Query psy7550
Match_columns 144
No_of_seqs 161 out of 1088
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 21:16:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7550.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7550hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2crw_A ARF GAP 3, ADP-ribosyla 100.0 9.4E-51 3.2E-55 304.1 13.3 138 3-140 8-145 (149)
2 2p57_A GTPase-activating prote 100.0 1.4E-48 4.8E-53 290.5 10.2 129 3-131 16-144 (144)
3 2owa_A Arfgap-like finger doma 100.0 2.6E-45 8.9E-50 271.7 10.0 119 5-124 17-137 (138)
4 3dwd_A ADP-ribosylation factor 100.0 4.5E-45 1.5E-49 272.1 10.7 117 7-124 21-139 (147)
5 3sub_A ADP-ribosylation factor 100.0 3.4E-45 1.2E-49 276.4 8.9 128 9-139 6-134 (163)
6 2iqj_A Stromal membrane-associ 100.0 3.7E-40 1.3E-44 243.1 5.5 116 5-122 8-123 (134)
7 2crr_A Stromal membrane-associ 100.0 4.2E-39 1.4E-43 239.3 7.9 114 7-122 12-125 (141)
8 2olm_A Nucleoporin-like protei 100.0 1.4E-37 4.7E-42 230.9 8.7 89 8-98 9-97 (140)
9 3o47_A ADP-ribosylation factor 100.0 8.5E-36 2.9E-40 245.0 10.5 116 7-123 20-137 (329)
10 3jue_A Arfgap with coiled-coil 100.0 2.1E-34 7.3E-39 240.6 7.0 92 5-97 26-117 (368)
11 3lju_X ARF-GAP with dual PH do 100.0 8E-33 2.7E-37 233.1 9.2 114 7-122 17-132 (386)
12 2b0o_E UPLC1; arfgap, structur 100.0 1.2E-30 4E-35 210.9 9.3 90 7-97 25-114 (301)
13 1dcq_A PYK2-associated protein 100.0 2.3E-30 8E-35 206.8 7.0 87 10-97 3-89 (278)
14 3lvq_E ARF-GAP with SH3 domain 100.0 3.7E-30 1.3E-34 219.7 5.7 90 7-97 6-95 (497)
15 1gnf_A Transcription factor GA 93.4 0.06 2E-06 32.1 2.8 39 22-60 2-41 (46)
16 3dfx_A Trans-acting T-cell-spe 91.4 0.12 4.2E-06 32.7 2.5 40 20-59 3-43 (63)
17 2vut_I AREA, nitrogen regulato 90.4 0.16 5.3E-06 29.8 2.1 35 25-59 2-37 (43)
18 1u5k_A Hypothetical protein; O 89.2 0.49 1.7E-05 36.3 4.8 47 21-84 147-193 (244)
19 4gat_A Nitrogen regulatory pro 88.0 0.32 1.1E-05 31.0 2.5 39 22-60 7-46 (66)
20 4hc9_A Trans-acting T-cell-spe 84.9 0.44 1.5E-05 33.4 2.1 36 24-59 5-41 (115)
21 2kae_A GATA-type transcription 81.9 0.46 1.6E-05 30.7 1.1 38 22-60 6-46 (71)
22 1tjl_A DNAK suppressor protein 77.1 1.1 3.6E-05 32.8 1.8 34 21-54 108-142 (151)
23 2kgo_A Uncharacterized protein 73.3 0.52 1.8E-05 32.8 -0.7 33 23-55 55-88 (108)
24 2ebl_A COUP transcription fact 72.6 2 6.7E-05 28.7 2.1 33 21-56 4-36 (89)
25 4hc9_A Trans-acting T-cell-spe 71.6 2.7 9.2E-05 29.3 2.7 39 22-60 57-96 (115)
26 1hcq_A Protein (estrogen recep 71.3 2.1 7.4E-05 28.1 2.1 32 22-56 2-33 (84)
27 3g9m_A Glucocorticoid receptor 71.2 1.9 6.4E-05 28.7 1.8 30 23-55 1-30 (90)
28 1ffk_W Ribosomal protein L37AE 68.2 3.3 0.00011 26.7 2.4 40 11-52 13-53 (73)
29 1r4i_A Androgen receptor; AR, 67.2 2.3 8E-05 29.2 1.6 33 21-56 4-36 (105)
30 1d4u_A Nucleotide excision rep 66.8 1.4 4.8E-05 30.7 0.4 31 23-53 4-35 (111)
31 2han_B Ecdysone receptor; tran 66.4 3.3 0.00011 28.9 2.3 31 23-56 7-37 (119)
32 2nll_B Protein (thyroid hormon 66.2 2.4 8.3E-05 28.9 1.5 29 25-56 2-30 (103)
33 2han_A Protein ultraspiracle; 65.8 3 0.0001 27.9 1.9 31 23-56 9-39 (93)
34 2a66_A Orphan nuclear receptor 65.7 1.8 6.1E-05 30.2 0.8 33 20-55 5-37 (113)
35 1dsz_A RAR-alpha, retinoic aci 61.4 3.5 0.00012 27.1 1.6 29 25-56 5-33 (86)
36 1cit_A NGFI-B, protein (orphan 61.2 4.7 0.00016 26.7 2.2 27 26-55 2-28 (89)
37 1a6y_A Orphan nuclear receptor 60.1 3.8 0.00013 27.5 1.6 32 22-56 5-36 (94)
38 1ynw_B Retinoic acid receptor 59.9 3.5 0.00012 28.0 1.4 30 24-56 3-32 (99)
39 1kb2_A Vitamin D3 receptor; VD 59.7 3.5 0.00012 28.5 1.4 31 23-56 5-35 (110)
40 1lo1_A Steroid hormone recepto 56.7 3.1 0.00011 28.2 0.7 30 24-56 4-33 (98)
41 3dzy_D Peroxisome proliferator 56.0 6.3 0.00022 32.7 2.6 31 22-55 48-78 (419)
42 1dsz_B RXR-alpha, retinoic aci 55.9 2.9 9.9E-05 27.5 0.4 31 23-56 4-34 (85)
43 4hn5_A Glucocorticoid receptor 54.8 5.2 0.00018 27.9 1.6 34 19-55 24-57 (117)
44 3cbb_A HNF-4-alpha, hepatocyte 53.5 5.6 0.00019 25.7 1.5 28 26-56 2-29 (78)
45 2kq9_A DNAK suppressor protein 49.1 3.1 0.00011 28.6 -0.3 41 11-52 69-110 (112)
46 1vq8_Z 50S ribosomal protein L 48.5 4.6 0.00016 26.6 0.5 41 11-53 13-54 (83)
47 1dl6_A Transcription factor II 47.9 6.7 0.00023 23.8 1.1 28 25-53 12-39 (58)
48 2uzg_A Ubiquitin carboxyl-term 45.1 8.7 0.0003 25.6 1.5 28 22-49 23-53 (97)
49 3iz6_N 40S ribosomal protein S 42.0 25 0.00086 21.4 3.1 39 22-65 16-54 (56)
50 3c5k_A HD6, histone deacetylas 39.9 12 0.0004 25.6 1.5 26 23-48 23-48 (109)
51 1x58_A Hypothetical protein 49 38.5 50 0.0017 20.4 4.1 26 72-98 10-39 (62)
52 3cc2_Z 50S ribosomal protein L 37.3 5.6 0.00019 27.9 -0.5 40 11-52 46-86 (116)
53 3a1b_A DNA (cytosine-5)-methyl 37.1 38 0.0013 24.8 4.0 47 6-52 16-64 (159)
54 3j21_d 50S ribosomal protein L 37.0 18 0.0006 24.1 1.9 29 23-52 32-77 (89)
55 3dzy_A Retinoic acid receptor 36.1 8.8 0.0003 32.4 0.4 30 23-55 136-165 (467)
56 3j21_g 50S ribosomal protein L 35.0 7.3 0.00025 23.4 -0.2 25 22-52 12-36 (51)
57 2g45_A Ubiquitin carboxyl-term 30.0 19 0.00066 25.3 1.3 29 21-49 31-59 (129)
58 3k7a_M Transcription initiatio 29.9 14 0.00049 29.7 0.7 30 25-54 22-52 (345)
59 3po3_S Transcription elongatio 27.7 47 0.0016 24.4 3.2 29 24-52 137-173 (178)
60 2ds5_A CLPX, ATP-dependent CLP 27.6 35 0.0012 20.2 2.0 31 23-53 10-42 (51)
61 3u5e_g 60S ribosomal protein L 27.1 26 0.0009 24.6 1.6 30 23-52 40-86 (121)
62 4bbr_M Transcription initiatio 26.9 21 0.00073 28.9 1.2 27 26-52 23-50 (345)
63 2yqk_A Arginine-glutamic acid 26.1 48 0.0016 20.0 2.5 18 64-82 4-21 (63)
64 1ovx_A ATP-dependent CLP prote 25.8 32 0.0011 21.7 1.6 30 24-53 18-49 (67)
65 3k1f_M Transcription initiatio 24.0 30 0.001 26.1 1.5 28 26-53 23-51 (197)
66 1pft_A TFIIB, PFTFIIBN; N-term 24.0 17 0.00057 20.9 0.0 27 25-52 6-32 (50)
67 3d00_A Tungsten formylmethanof 23.9 15 0.00052 27.4 -0.2 24 24-52 163-186 (191)
68 2ysa_A Retinoblastoma-binding 23.4 41 0.0014 20.2 1.8 17 21-38 4-20 (55)
69 4a18_L RPL34; ribosome, eukary 23.3 33 0.0011 24.1 1.5 14 39-52 75-88 (123)
70 1qyp_A RNA polymerase II; tran 23.2 9.8 0.00034 22.6 -1.1 30 24-53 15-52 (57)
71 3j20_P 30S ribosomal protein S 21.6 55 0.0019 19.8 2.1 29 22-52 16-44 (56)
72 2juh_A Telomere binding protei 20.9 1.2E+02 0.004 21.1 3.9 40 73-112 20-68 (121)
73 2lyy_A Uncharacterized protein 20.9 1.1E+02 0.0037 20.5 3.6 59 73-131 27-85 (96)
74 3iz5_i 60S ribosomal protein L 20.5 48 0.0016 23.2 1.8 29 24-52 41-88 (119)
75 2pv0_B DNA (cytosine-5)-methyl 20.0 80 0.0027 26.3 3.4 43 10-52 34-78 (386)
No 1
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=9.4e-51 Score=304.11 Aligned_cols=138 Identities=64% Similarity=1.154 Sum_probs=132.3
Q ss_pred CCCCChhHHHHHHHHHhcCCCCCCccCCCCCCCCceeeccchhcchhhhhhhhcCCCCCcceeeccCCCCCCHHHHHHHH
Q psy7550 3 GEGPNKNDIEVIFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQ 82 (144)
Q Consensus 3 ~~~~~~~~~~~~~~~L~~~~~N~~C~DCg~~~p~w~s~~~GiflC~~CsgiHR~lg~~iS~VkS~~ld~~w~~~~l~~m~ 82 (144)
|..+++++.+++|+.|++.|+|+.|||||+++|+|+|+|||||||++|+|+||.||+|||+||||+||+.|+++||+.|+
T Consensus 8 m~~~~k~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m~ 87 (149)
T 2crw_A 8 MGDPSKQDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQ 87 (149)
T ss_dssp SCCCCHHHHHHHHHHHHHSTTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhcCcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHHH
Confidence 44578999999999999999999999999999999999999999999999999999999999999999449999999999
Q ss_pred hhChHHHHHHHhhcCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeeecCCC
Q psy7550 83 LGGNANAVSFFNQHNCTSKDAQQKYNSRAAQLYREKLQHAAVQAMKIHGTKLFLDAMH 140 (144)
Q Consensus 83 ~gGN~~~~~~~e~~~~~~~~~~~ky~~~~~~~yr~kl~~~~~~~~~~~~~~~~~~~~~ 140 (144)
.+||.++|+||++++.+..++++||+++++++||++|.+++++++++||++|++|+..
T Consensus 88 ~~GN~~an~~~e~~~~~~~~i~~KY~s~~a~~Yr~~l~~~~~~~~~~~~~~~~~~~~~ 145 (149)
T 2crw_A 88 VGGNASASSFFHQHGCSTNDTNAKYNSRAAQLYREKIKSLASQATRKHGTDLWLDSSG 145 (149)
T ss_dssp TTCHHHHHHHHHHHCCCCCCHHHHTTSHHHHHHHHHHHHHHHHHHHTTSSSCTTSCCC
T ss_pred HHhhHHHHHHHHhcCCCCcchhhCcCcHHHHHHHHHHHHHHHHHHHHcCCeeEeCCCC
Confidence 9999999999999999999999999999999999999999999999999999998753
No 2
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.4e-48 Score=290.53 Aligned_cols=129 Identities=65% Similarity=1.219 Sum_probs=120.7
Q ss_pred CCCCChhHHHHHHHHHhcCCCCCCccCCCCCCCCceeeccchhcchhhhhhhhcCCCCCcceeeccCCCCCCHHHHHHHH
Q psy7550 3 GEGPNKNDIEVIFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQ 82 (144)
Q Consensus 3 ~~~~~~~~~~~~~~~L~~~~~N~~C~DCg~~~p~w~s~~~GiflC~~CsgiHR~lg~~iS~VkS~~ld~~w~~~~l~~m~ 82 (144)
+.++++++++++|+.|++.|+|+.|+|||+++|+|+|+|||||||++|||+||+||+|||+|||++||+.|+++||+.|+
T Consensus 16 ~~~~~k~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~ 95 (144)
T 2p57_A 16 SAEPNKTEIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQ 95 (144)
T ss_dssp --CCCHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHHH
T ss_pred ccCcCHHHHHHHHHHHhcCCCCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999449999999999
Q ss_pred hhChHHHHHHHhhcCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHHHcC
Q psy7550 83 LGGNANAVSFFNQHNCTSKDAQQKYNSRAAQLYREKLQHAAVQAMKIHG 131 (144)
Q Consensus 83 ~gGN~~~~~~~e~~~~~~~~~~~ky~~~~~~~yr~kl~~~~~~~~~~~~ 131 (144)
.+||.++|+||++++.+..++++||++++|++||++|.+++++++++++
T Consensus 96 ~~GN~~an~~~e~~g~~~~~~~~KY~s~aA~~Yr~~l~~~~~~~~~~~~ 144 (144)
T 2p57_A 96 VGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQLGSAALARHG 144 (144)
T ss_dssp HCCHHHHHHHHHHTTCCCCSHHHHHTSHHHHHHHHHHHHHHHHTCC---
T ss_pred HhCHHHHHHHHHHcCCCCCchhhccCcHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999888999999999999999999999999998875
No 3
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=2.6e-45 Score=271.73 Aligned_cols=119 Identities=39% Similarity=0.751 Sum_probs=112.0
Q ss_pred CCChhHHHHHHHHHhcCCCCCCccCCCCCCCCceeeccchhcchhhhhhhhcCCCCCcceeeccCCCCCCHHHHHHHHhh
Q psy7550 5 GPNKNDIEVIFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLG 84 (144)
Q Consensus 5 ~~~~~~~~~~~~~L~~~~~N~~C~DCg~~~p~w~s~~~GiflC~~CsgiHR~lg~~iS~VkS~~ld~~w~~~~l~~m~~g 84 (144)
.++++..+++++.|++.|+|+.|||||+++|+|+|+|||||||++|||+||+||+|||+|||++||+ |++++|+.|+.+
T Consensus 17 ~~~~~~~~~l~~~l~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~-w~~~~l~~m~~~ 95 (138)
T 2owa_A 17 FVSDKLRDNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDK-FTPIQLVRMDIG 95 (138)
T ss_dssp CBCHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSC-CCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcCcCCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCc-CCHHHHHHHHhh
Confidence 3577888999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred ChHHHHHHHhh-cCCC-CcchHHHhhHHHHHHHHHHHHHHHH
Q psy7550 85 GNANAVSFFNQ-HNCT-SKDAQQKYNSRAAQLYREKLQHAAV 124 (144)
Q Consensus 85 GN~~~~~~~e~-~~~~-~~~~~~ky~~~~~~~yr~kl~~~~~ 124 (144)
||.++|+||++ ++.. ..++++||+++++++||++|.++|+
T Consensus 96 GN~~an~~~e~~~~~~~~~~~~~kY~s~~a~~Y~~kL~~~~~ 137 (138)
T 2owa_A 96 GNGRARNYFKQVLGVNFSPKTKEYASSICGRQYKQILDSEIS 137 (138)
T ss_dssp CHHHHHHHHHHHTCTTCCGGGCHHHHSHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHcCCCCCCCHHHHHhhHHHHHHHHHHHHHHh
Confidence 99999999999 7765 4578999999999999999999864
No 4
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=100.00 E-value=4.5e-45 Score=272.07 Aligned_cols=117 Identities=45% Similarity=0.828 Sum_probs=108.1
Q ss_pred ChhHHHHHHHHHhcCCCCCCccCCCCCCCCceeeccchhcchhhhhhhhcCCCCCcceeeccCCCCCCHHHHHHHHhhCh
Q psy7550 7 NKNDIEVIFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGN 86 (144)
Q Consensus 7 ~~~~~~~~~~~L~~~~~N~~C~DCg~~~p~w~s~~~GiflC~~CsgiHR~lg~~iS~VkS~~ld~~w~~~~l~~m~~gGN 86 (144)
..++.+++|+.|++.|+|+.|||||+++|+|+|+|||||||++|||+||+||+|||+||||+||+ |+++||+.|+.+||
T Consensus 21 ~~~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~-W~~~el~~m~~~GN 99 (147)
T 3dwd_A 21 ASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDK-WKDIELEKMKAGGN 99 (147)
T ss_dssp -CHHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC---CCHHHHHHHHHCCH
T ss_pred CCHHHHHHHHHHHcCcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccC-CCHHHHHHHHHHhh
Confidence 34567889999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhhcCCC--CcchHHHhhHHHHHHHHHHHHHHHH
Q psy7550 87 ANAVSFFNQHNCT--SKDAQQKYNSRAAQLYREKLQHAAV 124 (144)
Q Consensus 87 ~~~~~~~e~~~~~--~~~~~~ky~~~~~~~yr~kl~~~~~ 124 (144)
.++|+||++++.. ..++++||++++|.+||++|+++++
T Consensus 100 ~~an~~~ea~~~~~~~~~~~~KY~s~aA~~Yr~~l~~~~e 139 (147)
T 3dwd_A 100 AKFREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAE 139 (147)
T ss_dssp HHHHHHHHTSTTCCTTCCHHHHHTSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCCCCCCCHHHhhCCHHHHHHHHHHHHHHc
Confidence 9999999998753 5689999999999999999999875
No 5
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=3.4e-45 Score=276.37 Aligned_cols=128 Identities=35% Similarity=0.642 Sum_probs=119.4
Q ss_pred hHHHHHHHHHhcC-CCCCCccCCCCCCCCceeeccchhcchhhhhhhhcCCCCCcceeeccCCCCCCHHHHHHHHhhChH
Q psy7550 9 NDIEVIFKKLRNI-PTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNA 87 (144)
Q Consensus 9 ~~~~~~~~~L~~~-~~N~~C~DCg~~~p~w~s~~~GiflC~~CsgiHR~lg~~iS~VkS~~ld~~w~~~~l~~m~~gGN~ 87 (144)
+..+++|+.|++. |+|+.|||||+++|+|+|+++|||||++|||+||+||+|||+||||+||. |++++|+.|+.+||.
T Consensus 6 a~a~~~l~~L~~~~p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~-Wt~e~l~~m~~~GN~ 84 (163)
T 3sub_A 6 AAAVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDI-FTDEQLKYIDKGGNK 84 (163)
T ss_dssp HHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCC-CCHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHhCCCCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccC-cCHHHHHHHHhhCHH
Confidence 3457788888875 89999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhcCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeeecCC
Q psy7550 88 NAVSFFNQHNCTSKDAQQKYNSRAAQLYREKLQHAAVQAMKIHGTKLFLDAM 139 (144)
Q Consensus 88 ~~~~~~e~~~~~~~~~~~ky~~~~~~~yr~kl~~~~~~~~~~~~~~~~~~~~ 139 (144)
++++||++++.....+..||++++|++||++|+++|+. .++|+.+.++++
T Consensus 85 ~an~~~e~~g~~~~~p~~KY~s~aA~~Yr~~L~~~v~~--~~~p~~~~~~~~ 134 (163)
T 3sub_A 85 KCQTYLENYGISDFIPERKYRTKAADHYRKILRSIVHN--VDPPAPLPLDEG 134 (163)
T ss_dssp HHHHHHHHTTCTTSCHHHHTTBHHHHHHHHHHHHHHTT--CCCCCCCCGGGT
T ss_pred HHHHHHHHcCCcccChhhcCCCHHHHHHHHHHHHHHcC--CCCCCCCccccc
Confidence 99999999999888888999999999999999999988 688888887654
No 6
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=100.00 E-value=3.7e-40 Score=243.15 Aligned_cols=116 Identities=33% Similarity=0.584 Sum_probs=95.6
Q ss_pred CCChhHHHHHHHHHhcCCCCCCccCCCCCCCCceeeccchhcchhhhhhhhcCCCCCcceeeccCCCCCCHHHHHHHHhh
Q psy7550 5 GPNKNDIEVIFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLG 84 (144)
Q Consensus 5 ~~~~~~~~~~~~~L~~~~~N~~C~DCg~~~p~w~s~~~GiflC~~CsgiHR~lg~~iS~VkS~~ld~~w~~~~l~~m~~g 84 (144)
..++++.+++|+.|++.|+|+.|||||+++|+|+|+|+|||||++|||+||+||+|||+||||+||+ |++++|+.|+.+
T Consensus 8 ~~~~e~~~~~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~-w~~~~l~~m~~~ 86 (134)
T 2iqj_A 8 VKDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQ-WTQEQIQCMQEM 86 (134)
T ss_dssp -----CCHHHHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSC-CCHHHHHHHHTC
T ss_pred HhHHHHHHHHHHHHHcCcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccC-CCHHHHHHHHHH
Confidence 4577888999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred ChHHHHHHHhhcCCCCcchHHHhhHHHHHHHHHHHHHH
Q psy7550 85 GNANAVSFFNQHNCTSKDAQQKYNSRAAQLYREKLQHA 122 (144)
Q Consensus 85 GN~~~~~~~e~~~~~~~~~~~ky~~~~~~~yr~kl~~~ 122 (144)
||..+|+|||++.++... .....+....|+|.||..+
T Consensus 87 GN~~an~~~e~~lp~~~~-~P~~~~~~e~fIr~KY~~k 123 (134)
T 2iqj_A 87 GNGKANRLYEAYLPETFR-RPQIDPAVEGFIRDKYEKK 123 (134)
T ss_dssp HHHHHHHHHTTTCCSSCC-CCCSHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHhcCCccCC-CCCchHHHHHHHHHHHhCC
Confidence 999999999976543210 0011233456777777653
No 7
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=4.2e-39 Score=239.33 Aligned_cols=114 Identities=36% Similarity=0.615 Sum_probs=97.7
Q ss_pred ChhHHHHHHHHHhcCCCCCCccCCCCCCCCceeeccchhcchhhhhhhhcCCCCCcceeeccCCCCCCHHHHHHHHhhCh
Q psy7550 7 NKNDIEVIFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGN 86 (144)
Q Consensus 7 ~~~~~~~~~~~L~~~~~N~~C~DCg~~~p~w~s~~~GiflC~~CsgiHR~lg~~iS~VkS~~ld~~w~~~~l~~m~~gGN 86 (144)
..+..+++|+.|++.|+|+.|||||+++|+|+|+|+|||||++|||+||.||+|||+||||+||+ |++++|+.|+.+||
T Consensus 12 ~~e~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~-w~~~~l~~m~~~GN 90 (141)
T 2crr_A 12 LNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQ-WTAEQIQCMQDMGN 90 (141)
T ss_dssp TTTCHHHHHHHHHHSGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSC-CCHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHhCccCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCC-CCHHHHHHHHHHcc
Confidence 44677899999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhhcCCCCcchHHHhhHHHHHHHHHHHHHH
Q psy7550 87 ANAVSFFNQHNCTSKDAQQKYNSRAAQLYREKLQHA 122 (144)
Q Consensus 87 ~~~~~~~e~~~~~~~~~~~ky~~~~~~~yr~kl~~~ 122 (144)
..+|+||+++..+... +.........|+|.||..+
T Consensus 91 ~~an~~~e~~lp~~~~-~P~~~~~~e~fIr~KY~~k 125 (141)
T 2crr_A 91 TKARLLYEANLPENFR-RPQTDQAVEFFIRDKYEKK 125 (141)
T ss_dssp HHHHHHGGGSCCTTCC-CCCSHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHhcCCcccC-CCCchHHHHHHHHHHHhcC
Confidence 9999999987544210 0011234457778887764
No 8
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=100.00 E-value=1.4e-37 Score=230.93 Aligned_cols=89 Identities=27% Similarity=0.555 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHhcCCCCCCccCCCCCCCCceeeccchhcchhhhhhhhcCCCCCcceeeccCCCCCCHHHHHHHHhhChH
Q psy7550 8 KNDIEVIFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNA 87 (144)
Q Consensus 8 ~~~~~~~~~~L~~~~~N~~C~DCg~~~p~w~s~~~GiflC~~CsgiHR~lg~~iS~VkS~~ld~~w~~~~l~~m~~gGN~ 87 (144)
.+..+++|+.|++.|+|+.|||||+++|+|+|+|+|||||++|||+||+||+| |+||||+||+ |++++|+.|+.+||.
T Consensus 9 ~e~~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~-s~VrSl~ld~-w~~~~l~~m~~~GN~ 86 (140)
T 2olm_A 9 EEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTT-FTQQEIEFLQKHGNE 86 (140)
T ss_dssp HHHHHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSC-CCEEETTTCC-CCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHhcCcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCc-ceeeecCCCC-CCHHHHHHHHHhccH
Confidence 45677899999999999999999999999999999999999999999999996 9999999999 999999999999999
Q ss_pred HHHHHHhhcCC
Q psy7550 88 NAVSFFNQHNC 98 (144)
Q Consensus 88 ~~~~~~e~~~~ 98 (144)
.+|+|||++..
T Consensus 87 ~an~~~e~~~~ 97 (140)
T 2olm_A 87 VCKQIWLGLFD 97 (140)
T ss_dssp HHHHHHTTTCC
T ss_pred HHHHHHHhhCC
Confidence 99999998653
No 9
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=100.00 E-value=8.5e-36 Score=244.97 Aligned_cols=116 Identities=46% Similarity=0.841 Sum_probs=106.8
Q ss_pred ChhHHHHHHHHHhcCCCCCCccCCCCCCCCceeeccchhcchhhhhhhhcCCCCCcceeeccCCCCCCHHHHHHHHhhCh
Q psy7550 7 NKNDIEVIFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGN 86 (144)
Q Consensus 7 ~~~~~~~~~~~L~~~~~N~~C~DCg~~~p~w~s~~~GiflC~~CsgiHR~lg~~iS~VkS~~ld~~w~~~~l~~m~~gGN 86 (144)
..+..+++++.|++.|+|+.|||||+++|+|+|+|+|||||++|||+||+||+|||+|||++||+ |++++|+.|+.+||
T Consensus 20 ~~~~~~~~~~~~~~~~~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~-~~~~~~~~~~~~gN 98 (329)
T 3o47_A 20 ASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDK-WKDIELEKMKAGGN 98 (329)
T ss_dssp ---CHHHHHHHHHHSTTTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCC-CCHHHHHHHHHCCH
T ss_pred CCHHHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccC-CCHHHHHHHHHhCc
Confidence 45567889999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhhcCCC--CcchHHHhhHHHHHHHHHHHHHHH
Q psy7550 87 ANAVSFFNQHNCT--SKDAQQKYNSRAAQLYREKLQHAA 123 (144)
Q Consensus 87 ~~~~~~~e~~~~~--~~~~~~ky~~~~~~~yr~kl~~~~ 123 (144)
.++|+||++++.. ...+.++|.+.++..|+.++..++
T Consensus 99 ~~~n~~~e~~~~~~~~~~i~~~y~s~~A~lYr~kl~~~~ 137 (329)
T 3o47_A 99 AKFREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALA 137 (329)
T ss_dssp HHHHHHHHTCSSCCTTCCHHHHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCCCccccccchHHHHHhhhccccc
Confidence 9999999998654 457889999999999999998754
No 10
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=100.00 E-value=2.1e-34 Score=240.55 Aligned_cols=92 Identities=33% Similarity=0.672 Sum_probs=83.9
Q ss_pred CCChhHHHHHHHHHhcCCCCCCccCCCCCCCCceeeccchhcchhhhhhhhcCCCCCcceeeccCCCCCCHHHHHHHHhh
Q psy7550 5 GPNKNDIEVIFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLG 84 (144)
Q Consensus 5 ~~~~~~~~~~~~~L~~~~~N~~C~DCg~~~p~w~s~~~GiflC~~CsgiHR~lg~~iS~VkS~~ld~~w~~~~l~~m~~g 84 (144)
..+++..+++|+.|++.|+|+.|+|||+++|+|+|+|+|||||++||||||+||+|||+||||+||+ |+.++|+.|+.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~-w~~~~~~~~~~~ 104 (368)
T 3jue_A 26 GREPGGVGHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDS-WEPELVKLMCEL 104 (368)
T ss_dssp ------CCCHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSC-CCHHHHHHHHHS
T ss_pred hhhhhHHHHHHHHHHcCCCcCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeeccc-ccHHHHHHHHHH
Confidence 3456667789999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred ChHHHHHHHhhcC
Q psy7550 85 GNANAVSFFNQHN 97 (144)
Q Consensus 85 GN~~~~~~~e~~~ 97 (144)
||..+|+|||...
T Consensus 105 gn~~~n~~~e~~~ 117 (368)
T 3jue_A 105 GNVIINQIYEARV 117 (368)
T ss_dssp CHHHHHHHHTTTT
T ss_pred ccHHHHHHHHhhc
Confidence 9999999999864
No 11
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.98 E-value=8e-33 Score=233.15 Aligned_cols=114 Identities=31% Similarity=0.536 Sum_probs=95.0
Q ss_pred ChhHHHHHHHHHhcCCCCCCccCCCCCCCCceeeccchhcchhhhhhhhcCCCCCcceeeccCCCCCCHHHHHHHHhhCh
Q psy7550 7 NKNDIEVIFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGN 86 (144)
Q Consensus 7 ~~~~~~~~~~~L~~~~~N~~C~DCg~~~p~w~s~~~GiflC~~CsgiHR~lg~~iS~VkS~~ld~~w~~~~l~~m~~gGN 86 (144)
..++.+++|+.|++.|+|+.|||||+++|+|||+|+|||||++|||+||+| +|||+||||+||+ |++++|+.|+.+||
T Consensus 17 q~~~~~~~l~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l-~his~v~s~~ld~-w~~~~~~~~~~~gN 94 (386)
T 3lju_X 17 QGKERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDA-WEEAQVEFMASHGN 94 (386)
T ss_dssp HHHHHHHHHHHHTTSGGGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTC-TTTCCEEETTTSC-CCHHHHHHHHHSSH
T ss_pred hhhHHHHHHHHHhcCcCCCcCccCCCCCCCeEEecccEEEhhhhchHhhCC-CccceeeeecccC-CCHHHHHHHHHhcc
Confidence 456778999999999999999999999999999999999999999999999 9999999999999 99999999999999
Q ss_pred HHHHHHHhhcCCCC--cchHHHhhHHHHHHHHHHHHHH
Q psy7550 87 ANAVSFFNQHNCTS--KDAQQKYNSRAAQLYREKLQHA 122 (144)
Q Consensus 87 ~~~~~~~e~~~~~~--~~~~~ky~~~~~~~yr~kl~~~ 122 (144)
..+|+|||++..+. .+....-......++|.||...
T Consensus 95 ~~~~~~~e~~~~~~~~~p~~~~~~~~~e~fIr~KY~~~ 132 (386)
T 3lju_X 95 DAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQ 132 (386)
T ss_dssp HHHHHHHTTTCCTTSCCCCTTSCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHhccCCccCCCCCCccchHHHHHEHHhhhCCC
Confidence 99999999875432 1100011122345677776654
No 12
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.97 E-value=1.2e-30 Score=210.92 Aligned_cols=90 Identities=32% Similarity=0.564 Sum_probs=84.2
Q ss_pred ChhHHHHHHHHHhcCCCCCCccCCCCCCCCceeeccchhcchhhhhhhhcCCCCCcceeeccCCCCCCHHHHHHHHhhCh
Q psy7550 7 NKNDIEVIFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGN 86 (144)
Q Consensus 7 ~~~~~~~~~~~L~~~~~N~~C~DCg~~~p~w~s~~~GiflC~~CsgiHR~lg~~iS~VkS~~ld~~w~~~~l~~m~~gGN 86 (144)
+.+..+++++.|++.|+|+.|+|||+++|+|+|+|+|||+|++|||+||.||+|||+|||++||. |+.+++..|..+||
T Consensus 25 ~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~-w~~~~l~~~~~~GN 103 (301)
T 2b0o_E 25 PHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDL-LGPSELLLALNMGN 103 (301)
T ss_dssp --CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSC-CCHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHhcCCCCCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCC-CCHHHHHHHHHcCC
Confidence 45667788999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhhcC
Q psy7550 87 ANAVSFFNQHN 97 (144)
Q Consensus 87 ~~~~~~~e~~~ 97 (144)
..+|++||..-
T Consensus 104 ~~~n~i~E~~l 114 (301)
T 2b0o_E 104 TSFNEVMEAQL 114 (301)
T ss_dssp HHHHHHHTTTC
T ss_pred HHHHHHHHHhh
Confidence 99999999643
No 13
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.96 E-value=2.3e-30 Score=206.83 Aligned_cols=87 Identities=33% Similarity=0.566 Sum_probs=83.5
Q ss_pred HHHHHHHHHhcCCCCCCccCCCCCCCCceeeccchhcchhhhhhhhcCCCCCcceeeccCCCCCCHHHHHHHHhhChHHH
Q psy7550 10 DIEVIFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANA 89 (144)
Q Consensus 10 ~~~~~~~~L~~~~~N~~C~DCg~~~p~w~s~~~GiflC~~CsgiHR~lg~~iS~VkS~~ld~~w~~~~l~~m~~gGN~~~ 89 (144)
..+++++.|++.|+|+.|+|||+++|+|+|+|||+|||++|||+||+||+|||+|||++||. |+.+++..|..+||..+
T Consensus 3 ~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~-~~~~~l~~~~~~GN~~~ 81 (278)
T 1dcq_A 3 LTKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDV-LGTSELLLAKNIGNAGF 81 (278)
T ss_dssp CHHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSC-CCGGGGHHHHHSCHHHH
T ss_pred hHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCC-CCHHHHHHHHHcCcHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHhhcC
Q psy7550 90 VSFFNQHN 97 (144)
Q Consensus 90 ~~~~e~~~ 97 (144)
|++|+..-
T Consensus 82 n~i~e~~l 89 (278)
T 1dcq_A 82 NEIMECCL 89 (278)
T ss_dssp HHHHTTTC
T ss_pred HHHHHhhC
Confidence 99999654
No 14
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.96 E-value=3.7e-30 Score=219.69 Aligned_cols=90 Identities=32% Similarity=0.564 Sum_probs=85.0
Q ss_pred ChhHHHHHHHHHhcCCCCCCccCCCCCCCCceeeccchhcchhhhhhhhcCCCCCcceeeccCCCCCCHHHHHHHHhhCh
Q psy7550 7 NKNDIEVIFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGN 86 (144)
Q Consensus 7 ~~~~~~~~~~~L~~~~~N~~C~DCg~~~p~w~s~~~GiflC~~CsgiHR~lg~~iS~VkS~~ld~~w~~~~l~~m~~gGN 86 (144)
.++..+++++.|++.|+|+.|+|||+++|+|+|+|+|||+|++|||+||+||+|||+|||++||. |+.+++..|+.+||
T Consensus 6 ~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~-w~~~~~~l~~~~GN 84 (497)
T 3lvq_E 6 PHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDL-LGPSELLLALNMGN 84 (497)
T ss_dssp --CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSC-CCGGGGTTTTTCCH
T ss_pred hHHHHHHHHHHHhcCCCCCcccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccCC-CCHHHHHHHHHHhh
Confidence 45667899999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhhcC
Q psy7550 87 ANAVSFFNQHN 97 (144)
Q Consensus 87 ~~~~~~~e~~~ 97 (144)
..+|.+|+..-
T Consensus 85 ~~an~i~E~~l 95 (497)
T 3lvq_E 85 TSFNEVMEAQL 95 (497)
T ss_dssp HHHHHHHTTTC
T ss_pred HHHHHHHHhhc
Confidence 99999999654
No 15
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=93.40 E-value=0.06 Score=32.07 Aligned_cols=39 Identities=28% Similarity=0.761 Sum_probs=32.8
Q ss_pred CCCCCccCCCCC-CCCceeeccchhcchhhhhhhhcCCCC
Q psy7550 22 PTNKECFDCNAK-NPTWSSVTYGVFICIDCSAVHRGLGVH 60 (144)
Q Consensus 22 ~~N~~C~DCg~~-~p~w~s~~~GiflC~~CsgiHR~lg~~ 60 (144)
.+.+.|++|++. -|.|-.-..|..||-.|.-.++..|++
T Consensus 2 ~~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~ 41 (46)
T 1gnf_A 2 SEARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQN 41 (46)
T ss_dssp CCSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCSC
T ss_pred CCCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcCCC
Confidence 357899999996 579999999999999998887776654
No 16
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=91.37 E-value=0.12 Score=32.71 Aligned_cols=40 Identities=15% Similarity=0.424 Sum_probs=33.5
Q ss_pred cCCCCCCccCCCCC-CCCceeeccchhcchhhhhhhhcCCC
Q psy7550 20 NIPTNKECFDCNAK-NPTWSSVTYGVFICIDCSAVHRGLGV 59 (144)
Q Consensus 20 ~~~~N~~C~DCg~~-~p~w~s~~~GiflC~~CsgiHR~lg~ 59 (144)
+......|++|+.. -|.|=.-..|-.||-.|.-..+..|+
T Consensus 3 ~~~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~ 43 (63)
T 3dfx_A 3 ARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 43 (63)
T ss_dssp CCCTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSS
T ss_pred CCCCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCC
Confidence 35578899999996 58999999999999999887776655
No 17
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=90.39 E-value=0.16 Score=29.78 Aligned_cols=35 Identities=26% Similarity=0.625 Sum_probs=29.2
Q ss_pred CCccCCCCC-CCCceeeccchhcchhhhhhhhcCCC
Q psy7550 25 KECFDCNAK-NPTWSSVTYGVFICIDCSAVHRGLGV 59 (144)
Q Consensus 25 ~~C~DCg~~-~p~w~s~~~GiflC~~CsgiHR~lg~ 59 (144)
+.|++|+.. -|.|-.-..|-.||-.|.-..+..|+
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~ 37 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 37 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSS
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHHhCC
Confidence 579999996 57999999999999999877666544
No 18
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=89.22 E-value=0.49 Score=36.35 Aligned_cols=47 Identities=23% Similarity=0.533 Sum_probs=35.6
Q ss_pred CCCCCCccCCCCCCCCceeeccchhcchhhhhhhhcCCCCCcceeeccCCCCCCHHHHHHHHhh
Q psy7550 21 IPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLG 84 (144)
Q Consensus 21 ~~~N~~C~DCg~~~p~w~s~~~GiflC~~CsgiHR~lg~~iS~VkS~~ld~~w~~~~l~~m~~g 84 (144)
.|.-..|+.||.++..+.|...|.++|..|...+ . .+.+++..|+..
T Consensus 147 ~p~l~~C~~cg~~~~~~fs~~~Gg~~c~~~~~~~----------------~-l~~~~l~~l~~l 193 (244)
T 1u5k_A 147 IPQTARCARCGAPDPEHPDPLGGQLLCSKCAALP----------------P-YPPAVLDFLRHA 193 (244)
T ss_dssp CCCCSBCTTTCCBSCCEECTTTSSEECTTTCSSC----------------C-CCHHHHHHHHHT
T ss_pred CCCcCccccCCCCCCCcEecccCEEECcccCCCC----------------C-CCHHHHHHHHHH
Confidence 3566799999999667889999999999985321 2 667777777543
No 19
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=88.00 E-value=0.32 Score=30.99 Aligned_cols=39 Identities=23% Similarity=0.520 Sum_probs=32.6
Q ss_pred CCCCCccCCCCC-CCCceeeccchhcchhhhhhhhcCCCC
Q psy7550 22 PTNKECFDCNAK-NPTWSSVTYGVFICIDCSAVHRGLGVH 60 (144)
Q Consensus 22 ~~N~~C~DCg~~-~p~w~s~~~GiflC~~CsgiHR~lg~~ 60 (144)
.+...|++|+.. -|.|-.-..|-.||-.|.-..+..|.+
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~~~ 46 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVV 46 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHCSC
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcCCC
Confidence 467899999996 589999999999999998777765553
No 20
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=84.95 E-value=0.44 Score=33.40 Aligned_cols=36 Identities=31% Similarity=0.809 Sum_probs=29.3
Q ss_pred CCCccCCCCC-CCCceeeccchhcchhhhhhhhcCCC
Q psy7550 24 NKECFDCNAK-NPTWSSVTYGVFICIDCSAVHRGLGV 59 (144)
Q Consensus 24 N~~C~DCg~~-~p~w~s~~~GiflC~~CsgiHR~lg~ 59 (144)
.+.|++||+. -|.|-.-..|-+||..|.-.++..|.
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~ 41 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQ 41 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSS
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhhccc
Confidence 5789999996 68999989999999999876664444
No 21
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=81.93 E-value=0.46 Score=30.68 Aligned_cols=38 Identities=18% Similarity=0.487 Sum_probs=29.6
Q ss_pred CCCCCccCCCCC-CCCcee--eccchhcchhhhhhhhcCCCC
Q psy7550 22 PTNKECFDCNAK-NPTWSS--VTYGVFICIDCSAVHRGLGVH 60 (144)
Q Consensus 22 ~~N~~C~DCg~~-~p~w~s--~~~GiflC~~CsgiHR~lg~~ 60 (144)
.....|++|+.. -|.|-. -.-| .||-.|.-..+..|++
T Consensus 6 ~~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~~~ 46 (71)
T 2kae_A 6 KKSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYNKT 46 (71)
T ss_dssp --CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHHSC
T ss_pred CCCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHhCCC
Confidence 356799999996 589998 6777 8999998877776654
No 22
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=77.11 E-value=1.1 Score=32.83 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=23.9
Q ss_pred CCCCCCccCCCCCCC-Cceeeccchhcchhhhhhh
Q psy7550 21 IPTNKECFDCNAKNP-TWSSVTYGVFICIDCSAVH 54 (144)
Q Consensus 21 ~~~N~~C~DCg~~~p-~w~s~~~GiflC~~CsgiH 54 (144)
.+.-..|.+||.+=| .-.-.--++-.|+.|...+
T Consensus 108 ~g~yg~C~~Cg~~Ip~~Rl~a~P~a~~Ci~Cq~~~ 142 (151)
T 1tjl_A 108 DEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLA 142 (151)
T ss_dssp TTCCSBCSSSSCBCCHHHHHHCTTCCSCHHHHHHH
T ss_pred CCCCceeCCCCCcchHHHHhcCCCcchhHHHHHHH
Confidence 356789999999754 1222334778999999865
No 23
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=73.30 E-value=0.52 Score=32.85 Aligned_cols=33 Identities=30% Similarity=0.629 Sum_probs=23.1
Q ss_pred CCCCccCCCCCCC-Cceeeccchhcchhhhhhhh
Q psy7550 23 TNKECFDCNAKNP-TWSSVTYGVFICIDCSAVHR 55 (144)
Q Consensus 23 ~N~~C~DCg~~~p-~w~s~~~GiflC~~CsgiHR 55 (144)
.-..|.+||.+=| .-.-.--++..|+.|...+-
T Consensus 55 syG~C~~CGe~Ip~~RL~A~P~a~~Cv~Cq~~~E 88 (108)
T 2kgo_A 55 SLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 88 (108)
T ss_dssp CCSBCTTTCCBCCHHHHHHSTTCCSCHHHHHHHH
T ss_pred cCceecccCCcccHHHHhcCCCccccHHHHHHHH
Confidence 4579999999744 22223346789999998653
No 24
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=72.61 E-value=2 Score=28.65 Aligned_cols=33 Identities=27% Similarity=0.658 Sum_probs=26.5
Q ss_pred CCCCCCccCCCCCCCCceeeccchhcchhhhhhhhc
Q psy7550 21 IPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRG 56 (144)
Q Consensus 21 ~~~N~~C~DCg~~~p~w~s~~~GiflC~~CsgiHR~ 56 (144)
.+.+..|.-||.+.. ...||++.|..|++..|-
T Consensus 4 ~~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 36 (89)
T 2ebl_A 4 GSSGIECVVCGDKSS---GKHYGQFTCEGCKSFFKR 36 (89)
T ss_dssp CCSSCBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCCCCCcEeCCCCc---ceEeCchhhHHhhhhhhe
Confidence 356778999997643 568999999999998763
No 25
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=71.56 E-value=2.7 Score=29.29 Aligned_cols=39 Identities=15% Similarity=0.468 Sum_probs=32.7
Q ss_pred CCCCCccCCCCC-CCCceeeccchhcchhhhhhhhcCCCC
Q psy7550 22 PTNKECFDCNAK-NPTWSSVTYGVFICIDCSAVHRGLGVH 60 (144)
Q Consensus 22 ~~N~~C~DCg~~-~p~w~s~~~GiflC~~CsgiHR~lg~~ 60 (144)
.....|++|+.. -|.|-.-+.|-.||-.|.-..+..|.+
T Consensus 57 ~~~~~C~~C~t~~tp~WRr~~~g~~lCNaCgl~~~~~~~~ 96 (115)
T 4hc9_A 57 RAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNIN 96 (115)
T ss_dssp CTTCCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSC
T ss_pred cccccCCCcCCCCcceeEECCCCCCcchHHHHHHHHhCCC
Confidence 457899999996 589999999999999998877666554
No 26
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=71.33 E-value=2.1 Score=28.12 Aligned_cols=32 Identities=31% Similarity=0.668 Sum_probs=25.8
Q ss_pred CCCCCccCCCCCCCCceeeccchhcchhhhhhhhc
Q psy7550 22 PTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRG 56 (144)
Q Consensus 22 ~~N~~C~DCg~~~p~w~s~~~GiflC~~CsgiHR~ 56 (144)
++...|.-||.+. ....||++.|..|++..|-
T Consensus 2 ~~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 33 (84)
T 1hcq_A 2 KETRYCAVCNDYA---SGYHYGVWSCEGCKAFFKR 33 (84)
T ss_dssp CCCCBCTTTCSBC---CEEETTEEECHHHHHHHHH
T ss_pred CCCCcCcEECCCC---CCeeeCccchHHhhhhhhh
Confidence 3567899999764 3579999999999998763
No 27
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=71.15 E-value=1.9 Score=28.66 Aligned_cols=30 Identities=23% Similarity=0.707 Sum_probs=24.0
Q ss_pred CCCCccCCCCCCCCceeeccchhcchhhhhhhh
Q psy7550 23 TNKECFDCNAKNPTWSSVTYGVFICIDCSAVHR 55 (144)
Q Consensus 23 ~N~~C~DCg~~~p~w~s~~~GiflC~~CsgiHR 55 (144)
+++.|.-||.+.. ...||++.|..|++.-|
T Consensus 1 g~~~C~VCg~~a~---g~hyGv~sC~~Ck~FFR 30 (90)
T 3g9m_A 1 GSHMCLVCSDEAS---GCHYGVLTCGSCKVFFK 30 (90)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCcCccCCCcCc---ccccCCccchhHhHHhh
Confidence 4788999997643 46899999999999765
No 28
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=68.15 E-value=3.3 Score=26.72 Aligned_cols=40 Identities=18% Similarity=0.381 Sum_probs=30.8
Q ss_pred HHHHHHHH-hcCCCCCCccCCCCCCCCceeeccchhcchhhhh
Q psy7550 11 IEVIFKKL-RNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSA 52 (144)
Q Consensus 11 ~~~~~~~L-~~~~~N~~C~DCg~~~p~w~s~~~GiflC~~Csg 52 (144)
+++.++++ .+.+....|.-||.....+.. .||..|..|.-
T Consensus 13 lRK~vkkie~~q~~ky~C~fCgk~~vkR~a--~GIW~C~~C~~ 53 (73)
T 1ffk_W 13 IRVRVRDVEIKHKKKYKCPVCGFPKLKRAS--TSIWVCGHCGY 53 (73)
T ss_pred HHHHHHHHHHhcccCccCCCCCCceeEEEE--eEEEECCCCCc
Confidence 45556665 778889999999987666664 59999999954
No 29
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=67.18 E-value=2.3 Score=29.15 Aligned_cols=33 Identities=27% Similarity=0.746 Sum_probs=25.5
Q ss_pred CCCCCCccCCCCCCCCceeeccchhcchhhhhhhhc
Q psy7550 21 IPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRG 56 (144)
Q Consensus 21 ~~~N~~C~DCg~~~p~w~s~~~GiflC~~CsgiHR~ 56 (144)
.+.+..|.-||.+. ....||++.|..|++..|-
T Consensus 4 ~~~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 36 (105)
T 1r4i_A 4 FPPQKTCLICGDEA---SGAHYGALTCGSCKVFFKR 36 (105)
T ss_dssp --CCCBCSSSCSBE---EEEETTEEEEHHHHHHHHH
T ss_pred CCCCCCCcEeCCCC---CceEeCCcchhhhhhhhce
Confidence 35678899999743 3678999999999998763
No 30
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=66.78 E-value=1.4 Score=30.72 Aligned_cols=31 Identities=16% Similarity=0.380 Sum_probs=23.7
Q ss_pred CCCCccCCCCCCCC-ceeeccchhcchhhhhh
Q psy7550 23 TNKECFDCNAKNPT-WSSVTYGVFICIDCSAV 53 (144)
Q Consensus 23 ~N~~C~DCg~~~p~-w~s~~~GiflC~~Csgi 53 (144)
+.-.|.+||...-. |..-+|++-||..|...
T Consensus 4 ~~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~ 35 (111)
T 1d4u_A 4 DYVICEECGKEFMDSYLMDHFDLPTCDDCRDA 35 (111)
T ss_dssp CCEECTTTCCEESCSSSTTTTSCCCCTTTCSS
T ss_pred CCCccccCCChhhHHHHHHhCCeeechhhccc
Confidence 45679999986433 33558999999999864
No 31
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=66.38 E-value=3.3 Score=28.95 Aligned_cols=31 Identities=23% Similarity=0.640 Sum_probs=25.5
Q ss_pred CCCCccCCCCCCCCceeeccchhcchhhhhhhhc
Q psy7550 23 TNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRG 56 (144)
Q Consensus 23 ~N~~C~DCg~~~p~w~s~~~GiflC~~CsgiHR~ 56 (144)
.+..|.-||.+. ....||++.|..|++..|-
T Consensus 7 ~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 37 (119)
T 2han_B 7 QEELCLVCGDRA---SGYHYNALTCEGCKGFFRR 37 (119)
T ss_dssp CSCBCTTTCSBC---CEEETTEEECHHHHHHHHH
T ss_pred CCCcCeEeCCcC---CcceECchhHHhhHHhhhh
Confidence 467899999764 3679999999999997763
No 32
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=66.19 E-value=2.4 Score=28.91 Aligned_cols=29 Identities=24% Similarity=0.621 Sum_probs=23.3
Q ss_pred CCccCCCCCCCCceeeccchhcchhhhhhhhc
Q psy7550 25 KECFDCNAKNPTWSSVTYGVFICIDCSAVHRG 56 (144)
Q Consensus 25 ~~C~DCg~~~p~w~s~~~GiflC~~CsgiHR~ 56 (144)
..|.-||.+. ....||++.|..|++..|-
T Consensus 2 ~~C~VCgd~a---~g~hyGv~sC~aCk~FFRR 30 (103)
T 2nll_B 2 ELCVVCGDKA---TGYHYRCITCEGCKGFFRR 30 (103)
T ss_dssp CBCTTTCSBC---CSEETTEECCHHHHHHHHH
T ss_pred CCCeEeCCcC---cCeecCcccHHHhhhhhee
Confidence 5788999754 3568999999999997763
No 33
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=65.78 E-value=3 Score=27.91 Aligned_cols=31 Identities=23% Similarity=0.663 Sum_probs=24.8
Q ss_pred CCCCccCCCCCCCCceeeccchhcchhhhhhhhc
Q psy7550 23 TNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRG 56 (144)
Q Consensus 23 ~N~~C~DCg~~~p~w~s~~~GiflC~~CsgiHR~ 56 (144)
....|.-||.+.. ...||++.|..|++..|-
T Consensus 9 ~~~~C~VCgd~a~---g~hyGv~sC~aCk~FFRR 39 (93)
T 2han_A 9 SKHLCSICGDRAS---GKHYGVYSCEGCKGFFKR 39 (93)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCCCcEeCCCCc---CeecCcchhHHHHHHHHh
Confidence 4678999997643 579999999999998753
No 34
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=65.70 E-value=1.8 Score=30.18 Aligned_cols=33 Identities=24% Similarity=0.577 Sum_probs=23.7
Q ss_pred cCCCCCCccCCCCCCCCceeeccchhcchhhhhhhh
Q psy7550 20 NIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHR 55 (144)
Q Consensus 20 ~~~~N~~C~DCg~~~p~w~s~~~GiflC~~CsgiHR 55 (144)
+.+.+..|.-||.+. ....||++.|..|++..|
T Consensus 5 ~~~~~~~C~VCgd~a---~G~HyGv~sC~aCk~FFR 37 (113)
T 2a66_A 5 DEDLEELCPVCGDKV---SGYHYGLLTCESCKGFFK 37 (113)
T ss_dssp -----CBCTTTCCBE---EEEETTEEEEHHHHHHHH
T ss_pred CCCCCCCCcEeCCCC---cceeeCcccHHHHHHHHh
Confidence 345678899999753 367999999999999775
No 35
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=61.35 E-value=3.5 Score=27.15 Aligned_cols=29 Identities=38% Similarity=0.834 Sum_probs=23.0
Q ss_pred CCccCCCCCCCCceeeccchhcchhhhhhhhc
Q psy7550 25 KECFDCNAKNPTWSSVTYGVFICIDCSAVHRG 56 (144)
Q Consensus 25 ~~C~DCg~~~p~w~s~~~GiflC~~CsgiHR~ 56 (144)
+.|.-||.+.. ...||++.|..|++..|-
T Consensus 5 ~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 33 (86)
T 1dsz_A 5 KPCFVCQDKSS---GYHYGVSACEGCKGFFRR 33 (86)
T ss_dssp -CCTTTCSCCC---SEETTEECCHHHHHHHHH
T ss_pred CCCcEECCCcc---ceeeCchhHHHHHHHHHH
Confidence 56999997553 468999999999998763
No 36
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=61.19 E-value=4.7 Score=26.71 Aligned_cols=27 Identities=26% Similarity=0.682 Sum_probs=22.1
Q ss_pred CccCCCCCCCCceeeccchhcchhhhhhhh
Q psy7550 26 ECFDCNAKNPTWSSVTYGVFICIDCSAVHR 55 (144)
Q Consensus 26 ~C~DCg~~~p~w~s~~~GiflC~~CsgiHR 55 (144)
.|.-||.+.. ...||++.|..|++..|
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFR 28 (89)
T 1cit_A 2 RCAVCGDNAS---CQHYGVRTCEGCKGFFK 28 (89)
T ss_dssp CCSSSCCCCC---EEETTEEECHHHHHHHH
T ss_pred CCeEeCCCCc---ceEeCccchhhhhhhce
Confidence 5888987543 57899999999999775
No 37
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=60.08 E-value=3.8 Score=27.48 Aligned_cols=32 Identities=28% Similarity=0.539 Sum_probs=24.0
Q ss_pred CCCCCccCCCCCCCCceeeccchhcchhhhhhhhc
Q psy7550 22 PTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRG 56 (144)
Q Consensus 22 ~~N~~C~DCg~~~p~w~s~~~GiflC~~CsgiHR~ 56 (144)
+....|.-||.+. ....||++.|..|++..|-
T Consensus 5 ~~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 36 (94)
T 1a6y_A 5 GMVLLCKVCGDVA---SGFHYGVLACEGCKGFFRR 36 (94)
T ss_dssp ---CBCTTTSSBC---CEEETTEEECHHHHHHHHH
T ss_pred CCCCcCcEeCCCC---cceEeCccchhhhhhehhe
Confidence 3456899999754 3578999999999998763
No 38
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=59.92 E-value=3.5 Score=27.96 Aligned_cols=30 Identities=23% Similarity=0.688 Sum_probs=23.0
Q ss_pred CCCccCCCCCCCCceeeccchhcchhhhhhhhc
Q psy7550 24 NKECFDCNAKNPTWSSVTYGVFICIDCSAVHRG 56 (144)
Q Consensus 24 N~~C~DCg~~~p~w~s~~~GiflC~~CsgiHR~ 56 (144)
...|.-||.+.. ...||++.|..|++..|-
T Consensus 3 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 32 (99)
T 1ynw_B 3 KHICAICGDRSS---GKHYGVYSCEGCKGFFKR 32 (99)
T ss_dssp --CBTTTBSCCC---BCCTTSCBCSHHHHHHHH
T ss_pred CCCCceeCCCCc---ceeeCccchHHHHHHHHh
Confidence 457999997643 568999999999997753
No 39
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=59.71 E-value=3.5 Score=28.46 Aligned_cols=31 Identities=16% Similarity=0.518 Sum_probs=23.9
Q ss_pred CCCCccCCCCCCCCceeeccchhcchhhhhhhhc
Q psy7550 23 TNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRG 56 (144)
Q Consensus 23 ~N~~C~DCg~~~p~w~s~~~GiflC~~CsgiHR~ 56 (144)
....|.-||.+.. ...||++.|..|++..|-
T Consensus 5 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 35 (110)
T 1kb2_A 5 VPRICGVCGDRAT---GFHFNAMTCEGCKGFFRR 35 (110)
T ss_dssp --CBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred cCCCCcEeCCCCC---ceEeCchhHhhhhhhhee
Confidence 3567999997643 468999999999998763
No 40
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=56.72 E-value=3.1 Score=28.15 Aligned_cols=30 Identities=30% Similarity=0.662 Sum_probs=24.3
Q ss_pred CCCccCCCCCCCCceeeccchhcchhhhhhhhc
Q psy7550 24 NKECFDCNAKNPTWSSVTYGVFICIDCSAVHRG 56 (144)
Q Consensus 24 N~~C~DCg~~~p~w~s~~~GiflC~~CsgiHR~ 56 (144)
...|.-||.+. ....||++.|..|++..|-
T Consensus 4 ~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 33 (98)
T 1lo1_A 4 KRLCLVCGDIA---SGYHYGVASCEACKAFFKR 33 (98)
T ss_dssp CCEETTTTEEC---SEESSSSEECHHHHHHHHH
T ss_pred CCCCcEeCCCC---cCeeeCccchhhhhhhhee
Confidence 46799999754 3568999999999998763
No 41
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=56.02 E-value=6.3 Score=32.75 Aligned_cols=31 Identities=32% Similarity=0.644 Sum_probs=24.2
Q ss_pred CCCCCccCCCCCCCCceeeccchhcchhhhhhhh
Q psy7550 22 PTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHR 55 (144)
Q Consensus 22 ~~N~~C~DCg~~~p~w~s~~~GiflC~~CsgiHR 55 (144)
..+..|.-||.+... ..||+..|..|++.-|
T Consensus 48 ~~~~~C~vC~~~~~g---~hygv~~C~~C~~FFr 78 (419)
T 3dzy_D 48 LMAIECRVCGDKASG---FHYGVHACEGCKGFFR 78 (419)
T ss_dssp --CCCCSSSCSCCCS---BCSSSBCCHHHHHHHH
T ss_pred CCCCcCeECCCcCCC---CccCcccchhhhHHHc
Confidence 347789999987653 5899999999999764
No 42
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=55.92 E-value=2.9 Score=27.55 Aligned_cols=31 Identities=26% Similarity=0.693 Sum_probs=24.7
Q ss_pred CCCCccCCCCCCCCceeeccchhcchhhhhhhhc
Q psy7550 23 TNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRG 56 (144)
Q Consensus 23 ~N~~C~DCg~~~p~w~s~~~GiflC~~CsgiHR~ 56 (144)
.+..|.-||.+.. ...||++.|..|++..|-
T Consensus 4 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 34 (85)
T 1dsz_B 4 TKHICAICGDRSS---GKHYGVYSCEGCKGFFKR 34 (85)
T ss_dssp CCEECTTTCCEES---SEETTEECCHHHHHHHHH
T ss_pred CCCCCCEeCCCCC---ceeeCccchHHHHHHHHH
Confidence 4568999997543 468999999999997763
No 43
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=54.77 E-value=5.2 Score=27.93 Aligned_cols=34 Identities=24% Similarity=0.614 Sum_probs=23.5
Q ss_pred hcCCCCCCccCCCCCCCCceeeccchhcchhhhhhhh
Q psy7550 19 RNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHR 55 (144)
Q Consensus 19 ~~~~~N~~C~DCg~~~p~w~s~~~GiflC~~CsgiHR 55 (144)
.+.+..+.|.-||.+.. ...||++.|..|++.-|
T Consensus 24 ~~~~~~~~C~VCgd~a~---G~HyGv~sC~aCk~FFR 57 (117)
T 4hn5_A 24 ASNAPPKLCLVCSDEAS---GCHYGVLTCGSCKVFFK 57 (117)
T ss_dssp ------CBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCCCCCcCCcCCCcCc---ccccCCcccchhhhhhh
Confidence 34456778999998643 46899999999999765
No 44
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Probab=53.52 E-value=5.6 Score=25.68 Aligned_cols=28 Identities=25% Similarity=0.579 Sum_probs=22.1
Q ss_pred CccCCCCCCCCceeeccchhcchhhhhhhhc
Q psy7550 26 ECFDCNAKNPTWSSVTYGVFICIDCSAVHRG 56 (144)
Q Consensus 26 ~C~DCg~~~p~w~s~~~GiflC~~CsgiHR~ 56 (144)
.|.-||.+.. ...||++.|..|++..|-
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 29 (78)
T 3cbb_A 2 LCAICGDRAT---GKHYGASSCDGCKGFFRR 29 (78)
T ss_dssp BCTTTSSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCeEeCCCCC---ceEeCCcchhhhceeeeE
Confidence 4778886543 468999999999998763
No 45
>2kq9_A DNAK suppressor protein; zinc binding protein, structural genomics, PSI-2, protein ST initiative; NMR {Agrobacterium tumefaciens str}
Probab=49.11 E-value=3.1 Score=28.58 Aligned_cols=41 Identities=17% Similarity=0.367 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCC-ceeeccchhcchhhhh
Q psy7550 11 IEVIFKKLRNIPTNKECFDCNAKNPT-WSSVTYGVFICIDCSA 52 (144)
Q Consensus 11 ~~~~~~~L~~~~~N~~C~DCg~~~p~-w~s~~~GiflC~~Csg 52 (144)
++..+..+. .+.-..|.+||.+=|. -.-.--++-.|+.|..
T Consensus 69 i~~Al~ri~-~g~yg~C~~Cg~~I~~~Rl~a~P~a~~Ci~Cq~ 110 (112)
T 2kq9_A 69 IDAALARIA-SGTFGTCVKCGKRISEDRLKAVPYTPFCQECAA 110 (112)
T ss_dssp HHHHHHHHH-HTCCSEETTTTEECCHHHHHHCSCCSSCHHHHH
T ss_pred HHHHHHhhh-CCCcCeeCCCCCcccHHHHhcCCCcchhHHHHh
Confidence 344444443 4677899999997441 1222336778999975
No 46
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=48.54 E-value=4.6 Score=26.55 Aligned_cols=41 Identities=12% Similarity=0.374 Sum_probs=28.2
Q ss_pred HHHHHHHH-hcCCCCCCccCCCCCCCCceeeccchhcchhhhhh
Q psy7550 11 IEVIFKKL-RNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAV 53 (144)
Q Consensus 11 ~~~~~~~L-~~~~~N~~C~DCg~~~p~w~s~~~GiflC~~Csgi 53 (144)
+++.++++ .+....-.|..||.... -....|++.|..|...
T Consensus 13 lRk~vk~ie~~q~~~y~Cp~CG~~~v--~r~atGiW~C~~Cg~~ 54 (83)
T 1vq8_Z 13 SRRRVAEIESEMNEDHACPNCGEDRV--DRQGTGIWQCSYCDYK 54 (83)
T ss_dssp HHHHHHHHHHHHHSCEECSSSCCEEE--EEEETTEEEETTTCCE
T ss_pred HHHHHHHHHHhccccCcCCCCCCcce--eccCCCeEECCCCCCE
Confidence 34555555 55667889999998432 2345799999999543
No 47
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=47.88 E-value=6.7 Score=23.83 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=20.1
Q ss_pred CCccCCCCCCCCceeeccchhcchhhhhh
Q psy7550 25 KECFDCNAKNPTWSSVTYGVFICIDCSAV 53 (144)
Q Consensus 25 ~~C~DCg~~~p~w~s~~~GiflC~~Csgi 53 (144)
..|.+||.....+ ...-|..+|..|.-+
T Consensus 12 ~~Cp~C~~~~lv~-D~~~ge~vC~~CGlV 39 (58)
T 1dl6_A 12 VTCPNHPDAILVE-DYRAGDMICPECGLV 39 (58)
T ss_dssp CSBTTBSSSCCEE-CSSSCCEECTTTCCE
T ss_pred ccCcCCCCCceeE-eCCCCeEEeCCCCCE
Confidence 4799999865322 346799999999544
No 48
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=45.14 E-value=8.7 Score=25.64 Aligned_cols=28 Identities=21% Similarity=0.642 Sum_probs=21.3
Q ss_pred CCCCCccCCCCCCCC-ceeec--cchhcchh
Q psy7550 22 PTNKECFDCNAKNPT-WSSVT--YGVFICID 49 (144)
Q Consensus 22 ~~N~~C~DCg~~~p~-w~s~~--~GiflC~~ 49 (144)
+....|.+|++.++. |+.+. -|-+-|.+
T Consensus 23 ~~~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr 53 (97)
T 2uzg_A 23 KSLGTCQDCKVQGPNLWACLENRCSYVGCGE 53 (97)
T ss_dssp HTTTCCSSSCCCCSSCEEECCTTCCCEECCT
T ss_pred CCCCcCcCcCCCCCCceeeecccCCCcccCC
Confidence 356789999976666 98888 88777743
No 49
>3iz6_N 40S ribosomal protein S29 (S14P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_n
Probab=42.00 E-value=25 Score=21.36 Aligned_cols=39 Identities=21% Similarity=0.550 Sum_probs=27.1
Q ss_pred CCCCCccCCCCCCCCceeeccchhcchhhhhhhhcCCCCCccee
Q psy7550 22 PTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVR 65 (144)
Q Consensus 22 ~~N~~C~DCg~~~p~w~s~~~GiflC~~CsgiHR~lg~~iS~Vk 65 (144)
++-+.|.-||.+..- -=.||..+|-.|- |.+-..|.+||
T Consensus 16 ~g~~rC~vcGr~~g~--iRkfGL~~cR~cf---Re~A~~iGF~k 54 (56)
T 3iz6_N 16 AGSRVCRVCGNSHGL--IRKYGLMCCRQCF---RSDAKDIGFIK 54 (56)
T ss_dssp CCCCCCSSCCCSCCC--TTTTSCTTHHHHH---HTTCCSTTCCS
T ss_pred CCcceeecCCCCccc--ccccCCcHHHHHH---HHHHHhcCcee
Confidence 467899999986432 2279999998874 55555665554
No 50
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=39.94 E-value=12 Score=25.64 Aligned_cols=26 Identities=19% Similarity=0.521 Sum_probs=21.4
Q ss_pred CCCCccCCCCCCCCceeeccchhcch
Q psy7550 23 TNKECFDCNAKNPTWSSVTYGVFICI 48 (144)
Q Consensus 23 ~N~~C~DCg~~~p~w~s~~~GiflC~ 48 (144)
-...|.+|+.....|+.+.-|-+-|.
T Consensus 23 ~~~~C~~C~~~~~~W~CL~CG~vgCg 48 (109)
T 3c5k_A 23 VTQPCGDCGTIQENWVCLSCYQVYCG 48 (109)
T ss_dssp TTCCCTTTCCCSSEEEETTTCCEEEC
T ss_pred cCCcCccccCCCCeeeeeecCccccC
Confidence 36789999999989998887777773
No 51
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=38.52 E-value=50 Score=20.43 Aligned_cols=26 Identities=15% Similarity=0.074 Sum_probs=19.2
Q ss_pred CCCHHHHHHHHh----hChHHHHHHHhhcCC
Q psy7550 72 NWTWVQLRQMQL----GGNANAVSFFNQHNC 98 (144)
Q Consensus 72 ~w~~~~l~~m~~----gGN~~~~~~~e~~~~ 98 (144)
.|+++|...|.. .|+ +-..+...+..
T Consensus 10 ~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f 39 (62)
T 1x58_A 10 DFTKEEVNYLFHGVKTMGN-HWNSILWSFPF 39 (62)
T ss_dssp SCCHHHHHHHHHHHHHHCS-CHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHHhH-hHHHHHHhCCC
Confidence 499999988754 477 77777776544
No 52
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=37.33 E-value=5.6 Score=27.91 Aligned_cols=40 Identities=13% Similarity=0.382 Sum_probs=28.1
Q ss_pred HHHHHHHH-hcCCCCCCccCCCCCCCCceeeccchhcchhhhh
Q psy7550 11 IEVIFKKL-RNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSA 52 (144)
Q Consensus 11 ~~~~~~~L-~~~~~N~~C~DCg~~~p~w~s~~~GiflC~~Csg 52 (144)
+++.++++ .+....-.|.-||...... ...||+-|..|.-
T Consensus 46 lRK~vkkiE~~q~akytCPfCGk~~vKR--~avGIW~C~~Cgk 86 (116)
T 3cc2_Z 46 SRRRVAEIESEMNEDHACPNCGEDRVDR--QGTGIWQCSYCDY 86 (116)
T ss_dssp HHHHHHHHHHHHHSCEECSSSCCEEEEE--EETTEEEETTTCC
T ss_pred HHHHHHHHHHHhccCCcCCCCCCceeEe--cCceeEECCCCCC
Confidence 44555555 5667888999999754333 3469999999954
No 53
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=37.14 E-value=38 Score=24.82 Aligned_cols=47 Identities=21% Similarity=0.377 Sum_probs=34.4
Q ss_pred CChhHHHHHHHHHhcCCC--CCCccCCCCCCCCceeeccchhcchhhhh
Q psy7550 6 PNKNDIEVIFKKLRNIPT--NKECFDCNAKNPTWSSVTYGVFICIDCSA 52 (144)
Q Consensus 6 ~~~~~~~~~~~~L~~~~~--N~~C~DCg~~~p~w~s~~~GiflC~~Csg 52 (144)
..++-.+++..+++.... +..|.-||..++...=--|.+.||..|..
T Consensus 16 ~~~~~r~~~~~~v~~~~~~~e~~Ct~CG~~~~~~~HPlf~v~lC~~Ck~ 64 (159)
T 3a1b_A 16 PRKQLRERLVYEVRQKCRNIEDICISCGSLNVTLEHPLFVGGMCQNCKN 64 (159)
T ss_dssp -CHHHHHHHHHHHHTTSSCGGGSBTTTCCSCCCEECSSBSSEECHHHHH
T ss_pred chHHHHHhhhHHHHhccCCccCcccCCCCcCccccCCCccchhhHHHHH
Confidence 345556666777766543 56999999988876555689999999974
No 54
>3j21_d 50S ribosomal protein L34E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=36.95 E-value=18 Score=24.13 Aligned_cols=29 Identities=17% Similarity=0.402 Sum_probs=19.5
Q ss_pred CCCCccCCCCCC-------CC----------ceeeccchhcchhhhh
Q psy7550 23 TNKECFDCNAKN-------PT----------WSSVTYGVFICIDCSA 52 (144)
Q Consensus 23 ~N~~C~DCg~~~-------p~----------w~s~~~GiflC~~Csg 52 (144)
.--.|.|||.+- |. -++=.|| .+|.+|-.
T Consensus 32 ~~pkC~~cg~~L~Gi~~~Rp~~~~rlsK~~KtvsRaYG-~lC~~Cvr 77 (89)
T 3j21_d 32 KIAHCAMCGRPLNGIPRGRPVEMRKLPKTKKRPERPMP-HLCPRCMR 77 (89)
T ss_dssp CCCBCSSSCCBCTTCCCCCTTGGGGSCHHHHCCSSSCT-TSCHHHHH
T ss_pred CCCCCCCCCCccCCccCccHHHHHhcccCCCCcCCCcc-cchHHHHH
Confidence 334699999852 21 2344599 99999954
No 55
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=36.07 E-value=8.8 Score=32.44 Aligned_cols=30 Identities=27% Similarity=0.710 Sum_probs=23.7
Q ss_pred CCCCccCCCCCCCCceeeccchhcchhhhhhhh
Q psy7550 23 TNKECFDCNAKNPTWSSVTYGVFICIDCSAVHR 55 (144)
Q Consensus 23 ~N~~C~DCg~~~p~w~s~~~GiflC~~CsgiHR 55 (144)
.++.|.-||.+... ..||+..|..|++.-|
T Consensus 136 ~~~~C~VCg~~a~g---~hygv~sC~~Ck~FFr 165 (467)
T 3dzy_A 136 TKHICAICGDRSSG---KHYGVYSCEGCKGFFK 165 (467)
T ss_dssp -CEECTTTSSEECS---EETTEECCHHHHHHHH
T ss_pred CCCcceeCCCCCCC---CcCCCcchhhhhHhcc
Confidence 45679999986443 5899999999998765
No 56
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=35.02 E-value=7.3 Score=23.36 Aligned_cols=25 Identities=24% Similarity=0.578 Sum_probs=20.2
Q ss_pred CCCCCccCCCCCCCCceeeccchhcchhhhh
Q psy7550 22 PTNKECFDCNAKNPTWSSVTYGVFICIDCSA 52 (144)
Q Consensus 22 ~~N~~C~DCg~~~p~w~s~~~GiflC~~Csg 52 (144)
-..++|..||+. +..|+.-|..|..
T Consensus 12 ~~k~iCpkC~a~------~~~gaw~CrKCG~ 36 (51)
T 3j21_g 12 FKKYVCLRCGAT------NPWGAKKCRKCGY 36 (51)
T ss_dssp SSEEECTTTCCE------ECTTCSSCSSSSS
T ss_pred hCCccCCCCCCc------CCCCceecCCCCC
Confidence 357899999998 4579999999854
No 57
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=29.95 E-value=19 Score=25.31 Aligned_cols=29 Identities=24% Similarity=0.653 Sum_probs=22.5
Q ss_pred CCCCCCccCCCCCCCCceeeccchhcchh
Q psy7550 21 IPTNKECFDCNAKNPTWSSVTYGVFICID 49 (144)
Q Consensus 21 ~~~N~~C~DCg~~~p~w~s~~~GiflC~~ 49 (144)
.|.+..|.+|+....-|+++.-|-+-|.+
T Consensus 31 ~~~~~~C~~C~~~~~LwlCL~CG~vgCgr 59 (129)
T 2g45_A 31 PPCGWKCSKCDMRENLWLNLTDGSILCGR 59 (129)
T ss_dssp CCCBCCCSSSSCCSSEEEETTTCCEEECC
T ss_pred CCCCCcCccccCcCceEEeccCCccccCc
Confidence 34567899999998888888877777743
No 58
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=29.92 E-value=14 Score=29.71 Aligned_cols=30 Identities=23% Similarity=0.536 Sum_probs=22.2
Q ss_pred CCccCCCCCCCCc-eeeccchhcchhhhhhh
Q psy7550 25 KECFDCNAKNPTW-SSVTYGVFICIDCSAVH 54 (144)
Q Consensus 25 ~~C~DCg~~~p~w-~s~~~GiflC~~CsgiH 54 (144)
..|-+||..+|.- ..-.-|-.||..|.-|-
T Consensus 22 ~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl 52 (345)
T 3k7a_M 22 LTCPECKVYPPKIVERFSEGDVVCALCGLVL 52 (345)
T ss_dssp CCCSTTCCSCCCCCCCSSSCSCCCSSSCCCC
T ss_pred CcCcCCCCCCCceEEECCCCCEecCCCCeEc
Confidence 4799999975532 23467999999997754
No 59
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=27.72 E-value=47 Score=24.45 Aligned_cols=29 Identities=17% Similarity=0.442 Sum_probs=18.9
Q ss_pred CCCccCCCCCCCCceee--------ccchhcchhhhh
Q psy7550 24 NKECFDCNAKNPTWSSV--------TYGVFICIDCSA 52 (144)
Q Consensus 24 N~~C~DCg~~~p~w~s~--------~~GiflC~~Csg 52 (144)
...|..||.....|.-+ ..-.++|..|..
T Consensus 137 ~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~ 173 (178)
T 3po3_S 137 RFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGN 173 (178)
T ss_dssp SSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCC
T ss_pred CcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCC
Confidence 45899999987655321 134677888853
No 60
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=27.64 E-value=35 Score=20.24 Aligned_cols=31 Identities=19% Similarity=0.408 Sum_probs=21.2
Q ss_pred CCCCccCCCCCCCCceee--ccchhcchhhhhh
Q psy7550 23 TNKECFDCNAKNPTWSSV--TYGVFICIDCSAV 53 (144)
Q Consensus 23 ~N~~C~DCg~~~p~w~s~--~~GiflC~~Csgi 53 (144)
....|.=||.+..+--.+ .-|++||..|...
T Consensus 10 ~~~~CSFCGk~~~ev~~LIaGpgv~IC~eCi~~ 42 (51)
T 2ds5_A 10 KLLYCSFCGKSQHEVRKLIAGPSVYICDECVDL 42 (51)
T ss_dssp CCCBCTTTCCBTTTSSCEEECSSCEEEHHHHHH
T ss_pred CCcEecCCCCCHHHhcccCCCCCCEehHHHHHH
Confidence 345899999976433222 3489999999753
No 61
>3u5e_g 60S ribosomal protein L34-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_g 4b6a_g 3izc_i 3izs_i
Probab=27.11 E-value=26 Score=24.60 Aligned_cols=30 Identities=30% Similarity=0.533 Sum_probs=19.3
Q ss_pred CCCCccCCCCCCCC-----------------ceeeccchhcchhhhh
Q psy7550 23 TNKECFDCNAKNPT-----------------WSSVTYGVFICIDCSA 52 (144)
Q Consensus 23 ~N~~C~DCg~~~p~-----------------w~s~~~GiflC~~Csg 52 (144)
.--.|.|||.+-+- -+|=.||-.+|..|-.
T Consensus 40 ~~pkCg~Cg~~L~GI~~~RP~e~~rlsK~~KtvsRaYGG~lC~~CVr 86 (121)
T 3u5e_g 40 TRPKCGDCGSALQGISTLRPRQYATVSKTHKTVSRAYGGSRCANCVK 86 (121)
T ss_dssp CCCBCTTTCCBCTTCCCCCGGGGGSSCGGGSCCSSTTTTTSCSHHHH
T ss_pred CCCCCCCCCCccCCccCCcHHHHHhcccCCCCcccCCcccchHHHHH
Confidence 33459999986321 2344588888888843
No 62
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=26.88 E-value=21 Score=28.87 Aligned_cols=27 Identities=22% Similarity=0.603 Sum_probs=20.7
Q ss_pred CccCCCCCCCCc-eeeccchhcchhhhh
Q psy7550 26 ECFDCNAKNPTW-SSVTYGVFICIDCSA 52 (144)
Q Consensus 26 ~C~DCg~~~p~w-~s~~~GiflC~~Csg 52 (144)
.|.+||...|.- ....-|-.||..|.-
T Consensus 23 ~Cp~C~~~~~~lv~D~~~G~~vC~~CGl 50 (345)
T 4bbr_M 23 TCPECKVYPPKIVERFSEGDVVCALCGL 50 (345)
T ss_dssp CCSSCCCSSCCEEEEGGGTEEEETTTCB
T ss_pred cCCCCCCCCCceeEECCCCcEEeCCCCC
Confidence 799999854543 245789999999964
No 63
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.12 E-value=48 Score=20.02 Aligned_cols=18 Identities=17% Similarity=0.191 Sum_probs=12.3
Q ss_pred eeeccCCCCCCHHHHHHHH
Q psy7550 64 VRSTQLDTNWTWVQLRQMQ 82 (144)
Q Consensus 64 VkS~~ld~~w~~~~l~~m~ 82 (144)
+.++..+. |+++|...+.
T Consensus 4 ~p~~~~~~-WT~eE~~~Fe 21 (63)
T 2yqk_A 4 GSSGIEKC-WTEDEVKRFV 21 (63)
T ss_dssp CCCCCCCS-CCHHHHHHHH
T ss_pred CCCcCCCC-cCHHHHHHHH
Confidence 33444566 9999997664
No 64
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=25.85 E-value=32 Score=21.70 Aligned_cols=30 Identities=20% Similarity=0.420 Sum_probs=20.8
Q ss_pred CCCccCCCCCCCCceee--ccchhcchhhhhh
Q psy7550 24 NKECFDCNAKNPTWSSV--TYGVFICIDCSAV 53 (144)
Q Consensus 24 N~~C~DCg~~~p~w~s~--~~GiflC~~Csgi 53 (144)
...|.=||.+..+--.+ .-|+|||..|...
T Consensus 18 ~~~CSFCGK~e~eV~~LIaGpgvyICdeCI~~ 49 (67)
T 1ovx_A 18 LLYCSFCGKSQHEVRKLIAGPSVYICDECVDL 49 (67)
T ss_dssp CCCCTTTCCCTTTSSSEEECSSCEEEHHHHHH
T ss_pred CcEecCCCCCHHHHcccCCCCCCChhHHHHHH
Confidence 35799999976433322 3489999999753
No 65
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=24.00 E-value=30 Score=26.14 Aligned_cols=28 Identities=25% Similarity=0.608 Sum_probs=21.4
Q ss_pred CccCCCCCCCCce-eeccchhcchhhhhh
Q psy7550 26 ECFDCNAKNPTWS-SVTYGVFICIDCSAV 53 (144)
Q Consensus 26 ~C~DCg~~~p~w~-s~~~GiflC~~Csgi 53 (144)
.|-+||...+.-+ ...-|-.||.+|.-|
T Consensus 23 ~CPECGs~~t~IV~D~erGE~VCsdCGLV 51 (197)
T 3k1f_M 23 TCPECKVYPPKIVERFSEGDVVCALCGLV 51 (197)
T ss_dssp CCTTTCCSSCCEEEEGGGTEEEETTTCBB
T ss_pred ECcCCCCcCCeEEEeCCCCEEEEcCCCCC
Confidence 7999998544433 357899999999654
No 66
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=23.97 E-value=17 Score=20.89 Aligned_cols=27 Identities=22% Similarity=0.623 Sum_probs=18.3
Q ss_pred CCccCCCCCCCCceeeccchhcchhhhh
Q psy7550 25 KECFDCNAKNPTWSSVTYGVFICIDCSA 52 (144)
Q Consensus 25 ~~C~DCg~~~p~w~s~~~GiflC~~Csg 52 (144)
..|.+||...-.+ .-.-|-++|..|.-
T Consensus 6 ~~CP~C~~~~l~~-d~~~gelvC~~CG~ 32 (50)
T 1pft_A 6 KVCPACESAELIY-DPERGEIVCAKCGY 32 (50)
T ss_dssp CSCTTTSCCCEEE-ETTTTEEEESSSCC
T ss_pred EeCcCCCCcceEE-cCCCCeEECcccCC
Confidence 4799998853322 22468899999954
No 67
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=23.93 E-value=15 Score=27.45 Aligned_cols=24 Identities=21% Similarity=0.549 Sum_probs=18.8
Q ss_pred CCCccCCCCCCCCceeeccchhcchhhhh
Q psy7550 24 NKECFDCNAKNPTWSSVTYGVFICIDCSA 52 (144)
Q Consensus 24 N~~C~DCg~~~p~w~s~~~GiflC~~Csg 52 (144)
...|.-||..-+.- |-.+|..|++
T Consensus 163 ~~~C~~CGE~~~~~-----g~~~C~~C~~ 186 (191)
T 3d00_A 163 IVLCPQCREAYPAQ-----DGELCLSCQG 186 (191)
T ss_dssp EEECTTTCCEEEGG-----GCSSCHHHHT
T ss_pred CEECCcCCCChhhC-----CCcCCccccC
Confidence 34699999865543 9999999985
No 68
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.43 E-value=41 Score=20.15 Aligned_cols=17 Identities=18% Similarity=0.532 Sum_probs=13.4
Q ss_pred CCCCCCccCCCCCCCCce
Q psy7550 21 IPTNKECFDCNAKNPTWS 38 (144)
Q Consensus 21 ~~~N~~C~DCg~~~p~w~ 38 (144)
.|.+..|+-||.++ .|+
T Consensus 4 ~p~~~~C~kCGk~G-H~~ 20 (55)
T 2ysa_A 4 GSSGYTCFRCGKPG-HYI 20 (55)
T ss_dssp SSSSCCCTTTCCTT-SCG
T ss_pred CCCCCccccCCCcC-ccc
Confidence 46788999999986 454
No 69
>4a18_L RPL34; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_L 4a1b_L 4a1d_L 4adx_4
Probab=23.27 E-value=33 Score=24.14 Aligned_cols=14 Identities=36% Similarity=0.700 Sum_probs=10.6
Q ss_pred eeccchhcchhhhh
Q psy7550 39 SVTYGVFICIDCSA 52 (144)
Q Consensus 39 s~~~GiflC~~Csg 52 (144)
|=.||-.+|..|-.
T Consensus 75 sRaYGG~lC~~CVr 88 (123)
T 4a18_L 75 SRVYGGELCHTCVR 88 (123)
T ss_dssp SSTTSSSCCHHHHH
T ss_pred ccCCCccchHHHHH
Confidence 44599999999854
No 70
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=23.24 E-value=9.8 Score=22.65 Aligned_cols=30 Identities=17% Similarity=0.553 Sum_probs=21.1
Q ss_pred CCCccCCCCCCCCceeecc--------chhcchhhhhh
Q psy7550 24 NKECFDCNAKNPTWSSVTY--------GVFICIDCSAV 53 (144)
Q Consensus 24 N~~C~DCg~~~p~w~s~~~--------GiflC~~Csgi 53 (144)
+..|..||.....|..+-+ -.++|.+|...
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~ 52 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHT 52 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCE
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCE
Confidence 5689999998776665443 34788888544
No 71
>3j20_P 30S ribosomal protein S14P type Z; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.57 E-value=55 Score=19.80 Aligned_cols=29 Identities=21% Similarity=0.628 Sum_probs=20.9
Q ss_pred CCCCCccCCCCCCCCceeeccchhcchhhhh
Q psy7550 22 PTNKECFDCNAKNPTWSSVTYGVFICIDCSA 52 (144)
Q Consensus 22 ~~N~~C~DCg~~~p~w~s~~~GiflC~~Csg 52 (144)
++-..|.-||.+..- -=.||..+|-.|-.
T Consensus 16 rg~~rC~vcGr~~g~--iRkfGL~~cR~cfR 44 (56)
T 3j20_P 16 KGARRCIRCGQYGPI--IRIQGLMLCRHCFR 44 (56)
T ss_dssp STTCCCSSSCCSSSC--CCTTTCCCCHHHHH
T ss_pred CCceEeecCCCCccc--ccccCChHHHHHHH
Confidence 466889999986432 22789999988853
No 72
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=20.88 E-value=1.2e+02 Score=21.07 Aligned_cols=40 Identities=10% Similarity=0.085 Sum_probs=26.2
Q ss_pred CCHHHHHHHH----hhChHHHHHHHhhc-----CCCCcchHHHhhHHHH
Q psy7550 73 WTWVQLRQMQ----LGGNANAVSFFNQH-----NCTSKDAQQKYNSRAA 112 (144)
Q Consensus 73 w~~~~l~~m~----~gGN~~~~~~~e~~-----~~~~~~~~~ky~~~~~ 112 (144)
||.+|.+.|. ..|+.+-..+.... +....+++.+|.....
T Consensus 20 WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk 68 (121)
T 2juh_A 20 FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVH 68 (121)
T ss_dssp CCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 9999988775 44776666666543 3444567777766553
No 73
>2lyy_A Uncharacterized protein; DUF3144, PF11342, structural genomics, unknown function; NMR {Shewanella oneidensis}
Probab=20.86 E-value=1.1e+02 Score=20.45 Aligned_cols=59 Identities=10% Similarity=0.045 Sum_probs=38.4
Q ss_pred CCHHHHHHHHhhChHHHHHHHhhcCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHHHcC
Q psy7550 73 WTWVQLRQMQLGGNANAVSFFNQHNCTSKDAQQKYNSRAAQLYREKLQHAAVQAMKIHG 131 (144)
Q Consensus 73 w~~~~l~~m~~gGN~~~~~~~e~~~~~~~~~~~ky~~~~~~~yr~kl~~~~~~~~~~~~ 131 (144)
+...+|..--.-+..++|.|.-+....+...-..-+..+-.+|.+.++.+....+..|.
T Consensus 27 ~~~g~Vsas~lyAaARfnAfv~a~~~~~~~~~~~~ke~~i~yf~~qyr~ML~~nlddyi 85 (96)
T 2lyy_A 27 IQTGEVSASFMWALARYNAWFGSTSFETKEQMQAKKQEMMDYYMDRYKEMLDANMEDYI 85 (96)
T ss_dssp SCHHHHHHHHHHHHHHHSGGGGGGTCSSHHHHHTTHHHHHHHHHGGGHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567766555688999999988877765433333455556666666666666666553
No 74
>3iz5_i 60S ribosomal protein L34 (L34E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_i
Probab=20.47 E-value=48 Score=23.18 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=19.6
Q ss_pred CCCccCCCCCC-------CC-c-----------eeeccchhcchhhhh
Q psy7550 24 NKECFDCNAKN-------PT-W-----------SSVTYGVFICIDCSA 52 (144)
Q Consensus 24 N~~C~DCg~~~-------p~-w-----------~s~~~GiflC~~Csg 52 (144)
--.|+|||.+- |. + ++=.||-.+|..|-.
T Consensus 41 ~pkC~~cg~~L~GI~~~Rp~e~~~~rlsK~~KtvsRaYGG~lC~~CVr 88 (119)
T 3iz5_i 41 GPKCPVTGKKIQGIPHLRPTEYKRPRLSRNRRTVNRPYGGVLSGPAVR 88 (119)
T ss_dssp CCCSTTSSCCSSSCCSSCSSTTCCCCCCSCCCCCBCCSCCCCHHHHHH
T ss_pred CCCCCCCCCccCCccCCCchhhhhhhccccCCCcccCCCccchHHHHH
Confidence 33599999852 21 2 344589999999864
No 75
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=20.00 E-value=80 Score=26.28 Aligned_cols=43 Identities=16% Similarity=0.283 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcCCCCC--CccCCCCCCCCceeeccchhcchhhhh
Q psy7550 10 DIEVIFKKLRNIPTNK--ECFDCNAKNPTWSSVTYGVFICIDCSA 52 (144)
Q Consensus 10 ~~~~~~~~L~~~~~N~--~C~DCg~~~p~w~s~~~GiflC~~Csg 52 (144)
.++++..+++....+- .|.-||..++.-.=--|.+.+|..|..
T Consensus 34 ~~~~~~~~~~~~~~~~e~~C~~CG~~~~~~~HPl~~v~lC~~Ck~ 78 (386)
T 2pv0_B 34 GRDLIAYEVKANQRNIEDICICCGSLQVHTQHPLFEGGICAPCKD 78 (386)
T ss_dssp CHHHHHHHHHSSCCCGGGSBTTTCCSCCCSBCSSBSSBCCHHHHH
T ss_pred cHHHHHHHHHhccCcccceeCCCCCcCccccCCCcCcchhhHHHH
Confidence 3456777777766555 999999987755444688999999986
Done!