RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy755
(183 letters)
>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics,
structural genomics consortium, SGC, oxidoreductase;
2.38A {Homo sapiens} PDB: 2i9p_A*
Length = 296
Score = 269 bits (691), Expect = 2e-92
Identities = 87/183 (47%), Positives = 124/183 (67%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDV 60
MG+ MA+NL+K+G+ +I+YD DA + G + S + +A A+ II+MLP S +
Sbjct: 11 MGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINA 70
Query: 61 LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEA 120
++AY G++GILK K G ++IDSST+DP V + L+ + F+DAPVSGG AA+
Sbjct: 71 IEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSG 130
Query: 121 TLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNL 180
LTFMVGG + A+ +L CMG N+V+CG G GQ AK+CNNMLL ++M+G AEAMNL
Sbjct: 131 NLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNL 190
Query: 181 GVK 183
G++
Sbjct: 191 GIR 193
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas
aeruginosa PA01, PSI-2, structural genomics; HET: PG4;
2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A*
3q3c_A*
Length = 302
Score = 267 bits (686), Expect = 2e-91
Identities = 94/183 (51%), Positives = 116/183 (63%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDV 60
MG+ MA NLLK G+ + V+D A L GA+ A S GA+ +ISMLPASQ V
Sbjct: 14 MGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHV 73
Query: 61 LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEA 120
Y DG+L H PG +V++ ST+ P + + ARE+ + LDAPVSGGT A
Sbjct: 74 EGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAG 133
Query: 121 TLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNL 180
TLTFMVGGD +LEKA+P+ + MGRNI H G G GQVAK+CNN LL V M+G AEAM L
Sbjct: 134 TLTFMVGGDAEALEKARPLFEAMGRNIFHAGPDGAGQVAKVCNNQLLAVLMIGTAEAMAL 193
Query: 181 GVK 183
GV
Sbjct: 194 GVA 196
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain
enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}
Length = 301
Score = 260 bits (666), Expect = 2e-88
Identities = 72/183 (39%), Positives = 106/183 (57%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDV 60
MG MA NLLK G V +D + +GA + +A+ ++ I + LP + V
Sbjct: 15 MGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIV 74
Query: 61 LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEA 120
+G G+L K G +++D S+V P ++ +A EK I ++DAPVSGGTK A+
Sbjct: 75 ETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDAPVSGGTKGAEAG 134
Query: 121 TLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNL 180
TLT MVG ++ EK +P+L +G++I H GD+G G K+ NN+LLG M +AEA+ L
Sbjct: 135 TLTIMVGASEAVFEKIQPVLSVIGKDIYHVGDTGAGDAVKIVNNLLLGCNMASLAEALVL 194
Query: 181 GVK 183
GVK
Sbjct: 195 GVK 197
>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG,
protein structure initiative, PSI, midwest center for
structural genomics; HET: MSE TLA; 1.65A {Salmonella
typhimurium} SCOP: a.100.1.1 c.2.1.6
Length = 299
Score = 249 bits (638), Expect = 4e-84
Identities = 70/183 (38%), Positives = 111/183 (60%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDV 60
MG M++NLLK G+ ++V D+N +A + GA A + +A + II+MLP S V
Sbjct: 16 MGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHV 75
Query: 61 LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEA 120
+ G +GI++ AKPG ++ID S++ P + +S+ + K + LDAPVSGG A +
Sbjct: 76 KEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDG 135
Query: 121 TLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNL 180
TL+ MVGGDK+ +K ++K M ++VH GD G G V KL N +++ + + ++EA+ L
Sbjct: 136 TLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALTL 195
Query: 181 GVK 183
K
Sbjct: 196 ATK 198
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding;
gamma-hydroxybutyrate dehydrogenase, succinic
semialdehyde R geobacter metallireducens; HET: NAP;
2.07A {Geobacter metallireducens}
Length = 287
Score = 245 bits (627), Expect = 1e-82
Identities = 62/183 (33%), Positives = 94/183 (51%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDV 60
MGS MA+NL+K G V +++++ + ++ LA GA A + + +ML
Sbjct: 12 MGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAA 71
Query: 61 LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEA 120
+ G G+L+ G +D STVDP Q + K FL+APVSG K A++
Sbjct: 72 EEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGSKKPAEDG 131
Query: 121 TLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNL 180
TL + GD++ ++A P + MG+ I+H GD G G KL NM++G M E + L
Sbjct: 132 TLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLAL 191
Query: 181 GVK 183
G K
Sbjct: 192 GEK 194
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein;
gamma-hydroxybutyrate dehydrogenase, succinic
semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A
{Geobacter sulfurreducens}
Length = 287
Score = 241 bits (618), Expect = 2e-81
Identities = 60/183 (32%), Positives = 90/183 (49%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDV 60
MG MA NL++ G DV V+++N L GA A S + + + + I+ML
Sbjct: 12 MGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAA 71
Query: 61 LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEA 120
+ G++G+L+ G ID STVD + + + FL+APVSG K A++
Sbjct: 72 REVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGTKKPAEDG 131
Query: 121 TLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNL 180
TL + GD+S A P +G+ +H G+ G G KL NM++G M + E M L
Sbjct: 132 TLIILAAGDQSLFTDAGPAFAALGKKCLHLGEVGQGARMKLVVNMIMGQMMTALGEGMAL 191
Query: 181 GVK 183
G
Sbjct: 192 GRN 194
>3qha_A Putative oxidoreductase; seattle structural genomics center for
infectious disease, S mycobacterium avium 104, rossmann
fold; 2.25A {Mycobacterium avium}
Length = 296
Score = 242 bits (619), Expect = 3e-81
Identities = 59/183 (32%), Positives = 87/183 (47%), Gaps = 4/183 (2%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDV 60
MG+ MA + + V VYD +A LA+ GA +A S++ +A+ I++L + V
Sbjct: 26 MGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAAADLIHITVLDDA-QV 84
Query: 61 LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEA 120
+ + HAKPG ++ ST+ L+ + + I +DAPVSGG AA
Sbjct: 85 REVVGE---LAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSGGAAAAARG 141
Query: 121 TLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNL 180
L MVG D+ E+ KP K ++H G+ G G KL NML + EAM L
Sbjct: 142 ELATMVGADREVYERIKPAFKHWAAVVIHAGEPGAGTRMKLARNMLTFTSYAAACEAMKL 201
Query: 181 GVK 183
Sbjct: 202 AEA 204
>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A
{Homo sapiens}
Length = 316
Score = 238 bits (609), Expect = 1e-79
Identities = 51/183 (27%), Positives = 84/183 (45%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDV 60
MGS + NLLK GH V V+++ + +EGA + + + + S + + + +
Sbjct: 41 MGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAA 100
Query: 61 LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEA 120
D G G+L+ +PG +D STVD L+ + + FL+APVSG + + +
Sbjct: 101 KDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDG 160
Query: 121 TLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNL 180
L + GD+ E + MG+ G+ GN L NM+ G M +AE + L
Sbjct: 161 MLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTL 220
Query: 181 GVK 183
Sbjct: 221 AQV 223
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism,
tartaric acid, target 11128H, NYSGXRC, PSI-2, structural
genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Length = 303
Score = 235 bits (603), Expect = 8e-79
Identities = 56/185 (30%), Positives = 85/185 (45%), Gaps = 2/185 (1%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGA-NMALSLSTLASGAEFIISMLPASQD 59
MG AR+ L+ G D N A L EGA A S A + ++ ++ +
Sbjct: 18 MGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQ 77
Query: 60 VLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQE 119
V G DG+ KPG V+ SST+ Q ++ + LDAPVSGG A +
Sbjct: 78 VRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLDAPVSGGAVKAAQ 137
Query: 120 ATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDS-GNGQVAKLCNNMLLGVTMMGVAEAM 178
+T M G +++ + KP+L + N+ D+ G G K+ + +L GV + AEAM
Sbjct: 138 GEMTVMASGSEAAFTRLKPVLDAVASNVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAM 197
Query: 179 NLGVK 183
L +
Sbjct: 198 ALAAR 202
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate
dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A
{Arabidopsis thaliana}
Length = 310
Score = 235 bits (601), Expect = 2e-78
Identities = 56/183 (30%), Positives = 88/183 (48%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDV 60
MG M+ NLLKNG V V+++ L + GA++ S + + ++ I+ML
Sbjct: 32 MGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAA 91
Query: 61 LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEA 120
L G+L+ G ID STVD + ++ K F++ PVSG K A++
Sbjct: 92 LSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVSGSKKPAEDG 151
Query: 121 TLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNL 180
L + GDK+ E++ P +G+ + G GNG KL NM++G M +E + L
Sbjct: 152 QLIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSMMNAFSEGLVL 211
Query: 181 GVK 183
K
Sbjct: 212 ADK 214
>1yb4_A Tartronic semialdehyde reductase; structural genomics,
oxidoreductase, salmonella typhimurium LT2, PSI, protein
ST initiative; 2.40A {Salmonella typhimurium}
Length = 295
Score = 232 bits (595), Expect = 1e-77
Identities = 58/183 (31%), Positives = 93/183 (50%), Gaps = 1/183 (0%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDV 60
MGS MA NL + GH + V + L GA + + A+ I M+P + V
Sbjct: 14 MGSPMAINLARAGHQLHVTTI-GPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQV 72
Query: 61 LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEA 120
D G G K + G ++D S++ P + + E +LDAPVSGG A+E
Sbjct: 73 EDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEMGADYLDAPVSGGEIGAREG 132
Query: 121 TLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNL 180
TL+ MVGG++ ++ KP+ +G+NI G +G+GQ K+ N +++ + + V+EA+
Sbjct: 133 TLSIMVGGEQKVFDRVKPLFDILGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALVF 192
Query: 181 GVK 183
K
Sbjct: 193 ASK 195
>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine
catabolism, NADP+, structural GEN riken structural
genomics/proteomics initiative; HET: NDP; 1.80A {Thermus
thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*
Length = 289
Score = 226 bits (579), Expect = 2e-75
Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 6/183 (3%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDV 60
MG MA +L + ++ A + + G+ + A I + LP +++V
Sbjct: 12 MGYPMAGHLARRFPTLVWNRTFEKALRHQEEFGS--EAVPLERVAEARVIFTCLPTTREV 69
Query: 61 LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEA 120
+ + + + + G +D+++ +P+ + L+ REK +T+LDAPVSGGT A+
Sbjct: 70 YEVAEA---LYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAG 126
Query: 121 TLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNL 180
TLT M+GG + ++E+ +P L + +VH G G G K NN LL V + E +
Sbjct: 127 TLTVMLGGPEEAVERVRPFL-AYAKKVVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLA 185
Query: 181 GVK 183
VK
Sbjct: 186 LVK 188
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas
SP}
Length = 320
Score = 219 bits (561), Expect = 3e-72
Identities = 62/183 (33%), Positives = 96/183 (52%), Gaps = 2/183 (1%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDV 60
MG MAR L + G+ + V+++ + +LA GA + A A+ ++SML V
Sbjct: 42 MGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVV 101
Query: 61 LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEA 120
D G+ KPG + +D +++ P+ + + I LD PVSGGT A++
Sbjct: 102 QDVLFA-QGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLDTPVSGGTVGAEQG 160
Query: 121 TLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNL 180
TL M GG + E++ P+LK GR H G G+GQ+ KL N M++G+T+ VAEA+
Sbjct: 161 TLVIMAGGKPADFERSLPLLKVFGR-ATHVGPHGSGQLTKLANQMIVGITIGAVAEALLF 219
Query: 181 GVK 183
K
Sbjct: 220 ATK 222
>3l6d_A Putative oxidoreductase; structural genomics, protein structure
initiative, oxidoredu PSI-2; HET: MSE; 1.90A
{Pseudomonas putida}
Length = 306
Score = 183 bits (467), Expect = 3e-58
Identities = 32/183 (17%), Positives = 69/183 (37%), Gaps = 3/183 (1%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDV 60
MG+ MA+ LLK G V +++++ + L GA++ S+ S + I +L +
Sbjct: 20 MGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHAT 79
Query: 61 LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEA 120
+ G G+ A ++D +T L L + ++ + +
Sbjct: 80 HEVL-GMPGVA-RALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAYPRNVGHR 137
Query: 121 TLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNL 180
+ GD+ + E+ + +L+ + + V + M+ EA+
Sbjct: 138 ESHSIHTGDREAFEQHRALLEGLAGHTVFLPW-DEALAFATVLHAHAFAAMVTFFEAVGA 196
Query: 181 GVK 183
G +
Sbjct: 197 GDR 199
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural
genomics, PSI-biology, midwest center for structu
genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Length = 312
Score = 152 bits (386), Expect = 4e-46
Identities = 34/189 (17%), Positives = 65/189 (34%), Gaps = 13/189 (6%)
Query: 1 MGSHMARNLLKNGH-DVIVYDKNTDAS--QTLAKEGANMALSLSTLASGAEFIISMLPAS 57
S +A L + G D+ YD + S + G + S++ +A + I S++ A
Sbjct: 35 AASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGECDVIFSLVTAQ 94
Query: 58 QDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQI--TFLDAPVSGGTK 115
+ A H G + D ++ P V + + ++ + + V K
Sbjct: 95 AALEVA----QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVAVMSAVK 150
Query: 116 AAQEATLTFMVGGDKSSLEKAKPILKCMGRNI-VHCGDSGNGQVAKLCNNMLLGVTMMGV 174
+ G + + G I V G+ G + K+C + +L
Sbjct: 151 PHGHRVPLVVDGDGA---RRFQAAFTLYGCRIEVLDGEVGGAALLKMCRSAVLKGLEALF 207
Query: 175 AEAMNLGVK 183
EA+ K
Sbjct: 208 LEALAAAEK 216
>4ezb_A Uncharacterized conserved protein; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; 2.10A {Sinorhizobium meliloti}
Length = 317
Score = 143 bits (363), Expect = 1e-42
Identities = 27/191 (14%), Positives = 61/191 (31%), Gaps = 15/191 (7%)
Query: 1 MGSHMARNLLKNG-HDVIVYDKNT------DASQTLAKEGANMALSLSTLASGAEFIISM 53
+A L + YD A + A E L + A+ ++S+
Sbjct: 35 AAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGVEPLDDVAGIACADVVLSL 94
Query: 54 LPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGG 113
+ + + H + ID ++V P + + +F++ V
Sbjct: 95 VVGAATK----AVAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMAR 150
Query: 114 TKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDS-GNGQVAKLCNNMLLGVTMM 172
E + G + L +G N+ G++ G K+ ++++
Sbjct: 151 VPPYAEKVPILVAGRRA---VEVAERLNALGMNLEAVGETPGQASSLKMIRSVMIKGVEA 207
Query: 173 GVAEAMNLGVK 183
+ EA++ +
Sbjct: 208 LLIEALSSAER 218
>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain,
protein NADP complex, structural genomics, PSI; HET:
NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
a.100.1.8 c.2.1.6
Length = 264
Score = 127 bits (319), Expect = 1e-36
Identities = 28/184 (15%), Positives = 54/184 (29%), Gaps = 13/184 (7%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDV 60
+ +A L G +V+ + S + + +IS + +
Sbjct: 11 VAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVAL 70
Query: 61 LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEA 120
A I +D + + P+ + S+L + F+DA + G +
Sbjct: 71 GAARRAGRH------VRGIYVDINNISPETVRMASSLIEKGG--FVDAAIMGSVRRKGAD 122
Query: 121 TLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDS-GNGQVAKLCNNMLLGVTMMGVAEAMN 179
G D K L G NI G G+ K+ + + E +
Sbjct: 123 IRIIASGRDAEEFMK----LNRYGLNIEVRGREPGDASAIKMLRSSYTKGVSALLWETLT 178
Query: 180 LGVK 183
+
Sbjct: 179 AAHR 182
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.30A {Geobacter metallireducens}
Length = 358
Score = 83.9 bits (208), Expect = 1e-19
Identities = 57/213 (26%), Positives = 89/213 (41%), Gaps = 48/213 (22%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAE---FIISMLPAS 57
MG+ M R L K GH+ +VYD N +A Q L +EG A S+ + + M+PA+
Sbjct: 33 MGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAA 92
Query: 58 --QDVLDAYDGSDGILKHAKPGVIVID---SSTVDPQVPQTL--SNLAREKQITFLDAPV 110
+L + IVID S D + ++ R + IT++D
Sbjct: 93 VVDSMLQR------MTPLLAANDIVIDGGNSHYQD-----DIRRADQMRAQGITYVDVGT 141
Query: 111 SGGTKAAQEATLTFMVGGDKSSLEKAKPILK-----------CMGRNI---------VHC 150
SGG + M+GG+K ++E+ P+ + GR +HC
Sbjct: 142 SGGIFGLERGY-CLMIGGEKQAVERLDPVFRTLAPGIGAAPRTPGREKREGTAELGYLHC 200
Query: 151 GDSGNGQVAKLCNNMLLGV---TMMGVAEAMNL 180
G SG G K+ +N G+ M AE +N+
Sbjct: 201 GPSGAGHFVKMVHN---GIEYGLMAAYAEGLNI 230
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 77.0 bits (189), Expect = 1e-17
Identities = 29/202 (14%), Positives = 55/202 (27%), Gaps = 28/202 (13%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDV 60
MG+ + R + + H + + + L G A+ ++ LP
Sbjct: 23 MGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIP-LTDGDGWIDEADVVVLALP----D 77
Query: 61 LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPV---------- 110
++ I+ +PG IV+ P R F+ P
Sbjct: 78 NIIEKVAEDIVPRVRPGTIVLILDAAAPYAGVM---PERADITYFIGHPCHPPLFNDETD 134
Query: 111 ------SGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNN 164
G A Q M G + I + M + Q+A L
Sbjct: 135 PAARTDYHGGIAKQAIVCALM-QGPEEHYAIGADICETMWSPVTRTHRVTTEQLAILEPG 193
Query: 165 M---LLGVTMMGVAEAMNLGVK 183
+ + + + A++
Sbjct: 194 LSEMVAMPFVETMVHAVDECAD 215
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; 2.19A {Bacteroides fragilis}
Length = 266
Score = 69.8 bits (170), Expect = 5e-15
Identities = 31/187 (16%), Positives = 67/187 (35%), Gaps = 13/187 (6%)
Query: 1 MGSHMARNLLKNGHDVI-VYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLP--A 56
+ +++A+ L + G ++ VY + ++++ LA++ A L+ + A+ I L A
Sbjct: 21 LATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDSA 80
Query: 57 SQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKA 116
++L GI++ + +++ ++ P + + S +
Sbjct: 81 FAELL------QGIVEGKREEALMVHTAGSIPM--NVWEGHVPHYGVFYPMQTFSKQREV 132
Query: 117 AQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAE 176
+ F+ K I + N V+ DS + L T A
Sbjct: 133 DFKEIPFFIEASSTEDAAFLKAIASTLS-NRVYDADSEQRKSLHLAAVFTCNFTNHMYAL 191
Query: 177 AMNLGVK 183
A L K
Sbjct: 192 AAELLKK 198
>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase,
CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP:
a.100.1.1 c.2.1.6
Length = 478
Score = 67.3 bits (165), Expect = 9e-14
Identities = 31/152 (20%), Positives = 65/152 (42%), Gaps = 15/152 (9%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLA--SGAEF--------- 49
MG+++A N+ + G V V+++ S+ K A+ + + A + F
Sbjct: 12 MGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRK 71
Query: 50 IISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAP 109
+ ++ A D+ + + K + G I++D+ + + + FL
Sbjct: 72 ALILVQAGAAT-DST--IEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMG 128
Query: 110 VSGGTKAAQEATLTFMVGGDKSSLEKAKPILK 141
+SGG + A++ F GG S E+ +PI++
Sbjct: 129 ISGGEEGARKGP-AFFPGGTLSVWEEIRPIVE 159
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB:
2vq3_A*
Length = 215
Score = 61.9 bits (150), Expect = 3e-12
Identities = 25/166 (15%), Positives = 44/166 (26%), Gaps = 16/166 (9%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDV 60
+A L+ +G V+V +N + L A S E I +
Sbjct: 39 FARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQ-VTFQEEAVSSPEVIFVAVF----- 92
Query: 61 LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEA 120
+ Y + ++V S+ + + Q + A F V
Sbjct: 93 REHYSSLCSLSDQLAGKILVDVSNPTEQEHLQHRESNAEYLASLFPTCTVVKAFNVISAW 152
Query: 121 TL----------TFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNG 156
TL + G + + MG V G +
Sbjct: 153 TLQAGPRDGNRQVPICGDQPEAKRAVSEMALAMGFMPVDMGSLASA 198
>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6
Length = 276
Score = 61.0 bits (147), Expect = 9e-12
Identities = 21/185 (11%), Positives = 51/185 (27%), Gaps = 13/185 (7%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDV 60
+ L + ++ D ++ LA+ A +L + ++P
Sbjct: 13 LTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDRYIK 72
Query: 61 LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEA 120
A +++ S + + + I + S +
Sbjct: 73 TVAN-------HLNLGDAVLVHCSGF---LSSEIFKKSGRASIHPNFSFSSLEKALEMKD 122
Query: 121 TLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSG---NGQVAKLCNNMLLGVTMMGVAEA 177
+ F + GD+ L K I + + A + +N + + +
Sbjct: 123 QIVFGLEGDERGLPIVKKIAEEISGKYFVIPSEKKKAYHLAAVIASNFPVALAYLSKRIY 182
Query: 178 MNLGV 182
LG+
Sbjct: 183 TLLGL 187
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose
phosphate pathway, oxidoreductase, 6-phosphogl
dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB:
2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*
Length = 480
Score = 59.1 bits (144), Expect = 6e-11
Identities = 35/151 (23%), Positives = 60/151 (39%), Gaps = 17/151 (11%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMAL----SLSTLASGAE---FIISM 53
MG ++A N+ G+ V +++++ + ++ + E L ++ E I+ M
Sbjct: 26 MGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLM 85
Query: 54 LPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGG 113
+ A DA D + + G I+ID Q + + F+ VSGG
Sbjct: 86 VKAGAGT-DAA--IDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGG 142
Query: 114 TKAAQEATLT---FMVGGDKSSLEKAKPILK 141
+ A L M GG K + E PIL
Sbjct: 143 EEGA----LKGPSIMPGGQKEAYELVAPILT 169
>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt,
oxidoreductase, gluconate utilization; HET: ATR RES P33;
2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*
Length = 474
Score = 58.0 bits (141), Expect = 1e-10
Identities = 37/148 (25%), Positives = 60/148 (40%), Gaps = 11/148 (7%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMAL----SLSTLASGAE---FIISM 53
MG ++A N+ G+ V +Y++ T ++ + KE + L +L E I+ M
Sbjct: 16 MGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLM 75
Query: 54 LPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGG 113
+ A DA +L G I+ID + + I F+ VSGG
Sbjct: 76 VQAGAAT-DAT--IKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGG 132
Query: 114 TKAAQEATLTFMVGGDKSSLEKAKPILK 141
K A + M GG K + + PI +
Sbjct: 133 EKGALLGP-SMMPGGQKEAYDLVAPIFE 159
>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase
(CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1
c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*
Length = 482
Score = 54.9 bits (133), Expect = 2e-09
Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 12/149 (8%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTD-ASQTLAKEGANMAL----SLSTLASGAE---FIIS 52
MG ++ N+ +G V +++ LA E + SL + S + II
Sbjct: 13 MGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIIL 72
Query: 53 MLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSG 112
++ A Q V D + + ++ G I+ID + + ++K I F+ + VSG
Sbjct: 73 LVKAGQAV-DNF--IEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSG 129
Query: 113 GTKAAQEATLTFMVGGDKSSLEKAKPILK 141
G A+ + M GG+K + K I +
Sbjct: 130 GEDGARYGP-SLMPGGNKEAWPHIKAIFQ 157
>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold,
oxidoreductase; HET: FLC; 2.37A {Saccharomyces
cerevisiae}
Length = 497
Score = 53.8 bits (130), Expect = 4e-09
Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 12/149 (8%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTD-ASQTLAKEGANMAL----SLSTLASGAE---FIIS 52
MG ++ N +G V Y++ LA E ++ S+ S + ++
Sbjct: 21 MGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVML 80
Query: 53 MLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSG 112
++ A V DA + I+ + G I+ID ++K I F+ + VSG
Sbjct: 81 LVKAGAPV-DAL--INQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVSG 137
Query: 113 GTKAAQEATLTFMVGGDKSSLEKAKPILK 141
G + A+ + M GG + + K I +
Sbjct: 138 GEEGARYGP-SLMPGGSEEAWPHIKNIFQ 165
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 50.8 bits (121), Expect = 2e-08
Identities = 28/166 (16%), Positives = 51/166 (30%), Gaps = 19/166 (11%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDV 60
G + +L+ G+ V+ +N S L GA + + ++++ D
Sbjct: 30 FGKSLGLKMLQCGYSVVFGSRNPQVSSLLP-RGAEVLCYSEAASRSDVIVLAVHREHYDF 88
Query: 61 LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEA 120
L L + G ++ID S SN Q+ A V
Sbjct: 89 LAE-------LADSLKGRVLIDVSNNQKMNQYPESNAEYLAQL-VPGAHVVKAFNTISAW 140
Query: 121 TL----------TFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNG 156
L F+ G D + ++ I + +G + G
Sbjct: 141 ALQSGTLDASRQVFVCGNDSKAKDRVMDIARTLGLTPLDQGSLVAA 186
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP
oxidoreductase coenzyme F420-dependent, structural
genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum
WCFS1}
Length = 209
Score = 49.8 bits (118), Expect = 6e-08
Identities = 22/153 (14%), Positives = 45/153 (29%), Gaps = 7/153 (4%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDV 60
MG + N GH+V Y A+ + ++ +
Sbjct: 30 MGQAIGHNFEIAGHEVTYYGSKDQATT------LGEIVIMAVPYPALAALAKQYATQLKG 83
Query: 61 LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEA 120
D ++ + ++V S+ ++ Q L + K A + +
Sbjct: 84 KIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLPDSQVLKAFNTTFAATLQSGQVNGKE 143
Query: 121 TLTFMV-GGDKSSLEKAKPILKCMGRNIVHCGD 152
T +V G D S+ ++ L + G
Sbjct: 144 PTTVLVAGNDDSAKQRFTRALADSPLEVKDAGK 176
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A*
1e5q_A
Length = 450
Score = 45.7 bits (107), Expect = 3e-06
Identities = 22/174 (12%), Positives = 50/174 (28%), Gaps = 28/174 (16%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANM---------ALSLSTLASGAEFII 51
+ L +G V V + ++++ L+ + +L + + +I
Sbjct: 14 VTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVI 73
Query: 52 SMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFL----D 107
S++P + ++K A + +++ L A++ IT +
Sbjct: 74 SLIPYTFHA--------TVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITVMNEIGL 125
Query: 108 APVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKL 161
P A + GG + + S N K
Sbjct: 126 DPGIDHLYAIKTIEEVHAAGGKIKTFL-------SYCGGLPAPESSDNPLGYKF 172
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase,
oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
PDB: 3a63_A* 3abi_A*
Length = 365
Score = 44.2 bits (104), Expect = 7e-06
Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 17/113 (15%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMAL------SLSTLASGAEFIISML 54
+G +A +L DV + D N + + + + + + L + E +I L
Sbjct: 27 IGRAIAWDLKDE-FDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGAL 85
Query: 55 PASQDVLDAYDGSDGILKHA-KPGVIVIDSSTVDPQVPQTLSNLAREKQITFL 106
P +K A K V ++D S P+ P L + A + Q+T +
Sbjct: 86 PGFLGF--------KSIKAAIKSKVDMVDVSF-MPENPLELRDEAEKAQVTIV 129
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain
dehydrogenase/reductase, rossmann fold, BIO protein;
HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2
PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Length = 404
Score = 41.3 bits (97), Expect = 8e-05
Identities = 20/114 (17%), Positives = 34/114 (29%), Gaps = 27/114 (23%)
Query: 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQ--- 58
G A +L K ++V + D L + + L L +L A +
Sbjct: 24 GWATALHLSKKNYEVCIVDN-------LVRRLFDHQLGLESLTPIASIHDRISRWKALTG 76
Query: 59 --------DVLDAYDGSDGILKHAKPGVIV-------IDSSTVDPQVP-QTLSN 96
D+ D ++ K +P +V S +D T N
Sbjct: 77 KSIELYVGDICD-FEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHN 129
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 40.6 bits (94), Expect = 1e-04
Identities = 28/148 (18%), Positives = 51/148 (34%), Gaps = 23/148 (15%)
Query: 1 MGSHMARNLLKNG-HDVIVYDKNTDASQTLAKEGANMALS--------LSTLASGAEFII 51
+ + L N +V V + +Q LAK + A+S L + + + +I
Sbjct: 34 VAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVI 93
Query: 52 SMLPASQDVLDAYDGSDGILKHA-KPGVIVIDSSTVDPQVPQTLSNLAREKQITFL---- 106
S++P + ++K A + V+ SS + P + L + IT +
Sbjct: 94 SLIPYTFHP--------NVVKSAIRTKTDVVTSSYISPA-LRELEPEIVKAGITVMNEIG 144
Query: 107 DAPVSGGTKAAQEATLTFMVGGDKSSLE 134
P A + GG S
Sbjct: 145 LDPGIDHLYAVKTIDEVHRAGGKLKSFL 172
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 39.9 bits (94), Expect = 2e-04
Identities = 10/91 (10%), Positives = 30/91 (32%), Gaps = 23/91 (25%)
Query: 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVL 61
G ++ ++ +G+ I+ + + + E+ +S +D++
Sbjct: 15 GQYVVESIKNDGNTPIILTR----------------SIGNKAINDYEYRVSDY-TLEDLI 57
Query: 62 DAYDGSDGILKH--AKPGVIVIDSSTVDPQV 90
+ + D ++ H A G +
Sbjct: 58 NQLNDVDAVV-HLAATRGS---QGKISEFHD 84
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET:
NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*
Length = 311
Score = 39.4 bits (93), Expect = 2e-04
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 30/84 (35%)
Query: 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLST-----LASGAEFIISMLPA 56
GSH+ +LL G +V V D +L+T + G F
Sbjct: 13 GSHIVEDLLARGLEVAVLD------------------NLATGKRENVPKGVPFFR----- 49
Query: 57 SQDVLDAYDGSDGILKHAKPGVIV 80
D+ D +G + + +P +
Sbjct: 50 -VDLRDK-EGVERAFREFRPTHVS 71
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase,
proline biosynthesis, NAD(P protein, rossmann fold,
doain swapping; HET: NAP; 2.15A {Streptococcus
pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A
Length = 259
Score = 39.0 bits (92), Expect = 3e-04
Identities = 11/52 (21%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFII 51
M S + + L + H++I+ + + S+ +A++ A+S L + +I
Sbjct: 14 MASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVI 65
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 3e-04
Identities = 27/140 (19%), Positives = 57/140 (40%), Gaps = 29/140 (20%)
Query: 26 SQTLAKEGANMA-LSL---STLASGAEFIISMLPASQDVLD--AYDGSDGILKHAKPGVI 79
S+ L A A SL + LAS A+ ++S+ + +++ Y G ++ A P
Sbjct: 1749 SKGLIPADATFAGHSLGEYAALASLAD-VMSI----ESLVEVVFYRGM--TMQVAVPRDE 1801
Query: 80 VIDSST----VDP-QVPQTLSNLAREKQITFLDAPVSGGTKAAQEA------TLTFMVGG 128
+ S+ ++P +V + S ++ + ++ V T E ++ G
Sbjct: 1802 LGRSNYGMIAINPGRVAASFS----QEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAG 1857
Query: 129 DKSSLEKAKPILKCMG-RNI 147
D +L+ +L + + I
Sbjct: 1858 DLRALDTVTNVLNFIKLQKI 1877
Score = 31.9 bits (72), Expect = 0.13
Identities = 36/205 (17%), Positives = 61/205 (29%), Gaps = 71/205 (34%)
Query: 10 LKNGHD-VIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSD 68
L NG ++V + Q+L G N+ L + SG + S +P S+
Sbjct: 370 LVNGAKNLVV----SGPPQSL--YGLNLTLRKAKAPSGLD--QSRIPFSE---------- 411
Query: 69 GILKHAKPGVIV----ID----SSTVDPQVPQTLSNLAREKQITF----LDAPVSGGTKA 116
K + S + P +L + ++F + PV
Sbjct: 412 -----RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVK-NNVSFNAKDIQIPV------ 459
Query: 117 AQEATLTFMVGGD--KSSLEKAKPILKCMGRNIVH--------------CGDSGNGQVAK 160
T G D S ++ I+ C+ R V G G +
Sbjct: 460 --YDTFD---GSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGV 514
Query: 161 LCNNMLLGVTMMGV----AEAMNLG 181
L + G GV A +++
Sbjct: 515 LTHRNKDG---TGVRVIVAGTLDIN 536
Score = 29.2 bits (65), Expect = 1.0
Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 30/104 (28%)
Query: 5 MARNLLKNGHD--VIVYDKNTDASQTLAKEGANM-ALSLSTLASGAEFIISM-------- 53
+ N+ N D + VYD G+++ LS S + II +
Sbjct: 444 VKNNVSFNAKDIQIPVYDTFD---------GSDLRVLSGSISERIVDCIIRLPVKWETTT 494
Query: 54 -LPASQDVLDAYD--GSDGI---LKHAKPG--VIVIDSSTVDPQ 89
A+ +LD + G+ G+ K G V VI + T+D
Sbjct: 495 QFKATH-ILD-FGPGGASGLGVLTHRNKDGTGVRVIVAGTLDIN 536
Score = 28.5 bits (63), Expect = 1.7
Identities = 31/130 (23%), Positives = 45/130 (34%), Gaps = 46/130 (35%)
Query: 3 SHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLD 62
SH LL D+I D L K N++ + + +P V D
Sbjct: 429 SH----LLVPASDLINKD--------LVKN--NVSFNAKDIQ---------IP----VYD 461
Query: 63 AYDGSDGILKHAKPGVI--VIDSSTVDPQV--PQTLSNLAREKQIT-FLD-AP--VSG-G 113
+DGSD L+ + ++D P V T + T LD P SG G
Sbjct: 462 TFDGSD--LRVLSGSISERIVDCIIRLP-VKWETTTQF-----KATHILDFGPGGASGLG 513
Query: 114 --TKAAQEAT 121
T ++ T
Sbjct: 514 VLTHRNKDGT 523
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate
dehydrogenase (EC...; 1574749, chorismate mutase type
II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae}
SCOP: a.100.1.12 c.2.1.6
Length = 298
Score = 38.5 bits (90), Expect = 5e-04
Identities = 21/155 (13%), Positives = 51/155 (32%), Gaps = 28/155 (18%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLP--ASQ 58
+G AR L +G+ + + D+ +A+ + + A+ +I +P +
Sbjct: 33 LGGLFARYLRASGYPISILDRED---WAVAES----------ILANADVVIVSVPINLTL 79
Query: 59 DVLDAYDGSDGILKHAKPGVIVID-SSTVDPQVPQTLSNLAREKQITFLDA-PVSGGTKA 116
+ ++ + + +++ D +S + + L L P+ G A
Sbjct: 80 ETIER------LKPYLTENMLLADLTSVKREPLAKMLEVHTGA----VLGLHPMFGADIA 129
Query: 117 AQEA-TLTFMVGGDKSSLEKAKPILKCMGRNIVHC 150
+ + G E ++ G I
Sbjct: 130 SMAKQVVVRCDGRFPERYEWLLEQIQIWGAKIYQT 164
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, protein-nucleotide comple binding
protein; HET: NAD UDP; 2.00A {Bordetella
bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Length = 330
Score = 38.3 bits (90), Expect = 6e-04
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 2 GSHMARNLLKNGHDVIVYD 20
GS++ + L GH+++V D
Sbjct: 33 GSNLIEHWLPQGHEILVID 51
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA
crystallography structure, oxidoreductase; HET: OMT
NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Length = 279
Score = 38.3 bits (90), Expect = 6e-04
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 9/85 (10%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGA-NMALSLSTLASGAEFIISMLP--AS 57
+G+ +A +L + GH +I + + + + A +L A+ I P
Sbjct: 11 IGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPIQLI 70
Query: 58 QDVLDAYDGSDGILKHAKPGVIVID 82
L+ ++ H P IV D
Sbjct: 71 LPTLEK------LIPHLSPTAIVTD 89
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose
4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis}
PDB: 3icp_A* 3aw9_A*
Length = 312
Score = 37.9 bits (89), Expect = 8e-04
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 2 GSHMARNLLKNGHDVIVYD 20
GSH+ L++ G++V+V D
Sbjct: 13 GSHLVDKLVELGYEVVVVD 31
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose
metabolism, isomerase, NAD, spine; HET: NAD; 2.7A
{Bacillus anthracis}
Length = 330
Score = 37.8 bits (89), Expect = 0.001
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 2 GSHMARNLLKNGHDVIVYD 20
GSH + L+ G V+V D
Sbjct: 14 GSHAVKKLVDEGLSVVVVD 32
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.001
Identities = 30/201 (14%), Positives = 64/201 (31%), Gaps = 46/201 (22%)
Query: 4 HMARNLLKNGHDVIVYD---KNT-DASQT-LAKEGANMALSLSTLASGAEFIISMLPASQ 58
+ +++L D V + K+ D ++ L+KE + + SG + L + Q
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 59 ---------DVLDA-YDG-SDGILKHAK-PGVIVID-SSTVDP--QVPQTLS--NLAREK 101
+VL Y I + P ++ D Q + N++R +
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135
Query: 102 QITFLDAPVSGGTKAAQEA------TLTFMVGGDKSSLE----KAKPILKCMGRNI---- 147
L +A E + ++G K+ + + + M I
Sbjct: 136 PYLKL-------RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 148 ---VHCGDSGNGQVAKLCNNM 165
+ ++ + KL +
Sbjct: 189 LKNCNSPETVLEMLQKLLYQI 209
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 36.5 bits (84), Expect = 0.002
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 11/85 (12%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLA---SGAEFIISMLPAS 57
+G +AR G V V + +D +A+ G +S A + I+ +PA
Sbjct: 166 VGMSVARKFAALGAKVKVGARESDLLARIAEMGME-PFHISKAAQELRDVDVCINTIPAL 224
Query: 58 QDVLDAYDGSDGILKHAKPGVIVID 82
V+ A +L VID
Sbjct: 225 --VVTA-----NVLAEMPSHTFVID 242
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center
for structural genomics, J protein structure
initiative, PSI-2; HET: AMP; 1.50A {Thermotoga
maritima} PDB: 3l4b_A*
Length = 155
Score = 35.7 bits (83), Expect = 0.003
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKE 32
GS +A +GH V+V DKN A L E
Sbjct: 31 GSLIANLASSSGHSVVVVDKNEYAFHRLNSE 61
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins,
biosynthesis, EXO-glycal, rossman transferase; HET: UD1
NAD; 1.90A {Streptomyces chartreusis}
Length = 321
Score = 36.0 bits (84), Expect = 0.004
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 2 GSHMARNLLKNGHDVIVYDK-NTDASQTLA 30
G H+AR L+ +G +V V D
Sbjct: 20 GGHLARALVASGEEVTVLDDLRVPPMIPPE 49
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 36.1 bits (84), Expect = 0.004
Identities = 20/86 (23%), Positives = 26/86 (30%), Gaps = 19/86 (22%)
Query: 2 GSHMARNLLKNGHDVIV-------YDKNTDASQTLAKEGANMALSLSTLASGAEFIISML 54
GS++ LLK VI + N D +TL S FI +
Sbjct: 38 GSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQW---------SRFCFIEGDI 88
Query: 55 PASQDVLDAYDGSDGILKH--AKPGV 78
G D +L H A V
Sbjct: 89 RDLTTCEQVMKGVDHVL-HQAALGSV 113
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics,
protein structure initiative, NEW YORK SGX resear for
structural genomics; HET: NAD; 1.87A {Archaeoglobus
fulgidus}
Length = 313
Score = 35.6 bits (83), Expect = 0.005
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 31/95 (32%)
Query: 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLST-----LASGAEFIISMLPA 56
GSH+ L + ++++V D +LS+ + A + + L A
Sbjct: 14 GSHVVDKLSE-SNEIVVID------------------NLSSGNEEFVNEAARLVKADL-A 53
Query: 57 SQDVLDAYDGSDGILKH--AKPGVIVIDSSTVDPQ 89
+ D+ D G++ + H A P V +P
Sbjct: 54 ADDIKDYLKGAEEVW-HIAANPDV---RIGAENPD 84
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 35.3 bits (82), Expect = 0.006
Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 19/86 (22%)
Query: 2 GSHMARNLLKNGHDVIV-------YDKNTDASQTLAKEGANMALSLSTLASGAEFIISML 54
GS++ LLK V+ + +N D ++L E S +FI +
Sbjct: 40 GSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQW---------SNFKFIQGDI 90
Query: 55 PASQDVLDAYDGSDGILKH--AKPGV 78
D +A G D +L H A V
Sbjct: 91 RNLDDCNNACAGVDYVL-HQAALGSV 115
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin
C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana}
SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 35.4 bits (82), Expect = 0.006
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 2 GSHMARNLLKNGHDVIVYD 20
SH+AR L GH VI D
Sbjct: 42 ASHIARRLKHEGHYVIASD 60
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F
structural genomics, JCSG, protein structure
initiative; 2.60A {Corynebacterium glutamicum atcc
13032}
Length = 341
Score = 35.4 bits (82), Expect = 0.006
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 13/88 (14%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEG----ANMALSLSTLASGAEFIISMLP- 55
+G + R+L H V Y+++ +++ EG A++ +L A+ I+ +P
Sbjct: 19 IGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPM 78
Query: 56 -ASQDVLDAYDGSDGILKHAKPGVIVID 82
A +LDA + P D
Sbjct: 79 TAIDSLLDA-------VHTHAPNNGFTD 99
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 35.1 bits (80), Expect = 0.007
Identities = 31/184 (16%), Positives = 63/184 (34%), Gaps = 32/184 (17%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPA---- 56
+G MA L GH+V + ++ A+ A+ A A S + A
Sbjct: 30 VGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAA 89
Query: 57 -SQDVLDAYDGSD------GILKHAKPGVIVIDSSTVDPQVPQTLSNLARE--------- 100
++ V++A +G+ G I++D + L
Sbjct: 90 GAELVVNATEGASSIAALTAAGAENLAGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQI 149
Query: 101 ----------KQITFLDAPVSGGTKAAQEATLT-FMVGGDKSSLEKAKPILKCMG-RNIV 148
K + ++A + A + F+ G D ++ + +LK +G ++++
Sbjct: 150 QRTFPEAKVVKTLNTMNASLMVDPGRAAGGDHSVFVSGNDAAAKAEVATLLKSLGHQDVI 209
Query: 149 HCGD 152
GD
Sbjct: 210 DLGD 213
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 34.5 bits (80), Expect = 0.012
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 2 GSHMARNLLKNGHDVIVYD 20
GSH+A LL+ G V+ D
Sbjct: 34 GSHIAELLLERGDKVVGID 52
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain
dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A
{Salmonella typhi} SCOP: c.2.1.2
Length = 347
Score = 34.5 bits (80), Expect = 0.013
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 2 GSHMARNLLKNGHDVIVYDKNT 23
GS++A L G D+IV+D +
Sbjct: 14 GSNLASFALSQGIDLIVFDNLS 35
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid
dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter
salexigens}
Length = 267
Score = 34.2 bits (79), Expect = 0.013
Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 16/73 (21%)
Query: 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVL 61
GS + +L H+V + D + L + E + L +Q V
Sbjct: 15 GSAIRPHLGTLAHEVRLSDI----------------VDLGAAEAHEEIVACDLADAQAVH 58
Query: 62 DAYDGSDGILKHA 74
D DGI+
Sbjct: 59 DLVKDCDGIIHLG 71
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold,
structural genomics; HET: NAP F42; 1.65A {Archaeoglobus
fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Length = 212
Score = 34.1 bits (77), Expect = 0.015
Identities = 27/171 (15%), Positives = 50/171 (29%), Gaps = 20/171 (11%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLS------TLASGAEFIISML 54
+G +A L GH+++V + + ++ A E +A S A+ A I +
Sbjct: 12 LGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLT 71
Query: 55 PASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSN--LAREKQITFLDAPVSG 112
+ +D IL K V + + + S A V
Sbjct: 72 IPWEHAIDTARDLKNIL-REKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLESEKVVS 130
Query: 113 GTKAAQEATL----------TFMVGGDKSSLEKAKPILKCM-GRNIVHCGD 152
A + G D S + ++ + G + G
Sbjct: 131 ALHTIPAARFANLDEKFDWDVPVCGDDDESKKVVMSLISEIDGLRPLDAGP 181
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A
{Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*
Length = 397
Score = 34.2 bits (79), Expect = 0.016
Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 2 GSHMARNLLKN-GHDVIVYD 20
GSH R LL++ H V++ D
Sbjct: 15 GSHFVRALLRDTNHSVVIVD 34
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 32.7 bits (75), Expect = 0.025
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGAN 35
G + + L + GH+V+ D N + A +
Sbjct: 17 FGGSIVKELHRMGHEVLAVDINEEKVNAYASYATH 51
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann,
PSI, M structural genomics; 1.70A {Archaeoglobus
fulgidus}
Length = 141
Score = 32.6 bits (75), Expect = 0.028
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGAN 35
G + R L G V+ DK+ + + L EG +
Sbjct: 17 AGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFD 51
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain,
NAD, RCK domain, potassium transport, potassium
channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus
jannaschii} SCOP: c.2.1.9
Length = 140
Score = 32.5 bits (75), Expect = 0.035
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKE 32
G +A++L + GHD+++ D + D + + E
Sbjct: 16 GYTLAKSLSEKGHDIVLIDIDKDICKKASAE 46
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 33.0 bits (75), Expect = 0.047
Identities = 22/141 (15%), Positives = 47/141 (33%), Gaps = 14/141 (9%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTL-ASGAEFIISMLPASQD 59
+ S N N I++ +Q L + + + + I+ P S
Sbjct: 297 LVSRFVENACANKERAILFAYEESRAQ-LLRNAYSWGMDFEEMERQNLLKIVCAYPESAG 355
Query: 60 VLDAYDGSDGILKHAKPGVIVIDS------STVDPQVPQTLSNL---AREKQITFL---D 107
+ D + KP I IDS + Q + + A++++IT L
Sbjct: 356 LEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNT 415
Query: 108 APVSGGTKAAQEATLTFMVGG 128
+ G + ++ ++ +
Sbjct: 416 SDQFMGAHSITDSHISTITDT 436
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A
3adp_A* 3f3s_A*
Length = 319
Score = 32.7 bits (75), Expect = 0.055
Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 30/111 (27%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTL--------ASGAEFIIS 52
+G A G V +YD + N+ + +L + AE +S
Sbjct: 17 VGRSWAMLFASGGFRVKLYDIEPRQ---ITGALENIRKEMKSLQQSGSLKGSLSAEEQLS 73
Query: 53 MLPASQDVLDAYDGSDGI---------LKH---------AKPGVIVIDSST 85
++ + ++ +A +G I LK V+ + SS+
Sbjct: 74 LISSCTNLAEAVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVV-LSSSS 123
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A
{Archaeoglobus fulgidus}
Length = 236
Score = 32.4 bits (73), Expect = 0.055
Identities = 25/186 (13%), Positives = 53/186 (28%), Gaps = 23/186 (12%)
Query: 1 MGSHMARNLLKNGHDVI-VYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQD 59
+G +A L +NG ++ + D + + + L + +
Sbjct: 11 IGKFLAEWLERNGFEIAAILDVRGEHEKMVRGIDE-------FLQREMDVAVEAASQQA- 62
Query: 60 VLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAP-VSGGTKAAQ 118
D ++ ILK +++ + D + + R+ A GG A
Sbjct: 63 ---VKDYAEKILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGRRVYIASGAIGGLDAIF 119
Query: 119 EATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGV-TMMGVAEA 177
A +E+ + R G G ++ + ++ A
Sbjct: 120 SA---------SELIEEIVLTTRKNWRQFGRKGVIFEGSASEAAQKFPKNLNVAATLSIA 170
Query: 178 MNLGVK 183
VK
Sbjct: 171 SGKDVK 176
>4g65_A TRK system potassium uptake protein TRKA; structural genomics,
center for structural genomics of infec diseases,
csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Length = 461
Score = 32.2 bits (74), Expect = 0.069
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKE 32
G +A NL+ +D+ + DK+ D + L +
Sbjct: 15 GGTLAENLVGENNDITIVDKDGDRLRELQDK 45
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 32.2 bits (73), Expect = 0.080
Identities = 4/24 (16%), Positives = 9/24 (37%), Gaps = 1/24 (4%)
Query: 2 GSHMARNLLKNG-HDVIVYDKNTD 24
G ++ +L H + + T
Sbjct: 13 GKNLKADLTSTTDHHIFEVHRQTK 36
>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG;
1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A*
1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A*
2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A*
1a9y_A*
Length = 338
Score = 32.0 bits (74), Expect = 0.084
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 2 GSHMARNLLKNGHDVIVYD 20
GSH LL+NGHDVI+ D
Sbjct: 13 GSHTCVQLLQNGHDVIILD 31
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A
{Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Length = 281
Score = 31.8 bits (73), Expect = 0.092
Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 14/93 (15%)
Query: 1 MGSHMARNLLKNGHD--VIVYDKNTDASQTLAKEGA--NMALSLSTLA-SGAEFIISMLP 55
MG A++L ++G + YD N ++ G S++ + +F++ P
Sbjct: 12 MGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSP 71
Query: 56 ASQ--DVLDAYDGSDGILKHAKPGVIVID-SST 85
++ + V D S
Sbjct: 72 VRTFREIAKK------LSYILSEDATVTDQGSV 98
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific
opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter
SP} SCOP: a.100.1.5 c.2.1.6
Length = 359
Score = 32.0 bits (72), Expect = 0.11
Identities = 23/144 (15%), Positives = 40/144 (27%), Gaps = 16/144 (11%)
Query: 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVL 61
G A L G V+ +D + + + GA G + D+
Sbjct: 16 GHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAI-----IAEGPGLAGTAHPDLLTSDIG 70
Query: 62 DAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEAT 121
A +D IL ++ + + +++ E Q+ L G T A E
Sbjct: 71 LAVKDADVIL--------IVVPAIHHASIAANIASYISEGQLIIL---NPGATGGALEFR 119
Query: 122 LTFMVGGDKSSLEKAKPILKCMGR 145
G + R
Sbjct: 120 KILRENGAPEVTIGETSSMLFTCR 143
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta,
oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus}
PDB: 3ggg_D* 3ggp_A*
Length = 314
Score = 31.5 bits (72), Expect = 0.12
Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 13/89 (14%)
Query: 1 MGSHMARNLLKNGHD--VIVYDKNTDASQTLAKEGA--NMALSLSTLA-SGAEFIISMLP 55
MG A++L ++G + YD N ++ G S++ + +F++ P
Sbjct: 44 MGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSP 103
Query: 56 ASQ--DVLDAYDGSDGILKHAKPGVIVID 82
++ + V D
Sbjct: 104 VRTFREIAKK------LSYILSEDATVTD 126
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NADH complex, sugar binding protein; HET: NAI;
1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A*
2q1u_A*
Length = 377
Score = 31.5 bits (72), Expect = 0.13
Identities = 8/21 (38%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 2 GSHMARNLLKNG-HDVIVYDK 21
GS++ + LL+ G + V V D
Sbjct: 45 GSNLVKRLLELGVNQVHVVDN 65
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for
infectious disease, ssgcid, isomerase, NAD; HET: NAD
GUD; 1.90A {Burkholderia pseudomallei 1710B}
Length = 341
Score = 31.3 bits (72), Expect = 0.15
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 2 GSHMARNLLKNGHDVIVYD 20
GSH A LL +G+DV++ D
Sbjct: 18 GSHTAVELLAHGYDVVIAD 36
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism,
isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces
cerevisiae} SCOP: b.30.5.4 c.2.1.2
Length = 699
Score = 31.2 bits (71), Expect = 0.17
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 2 GSHMARNLLKNGHDVIVYD 20
GSH L++NG+D +V D
Sbjct: 24 GSHTVVELIENGYDCVVAD 42
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain
rossmann fold, C-terminal mixed alpha/beta domain; HET:
NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Length = 310
Score = 31.0 bits (71), Expect = 0.18
Identities = 7/20 (35%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 2 GSHMARNLLKNG-HDVIVYD 20
GS++ + L G D++V D
Sbjct: 12 GSNIVKALNDKGITDILVVD 31
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid
decarboxylase, structural genomics, STRU genomics
consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo
sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*
Length = 343
Score = 30.8 bits (70), Expect = 0.19
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 1 MGSHMARNLLKNGHDVIVYD 20
+GSH+ L+ +GH+V V D
Sbjct: 39 VGSHLTDKLMMDGHEVTVVD 58
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating
complex, structural GEN PSI-2-2, protein structure
initiative; HET: AMP; 3.45A {Thermotoga maritima}
Length = 218
Score = 30.6 bits (70), Expect = 0.20
Identities = 7/31 (22%), Positives = 19/31 (61%)
Query: 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKE 32
++AR++L + V++ +K+ + + AK+
Sbjct: 12 AYYLARSMLSRKYGVVIINKDRELCEEFAKK 42
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase,
carbohydrate metabolism, stress response; HET: NAP ADP
BMA; 2.36A {Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 30.7 bits (70), Expect = 0.25
Identities = 7/20 (35%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 2 GSHMARNLLKNG-HDVIVYD 20
GS++ + L G D++V D
Sbjct: 59 GSNIVKALNDKGITDILVVD 78
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 30.8 bits (68), Expect = 0.25
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 2 GSHMARNLLKNGHDVIVYDKN 22
G A+ L GH V ++DK+
Sbjct: 14 GLSAAQALTAAGHQVHLFDKS 34
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD
binding, isomerase; HET: NAD; 2.55A {Helicobacter
pylori}
Length = 362
Score = 30.3 bits (69), Expect = 0.31
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 2 GSHMARNLLKNG--HDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFI 50
GS++A + +N V+V DK + +++ + + E I
Sbjct: 23 GSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVI 73
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin,
bacteroides F oxidoreductase; HET: FAD; 2.09A
{Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A*
2y6r_A* 3p9u_A*
Length = 398
Score = 30.5 bits (69), Expect = 0.32
Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 18/76 (23%)
Query: 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPAS-QDV 60
G MA+ L +NG DV VY++ D + G + + S Q+
Sbjct: 38 GLTMAKLLQQNGIDVSVYER--DNDREARIFGGT---------------LDLHKGSGQEA 80
Query: 61 LDAYDGSDGILKHAKP 76
+ A P
Sbjct: 81 MKKAGLLQTYYDLALP 96
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 30.3 bits (69), Expect = 0.32
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKE 32
+G+ + R L + G V+ D A + A E
Sbjct: 19 LGAAVTRMLAQEGATVLGLDLKPPAGEEPAAE 50
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase,
galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A*
1i3l_A* 1i3m_A* 1i3n_A*
Length = 348
Score = 30.2 bits (69), Expect = 0.35
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 2 GSHMARNLLKNGHDVIVYD 20
GSH LL+ G+ +V D
Sbjct: 15 GSHTVLELLEAGYLPVVID 33
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, melioidosis,
glanders; 2.10A {Burkholderia pseudomallei}
Length = 372
Score = 29.7 bits (67), Expect = 0.45
Identities = 3/19 (15%), Positives = 9/19 (47%)
Query: 2 GSHMARNLLKNGHDVIVYD 20
G H+++ +L+ +
Sbjct: 37 GHHLSKRILETTDWEVFGM 55
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 30.0 bits (67), Expect = 0.46
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 2 GSHMARNLLKNGHDVIVYDKN 22
G+ + R L + GH V + D+
Sbjct: 15 GAVIGRQLAEKGHQVHIIDQR 35
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas,
oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten
maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Length = 404
Score = 29.8 bits (66), Expect = 0.51
Identities = 11/101 (10%), Positives = 31/101 (30%), Gaps = 20/101 (19%)
Query: 1 MGSHMARNLL-KNGHDVIVYDKNTDASQTLAKEGANMALSLST---LASGAEFIISMLPA 56
++ ++G +V V D ++ K L++ + E
Sbjct: 13 GAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVI 72
Query: 57 SQDVLDAYDGSDGIL----------------KHAKPGVIVI 81
++D A G+D ++ + + +++
Sbjct: 73 TKDPEIAISGADVVILTVPAFAHEGYFQAMAPYVQDSALIV 113
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for
structural genomics; HET: MSE; 1.50A {Streptococcus
agalactiae}
Length = 451
Score = 29.9 bits (68), Expect = 0.52
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 7/54 (12%)
Query: 5 MARNLLKNGHDVIVYDKNT----DASQTLAKEGANMAL---SLSTLASGAEFII 51
AR L K G V V D +Q+L +EG + L L ++I
Sbjct: 24 AARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMI 77
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 29.2 bits (66), Expect = 0.60
Identities = 4/19 (21%), Positives = 6/19 (31%)
Query: 2 GSHMARNLLKNGHDVIVYD 20
G M L + + D
Sbjct: 16 GRVMRERLAPMAEILRLAD 34
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 29.6 bits (67), Expect = 0.61
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKEGA 34
G H AR + GHD+++ + + Q LA
Sbjct: 26 GHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEP 58
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 29.3 bits (65), Expect = 0.76
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 2 GSHMARNLLKNGHDVIVYDKN 22
G+ A L K V+V +K
Sbjct: 13 GAVCANELKKLNKKVLVIEKR 33
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 28.7 bits (64), Expect = 0.91
Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 11/68 (16%)
Query: 2 GSHMARNLLKNGHDVIVY----DKNTDASQTLAKEGANMAL-------SLSTLASGAEFI 50
G+HM + LK GH V+ T GA + L L + +
Sbjct: 24 GNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVV 83
Query: 51 ISMLPASQ 58
IS L Q
Sbjct: 84 ISALAFPQ 91
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 28.6 bits (64), Expect = 1.0
Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 11/84 (13%)
Query: 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLA---SGAEFIISMLPASQ 58
G +AR G +V V +++ + + G L + I+ +P+
Sbjct: 169 GMTIARTFAALGANVKVGARSSAHLARITEMGLV-PFHTDELKEHVKDIDICINTIPSM- 226
Query: 59 DVLDAYDGSDGILKHAKPGVIVID 82
+L+ +L P +++D
Sbjct: 227 -ILNQ-----TVLSSMTPKTLILD 244
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 28.4 bits (64), Expect = 1.2
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKE 32
+G A L+ G ++ D + AK+
Sbjct: 24 LGLATAERLVGQGASAVLLDLPNSGGEAQAKK 55
>3cpx_A Aminopeptidase, M42 family; YP_676701.1, putative M42 glutamyl
aminopeptidase, structura genomics; 2.39A {Cytophaga
hutchinsonii atcc 33406}
Length = 321
Score = 28.5 bits (64), Expect = 1.2
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 76 PGVIVIDSSTVDPQVPQTLSNLAREKQITF-LDAPVSGGTKAA 117
+ + D + + LAR+ I F L+ +G +
Sbjct: 232 VAISMRDRMIPRKKYVNRIIELARQTDIPFQLEVEGAGASDGR 274
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 28.3 bits (63), Expect = 1.2
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Query: 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVL 61
G H+A+ L GH + + + AS K + ASGA + + ++
Sbjct: 17 GRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFK----ASGANIVHGSIDDHASLV 72
Query: 62 DAYDGSDGI 70
+A D +
Sbjct: 73 EAVKNVDVV 81
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 28.4 bits (63), Expect = 1.3
Identities = 15/134 (11%), Positives = 41/134 (30%), Gaps = 14/134 (10%)
Query: 1 MGSHMARNLLKNGHDVIV----YDKNTDASQTLAKEGAN----MALSLSTLASGAEFIIS 52
+G + + L NG V++ K +A + L L ++ + +
Sbjct: 24 IGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIA------T 77
Query: 53 MLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSG 112
M + + + D ++ +A +D+ + + +I
Sbjct: 78 MSSLADFIKTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQEL 137
Query: 113 GTKAAQEATLTFMV 126
++ + A +
Sbjct: 138 MSETYELAEECLKI 151
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET:
NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Length = 649
Score = 28.6 bits (63), Expect = 1.3
Identities = 12/103 (11%), Positives = 32/103 (31%), Gaps = 3/103 (2%)
Query: 73 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 132
+ P ++ + S D TL+ + + +++ + + S
Sbjct: 215 NGSPWILCVASGHTDRTFAGTLTL---GNGLKIRGWSLFPARAFVRDSPVIYNKTLSDCS 271
Query: 133 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVA 175
E+ ++ IV C D+G+ + ++
Sbjct: 272 SEELLSQVENPENTIVICDDNGDFSDQMRIITRARLKAAIFIS 314
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 28.2 bits (62), Expect = 1.5
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 2 GSHMARNLLKNGHDVIVYDK 21
GS +A L +G V++ D+
Sbjct: 41 GSVLAERLASSGQRVLIVDR 60
>2wyr_A Cobalt-activated peptidase TET1; hydrolase, large SELF-assembled
dodecamer, hyperthermophilic; 2.24A {Pyrococcus
horikoshii} PDB: 2cf4_A
Length = 332
Score = 28.0 bits (63), Expect = 1.6
Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 60 VLDAYDGSDGILKHAK----PGVIVIDSSTV-DPQVPQTLSNLAREKQITFLDAPVSGGT 114
+D++ + K P + +D+S + + + + ++A + I GGT
Sbjct: 226 AIDSFACCSPLTGDVKLGKGPVIRAVDNSAIYSRDLARKVWSIAEKNGIEIQIGVTGGGT 285
Query: 115 KAA 117
A+
Sbjct: 286 DAS 288
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 28.3 bits (64), Expect = 1.6
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQT 28
+GS +A L K + +++ T +T
Sbjct: 28 IGSAIAYYLAKENKNTALFESGTMGGRT 55
>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S
specificity, metallopeptidase M42, hydrolas; 2.70A
{Streptococcus pneumoniae}
Length = 355
Score = 27.6 bits (62), Expect = 2.1
Identities = 15/61 (24%), Positives = 19/61 (31%), Gaps = 2/61 (3%)
Query: 59 DVLDAYDGSDGILKHAK-PGVIVIDSSTV-DPQVPQTLSNLAREKQITFLDAPVSGGTKA 116
D A D G K + D + P + L A E I + GGT A
Sbjct: 237 DCSPAGDVYGGQGKIGDGTLIRFYDPGHLLLPGMKDFLLTTAEEAGIKYQYYCGKGGTDA 296
Query: 117 A 117
Sbjct: 297 G 297
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 27.6 bits (61), Expect = 2.6
Identities = 19/107 (17%), Positives = 33/107 (30%), Gaps = 21/107 (19%)
Query: 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVL 61
G + + GH V + S + + L GA+ I + L Q ++
Sbjct: 17 GKRIVNASISLGHPTYVLFRPEVVSNI-----DKVQMLLYFKQLGAKLIEASLDDHQRLV 71
Query: 62 DAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDA 108
DA D +VI + L Q+ ++A
Sbjct: 72 DALKQVD----------VVISALAGGVLSHHILE------QLKLVEA 102
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N
biosynthes methyltransferase, transferase; 2.3A
{Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A
1z75_A 1z7b_A 1z74_A
Length = 345
Score = 27.4 bits (61), Expect = 2.6
Identities = 7/20 (35%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 2 GSHMARNLLKNGH-DVIVYD 20
G+H+ LL+ H +V D
Sbjct: 13 GNHLTERLLREDHYEVYGLD 32
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi
conformation, oxidoreductase; HET: NAD PDC; 2.50A
{Staphylococcus aureus} PDB: 3ojl_A*
Length = 431
Score = 27.6 bits (62), Expect = 2.7
Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 17/92 (18%)
Query: 8 NLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISML--PASQD------ 59
+ L+NG I + + + G L +ST ++ I + P + D
Sbjct: 48 DKLQNGQISIEEPGLQEVYEEVLSSGK---LKVSTTPEASDVFIIAVPTPNNDDQYRSCD 104
Query: 60 ---VLDAYDGSDGILKHAKPGVIVIDSSTVDP 88
V+ A D IL K G +I ST+ P
Sbjct: 105 ISLVMRA---LDSILPFLKKGNTIIVESTIAP 133
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 27.3 bits (61), Expect = 2.8
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKE 32
+G R L +G V++ D + + LA E
Sbjct: 42 LGEATVRRLHADGLGVVIADLAAEKGKALADE 73
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase,
amidotransferase, ammonia assimilation, iron, zymogen;
HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Length = 456
Score = 27.5 bits (62), Expect = 2.8
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 6 ARNLLKNGHDVIVYDKN 22
A L G++V VYD+
Sbjct: 138 AEELRAKGYEVHVYDRY 154
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM
degradation, flavin reductase, diaphorase, green HAEM
binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP:
c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 27.3 bits (61), Expect = 2.9
Identities = 9/65 (13%), Positives = 25/65 (38%), Gaps = 7/65 (10%)
Query: 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMAL-------SLSTLASGAEFIISML 54
G ++ G++V V +++ + A++ + + +G + +I +L
Sbjct: 16 GLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLL 75
Query: 55 PASQD 59
D
Sbjct: 76 GTRND 80
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A
{Clarkia breweri}
Length = 321
Score = 27.2 bits (60), Expect = 3.3
Identities = 19/114 (16%), Positives = 32/114 (28%), Gaps = 24/114 (21%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDV 60
+G M R L H +Y T +++ L + G I + + +
Sbjct: 16 IGKFMVRASLSFSHPTFIY----ARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKM 71
Query: 61 LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGT 114
+ D IVI L QI ++A + G
Sbjct: 72 VSVLKQVD----------IVIS----------ALPFPMISSQIHIINAIKAAGN 105
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 27.0 bits (60), Expect = 3.4
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNT 23
+G A + + GH V+V +++T
Sbjct: 15 VGLATAWQVAERGHRVLVLERHT 37
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 27.2 bits (60), Expect = 3.5
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 1 MGSHMARN---LLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTL 43
+G RN L G+DV +D N ++ L + L++ST
Sbjct: 127 LGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENLNISTA 172
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis}
PDB: 3qlk_A 3s8d_A
Length = 455
Score = 27.0 bits (60), Expect = 3.7
Identities = 12/91 (13%), Positives = 33/91 (36%), Gaps = 7/91 (7%)
Query: 23 TDASQTLAKEGANMALSLSTLASG----AEFIISMLPASQDVLDAYDG--SDGILKHAKP 76
+++ A++ + L G + +L D L + + G++ +
Sbjct: 218 IPEYTSISHIIADLVPDGACLQMGVGALPNLVCGVLKDRND-LGIHTEVLNPGLVDLIRR 276
Query: 77 GVIVIDSSTVDPQVPQTLSNLAREKQITFLD 107
GV+ T+D + +++ +L+
Sbjct: 277 GVVTNQRKTLDRGRSVFTFAMGQQEMYEYLN 307
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium
channel, BK channel, rossmann fold, membrane protein;
2.40A {Escherichia coli} SCOP: c.2.1.9
Length = 153
Score = 26.6 bits (59), Expect = 3.8
Identities = 4/32 (12%), Positives = 11/32 (34%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKE 32
+ + L + G +V V + ++
Sbjct: 14 LAINTILQLNQRGQNVTVISNLPEDDIKQLEQ 45
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 26.8 bits (60), Expect = 4.2
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 6 ARNLLKNGHDVIVYDKNTDASQTLAKE 32
A L +G+ V++ ++ + + E
Sbjct: 24 AAGLATDGYRVVLIARSKQNLEKVHDE 50
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 26.7 bits (60), Expect = 4.5
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKEGAN 35
G + + L+ G V D + S AKE N
Sbjct: 15 GKQICLDFLEAGDKVCFIDIDEKRSADFAKERPN 48
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET:
NDP; 1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 26.5 bits (58), Expect = 4.5
Identities = 8/74 (10%), Positives = 19/74 (25%), Gaps = 5/74 (6%)
Query: 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMAL-----SLSTLASGAEFIISMLPA 56
GS + + GH+V+ ++ + + + ++ L
Sbjct: 13 GSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSV 72
Query: 57 SQDVLDAYDGSDGI 70
Y D
Sbjct: 73 PWGSGRGYLHLDFA 86
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural
genomics, protein structure initiative; 2.40A
{Methanosarcina mazei GO1}
Length = 478
Score = 26.9 bits (60), Expect = 4.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 64 YDGSDGILKHAKPGVIVIDSSTVDP 88
DG + K+ KPG++V+ ST+ P
Sbjct: 127 IDGIRNVGKYLKPGMLVVLESTITP 151
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 26.7 bits (59), Expect = 4.8
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 2 GSHMARNLLKNGHDVIVYDKNTD 24
GS A L + G +++ D
Sbjct: 18 GSSAAYQLSRRGLKILLVDSKPW 40
>1jet_A OPPA, oligo-peptide binding protein; complex (peptide
transport/peptide), peptide transport; 1.20A {Salmonella
typhimurium} SCOP: c.94.1.1 PDB: 1b05_A* 1b0h_A* 1b2h_A
1b1h_A 1b3f_A 1b3g_A 1b3h_A* 1b3l_A 1b40_A 1b46_A 1b4h_A
1b4z_A 1b51_A 1b52_A 1b58_A 1b5h_A 1b5i_A 1b5j_A 1b6h_A
1b7h_A ...
Length = 517
Score = 26.8 bits (60), Expect = 4.9
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 108 APVSGGTKAAQEATLTFMVGGDKSSL 133
A V G + A + TL G + SL
Sbjct: 1 ADVPAGVQLADKQTLVRNNGSEVQSL 26
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 26.4 bits (59), Expect = 5.2
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKE 32
G +A+ L K+ VI + + ++ E
Sbjct: 57 GREIAKMLAKSVSHVICISRTQKSCDSVVDE 87
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A
Length = 317
Score = 26.3 bits (59), Expect = 5.3
Identities = 9/36 (25%), Positives = 12/36 (33%)
Query: 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMA 37
G + + L G D +D L EG A
Sbjct: 34 GRLVLQGLRDAGIDAHPFDPAERPLSALKDEGFVRA 69
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell
cycle, cell division, cell shape, cell WAL
biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia
coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A*
2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A*
2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Length = 439
Score = 26.7 bits (60), Expect = 5.6
Identities = 26/157 (16%), Positives = 41/157 (26%), Gaps = 49/157 (31%)
Query: 5 MARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAY 64
L G V D L L E L + L A
Sbjct: 20 CVDFFLARGVTPRVMDTRMTPPG------------LDKLPEAVERHTGSLND--EWLMAA 65
Query: 65 DGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQIT----------FLDAPVSGGT 114
D +++ S + P + A + I AP+ T
Sbjct: 66 D-------------LIVASPGIALAHP--SLSAAADAGIEIVGDIELFCREAQAPIVAIT 110
Query: 115 KAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCG 151
+ ++T+T +VG + K G N+ G
Sbjct: 111 GSNGKSTVTTLVGE----------MAKAAGVNVGVGG 137
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 26.1 bits (57), Expect = 6.2
Identities = 11/79 (13%), Positives = 24/79 (30%), Gaps = 5/79 (6%)
Query: 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSL----STLASGAEFIISMLPAS 57
GS + GH+V +N K+ + + + S ++ S
Sbjct: 13 GSRILEEAKNRGHEVTAIVRNAGKITQTHKDINILQKDIFDLTLSDLSDQNVVVDAYGIS 72
Query: 58 QDVLDAY-DGSDGILKHAK 75
D + + D ++
Sbjct: 73 PDEAEKHVTSLDHLISVLN 91
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Length = 302
Score = 26.4 bits (59), Expect = 6.2
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 93 TLSNLAREKQITFLDAPVSGGTKAAQEATL 122
L ++ I + PV K A +
Sbjct: 144 DLRSMVEWHDIPYYHVPVDPKDKEPAFAEV 173
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 26.5 bits (59), Expect = 6.3
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 2 GSHMARNLLKNGHDVIVYDKNTD 24
GS AR K G ++ +K +
Sbjct: 16 GSTAARYAAKYGLKTLMIEKRPE 38
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 26.4 bits (59), Expect = 6.4
Identities = 2/20 (10%), Positives = 5/20 (25%)
Query: 5 MARNLLKNGHDVIVYDKNTD 24
G V ++ +
Sbjct: 36 AIHRFRSQGLTVRAFEAASG 55
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain,
structural genomics, joint C structural genomics, JCSG;
HET: MSE; 2.25A {Pseudomonas putida}
Length = 286
Score = 26.4 bits (59), Expect = 6.4
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 93 TLSNLAREKQITFLDAPVSGGTKAAQEATL 122
L LA +I + + K QE +
Sbjct: 129 DLEPLAHWHKIPYYHFALDPKDKPGQERKV 158
>4e16_A Precorrin-4 C(11)-methyltransferase; structural genomics, center
for structural genomics of infec diseases, csgid; 2.49A
{Clostridium difficile}
Length = 253
Score = 26.3 bits (59), Expect = 6.6
Identities = 7/41 (17%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 64 YDGS---DGILKHAKPGVIVIDSSTVD-PQVPQTLSNLARE 100
Y GS +L++ K + +S+ +D ++ +
Sbjct: 36 YAGSLVNPELLEYCKEDCQIHNSAHMDLQEIIDVMREGIEN 76
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus
sphaericus} SCOP: c.2.1.7 c.58.1.1
Length = 364
Score = 26.3 bits (59), Expect = 6.8
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKE 32
+ + L G ++V D N A E
Sbjct: 185 AKALCKKLNTEGAKLVVTDVNKAAVSAAVAE 215
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 26.0 bits (57), Expect = 7.0
Identities = 17/107 (15%), Positives = 30/107 (28%), Gaps = 23/107 (21%)
Query: 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVL 61
G H+ +K G+ + T A L + + G + + + ++
Sbjct: 15 GRHIVWASIKAGNPTYAL---VRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLV 71
Query: 62 DAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDA 108
A D IVI L E Q+ + A
Sbjct: 72 KAIKQVD----------IVIC----------AAGRLLIEDQVKIIKA 98
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain
dehydrogenase reductase, flavonoi oxidoreductase; HET:
NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Length = 346
Score = 26.1 bits (57), Expect = 7.1
Identities = 15/111 (13%), Positives = 29/111 (26%), Gaps = 22/111 (19%)
Query: 2 GSHMARNLLKNGHDVIVY-------DKNTDASQTLAKEGANMAL----SLSTLAS----- 45
G +A L + + L +GA + +
Sbjct: 23 GQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEH 82
Query: 46 GAEFIISMLPASQ-----DVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVP 91
+ ++S + ++ A G +K P D + DP P
Sbjct: 83 EIDIVVSTVGGESILDQIALVKAMKAV-GTIKRFLPSEFGHDVNRADPVEP 132
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase;
agrobacterium tumefa structural genomics, PSI-2,
protein structure initiative; 1.85A {Agrobacterium
tumefaciens}
Length = 342
Score = 26.2 bits (58), Expect = 7.1
Identities = 5/26 (19%), Positives = 10/26 (38%), Gaps = 7/26 (26%)
Query: 2 GSHMARNLLKNG-------HDVIVYD 20
G + + L+K+G + D
Sbjct: 27 GRKLTQRLVKDGSLGGKPVEKFTLID 52
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 26.2 bits (58), Expect = 7.3
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 9 LLKNGHDVIVYDKN 22
L +NGH++IV +K+
Sbjct: 19 LARNGHEIIVLEKS 32
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for
structural genomics, JCSG, protein structure initiative
hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Length = 292
Score = 26.0 bits (58), Expect = 7.3
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 93 TLSNLAREKQITFLDAPVSGGTKAAQEATL 122
+ LA + + F P++ TKA QEA
Sbjct: 134 DFAPLAAQHGLPFRHFPITADTKAQQEAQW 163
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A
{Rhodobacter capsulatus} PDB: 3nei_A
Length = 264
Score = 25.9 bits (58), Expect = 7.4
Identities = 8/41 (19%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 64 YDGS---DGILKHAKPGVIVIDSSTVD-PQVPQTLSNLARE 100
Y GS + +L H PG +++++ + + T++
Sbjct: 35 YAGSLVPEALLAHCPPGAKIVNTAPMSLDAIIDTIAEAHAA 75
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 26.4 bits (59), Expect = 7.5
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 5 MARNLLKNGHDVIVYDKNTD 24
L + G V V + D
Sbjct: 31 ALYRLRELGRSVHVIETAGD 50
>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint
center for structural genomics, JCSG, protein structu
initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga
maritima}
Length = 335
Score = 25.9 bits (58), Expect = 7.8
Identities = 10/85 (11%), Positives = 32/85 (37%), Gaps = 12/85 (14%)
Query: 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKEGAN-----MALSL---STLA--SGAEFII 51
G+ A+ L +NG +VI++ + + + + +++ + L + ++
Sbjct: 26 GTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEEIKKEDILV 85
Query: 52 SMLPASQ--DVLDAYDGSDGILKHA 74
+P + L ++ +
Sbjct: 86 IAIPVQYIREHLLRLPVKPSMVLNL 110
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol,
structural genomics, for structural genomics of
infectious diseases, csgid; HET: MSE ATP; 2.00A
{Bacillus anthracis} PDB: 3r23_A*
Length = 307
Score = 25.9 bits (58), Expect = 7.9
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 2 GSHMARNLLKNGHDVIVYDKNTDASQTLAKEGANMA 37
G+ M NL KN ++++ N + + A
Sbjct: 24 GNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFA 59
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance,
glycosylation, enzyme, macrolide, carbohydrate; HET: ERY
UDP; 1.7A {Streptomyces antibioticus}
Length = 430
Score = 25.9 bits (57), Expect = 8.1
Identities = 14/88 (15%), Positives = 24/88 (27%), Gaps = 13/88 (14%)
Query: 6 ARNLLKNGHDVIVYDKNTDAS--QTLAKEGANMA--------LSLSTLASGAEFIISMLP 55
R L+ GH V +A G A G+ + ++ P
Sbjct: 28 IRELVARGHRVTYA---IPPVFADKVAATGPRPVLYHSTLPGPDADPEAWGSTLLDNVEP 84
Query: 56 ASQDVLDAYDGSDGILKHAKPGVIVIDS 83
D + A P +++ D
Sbjct: 85 FLNDAIQALPQLADAYADDIPDLVLHDI 112
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP
complex, stranded beta-sheet core with solvent exposed
alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Length = 349
Score = 26.0 bits (58), Expect = 8.4
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 5/24 (20%)
Query: 25 ASQTLA-----KEGANMALSLSTL 43
A+QT A KEG N+ SL L
Sbjct: 241 AAQTGAAGVRLKEGCNINRSLFIL 264
>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase;
1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6
Length = 335
Score = 26.0 bits (58), Expect = 8.6
Identities = 11/73 (15%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQ--TLAKEGANMALSLSTLASGAEFIISMLPASQ 58
MGS ++ L+ NG++V ++ D +++ + L G + + +
Sbjct: 11 MGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRL-------GVKLNGVEIFWPE 63
Query: 59 DVLDAYDGSDGIL 71
+ + ++ +L
Sbjct: 64 QLEKCLENAEVVL 76
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C,
northeast structural genomics consortium, NESG, C
PSI-biology; 2.00A {Corynebacterium glutamicum}
Length = 516
Score = 25.8 bits (57), Expect = 9.6
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 2 GSHMARNLLKNGHDVIV 18
G + L GH+VI
Sbjct: 160 GRALTAQLQTGGHEVIQ 176
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 25.6 bits (57), Expect = 9.9
Identities = 8/35 (22%), Positives = 18/35 (51%)
Query: 1 MGSHMARNLLKNGHDVIVYDKNTDASQTLAKEGAN 35
+G+ + R + +G V++ DK+ + L +E
Sbjct: 21 IGAGIVRAFVNSGARVVICDKDESGGRALEQELPG 55
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.130 0.362
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,662,135
Number of extensions: 151547
Number of successful extensions: 765
Number of sequences better than 10.0: 1
Number of HSP's gapped: 713
Number of HSP's successfully gapped: 211
Length of query: 183
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 95
Effective length of database: 4,244,745
Effective search space: 403250775
Effective search space used: 403250775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (24.4 bits)