~~~~~~~--~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iii-d~s-~~ 86 (183)
+++|+ ++|+++++.+...+.+ ....++.+++++ +.|+|++++|...+.+.+. ..+..|+.|+ +-= ..
T Consensus 27 ~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~~~~-------~al~aGkhVl~EKPla~ 99 (344)
T PRK10206 27 SWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEYAK-------RALEAGKNVLVEKPFTP 99 (344)
T ss_pred CEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHHHHHH-------HHHHcCCcEEEecCCcC
Confidence 46766 5899886653333344 556778999986 5799999999977655553 4566777654 211 12
Q ss_pred CchhHHHHHHHHHhcCCcEE
Q psy755 87 DPQVPQTLSNLAREKQITFL 106 (183)
Q Consensus 87 ~~~~~~~~~~~~~~~g~~~~ 106 (183)
.....+.+.+..++.|..+.
T Consensus 100 ~~~ea~~l~~~a~~~~~~l~ 119 (344)
T PRK10206 100 TLAEAKELFALAKSKGLTVT 119 (344)
T ss_pred CHHHHHHHHHHHHHhCCEEE
Confidence 34455666666766665543
No 303
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.43 E-value=0.47 Score=34.79 Aligned_cols=58 Identities=19% Similarity=0.203 Sum_probs=37.7
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCch-hHHHHHHcC-Cccc-CC-HHHHhccCCEEEEecCChH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTD-ASQTLAKEG-ANMA-LS-LSTLASGAEFIISMLPASQ 58 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~-~~~~~~~~g-~~~~-~~-~~~~~~~adiVi~~vp~~~ 58 (183)
||...++.|.+.|++|++++++.. .+..+...+ +... .. ..+.+.++|+||.++.++.
T Consensus 21 va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~e 82 (202)
T PRK06718 21 VAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPR 82 (202)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHH
Confidence 355677888899999999987653 334444443 2211 11 1344678999999997754
No 304
>CHL00194 ycf39 Ycf39; Provisional
Probab=94.41 E-value=0.081 Score=41.34 Aligned_cols=55 Identities=24% Similarity=0.317 Sum_probs=40.5
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCc-------ccCCHHHHhccCCEEEEecC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGAN-------MALSLSTLASGAEFIISMLP 55 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~-------~~~~~~~~~~~adiVi~~vp 55 (183)
+|+.+++.|.+.||+|++.+|++++...+...++. ..+++.++++++|+||-++.
T Consensus 12 iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 12 LGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred HHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 48899999999999999999998765544433432 12234567889999998764
No 305
>PRK05568 flavodoxin; Provisional
Probab=94.37 E-value=1.1 Score=30.61 Aligned_cols=110 Identities=13% Similarity=0.128 Sum_probs=61.5
Q ss_pred HHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCCh-------HHHHHHhcCCccccccCC
Q psy755 3 SHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPAS-------QDVLDAYDGSDGILKHAK 75 (183)
Q Consensus 3 ~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~-------~~~~~v~~~~~~l~~~l~ 75 (183)
..|+..+.+.|++|.+++.+... . ..+.++|.|++..|.- ..++..+ +.+...+
T Consensus 20 ~~i~~~~~~~g~~v~~~~~~~~~--------------~-~~~~~~d~iilgsp~y~~~~~~~~~~~~f~---~~~~~~~- 80 (142)
T PRK05568 20 NLIAEGAKENGAEVKLLNVSEAS--------------V-DDVKGADVVALGSPAMGDEVLEEGEMEPFV---ESISSLV- 80 (142)
T ss_pred HHHHHHHHHCCCeEEEEECCCCC--------------H-HHHHhCCEEEEECCccCcccccchhHHHHH---HHhhhhh-
Confidence 34555555556666666543321 1 2356899999999863 2355554 4444333
Q ss_pred CCcEEEeccC-C--CchhHHHHHHHHHhcCCcEEeecccCCHHHHhcCceEEEecCCHHHHHHHHHHHHHh
Q psy755 76 PGVIVIDSST-V--DPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCM 143 (183)
Q Consensus 76 ~~~iiid~s~-~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 143 (183)
+++.+.-.++ . .......+.+.+...|..++..++. +--..+++..++++++-+.+
T Consensus 81 ~~k~~~~f~t~G~~~~~~~~~~~~~l~~~g~~~~~~~~~------------~~~~p~~~~l~~~~~~g~~l 139 (142)
T PRK05568 81 KGKKLVLFGSYGWGDGEWMRDWVERMEGYGANLVNEGLI------------VNNTPEGEGIEKCKALGEAL 139 (142)
T ss_pred CCCEEEEEEccCCCCChHHHHHHHHHHHCCCEEeCCcEE------------EecCCCHHHHHHHHHHHHHH
Confidence 4554333232 2 2445667777777778877774321 11123567777777776655
No 306
>PRK07890 short chain dehydrogenase; Provisional
Probab=94.37 E-value=0.2 Score=37.51 Aligned_cols=30 Identities=20% Similarity=0.418 Sum_probs=25.8
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
+|..+++.|++.|++|++.+|+++..+.+.
T Consensus 17 IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 46 (258)
T PRK07890 17 LGRTLAVRAARAGADVVLAARTAERLDEVA 46 (258)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999987765543
No 307
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=94.31 E-value=0.074 Score=42.31 Aligned_cols=78 Identities=12% Similarity=0.105 Sum_probs=44.0
Q ss_pred cHHHHHHHHhCCCc---EEEE--cCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCC
Q psy755 2 GSHMARNLLKNGHD---VIVY--DKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 76 (183)
Q Consensus 2 G~~iA~~l~~~g~~---V~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~ 76 (183)
|..+.+.|.+.+|+ +... .|+..+.-..........+...+.++++|+||+|+|.....+-+ .. ....
T Consensus 20 G~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~s~~~~----~~---~~~~ 92 (344)
T PLN02383 20 GQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSISKKFG----PI---AVDK 92 (344)
T ss_pred HHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHHHHHHH----HH---HHhC
Confidence 67788888887773 3322 34433321111111122211223457899999999986543322 22 2347
Q ss_pred CcEEEeccCC
Q psy755 77 GVIVIDSSTV 86 (183)
Q Consensus 77 ~~iiid~s~~ 86 (183)
|..|||.|+.
T Consensus 93 g~~VIDlS~~ 102 (344)
T PLN02383 93 GAVVVDNSSA 102 (344)
T ss_pred CCEEEECCch
Confidence 8999999975
No 308
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=94.30 E-value=0.29 Score=36.57 Aligned_cols=98 Identities=22% Similarity=0.314 Sum_probs=60.0
Q ss_pred CcHHHHHHHHhCCCcEE-EEcC----------CchhHHHHHHc-C-------CcccCCHHHH-hccCCEEEEecCChHHH
Q psy755 1 MGSHMARNLLKNGHDVI-VYDK----------NTDASQTLAKE-G-------ANMALSLSTL-ASGAEFIISMLPASQDV 60 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~-~~~~----------~~~~~~~~~~~-g-------~~~~~~~~~~-~~~adiVi~~vp~~~~~ 60 (183)
+|+.+++.|.+.|.+|+ +.|. +.+.+.+..+. | .... +..+. -.+||+++-|.+.+.-.
T Consensus 42 VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i~~~~~Dvlip~a~~~~i~ 120 (227)
T cd01076 42 VGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEELLELDCDILIPAALENQIT 120 (227)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccceeecccEEEecCccCccC
Confidence 47889999999999988 5576 55555554443 2 1111 12222 23799999999765433
Q ss_pred HHHhcCCccccccCCCCcEEEeccCCCchhHHHHHHHHHhcCCcEEeec
Q psy755 61 LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAP 109 (183)
Q Consensus 61 ~~v~~~~~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~~~ 109 (183)
... .+.+ +=++|+...+. |.+ ....+.+.++|+.|+...
T Consensus 121 ~~~-------~~~l-~a~~I~egAN~-~~t-~~a~~~L~~rGi~~~PD~ 159 (227)
T cd01076 121 ADN-------ADRI-KAKIIVEAANG-PTT-PEADEILHERGVLVVPDI 159 (227)
T ss_pred HHH-------Hhhc-eeeEEEeCCCC-CCC-HHHHHHHHHCCCEEEChH
Confidence 333 2333 23455555544 444 567788899999888743
No 309
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=94.28 E-value=0.76 Score=35.65 Aligned_cols=140 Identities=11% Similarity=0.158 Sum_probs=76.2
Q ss_pred HHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHH---HHHhcC-----CccccccCC
Q psy755 4 HMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDV---LDAYDG-----SDGILKHAK 75 (183)
Q Consensus 4 ~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~---~~v~~~-----~~~l~~~l~ 75 (183)
-+++.|.+.|++|.+|...+.. ..+ .|+......++.++++|+||+++|....- +.++.. .+++...++
T Consensus 15 ~~~~~l~~~g~~v~~~g~~~~~-~~~--~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~ 91 (287)
T TIGR02853 15 ELIRKLEELDAKISLIGFDQLE-DGF--TGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLESTK 91 (287)
T ss_pred HHHHHHHHCCCEEEEEeccccc-ccc--ccceeecchhhhhccCCEEEECCccccCCceEecccccCCccccHHHHHhcC
Confidence 4788999999999998754310 001 15556667777789999999999953321 111100 123344555
Q ss_pred CCcEEEeccCCCchhHHHHHHHHHhcCCcEE------eecccCCHHHHh--------------cCceEEEecCCHHHHHH
Q psy755 76 PGVIVIDSSTVDPQVPQTLSNLAREKQITFL------DAPVSGGTKAAQ--------------EATLTFMVGGDKSSLEK 135 (183)
Q Consensus 76 ~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~------~~~~~~~~~~~~--------------~~~~~~~~~g~~~~~~~ 135 (183)
.+.++. ++....+. .+...++|+.+. +.+..+..+-++ .+..+.++|. ...-..
T Consensus 92 ~~~~~~--~G~~~~~l---~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~-G~iG~a 165 (287)
T TIGR02853 92 GHCTIY--VGISNPYL---EQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEHTDFTIHGSNVMVLGF-GRTGMT 165 (287)
T ss_pred CCCEEE--EecCCHHH---HHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHhcCCCCCCCEEEEEcC-hHHHHH
Confidence 544432 33333333 335667787777 333333221111 1343344443 333356
Q ss_pred HHHHHHHhcCCeEEeCC
Q psy755 136 AKPILKCMGRNIVHCGD 152 (183)
Q Consensus 136 ~~~l~~~~g~~~~~~g~ 152 (183)
+...+..+|.++++.+.
T Consensus 166 vA~~L~~~G~~V~v~~R 182 (287)
T TIGR02853 166 IARTFSALGARVFVGAR 182 (287)
T ss_pred HHHHHHHCCCEEEEEeC
Confidence 66777788887665554
No 310
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.21 E-value=0.47 Score=39.24 Aligned_cols=104 Identities=16% Similarity=0.248 Sum_probs=59.7
Q ss_pred cHHHHHHHHhCCCcEEEEcCCch-----hHHHHHHcCCccc--CCHHHHhccCCEEEEecCCh---HHHHHHhc-CC---
Q psy755 2 GSHMARNLLKNGHDVIVYDKNTD-----ASQTLAKEGANMA--LSLSTLASGAEFIISMLPAS---QDVLDAYD-GS--- 67 (183)
Q Consensus 2 G~~iA~~l~~~g~~V~~~~~~~~-----~~~~~~~~g~~~~--~~~~~~~~~adiVi~~vp~~---~~~~~v~~-~~--- 67 (183)
|.++|+.|.+.|++|.++|+++. ..+.+.+.|+... ....+.+.++|+||.+-.-+ ..+..... +.
T Consensus 26 G~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Spgi~~~~p~~~~a~~~~i~i~ 105 (458)
T PRK01710 26 NIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTPSMRIDSPELVKAKEEGAYIT 105 (458)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECCCCCCCchHHHHHHHcCCcEE
Confidence 67899999999999999997753 1234555676442 22345567899998874111 11222110 00
Q ss_pred cc--c-cccCCCCcEEEeccCCCchhHHHHHHHHHhcCCcE
Q psy755 68 DG--I-LKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITF 105 (183)
Q Consensus 68 ~~--l-~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~ 105 (183)
.+ + ....+...+-|-.|+++..+..-+...+...|...
T Consensus 106 s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~ 146 (458)
T PRK01710 106 SEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGYKT 146 (458)
T ss_pred echHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCCCE
Confidence 01 1 11111123335566667777777778887766543
No 311
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=94.16 E-value=0.25 Score=37.26 Aligned_cols=31 Identities=19% Similarity=0.463 Sum_probs=26.9
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAK 31 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~ 31 (183)
||..+++.|++.|++|++.+|++++.+.+.+
T Consensus 18 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (263)
T PRK06200 18 IGRALVERFLAEGARVAVLERSAEKLASLRQ 48 (263)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999887766544
No 312
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=94.14 E-value=0.078 Score=39.57 Aligned_cols=74 Identities=26% Similarity=0.366 Sum_probs=45.6
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccC-CCCcE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHA-KPGVI 79 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l-~~~~i 79 (183)
||.++|+.|++.|++|++.+|++++.+...+. +.+-. ..+++.+-+.+...++.++ +.+.... ..=++
T Consensus 8 iG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~-------l~~~~-~~~~~~~D~~~~~~v~~~~---~~~~~~~~g~iD~ 76 (241)
T PF13561_consen 8 IGRAIARALAEEGANVILTDRNEEKLADALEE-------LAKEY-GAEVIQCDLSDEESVEALF---DEAVERFGGRIDI 76 (241)
T ss_dssp HHHHHHHHHHHTTEEEEEEESSHHHHHHHHHH-------HHHHT-TSEEEESCTTSHHHHHHHH---HHHHHHHCSSESE
T ss_pred hHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH-------HHHHc-CCceEeecCcchHHHHHHH---HHHHhhcCCCeEE
Confidence 58999999999999999999999974332211 11101 1334444455666666665 5555554 44455
Q ss_pred EEeccC
Q psy755 80 VIDSST 85 (183)
Q Consensus 80 iid~s~ 85 (183)
+|++..
T Consensus 77 lV~~a~ 82 (241)
T PF13561_consen 77 LVNNAG 82 (241)
T ss_dssp EEEEEE
T ss_pred EEeccc
Confidence 665443
No 313
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=94.08 E-value=0.13 Score=40.17 Aligned_cols=56 Identities=18% Similarity=0.294 Sum_probs=40.5
Q ss_pred CcHHHHHHHHhCC--CcEEEEcCCchhHHHHHHc--------C-Ccc--cCCHHHHhccCCEEEEecCCh
Q psy755 1 MGSHMARNLLKNG--HDVIVYDKNTDASQTLAKE--------G-ANM--ALSLSTLASGAEFIISMLPAS 57 (183)
Q Consensus 1 mG~~iA~~l~~~g--~~V~~~~~~~~~~~~~~~~--------g-~~~--~~~~~~~~~~adiVi~~vp~~ 57 (183)
+|.++|..|+..| .+++++|+++++++..... . ... .++ .+.+++||+||++...+
T Consensus 9 VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p 77 (300)
T cd00300 9 VGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAP 77 (300)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCC
Confidence 4889999999888 4899999999876554332 1 111 233 46789999999999653
No 314
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.08 E-value=0.21 Score=41.27 Aligned_cols=104 Identities=19% Similarity=0.226 Sum_probs=58.6
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEec--CChH-----HHHHHhcCC----c--
Q psy755 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISML--PASQ-----DVLDAYDGS----D-- 68 (183)
Q Consensus 2 G~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~v--p~~~-----~~~~v~~~~----~-- 68 (183)
|.+.|+.|.+.|++|.++|+.+.....+.+.|+.......+.+.++|+||.+- |+.. .+....... .
T Consensus 21 G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~v~~a~~~gi~i~~~~ 100 (460)
T PRK01390 21 GLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWVVDLARAAGVEVIGDI 100 (460)
T ss_pred HHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHHHHHHHHcCCcEEeHH
Confidence 67889999999999999997765444455557654332223456899888633 2211 122221000 1
Q ss_pred ccc-ccCC----CCcE-EEeccCCCchhHHHHHHHHHhcCCcE
Q psy755 69 GIL-KHAK----PGVI-VIDSSTVDPQVPQTLSNLAREKQITF 105 (183)
Q Consensus 69 ~l~-~~l~----~~~i-iid~s~~~~~~~~~~~~~~~~~g~~~ 105 (183)
++. ..++ +.++ -|-.|+++..+..-+...+...|..+
T Consensus 101 ~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~g~~~ 143 (460)
T PRK01390 101 ELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREAGRDV 143 (460)
T ss_pred HHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCCe
Confidence 111 1111 2233 34555667777777777777766543
No 315
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=94.07 E-value=0.42 Score=32.72 Aligned_cols=104 Identities=21% Similarity=0.242 Sum_probs=60.6
Q ss_pred CcHHHHHHHHhCCC-cEEEEcCCchhHHHHHHc--------CCcccCCHHHHhc--cCCEEEEecCChHHHHHHhcCCcc
Q psy755 1 MGSHMARNLLKNGH-DVIVYDKNTDASQTLAKE--------GANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDG 69 (183)
Q Consensus 1 mG~~iA~~l~~~g~-~V~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~--~adiVi~~vp~~~~~~~v~~~~~~ 69 (183)
+|..+++.|++.|+ +++++|.+.-....+... |-...+...+.++ +.++-+...+.......
T Consensus 10 lGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~~~------- 82 (143)
T cd01483 10 LGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISEDN------- 82 (143)
T ss_pred HHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecChhh-------
Confidence 48899999999998 799998775433333221 2111222222221 23444444433211111
Q ss_pred ccccCCCCcEEEeccCCCchhHHHHHHHHHhcCCcEEeecccC
Q psy755 70 ILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSG 112 (183)
Q Consensus 70 l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 112 (183)
....+.+-++|++++.. +.....+.+...+.+..|+++...+
T Consensus 83 ~~~~~~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~~~g 124 (143)
T cd01483 83 LDDFLDGVDLVIDAIDN-IAVRRALNRACKELGIPVIDAGGLG 124 (143)
T ss_pred HHHHhcCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 12345567888988876 4455677778888899999976655
No 316
>PRK06139 short chain dehydrogenase; Provisional
Probab=94.05 E-value=0.23 Score=39.25 Aligned_cols=30 Identities=20% Similarity=0.437 Sum_probs=26.4
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
+|.++++.|++.|++|++.+|++++.+.+.
T Consensus 19 IG~aia~~la~~G~~Vvl~~R~~~~l~~~~ 48 (330)
T PRK06139 19 IGQATAEAFARRGARLVLAARDEEALQAVA 48 (330)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 589999999999999999999998876554
No 317
>PRK08862 short chain dehydrogenase; Provisional
Probab=94.05 E-value=0.24 Score=36.79 Aligned_cols=30 Identities=17% Similarity=0.358 Sum_probs=26.5
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
+|.++++.|++.|++|++.+|++++.+.+.
T Consensus 17 IG~aia~~la~~G~~V~~~~r~~~~l~~~~ 46 (227)
T PRK08862 17 LGRTISCHFARLGATLILCDQDQSALKDTY 46 (227)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 589999999999999999999998876654
No 318
>PRK05867 short chain dehydrogenase; Provisional
Probab=93.97 E-value=0.2 Score=37.57 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=26.1
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
+|.++++.|++.|++|++.+|++++.+.+.
T Consensus 21 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 50 (253)
T PRK05867 21 IGKRVALAYVEAGAQVAIAARHLDALEKLA 50 (253)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 589999999999999999999988766554
No 319
>PRK06182 short chain dehydrogenase; Validated
Probab=93.96 E-value=0.36 Score=36.67 Aligned_cols=30 Identities=30% Similarity=0.375 Sum_probs=26.1
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 15 iG~~la~~l~~~G~~V~~~~r~~~~l~~~~ 44 (273)
T PRK06182 15 IGKATARRLAAQGYTVYGAARRVDKMEDLA 44 (273)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988776554
No 320
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.94 E-value=0.17 Score=37.09 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=20.4
Q ss_pred CcHHHHHHHHhCCC-cEEEEcCC
Q psy755 1 MGSHMARNLLKNGH-DVIVYDKN 22 (183)
Q Consensus 1 mG~~iA~~l~~~g~-~V~~~~~~ 22 (183)
||..+|..|++.|+ +++++|.+
T Consensus 32 lGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 32 LGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHHHHHHHHHHcCCCEEEEECCC
Confidence 68999999999999 69999998
No 321
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=93.93 E-value=0.2 Score=39.37 Aligned_cols=56 Identities=18% Similarity=0.265 Sum_probs=39.4
Q ss_pred CcHHHHHHHHhCCC--cEEEEcCCchhHHHHHHc---------CCcccCCHHHHhccCCEEEEecCC
Q psy755 1 MGSHMARNLLKNGH--DVIVYDKNTDASQTLAKE---------GANMALSLSTLASGAEFIISMLPA 56 (183)
Q Consensus 1 mG~~iA~~l~~~g~--~V~~~~~~~~~~~~~~~~---------g~~~~~~~~~~~~~adiVi~~vp~ 56 (183)
.|.++|..|+..|. +++++|+++++++..... ......+..+.+++||+||++.-.
T Consensus 17 vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~ 83 (315)
T PRK00066 17 VGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGA 83 (315)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCC
Confidence 37889999998888 899999998875433221 222222344568999999998754
No 322
>PRK07478 short chain dehydrogenase; Provisional
Probab=93.82 E-value=0.27 Score=36.85 Aligned_cols=30 Identities=20% Similarity=0.350 Sum_probs=26.0
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 18 iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~ 47 (254)
T PRK07478 18 IGRAAAKLFAREGAKVVVGARRQAELDQLV 47 (254)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988766554
No 323
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.72 E-value=0.36 Score=39.67 Aligned_cols=103 Identities=17% Similarity=0.254 Sum_probs=58.0
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCc-hhH----HHHHHcCCcc--cCCHHHHhccCCEEEEecCChHHHHHHhcC-Ccc---
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNT-DAS----QTLAKEGANM--ALSLSTLASGAEFIISMLPASQDVLDAYDG-SDG--- 69 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~-~~~----~~~~~~g~~~--~~~~~~~~~~adiVi~~vp~~~~~~~v~~~-~~~--- 69 (183)
+|.++|+.|++.|++|+++|++. +.. +++.+.|+.. .+...+....+|+||.+.-....-+.+... ..+
T Consensus 16 ~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~~~~~~~a~~~~i~~ 95 (450)
T PRK14106 16 SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLDSPPVVQAHKKGIEV 95 (450)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCCCHHHHHHHHCCCcE
Confidence 47899999999999999999875 333 3333335432 223334557899999987432211111000 000
Q ss_pred ------ccccCCCCcEEEeccCCCchhHHHHHHHHHhcCC
Q psy755 70 ------ILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQI 103 (183)
Q Consensus 70 ------l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~ 103 (183)
+....+...+-|-.|+++..+..-+...+...|.
T Consensus 96 ~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~~g~ 135 (450)
T PRK14106 96 IGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKNAGR 135 (450)
T ss_pred EeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcCC
Confidence 1111222223355556677777777777776553
No 324
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=93.72 E-value=0.13 Score=39.30 Aligned_cols=55 Identities=25% Similarity=0.424 Sum_probs=38.6
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcc--cCCHHHHhccCCEEEEecC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANM--ALSLSTLASGAEFIISMLP 55 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~adiVi~~vp 55 (183)
+|+.+++.|++.|++|++.+|++...+.....+... .....+.+.++|+||-+..
T Consensus 10 iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvh~a~ 66 (292)
T TIGR01777 10 IGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEALEGADAVINLAG 66 (292)
T ss_pred hhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhcCCCCEEEECCC
Confidence 589999999999999999999887654322121111 1234456678999998874
No 325
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=93.72 E-value=0.27 Score=36.78 Aligned_cols=30 Identities=33% Similarity=0.496 Sum_probs=25.7
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 16 iG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 45 (258)
T PRK12429 16 IGLEIALALAKEGAKVVIADLNDEAAAAAA 45 (258)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 488999999999999999999988766543
No 326
>PRK08265 short chain dehydrogenase; Provisional
Probab=93.71 E-value=0.31 Score=36.82 Aligned_cols=31 Identities=29% Similarity=0.511 Sum_probs=26.4
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAK 31 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~ 31 (183)
+|.++++.|++.|++|++.+|++++.+.+.+
T Consensus 18 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (261)
T PRK08265 18 IGAAVARALVAAGARVAIVDIDADNGAAVAA 48 (261)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999877665543
No 327
>KOG1502|consensus
Probab=93.71 E-value=0.15 Score=40.06 Aligned_cols=54 Identities=19% Similarity=0.187 Sum_probs=40.9
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHH---HHHc------------CCcccCCHHHHhccCCEEEEec
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQT---LAKE------------GANMALSLSTLASGAEFIISML 54 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~---~~~~------------g~~~~~~~~~~~~~adiVi~~v 54 (183)
+|+-|...|++.||+|.+.-|+++.-+. +.+. .+...++..+++++||.||=+-
T Consensus 18 Igswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH~A 86 (327)
T KOG1502|consen 18 IGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFHTA 86 (327)
T ss_pred HHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEEeC
Confidence 4788999999999999999999987333 3332 1233457788999999999665
No 328
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=93.69 E-value=0.2 Score=38.32 Aligned_cols=56 Identities=13% Similarity=0.045 Sum_probs=37.3
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcC----CcccCCHHHHh------cc-CCEEEEecCC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEG----ANMALSLSTLA------SG-AEFIISMLPA 56 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g----~~~~~~~~~~~------~~-adiVi~~vp~ 56 (183)
+|+.+++.|.+.|++|.+..|++++........ ....+++.+++ +. +|.|+++.|.
T Consensus 11 iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~ 77 (285)
T TIGR03649 11 TASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPP 77 (285)
T ss_pred HHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCC
Confidence 488999999999999999999987543210001 11122344455 45 8999988764
No 329
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.67 E-value=1 Score=37.72 Aligned_cols=52 Identities=23% Similarity=0.249 Sum_probs=34.9
Q ss_pred cHHHHHHHHhCCCcEEEEcCCch--hHHHHHHc--CCccc--CCHHHHhccCCEEEEe
Q psy755 2 GSHMARNLLKNGHDVIVYDKNTD--ASQTLAKE--GANMA--LSLSTLASGAEFIISM 53 (183)
Q Consensus 2 G~~iA~~l~~~g~~V~~~~~~~~--~~~~~~~~--g~~~~--~~~~~~~~~adiVi~~ 53 (183)
|.++|+.|.+.|++|+++|.... ..+.+.+. |+... ....+.+.++|+||..
T Consensus 19 G~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~s 76 (498)
T PRK02006 19 GLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALS 76 (498)
T ss_pred HHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEEC
Confidence 77899999999999999996543 22344444 33321 1234556678988886
No 330
>PRK06180 short chain dehydrogenase; Provisional
Probab=93.62 E-value=0.33 Score=37.01 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=26.6
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAK 31 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~ 31 (183)
+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 16 iG~~la~~l~~~G~~V~~~~r~~~~~~~l~~ 46 (277)
T PRK06180 16 FGRALAQAALAAGHRVVGTVRSEAARADFEA 46 (277)
T ss_pred HHHHHHHHHHhCcCEEEEEeCCHHHHHHHHh
Confidence 5899999999999999999999887766543
No 331
>PRK11579 putative oxidoreductase; Provisional
Probab=93.57 E-value=1.1 Score=35.51 Aligned_cols=84 Identities=18% Similarity=0.196 Sum_probs=53.8
Q ss_pred CCcEE-EEcCCchhHHHHHHc-CCcccCCHHHHhc--cCCEEEEecCChHHHHHHhcCCccccccCCCCcEEE-ecc-CC
Q psy755 13 GHDVI-VYDKNTDASQTLAKE-GANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVI-DSS-TV 86 (183)
Q Consensus 13 g~~V~-~~~~~~~~~~~~~~~-g~~~~~~~~~~~~--~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iii-d~s-~~ 86 (183)
+.+++ ++|+++++.. .+. +...+++.+++++ +.|+|++++|...+.+.++ ..+..|+.|+ +-- ..
T Consensus 29 ~~~l~av~d~~~~~~~--~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~~-------~al~aGkhVl~EKPla~ 99 (346)
T PRK11579 29 GLELAAVSSSDATKVK--ADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLAK-------AALEAGKHVVVDKPFTV 99 (346)
T ss_pred CCEEEEEECCCHHHHH--hhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHH-------HHHHCCCeEEEeCCCCC
Confidence 56766 5799887643 222 3456778999986 5799999999877655553 4567788766 211 12
Q ss_pred CchhHHHHHHHHHhcCCcE
Q psy755 87 DPQVPQTLSNLAREKQITF 105 (183)
Q Consensus 87 ~~~~~~~~~~~~~~~g~~~ 105 (183)
.......+.+..++.|..+
T Consensus 100 t~~ea~~l~~~a~~~g~~l 118 (346)
T PRK11579 100 TLSQARELDALAKSAGRVL 118 (346)
T ss_pred CHHHHHHHHHHHHHhCCEE
Confidence 3344556666666666553
No 332
>PRK08643 acetoin reductase; Validated
Probab=93.54 E-value=0.32 Score=36.47 Aligned_cols=30 Identities=30% Similarity=0.550 Sum_probs=25.8
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
+|..+++.|++.|++|++.+|++++.+++.
T Consensus 14 iG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 43 (256)
T PRK08643 14 IGFAIAKRLVEDGFKVAIVDYNEETAQAAA 43 (256)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999987765543
No 333
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=93.53 E-value=0.2 Score=39.30 Aligned_cols=68 Identities=21% Similarity=0.259 Sum_probs=42.1
Q ss_pred cHHHHHHHHhCCC-cEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 2 GSHMARNLLKNGH-DVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 2 G~~iA~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
|..+.+.|.++.+ ++.....+..+ . . .+.++..+++|+||+|+|.....+-+ ..+ ...|..|
T Consensus 15 G~eLlrlL~~hp~~~l~~~~s~~~~-------~--~-~~~~~~~~~~DvvFlalp~~~s~~~~----~~~---~~~g~~V 77 (313)
T PRK11863 15 GLQIRERLAGRSDIELLSIPEAKRK-------D--A-AARRELLNAADVAILCLPDDAAREAV----ALI---DNPATRV 77 (313)
T ss_pred HHHHHHHHhcCCCeEEEEEecCCCC-------c--c-cCchhhhcCCCEEEECCCHHHHHHHH----HHH---HhCCCEE
Confidence 6677888887764 44433322221 0 1 23345557899999999986554333 332 3578999
Q ss_pred EeccCC
Q psy755 81 IDSSTV 86 (183)
Q Consensus 81 id~s~~ 86 (183)
||.|+.
T Consensus 78 IDlSad 83 (313)
T PRK11863 78 IDASTA 83 (313)
T ss_pred EECChh
Confidence 999975
No 334
>PLN02780 ketoreductase/ oxidoreductase
Probab=93.50 E-value=0.18 Score=39.59 Aligned_cols=30 Identities=20% Similarity=0.457 Sum_probs=26.7
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
+|.++|+.|++.|++|++.+|++++.+...
T Consensus 65 IG~alA~~La~~G~~Vil~~R~~~~l~~~~ 94 (320)
T PLN02780 65 IGKGFAFQLARKGLNLVLVARNPDKLKDVS 94 (320)
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Confidence 589999999999999999999998877654
No 335
>PRK07825 short chain dehydrogenase; Provisional
Probab=93.48 E-value=0.36 Score=36.61 Aligned_cols=30 Identities=27% Similarity=0.288 Sum_probs=26.0
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 17 iG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 46 (273)
T PRK07825 17 IGLATARALAALGARVAIGDLDEALAKETA 46 (273)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 588999999999999999999998876654
No 336
>PRK07109 short chain dehydrogenase; Provisional
Probab=93.47 E-value=0.29 Score=38.65 Aligned_cols=74 Identities=20% Similarity=0.329 Sum_probs=44.4
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEE--EecCChHHHHHHhcCCccccccCCCCc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFII--SMLPASQDVLDAYDGSDGILKHAKPGV 78 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi--~~vp~~~~~~~v~~~~~~l~~~l~~~~ 78 (183)
+|..+++.|++.|++|++.+|++++.+.+.+. +.+ ..+++.+ .=+.+..+++.++ +.+...+.+=+
T Consensus 20 IG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~-------l~~--~g~~~~~v~~Dv~d~~~v~~~~---~~~~~~~g~iD 87 (334)
T PRK07109 20 VGRATARAFARRGAKVVLLARGEEGLEALAAE-------IRA--AGGEALAVVADVADAEAVQAAA---DRAEEELGPID 87 (334)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHH--cCCcEEEEEecCCCHHHHHHHH---HHHHHHCCCCC
Confidence 58999999999999999999998876654321 111 1123322 2334455555554 44444444445
Q ss_pred EEEeccCC
Q psy755 79 IVIDSSTV 86 (183)
Q Consensus 79 iiid~s~~ 86 (183)
++|++...
T Consensus 88 ~lInnAg~ 95 (334)
T PRK07109 88 TWVNNAMV 95 (334)
T ss_pred EEEECCCc
Confidence 66666543
No 337
>PRK05866 short chain dehydrogenase; Provisional
Probab=93.43 E-value=0.3 Score=37.81 Aligned_cols=30 Identities=20% Similarity=0.402 Sum_probs=26.0
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 52 IG~~la~~La~~G~~Vi~~~R~~~~l~~~~ 81 (293)
T PRK05866 52 IGEAAAEQFARRGATVVAVARREDLLDAVA 81 (293)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 589999999999999999999988766554
No 338
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.38 E-value=1.6 Score=36.36 Aligned_cols=104 Identities=18% Similarity=0.231 Sum_probs=60.4
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchhHHHH-HHcCCcccC--CHHHHhccCCEEEEec--CChHH-HHHHhc-C-----Ccc
Q psy755 2 GSHMARNLLKNGHDVIVYDKNTDASQTL-AKEGANMAL--SLSTLASGAEFIISML--PASQD-VLDAYD-G-----SDG 69 (183)
Q Consensus 2 G~~iA~~l~~~g~~V~~~~~~~~~~~~~-~~~g~~~~~--~~~~~~~~adiVi~~v--p~~~~-~~~v~~-~-----~~~ 69 (183)
|.++|+.|.+.|++|+++|++....... .+.|+.... ...+.+.++|+||.+- |+..+ +...-. + .-+
T Consensus 27 G~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~~~~a~~~gi~v~~~~e 106 (473)
T PRK00141 27 GRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPLLVDAQSQGLEVIGDVE 106 (473)
T ss_pred HHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHHHHHHHHCCCceeeHHH
Confidence 7789999999999999999877654443 334665432 2345567899998773 33322 222110 0 001
Q ss_pred cc------ccCC-CCc-EEEeccCCCchhHHHHHHHHHhcCCcE
Q psy755 70 IL------KHAK-PGV-IVIDSSTVDPQVPQTLSNLAREKQITF 105 (183)
Q Consensus 70 l~------~~l~-~~~-iiid~s~~~~~~~~~~~~~~~~~g~~~ 105 (183)
+. ..+. +.+ +-|-.|+++..+..-+...+...|...
T Consensus 107 l~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~~~ 150 (473)
T PRK00141 107 LAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGFAA 150 (473)
T ss_pred HHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCcE
Confidence 10 0011 223 335566667777777788887766543
No 339
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=93.35 E-value=0.79 Score=37.78 Aligned_cols=102 Identities=14% Similarity=0.219 Sum_probs=59.8
Q ss_pred cHH-HHHHHHhCCCcEEEEcCCch-hHHHHHHcCCcccC-CHHHHhccCCEEEEec--CCh-HHHHHHhc------CCcc
Q psy755 2 GSH-MARNLLKNGHDVIVYDKNTD-ASQTLAKEGANMAL-SLSTLASGAEFIISML--PAS-QDVLDAYD------GSDG 69 (183)
Q Consensus 2 G~~-iA~~l~~~g~~V~~~~~~~~-~~~~~~~~g~~~~~-~~~~~~~~adiVi~~v--p~~-~~~~~v~~------~~~~ 69 (183)
|.+ +|+.|.+.|++|+++|.++. ..+.+.+.|+.... ...+.++++|+||..- |.. ..++.... +.-+
T Consensus 11 Gm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~~~~p~~~~a~~~~i~v~~~~e 90 (448)
T TIGR01082 11 GMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKERGIPVIRRAE 90 (448)
T ss_pred HHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHHcCCceEeHHH
Confidence 565 89999999999999997654 33445555765432 2234466799988764 322 22222210 0011
Q ss_pred cc-ccCCCC-cEEEeccCCCchhHHHHHHHHHhcCC
Q psy755 70 IL-KHAKPG-VIVIDSSTVDPQVPQTLSNLAREKQI 103 (183)
Q Consensus 70 l~-~~l~~~-~iiid~s~~~~~~~~~~~~~~~~~g~ 103 (183)
+. ..+++. .+-|-.|+.+..+..-+...+...|.
T Consensus 91 l~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~ 126 (448)
T TIGR01082 91 MLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAGL 126 (448)
T ss_pred HHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcCC
Confidence 11 222222 34466667778888777888887774
No 340
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=93.34 E-value=0.37 Score=36.14 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=25.5
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 23 IG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 52 (256)
T PRK06124 23 LGFEIARALAGAGAHVLVNGRNAATLEAAV 52 (256)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHH
Confidence 588999999999999999999987665543
No 341
>PRK05693 short chain dehydrogenase; Provisional
Probab=93.34 E-value=0.53 Score=35.75 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=25.8
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 13 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 42 (274)
T PRK05693 13 IGRALADAFKAAGYEVWATARKAEDVEALA 42 (274)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 588999999999999999999987766554
No 342
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=93.32 E-value=0.37 Score=36.29 Aligned_cols=30 Identities=30% Similarity=0.544 Sum_probs=25.9
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
+|.++++.|++.|++|++.+|++++.+...
T Consensus 12 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 41 (259)
T PRK08340 12 IGFNVARELLKKGARVVISSRNEENLEKAL 41 (259)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988766543
No 343
>PRK06349 homoserine dehydrogenase; Provisional
Probab=93.31 E-value=0.27 Score=40.31 Aligned_cols=107 Identities=21% Similarity=0.316 Sum_probs=61.2
Q ss_pred CcHHHHHHHHhC--------C--CcEE-EEcCCchhHHHHHHcCCcccCCHHHHhc--cCCEEEEecCChHHHHHHhcCC
Q psy755 1 MGSHMARNLLKN--------G--HDVI-VYDKNTDASQTLAKEGANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGS 67 (183)
Q Consensus 1 mG~~iA~~l~~~--------g--~~V~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~adiVi~~vp~~~~~~~v~~~~ 67 (183)
||+.+++.|.++ | .+|. ++++++++.+.....+...+++.+++++ +.|+|+.+++........
T Consensus 14 VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~~~~~~~---- 89 (426)
T PRK06349 14 VGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGIEPAREL---- 89 (426)
T ss_pred HHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCchHHHHH----
Confidence 466666666443 3 3444 5688877644322123345678888885 479999998764332232
Q ss_pred ccccccCCCCcEEEeccCC-CchhHHHHHHHHHhcCCcEE-eecccCC
Q psy755 68 DGILKHAKPGVIVIDSSTV-DPQVPQTLSNLAREKQITFL-DAPVSGG 113 (183)
Q Consensus 68 ~~l~~~l~~~~iiid~s~~-~~~~~~~~~~~~~~~g~~~~-~~~~~~~ 113 (183)
....+..|+.|+-.... .......+.+..++.|..+. .+.+.++
T Consensus 90 --~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~fEasV~gg 135 (426)
T PRK06349 90 --ILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLYFEAAVAGG 135 (426)
T ss_pred --HHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEEEEEEeecc
Confidence 34667899988833221 12233555666666777644 3444443
No 344
>PRK07814 short chain dehydrogenase; Provisional
Probab=93.26 E-value=0.35 Score=36.52 Aligned_cols=75 Identities=13% Similarity=0.207 Sum_probs=43.3
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
+|..+++.|++.|++|++.+|++++.+.+.+. +.+.-....++-+-+.+...+..++ +.+...+.+=++|
T Consensus 22 IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~-------l~~~~~~~~~~~~D~~~~~~~~~~~---~~~~~~~~~id~v 91 (263)
T PRK07814 22 LGAAIALAFAEAGADVLIAARTESQLDEVAEQ-------IRAAGRRAHVVAADLAHPEATAGLA---GQAVEAFGRLDIV 91 (263)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhcCCcEEEEEccCCCHHHHHHHH---HHHHHHcCCCCEE
Confidence 58899999999999999999998776554332 0000001122223344555555554 4443434344566
Q ss_pred EeccC
Q psy755 81 IDSST 85 (183)
Q Consensus 81 id~s~ 85 (183)
+++..
T Consensus 92 i~~Ag 96 (263)
T PRK07814 92 VNNVG 96 (263)
T ss_pred EECCC
Confidence 66654
No 345
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=93.20 E-value=0.4 Score=36.01 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=26.6
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAK 31 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~ 31 (183)
+|..+++.|++.|++|++.+|+++..+...+
T Consensus 18 iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~ 48 (257)
T PRK07067 18 IGEAVAERYLAEGARVVIADIKPARARLAAL 48 (257)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 5899999999999999999999987766543
No 346
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=93.19 E-value=0.094 Score=41.66 Aligned_cols=78 Identities=21% Similarity=0.238 Sum_probs=45.4
Q ss_pred cHHHHHHHHhCCCc---EEEEcCCchhHHHHHHcCC--cccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCC
Q psy755 2 GSHMARNLLKNGHD---VIVYDKNTDASQTLAKEGA--NMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 76 (183)
Q Consensus 2 G~~iA~~l~~~g~~---V~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~ 76 (183)
|..+.+.|.+++|+ +..+.+.+..-+.+...+. ...+...+.++++|+||+|+|.....+.. + .++..
T Consensus 12 G~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~~s~~~a----~---~~~~~ 84 (339)
T TIGR01296 12 GQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGSVSKEFA----P---KAAKC 84 (339)
T ss_pred HHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHHHHHHHH----H---HHHHC
Confidence 77899999998885 3344343332222222221 12111123457899999999886543322 2 23457
Q ss_pred CcEEEeccCC
Q psy755 77 GVIVIDSSTV 86 (183)
Q Consensus 77 ~~iiid~s~~ 86 (183)
|..|||.|+.
T Consensus 85 G~~VID~ss~ 94 (339)
T TIGR01296 85 GAIVIDNTSA 94 (339)
T ss_pred CCEEEECCHH
Confidence 8889999963
No 347
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=93.17 E-value=0.16 Score=43.09 Aligned_cols=55 Identities=22% Similarity=0.290 Sum_probs=38.9
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHc---------C------C--c--ccC---CHHHHhccCCEEEEecC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKE---------G------A--N--MAL---SLSTLASGAEFIISMLP 55 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~---------g------~--~--~~~---~~~~~~~~adiVi~~vp 55 (183)
+|+.+++.|++.|++|++++|+.++.+.+.+. | + . ... ++.+.+.++|+||.+..
T Consensus 92 IG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aLggiDiVVn~AG 168 (576)
T PLN03209 92 VGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPALGNASVVICCIG 168 (576)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHhcCCCEEEEccc
Confidence 58899999999999999999999887654321 1 1 0 111 23345678999998874
No 348
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=93.12 E-value=0.39 Score=35.85 Aligned_cols=76 Identities=22% Similarity=0.266 Sum_probs=43.2
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
+|..+++.|++.|++|++.+|+++..+.+.+. +.+.-.+...+..=+.++..++.++ .++.+.+.+-.++
T Consensus 12 iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~-------l~~~~~~~~~~~~Dl~~~~~i~~~~---~~~~~~~~~id~v 81 (254)
T TIGR02415 12 IGKGIAERLAKDGFAVAVADLNEETAKETAKE-------INQAGGKAVAYKLDVSDKDQVFSAI---DQAAEKFGGFDVM 81 (254)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhcCCeEEEEEcCCCCHHHHHHHH---HHHHHHcCCCCEE
Confidence 58899999999999999999987665544321 0000011222233334555555554 4444444444566
Q ss_pred EeccCC
Q psy755 81 IDSSTV 86 (183)
Q Consensus 81 id~s~~ 86 (183)
+++...
T Consensus 82 i~~ag~ 87 (254)
T TIGR02415 82 VNNAGV 87 (254)
T ss_pred EECCCc
Confidence 666544
No 349
>PRK07454 short chain dehydrogenase; Provisional
Probab=93.05 E-value=0.41 Score=35.53 Aligned_cols=30 Identities=30% Similarity=0.452 Sum_probs=25.4
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 18 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 47 (241)
T PRK07454 18 IGKATALAFAKAGWDLALVARSQDALEALA 47 (241)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 588999999999999999999987665543
No 350
>PRK05876 short chain dehydrogenase; Provisional
Probab=92.98 E-value=0.38 Score=36.79 Aligned_cols=29 Identities=14% Similarity=0.274 Sum_probs=25.4
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTL 29 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~ 29 (183)
+|.++|+.|++.|++|++.+|+++..+.+
T Consensus 18 IG~ala~~La~~G~~Vv~~~r~~~~l~~~ 46 (275)
T PRK05876 18 IGLATGTEFARRGARVVLGDVDKPGLRQA 46 (275)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 58999999999999999999998776554
No 351
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=92.96 E-value=0.46 Score=35.86 Aligned_cols=31 Identities=26% Similarity=0.437 Sum_probs=26.8
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAK 31 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~ 31 (183)
+|.++++.|++.|++|++.+|+.++.+.+.+
T Consensus 17 IG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~ 47 (262)
T TIGR03325 17 LGRAIVDRFVAEGARVAVLDKSAAGLQELEA 47 (262)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence 6899999999999999999999887766543
No 352
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=92.96 E-value=0.36 Score=36.28 Aligned_cols=75 Identities=17% Similarity=0.254 Sum_probs=43.4
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
+|..+++.|++.|++|++.+|++++.+...+. ....-.....+-.-+.++..++..+ .++.+.+.+=+.+
T Consensus 24 IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~-------i~~~~~~~~~~~~Dl~d~~~i~~~~---~~~~~~~~~id~v 93 (259)
T PRK08213 24 LGLQIAEALGEAGARVVLSARKAEELEEAAAH-------LEALGIDALWIAADVADEADIERLA---EETLERFGHVDIL 93 (259)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-------HHhcCCeEEEEEccCCCHHHHHHHH---HHHHHHhCCCCEE
Confidence 58899999999999999999998776554321 0000011223333344445555544 4444433344566
Q ss_pred EeccC
Q psy755 81 IDSST 85 (183)
Q Consensus 81 id~s~ 85 (183)
+++..
T Consensus 94 i~~ag 98 (259)
T PRK08213 94 VNNAG 98 (259)
T ss_pred EECCC
Confidence 76654
No 353
>PRK07063 short chain dehydrogenase; Provisional
Probab=92.90 E-value=0.39 Score=36.12 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=26.1
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
+|.++++.|++.|++|++.+|++++.+...
T Consensus 19 IG~~~a~~l~~~G~~vv~~~r~~~~~~~~~ 48 (260)
T PRK07063 19 IGAAIARAFAREGAAVALADLDAALAERAA 48 (260)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988766554
No 354
>PRK06756 flavodoxin; Provisional
Probab=92.87 E-value=2.2 Score=29.38 Aligned_cols=113 Identities=15% Similarity=0.082 Sum_probs=60.2
Q ss_pred HHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChH------HHHHHhcCCccccccCCC
Q psy755 3 SHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQ------DVLDAYDGSDGILKHAKP 76 (183)
Q Consensus 3 ~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~------~~~~v~~~~~~l~~~l~~ 76 (183)
..|+..|.+.|++|.+++.... ... +.+.++|.|++.+|.-. .+...+ +.+...-.+
T Consensus 20 ~~ia~~l~~~g~~v~~~~~~~~-------------~~~-~~~~~~d~vi~gspt~~~g~~p~~~~~fl---~~l~~~~l~ 82 (148)
T PRK06756 20 DHIAGVIRETENEIEVIDIMDS-------------PEA-SILEQYDGIILGAYTWGDGDLPDDFLDFY---DAMDSIDLT 82 (148)
T ss_pred HHHHHHHhhcCCeEEEeehhcc-------------CCH-HHHhcCCeEEEEeCCCCCCCCcHHHHHHH---HHHhcCCCC
Confidence 4455555555666655543221 012 33568999999987631 234443 333322225
Q ss_pred CcEEEeccCCC------chhHHHHHHHHHhcCCcEEeecccCCHHHHhcCceEEEecCCHHHHHHHHHHHHHhc
Q psy755 77 GVIVIDSSTVD------PQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMG 144 (183)
Q Consensus 77 ~~iiid~s~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g 144 (183)
++.+.-.++.. ......+.+.+.+.|...+..|+. +-...+++..+.++++.+.+.
T Consensus 83 ~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~~~~------------~~~~p~~~d~~~~~~~~~~~~ 144 (148)
T PRK06756 83 GKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLEGLK------------VELTPEDEDVEKCLQFGAEFV 144 (148)
T ss_pred CCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCCCeE------------EecCCCHHHHHHHHHHHHHHH
Confidence 55544333321 244566777777788887764322 111235566677777766653
No 355
>PRK07024 short chain dehydrogenase; Provisional
Probab=92.81 E-value=0.52 Score=35.45 Aligned_cols=31 Identities=29% Similarity=0.461 Sum_probs=26.4
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAK 31 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~ 31 (183)
+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 14 IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 44 (257)
T PRK07024 14 IGQALAREYARQGATLGLVARRTDALQAFAA 44 (257)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999887665543
No 356
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=92.80 E-value=0.39 Score=36.01 Aligned_cols=30 Identities=30% Similarity=0.508 Sum_probs=25.8
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
+|..+++.|+++|++|++.+|++++.+.+.
T Consensus 19 iG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 48 (262)
T PRK13394 19 IGKEIALELARAGAAVAIADLNQDGANAVA 48 (262)
T ss_pred HHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Confidence 588999999999999999999997765554
No 357
>PRK12939 short chain dehydrogenase; Provisional
Probab=92.79 E-value=0.44 Score=35.40 Aligned_cols=30 Identities=27% Similarity=0.384 Sum_probs=25.4
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
+|..+++.|.+.|++|++.+|++++.+...
T Consensus 19 iG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 48 (250)
T PRK12939 19 LGAAFAEALAEAGATVAFNDGLAAEARELA 48 (250)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 588999999999999999999988766543
No 358
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=92.72 E-value=0.34 Score=37.94 Aligned_cols=53 Identities=17% Similarity=0.243 Sum_probs=35.3
Q ss_pred cHHHHHHHHhCCC--cEEEEcCCc--hhHHHHH--------HcCC--c--ccCCHHHHhccCCEEEEecC
Q psy755 2 GSHMARNLLKNGH--DVIVYDKNT--DASQTLA--------KEGA--N--MALSLSTLASGAEFIISMLP 55 (183)
Q Consensus 2 G~~iA~~l~~~g~--~V~~~~~~~--~~~~~~~--------~~g~--~--~~~~~~~~~~~adiVi~~vp 55 (183)
|..++..|+..|+ +|+++|+++ ++++... ..+. . ...+ .+.+++||+||++..
T Consensus 13 G~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aDiViitag 81 (309)
T cd05294 13 GSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSDIVIITAG 81 (309)
T ss_pred HHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCCEEEEecC
Confidence 7788999999887 599999955 4332111 1121 1 2234 455899999999996
No 359
>PRK12828 short chain dehydrogenase; Provisional
Probab=92.72 E-value=0.73 Score=33.88 Aligned_cols=73 Identities=14% Similarity=0.059 Sum_probs=42.6
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
+|..+++.|++.|++|++.+|++++.....+. +. ....+++..-+.+...++.++ +++.....+-..|
T Consensus 19 iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~-------~~--~~~~~~~~~D~~~~~~~~~~~---~~~~~~~~~~d~v 86 (239)
T PRK12828 19 LGRATAAWLAARGARVALIGRGAAPLSQTLPG-------VP--ADALRIGGIDLVDPQAARRAV---DEVNRQFGRLDAL 86 (239)
T ss_pred HhHHHHHHHHHCCCeEEEEeCChHhHHHHHHH-------Hh--hcCceEEEeecCCHHHHHHHH---HHHHHHhCCcCEE
Confidence 58899999999999999999988765443221 00 012344444445555555554 4443333333455
Q ss_pred EeccC
Q psy755 81 IDSST 85 (183)
Q Consensus 81 id~s~ 85 (183)
++...
T Consensus 87 i~~ag 91 (239)
T PRK12828 87 VNIAG 91 (239)
T ss_pred EECCc
Confidence 55543
No 360
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.69 E-value=2.2 Score=35.08 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=20.5
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCch
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTD 24 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~ 24 (183)
+|.++|+.|++.|++|+++|.++.
T Consensus 16 ~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 16 TGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCC
Confidence 378889999999999999987654
No 361
>PRK06720 hypothetical protein; Provisional
Probab=92.65 E-value=0.62 Score=33.10 Aligned_cols=29 Identities=34% Similarity=0.456 Sum_probs=24.4
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTL 29 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~ 29 (183)
+|.+++..|.+.|++|++++|+.+..+..
T Consensus 28 IG~aia~~l~~~G~~V~l~~r~~~~~~~~ 56 (169)
T PRK06720 28 IGRNTALLLAKQGAKVIVTDIDQESGQAT 56 (169)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 58899999999999999999987765443
No 362
>PRK08589 short chain dehydrogenase; Validated
Probab=92.63 E-value=0.6 Score=35.53 Aligned_cols=75 Identities=17% Similarity=0.166 Sum_probs=42.0
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
+|.++++.|++.|++|++.+|+ +..+...+. +.+.-.+...+.+=+.+...+..++ +.+...+.+=.++
T Consensus 18 IG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~-------~~~~~~~~~~~~~Dl~~~~~~~~~~---~~~~~~~g~id~l 86 (272)
T PRK08589 18 IGQASAIALAQEGAYVLAVDIA-EAVSETVDK-------IKSNGGKAKAYHVDISDEQQVKDFA---SEIKEQFGRVDVL 86 (272)
T ss_pred HHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHH-------HHhcCCeEEEEEeecCCHHHHHHHH---HHHHHHcCCcCEE
Confidence 5899999999999999999998 554443221 0000011223333344555555554 4444433333456
Q ss_pred EeccCC
Q psy755 81 IDSSTV 86 (183)
Q Consensus 81 id~s~~ 86 (183)
|++...
T Consensus 87 i~~Ag~ 92 (272)
T PRK08589 87 FNNAGV 92 (272)
T ss_pred EECCCC
Confidence 665543
No 363
>PRK07774 short chain dehydrogenase; Provisional
Probab=92.60 E-value=0.44 Score=35.52 Aligned_cols=29 Identities=28% Similarity=0.527 Sum_probs=24.9
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTL 29 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~ 29 (183)
+|..+++.|++.|++|++.+|+++..+.+
T Consensus 18 iG~~la~~l~~~g~~vi~~~r~~~~~~~~ 46 (250)
T PRK07774 18 IGQAYAEALAREGASVVVADINAEGAERV 46 (250)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 58999999999999999999998765544
No 364
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=92.56 E-value=0.53 Score=35.28 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=25.0
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTL 29 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~ 29 (183)
+|..+++.|++.|++|++.+|++++.+.+
T Consensus 22 iG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 50 (255)
T PRK07523 22 IGYALAEGLAQAGAEVILNGRDPAKLAAA 50 (255)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 58899999999999999999998766544
No 365
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.55 E-value=1.1 Score=36.82 Aligned_cols=111 Identities=20% Similarity=0.172 Sum_probs=63.0
Q ss_pred cHHHHHHHHhCCCcEEEEcCCch--hHHHHHHc--CCcccC--CHHHHhccCCEEEEec--CChHH-HHHHhc-C-----
Q psy755 2 GSHMARNLLKNGHDVIVYDKNTD--ASQTLAKE--GANMAL--SLSTLASGAEFIISML--PASQD-VLDAYD-G----- 66 (183)
Q Consensus 2 G~~iA~~l~~~g~~V~~~~~~~~--~~~~~~~~--g~~~~~--~~~~~~~~adiVi~~v--p~~~~-~~~v~~-~----- 66 (183)
|.++|+.|.+.|++|+++|..+. ..+.+.+. |+.... ...+.+.++|+||..- |+..+ +..... +
T Consensus 18 G~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~~~~a~~~~i~i~~ 97 (448)
T PRK03803 18 GLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPALRAAAAMGIEVIG 97 (448)
T ss_pred HHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHHHHHHHHCCCcEEE
Confidence 77899999999999999997643 22345442 654421 2344567899887764 22222 222110 0
Q ss_pred CccccccCCCCc-EEEeccCCCchhHHHHHHHHHhcCCcEEeecccC
Q psy755 67 SDGILKHAKPGV-IVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSG 112 (183)
Q Consensus 67 ~~~l~~~l~~~~-iiid~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 112 (183)
.-++...+.+.. +-|-.|+.+..+..-+...+...|..+..+...+
T Consensus 98 ~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig 144 (448)
T PRK03803 98 DIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIG 144 (448)
T ss_pred HHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcC
Confidence 001222222333 3456667777788888888887776554443333
No 366
>PRK05854 short chain dehydrogenase; Provisional
Probab=92.46 E-value=0.73 Score=35.98 Aligned_cols=30 Identities=27% Similarity=0.413 Sum_probs=26.2
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
||..+|+.|++.|++|++.+|+.++.+.+.
T Consensus 26 IG~~~a~~La~~G~~Vil~~R~~~~~~~~~ 55 (313)
T PRK05854 26 LGLGLARRLAAAGAEVILPVRNRAKGEAAV 55 (313)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988766554
No 367
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=92.46 E-value=0.54 Score=35.22 Aligned_cols=29 Identities=21% Similarity=0.413 Sum_probs=25.4
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTL 29 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~ 29 (183)
+|.++++.|++.|++|++.+|++++.+.+
T Consensus 21 iG~~ia~~L~~~G~~vvl~~r~~~~~~~~ 49 (254)
T PRK08085 21 IGFLLATGLAEYGAEIIINDITAERAELA 49 (254)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence 58999999999999999999998776554
No 368
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=92.45 E-value=2.4 Score=30.76 Aligned_cols=134 Identities=10% Similarity=-0.030 Sum_probs=63.8
Q ss_pred HHHHHHHhCCCcEEEEcCCchhHHHHHHcC--CcccCCHHHHhccCCEEEEecCCh-----HHHHHHhcCCccccccCCC
Q psy755 4 HMARNLLKNGHDVIVYDKNTDASQTLAKEG--ANMALSLSTLASGAEFIISMLPAS-----QDVLDAYDGSDGILKHAKP 76 (183)
Q Consensus 4 ~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~adiVi~~vp~~-----~~~~~v~~~~~~l~~~l~~ 76 (183)
.++..+.+.|++|..+|...-..+.+.... ........+.+.+||.||+++|.- ..+|..+ +.+....-.
T Consensus 22 ~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y~~s~pg~LKn~i---D~l~~~~l~ 98 (191)
T PRK10569 22 YAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVYKASFSGALKTLL---DLLPERALE 98 (191)
T ss_pred HHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCccCCCCCHHHHHHH---HhCChhhhC
Confidence 345556678999887765433333332211 112223445678999999999843 3355554 333222224
Q ss_pred CcEEE-eccCCCchhHHHHH----HHHHhcCCcEEeecccCCHHHHh-cCceEEEecCCHHHHHHHHHHHHHh
Q psy755 77 GVIVI-DSSTVDPQVPQTLS----NLAREKQITFLDAPVSGGTKAAQ-EATLTFMVGGDKSSLEKAKPILKCM 143 (183)
Q Consensus 77 ~~iii-d~s~~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~l~~~~ 143 (183)
++.+. -.+++.+.....+. ..+...+...+..+++....... ....-. -+++..++++.+++.+
T Consensus 99 ~K~v~iiat~G~~~~~~~~~~~lr~~l~~l~a~~~~~~~~~~~~~~~~~d~~~~---~d~~~~~rl~~~~~~~ 168 (191)
T PRK10569 99 HKVVLPLATGGSVAHMLAVDYALKPVLSALKAQEILHGVFADDSQVIDYHHQPQ---FTPNLQTRLDEALETF 168 (191)
T ss_pred CCEEEEEEecCCchhHHHHHHHHHHHHHHcCCeecCceEEEechhhhccccccc---cCHHHHHHHHHHHHHH
Confidence 55433 33334555444443 34444455544433333222111 010001 1556666666655555
No 369
>KOG4230|consensus
Probab=92.43 E-value=0.32 Score=41.10 Aligned_cols=42 Identities=26% Similarity=0.322 Sum_probs=33.0
Q ss_pred cCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEeccCCC
Q psy755 37 ALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVD 87 (183)
Q Consensus 37 ~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~s~~~ 87 (183)
+.++.+.+.++|+||.++--++.++. +++++|.++||++..+
T Consensus 196 T~~lae~v~~ADIvIvAiG~PefVKg---------dWiKpGavVIDvGINy 237 (935)
T KOG4230|consen 196 TRNLAEKVSRADIVIVAIGQPEFVKG---------DWIKPGAVVIDVGINY 237 (935)
T ss_pred CccHHHHhccCCEEEEEcCCcceeec---------ccccCCcEEEEccccc
Confidence 34678889999999999977665443 4688999999998643
No 370
>PRK06196 oxidoreductase; Provisional
Probab=92.39 E-value=0.56 Score=36.57 Aligned_cols=30 Identities=27% Similarity=0.420 Sum_probs=25.9
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
+|..+++.|++.|++|++.+|++++.+...
T Consensus 38 IG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~ 67 (315)
T PRK06196 38 LGLETTRALAQAGAHVIVPARRPDVAREAL 67 (315)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988766543
No 371
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=92.33 E-value=0.81 Score=37.85 Aligned_cols=102 Identities=18% Similarity=0.178 Sum_probs=60.6
Q ss_pred cHH-HHHHHHhCCCcEEEEcCCch-hHHHHHHcCCccc-CCHHHHhccCCEEEEec--CChH-HHHHHh------cCCcc
Q psy755 2 GSH-MARNLLKNGHDVIVYDKNTD-ASQTLAKEGANMA-LSLSTLASGAEFIISML--PASQ-DVLDAY------DGSDG 69 (183)
Q Consensus 2 G~~-iA~~l~~~g~~V~~~~~~~~-~~~~~~~~g~~~~-~~~~~~~~~adiVi~~v--p~~~-~~~~v~------~~~~~ 69 (183)
|.+ +|+.|.+.|++|+++|.++. ..+.+.+.|+... ....+.++++|+||.+- |... .++... .+..+
T Consensus 19 G~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~~a~~~~i~i~~~~e 98 (461)
T PRK00421 19 GMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELVAARELGIPVVRRAE 98 (461)
T ss_pred hHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHHCCCcEEeHHH
Confidence 677 79999999999999997654 3344555566542 22344567899988765 2221 222211 00111
Q ss_pred ccccC-CC-CcEEEeccCCCchhHHHHHHHHHhcCC
Q psy755 70 ILKHA-KP-GVIVIDSSTVDPQVPQTLSNLAREKQI 103 (183)
Q Consensus 70 l~~~l-~~-~~iiid~s~~~~~~~~~~~~~~~~~g~ 103 (183)
+...+ .+ ..+-|-.|+++..+..-+...++..|.
T Consensus 99 ~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~ 134 (461)
T PRK00421 99 MLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAGL 134 (461)
T ss_pred HHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence 22222 22 234466667788888888888877764
No 372
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=92.30 E-value=0.62 Score=34.73 Aligned_cols=31 Identities=29% Similarity=0.411 Sum_probs=26.0
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAK 31 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~ 31 (183)
+|..+++.|++.|++|++.+|+++..+.+.+
T Consensus 13 lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~ 43 (255)
T TIGR01963 13 IGLAIALALAAAGANVVVNDLGEAGAEAAAK 43 (255)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4889999999999999999999877665543
No 373
>PRK06179 short chain dehydrogenase; Provisional
Probab=92.29 E-value=0.46 Score=35.94 Aligned_cols=68 Identities=19% Similarity=0.296 Sum_probs=42.3
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
+|..+++.|++.|++|++.+|++++.+.. .+..++-.=+.++..++.++ +.+.....+-+++
T Consensus 16 iG~~~a~~l~~~g~~V~~~~r~~~~~~~~---------------~~~~~~~~D~~d~~~~~~~~---~~~~~~~g~~d~l 77 (270)
T PRK06179 16 IGRATAEKLARAGYRVFGTSRNPARAAPI---------------PGVELLELDVTDDASVQAAV---DEVIARAGRIDVL 77 (270)
T ss_pred HHHHHHHHHHHCCCEEEEEeCChhhcccc---------------CCCeeEEeecCCHHHHHHHH---HHHHHhCCCCCEE
Confidence 58999999999999999999987654321 12233333444555555555 4444444444566
Q ss_pred EeccCC
Q psy755 81 IDSSTV 86 (183)
Q Consensus 81 id~s~~ 86 (183)
+++.+.
T Consensus 78 i~~ag~ 83 (270)
T PRK06179 78 VNNAGV 83 (270)
T ss_pred EECCCC
Confidence 666554
No 374
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=92.26 E-value=0.49 Score=38.34 Aligned_cols=56 Identities=21% Similarity=0.327 Sum_probs=44.2
Q ss_pred HHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHH
Q psy755 3 SHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLD 62 (183)
Q Consensus 3 ~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~ 62 (183)
..|+..|.+.|.+|.+||.--.... ..++...+++.+++++||+|++.+-+ +..+.
T Consensus 319 ~~i~~~L~~~G~~v~~~DP~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 374 (388)
T PRK15057 319 QGIMKRIKAKGVEVIIYEPVMKEDS---FFNSRLERDLATFKQQADVIISNRMA-EELKD 374 (388)
T ss_pred HHHHHHHHhCCCEEEEECCCCCchh---hcCCeeeCCHHHHHHhCCEEEEcCCc-HHHHh
Confidence 4678899999999999997643322 33778889999999999999999977 44444
No 375
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=92.24 E-value=0.63 Score=34.33 Aligned_cols=29 Identities=34% Similarity=0.694 Sum_probs=24.8
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTL 29 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~ 29 (183)
+|..+++.|++.|++|.+.+|++++.+..
T Consensus 17 iG~~l~~~l~~~g~~v~~~~r~~~~~~~~ 45 (246)
T PRK05653 17 IGRAIALRLAADGAKVVIYDSNEEAAEAL 45 (246)
T ss_pred HHHHHHHHHHHCCCEEEEEeCChhHHHHH
Confidence 48899999999999999999998776543
No 376
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=92.23 E-value=0.65 Score=38.13 Aligned_cols=81 Identities=20% Similarity=0.139 Sum_probs=48.1
Q ss_pred HHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEe
Q psy755 3 SHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVID 82 (183)
Q Consensus 3 ~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid 82 (183)
..|+..|.+.|.+|.+||..-...+.....+....+ ....+++|.|++.+..++ .+..=+ +.+...++...+|+|
T Consensus 337 ~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~--~~~~~~ad~vvi~t~h~~-f~~~~~--~~~~~~~~~~~~iiD 411 (425)
T PRK15182 337 IDVVKELGKYSCKVDIFDPWVDAEEVRREYGIIPVS--EVKSSHYDAIIVAVGHQQ-FKQMGS--EDIRGFGKDKHVLYD 411 (425)
T ss_pred HHHHHHHHhCCCEEEEECCCCChhHHHHhcCcccch--hhhhcCCCEEEEccCCHH-hhcCCH--HHHHHhcCCCCEEEE
Confidence 468889999999999999752211111112321111 224678999999998754 333200 234443433458899
Q ss_pred ccCCCc
Q psy755 83 SSTVDP 88 (183)
Q Consensus 83 ~s~~~~ 88 (183)
+-+...
T Consensus 412 ~r~~~~ 417 (425)
T PRK15182 412 LKYVLP 417 (425)
T ss_pred CCCCCC
Confidence 887765
No 377
>PRK07062 short chain dehydrogenase; Provisional
Probab=92.23 E-value=0.51 Score=35.59 Aligned_cols=30 Identities=17% Similarity=0.318 Sum_probs=26.0
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
+|.++++.|++.|++|++.+|++++.+...
T Consensus 20 iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 49 (265)
T PRK07062 20 IGLATVELLLEAGASVAICGRDEERLASAE 49 (265)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 589999999999999999999988766543
No 378
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.21 E-value=0.69 Score=35.31 Aligned_cols=25 Identities=12% Similarity=0.200 Sum_probs=22.0
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchh
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDA 25 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~ 25 (183)
||.++|+.|++.|++|++.+|+...
T Consensus 21 IG~aiA~~la~~Ga~V~~~~r~~~~ 45 (271)
T PRK06505 21 IAWGIAKQLAAQGAELAFTYQGEAL 45 (271)
T ss_pred HHHHHHHHHHhCCCEEEEecCchHH
Confidence 6899999999999999999887643
No 379
>PRK06057 short chain dehydrogenase; Provisional
Probab=92.20 E-value=0.89 Score=34.10 Aligned_cols=30 Identities=33% Similarity=0.464 Sum_probs=25.6
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
+|..+++.|++.|++|++.+|++.+.+...
T Consensus 19 IG~~~a~~l~~~G~~v~~~~r~~~~~~~~~ 48 (255)
T PRK06057 19 IGLATARRLAAEGATVVVGDIDPEAGKAAA 48 (255)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999987765543
No 380
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=92.10 E-value=0.14 Score=35.55 Aligned_cols=76 Identities=22% Similarity=0.182 Sum_probs=45.0
Q ss_pred HHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEec
Q psy755 4 HMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDS 83 (183)
Q Consensus 4 ~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid~ 83 (183)
++...|.+.+++++++|++++..... .+.......++++.+||+|+++-.. -+...+ +.+.+..+++..++-.
T Consensus 22 P~~~~l~~~~~~v~v~d~~~~~~~~~--~~~~~~~~~~~~l~~aD~viiTGsT--lvN~Ti---~~iL~~~~~~~~vil~ 94 (147)
T PF04016_consen 22 PLVEKLKERGAEVRVFDLNPDNIGEE--PGDVPDEDAEEILPWADVVIITGST--LVNGTI---DDILELARNAREVILY 94 (147)
T ss_dssp CCHHHHCCCCSEEEEEESSGGG--SS--CT-EEGGGHHHHGGG-SEEEEECHH--CCTTTH---HHHHHHTTTSSEEEEE
T ss_pred HHHHHHhcCCCCEEEEECCCCCCCCC--CCcCCHHHHHHHHccCCEEEEEeee--eecCCH---HHHHHhCccCCeEEEE
Confidence 45677887889999999999764321 1222444677889999999998521 112222 4444555555555544
Q ss_pred cCC
Q psy755 84 STV 86 (183)
Q Consensus 84 s~~ 86 (183)
+.+
T Consensus 95 GpS 97 (147)
T PF04016_consen 95 GPS 97 (147)
T ss_dssp SCC
T ss_pred ecC
Confidence 443
No 381
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.10 E-value=0.83 Score=34.48 Aligned_cols=25 Identities=24% Similarity=0.180 Sum_probs=22.0
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchh
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDA 25 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~ 25 (183)
||.++|+.|++.|++|++.+|+++.
T Consensus 24 IG~a~a~~la~~G~~v~l~~r~~~~ 48 (258)
T PRK07533 24 IAWGCARAFRALGAELAVTYLNDKA 48 (258)
T ss_pred HHHHHHHHHHHcCCEEEEEeCChhh
Confidence 6899999999999999999888653
No 382
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=92.10 E-value=0.58 Score=37.80 Aligned_cols=79 Identities=16% Similarity=0.196 Sum_probs=52.1
Q ss_pred HHHHHHHhCCCcEEEEcCCchhHH-HHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEEe
Q psy755 4 HMARNLLKNGHDVIVYDKNTDASQ-TLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVID 82 (183)
Q Consensus 4 ~iA~~l~~~g~~V~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iiid 82 (183)
-+...|.+.|-+|.+||..-...+ +....+.. ....++.++++|+|++++-. .+.+.+ .....-+..++|+|
T Consensus 346 ~ii~~l~~~g~~v~~~DP~v~~~~~~~~~~~~~-~~~~e~al~~~D~vVi~tDH-~~fk~i-----d~~~i~~~~~vivD 418 (436)
T COG0677 346 DIIELLEEWGGEVLVYDPYVKELPTREDGEGVT-LAILEEALKDADAVVIATDH-SEFKEI-----DYEAIGKEAKVIVD 418 (436)
T ss_pred HHHHHHHHhCCeEEEECCCCCcchhhhhccccc-hhhHHHHhccCCEEEEEecc-HHhhcC-----CHHHhccCCcEEEE
Confidence 366778888999999998877655 22222222 36788999999999999944 444332 11122233788999
Q ss_pred ccCCCch
Q psy755 83 SSTVDPQ 89 (183)
Q Consensus 83 ~s~~~~~ 89 (183)
+-+....
T Consensus 419 trnV~~~ 425 (436)
T COG0677 419 TRNVWKR 425 (436)
T ss_pred Cccccch
Confidence 8876543
No 383
>PRK07326 short chain dehydrogenase; Provisional
Probab=92.02 E-value=0.67 Score=34.18 Aligned_cols=30 Identities=23% Similarity=0.374 Sum_probs=25.5
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 18 iG~~la~~l~~~g~~V~~~~r~~~~~~~~~ 47 (237)
T PRK07326 18 IGFAIAEALLAEGYKVAITARDQKELEEAA 47 (237)
T ss_pred HHHHHHHHHHHCCCEEEEeeCCHHHHHHHH
Confidence 488999999999999999999987765543
No 384
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=92.01 E-value=0.49 Score=36.00 Aligned_cols=30 Identities=27% Similarity=0.615 Sum_probs=25.4
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
+|.++++.|++.|++|++.+|+++..+.+.
T Consensus 22 iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 51 (278)
T PRK08277 22 LGGAMAKELARAGAKVAILDRNQEKAEAVV 51 (278)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999987665543
No 385
>PRK06703 flavodoxin; Provisional
Probab=91.87 E-value=3 Score=28.75 Aligned_cols=88 Identities=13% Similarity=0.037 Sum_probs=46.0
Q ss_pred HHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCCh------HHHHHHhcCCccccccCCC
Q psy755 3 SHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPAS------QDVLDAYDGSDGILKHAKP 76 (183)
Q Consensus 3 ~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~------~~~~~v~~~~~~l~~~l~~ 76 (183)
..|+..|...|++|.+.+.+.. +. +.+.++|.|++++|.- ..+...+ +.+.+.-.+
T Consensus 20 ~~ia~~l~~~g~~v~~~~~~~~--------------~~-~~l~~~d~viigspt~~~g~~p~~~~~f~---~~l~~~~l~ 81 (151)
T PRK06703 20 DLIKVSLDAFDHEVVLQEMDGM--------------DA-EELLAYDGIILGSYTWGDGDLPYEAEDFH---EDLENIDLS 81 (151)
T ss_pred HHHHHHHHhcCCceEEEehhhC--------------CH-HHHhcCCcEEEEECCCCCCcCcHHHHHHH---HHHhcCCCC
Confidence 4455555555666665543321 11 2356789999988742 2344443 334332224
Q ss_pred CcEEEeccCCC---c---hhHHHHHHHHHhcCCcEEee
Q psy755 77 GVIVIDSSTVD---P---QVPQTLSNLAREKQITFLDA 108 (183)
Q Consensus 77 ~~iiid~s~~~---~---~~~~~~~~~~~~~g~~~~~~ 108 (183)
++.+.-.++.. + .....+.+.+.+.|..++..
T Consensus 82 ~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~~~~~~ 119 (151)
T PRK06703 82 GKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAELVQE 119 (151)
T ss_pred CCEEEEEccCCCChHHHHHHHHHHHHHHHHCCCEEccc
Confidence 54443333321 1 23344777788888877664
No 386
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=91.86 E-value=0.76 Score=34.32 Aligned_cols=30 Identities=27% Similarity=0.558 Sum_probs=25.6
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
+|..+++.|.+.|++|++.+|++++.+.+.
T Consensus 12 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 41 (248)
T PRK10538 12 FGECITRRFIQQGHKVIATGRRQERLQELK 41 (248)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 478999999999999999999988766543
No 387
>PRK07074 short chain dehydrogenase; Provisional
Probab=91.85 E-value=0.96 Score=33.88 Aligned_cols=31 Identities=29% Similarity=0.514 Sum_probs=26.3
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAK 31 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~ 31 (183)
+|..++..|++.|++|++.+|++++.+.+.+
T Consensus 14 iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~ 44 (257)
T PRK07074 14 IGQALARRFLAAGDRVLALDIDAAALAAFAD 44 (257)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5889999999999999999999887665543
No 388
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=91.84 E-value=2.2 Score=34.88 Aligned_cols=112 Identities=21% Similarity=0.231 Sum_probs=62.9
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchh-HH---H-HH-HcCCcccC-CHHHHhccCCEEEEec--CChHH-HHHHh------c
Q psy755 2 GSHMARNLLKNGHDVIVYDKNTDA-SQ---T-LA-KEGANMAL-SLSTLASGAEFIISML--PASQD-VLDAY------D 65 (183)
Q Consensus 2 G~~iA~~l~~~g~~V~~~~~~~~~-~~---~-~~-~~g~~~~~-~~~~~~~~adiVi~~v--p~~~~-~~~v~------~ 65 (183)
|.++|+.|.+.|++|+++|..+.. .+ . +. ..|+.... ...+.+.++|+||..- |...+ +.... .
T Consensus 11 G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~~~~d~vv~sp~i~~~~p~~~~a~~~~i~i~ 90 (433)
T TIGR01087 11 GRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLHLEDLNNADLVVKSPGIPPDHPLVQAAAKRGIPVV 90 (433)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCchHHhccCCEEEECCCCCCCCHHHHHHHHCCCcEE
Confidence 678999999999999999976542 22 1 22 23654321 2245567899888865 22221 22211 0
Q ss_pred CCccc-cccCCCCcEEEeccCCCchhHHHHHHHHHhcCCcEEeecccCC
Q psy755 66 GSDGI-LKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGG 113 (183)
Q Consensus 66 ~~~~l-~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 113 (183)
...++ ...+....+-|-.|+++..+..-+...+...|..+.-+.-.+.
T Consensus 91 ~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gnig~ 139 (433)
T TIGR01087 91 GDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNIGT 139 (433)
T ss_pred EHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECccCH
Confidence 00111 1222222344566677788888888888887765544333333
No 389
>PRK07035 short chain dehydrogenase; Provisional
Probab=91.83 E-value=0.71 Score=34.49 Aligned_cols=30 Identities=33% Similarity=0.542 Sum_probs=25.6
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
+|.++++.|++.|++|++.+|++++.+.+.
T Consensus 20 IG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~ 49 (252)
T PRK07035 20 IGEAIAKLLAQQGAHVIVSSRKLDGCQAVA 49 (252)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999987766543
No 390
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=91.79 E-value=1.4 Score=33.63 Aligned_cols=77 Identities=18% Similarity=0.195 Sum_probs=46.7
Q ss_pred cHHHHHHHHhCCCc-EEEEcCCchhHHHHHHcCCcccC---CHHHHh------ccCCEEEEecCChHHHHHHhcCCcccc
Q psy755 2 GSHMARNLLKNGHD-VIVYDKNTDASQTLAKEGANMAL---SLSTLA------SGAEFIISMLPASQDVLDAYDGSDGIL 71 (183)
Q Consensus 2 G~~iA~~l~~~g~~-V~~~~~~~~~~~~~~~~g~~~~~---~~~~~~------~~adiVi~~vp~~~~~~~v~~~~~~l~ 71 (183)
|...++.+...|.+ |++.++++++.+.+.+.|....- +..+.+ ...|+||-++..+..++.. .
T Consensus 133 G~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~~~~~~~-------~ 205 (280)
T TIGR03366 133 GLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGATAAVRAC-------L 205 (280)
T ss_pred HHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCChHHHHHH-------H
Confidence 55666666677886 88889999988888777753221 111111 2478888888654444443 2
Q ss_pred ccCCCCcEEEeccC
Q psy755 72 KHAKPGVIVIDSST 85 (183)
Q Consensus 72 ~~l~~~~iiid~s~ 85 (183)
+.++++..++..+.
T Consensus 206 ~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 206 ESLDVGGTAVLAGS 219 (280)
T ss_pred HHhcCCCEEEEecc
Confidence 44556555555543
No 391
>PRK06194 hypothetical protein; Provisional
Probab=91.77 E-value=0.65 Score=35.46 Aligned_cols=30 Identities=23% Similarity=0.233 Sum_probs=25.4
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
+|..+++.|++.|++|++.+|+++..++..
T Consensus 18 IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 47 (287)
T PRK06194 18 FGLAFARIGAALGMKLVLADVQQDALDRAV 47 (287)
T ss_pred HHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Confidence 589999999999999999999887665543
No 392
>KOG1370|consensus
Probab=91.76 E-value=1.1 Score=35.09 Aligned_cols=81 Identities=19% Similarity=0.227 Sum_probs=59.2
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEEE
Q psy755 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVI 81 (183)
Q Consensus 2 G~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~iii 81 (183)
|..-|..|...|..|++...+|-.+-.+.=+|.+.. +++|+++..|+++.++.... ++. .+-...++.+.||.
T Consensus 226 GKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~-tm~ea~~e~difVTtTGc~d----ii~--~~H~~~mk~d~IvC 298 (434)
T KOG1370|consen 226 GKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVT-TLEEAIREVDIFVTTTGCKD----IIT--GEHFDQMKNDAIVC 298 (434)
T ss_pred chhHHHHHhhcCcEEEEeccCchHHHHHHhhccEee-eHHHhhhcCCEEEEccCCcc----hhh--HHHHHhCcCCcEEe
Confidence 677788999999999999999975444443465544 89999999999999986532 221 34456788899998
Q ss_pred eccCCCch
Q psy755 82 DSSTVDPQ 89 (183)
Q Consensus 82 d~s~~~~~ 89 (183)
+.+-....
T Consensus 299 N~Ghfd~E 306 (434)
T KOG1370|consen 299 NIGHFDTE 306 (434)
T ss_pred ccccccce
Confidence 87765433
No 393
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=91.75 E-value=2.1 Score=31.77 Aligned_cols=98 Identities=14% Similarity=0.147 Sum_probs=58.0
Q ss_pred CcHHHHHHHHhCCCcE-EEEcCCc----------hhHHHHHHcC-CcccC-----CHHHH-hccCCEEEEecCChHHHHH
Q psy755 1 MGSHMARNLLKNGHDV-IVYDKNT----------DASQTLAKEG-ANMAL-----SLSTL-ASGAEFIISMLPASQDVLD 62 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V-~~~~~~~----------~~~~~~~~~g-~~~~~-----~~~~~-~~~adiVi~~vp~~~~~~~ 62 (183)
.|+.+|+.|.+.|..| .+.|.+. +.++...+.+ ....+ +..++ -.+||+++.|.+.+.-..
T Consensus 34 VG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DVlipaA~~~~i~~- 112 (217)
T cd05211 34 VGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVDIFAPCALGNVIDL- 112 (217)
T ss_pred HHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccccEEeeccccCccCh-
Confidence 3788999999998854 4568877 5555554442 11111 11222 237999999998753222
Q ss_pred HhcCCccccccCCCCcEEEeccCCCchhHHHHHHHHHhcCCcEEee
Q psy755 63 AYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDA 108 (183)
Q Consensus 63 v~~~~~~l~~~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~~ 108 (183)
+..+.+ +-++|+...+. |.+. ...+.+.++|+.+++.
T Consensus 113 ------~~a~~l-~a~~V~e~AN~-p~t~-~a~~~L~~~Gi~v~Pd 149 (217)
T cd05211 113 ------ENAKKL-KAKVVAEGANN-PTTD-EALRILHERGIVVAPD 149 (217)
T ss_pred ------hhHhhc-CccEEEeCCCC-CCCH-HHHHHHHHCCcEEECh
Confidence 222333 24455555443 3333 5677888899887763
No 394
>PRK06172 short chain dehydrogenase; Provisional
Probab=91.67 E-value=0.78 Score=34.27 Aligned_cols=30 Identities=20% Similarity=0.412 Sum_probs=25.7
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
+|..+++.|++.|++|++.+|+++..+++.
T Consensus 19 iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~ 48 (253)
T PRK06172 19 IGRATALAFAREGAKVVVADRDAAGGEETV 48 (253)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 588999999999999999999988765543
No 395
>PRK07677 short chain dehydrogenase; Provisional
Probab=91.64 E-value=0.86 Score=34.09 Aligned_cols=30 Identities=20% Similarity=0.469 Sum_probs=25.6
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 13 iG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~ 42 (252)
T PRK07677 13 MGKAMAKRFAEEGANVVITGRTKEKLEEAK 42 (252)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999987665543
No 396
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=91.63 E-value=0.79 Score=34.06 Aligned_cols=30 Identities=30% Similarity=0.582 Sum_probs=25.4
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 15 iG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 44 (250)
T TIGR03206 15 IGGATCRRFAEEGAKVAVFDLNREAAEKVA 44 (250)
T ss_pred HHHHHHHHHHHCCCEEEEecCCHHHHHHHH
Confidence 488999999999999999999987765543
No 397
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=91.60 E-value=0.3 Score=38.73 Aligned_cols=48 Identities=8% Similarity=0.070 Sum_probs=32.1
Q ss_pred CcHHHHHHHHhCCC-cEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEe
Q psy755 1 MGSHMARNLLKNGH-DVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISM 53 (183)
Q Consensus 1 mG~~iA~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~ 53 (183)
||...+++|.++|. +|++.+|+....+ +... .. ...+....+|+||.|
T Consensus 185 m~~l~a~~L~~~g~~~i~v~nRt~~~~~-~~~~---~~-~~~~~~~~~DvVIs~ 233 (338)
T PRK00676 185 INRKVAYYLQRQGYSRITFCSRQQLTLP-YRTV---VR-EELSFQDPYDVIFFG 233 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCccccc-hhhh---hh-hhhhcccCCCEEEEc
Confidence 78899999999996 6999999985311 1100 00 111334689999986
No 398
>PRK05993 short chain dehydrogenase; Provisional
Probab=91.55 E-value=0.91 Score=34.61 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=26.9
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAK 31 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~ 31 (183)
+|..+++.|++.|++|++.+|+++..+.+..
T Consensus 16 iG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~ 46 (277)
T PRK05993 16 IGAYCARALQSDGWRVFATCRKEEDVAALEA 46 (277)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5889999999999999999999988776654
No 399
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=91.51 E-value=0.43 Score=35.18 Aligned_cols=32 Identities=25% Similarity=0.461 Sum_probs=29.3
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKE 32 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~ 32 (183)
+|.++|++|.+.|.+|.+..|++++++.+.+.
T Consensus 17 IGl~lak~f~elgN~VIi~gR~e~~L~e~~~~ 48 (245)
T COG3967 17 IGLALAKRFLELGNTVIICGRNEERLAEAKAE 48 (245)
T ss_pred hhHHHHHHHHHhCCEEEEecCcHHHHHHHHhc
Confidence 68999999999999999999999999887765
No 400
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.49 E-value=0.9 Score=34.51 Aligned_cols=23 Identities=13% Similarity=0.299 Sum_probs=20.4
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNT 23 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~ 23 (183)
||.++|+.|++.|++|++.+|+.
T Consensus 20 IG~aia~~la~~G~~vil~~r~~ 42 (262)
T PRK07984 20 IAYGIAQAMHREGAELAFTYQND 42 (262)
T ss_pred HHHHHHHHHHHCCCEEEEEecch
Confidence 58899999999999999888873
No 401
>KOG1201|consensus
Probab=91.47 E-value=0.87 Score=35.33 Aligned_cols=75 Identities=15% Similarity=0.305 Sum_probs=50.0
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
+|+.||..+++.|..+++||.+.+..+.-.+. ..+. ..+..-.+=+.+..++.... +++.+...+=.++
T Consensus 50 lGr~ialefa~rg~~~vl~Din~~~~~etv~~-------~~~~-g~~~~y~cdis~~eei~~~a---~~Vk~e~G~V~IL 118 (300)
T KOG1201|consen 50 LGRLIALEFAKRGAKLVLWDINKQGNEETVKE-------IRKI-GEAKAYTCDISDREEIYRLA---KKVKKEVGDVDIL 118 (300)
T ss_pred HHHHHHHHHHHhCCeEEEEeccccchHHHHHH-------HHhc-CceeEEEecCCCHHHHHHHH---HHHHHhcCCceEE
Confidence 58999999999999999999999865543322 0000 13445555566667777765 6666666666677
Q ss_pred EeccCC
Q psy755 81 IDSSTV 86 (183)
Q Consensus 81 id~s~~ 86 (183)
|+..+.
T Consensus 119 VNNAGI 124 (300)
T KOG1201|consen 119 VNNAGI 124 (300)
T ss_pred Eecccc
Confidence 766554
No 402
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=91.43 E-value=0.25 Score=39.21 Aligned_cols=78 Identities=14% Similarity=0.087 Sum_probs=42.8
Q ss_pred cHHHHHHHHhCCCcEEE--EcCCchhHH-HHHHcC--Cccc-CCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCC
Q psy755 2 GSHMARNLLKNGHDVIV--YDKNTDASQ-TLAKEG--ANMA-LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAK 75 (183)
Q Consensus 2 G~~iA~~l~~~g~~V~~--~~~~~~~~~-~~~~~g--~~~~-~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~ 75 (183)
|..+.+.|.+.+|++.- +-.+.++.. .+...+ .... .+..+ ++++|+||+++|.... .... +. ...
T Consensus 17 G~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~~~~~-~~~vD~vFla~p~~~s-~~~v---~~---~~~ 88 (336)
T PRK05671 17 GEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFD-FSQVQLAFFAAGAAVS-RSFA---EK---ARA 88 (336)
T ss_pred HHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeCChHH-hcCCCEEEEcCCHHHH-HHHH---HH---HHH
Confidence 67788888877774332 223332221 111111 1111 12233 4789999999996543 2332 22 235
Q ss_pred CCcEEEeccCCC
Q psy755 76 PGVIVIDSSTVD 87 (183)
Q Consensus 76 ~~~iiid~s~~~ 87 (183)
.|..+||.|+..
T Consensus 89 ~G~~VIDlS~~f 100 (336)
T PRK05671 89 AGCSVIDLSGAL 100 (336)
T ss_pred CCCeEEECchhh
Confidence 688999999764
No 403
>PRK08267 short chain dehydrogenase; Provisional
Probab=91.42 E-value=1 Score=33.79 Aligned_cols=31 Identities=29% Similarity=0.314 Sum_probs=26.9
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAK 31 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~ 31 (183)
+|..+++.|++.|++|++.+|+++..+.+..
T Consensus 13 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 43 (260)
T PRK08267 13 IGRATALLFAAEGWRVGAYDINEAGLAALAA 43 (260)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999987776644
No 404
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.39 E-value=0.7 Score=34.33 Aligned_cols=30 Identities=33% Similarity=0.618 Sum_probs=25.7
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 17 iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~ 46 (251)
T PRK07231 17 IGEGIARRFAAEGARVVVTDRNEEAAERVA 46 (251)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 588999999999999999999998765543
No 405
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=91.38 E-value=0.18 Score=36.74 Aligned_cols=72 Identities=24% Similarity=0.310 Sum_probs=41.8
Q ss_pred HHHHHhCCCcEEEEcCCchhHHHHHH----cCCcc---cCCHHH--HhccCCEEEEec----CChHHHHHHhcCCccccc
Q psy755 6 ARNLLKNGHDVIVYDKNTDASQTLAK----EGANM---ALSLST--LASGAEFIISML----PASQDVLDAYDGSDGILK 72 (183)
Q Consensus 6 A~~l~~~g~~V~~~~~~~~~~~~~~~----~g~~~---~~~~~~--~~~~adiVi~~v----p~~~~~~~v~~~~~~l~~ 72 (183)
+.-|++.|++|..+|.|+..++.+.+ .++.. ..++.+ .-..-|+|+.++ -.+...+.++ +.+..
T Consensus 45 alyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD~I~st~v~~fL~~~~~~~i~---~~m~~ 121 (192)
T PF03848_consen 45 ALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYDFIVSTVVFMFLQRELRPQII---ENMKA 121 (192)
T ss_dssp HHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEEEEEEESSGGGS-GGGHHHHH---HHHHH
T ss_pred HHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcCEEEEEEEeccCCHHHHHHHH---HHHHh
Confidence 45689999999999999988766543 23321 112211 113467777543 2234455666 67777
Q ss_pred cCCCCcEE
Q psy755 73 HAKPGVIV 80 (183)
Q Consensus 73 ~l~~~~ii 80 (183)
.+++|...
T Consensus 122 ~~~pGG~~ 129 (192)
T PF03848_consen 122 ATKPGGYN 129 (192)
T ss_dssp TEEEEEEE
T ss_pred hcCCcEEE
Confidence 77777653
No 406
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=91.29 E-value=1 Score=34.00 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=25.6
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
+|.++++.|++.|++|++.+|++++.+...
T Consensus 22 iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~ 51 (265)
T PRK07097 22 IGFAIAKAYAKAGATIVFNDINQELVDKGL 51 (265)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 588999999999999999999988766543
No 407
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.29 E-value=3.2 Score=34.51 Aligned_cols=53 Identities=28% Similarity=0.372 Sum_probs=31.7
Q ss_pred cHHHHHHHHhCCCcEEEEcCCch-h----HHHHHHcCCcccC-CHHHHhccCCEEEEec
Q psy755 2 GSHMARNLLKNGHDVIVYDKNTD-A----SQTLAKEGANMAL-SLSTLASGAEFIISML 54 (183)
Q Consensus 2 G~~iA~~l~~~g~~V~~~~~~~~-~----~~~~~~~g~~~~~-~~~~~~~~adiVi~~v 54 (183)
|.++|..|.+.|++|+++|+++. . .+.+.+.|+.... ...+....+|+||++.
T Consensus 28 G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~ 86 (480)
T PRK01438 28 GFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSP 86 (480)
T ss_pred HHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECC
Confidence 67789999999999999996653 1 2334444554321 1111233466666655
No 408
>PRK09186 flagellin modification protein A; Provisional
Probab=91.28 E-value=0.91 Score=33.91 Aligned_cols=30 Identities=30% Similarity=0.462 Sum_probs=26.0
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
+|..+|+.|++.|++|++.+|++++.+.+.
T Consensus 16 iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~ 45 (256)
T PRK09186 16 IGSALVKAILEAGGIVIAADIDKEALNELL 45 (256)
T ss_pred HHHHHHHHHHHCCCEEEEEecChHHHHHHH
Confidence 589999999999999999999988766543
No 409
>PRK12829 short chain dehydrogenase; Provisional
Probab=91.26 E-value=0.94 Score=33.96 Aligned_cols=30 Identities=27% Similarity=0.331 Sum_probs=25.4
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
+|..+++.|+++|++|++.+|+++..+.+.
T Consensus 23 iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~ 52 (264)
T PRK12829 23 IGRAIAEAFAEAGARVHVCDVSEAALAATA 52 (264)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 588999999999999999999987665544
No 410
>PRK10537 voltage-gated potassium channel; Provisional
Probab=91.21 E-value=1.8 Score=35.18 Aligned_cols=97 Identities=13% Similarity=0.004 Sum_probs=54.3
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCC--cccC-CHHHH-----hccCCEEEEecCChHHHHHHhcCCccccc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGA--NMAL-SLSTL-----ASGAEFIISMLPASQDVLDAYDGSDGILK 72 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~--~~~~-~~~~~-----~~~adiVi~~vp~~~~~~~v~~~~~~l~~ 72 (183)
+|..+++.|.+.|+++++.+.+. .+...+.+. ...+ +.++. +++|+.|+++++++..--.+. ....
T Consensus 251 lg~~v~~~L~~~g~~vvVId~d~--~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~iv---L~ar- 324 (393)
T PRK10537 251 LAINTYLGLRQRGQAVTVIVPLG--LEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNAFVV---LAAK- 324 (393)
T ss_pred HHHHHHHHHHHCCCCEEEEECch--hhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHHHHH---HHHH-
Confidence 36788999999999999888653 333333332 1111 22222 468999999998765443333 2222
Q ss_pred cCCC-CcEEEeccCCCchhHHHHHHHHHhcCCcEEeec
Q psy755 73 HAKP-GVIVIDSSTVDPQVPQTLSNLAREKQITFLDAP 109 (183)
Q Consensus 73 ~l~~-~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~~~ 109 (183)
.+.+ .++++-..+ ....+.+++.|...+=.|
T Consensus 325 ~l~p~~kIIa~v~~------~~~~~~L~~~GaD~VIsp 356 (393)
T PRK10537 325 EMSSDVKTVAAVND------SKNLEKIKRVHPDMIFSP 356 (393)
T ss_pred HhCCCCcEEEEECC------HHHHHHHHhcCCCEEECH
Confidence 3334 456554443 233455566676655433
No 411
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=91.19 E-value=2 Score=32.49 Aligned_cols=98 Identities=19% Similarity=0.228 Sum_probs=58.0
Q ss_pred HHHHHHhCCCc-EEEEcCCchhHHHHHHc----CCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcE
Q psy755 5 MARNLLKNGHD-VIVYDKNTDASQTLAKE----GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 79 (183)
Q Consensus 5 iA~~l~~~g~~-V~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~i 79 (183)
++..+++.|.. |++.|.|+..++.+.+. ++...-...+.-...|+|+..... ..+..++ +.+...+++|..
T Consensus 133 l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvani~~-~~~~~l~---~~~~~~LkpgG~ 208 (250)
T PRK00517 133 LAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVANILA-NPLLELA---PDLARLLKPGGR 208 (250)
T ss_pred HHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEcCcH-HHHHHHH---HHHHHhcCCCcE
Confidence 34445666764 99999999987766543 321000000000047998876643 4455555 777888988877
Q ss_pred EEeccCCCchhHHHHHHHHHhcCCcEEe
Q psy755 80 VIDSSTVDPQVPQTLSNLAREKQITFLD 107 (183)
Q Consensus 80 iid~s~~~~~~~~~~~~~~~~~g~~~~~ 107 (183)
++-. .........+.+.+.+.|+..+.
T Consensus 209 lils-gi~~~~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 209 LILS-GILEEQADEVLEAYEEAGFTLDE 235 (250)
T ss_pred EEEE-ECcHhhHHHHHHHHHHCCCEEEE
Confidence 6643 33334455667777777776655
No 412
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.18 E-value=0.49 Score=37.17 Aligned_cols=54 Identities=17% Similarity=0.225 Sum_probs=37.1
Q ss_pred CcHHHHHHHHhCCC--cEEEEcCCchhHHHHHHc--------C---CcccCCHHHHhccCCEEEEecC
Q psy755 1 MGSHMARNLLKNGH--DVIVYDKNTDASQTLAKE--------G---ANMALSLSTLASGAEFIISMLP 55 (183)
Q Consensus 1 mG~~iA~~l~~~g~--~V~~~~~~~~~~~~~~~~--------g---~~~~~~~~~~~~~adiVi~~vp 55 (183)
+|.++|..|+..|. +++++|+++++++..... + +....+.++ +++||+||++.-
T Consensus 14 VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG 80 (312)
T cd05293 14 VGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAG 80 (312)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCC
Confidence 47888998888876 799999988765432211 1 122345554 899999999763
No 413
>PRK05872 short chain dehydrogenase; Provisional
Probab=91.14 E-value=1 Score=34.74 Aligned_cols=73 Identities=15% Similarity=0.200 Sum_probs=44.2
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEE--EecCChHHHHHHhcCCccccccCCCCc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFII--SMLPASQDVLDAYDGSDGILKHAKPGV 78 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi--~~vp~~~~~~~v~~~~~~l~~~l~~~~ 78 (183)
+|..+++.|++.|++|++.+|++++.+.+.+.- . ...++.. .-+.+..+++.++ +++...+.+=+
T Consensus 21 IG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l-------~---~~~~~~~~~~Dv~d~~~v~~~~---~~~~~~~g~id 87 (296)
T PRK05872 21 IGAELARRLHARGAKLALVDLEEAELAALAAEL-------G---GDDRVLTVVADVTDLAAMQAAA---EEAVERFGGID 87 (296)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-------c---CCCcEEEEEecCCCHHHHHHHH---HHHHHHcCCCC
Confidence 589999999999999999999998776654321 0 0123332 3334445555554 44444333335
Q ss_pred EEEeccCC
Q psy755 79 IVIDSSTV 86 (183)
Q Consensus 79 iiid~s~~ 86 (183)
++|++...
T Consensus 88 ~vI~nAG~ 95 (296)
T PRK05872 88 VVVANAGI 95 (296)
T ss_pred EEEECCCc
Confidence 56665543
No 414
>PRK05086 malate dehydrogenase; Provisional
Probab=90.92 E-value=1.1 Score=35.31 Aligned_cols=56 Identities=16% Similarity=0.239 Sum_probs=35.0
Q ss_pred CcHHHHHHHHh---CCCcEEEEcCCchhH---HHHHHcC--Ccc----cCCHHHHhccCCEEEEecCC
Q psy755 1 MGSHMARNLLK---NGHDVIVYDKNTDAS---QTLAKEG--ANM----ALSLSTLASGAEFIISMLPA 56 (183)
Q Consensus 1 mG~~iA~~l~~---~g~~V~~~~~~~~~~---~~~~~~g--~~~----~~~~~~~~~~adiVi~~vp~ 56 (183)
+|.+++..|.. .+++++++|+++..- -.+...+ ... .+++.+.++++|+||+|.-.
T Consensus 12 VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~ 79 (312)
T PRK05086 12 IGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGV 79 (312)
T ss_pred HHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCC
Confidence 47788877744 245899999886531 1222211 111 34556778999999999854
No 415
>PLN02253 xanthoxin dehydrogenase
Probab=90.91 E-value=0.92 Score=34.52 Aligned_cols=74 Identities=19% Similarity=0.230 Sum_probs=42.8
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
+|.++++.|++.|++|++.+|+++..+...+.- .. -.+...+-.=+.+...++..+ +.+...+.+=.++
T Consensus 30 IG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~~Dl~d~~~~~~~~---~~~~~~~g~id~l 98 (280)
T PLN02253 30 IGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSL-------GG-EPNVCFFHCDVTVEDDVSRAV---DFTVDKFGTLDIM 98 (280)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHh-------cC-CCceEEEEeecCCHHHHHHHH---HHHHHHhCCCCEE
Confidence 589999999999999999999877655443210 00 011223333344555555554 4444433333556
Q ss_pred EeccC
Q psy755 81 IDSST 85 (183)
Q Consensus 81 id~s~ 85 (183)
|++..
T Consensus 99 i~~Ag 103 (280)
T PLN02253 99 VNNAG 103 (280)
T ss_pred EECCC
Confidence 66554
No 416
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=90.84 E-value=0.51 Score=37.22 Aligned_cols=102 Identities=14% Similarity=0.177 Sum_probs=68.9
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchhHHHHHHc-CC-------cccCCHHHHhccCCEEEEecCChHHHHHHhcCCcccccc
Q psy755 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKE-GA-------NMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKH 73 (183)
Q Consensus 2 G~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~-g~-------~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~ 73 (183)
|.-+|..|++.|.+-.+-.||+.++.++... |- -.-...++.+...++|+-|+-+-. ..+..-+...
T Consensus 19 G~lvae~l~~~g~~~aLAgRs~~kl~~l~~~LG~~~~~~p~~~p~~~~~~~~~~~VVlncvGPyt-----~~g~plv~aC 93 (382)
T COG3268 19 GGLVAEYLAREGLTAALAGRSSAKLDALRASLGPEAAVFPLGVPAALEAMASRTQVVLNCVGPYT-----RYGEPLVAAC 93 (382)
T ss_pred hHHHHHHHHHcCCchhhccCCHHHHHHHHHhcCccccccCCCCHHHHHHHHhcceEEEecccccc-----ccccHHHHHH
Confidence 6678999999999888889999999988765 21 111245677889999999995532 1222334567
Q ss_pred CCCCcEEEeccCCCchhHHHH---HHHHHhcCCcEEee
Q psy755 74 AKPGVIVIDSSTVDPQVPQTL---SNLAREKQITFLDA 108 (183)
Q Consensus 74 l~~~~iiid~s~~~~~~~~~~---~~~~~~~g~~~~~~ 108 (183)
+..|+...|.|.-..---+.+ +....+.|+..+.+
T Consensus 94 ~~~GTdY~DiTGEi~~fe~~i~~yh~~A~~~Ga~Ii~~ 131 (382)
T COG3268 94 AAAGTDYADITGEIMFFENSIDLYHAQAADAGARIIPG 131 (382)
T ss_pred HHhCCCeeeccccHHHHHHHHHHHHHHHHhcCCEEecc
Confidence 778888889887654432222 33444557766663
No 417
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=90.79 E-value=1.5 Score=33.59 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=21.1
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNT 23 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~ 23 (183)
||.++|+.|++.|++|++.+|+.
T Consensus 19 IG~aiA~~la~~G~~Vil~~r~~ 41 (274)
T PRK08415 19 IAYGIAKACFEQGAELAFTYLNE 41 (274)
T ss_pred HHHHHHHHHHHCCCEEEEEecCH
Confidence 68999999999999999999885
No 418
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=90.76 E-value=1.3 Score=33.32 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=21.0
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNT 23 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~ 23 (183)
||.++|+.|++.|++|++.+|+.
T Consensus 21 IG~a~a~~la~~G~~Vi~~~r~~ 43 (252)
T PRK06079 21 IAWGCAQAIKDQGATVIYTYQND 43 (252)
T ss_pred hHHHHHHHHHHCCCEEEEecCch
Confidence 68999999999999999998884
No 419
>PRK06482 short chain dehydrogenase; Provisional
Probab=90.74 E-value=1.2 Score=33.89 Aligned_cols=31 Identities=29% Similarity=0.398 Sum_probs=26.4
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAK 31 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~ 31 (183)
+|+.+++.|++.|++|++.+|+++..+.+.+
T Consensus 14 IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~ 44 (276)
T PRK06482 14 FGRGMTERLLARGDRVAATVRRPDALDDLKA 44 (276)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5889999999999999999999887666543
No 420
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=90.74 E-value=7.2 Score=31.67 Aligned_cols=86 Identities=5% Similarity=0.027 Sum_probs=49.0
Q ss_pred hccCCEEEEecCCh--H---HHHHHhcCCccccccCCCCcEEEeccCC--CchhHHHHHHHHHhcCCcEEeecccCCHHH
Q psy755 44 ASGAEFIISMLPAS--Q---DVLDAYDGSDGILKHAKPGVIVIDSSTV--DPQVPQTLSNLAREKQITFLDAPVSGGTKA 116 (183)
Q Consensus 44 ~~~adiVi~~vp~~--~---~~~~v~~~~~~l~~~l~~~~iiid~s~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 116 (183)
+.++|.|++..|.- . .+..++ +.+...-.+|+.+.-.++. .......+.+.+...|+..+..|+.
T Consensus 298 ~~~~d~ii~GspT~~~~~~~~~~~~l---~~l~~~~~~~K~~a~FGsygw~g~a~~~~~~~l~~~g~~~v~~~~~----- 369 (394)
T PRK11921 298 VFKSKAILVGSSTINRGILSSTAAIL---EEIKGLGFKNKKAAAFGSYGWSGESVKIITERLKKAGFEIVNDGIR----- 369 (394)
T ss_pred HHhCCEEEEECCCcCccccHHHHHHH---HHhhccCcCCCEEEEEecCCCccHHHHHHHHHHHHCCCEEccCcEE-----
Confidence 34799999999872 1 133343 3444433467776544443 2445566777777778877763321
Q ss_pred HhcCceEEEecCCHHHHHHHHHHHHHhc
Q psy755 117 AQEATLTFMVGGDKSSLEKAKPILKCMG 144 (183)
Q Consensus 117 ~~~~~~~~~~~g~~~~~~~~~~l~~~~g 144 (183)
+-...+++..++++++-+.++
T Consensus 370 -------~~~~p~~~~~~~~~~~g~~la 390 (394)
T PRK11921 370 -------ELWNPDDEALDRCRSFGENFA 390 (394)
T ss_pred -------EEeCCCHHHHHHHHHHHHHHH
Confidence 222235566667777666654
No 421
>PRK08339 short chain dehydrogenase; Provisional
Probab=90.67 E-value=0.32 Score=36.85 Aligned_cols=30 Identities=30% Similarity=0.482 Sum_probs=26.1
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
+|.++|+.|++.|++|++.+|++++.+.+.
T Consensus 20 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 49 (263)
T PRK08339 20 IGFGVARVLARAGADVILLSRNEENLKKAR 49 (263)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 689999999999999999999988766544
No 422
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=90.67 E-value=0.29 Score=37.97 Aligned_cols=55 Identities=24% Similarity=0.324 Sum_probs=38.3
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCc-------ccCCHHHHhccCCEEEEecC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGAN-------MALSLSTLASGAEFIISMLP 55 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~-------~~~~~~~~~~~adiVi~~vp 55 (183)
+|+.++..|.+.|++|++.+|+++........++. ..+++.+.++.+|+||-+..
T Consensus 12 iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 12 VGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred hhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence 58899999999999999999987764433222221 11234556778999988763
No 423
>PRK09242 tropinone reductase; Provisional
Probab=90.67 E-value=1.6 Score=32.75 Aligned_cols=30 Identities=30% Similarity=0.506 Sum_probs=25.7
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
+|..+++.|++.|++|++.+|+++..+...
T Consensus 21 IG~~~a~~l~~~G~~v~~~~r~~~~~~~~~ 50 (257)
T PRK09242 21 IGLAIAREFLGLGADVLIVARDADALAQAR 50 (257)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999987766543
No 424
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=90.59 E-value=0.28 Score=35.43 Aligned_cols=44 Identities=14% Similarity=0.379 Sum_probs=30.9
Q ss_pred cEEEEcCCchhHHHHHH--------cC----CcccCCHHHHhccCCEEEEecCChH
Q psy755 15 DVIVYDKNTDASQTLAK--------EG----ANMALSLSTLASGAEFIISMLPASQ 58 (183)
Q Consensus 15 ~V~~~~~~~~~~~~~~~--------~g----~~~~~~~~~~~~~adiVi~~vp~~~ 58 (183)
+++++|+++++++...+ .+ +..+++.+++++++|.||.++-.+-
T Consensus 30 ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~irvGg 85 (183)
T PF02056_consen 30 EIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVINQIRVGG 85 (183)
T ss_dssp EEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE---TTH
T ss_pred EEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEEEeeecc
Confidence 79999999998764332 12 3557899999999999999996653
No 425
>PRK06270 homoserine dehydrogenase; Provisional
Probab=90.57 E-value=1.5 Score=34.94 Aligned_cols=72 Identities=21% Similarity=0.241 Sum_probs=41.3
Q ss_pred CCHHHHhc--cCCEEEEecCChHHH-HHHhcCCccccccCCCCcEEEeccC-CCchhHHHHHHHHHhcCCcEEe-ecccC
Q psy755 38 LSLSTLAS--GAEFIISMLPASQDV-LDAYDGSDGILKHAKPGVIVIDSST-VDPQVPQTLSNLAREKQITFLD-APVSG 112 (183)
Q Consensus 38 ~~~~~~~~--~adiVi~~vp~~~~~-~~v~~~~~~l~~~l~~~~iiid~s~-~~~~~~~~~~~~~~~~g~~~~~-~~~~~ 112 (183)
.+..+++. +.|+|+.++|...+. .... +-+...+..|+.|+-.+. ........+.+..++.|..|.- +.+.+
T Consensus 79 ~d~~ell~~~~~DvVvd~T~s~~~~~~~a~---~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ea~v~~ 155 (341)
T PRK06270 79 ISGLEVIRSVDADVVVEATPTNIETGEPAL---SHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRYEATVGG 155 (341)
T ss_pred CCHHHHhhccCCCEEEECCcCcccccchHH---HHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEEeeeeee
Confidence 36777763 689999999864321 1111 222456778888874432 1122345666777777776653 44443
No 426
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=90.57 E-value=1.6 Score=30.58 Aligned_cols=60 Identities=13% Similarity=0.060 Sum_probs=36.2
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchhHHHHHHcC-Ccc-cCCH-HHHhccCCEEEEecCChHHHHHHh
Q psy755 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKEG-ANM-ALSL-STLASGAEFIISMLPASQDVLDAY 64 (183)
Q Consensus 2 G~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g-~~~-~~~~-~~~~~~adiVi~~vp~~~~~~~v~ 64 (183)
|...++.|.+.|++|++++ ++..+.+.+.+ +.. ...+ ++.++++|+||.++.+++ +...+
T Consensus 25 a~rka~~Ll~~ga~V~VIs--p~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~e-~N~~i 87 (157)
T PRK06719 25 AYRKASGLKDTGAFVTVVS--PEICKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQHA-VNMMV 87 (157)
T ss_pred HHHHHHHHHhCCCEEEEEc--CccCHHHHhccCcEEEecccChhcCCCceEEEECCCCHH-HHHHH
Confidence 4456777889999999995 44344444432 111 1112 234678999999997644 44433
No 427
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=90.56 E-value=4 Score=29.99 Aligned_cols=56 Identities=23% Similarity=0.253 Sum_probs=36.9
Q ss_pred cHHHHHHHHhCCCcEEEEcCCch-hHHHHHHcC-Ccc--cCCHHHHhccCCEEEEecCCh
Q psy755 2 GSHMARNLLKNGHDVIVYDKNTD-ASQTLAKEG-ANM--ALSLSTLASGAEFIISMLPAS 57 (183)
Q Consensus 2 G~~iA~~l~~~g~~V~~~~~~~~-~~~~~~~~g-~~~--~~~~~~~~~~adiVi~~vp~~ 57 (183)
|..-++.|.+.|.+|++++.+.. .++.+.+.+ +.. .+-..+.+.++++||.++.++
T Consensus 21 a~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~ 80 (205)
T TIGR01470 21 ALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDE 80 (205)
T ss_pred HHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCH
Confidence 34456778899999999987654 345555543 221 111134578999999998775
No 428
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=90.56 E-value=3.9 Score=33.88 Aligned_cols=111 Identities=22% Similarity=0.240 Sum_probs=64.0
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchh----HHHHHHcCCcccC--CHHHHhccCCEEEEec--CChHH-HHHHh-cCC----
Q psy755 2 GSHMARNLLKNGHDVIVYDKNTDA----SQTLAKEGANMAL--SLSTLASGAEFIISML--PASQD-VLDAY-DGS---- 67 (183)
Q Consensus 2 G~~iA~~l~~~g~~V~~~~~~~~~----~~~~~~~g~~~~~--~~~~~~~~adiVi~~v--p~~~~-~~~v~-~~~---- 67 (183)
|.+.++.|.+.|++|+++|.++.. ...+...++.... ...+...++|+|+..= |.... ++... +|.
T Consensus 19 G~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p~v~~A~~~gi~i~~ 98 (448)
T COG0771 19 GLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHPLVEAAKAAGIEIIG 98 (448)
T ss_pred cHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCHHHHHHHHcCCcEEe
Confidence 789999999999999999976665 1222234543321 1225677899999863 33222 22211 000
Q ss_pred -ccccccCC-CCcE-EEeccCCCchhHHHHHHHHHhcCCcEEeecccC
Q psy755 68 -DGILKHAK-PGVI-VIDSSTVDPQVPQTLSNLAREKQITFLDAPVSG 112 (183)
Q Consensus 68 -~~l~~~l~-~~~i-iid~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 112 (183)
-++..... +..+ -|-.|+++..+..-+...+.+.|....-+.-.|
T Consensus 99 dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG 146 (448)
T COG0771 99 DIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIG 146 (448)
T ss_pred HHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccC
Confidence 01122221 2333 466667788888888888888877544444333
No 429
>PRK06138 short chain dehydrogenase; Provisional
Probab=90.55 E-value=1.1 Score=33.30 Aligned_cols=75 Identities=16% Similarity=0.168 Sum_probs=43.3
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
+|..+++.|++.|++|++.+|+.+..+...+.- . . -....++..-+.++..++..+ +.+.+.+.+=..|
T Consensus 17 iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~-~-~------~~~~~~~~~D~~~~~~~~~~~---~~i~~~~~~id~v 85 (252)
T PRK06138 17 IGRATAKLFAREGARVVVADRDAEAAERVAAAI-A-A------GGRAFARQGDVGSAEAVEALV---DFVAARWGRLDVL 85 (252)
T ss_pred HHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHH-h-c------CCeEEEEEcCCCCHHHHHHHH---HHHHHHcCCCCEE
Confidence 588999999999999999999987655443221 0 0 001122223334445555554 4444444444566
Q ss_pred EeccCC
Q psy755 81 IDSSTV 86 (183)
Q Consensus 81 id~s~~ 86 (183)
+++...
T Consensus 86 i~~ag~ 91 (252)
T PRK06138 86 VNNAGF 91 (252)
T ss_pred EECCCC
Confidence 666653
No 430
>PRK06949 short chain dehydrogenase; Provisional
Probab=90.48 E-value=1.3 Score=33.12 Aligned_cols=30 Identities=20% Similarity=0.436 Sum_probs=25.9
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 21 IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~ 50 (258)
T PRK06949 21 LGARFAQVLAQAGAKVVLASRRVERLKELR 50 (258)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 588999999999999999999988766554
No 431
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=90.48 E-value=1.1 Score=33.51 Aligned_cols=29 Identities=24% Similarity=0.471 Sum_probs=24.8
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTL 29 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~ 29 (183)
+|.++++.|++.|++|++.+|++.+.+..
T Consensus 14 IG~~la~~l~~~g~~vi~~~r~~~~~~~~ 42 (259)
T PRK12384 14 LGAFLCHGLAEEGYRVAVADINSEKAANV 42 (259)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 58899999999999999999998765544
No 432
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=90.48 E-value=0.4 Score=34.67 Aligned_cols=56 Identities=25% Similarity=0.310 Sum_probs=40.5
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchhHHHHHH-----cCCcccCCHHHHhccCCEEEEecCCh
Q psy755 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAK-----EGANMALSLSTLASGAEFIISMLPAS 57 (183)
Q Consensus 2 G~~iA~~l~~~g~~V~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~adiVi~~vp~~ 57 (183)
|.-|+.-..+.||+|+..-||+.+...... ..+--.+++.+.+.+-|+||.+....
T Consensus 13 Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 13 GSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred HHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence 677888888999999999999998755311 11222234456788999999998543
No 433
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=90.44 E-value=0.71 Score=37.75 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=39.0
Q ss_pred HHHHHHHHhCC-CcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChH
Q psy755 3 SHMARNLLKNG-HDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQ 58 (183)
Q Consensus 3 ~~iA~~l~~~g-~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~ 58 (183)
..+++.|.+.| .+|.+||.--...+.... +.....++.++++++|.|++.++.++
T Consensus 343 ~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~-~~~~~~~~~~~~~~ad~vvi~t~~~~ 398 (415)
T PRK11064 343 MEIAELIAQWHSGETLVVEPNIHQLPKKLD-GLVTLVSLDEALATADVLVMLVDHSQ 398 (415)
T ss_pred HHHHHHHHhcCCcEEEEECCCCCchhhhcc-CceeeCCHHHHHhCCCEEEECCCCHH
Confidence 45788999996 999999976433222111 12234688889999999999998854
No 434
>PRK05855 short chain dehydrogenase; Validated
Probab=90.42 E-value=0.77 Score=38.66 Aligned_cols=30 Identities=23% Similarity=0.409 Sum_probs=26.0
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
+|.++++.|++.|++|++.+|+.++.+.+.
T Consensus 327 iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~ 356 (582)
T PRK05855 327 IGRETALAFAREGAEVVASDIDEAAAERTA 356 (582)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999987766543
No 435
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=90.36 E-value=1.6 Score=34.52 Aligned_cols=76 Identities=22% Similarity=0.240 Sum_probs=46.1
Q ss_pred cHHHHHHHHhCCCcEEEEcC---CchhHHHHHHcCCcccCC----HHH--HhccCCEEEEecCChHHHHHHhcCCccccc
Q psy755 2 GSHMARNLLKNGHDVIVYDK---NTDASQTLAKEGANMALS----LST--LASGAEFIISMLPASQDVLDAYDGSDGILK 72 (183)
Q Consensus 2 G~~iA~~l~~~g~~V~~~~~---~~~~~~~~~~~g~~~~~~----~~~--~~~~adiVi~~vp~~~~~~~v~~~~~~l~~ 72 (183)
|...++.+...|.+|++.++ ++++.+.+.+.|...... ..+ .....|+||-++..+..+... ..
T Consensus 185 G~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~-------~~ 257 (355)
T cd08230 185 GLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPPLAFEA-------LP 257 (355)
T ss_pred HHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHHHHHHH-------HH
Confidence 55555666677889999988 577777777777543211 111 123579999999764433333 34
Q ss_pred cCCCCcEEEecc
Q psy755 73 HAKPGVIVIDSS 84 (183)
Q Consensus 73 ~l~~~~iiid~s 84 (183)
.++++..++..+
T Consensus 258 ~l~~~G~~v~~G 269 (355)
T cd08230 258 ALAPNGVVILFG 269 (355)
T ss_pred HccCCcEEEEEe
Confidence 556655555444
No 436
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=90.25 E-value=2.1 Score=33.79 Aligned_cols=77 Identities=9% Similarity=0.129 Sum_probs=47.9
Q ss_pred cHHHHHHHHhCCC-cEEEEcCCchhHHHHHHcCCccc-----CCHHHHhc---cCCEEEEecCChHHHHHHhcCCccccc
Q psy755 2 GSHMARNLLKNGH-DVIVYDKNTDASQTLAKEGANMA-----LSLSTLAS---GAEFIISMLPASQDVLDAYDGSDGILK 72 (183)
Q Consensus 2 G~~iA~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~-----~~~~~~~~---~adiVi~~vp~~~~~~~v~~~~~~l~~ 72 (183)
|....+.+...|. +|++.++++++.+.+.+.|.... ++..+..+ ..|+||-++..+..+... ..
T Consensus 182 G~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~~~~~~~-------~~ 254 (343)
T PRK09880 182 GCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHPSSINTC-------LE 254 (343)
T ss_pred HHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCHHHHHHH-------HH
Confidence 4455555556687 58889999999998888875321 12233222 278999998764444333 34
Q ss_pred cCCCCcEEEeccC
Q psy755 73 HAKPGVIVIDSST 85 (183)
Q Consensus 73 ~l~~~~iiid~s~ 85 (183)
.++++..++..+.
T Consensus 255 ~l~~~G~iv~~G~ 267 (343)
T PRK09880 255 VTRAKGVMVQVGM 267 (343)
T ss_pred HhhcCCEEEEEcc
Confidence 5666666666553
No 437
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=90.25 E-value=0.49 Score=37.73 Aligned_cols=80 Identities=13% Similarity=0.177 Sum_probs=46.3
Q ss_pred CcHHHHHHHHhCCC-cEEEEcCCchhHHHHHH----c-----------CCcccCCHHHHhccCCEEEEecCChHHHHHHh
Q psy755 1 MGSHMARNLLKNGH-DVIVYDKNTDASQTLAK----E-----------GANMALSLSTLASGAEFIISMLPASQDVLDAY 64 (183)
Q Consensus 1 mG~~iA~~l~~~g~-~V~~~~~~~~~~~~~~~----~-----------g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~ 64 (183)
+|..+.+.|.++.. +++...+++.+..+-.. . .........+.+.++|+||.++|.... ....
T Consensus 15 iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~p~~~s-~~~~ 93 (349)
T PRK08664 15 VGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAVDDVDIVFSALPSDVA-GEVE 93 (349)
T ss_pred HHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHHhcCCCEEEEeCChhHH-HHHH
Confidence 47888888887655 78877555543221111 0 011111122334789999999998644 3332
Q ss_pred cCCccccccCCCCcEEEeccCCC
Q psy755 65 DGSDGILKHAKPGVIVIDSSTVD 87 (183)
Q Consensus 65 ~~~~~l~~~l~~~~iiid~s~~~ 87 (183)
+. ....|..+||.|+..
T Consensus 94 ---~~---~~~~G~~vIDls~~f 110 (349)
T PRK08664 94 ---EE---FAKAGKPVFSNASAH 110 (349)
T ss_pred ---HH---HHHCCCEEEECCchh
Confidence 22 234678899999753
No 438
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=90.22 E-value=0.98 Score=35.29 Aligned_cols=31 Identities=29% Similarity=0.383 Sum_probs=26.4
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAK 31 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~ 31 (183)
||..+++.|++.|++|++.+|+.++.+.+.+
T Consensus 18 IG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~ 48 (322)
T PRK07453 18 VGLYAAKALAKRGWHVIMACRNLKKAEAAAQ 48 (322)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5889999999999999999999887665543
No 439
>PRK08263 short chain dehydrogenase; Provisional
Probab=90.17 E-value=1.4 Score=33.54 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=26.3
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAK 31 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~ 31 (183)
+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 15 iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~ 45 (275)
T PRK08263 15 FGRAWTEAALERGDRVVATARDTATLADLAE 45 (275)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5889999999999999999999887665543
No 440
>KOG0725|consensus
Probab=90.16 E-value=1.1 Score=34.53 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=27.5
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAK 31 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~ 31 (183)
||+++|..|++.|.+|++.+|++++.+....
T Consensus 20 IG~aia~~la~~Ga~v~i~~r~~~~~~~~~~ 50 (270)
T KOG0725|consen 20 IGKAIALLLAKAGAKVVITGRSEERLEETAQ 50 (270)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 6899999999999999999999998766554
No 441
>PRK06114 short chain dehydrogenase; Provisional
Probab=90.14 E-value=1.5 Score=32.91 Aligned_cols=24 Identities=38% Similarity=0.652 Sum_probs=21.5
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCch
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTD 24 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~ 24 (183)
+|.++++.|++.|++|++.+|+++
T Consensus 20 IG~~ia~~l~~~G~~v~~~~r~~~ 43 (254)
T PRK06114 20 IGQRIAIGLAQAGADVALFDLRTD 43 (254)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCcc
Confidence 589999999999999999998764
No 442
>PRK05650 short chain dehydrogenase; Provisional
Probab=90.12 E-value=1.4 Score=33.35 Aligned_cols=30 Identities=17% Similarity=0.319 Sum_probs=25.7
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
+|..+++.|++.|++|++.+|+.++.+.+.
T Consensus 12 IG~~la~~l~~~g~~V~~~~r~~~~~~~~~ 41 (270)
T PRK05650 12 LGRAIALRWAREGWRLALADVNEEGGEETL 41 (270)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 588999999999999999999987766543
No 443
>PRK06398 aldose dehydrogenase; Validated
Probab=90.08 E-value=0.88 Score=34.30 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=22.1
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchh
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDA 25 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~ 25 (183)
+|.++++.|++.|++|++.+|++..
T Consensus 18 IG~~ia~~l~~~G~~Vi~~~r~~~~ 42 (258)
T PRK06398 18 IGKAVVNRLKEEGSNVINFDIKEPS 42 (258)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCccc
Confidence 5899999999999999999988653
No 444
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.02 E-value=0.59 Score=36.63 Aligned_cols=56 Identities=16% Similarity=0.209 Sum_probs=38.4
Q ss_pred CcHHHHHHHHhCCC--cEEEEcCCchhHHHHHHc-----------CCcccCCHHHHhccCCEEEEecCC
Q psy755 1 MGSHMARNLLKNGH--DVIVYDKNTDASQTLAKE-----------GANMALSLSTLASGAEFIISMLPA 56 (183)
Q Consensus 1 mG~~iA~~l~~~g~--~V~~~~~~~~~~~~~~~~-----------g~~~~~~~~~~~~~adiVi~~vp~ 56 (183)
+|.++|..|+..+. +++++|+++++++..... ......+..+.+++||+||++.-.
T Consensus 10 VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~ 78 (307)
T cd05290 10 VGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGP 78 (307)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCC
Confidence 47889999988876 799999988765332211 112222345678999999998854
No 445
>PRK07856 short chain dehydrogenase; Provisional
Probab=90.00 E-value=1.1 Score=33.58 Aligned_cols=25 Identities=28% Similarity=0.555 Sum_probs=22.3
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchh
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDA 25 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~ 25 (183)
+|..+++.|++.|++|++.+|++++
T Consensus 18 IG~~la~~l~~~g~~v~~~~r~~~~ 42 (252)
T PRK07856 18 IGAGIARAFLAAGATVVVCGRRAPE 42 (252)
T ss_pred HHHHHHHHHHHCCCEEEEEeCChhh
Confidence 5899999999999999999998764
No 446
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.00 E-value=1.2 Score=33.01 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=24.7
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTL 29 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~ 29 (183)
+|..+++.|++.|++|++.+|++++.+..
T Consensus 17 iG~~~a~~l~~~G~~vi~~~r~~~~~~~~ 45 (253)
T PRK08217 17 LGRAMAEYLAQKGAKLALIDLNQEKLEEA 45 (253)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 58899999999999999999998765544
No 447
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=89.93 E-value=1.5 Score=36.25 Aligned_cols=56 Identities=11% Similarity=0.157 Sum_probs=39.3
Q ss_pred CcHHHHHHHHhC-------CC--cEEEEcCCchhHHHHHH--------c--CCcccCCHHHHhccCCEEEEecCC
Q psy755 1 MGSHMARNLLKN-------GH--DVIVYDKNTDASQTLAK--------E--GANMALSLSTLASGAEFIISMLPA 56 (183)
Q Consensus 1 mG~~iA~~l~~~-------g~--~V~~~~~~~~~~~~~~~--------~--g~~~~~~~~~~~~~adiVi~~vp~ 56 (183)
+|.++|-.|+.. |. +++++|++.++++...- . .+....+..+.+++||+||++.-.
T Consensus 112 VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDiVVitAG~ 186 (444)
T PLN00112 112 ISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEWALLIGAK 186 (444)
T ss_pred HHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCEEEECCCC
Confidence 377888888877 55 79999999987643221 1 233234556778999999999854
No 448
>PRK06500 short chain dehydrogenase; Provisional
Probab=89.82 E-value=1.7 Score=32.25 Aligned_cols=30 Identities=20% Similarity=0.387 Sum_probs=25.3
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
+|..+++.|++.|++|++.+|+++..+...
T Consensus 18 iG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 47 (249)
T PRK06500 18 IGLETARQFLAEGARVAITGRDPASLEAAR 47 (249)
T ss_pred HHHHHHHHHHHCCCEEEEecCCHHHHHHHH
Confidence 588999999999999999999887665543
No 449
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=89.79 E-value=2 Score=34.25 Aligned_cols=78 Identities=22% Similarity=0.283 Sum_probs=47.9
Q ss_pred cHHHHHHHHhCCC-cEEEEcCCchhHHHHHH-cCCcccCCH-H--------HHh--ccCCEEEEecCChHHHHHHhcCCc
Q psy755 2 GSHMARNLLKNGH-DVIVYDKNTDASQTLAK-EGANMALSL-S--------TLA--SGAEFIISMLPASQDVLDAYDGSD 68 (183)
Q Consensus 2 G~~iA~~l~~~g~-~V~~~~~~~~~~~~~~~-~g~~~~~~~-~--------~~~--~~adiVi~~vp~~~~~~~v~~~~~ 68 (183)
|...+..+...|. +|++.|+++++++.+.+ .+.....+. . +.. ..+|++|.|+..+..+...
T Consensus 181 GLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~~~~~~a----- 255 (350)
T COG1063 181 GLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSPPALDQA----- 255 (350)
T ss_pred HHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCHHHHHHH-----
Confidence 4444555556675 78888999999999988 443322221 1 122 2499999999865444333
Q ss_pred cccccCCCCcEEEeccCC
Q psy755 69 GILKHAKPGVIVIDSSTV 86 (183)
Q Consensus 69 ~l~~~l~~~~iiid~s~~ 86 (183)
...++++-.++..+..
T Consensus 256 --i~~~r~gG~v~~vGv~ 271 (350)
T COG1063 256 --LEALRPGGTVVVVGVY 271 (350)
T ss_pred --HHHhcCCCEEEEEecc
Confidence 3556666665555544
No 450
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=89.78 E-value=1.4 Score=33.13 Aligned_cols=27 Identities=26% Similarity=0.381 Sum_probs=22.3
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQT 28 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~ 28 (183)
+|..+++.|++.|++|++.+|+ ++.+.
T Consensus 27 IG~~ia~~l~~~G~~v~~~~~~-~~~~~ 53 (258)
T PRK06935 27 LGQGYAVALAKAGADIIITTHG-TNWDE 53 (258)
T ss_pred HHHHHHHHHHHCCCEEEEEeCC-cHHHH
Confidence 5899999999999999999888 43333
No 451
>PRK06484 short chain dehydrogenase; Validated
Probab=89.74 E-value=1.2 Score=37.27 Aligned_cols=73 Identities=12% Similarity=0.238 Sum_probs=44.4
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcEE
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 80 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~ii 80 (183)
||.++|+.|++.|++|++.+|++++.+.+.+... .....+-.=+.+...++.++ +.+...+.+=.++
T Consensus 281 IG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~----------~~~~~~~~D~~~~~~~~~~~---~~~~~~~g~id~l 347 (520)
T PRK06484 281 IGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALG----------DEHLSVQADITDEAAVESAF---AQIQARWGRLDVL 347 (520)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC----------CceeEEEccCCCHHHHHHHH---HHHHHHcCCCCEE
Confidence 5899999999999999999999887776654210 01111222233445555555 4444433344566
Q ss_pred EeccCC
Q psy755 81 IDSSTV 86 (183)
Q Consensus 81 id~s~~ 86 (183)
|++...
T Consensus 348 i~nAg~ 353 (520)
T PRK06484 348 VNNAGI 353 (520)
T ss_pred EECCCC
Confidence 766543
No 452
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=89.73 E-value=1.3 Score=32.09 Aligned_cols=72 Identities=21% Similarity=0.320 Sum_probs=42.9
Q ss_pred HHHHHHhCCCcEEEEcCCchhHHHHHH----cCCccc---CCHH--HHhccCCEEEEecC----ChHHHHHHhcCCcccc
Q psy755 5 MARNLLKNGHDVIVYDKNTDASQTLAK----EGANMA---LSLS--TLASGAEFIISMLP----ASQDVLDAYDGSDGIL 71 (183)
Q Consensus 5 iA~~l~~~g~~V~~~~~~~~~~~~~~~----~g~~~~---~~~~--~~~~~adiVi~~vp----~~~~~~~v~~~~~~l~ 71 (183)
++..|++.|++|+++|.|+..++.+.+ .++... .+.. ..-...|+|+.... +......++ +.+.
T Consensus 44 ~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~~~~~~~~~~~~~~~l---~~~~ 120 (195)
T TIGR00477 44 NSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDFIFSTVVFMFLQAGRVPEII---ANMQ 120 (195)
T ss_pred HHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCEEEEecccccCCHHHHHHHH---HHHH
Confidence 456677889999999999987765432 232211 1111 11135788876532 123345555 6777
Q ss_pred ccCCCCcE
Q psy755 72 KHAKPGVI 79 (183)
Q Consensus 72 ~~l~~~~i 79 (183)
..|++|..
T Consensus 121 ~~LkpgG~ 128 (195)
T TIGR00477 121 AHTRPGGY 128 (195)
T ss_pred HHhCCCcE
Confidence 78888765
No 453
>PRK06197 short chain dehydrogenase; Provisional
Probab=89.70 E-value=0.99 Score=34.97 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=24.9
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTL 29 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~ 29 (183)
+|..+++.|++.|++|++.+|++++.+.+
T Consensus 28 IG~~~a~~l~~~G~~vi~~~r~~~~~~~~ 56 (306)
T PRK06197 28 LGYETAAALAAKGAHVVLAVRNLDKGKAA 56 (306)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 58999999999999999999998765543
No 454
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=89.62 E-value=2.3 Score=33.67 Aligned_cols=55 Identities=9% Similarity=0.001 Sum_probs=36.2
Q ss_pred cHHHHHHHHhCCC-------cEEEEcCCc--hhHHHHH----Hc------CCcccCCHHHHhccCCEEEEecCC
Q psy755 2 GSHMARNLLKNGH-------DVIVYDKNT--DASQTLA----KE------GANMALSLSTLASGAEFIISMLPA 56 (183)
Q Consensus 2 G~~iA~~l~~~g~-------~V~~~~~~~--~~~~~~~----~~------g~~~~~~~~~~~~~adiVi~~vp~ 56 (183)
|.++|..|...|. +++++|+++ ++++... .. +.....+..+.+++||+||++--.
T Consensus 16 G~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvVVitAG~ 89 (323)
T TIGR01759 16 GYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAALLVGAF 89 (323)
T ss_pred HHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEEEEeCCC
Confidence 7788888887775 799999965 3232211 11 122334566778999999998744
No 455
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.62 E-value=1.7 Score=33.15 Aligned_cols=23 Identities=9% Similarity=0.118 Sum_probs=20.2
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNT 23 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~ 23 (183)
+|.++|+.|++.|++|++..|+.
T Consensus 24 IG~aia~~la~~G~~V~l~~r~~ 46 (272)
T PRK08159 24 IAWGIAKACRAAGAELAFTYQGD 46 (272)
T ss_pred HHHHHHHHHHHCCCEEEEEcCch
Confidence 58999999999999998887764
No 456
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=89.62 E-value=1.4 Score=32.65 Aligned_cols=29 Identities=31% Similarity=0.442 Sum_probs=24.3
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTL 29 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~ 29 (183)
+|..+++.|.+.|++|++.+|++++.+..
T Consensus 18 iG~~l~~~l~~~g~~V~~~~r~~~~~~~~ 46 (251)
T PRK12826 18 IGRAIAVRLAADGAEVIVVDICGDDAAAT 46 (251)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 48899999999999999999997665443
No 457
>PRK07832 short chain dehydrogenase; Provisional
Probab=89.61 E-value=2.2 Score=32.39 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=24.9
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTL 29 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~ 29 (183)
+|..+++.|++.|++|++++|+++..+.+
T Consensus 12 iG~~la~~la~~G~~vv~~~r~~~~~~~~ 40 (272)
T PRK07832 12 IGRATALRLAAQGAELFLTDRDADGLAQT 40 (272)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 58899999999999999999998766554
No 458
>PRK08251 short chain dehydrogenase; Provisional
Probab=89.52 E-value=1.3 Score=32.89 Aligned_cols=30 Identities=30% Similarity=0.547 Sum_probs=25.9
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 14 iG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 43 (248)
T PRK08251 14 LGAGMAREFAAKGRDLALCARRTDRLEELK 43 (248)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988766553
No 459
>PRK12743 oxidoreductase; Provisional
Probab=89.50 E-value=1.8 Score=32.52 Aligned_cols=75 Identities=16% Similarity=0.187 Sum_probs=41.0
Q ss_pred CcHHHHHHHHhCCCcEEEEc-CCchhHHHHHHcCCcccCCHHHHhccCCEEEEecCChHHHHHHhcCCccccccCCCCcE
Q psy755 1 MGSHMARNLLKNGHDVIVYD-KNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 79 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~adiVi~~vp~~~~~~~v~~~~~~l~~~l~~~~i 79 (183)
+|..+++.|++.|++|++.. ++.+..+.+.+. +...-...+++-.-+.++..++.++ +++...+.+=..
T Consensus 14 iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~Dl~~~~~~~~~~---~~~~~~~~~id~ 83 (256)
T PRK12743 14 IGKACALLLAQQGFDIGITWHSDEEGAKETAEE-------VRSHGVRAEIRQLDLSDLPEGAQAL---DKLIQRLGRIDV 83 (256)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHH-------HHhcCCceEEEEccCCCHHHHHHHH---HHHHHHcCCCCE
Confidence 58999999999999998764 555555444321 0000011223333344555555555 444444444455
Q ss_pred EEeccC
Q psy755 80 VIDSST 85 (183)
Q Consensus 80 iid~s~ 85 (183)
++++..
T Consensus 84 li~~ag 89 (256)
T PRK12743 84 LVNNAG 89 (256)
T ss_pred EEECCC
Confidence 665554
No 460
>PRK05717 oxidoreductase; Validated
Probab=89.48 E-value=1.7 Score=32.53 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=24.7
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTL 29 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~ 29 (183)
+|..+++.|++.|++|++.+|++++.+..
T Consensus 22 IG~~~a~~l~~~g~~v~~~~~~~~~~~~~ 50 (255)
T PRK05717 22 IGLGIAAWLIAEGWQVVLADLDRERGSKV 50 (255)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence 58999999999999999999988765544
No 461
>PRK08628 short chain dehydrogenase; Provisional
Probab=89.47 E-value=1.7 Score=32.55 Aligned_cols=26 Identities=12% Similarity=0.402 Sum_probs=23.2
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDAS 26 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~ 26 (183)
+|..+++.|++.|++|++.+|++++.
T Consensus 19 iG~~la~~l~~~G~~v~~~~r~~~~~ 44 (258)
T PRK08628 19 IGAAISLRLAEEGAIPVIFGRSAPDD 44 (258)
T ss_pred HHHHHHHHHHHcCCcEEEEcCChhhH
Confidence 58999999999999999999988765
No 462
>PRK06483 dihydromonapterin reductase; Provisional
Probab=89.38 E-value=1.9 Score=31.80 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=22.4
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchh
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDA 25 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~ 25 (183)
+|..+|+.|++.|++|++.+|+++.
T Consensus 14 IG~~ia~~l~~~G~~V~~~~r~~~~ 38 (236)
T PRK06483 14 IGLALAWHLLAQGQPVIVSYRTHYP 38 (236)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCchh
Confidence 5899999999999999999998764
No 463
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=89.38 E-value=2.1 Score=31.83 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=21.0
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNT 23 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~ 23 (183)
+|.++++.|++.|++|++.+|++
T Consensus 17 IG~~ia~~l~~~G~~vi~~~r~~ 39 (248)
T TIGR01832 17 LGQGIAVGLAEAGADIVGAGRSE 39 (248)
T ss_pred HHHHHHHHHHHCCCEEEEEcCch
Confidence 58999999999999999999876
No 464
>PRK06484 short chain dehydrogenase; Validated
Probab=89.33 E-value=1.5 Score=36.73 Aligned_cols=31 Identities=23% Similarity=0.485 Sum_probs=26.8
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAK 31 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~ 31 (183)
+|.++|+.|++.|++|++.+|++++.+.+.+
T Consensus 17 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (520)
T PRK06484 17 IGRAACQRFARAGDQVVVADRNVERARERAD 47 (520)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999887766543
No 465
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.33 E-value=2.2 Score=32.15 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.5
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNT 23 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~ 23 (183)
||.++|+.|++.|++|++.+|+.
T Consensus 21 IG~a~a~~la~~G~~v~l~~r~~ 43 (256)
T PRK07889 21 IAFHVARVAQEQGAEVVLTGFGR 43 (256)
T ss_pred HHHHHHHHHHHCCCEEEEecCcc
Confidence 58899999999999999988764
No 466
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.27 E-value=2.4 Score=31.95 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=20.1
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNT 23 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~ 23 (183)
||.++|+.|++.|++|++.+|+.
T Consensus 21 IG~aia~~la~~G~~v~~~~r~~ 43 (257)
T PRK08594 21 IAWGIARSLHNAGAKLVFTYAGE 43 (257)
T ss_pred HHHHHHHHHHHCCCEEEEecCcc
Confidence 68999999999999999887653
No 467
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=89.23 E-value=0.58 Score=37.21 Aligned_cols=79 Identities=14% Similarity=0.188 Sum_probs=45.3
Q ss_pred CcHHHHHHHHhCC-CcEEEE-cCCchhHHHHHHc-------CC-------cccCCHHHHhccCCEEEEecCChHHHHHHh
Q psy755 1 MGSHMARNLLKNG-HDVIVY-DKNTDASQTLAKE-------GA-------NMALSLSTLASGAEFIISMLPASQDVLDAY 64 (183)
Q Consensus 1 mG~~iA~~l~~~g-~~V~~~-~~~~~~~~~~~~~-------g~-------~~~~~~~~~~~~adiVi~~vp~~~~~~~v~ 64 (183)
||..+++.|.+++ +++... ++++..-+.+... +. ...+...+...++|+||+++|.....+-.
T Consensus 12 ~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a~p~~~s~~~~- 90 (341)
T TIGR00978 12 VGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSALPSEVAEEVE- 90 (341)
T ss_pred HHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEeCCHHHHHHHH-
Confidence 5888889888876 476655 5443322222110 00 01111223457899999999986543332
Q ss_pred cCCccccccCCCCcEEEeccCC
Q psy755 65 DGSDGILKHAKPGVIVIDSSTV 86 (183)
Q Consensus 65 ~~~~~l~~~l~~~~iiid~s~~ 86 (183)
+ .....|..+||.|+.
T Consensus 91 ---~---~~~~~G~~VIDlsg~ 106 (341)
T TIGR00978 91 ---P---KLAEAGKPVFSNASN 106 (341)
T ss_pred ---H---HHHHCCCEEEECChh
Confidence 2 223468889998876
No 468
>PLN02650 dihydroflavonol-4-reductase
Probab=89.15 E-value=0.85 Score=36.07 Aligned_cols=54 Identities=17% Similarity=0.232 Sum_probs=36.6
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHc----C-----------CcccCCHHHHhccCCEEEEec
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKE----G-----------ANMALSLSTLASGAEFIISML 54 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~----g-----------~~~~~~~~~~~~~adiVi~~v 54 (183)
+|+.+++.|++.|++|++.+|++++.+..... + +.......++++++|.||-+.
T Consensus 17 IGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~ViH~A 85 (351)
T PLN02650 17 IGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVFHVA 85 (351)
T ss_pred HHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEEEeC
Confidence 58999999999999999998887654432211 1 111123456677889888765
No 469
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=88.98 E-value=0.95 Score=33.61 Aligned_cols=26 Identities=19% Similarity=0.196 Sum_probs=22.2
Q ss_pred HHHHHhCCCcEEEEcCCchhHHHHHH
Q psy755 6 ARNLLKNGHDVIVYDKNTDASQTLAK 31 (183)
Q Consensus 6 A~~l~~~g~~V~~~~~~~~~~~~~~~ 31 (183)
+..|++.|++|+++|.|+..++++..
T Consensus 52 a~~LA~~G~~V~avD~s~~Ai~~~~~ 77 (218)
T PRK13255 52 MLWLAEQGHEVLGVELSELAVEQFFA 77 (218)
T ss_pred HHHHHhCCCeEEEEccCHHHHHHHHH
Confidence 45688999999999999999988643
No 470
>PRK05875 short chain dehydrogenase; Provisional
Probab=88.97 E-value=2.2 Score=32.32 Aligned_cols=29 Identities=24% Similarity=0.440 Sum_probs=24.8
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTL 29 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~ 29 (183)
+|..+++.|++.|++|++.+|++++.+..
T Consensus 19 IG~~la~~l~~~G~~V~~~~r~~~~~~~~ 47 (276)
T PRK05875 19 IGKGVAAGLVAAGAAVMIVGRNPDKLAAA 47 (276)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 58899999999999999999998765544
No 471
>PRK06841 short chain dehydrogenase; Provisional
Probab=88.97 E-value=2.3 Score=31.69 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=22.4
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchh
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDA 25 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~ 25 (183)
+|..+++.|++.|++|++.+|+++.
T Consensus 27 IG~~la~~l~~~G~~Vi~~~r~~~~ 51 (255)
T PRK06841 27 IGHAIAELFAAKGARVALLDRSEDV 51 (255)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 5889999999999999999998764
No 472
>PRK07831 short chain dehydrogenase; Provisional
Probab=88.93 E-value=2 Score=32.26 Aligned_cols=30 Identities=30% Similarity=0.402 Sum_probs=25.3
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
+|.++++.|++.|++|++.+|++++.+...
T Consensus 30 IG~~ia~~l~~~G~~V~~~~~~~~~~~~~~ 59 (262)
T PRK07831 30 IGSATARRALEEGARVVISDIHERRLGETA 59 (262)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999887765543
No 473
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=88.85 E-value=6.5 Score=27.80 Aligned_cols=61 Identities=11% Similarity=0.076 Sum_probs=33.6
Q ss_pred HHHHHHHhCCCcEEEEcCCchhHHHHHHcC--CcccCCHHHHhccCCEEEEecCCh-----HHHHHHh
Q psy755 4 HMARNLLKNGHDVIVYDKNTDASQTLAKEG--ANMALSLSTLASGAEFIISMLPAS-----QDVLDAY 64 (183)
Q Consensus 4 ~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~adiVi~~vp~~-----~~~~~v~ 64 (183)
.+...+.+.|+++..+|...-....+.... -.......+-+.+||.||+++|.- ..+|..+
T Consensus 21 ~~~~~l~~~~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~sP~Y~~sip~~LK~~i 88 (171)
T TIGR03567 21 HVREALQEQGVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVATPVYKASYSGVLKALL 88 (171)
T ss_pred HHHHHHHHCCCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEECCcccCCCCHHHHHHH
Confidence 445556667888777764332222222111 111223445567899999999842 3456555
No 474
>PLN00015 protochlorophyllide reductase
Probab=88.80 E-value=1.6 Score=34.00 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=25.8
Q ss_pred CcHHHHHHHHhCC-CcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNG-HDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g-~~V~~~~~~~~~~~~~~ 30 (183)
||.++++.|++.| ++|++.+|+.++.+.+.
T Consensus 9 IG~aia~~l~~~G~~~V~~~~r~~~~~~~~~ 39 (308)
T PLN00015 9 LGLATAKALAETGKWHVVMACRDFLKAERAA 39 (308)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence 6899999999999 99999999988766544
No 475
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.76 E-value=3.1 Score=31.10 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=19.1
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNT 23 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~ 23 (183)
+|.++++.|++.|++|++..++.
T Consensus 19 IG~~~a~~l~~~G~~v~~~~~~~ 41 (255)
T PRK06463 19 IGRAIAEAFLREGAKVAVLYNSA 41 (255)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCc
Confidence 58999999999999998865443
No 476
>PRK07576 short chain dehydrogenase; Provisional
Probab=88.76 E-value=1.8 Score=32.68 Aligned_cols=29 Identities=14% Similarity=0.303 Sum_probs=24.7
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTL 29 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~ 29 (183)
+|..+++.|++.|++|++.+|+++..+..
T Consensus 21 IG~~la~~l~~~G~~V~~~~r~~~~~~~~ 49 (264)
T PRK07576 21 INLGIAQAFARAGANVAVASRSQEKVDAA 49 (264)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 58899999999999999999998765544
No 477
>PRK06914 short chain dehydrogenase; Provisional
Probab=88.74 E-value=1.6 Score=33.13 Aligned_cols=30 Identities=27% Similarity=0.299 Sum_probs=25.8
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
+|..+++.|++.|++|++.+|+++..+...
T Consensus 15 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 44 (280)
T PRK06914 15 FGLLTTLELAKKGYLVIATMRNPEKQENLL 44 (280)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988766543
No 478
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=88.73 E-value=0.94 Score=34.04 Aligned_cols=56 Identities=16% Similarity=0.212 Sum_probs=37.8
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHc--CCc-----ccC---CHHHHh-ccCCEEEEecCC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKE--GAN-----MAL---SLSTLA-SGAEFIISMLPA 56 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~--g~~-----~~~---~~~~~~-~~adiVi~~vp~ 56 (183)
+|+.++..|.+.|++|++..|++++....... ++. ..+ +..+.+ ...|+||.+.+.
T Consensus 29 iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~g~ 95 (251)
T PLN00141 29 TGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICATGF 95 (251)
T ss_pred HHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEECCCC
Confidence 48899999999999999999998876544322 121 111 122344 579999988653
No 479
>PRK08226 short chain dehydrogenase; Provisional
Probab=88.66 E-value=2 Score=32.20 Aligned_cols=24 Identities=25% Similarity=0.582 Sum_probs=21.8
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCch
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTD 24 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~ 24 (183)
+|..+++.|++.|++|++.+|+++
T Consensus 18 iG~~la~~l~~~G~~Vv~~~r~~~ 41 (263)
T PRK08226 18 IGEGIARVFARHGANLILLDISPE 41 (263)
T ss_pred HHHHHHHHHHHCCCEEEEecCCHH
Confidence 588999999999999999999875
No 480
>PRK05884 short chain dehydrogenase; Provisional
Probab=88.62 E-value=0.55 Score=34.67 Aligned_cols=31 Identities=26% Similarity=0.455 Sum_probs=26.9
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAK 31 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~ 31 (183)
+|+++++.|++.|++|++.+|++++.+.+.+
T Consensus 12 iG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~ 42 (223)
T PRK05884 12 LGRTIAEGFRNDGHKVTLVGARRDDLEVAAK 42 (223)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999888766544
No 481
>PRK06101 short chain dehydrogenase; Provisional
Probab=88.60 E-value=0.54 Score=34.99 Aligned_cols=32 Identities=25% Similarity=0.448 Sum_probs=27.5
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKE 32 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~ 32 (183)
+|..+++.|++.|++|++.+|++++.+.+.+.
T Consensus 13 iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~ 44 (240)
T PRK06101 13 IGKQLALDYAKQGWQVIACGRNQSVLDELHTQ 44 (240)
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh
Confidence 58899999999999999999999887766543
No 482
>PRK07775 short chain dehydrogenase; Provisional
Probab=88.45 E-value=1.6 Score=33.21 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=24.2
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTL 29 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~ 29 (183)
+|..+++.|+++|++|++.+|++++.+.+
T Consensus 22 iG~~la~~L~~~G~~V~~~~r~~~~~~~~ 50 (274)
T PRK07775 22 IGAATAIELAAAGFPVALGARRVEKCEEL 50 (274)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 58899999999999999999887765543
No 483
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=88.43 E-value=0.43 Score=35.23 Aligned_cols=57 Identities=19% Similarity=0.256 Sum_probs=34.4
Q ss_pred cHHHHHHH--HhCCCcEEE-EcCCchhHHHHHHcC--CcccCCHHHHhc--cCCEEEEecCChHH
Q psy755 2 GSHMARNL--LKNGHDVIV-YDKNTDASQTLAKEG--ANMALSLSTLAS--GAEFIISMLPASQD 59 (183)
Q Consensus 2 G~~iA~~l--~~~g~~V~~-~~~~~~~~~~~~~~g--~~~~~~~~~~~~--~adiVi~~vp~~~~ 59 (183)
|..++..+ ...|+++++ +|+++++..... .+ +...+++.+.++ +.|.|++|+|....
T Consensus 96 G~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i-~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~ 159 (213)
T PRK05472 96 GRALLNYNGFEKRGFKIVAAFDVDPEKIGTKI-GGIPVYHIDELEEVVKENDIEIGILTVPAEAA 159 (213)
T ss_pred HHHHHHhhhcccCCcEEEEEEECChhhcCCEe-CCeEEcCHHHHHHHHHHCCCCEEEEeCCchhH
Confidence 55565542 345788775 688876543222 12 222345666665 49999999998543
No 484
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=88.38 E-value=13 Score=31.09 Aligned_cols=84 Identities=10% Similarity=-0.009 Sum_probs=49.9
Q ss_pred cCCEEEEecCC-----hHHHHHHhcCCccccccCCCCcEEEeccCC--CchhHHHHHHHHHhcCCcEEeecccCCHHHHh
Q psy755 46 GAEFIISMLPA-----SQDVLDAYDGSDGILKHAKPGVIVIDSSTV--DPQVPQTLSNLAREKQITFLDAPVSGGTKAAQ 118 (183)
Q Consensus 46 ~adiVi~~vp~-----~~~~~~v~~~~~~l~~~l~~~~iiid~s~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 118 (183)
++|.|++..|. ...+...+ +.+...-.+|+.+.-.+|. .......+.+.+...|+..+.
T Consensus 304 ~ad~vilGspT~~~~~~p~~~~fl---~~l~~~~l~gK~~~vFGSygw~g~a~~~~~~~l~~~g~~~~~----------- 369 (479)
T PRK05452 304 RSKGVLVGSSTMNNVMMPKIAGLL---EEITGLRFRNKRASAFGSHGWSGGAVDRLSTRLQDAGFEMSL----------- 369 (479)
T ss_pred hCCEEEEECCccCCcchHHHHHHH---HHhhccCcCCCEEEEEECCCcCcHHHHHHHHHHHHCCCEEec-----------
Confidence 69999999986 23345555 4554443467766544443 234556677777777877642
Q ss_pred cCceEEEecCCHHHHHHHHHHHHHhcC
Q psy755 119 EATLTFMVGGDKSSLEKAKPILKCMGR 145 (183)
Q Consensus 119 ~~~~~~~~~g~~~~~~~~~~l~~~~g~ 145 (183)
...+-...+++..++++++-+.+..
T Consensus 370 --~l~~~~~P~ee~~~~~~~~g~~la~ 394 (479)
T PRK05452 370 --SLKAKWRPDQDALELCREHGREIAR 394 (479)
T ss_pred --cEEEEecCCHHHHHHHHHHHHHHHH
Confidence 1222223455666777776666653
No 485
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.37 E-value=1.8 Score=32.16 Aligned_cols=29 Identities=28% Similarity=0.533 Sum_probs=23.2
Q ss_pred CcHHHHHHHHhCCCcEEE-EcCCchhHHHH
Q psy755 1 MGSHMARNLLKNGHDVIV-YDKNTDASQTL 29 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~-~~~~~~~~~~~ 29 (183)
+|..+++.|.++|++|++ .+|++++.+.+
T Consensus 16 iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~ 45 (250)
T PRK08063 16 IGKAIALRLAEEGYDIAVNYARSRKAAEET 45 (250)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCHHHHHHH
Confidence 588999999999999876 57887765543
No 486
>PRK15076 alpha-galactosidase; Provisional
Probab=88.34 E-value=0.66 Score=38.15 Aligned_cols=45 Identities=11% Similarity=0.248 Sum_probs=33.3
Q ss_pred CCcEEEEcCCchhHHHHHH--------cC----CcccCCHHHHhccCCEEEEecCCh
Q psy755 13 GHDVIVYDKNTDASQTLAK--------EG----ANMALSLSTLASGAEFIISMLPAS 57 (183)
Q Consensus 13 g~~V~~~~~~~~~~~~~~~--------~g----~~~~~~~~~~~~~adiVi~~vp~~ 57 (183)
+.+|+++|+++++.+...+ .+ +..+++..+++++||+||+++-.+
T Consensus 30 ~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ti~vg 86 (431)
T PRK15076 30 DAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVINAIQVG 86 (431)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeEeeeeC
Confidence 4589999999988764322 12 334567788899999999998664
No 487
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=88.33 E-value=2 Score=32.22 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=21.6
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCch
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTD 24 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~ 24 (183)
+|.++++.|++.|++|++.+|++.
T Consensus 20 IG~~la~~l~~~G~~v~~~~r~~~ 43 (260)
T PRK12823 20 IGRGVALRAAAEGARVVLVDRSEL 43 (260)
T ss_pred HHHHHHHHHHHCCCEEEEEeCchH
Confidence 589999999999999999999853
No 488
>PRK07069 short chain dehydrogenase; Validated
Probab=88.32 E-value=2.5 Score=31.34 Aligned_cols=29 Identities=24% Similarity=0.472 Sum_probs=23.9
Q ss_pred CcHHHHHHHHhCCCcEEEEcCC-chhHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKN-TDASQTL 29 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~-~~~~~~~ 29 (183)
+|..+++.|++.|++|++.+|+ ++..+.+
T Consensus 11 iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~ 40 (251)
T PRK07069 11 LGRAIARRMAEQGAKVFLTDINDAAGLDAF 40 (251)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCcchHHHHH
Confidence 5899999999999999999998 5554443
No 489
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=88.24 E-value=2 Score=32.26 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.7
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNT 23 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~ 23 (183)
+|.++|+.|++.|++|++.+|+.
T Consensus 20 IG~aia~~l~~~G~~vv~~~~~~ 42 (251)
T PRK12481 20 LGQGMAIGLAKAGADIVGVGVAE 42 (251)
T ss_pred HHHHHHHHHHHCCCEEEEecCch
Confidence 58999999999999999988864
No 490
>PRK06181 short chain dehydrogenase; Provisional
Probab=88.23 E-value=2 Score=32.23 Aligned_cols=29 Identities=21% Similarity=0.423 Sum_probs=24.6
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTL 29 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~ 29 (183)
+|..+++.|++.|++|++.+|++++.+.+
T Consensus 13 iG~~la~~l~~~g~~Vi~~~r~~~~~~~~ 41 (263)
T PRK06181 13 IGRALAVRLARAGAQLVLAARNETRLASL 41 (263)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 47889999999999999999998776554
No 491
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=88.17 E-value=5.3 Score=29.66 Aligned_cols=79 Identities=22% Similarity=0.302 Sum_probs=46.9
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHHHcCCcc-c----CCHHHH-----hccCCEEEEecCChHHHHHHhcCCccc
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANM-A----LSLSTL-----ASGAEFIISMLPASQDVLDAYDGSDGI 70 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~-~----~~~~~~-----~~~adiVi~~vp~~~~~~~v~~~~~~l 70 (183)
+|..+++.+...|.+|++.++++++.+.+.+.|... . .+..+. -...|+++.+++........
T Consensus 146 ~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~------- 218 (271)
T cd05188 146 VGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGPETLAQA------- 218 (271)
T ss_pred HHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCHHHHHHH-------
Confidence 356677777778999999999988877776554311 1 111111 14578888888653333333
Q ss_pred cccCCCCcEEEeccCC
Q psy755 71 LKHAKPGVIVIDSSTV 86 (183)
Q Consensus 71 ~~~l~~~~iiid~s~~ 86 (183)
...+.++..+++.+..
T Consensus 219 ~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 219 LRLLRPGGRIVVVGGT 234 (271)
T ss_pred HHhcccCCEEEEEccC
Confidence 3345555555555543
No 492
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=88.16 E-value=1.2 Score=34.72 Aligned_cols=55 Identities=15% Similarity=0.163 Sum_probs=36.4
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH---H-cC-----------CcccCCHHHHhccCCEEEEecC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA---K-EG-----------ANMALSLSTLASGAEFIISMLP 55 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~---~-~g-----------~~~~~~~~~~~~~adiVi~~vp 55 (183)
+|+.+++.|.+.|++|++.+|++++.+... . .+ +...++..++++..|+||-+..
T Consensus 17 IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih~A~ 86 (325)
T PLN02989 17 IASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFHTAS 86 (325)
T ss_pred HHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEEeCC
Confidence 589999999999999998888876433221 1 01 1112234556778899888763
No 493
>PLN02686 cinnamoyl-CoA reductase
Probab=88.09 E-value=0.84 Score=36.58 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=23.6
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTL 29 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~ 29 (183)
+|+.+++.|++.|++|++..|+.++.+.+
T Consensus 65 IG~~lv~~L~~~G~~V~~~~r~~~~~~~l 93 (367)
T PLN02686 65 LGLAIVDRLLRHGYSVRIAVDTQEDKEKL 93 (367)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 58999999999999999888876655443
No 494
>PRK08309 short chain dehydrogenase; Provisional
Probab=88.05 E-value=3.9 Score=29.27 Aligned_cols=30 Identities=17% Similarity=0.158 Sum_probs=24.7
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLA 30 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~~ 30 (183)
||..+++.|.+.|++|.+.+|++++.+.+.
T Consensus 11 ~gg~la~~L~~~G~~V~v~~R~~~~~~~l~ 40 (177)
T PRK08309 11 MLKRVSLWLCEKGFHVSVIARREVKLENVK 40 (177)
T ss_pred HHHHHHHHHHHCcCEEEEEECCHHHHHHHH
Confidence 466799999999999999999987766543
No 495
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=88.04 E-value=2.2 Score=31.52 Aligned_cols=29 Identities=34% Similarity=0.476 Sum_probs=23.2
Q ss_pred CcHHHHHHHHhCCCcEEE-EcCCchhHHHH
Q psy755 1 MGSHMARNLLKNGHDVIV-YDKNTDASQTL 29 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~-~~~~~~~~~~~ 29 (183)
+|..+++.|++.|++|++ +.|++++.+..
T Consensus 13 iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~ 42 (247)
T PRK09730 13 IGRATALLLAQEGYTVAVNYQQNLHAAQEV 42 (247)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCChHHHHHH
Confidence 588999999999999876 67887665543
No 496
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=87.99 E-value=1.6 Score=33.81 Aligned_cols=55 Identities=15% Similarity=0.160 Sum_probs=36.2
Q ss_pred CcHHHHHHHHhCCCcEEEEcCCchhHHHH---HHc-----C-------CcccCCHHHHhccCCEEEEecC
Q psy755 1 MGSHMARNLLKNGHDVIVYDKNTDASQTL---AKE-----G-------ANMALSLSTLASGAEFIISMLP 55 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~~~~~~~~~~~---~~~-----g-------~~~~~~~~~~~~~adiVi~~vp 55 (183)
+|+.+++.|.+.|++|++.+|++...... ... . +.......++++++|+||-+..
T Consensus 16 IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A~ 85 (322)
T PLN02662 16 IASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFHTAS 85 (322)
T ss_pred HHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEEeCC
Confidence 58899999999999999988876543221 111 1 1111234566778998888763
No 497
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=87.91 E-value=6.3 Score=30.81 Aligned_cols=99 Identities=16% Similarity=0.201 Sum_probs=64.9
Q ss_pred HHHHHHhCCC-cEEEEcCCchhHHHHHHc----CCc------ccCCHHHHh-ccCCEEEEecCChHHHHHHhcCCccccc
Q psy755 5 MARNLLKNGH-DVIVYDKNTDASQTLAKE----GAN------MALSLSTLA-SGAEFIISMLPASQDVLDAYDGSDGILK 72 (183)
Q Consensus 5 iA~~l~~~g~-~V~~~~~~~~~~~~~~~~----g~~------~~~~~~~~~-~~adiVi~~vp~~~~~~~v~~~~~~l~~ 72 (183)
++...++.|. +|+++|.+|-.++.+.+. ++. ......... ...|+|+--+ -...+..+. +.+..
T Consensus 176 LaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI-LA~vl~~La---~~~~~ 251 (300)
T COG2264 176 LAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI-LAEVLVELA---PDIKR 251 (300)
T ss_pred HHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh-hHHHHHHHH---HHHHH
Confidence 3444567777 599999999887766542 333 111222223 3799999988 335566665 88888
Q ss_pred cCCCCcEEEeccCCCchhHHHHHHHHHhcCCcEEee
Q psy755 73 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDA 108 (183)
Q Consensus 73 ~l~~~~iiid~s~~~~~~~~~~~~~~~~~g~~~~~~ 108 (183)
.+++|..+|-++ ........+.+.+...|+..+.+
T Consensus 252 ~lkpgg~lIlSG-Il~~q~~~V~~a~~~~gf~v~~~ 286 (300)
T COG2264 252 LLKPGGRLILSG-ILEDQAESVAEAYEQAGFEVVEV 286 (300)
T ss_pred HcCCCceEEEEe-ehHhHHHHHHHHHHhCCCeEeEE
Confidence 999988877544 44444667777777777766653
No 498
>PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases. ; PDB: 3D1L_A 2I76_A 3DFU_A.
Probab=87.84 E-value=5.2 Score=27.21 Aligned_cols=56 Identities=20% Similarity=0.232 Sum_probs=35.8
Q ss_pred EEEecCCHHHHHHHHHHHHHhcCCeEEeCCcchHHH--HHHHHHHHHHHHHHHHHHHH
Q psy755 123 TFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQV--AKLCNNMLLGVTMMGVAEAM 178 (183)
Q Consensus 123 ~~~~~g~~~~~~~~~~l~~~~g~~~~~~g~~g~a~~--~k~~~~~~~~~~~~~~~E~~ 178 (183)
.+.+.|+++..+.++++++.+|.+++.+.+.....+ .-.+-+.+....+....|.+
T Consensus 3 ~~~iEgd~~~~~~l~~l~~~lg~~~~~i~~~~r~~yHaAav~asNf~~~L~~~a~~ll 60 (132)
T PF10728_consen 3 PFAIEGDEEALEVLQELAKELGGRPFEIDSEQRALYHAAAVFASNFLVALYALAAELL 60 (132)
T ss_dssp -EEEEESHHHHHHHHHHHHHTTSEEEE--GGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCHHHHHHHHHHHHHhCCceEEeCHHhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 455667999999999999999999999887555544 44433344444444444443
No 499
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=87.81 E-value=2.8 Score=31.10 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=22.1
Q ss_pred CcHHHHHHHHhCCCcEEEE-cCCchhHHHH
Q psy755 1 MGSHMARNLLKNGHDVIVY-DKNTDASQTL 29 (183)
Q Consensus 1 mG~~iA~~l~~~g~~V~~~-~~~~~~~~~~ 29 (183)
+|..+++.|++.|++|++. .|++++.+..
T Consensus 14 iG~~la~~l~~~g~~v~~~~~~~~~~~~~~ 43 (248)
T PRK06947 14 IGRATAVLAAARGWSVGINYARDAAAAEET 43 (248)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHHHHHHH
Confidence 5889999999999998764 5666654443
No 500
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=87.77 E-value=1.6 Score=35.94 Aligned_cols=101 Identities=13% Similarity=0.136 Sum_probs=57.6
Q ss_pred HHHHHHHHhCCCcEEEEcCCchh--HHHHHHcCCccc--CCHHHHhccCCEEEEec--CCh-HHHHHHhc------CCcc
Q psy755 3 SHMARNLLKNGHDVIVYDKNTDA--SQTLAKEGANMA--LSLSTLASGAEFIISML--PAS-QDVLDAYD------GSDG 69 (183)
Q Consensus 3 ~~iA~~l~~~g~~V~~~~~~~~~--~~~~~~~g~~~~--~~~~~~~~~adiVi~~v--p~~-~~~~~v~~------~~~~ 69 (183)
.++|+.|.+.|++|+++|.++.. .+.+.+.|+... .+......++|+||..- |+. ..+..... +.-+
T Consensus 13 ~~la~~l~~~G~~V~~~D~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~SpgI~~~~~~~~~a~~~~i~v~~~~e 92 (448)
T TIGR01081 13 GGLAMIAKQLGHEVTGSDANVYPPMSTQLEAQGIEIIEGFDAAQLEPKPDLVVIGNAMKRGNPCVEAVLNLNLPYTSGPQ 92 (448)
T ss_pred HHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEeCCCCHHHCCCCCCEEEECCCCCCCCHHHHHHHHCCCCEEeHHH
Confidence 47899999999999999976532 234555576543 23444445799888754 222 22222210 0011
Q ss_pred cc-ccCCCCc--EEEeccCCCchhHHHHHHHHHhcCC
Q psy755 70 IL-KHAKPGV--IVIDSSTVDPQVPQTLSNLAREKQI 103 (183)
Q Consensus 70 l~-~~l~~~~--iiid~s~~~~~~~~~~~~~~~~~g~ 103 (183)
+. ..+.+.+ +-|-.|+++..+..-+...+...|.
T Consensus 93 ~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~ 129 (448)
T TIGR01081 93 WLHDFVLHDRWVLAVAGTHGKTTTASMLAWVLEQCGL 129 (448)
T ss_pred HHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCC
Confidence 22 2222333 3456666777777777777776553
Done!