RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7550
         (144 letters)



>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP
           domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 122

 Score =  115 bits (289), Expect = 8e-35
 Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 3/105 (2%)

Query: 14  IFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNW 73
           I  +++ +  N  C DC A +PTW S   G+  CI+CS +HR LGVH S ++S  LD   
Sbjct: 5   IISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDV-L 63

Query: 74  TWVQLRQMQLGGNANAVSFFNQHNCTSKDAQQKYNSRAAQLYREK 118
              +L   +  GNA          C   +   K N  +  + R+ 
Sbjct: 64  GTSELLLAKNIGNAGFNEIM--ECCLPSEDPVKPNPGSDMIARKD 106


>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO,
           C-terminal domain {Deinococcus radiodurans [TaxId:
           1299]}
          Length = 157

 Score = 28.5 bits (63), Expect = 0.19
 Identities = 9/56 (16%), Positives = 14/56 (25%), Gaps = 1/56 (1%)

Query: 22  PTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQ 77
           P    C  C A +P       G  +C  C+A        +       +        
Sbjct: 68  PQTARCARCGAPDPEHPDPLGGQLLCSKCAA-LPPYPPAVLDFLRHAVRRTVRASF 122


>d2bjra1 b.169.1.1 (A:6-184) Sperm motility protein MFP2 {Pig
           roundworm (Ascaris suum), isoform B [TaxId: 6253]}
          Length = 179

 Score = 27.5 bits (61), Expect = 0.54
 Identities = 8/31 (25%), Positives = 17/31 (54%)

Query: 5   GPNKNDIEVIFKKLRNIPTNKECFDCNAKNP 35
           G    ++ +I ++L+  P   EC +C ++ P
Sbjct: 149 GSALANMLIIARELKGGPPYCECEECKSEPP 179


>d1muka_ e.8.1.4 (A:) Reovirus polymerase lambda3 {Reovirus [TaxId:
           10891]}
          Length = 1264

 Score = 26.1 bits (57), Expect = 2.1
 Identities = 7/30 (23%), Positives = 16/30 (53%), Gaps = 3/30 (10%)

Query: 38  SSVTYGVFICIDCSAVHRGLGV---HLSFV 64
           +S+T+  F+ +  +A+H G+        F+
Sbjct: 590 ASITWDFFLSVIMAAIHEGVASSSIGKPFM 619


>d1qkia2 d.81.1.5 (A:200-434,A:450-511) Glucose 6-phosphate
           dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
          Length = 297

 Score = 25.8 bits (56), Expect = 2.3
 Identities = 9/56 (16%), Positives = 17/56 (30%)

Query: 22  PTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQ 77
           P          K P          + +     ++ + + + FVRS +L   W    
Sbjct: 197 PNEAVYTKMMTKKPGMFFNPEESELDLTYGNRYKNVKLPMHFVRSDELLEAWRIFT 252


>d1a3qa1 b.1.18.1 (A:227-327) p52 subunit of NF-kappa B (NFKB)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 101

 Score = 24.2 bits (53), Expect = 3.9
 Identities = 6/15 (40%), Positives = 9/15 (60%)

Query: 1  MSGEGPNKNDIEVIF 15
          +  +   K+DIEV F
Sbjct: 22 LLCDKVQKDDIEVRF 36


>d1qjwa_ c.6.1.1 (A:) Cellobiohydrolase II (Cel6) {Trichoderma
           reesei, Cel6a [TaxId: 51453]}
          Length = 362

 Score = 24.5 bits (53), Expect = 5.7
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 11/55 (20%)

Query: 87  ANAVSFFNQHNCTSKDAQQKYNSRAAQLYREKLQHAAVQAMKIHGTKLFLDAMHG 141
           AN V+      C            A   Y E + +A V  + +    ++LDA H 
Sbjct: 139 ANLVTNLGTPKCA----------NAQSAYLECINYA-VTQLNLPNVAMYLDAGHA 182


>d2g6ta1 c.147.1.1 (A:1-305) Hypothetical protein CAC2185
           {Clostridium acetobutylicum [TaxId: 1488]}
          Length = 305

 Score = 24.4 bits (53), Expect = 6.1
 Identities = 7/38 (18%), Positives = 17/38 (44%)

Query: 82  QLGGNANAVSFFNQHNCTSKDAQQKYNSRAAQLYREKL 119
            LG   N +     H  +  +A+  ++ R  ++ ++ L
Sbjct: 178 SLGTGDNKIILNFNHQASFAEAKNDWDERKTRINKKNL 215


>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1,
          Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 76

 Score = 23.1 bits (49), Expect = 8.3
 Identities = 4/29 (13%), Positives = 10/29 (34%)

Query: 26 ECFDCNAKNPTWSSVTYGVFICIDCSAVH 54
          +C   +             +IC +C+ + 
Sbjct: 43 DCVGISEARGRLLERNGEDYICPNCTILS 71


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.132    0.419 

Gapped
Lambda     K      H
   0.267   0.0556    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 533,623
Number of extensions: 21268
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 14
Length of query: 144
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 67
Effective length of database: 1,350,386
Effective search space: 90475862
Effective search space used: 90475862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.0 bits)