BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7550
(144 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of
Adp-Ribosylation Factor Gtpaseactivating Protein 3
(Arfgap 3)
Length = 149
Score = 204 bits (520), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 89/133 (66%), Positives = 111/133 (83%)
Query: 6 PNKNDIEVIFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVR 65
P+K DI IFK+LR++PTNK CFDC AKNP+W+S+TYGVF+CIDCS HR LGVHLSF+R
Sbjct: 11 PSKQDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIR 70
Query: 66 STQLDTNWTWVQLRQMQLGGNANAVSFFNQHNCTSKDAQQKYNSRAAQLYREKLQHAAVQ 125
ST+LD+NW+W QLR MQ+GGNA+A SFF+QH C++ D KYNSRAAQLYREK++ A Q
Sbjct: 71 STELDSNWSWFQLRCMQVGGNASASSFFHQHGCSTNDTNAKYNSRAAQLYREKIKSLASQ 130
Query: 126 AMKIHGTKLFLDA 138
A + HGT L+LD+
Sbjct: 131 ATRKHGTDLWLDS 143
>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein
Length = 144
Score = 198 bits (504), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 84/126 (66%), Positives = 103/126 (81%)
Query: 6 PNKNDIEVIFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVR 65
PNK +I+ +FK+LR +PTNK CFDC AKNP+W+S+TYGVF+CIDCS VHR LGVHLSF+R
Sbjct: 19 PNKTEIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIR 78
Query: 66 STQLDTNWTWVQLRQMQLGGNANAVSFFNQHNCTSKDAQQKYNSRAAQLYREKLQHAAVQ 125
ST+LD+NW W QLR MQ+GGNANA +FF QH CT+ DA KYNSRAAQ+YREK++
Sbjct: 79 STELDSNWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQLGSA 138
Query: 126 AMKIHG 131
A+ HG
Sbjct: 139 ALARHG 144
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 71/110 (64%), Gaps = 7/110 (6%)
Query: 14 IFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNW 73
+ K++R N CF+C A NP W SVTYG++IC++CS HRGLGVHLSFVRS +D W
Sbjct: 27 VLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMD-KW 85
Query: 74 TWVQLRQMQLGGNANAVSFFNQHN----CTSKDAQQKYNSRAAQLYREKL 119
++L +M+ GGNA F C S Q+KYNSRAA L+R+K+
Sbjct: 86 KDIELEKMKAGGNAKFREFLESQEDYDPCWS--LQEKYNSRAAALFRDKV 133
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
pdb|3DWD|B Chain B, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
Length = 147
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 71/110 (64%), Gaps = 7/110 (6%)
Query: 14 IFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNW 73
+ K++R N CF+C A NP W SVTYG++IC++CS HRGLGVHLSFVRS +D W
Sbjct: 28 VLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMD-KW 86
Query: 74 TWVQLRQMQLGGNANAVSFFNQHN----CTSKDAQQKYNSRAAQLYREKL 119
++L +M+ GGNA F C S Q+KYNSRAA L+R+K+
Sbjct: 87 KDIELEKMKAGGNAKFREFLESQEDYDPCWS--LQEKYNSRAAALFRDKV 134
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
pdb|2OWA|B Chain B, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
Length = 138
Score = 100 bits (249), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 62/81 (76%), Gaps = 1/81 (1%)
Query: 15 FKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWT 74
F+ +RN P N+ CFDC ++NPTW S+++ VFIC++CS+ HR +GVH+SFVRS+ LD +T
Sbjct: 27 FQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDK-FT 85
Query: 75 WVQLRQMQLGGNANAVSFFNQ 95
+QL +M +GGN A ++F Q
Sbjct: 86 PIQLVRMDIGGNGRARNYFKQ 106
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
pdb|3SUB|B Chain B, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
Length = 163
Score = 94.4 bits (233), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 68/110 (61%), Gaps = 1/110 (0%)
Query: 11 IEVIFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLD 70
+E I + + +N +CFDC NP W SV +G+F+CI+CS VHR LGVH+S VRS ++D
Sbjct: 9 VEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMD 68
Query: 71 TNWTWVQLRQMQLGGNANAVSFFNQHNCTSKDAQQKYNSRAAQLYREKLQ 120
+T QL+ + GGN ++ + + ++KY ++AA YR+ L+
Sbjct: 69 I-FTDEQLKYIDKGGNKKCQTYLENYGISDFIPERKYRTKAADHYRKILR 117
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1
Length = 141
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 12 EVIFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDT 71
++I KL NK C DC AK P W+S GVFICI C+ +HR LGVH+S V+S LD
Sbjct: 17 QLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLD- 75
Query: 72 NWTWVQLRQMQLGGNANAVSFF 93
WT Q++ MQ GN A +
Sbjct: 76 QWTAEQIQCMQDMGNTKARLLY 97
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
pdb|2IQJ|B Chain B, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
Length = 134
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 24 NKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQL 83
NK C DC +K P W+S GVFICI C+ +HR LGVH+S V+S LD WT Q++ MQ
Sbjct: 27 NKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLD-QWTQEQIQCMQE 85
Query: 84 GGNANAVSFFNQH 96
GN A + +
Sbjct: 86 MGNGKANRLYEAY 98
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of
Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of
Acap1
Length = 368
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 14 IFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDT 71
+ +++++ N +C DC P W+S+ GV +CI CS +HR LGVH S VRS LD+
Sbjct: 35 VVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDS 92
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 14 IFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDT 71
+ +++++ N +C DC P W+S+ GV +CI CS +HR LGVH S VRS LD+
Sbjct: 35 VVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDS 92
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 14 IFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDT 71
+ +++++ N +C DC P W+S+ GV +CI CS +HR LGVH S VRS LD+
Sbjct: 35 VVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDS 92
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 4/124 (3%)
Query: 2 SGEGPNKNDI-EVIFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVH 60
SG +D+ +++ ++++ P N +C DC A +PTW S GV CI CS VHR LGV
Sbjct: 19 SGHDGEPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVR 78
Query: 61 LSFVRSTQLDTNWTWVQLRQMQLGGNA-NAV--SFFNQHNCTSKDAQQKYNSRAAQLYRE 117
S ++S LD L + +G + N V + H A+ +R + +
Sbjct: 79 FSRMQSLTLDLLGPSELLLALNMGNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAK 138
Query: 118 KLQH 121
++H
Sbjct: 139 YVEH 142
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 62.8 bits (151), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%)
Query: 4 EGPNKNDIEVIFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSF 63
+G + +++ ++++ P N +C DC A +PTW S GV CI CS VHR LGV S
Sbjct: 3 DGEPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSR 62
Query: 64 VRSTQLD 70
++S LD
Sbjct: 63 MQSLTLD 69
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3FM8|D Chain D, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3MDB|C Chain C, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
pdb|3MDB|D Chain D, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
Length = 392
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 17 KLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWV 76
+L P N C DC A +P W+S T GVFIC+ CS +HR + +S V+S +LD W
Sbjct: 29 ELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDA-WEEA 86
Query: 77 QLRQMQLGGNANAVSFFN 94
Q+ M GN A + F
Sbjct: 87 QVEFMASHGNDAARARFE 104
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1
pdb|3LJU|X Chain X, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Head Group Of Pip3
Length = 386
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 17 KLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWV 76
+L P N C DC A +P W+S T GVFIC+ CS +HR + +S V+S +LD W
Sbjct: 27 ELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDA-WEEA 84
Query: 77 QLRQMQLGGNANAVSFFN 94
Q+ M GN A + F
Sbjct: 85 QVEFMASHGNDAARARFE 102
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%)
Query: 14 IFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNW 73
I +++ + N C DC A +PTW S G+ CI+CS +HR LGVH S ++S LD
Sbjct: 7 IISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLG 66
Query: 74 TWVQLRQMQLG 84
T L +G
Sbjct: 67 TSELLLAKNIG 77
>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein
Length = 140
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 14 IFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNW 73
+ + + +P N++CFDC+ + PT+ ++T G F+C CS RGL V+S + T +
Sbjct: 15 MLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHR-VKSISM-TTF 72
Query: 74 TWVQLRQMQLGGN 86
T ++ +Q GN
Sbjct: 73 TQQEIEFLQKHGN 85
>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip
Length = 134
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 14 IFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGL 57
+ + + +P N++CFDC+ + PT+ ++T G F+C CS RGL
Sbjct: 10 MLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGL 53
>pdb|2DBI|A Chain A, Crystal Structure Of A Hypothetical Protein Jw0805 From
Escherichia Coli
pdb|2DBN|A Chain A, Crystal Structure Of A Hypothetical Protein Jw0805 At High
Ph From Escherichia Coli
Length = 461
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 53 VHRGLGVH----LSFVRSTQLDTNWTWVQLRQMQLGGNANAVSFFNQHNCTSKDAQQKYN 108
V++G G + LS R W+ Q++ Q ANA SF N+ D +Q +N
Sbjct: 158 VYKGPGDNFFGTLSASRPEIYPIYWSQAQMQARQSEEMANAQSFLNRLWTFESDGKQWFN 217
Query: 109 SRAAQLYREKLQ 120
+ +Y ++++
Sbjct: 218 PDVSVIYPDRIR 229
>pdb|3BVO|A Chain A, Crystal Structure Of Human Co-Chaperone Protein Hscb
pdb|3BVO|B Chain B, Crystal Structure Of Human Co-Chaperone Protein Hscb
Length = 207
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 13/115 (11%)
Query: 27 CFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFV-----RSTQLDTNWTWVQLRQM 81
C++C W F C C A+ F RS ++DT + +Q+
Sbjct: 13 CWNCGG---PWGPGREDRFFCPQCRALQAPDPTRDYFSLXDCNRSFRVDTAKLQHRYQQL 69
Query: 82 QLGGNANAVSFFNQHNCTSKDAQQKYNSRAAQLYREKLQHAA--VQAMKIHGTKL 134
Q + + FF+Q + T KD +K+++ Y+ L + + +K+HG ++
Sbjct: 70 QRLVHPD---FFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGIEI 121
>pdb|3VD6|C Chain C, Both Zn Fingers Of Gata1 Bound To Palindromic Dna
Recognition Site, P21 Crystal Form
pdb|3VEK|C Chain C, Both Zn Fingers Of Gata1 Bound To Palindromic Dna
Recognition Site, P1 Crystal Form
pdb|3VEK|F Chain F, Both Zn Fingers Of Gata1 Bound To Palindromic Dna
Recognition Site, P1 Crystal Form
Length = 119
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 25 KECFDCNA-KNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQ 68
+EC +C A P W G ++C C H+ G + +R +
Sbjct: 3 RECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQNRPLIRPKK 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.132 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,271,473
Number of Sequences: 62578
Number of extensions: 145543
Number of successful extensions: 305
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 282
Number of HSP's gapped (non-prelim): 24
length of query: 144
length of database: 14,973,337
effective HSP length: 89
effective length of query: 55
effective length of database: 9,403,895
effective search space: 517214225
effective search space used: 517214225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)