Query psy7554
Match_columns 115
No_of_seqs 191 out of 1249
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 21:21:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7554.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7554hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14729 miaA tRNA delta(2)-is 100.0 1.1E-39 2.3E-44 265.1 7.9 86 25-112 7-92 (300)
2 COG0324 MiaA tRNA delta(2)-iso 100.0 3.3E-39 7.1E-44 263.7 7.9 87 25-112 6-92 (308)
3 PLN02748 tRNA dimethylallyltra 100.0 5.1E-36 1.1E-40 255.6 8.5 87 25-112 25-111 (468)
4 TIGR00174 miaA tRNA isopenteny 100.0 1.9E-33 4.1E-38 227.2 7.6 87 25-112 2-88 (287)
5 PLN02840 tRNA dimethylallyltra 100.0 1.5E-32 3.3E-37 232.1 8.4 87 25-112 24-110 (421)
6 PRK00091 miaA tRNA delta(2)-is 100.0 2.5E-32 5.4E-37 221.8 7.8 87 25-112 7-93 (307)
7 KOG1384|consensus 100.0 2.3E-32 5E-37 226.0 7.1 91 18-112 6-96 (348)
8 PLN02165 adenylate isopentenyl 100.0 6.7E-31 1.5E-35 216.8 7.9 103 6-112 30-133 (334)
9 PF01715 IPPT: IPP transferase 99.9 2.4E-22 5.3E-27 159.1 3.9 56 57-112 1-56 (253)
10 PF01745 IPT: Isopentenyl tran 99.8 4.2E-20 9E-25 146.6 4.3 85 25-110 4-89 (233)
11 PRK04220 2-phosphoglycerate ki 99.3 2.9E-13 6.2E-18 110.9 1.2 78 23-111 93-189 (301)
12 cd00071 GMPK Guanosine monopho 98.9 1.1E-10 2.5E-15 84.0 -0.7 62 25-98 2-66 (137)
13 TIGR03263 guanyl_kin guanylate 98.7 2.6E-09 5.6E-14 77.7 -1.2 63 25-97 4-66 (180)
14 PRK00300 gmk guanylate kinase; 98.6 4.2E-08 9.2E-13 72.8 3.5 54 25-88 8-61 (205)
15 PRK05800 cobU adenosylcobinami 98.5 4.6E-08 1E-12 73.4 1.4 48 25-84 4-52 (170)
16 PF13207 AAA_17: AAA domain; P 98.4 9.2E-08 2E-12 65.1 1.8 31 25-56 2-32 (121)
17 TIGR01313 therm_gnt_kin carboh 98.3 8.5E-07 1.8E-11 63.8 4.1 36 25-61 1-36 (163)
18 PRK07261 topology modulation p 98.2 9.3E-07 2E-11 65.6 3.4 37 25-62 3-39 (171)
19 PF13671 AAA_33: AAA domain; P 98.1 1.2E-06 2.7E-11 60.8 2.3 33 25-58 2-34 (143)
20 PRK06217 hypothetical protein; 98.1 2E-06 4.4E-11 63.7 3.2 33 25-58 4-36 (183)
21 PF00625 Guanylate_kin: Guanyl 98.1 1.9E-06 4.2E-11 63.7 2.2 51 25-84 5-55 (183)
22 PRK08118 topology modulation p 98.0 2.6E-06 5.5E-11 63.3 2.3 33 25-58 4-36 (167)
23 PRK00131 aroK shikimate kinase 98.0 4.2E-06 9.2E-11 59.5 2.9 33 24-57 6-38 (175)
24 cd02021 GntK Gluconate kinase 98.0 5.8E-06 1.3E-10 58.6 3.4 32 25-57 2-33 (150)
25 PRK05057 aroK shikimate kinase 98.0 8.9E-06 1.9E-10 60.4 4.2 65 25-109 7-71 (172)
26 cd02020 CMPK Cytidine monophos 98.0 5E-06 1.1E-10 57.7 2.6 30 25-55 2-31 (147)
27 cd01428 ADK Adenylate kinase ( 97.9 7.7E-06 1.7E-10 59.6 3.1 31 25-56 2-32 (194)
28 PRK14737 gmk guanylate kinase; 97.9 1E-05 2.3E-10 61.2 3.6 50 25-84 7-56 (186)
29 TIGR01359 UMP_CMP_kin_fam UMP- 97.9 8.7E-06 1.9E-10 59.3 3.0 30 25-55 2-31 (183)
30 smart00382 AAA ATPases associa 97.9 1.3E-05 2.8E-10 52.4 3.5 26 24-49 4-29 (148)
31 cd00464 SK Shikimate kinase (S 97.9 7.6E-06 1.6E-10 57.5 2.5 33 24-57 1-33 (154)
32 PRK03839 putative kinase; Prov 97.9 9.3E-06 2E-10 59.5 2.9 39 25-66 3-41 (180)
33 PRK06547 hypothetical protein; 97.9 1.1E-05 2.3E-10 60.7 2.8 35 25-62 18-52 (172)
34 PRK14532 adenylate kinase; Pro 97.9 1.1E-05 2.5E-10 59.3 2.9 30 25-55 3-32 (188)
35 PRK12337 2-phosphoglycerate ki 97.8 7.2E-06 1.6E-10 71.3 1.7 39 25-63 258-297 (475)
36 PF00004 AAA: ATPase family as 97.8 1.5E-05 3.2E-10 53.9 2.1 35 25-60 1-35 (132)
37 PRK13947 shikimate kinase; Pro 97.8 1.9E-05 4.1E-10 56.9 2.7 33 24-57 3-35 (171)
38 PRK06762 hypothetical protein; 97.7 1.5E-05 3.4E-10 57.4 2.1 33 25-58 5-39 (166)
39 PRK14530 adenylate kinase; Pro 97.7 2.1E-05 4.5E-10 59.7 2.8 30 25-55 6-35 (215)
40 TIGR01351 adk adenylate kinase 97.7 1.9E-05 4E-10 59.7 2.4 31 25-56 2-32 (210)
41 TIGR01360 aden_kin_iso1 adenyl 97.7 1.8E-05 4E-10 57.2 1.9 31 25-56 6-36 (188)
42 PF13238 AAA_18: AAA domain; P 97.7 2.4E-05 5.2E-10 52.7 2.4 22 25-46 1-22 (129)
43 cd00009 AAA The AAA+ (ATPases 97.7 2.5E-05 5.4E-10 51.9 2.4 40 24-64 21-63 (151)
44 PRK14531 adenylate kinase; Pro 97.7 2.3E-05 5E-10 58.2 2.4 31 25-56 5-35 (183)
45 PRK04182 cytidylate kinase; Pr 97.7 2.7E-05 5.9E-10 55.8 2.7 30 25-55 3-32 (180)
46 PHA02530 pseT polynucleotide k 97.7 3E-05 6.6E-10 60.7 2.8 32 25-57 5-37 (300)
47 PRK03731 aroL shikimate kinase 97.7 3.3E-05 7.1E-10 55.9 2.7 32 25-57 5-36 (171)
48 smart00072 GuKc Guanylate kina 97.7 4.9E-05 1.1E-09 56.4 3.7 51 25-84 5-55 (184)
49 TIGR02173 cyt_kin_arch cytidyl 97.6 3.5E-05 7.6E-10 55.0 2.7 31 25-56 3-33 (171)
50 PRK08233 hypothetical protein; 97.6 4.8E-05 1E-09 54.8 3.2 32 25-57 6-38 (182)
51 PRK00279 adk adenylate kinase; 97.6 4.5E-05 9.8E-10 57.8 2.9 31 25-56 3-33 (215)
52 COG0572 Udk Uridine kinase [Nu 97.6 6.9E-05 1.5E-09 59.5 3.8 53 18-78 5-60 (218)
53 cd01918 HprK_C HprK/P, the bif 97.6 5.6E-05 1.2E-09 56.6 3.0 67 24-92 16-82 (149)
54 PRK14527 adenylate kinase; Pro 97.6 4.5E-05 9.8E-10 56.7 2.3 32 25-57 9-40 (191)
55 PF07724 AAA_2: AAA domain (Cd 97.5 5.7E-05 1.2E-09 56.7 2.6 25 24-48 5-29 (171)
56 cd02024 NRK1 Nicotinamide ribo 97.5 7.3E-05 1.6E-09 57.3 3.2 33 25-58 2-35 (187)
57 PRK13949 shikimate kinase; Pro 97.5 7.7E-05 1.7E-09 55.4 3.0 33 24-57 3-35 (169)
58 PF07728 AAA_5: AAA domain (dy 97.5 6.3E-05 1.4E-09 52.6 2.3 26 25-50 2-27 (139)
59 PRK02496 adk adenylate kinase; 97.5 5.5E-05 1.2E-09 55.6 2.0 32 25-57 4-35 (184)
60 cd02023 UMPK Uridine monophosp 97.5 9.2E-05 2E-09 55.0 3.2 37 25-64 2-41 (198)
61 cd02028 UMPK_like Uridine mono 97.5 0.00027 5.9E-09 52.9 5.5 36 25-61 2-42 (179)
62 PTZ00088 adenylate kinase 1; P 97.5 7.7E-05 1.7E-09 58.6 2.6 32 25-57 9-40 (229)
63 PRK05480 uridine/cytidine kina 97.5 9.8E-05 2.1E-09 55.4 2.9 32 25-57 9-43 (209)
64 PRK14528 adenylate kinase; Pro 97.4 9.2E-05 2E-09 55.5 2.7 38 25-64 4-41 (186)
65 PRK13946 shikimate kinase; Pro 97.4 0.00012 2.6E-09 54.5 3.0 31 25-56 13-43 (184)
66 COG1219 ClpX ATP-dependent pro 97.4 9.1E-05 2E-09 63.0 2.6 43 17-60 89-134 (408)
67 PF00485 PRK: Phosphoribulokin 97.4 8.7E-05 1.9E-09 55.4 2.1 23 25-47 2-24 (194)
68 PTZ00301 uridine kinase; Provi 97.4 8.9E-05 1.9E-09 57.5 2.2 68 25-105 6-80 (210)
69 PF00406 ADK: Adenylate kinase 97.4 5.3E-05 1.1E-09 54.2 0.8 29 27-56 1-29 (151)
70 PRK11860 bifunctional 3-phosph 97.4 5.8E-05 1.2E-09 66.9 1.2 38 24-64 444-481 (661)
71 COG0563 Adk Adenylate kinase a 97.4 9.6E-05 2.1E-09 56.0 2.2 30 25-55 3-32 (178)
72 PRK00081 coaE dephospho-CoA ki 97.4 0.00016 3.5E-09 54.5 3.4 31 25-57 5-35 (194)
73 PLN02200 adenylate kinase fami 97.4 0.00012 2.5E-09 57.4 2.6 31 25-56 46-76 (234)
74 PRK01184 hypothetical protein; 97.4 0.00013 2.9E-09 53.4 2.7 29 25-55 4-32 (184)
75 TIGR00017 cmk cytidylate kinas 97.4 8.5E-05 1.8E-09 57.7 1.6 37 24-63 4-40 (217)
76 PRK06696 uridine kinase; Valid 97.3 0.00012 2.6E-09 56.0 2.2 40 18-58 19-62 (223)
77 PRK10078 ribose 1,5-bisphospho 97.3 0.00025 5.5E-09 52.6 3.9 31 25-56 5-35 (186)
78 cd00227 CPT Chloramphenicol (C 97.3 0.00012 2.6E-09 53.8 2.1 33 25-57 5-38 (175)
79 cd00544 CobU Adenosylcobinamid 97.3 0.00018 3.8E-09 54.1 3.1 66 25-105 2-68 (169)
80 PRK14730 coaE dephospho-CoA ki 97.3 0.00018 4E-09 54.6 3.0 36 25-61 4-41 (195)
81 PRK00625 shikimate kinase; Pro 97.3 0.00016 3.5E-09 54.4 2.6 32 25-57 3-34 (173)
82 cd02022 DPCK Dephospho-coenzym 97.3 0.00022 4.8E-09 52.8 3.3 31 25-57 2-32 (179)
83 cd02025 PanK Pantothenate kina 97.3 0.00053 1.1E-08 53.1 5.3 66 26-105 3-75 (220)
84 PF00448 SRP54: SRP54-type pro 97.3 0.00023 4.9E-09 54.5 3.1 32 25-57 4-40 (196)
85 PF06414 Zeta_toxin: Zeta toxi 97.3 0.0002 4.4E-09 53.7 2.7 34 26-59 19-54 (199)
86 PRK12339 2-phosphoglycerate ki 97.3 0.0002 4.3E-09 55.0 2.7 33 25-57 6-38 (197)
87 TIGR00390 hslU ATP-dependent p 97.2 0.00024 5.2E-09 61.5 3.3 36 24-60 49-84 (441)
88 COG0396 sufC Cysteine desulfur 97.2 0.0017 3.6E-08 52.8 7.9 83 15-106 26-110 (251)
89 PRK05201 hslU ATP-dependent pr 97.2 0.00019 4E-09 62.2 2.4 36 24-60 52-87 (443)
90 PRK08356 hypothetical protein; 97.2 0.00044 9.6E-09 51.8 4.2 37 16-57 2-38 (195)
91 PHA00729 NTP-binding motif con 97.2 0.00019 4.1E-09 57.1 2.1 26 22-47 17-42 (226)
92 PRK14738 gmk guanylate kinase; 97.2 0.00035 7.6E-09 53.1 3.3 50 25-84 16-65 (206)
93 TIGR02640 gas_vesic_GvpN gas v 97.2 0.00032 6.9E-09 55.3 3.1 31 25-55 24-55 (262)
94 cd02019 NK Nucleoside/nucleoti 97.2 0.00039 8.4E-09 44.6 3.0 38 25-65 2-42 (69)
95 PRK05342 clpX ATP-dependent pr 97.2 0.00024 5.1E-09 60.4 2.5 34 24-58 110-143 (412)
96 TIGR00235 udk uridine kinase. 97.2 0.00031 6.6E-09 53.0 2.8 32 25-57 9-43 (207)
97 TIGR00382 clpX endopeptidase C 97.2 0.00032 6.9E-09 59.9 3.1 32 24-56 118-149 (413)
98 PF06068 TIP49: TIP49 C-termin 97.1 0.00026 5.6E-09 60.6 2.5 35 25-60 53-89 (398)
99 cd03115 SRP The signal recogni 97.1 0.0013 2.9E-08 47.7 5.8 32 25-57 3-39 (173)
100 TIGR02322 phosphon_PhnN phosph 97.1 0.00033 7.1E-09 51.0 2.5 23 25-47 4-26 (179)
101 COG0194 Gmk Guanylate kinase [ 97.1 0.00044 9.5E-09 54.2 3.3 50 25-85 7-56 (191)
102 PRK13948 shikimate kinase; Pro 97.1 0.00043 9.3E-09 52.7 3.1 31 25-56 13-43 (182)
103 cd01131 PilT Pilus retraction 97.1 0.00029 6.3E-09 53.3 2.2 23 25-47 4-26 (198)
104 PRK13477 bifunctional pantoate 97.1 0.00039 8.5E-09 60.9 3.2 37 25-64 287-323 (512)
105 PRK07667 uridine kinase; Provi 97.1 0.00032 6.9E-09 52.8 2.3 40 16-57 12-56 (193)
106 TIGR00152 dephospho-CoA kinase 97.1 0.00042 9.1E-09 51.4 2.9 37 25-62 2-40 (188)
107 COG1102 Cmk Cytidylate kinase 97.1 0.00034 7.4E-09 54.3 2.4 29 25-54 3-31 (179)
108 PRK05541 adenylylsulfate kinas 97.1 0.00023 5E-09 51.9 1.4 23 25-47 10-32 (176)
109 cd02027 APSK Adenosine 5'-phos 97.1 0.00028 6.1E-09 51.2 1.8 33 25-58 2-39 (149)
110 PRK12338 hypothetical protein; 97.1 0.0004 8.6E-09 57.7 2.7 34 24-57 6-39 (319)
111 TIGR03574 selen_PSTK L-seryl-t 97.0 0.0003 6.6E-09 54.4 1.8 32 25-57 2-38 (249)
112 PF02283 CobU: Cobinamide kina 97.0 0.00034 7.3E-09 52.7 1.9 39 25-75 1-39 (167)
113 COG0542 clpA ATP-binding subun 97.0 0.00033 7.2E-09 64.2 2.1 25 23-47 522-546 (786)
114 COG1493 HprK Serine kinase of 97.0 0.00074 1.6E-08 56.2 3.8 67 24-92 147-214 (308)
115 PRK09825 idnK D-gluconate kina 97.0 0.00086 1.9E-08 50.2 3.8 31 26-57 7-37 (176)
116 PRK04040 adenylate kinase; Pro 97.0 0.00054 1.2E-08 52.0 2.6 33 24-57 4-38 (188)
117 cd01124 KaiC KaiC is a circadi 96.9 0.00058 1.3E-08 49.3 2.5 21 24-44 1-21 (187)
118 PRK15453 phosphoribulokinase; 96.9 0.0013 2.9E-08 54.2 4.7 60 25-89 8-72 (290)
119 PF07475 Hpr_kinase_C: HPr Ser 96.9 0.00019 4.2E-09 55.2 -0.1 45 24-70 20-65 (171)
120 PRK14526 adenylate kinase; Pro 96.9 0.00059 1.3E-08 52.8 2.6 32 25-57 3-34 (211)
121 PRK13808 adenylate kinase; Pro 96.9 0.00051 1.1E-08 57.3 2.3 32 25-57 3-34 (333)
122 PRK08903 DnaA regulatory inact 96.9 0.00052 1.1E-08 52.0 2.1 23 24-46 44-66 (227)
123 PLN02772 guanylate kinase 96.9 0.00098 2.1E-08 57.1 3.9 60 16-84 129-188 (398)
124 TIGR00554 panK_bact pantothena 96.9 0.0017 3.7E-08 53.0 5.1 67 25-105 65-138 (290)
125 COG1224 TIP49 DNA helicase TIP 96.9 0.00051 1.1E-08 59.2 2.1 24 24-47 67-90 (450)
126 KOG0745|consensus 96.9 0.00068 1.5E-08 59.7 2.7 37 25-62 229-265 (564)
127 PRK05428 HPr kinase/phosphoryl 96.9 0.00063 1.4E-08 56.4 2.4 74 23-98 147-221 (308)
128 PRK14731 coaE dephospho-CoA ki 96.9 0.0011 2.5E-08 50.5 3.5 29 25-55 8-36 (208)
129 TIGR02639 ClpA ATP-dependent C 96.8 0.00087 1.9E-08 60.1 3.2 27 24-50 486-512 (731)
130 PLN02674 adenylate kinase 96.8 0.00072 1.5E-08 54.0 2.4 33 24-57 33-65 (244)
131 PRK13851 type IV secretion sys 96.8 0.00089 1.9E-08 55.8 3.1 26 23-48 163-188 (344)
132 PRK13975 thymidylate kinase; P 96.8 0.00088 1.9E-08 49.2 2.7 26 25-50 5-30 (196)
133 PRK11545 gntK gluconate kinase 96.8 0.00069 1.5E-08 49.9 2.1 29 28-57 1-29 (163)
134 PRK14722 flhF flagellar biosyn 96.8 0.0018 3.9E-08 54.8 4.9 65 19-87 137-225 (374)
135 TIGR00679 hpr-ser Hpr(Ser) kin 96.8 0.00073 1.6E-08 56.0 2.4 74 23-98 147-221 (304)
136 cd01120 RecA-like_NTPases RecA 96.8 0.00093 2E-08 45.9 2.5 22 25-46 2-23 (165)
137 PF13401 AAA_22: AAA domain; P 96.8 0.00069 1.5E-08 46.1 1.8 22 25-46 7-28 (131)
138 PRK06620 hypothetical protein; 96.8 0.0014 2.9E-08 50.7 3.5 30 23-53 45-74 (214)
139 TIGR01650 PD_CobS cobaltochela 96.8 0.00082 1.8E-08 56.1 2.4 33 25-57 67-100 (327)
140 PLN02199 shikimate kinase 96.8 0.00089 1.9E-08 55.5 2.4 33 24-57 104-136 (303)
141 PRK00889 adenylylsulfate kinas 96.7 0.00087 1.9E-08 48.8 2.1 32 25-57 7-43 (175)
142 PRK11034 clpA ATP-dependent Cl 96.7 0.0011 2.3E-08 60.4 3.1 36 16-55 485-520 (758)
143 TIGR02782 TrbB_P P-type conjug 96.7 0.00093 2E-08 54.2 2.4 24 23-46 133-156 (299)
144 PRK14734 coaE dephospho-CoA ki 96.7 0.0016 3.5E-08 49.6 3.5 58 25-91 4-63 (200)
145 cd01130 VirB11-like_ATPase Typ 96.7 0.0013 2.9E-08 48.9 3.0 22 25-46 28-49 (186)
146 PF00437 T2SE: Type II/IV secr 96.7 0.00091 2E-08 52.0 2.1 25 23-47 128-152 (270)
147 TIGR00635 ruvB Holliday juncti 96.7 0.0011 2.4E-08 52.1 2.6 27 24-50 32-58 (305)
148 COG1341 Predicted GTPase or GT 96.7 0.0044 9.6E-08 53.2 6.3 82 24-111 75-171 (398)
149 PF07931 CPT: Chloramphenicol 96.7 0.00089 1.9E-08 51.0 1.8 33 25-57 4-37 (174)
150 PRK05439 pantothenate kinase; 96.7 0.0034 7.5E-08 51.8 5.2 67 25-105 89-162 (311)
151 COG0283 Cmk Cytidylate kinase 96.7 0.001 2.2E-08 53.2 2.0 41 23-66 5-45 (222)
152 TIGR03420 DnaA_homol_Hda DnaA 96.6 0.0014 3.1E-08 48.8 2.6 23 24-46 40-62 (226)
153 TIGR01663 PNK-3'Pase polynucle 96.6 0.0015 3.2E-08 57.4 3.0 35 25-60 372-406 (526)
154 smart00763 AAA_PrkA PrkA AAA d 96.6 0.0012 2.7E-08 55.7 2.4 29 17-48 76-104 (361)
155 PRK00080 ruvB Holliday junctio 96.6 0.0013 2.8E-08 53.0 2.3 29 22-50 51-79 (328)
156 cd00820 PEPCK_HprK Phosphoenol 96.6 0.0029 6.3E-08 45.0 3.8 36 16-57 12-47 (107)
157 PLN02318 phosphoribulokinase/u 96.6 0.0022 4.7E-08 58.0 3.9 43 13-57 57-100 (656)
158 PF01695 IstB_IS21: IstB-like 96.6 0.0016 3.4E-08 49.0 2.6 22 24-45 49-70 (178)
159 COG2074 2-phosphoglycerate kin 96.6 0.0012 2.7E-08 54.5 2.1 33 25-57 92-124 (299)
160 cd00046 DEXDc DEAD-like helica 96.6 0.0018 4E-08 42.3 2.6 22 25-46 3-24 (144)
161 PRK13900 type IV secretion sys 96.6 0.0016 3.4E-08 53.8 2.7 25 24-48 162-186 (332)
162 PRK14732 coaE dephospho-CoA ki 96.6 0.0021 4.5E-08 49.1 3.2 31 25-57 2-32 (196)
163 TIGR03499 FlhF flagellar biosy 96.6 0.0017 3.7E-08 52.0 2.8 31 25-56 197-234 (282)
164 TIGR02524 dot_icm_DotB Dot/Icm 96.6 0.0012 2.5E-08 55.2 1.9 22 25-46 137-158 (358)
165 PRK00023 cmk cytidylate kinase 96.6 0.0012 2.7E-08 51.2 1.9 36 24-62 6-41 (225)
166 COG4185 Uncharacterized protei 96.6 0.0007 1.5E-08 52.8 0.5 33 25-57 5-38 (187)
167 PRK14733 coaE dephospho-CoA ki 96.6 0.0025 5.4E-08 49.6 3.5 32 25-57 9-40 (204)
168 PRK00149 dnaA chromosomal repl 96.6 0.00095 2.1E-08 56.2 1.3 30 17-46 143-172 (450)
169 PF05496 RuvB_N: Holliday junc 96.6 0.0021 4.7E-08 51.6 3.2 35 20-54 48-83 (233)
170 PF04851 ResIII: Type III rest 96.5 0.0011 2.5E-08 46.6 1.4 35 25-59 28-62 (184)
171 PRK06526 transposase; Provisio 96.5 0.0018 3.8E-08 51.6 2.6 22 24-45 100-121 (254)
172 COG1220 HslU ATP-dependent pro 96.5 0.0017 3.7E-08 55.9 2.5 26 25-50 53-78 (444)
173 TIGR01420 pilT_fam pilus retra 96.5 0.0017 3.7E-08 53.2 2.4 22 25-46 125-146 (343)
174 PRK14529 adenylate kinase; Pro 96.5 0.0015 3.2E-08 51.5 1.9 29 25-54 3-31 (223)
175 COG4619 ABC-type uncharacteriz 96.5 0.0028 6.2E-08 50.3 3.4 42 24-71 31-73 (223)
176 PRK14961 DNA polymerase III su 96.5 0.0018 3.8E-08 53.4 2.4 29 20-48 36-64 (363)
177 cd01672 TMPK Thymidine monopho 96.5 0.0014 3.1E-08 47.1 1.6 23 25-47 3-25 (200)
178 PRK07429 phosphoribulokinase; 96.5 0.0033 7.2E-08 51.9 3.9 37 19-57 6-45 (327)
179 cd02026 PRK Phosphoribulokinas 96.5 0.0026 5.7E-08 51.0 3.2 31 25-56 2-35 (273)
180 TIGR02788 VirB11 P-type DNA tr 96.4 0.0026 5.6E-08 51.4 3.1 24 24-47 146-169 (308)
181 TIGR02881 spore_V_K stage V sp 96.4 0.0015 3.2E-08 51.1 1.7 24 22-45 42-65 (261)
182 PRK03333 coaE dephospho-CoA ki 96.4 0.0023 4.9E-08 53.8 2.9 35 25-61 4-40 (395)
183 PRK03992 proteasome-activating 96.4 0.002 4.3E-08 53.8 2.5 27 24-50 167-193 (389)
184 PRK12377 putative replication 96.4 0.0015 3.3E-08 52.0 1.7 23 24-46 103-125 (248)
185 TIGR01242 26Sp45 26S proteasom 96.4 0.0021 4.6E-08 52.6 2.6 27 24-50 158-184 (364)
186 PHA02244 ATPase-like protein 96.4 0.002 4.2E-08 55.0 2.4 26 25-50 122-147 (383)
187 cd00984 DnaB_C DnaB helicase C 96.4 0.003 6.5E-08 47.8 3.2 25 17-44 11-35 (242)
188 PRK12723 flagellar biosynthesi 96.4 0.0029 6.3E-08 53.6 3.4 78 26-106 178-281 (388)
189 PRK13833 conjugal transfer pro 96.4 0.0021 4.6E-08 53.2 2.5 23 24-46 146-168 (323)
190 PRK09087 hypothetical protein; 96.4 0.0028 6E-08 49.3 3.0 29 26-55 48-76 (226)
191 KOG3347|consensus 96.4 0.0023 5E-08 49.5 2.5 51 24-75 9-63 (176)
192 TIGR03015 pepcterm_ATPase puta 96.4 0.0027 5.7E-08 48.6 2.8 22 26-47 47-68 (269)
193 PF13521 AAA_28: AAA domain; P 96.4 0.0022 4.8E-08 46.2 2.2 25 25-50 2-26 (163)
194 PF08477 Miro: Miro-like prote 96.4 0.0028 6.1E-08 42.4 2.6 23 25-47 2-24 (119)
195 COG0703 AroK Shikimate kinase 96.4 0.0022 4.7E-08 49.3 2.3 26 25-50 5-30 (172)
196 PRK12402 replication factor C 96.4 0.0021 4.5E-08 50.6 2.2 23 25-47 39-61 (337)
197 TIGR00362 DnaA chromosomal rep 96.4 0.0015 3.4E-08 54.0 1.5 29 18-46 132-160 (405)
198 PRK11889 flhF flagellar biosyn 96.4 0.0033 7.1E-08 54.5 3.5 32 25-57 244-280 (436)
199 PRK09518 bifunctional cytidyla 96.4 0.0017 3.8E-08 58.0 1.9 39 24-65 3-41 (712)
200 TIGR02525 plasmid_TraJ plasmid 96.4 0.0017 3.7E-08 54.6 1.7 22 25-46 152-173 (372)
201 cd04163 Era Era subfamily. Er 96.4 0.0034 7.3E-08 42.6 2.9 23 24-46 5-27 (168)
202 TIGR01425 SRP54_euk signal rec 96.4 0.0037 8.1E-08 53.8 3.8 32 25-57 103-139 (429)
203 PF01121 CoaE: Dephospho-CoA k 96.4 0.0031 6.6E-08 47.9 2.9 61 25-95 3-66 (180)
204 PF00910 RNA_helicase: RNA hel 96.4 0.0016 3.5E-08 44.7 1.3 57 26-89 2-61 (107)
205 PRK06893 DNA replication initi 96.4 0.0029 6.3E-08 48.8 2.8 21 25-45 42-62 (229)
206 PRK06921 hypothetical protein; 96.3 0.0021 4.6E-08 51.3 2.0 25 22-46 117-141 (266)
207 PRK13894 conjugal transfer ATP 96.3 0.0026 5.7E-08 52.3 2.6 22 24-45 150-171 (319)
208 TIGR02237 recomb_radB DNA repa 96.3 0.0036 7.9E-08 46.6 3.2 23 19-44 12-34 (209)
209 PRK08727 hypothetical protein; 96.3 0.0026 5.6E-08 49.3 2.5 25 21-45 40-64 (233)
210 PRK00698 tmk thymidylate kinas 96.3 0.0018 4E-08 47.5 1.6 23 25-47 6-28 (205)
211 PRK13342 recombination factor 96.3 0.0027 5.9E-08 53.0 2.7 27 24-50 38-64 (413)
212 PRK14256 phosphate ABC transpo 96.3 0.022 4.7E-07 43.8 7.5 28 16-46 27-54 (252)
213 PLN02348 phosphoribulokinase 96.3 0.0029 6.3E-08 54.1 2.8 31 17-48 45-75 (395)
214 cd03292 ABC_FtsE_transporter F 96.3 0.015 3.3E-07 43.3 6.4 33 15-50 23-58 (214)
215 CHL00195 ycf46 Ycf46; Provisio 96.3 0.0025 5.4E-08 55.4 2.4 37 24-61 261-297 (489)
216 TIGR00041 DTMP_kinase thymidyl 96.3 0.0017 3.8E-08 47.6 1.2 24 25-48 6-29 (195)
217 PTZ00451 dephospho-CoA kinase; 96.3 0.0036 7.9E-08 49.9 2.9 36 25-61 4-41 (244)
218 TIGR01241 FtsH_fam ATP-depende 96.3 0.0032 6.9E-08 53.8 2.8 31 24-55 90-120 (495)
219 PRK12724 flagellar biosynthesi 96.2 0.0025 5.5E-08 55.1 2.1 31 25-56 226-262 (432)
220 PF13173 AAA_14: AAA domain 96.2 0.0038 8.3E-08 43.7 2.7 37 25-61 5-44 (128)
221 COG2087 CobU Adenosyl cobinami 96.2 0.0024 5.2E-08 49.5 1.8 47 24-82 2-49 (175)
222 PRK13951 bifunctional shikimat 96.2 0.004 8.8E-08 53.9 3.3 33 24-57 2-34 (488)
223 PRK08154 anaerobic benzoate ca 96.2 0.0035 7.7E-08 50.7 2.8 30 25-55 136-165 (309)
224 cd01129 PulE-GspE PulE/GspE Th 96.2 0.0033 7.2E-08 50.0 2.6 22 25-46 83-104 (264)
225 TIGR00064 ftsY signal recognit 96.2 0.0048 1E-07 49.5 3.4 30 26-56 76-110 (272)
226 PRK04195 replication factor C 96.2 0.0039 8.5E-08 53.2 3.1 29 22-50 39-67 (482)
227 PLN03025 replication factor C 96.2 0.0026 5.5E-08 51.2 1.8 24 25-48 37-60 (319)
228 PRK13764 ATPase; Provisional 96.2 0.0025 5.5E-08 56.9 2.0 24 24-47 259-282 (602)
229 PRK05642 DNA replication initi 96.2 0.0033 7.1E-08 48.9 2.3 78 22-110 45-128 (234)
230 PRK03846 adenylylsulfate kinas 96.2 0.0037 8E-08 46.9 2.5 22 25-46 27-48 (198)
231 PRK08084 DNA replication initi 96.2 0.0037 8.1E-08 48.5 2.6 23 24-46 47-69 (235)
232 PF12846 AAA_10: AAA-like doma 96.2 0.0043 9.3E-08 47.1 2.8 37 25-62 4-43 (304)
233 PRK06761 hypothetical protein; 96.2 0.0039 8.5E-08 50.9 2.7 31 25-56 6-36 (282)
234 TIGR00455 apsK adenylylsulfate 96.2 0.0031 6.7E-08 46.4 2.0 32 26-57 22-57 (184)
235 PRK10867 signal recognition pa 96.2 0.0048 1E-07 53.0 3.4 31 25-56 103-139 (433)
236 PRK06835 DNA replication prote 96.2 0.0024 5.2E-08 52.8 1.5 23 24-46 185-207 (329)
237 cd02029 PRK_like Phosphoribulo 96.2 0.003 6.4E-08 51.9 2.0 36 25-61 2-42 (277)
238 PF13191 AAA_16: AAA ATPase do 96.1 0.0036 7.8E-08 44.6 2.2 24 23-46 25-48 (185)
239 PF05729 NACHT: NACHT domain 96.1 0.0027 5.9E-08 44.1 1.5 22 25-46 3-24 (166)
240 PRK14955 DNA polymerase III su 96.1 0.0031 6.7E-08 52.6 2.1 27 23-49 39-65 (397)
241 PRK08181 transposase; Validate 96.1 0.004 8.7E-08 50.2 2.6 20 25-44 109-128 (269)
242 PRK10416 signal recognition pa 96.1 0.0077 1.7E-07 49.5 4.3 36 18-57 113-153 (318)
243 PRK09183 transposase/IS protei 96.1 0.0041 9E-08 49.3 2.7 20 25-44 105-124 (259)
244 PF00005 ABC_tran: ABC transpo 96.1 0.006 1.3E-07 42.1 3.1 27 18-47 10-36 (137)
245 cd01673 dNK Deoxyribonucleosid 96.1 0.0038 8.3E-08 45.9 2.3 26 25-50 2-27 (193)
246 KOG0741|consensus 96.1 0.0046 1E-07 55.8 3.1 37 22-59 538-577 (744)
247 KOG1942|consensus 96.1 0.0037 8.1E-08 53.3 2.3 25 24-48 66-90 (456)
248 PHA02544 44 clamp loader, smal 96.1 0.0043 9.3E-08 49.0 2.5 36 21-56 42-78 (316)
249 cd03262 ABC_HisP_GlnQ_permease 96.1 0.031 6.8E-07 41.6 7.0 33 15-50 22-57 (213)
250 PRK08099 bifunctional DNA-bind 96.1 0.0046 9.9E-08 52.3 2.7 25 25-49 222-246 (399)
251 PF00308 Bac_DnaA: Bacterial d 96.1 0.0039 8.5E-08 48.1 2.1 92 17-111 29-129 (219)
252 TIGR00972 3a0107s01c2 phosphat 96.0 0.035 7.6E-07 42.6 7.4 27 17-46 25-51 (247)
253 PRK09493 glnQ glutamine ABC tr 96.0 0.029 6.4E-07 42.7 6.9 33 15-50 23-58 (240)
254 CHL00095 clpC Clp protease ATP 96.0 0.0044 9.6E-08 56.3 2.7 24 24-47 541-564 (821)
255 PRK12726 flagellar biosynthesi 96.0 0.0085 1.9E-07 51.6 4.3 39 17-59 204-247 (407)
256 PF13555 AAA_29: P-loop contai 96.0 0.0063 1.4E-07 39.6 2.7 16 25-40 26-41 (62)
257 cd03233 ABC_PDR_domain1 The pl 96.0 0.032 6.9E-07 41.9 6.9 28 16-46 30-57 (202)
258 PF06745 KaiC: KaiC; InterPro 96.0 0.0057 1.2E-07 46.3 2.8 81 25-108 22-114 (226)
259 PTZ00361 26 proteosome regulat 96.0 0.0053 1.1E-07 52.8 2.9 27 24-50 219-245 (438)
260 TIGR03345 VI_ClpV1 type VI sec 96.0 0.0042 9.1E-08 57.1 2.4 28 16-46 593-620 (852)
261 cd03229 ABC_Class3 This class 96.0 0.027 6E-07 41.3 6.4 34 15-51 22-58 (178)
262 cd01394 radB RadB. The archaea 96.0 0.007 1.5E-07 45.4 3.2 24 19-45 19-42 (218)
263 PLN02422 dephospho-CoA kinase 96.0 0.0067 1.4E-07 48.2 3.2 35 25-61 4-40 (232)
264 TIGR03346 chaperone_ClpB ATP-d 96.0 0.0063 1.4E-07 55.7 3.3 27 17-46 593-619 (852)
265 PRK09270 nucleoside triphospha 95.9 0.0045 9.7E-08 47.5 2.0 23 25-47 36-58 (229)
266 PRK14247 phosphate ABC transpo 95.9 0.011 2.5E-07 45.3 4.2 27 17-46 27-53 (250)
267 TIGR00231 small_GTP small GTP- 95.9 0.0073 1.6E-07 40.2 2.8 23 24-46 3-25 (161)
268 PRK14956 DNA polymerase III su 95.9 0.0056 1.2E-07 53.6 2.8 27 23-49 41-67 (484)
269 PRK14962 DNA polymerase III su 95.9 0.005 1.1E-07 53.2 2.4 28 21-48 35-62 (472)
270 PF04548 AIG1: AIG1 family; I 95.9 0.0073 1.6E-07 46.0 3.0 23 23-45 1-23 (212)
271 PRK08116 hypothetical protein; 95.9 0.0041 9E-08 49.6 1.7 23 24-46 116-138 (268)
272 PF04665 Pox_A32: Poxvirus A32 95.9 0.0083 1.8E-07 48.1 3.4 56 24-89 15-71 (241)
273 cd03224 ABC_TM1139_LivF_branch 95.9 0.0075 1.6E-07 45.2 3.0 33 15-50 22-57 (222)
274 COG1484 DnaC DNA replication p 95.9 0.004 8.7E-08 49.5 1.6 75 24-99 107-191 (254)
275 PRK10865 protein disaggregatio 95.9 0.0056 1.2E-07 56.2 2.7 23 24-46 600-622 (857)
276 PRK09984 phosphonate/organopho 95.9 0.013 2.7E-07 45.5 4.3 27 17-46 28-54 (262)
277 COG0470 HolB ATPase involved i 95.9 0.0043 9.3E-08 48.2 1.7 26 24-49 26-51 (325)
278 TIGR02880 cbbX_cfxQ probable R 95.9 0.0059 1.3E-07 49.0 2.4 23 24-46 60-82 (284)
279 PF00270 DEAD: DEAD/DEAH box h 95.9 0.0068 1.5E-07 42.6 2.5 16 25-40 17-32 (169)
280 TIGR02639 ClpA ATP-dependent C 95.9 0.0073 1.6E-07 54.2 3.3 24 23-46 204-227 (731)
281 PLN02459 probable adenylate ki 95.9 0.007 1.5E-07 49.1 2.9 40 12-56 23-62 (261)
282 PRK14257 phosphate ABC transpo 95.8 0.013 2.8E-07 48.0 4.4 27 17-46 106-132 (329)
283 PRK14958 DNA polymerase III su 95.8 0.0054 1.2E-07 53.4 2.3 26 24-49 40-65 (509)
284 PLN02842 nucleotide kinase 95.8 0.0045 9.7E-08 54.4 1.8 30 26-56 1-30 (505)
285 cd01123 Rad51_DMC1_radA Rad51_ 95.8 0.0089 1.9E-07 45.0 3.2 23 18-43 18-40 (235)
286 PRK12269 bifunctional cytidyla 95.8 0.0065 1.4E-07 56.3 2.9 38 24-64 36-73 (863)
287 cd04138 H_N_K_Ras_like H-Ras/N 95.8 0.0078 1.7E-07 41.4 2.6 22 24-45 3-24 (162)
288 PRK14270 phosphate ABC transpo 95.8 0.046 1E-06 42.0 7.2 27 16-45 27-53 (251)
289 COG1428 Deoxynucleoside kinase 95.8 0.0068 1.5E-07 48.3 2.6 28 23-50 5-32 (216)
290 PRK05703 flhF flagellar biosyn 95.8 0.0063 1.4E-07 51.8 2.6 32 25-57 224-262 (424)
291 cd01860 Rab5_related Rab5-rela 95.8 0.0082 1.8E-07 41.8 2.7 22 24-45 3-24 (163)
292 COG0419 SbcC ATPase involved i 95.8 0.0067 1.5E-07 55.5 2.9 24 17-43 23-48 (908)
293 PRK14262 phosphate ABC transpo 95.8 0.042 9E-07 42.2 6.8 26 16-44 26-51 (250)
294 PTZ00454 26S protease regulato 95.8 0.008 1.7E-07 50.8 3.1 27 24-50 181-207 (398)
295 PRK10744 pstB phosphate transp 95.8 0.046 1E-06 42.4 7.1 26 17-45 37-62 (260)
296 PRK14267 phosphate ABC transpo 95.8 0.058 1.3E-06 41.4 7.6 27 17-46 28-54 (253)
297 cd04119 RJL RJL (RabJ-Like) su 95.8 0.0092 2E-07 41.2 2.8 23 24-46 2-24 (168)
298 PRK12727 flagellar biosynthesi 95.8 0.009 2E-07 53.2 3.4 36 19-58 350-392 (559)
299 PRK00771 signal recognition pa 95.8 0.01 2.2E-07 51.1 3.6 32 25-57 98-134 (437)
300 CHL00181 cbbX CbbX; Provisiona 95.8 0.0073 1.6E-07 48.7 2.6 23 24-46 61-83 (287)
301 COG1419 FlhF Flagellar GTP-bin 95.7 0.0094 2E-07 51.3 3.4 67 18-88 202-292 (407)
302 PRK14244 phosphate ABC transpo 95.7 0.014 3.1E-07 44.8 4.1 27 16-45 28-54 (251)
303 KOG0744|consensus 95.7 0.0073 1.6E-07 51.8 2.6 21 26-46 181-201 (423)
304 PRK14088 dnaA chromosomal repl 95.7 0.0072 1.6E-07 51.4 2.6 24 22-45 130-153 (440)
305 PRK14969 DNA polymerase III su 95.7 0.0065 1.4E-07 53.0 2.4 26 24-49 40-65 (527)
306 PRK14248 phosphate ABC transpo 95.7 0.048 1E-06 42.5 7.0 25 17-44 45-69 (268)
307 PF03215 Rad17: Rad17 cell cyc 95.7 0.0076 1.6E-07 52.9 2.8 25 26-50 49-73 (519)
308 PRK14241 phosphate transporter 95.7 0.061 1.3E-06 41.6 7.5 28 16-46 27-54 (258)
309 PRK06645 DNA polymerase III su 95.7 0.0065 1.4E-07 53.1 2.4 26 24-49 45-70 (507)
310 cd01122 GP4d_helicase GP4d_hel 95.7 0.0098 2.1E-07 45.9 3.1 26 17-45 28-53 (271)
311 PRK10436 hypothetical protein; 95.7 0.0068 1.5E-07 52.4 2.4 21 25-45 221-241 (462)
312 TIGR02538 type_IV_pilB type IV 95.7 0.0068 1.5E-07 53.1 2.5 22 25-46 319-340 (564)
313 PRK14272 phosphate ABC transpo 95.7 0.07 1.5E-06 40.9 7.8 27 17-46 28-54 (252)
314 TIGR02533 type_II_gspE general 95.7 0.0079 1.7E-07 52.1 2.8 23 25-47 245-267 (486)
315 PRK05973 replicative DNA helic 95.7 0.0083 1.8E-07 47.8 2.7 24 18-44 63-86 (237)
316 COG4088 Predicted nucleotide k 95.7 0.0036 7.8E-08 50.8 0.6 26 25-50 4-29 (261)
317 cd04136 Rap_like Rap-like subf 95.7 0.0095 2.1E-07 41.3 2.7 22 24-45 3-24 (163)
318 COG2805 PilT Tfp pilus assembl 95.7 0.0053 1.1E-07 51.9 1.6 15 25-39 128-142 (353)
319 PRK07952 DNA replication prote 95.7 0.0057 1.2E-07 48.7 1.7 65 24-89 101-174 (244)
320 PF01926 MMR_HSR1: 50S ribosom 95.7 0.014 3.1E-07 39.4 3.5 21 25-45 2-22 (116)
321 KOG3308|consensus 95.7 0.0079 1.7E-07 48.2 2.5 35 25-62 7-42 (225)
322 PRK09361 radB DNA repair and r 95.7 0.0094 2E-07 45.0 2.8 23 19-44 23-45 (225)
323 TIGR03878 thermo_KaiC_2 KaiC d 95.7 0.0089 1.9E-07 47.2 2.8 20 25-44 39-58 (259)
324 TIGR02868 CydC thiol reductant 95.7 0.014 3.1E-07 49.5 4.2 34 17-53 359-395 (529)
325 cd01876 YihA_EngB The YihA (En 95.7 0.0091 2E-07 40.7 2.5 20 25-44 2-21 (170)
326 PF13481 AAA_25: AAA domain; P 95.7 0.011 2.4E-07 43.0 3.0 23 19-44 32-54 (193)
327 TIGR02236 recomb_radA DNA repa 95.7 0.0096 2.1E-07 47.5 2.9 20 26-45 99-118 (310)
328 COG0630 VirB11 Type IV secreto 95.7 0.0079 1.7E-07 49.2 2.5 24 24-47 145-168 (312)
329 TIGR00750 lao LAO/AO transport 95.6 0.04 8.7E-07 44.3 6.5 32 26-58 38-74 (300)
330 TIGR01243 CDC48 AAA family ATP 95.6 0.0093 2E-07 53.4 3.1 31 23-54 488-518 (733)
331 PRK12422 chromosomal replicati 95.6 0.0059 1.3E-07 52.3 1.8 29 18-46 137-165 (445)
332 cd01983 Fer4_NifH The Fer4_Nif 95.6 0.01 2.2E-07 37.3 2.4 65 25-91 2-71 (99)
333 COG0464 SpoVK ATPases of the A 95.6 0.011 2.5E-07 50.0 3.4 33 24-57 278-310 (494)
334 cd03114 ArgK-like The function 95.6 0.022 4.9E-07 41.5 4.5 31 25-56 2-37 (148)
335 PF03796 DnaB_C: DnaB-like hel 95.6 0.011 2.4E-07 45.9 3.1 25 17-44 17-41 (259)
336 PRK14237 phosphate transporter 95.6 0.016 3.5E-07 45.3 4.0 27 17-46 44-70 (267)
337 COG2256 MGS1 ATPase related to 95.6 0.01 2.3E-07 51.4 3.2 32 23-54 49-81 (436)
338 PF01580 FtsK_SpoIIIE: FtsK/Sp 95.6 0.026 5.6E-07 42.1 4.9 33 24-57 40-79 (205)
339 COG1936 Predicted nucleotide k 95.6 0.01 2.2E-07 46.2 2.8 25 25-50 3-27 (180)
340 cd02030 NDUO42 NADH:Ubiquinone 95.6 0.0088 1.9E-07 45.8 2.5 26 25-50 2-27 (219)
341 cd03301 ABC_MalK_N The N-termi 95.6 0.012 2.6E-07 43.9 3.1 31 17-50 24-57 (213)
342 COG0714 MoxR-like ATPases [Gen 95.6 0.0099 2.1E-07 48.0 2.8 25 25-49 46-70 (329)
343 TIGR01243 CDC48 AAA family ATP 95.6 0.0093 2E-07 53.4 2.9 31 24-55 214-244 (733)
344 PRK04296 thymidine kinase; Pro 95.6 0.007 1.5E-07 45.5 1.8 22 25-46 5-26 (190)
345 cd03215 ABC_Carb_Monos_II This 95.6 0.022 4.8E-07 41.9 4.5 31 17-50 24-57 (182)
346 TIGR03881 KaiC_arch_4 KaiC dom 95.6 0.01 2.3E-07 44.8 2.8 19 25-43 23-41 (229)
347 cd03256 ABC_PhnC_transporter A 95.6 0.011 2.4E-07 44.8 3.0 33 15-50 23-58 (241)
348 TIGR03864 PQQ_ABC_ATP ABC tran 95.6 0.012 2.6E-07 44.9 3.1 31 17-50 25-58 (236)
349 PRK14251 phosphate ABC transpo 95.6 0.019 4.1E-07 44.0 4.2 26 17-45 28-53 (251)
350 PRK07940 DNA polymerase III su 95.6 0.0075 1.6E-07 51.0 2.1 29 21-49 35-63 (394)
351 PRK13407 bchI magnesium chelat 95.6 0.013 2.7E-07 48.8 3.4 66 25-90 32-110 (334)
352 PF13245 AAA_19: Part of AAA d 95.6 0.007 1.5E-07 40.0 1.6 19 27-45 15-33 (76)
353 cd01393 recA_like RecA is a b 95.6 0.012 2.5E-07 44.2 2.9 25 18-45 18-42 (226)
354 PF08433 KTI12: Chromatin asso 95.6 0.006 1.3E-07 49.1 1.5 33 25-58 4-41 (270)
355 cd03247 ABCC_cytochrome_bd The 95.6 0.013 2.8E-07 43.0 3.1 32 16-50 25-59 (178)
356 PF00931 NB-ARC: NB-ARC domain 95.6 0.01 2.2E-07 45.5 2.7 21 25-45 22-42 (287)
357 PRK05537 bifunctional sulfate 95.6 0.0084 1.8E-07 52.9 2.5 36 25-63 395-436 (568)
358 PF10662 PduV-EutP: Ethanolami 95.6 0.0098 2.1E-07 44.4 2.4 21 25-45 4-24 (143)
359 PRK14261 phosphate ABC transpo 95.6 0.019 4.1E-07 44.2 4.1 26 16-44 29-54 (253)
360 PRK14255 phosphate ABC transpo 95.5 0.019 4.1E-07 44.1 4.1 27 16-45 28-54 (252)
361 cd03258 ABC_MetN_methionine_tr 95.5 0.012 2.6E-07 44.6 3.0 32 16-50 28-62 (233)
362 TIGR00678 holB DNA polymerase 95.5 0.0083 1.8E-07 44.2 2.0 26 24-49 16-41 (188)
363 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.5 0.012 2.6E-07 44.0 2.9 33 15-50 26-61 (218)
364 PRK14249 phosphate ABC transpo 95.5 0.021 4.6E-07 43.9 4.3 27 17-46 28-54 (251)
365 PRK14721 flhF flagellar biosyn 95.5 0.012 2.6E-07 50.5 3.2 63 19-85 191-277 (420)
366 TIGR02315 ABC_phnC phosphonate 95.5 0.012 2.7E-07 44.7 3.0 33 15-50 24-59 (243)
367 PRK14957 DNA polymerase III su 95.5 0.0081 1.8E-07 53.0 2.2 26 23-48 39-64 (546)
368 cd03265 ABC_DrrA DrrA is the A 95.5 0.013 2.8E-07 44.2 3.0 33 15-50 22-57 (220)
369 cd03225 ABC_cobalt_CbiO_domain 95.5 0.014 3E-07 43.5 3.1 31 17-50 25-58 (211)
370 PRK13541 cytochrome c biogenes 95.5 0.014 3E-07 43.4 3.1 31 17-50 24-57 (195)
371 PRK09111 DNA polymerase III su 95.5 0.0099 2.1E-07 52.9 2.7 26 24-49 48-73 (598)
372 TIGR02928 orc1/cdc6 family rep 95.5 0.007 1.5E-07 48.5 1.6 23 24-46 42-64 (365)
373 TIGR01166 cbiO cobalt transpor 95.5 0.013 2.9E-07 43.1 2.9 33 15-50 14-49 (190)
374 PRK11784 tRNA 2-selenouridine 95.5 0.015 3.3E-07 48.5 3.6 48 25-74 144-194 (345)
375 PRK14273 phosphate ABC transpo 95.5 0.076 1.6E-06 40.9 7.3 27 17-46 31-57 (254)
376 PF13479 AAA_24: AAA domain 95.5 0.015 3.2E-07 44.4 3.3 30 23-56 4-33 (213)
377 PRK14964 DNA polymerase III su 95.5 0.0081 1.7E-07 52.5 2.0 25 24-48 37-61 (491)
378 cd00880 Era_like Era (E. coli 95.5 0.009 1.9E-07 39.7 1.8 20 27-46 1-20 (163)
379 PRK00411 cdc6 cell division co 95.5 0.0098 2.1E-07 48.2 2.4 23 24-46 57-79 (394)
380 TIGR02204 MsbA_rel ABC transpo 95.5 0.018 3.9E-07 49.1 4.1 36 15-53 362-400 (576)
381 TIGR00959 ffh signal recogniti 95.5 0.015 3.2E-07 50.0 3.5 31 25-56 102-138 (428)
382 cd03261 ABC_Org_Solvent_Resist 95.5 0.014 3E-07 44.4 3.1 33 15-50 22-57 (235)
383 cd00267 ABC_ATPase ABC (ATP-bi 95.5 0.017 3.6E-07 41.4 3.3 30 14-46 20-49 (157)
384 PRK13341 recombination factor 95.5 0.0099 2.1E-07 54.0 2.6 27 24-50 54-80 (725)
385 cd04159 Arl10_like Arl10-like 95.5 0.013 2.8E-07 39.7 2.6 21 25-45 2-22 (159)
386 PRK10584 putative ABC transpor 95.4 0.014 3.1E-07 44.0 3.1 31 17-50 34-67 (228)
387 PF12775 AAA_7: P-loop contain 95.4 0.013 2.7E-07 47.1 2.9 24 25-48 36-59 (272)
388 COG1618 Predicted nucleotide k 95.4 0.0085 1.9E-07 46.6 1.9 24 23-46 6-29 (179)
389 cd03269 ABC_putative_ATPase Th 95.4 0.014 3.1E-07 43.5 3.0 31 17-50 24-57 (210)
390 PRK14949 DNA polymerase III su 95.4 0.01 2.2E-07 55.6 2.7 29 21-49 37-65 (944)
391 cd03260 ABC_PstB_phosphate_tra 95.4 0.015 3.2E-07 43.9 3.1 29 15-46 22-50 (227)
392 cd01867 Rab8_Rab10_Rab13_like 95.4 0.015 3.2E-07 41.3 2.9 25 21-45 2-26 (167)
393 TIGR00176 mobB molybdopterin-g 95.4 0.008 1.7E-07 44.4 1.6 22 25-46 2-23 (155)
394 PHA02624 large T antigen; Prov 95.4 0.013 2.7E-07 53.1 3.1 47 13-62 424-474 (647)
395 cd03226 ABC_cobalt_CbiO_domain 95.4 0.014 3E-07 43.6 2.8 32 16-50 23-57 (205)
396 TIGR02397 dnaX_nterm DNA polym 95.4 0.012 2.7E-07 46.8 2.7 31 15-48 32-62 (355)
397 PLN02796 D-glycerate 3-kinase 95.4 0.012 2.7E-07 49.5 2.9 33 25-58 103-140 (347)
398 CHL00176 ftsH cell division pr 95.4 0.011 2.5E-07 52.9 2.8 32 24-56 218-249 (638)
399 TIGR01587 cas3_core CRISPR-ass 95.4 0.011 2.5E-07 47.2 2.5 19 25-43 2-20 (358)
400 TIGR00960 3a0501s02 Type II (G 95.4 0.015 3.3E-07 43.5 3.1 31 17-50 27-60 (216)
401 cd03279 ABC_sbcCD SbcCD and ot 95.4 0.021 4.5E-07 43.3 3.8 34 9-45 18-51 (213)
402 cd04110 Rab35 Rab35 subfamily. 95.4 0.019 4.2E-07 42.6 3.6 23 23-45 7-29 (199)
403 PRK11124 artP arginine transpo 95.4 0.015 3.1E-07 44.5 3.0 32 16-50 25-59 (242)
404 smart00173 RAS Ras subfamily o 95.4 0.014 3E-07 40.8 2.7 21 25-45 3-23 (164)
405 cd01870 RhoA_like RhoA-like su 95.4 0.014 3.1E-07 41.2 2.7 23 24-46 3-25 (175)
406 cd03293 ABC_NrtD_SsuB_transpor 95.4 0.015 3.2E-07 43.8 2.9 31 17-50 28-61 (220)
407 PRK14954 DNA polymerase III su 95.4 0.0096 2.1E-07 53.3 2.2 31 19-49 35-65 (620)
408 cd04139 RalA_RalB RalA/RalB su 95.4 0.015 3.2E-07 40.2 2.7 20 25-44 3-22 (164)
409 COG1136 SalX ABC-type antimicr 95.4 0.064 1.4E-06 42.8 6.6 63 27-99 36-105 (226)
410 PRK10247 putative ABC transpor 95.4 0.016 3.5E-07 44.0 3.1 32 16-50 30-64 (225)
411 PRK14960 DNA polymerase III su 95.4 0.011 2.3E-07 54.0 2.4 25 24-48 39-63 (702)
412 PRK09473 oppD oligopeptide tra 95.4 0.044 9.5E-07 44.8 5.8 27 17-46 40-66 (330)
413 COG0237 CoaE Dephospho-CoA kin 95.3 0.018 3.9E-07 44.7 3.4 63 25-96 5-69 (201)
414 COG1132 MdlB ABC-type multidru 95.3 0.022 4.8E-07 48.9 4.2 33 17-52 353-388 (567)
415 PRK13768 GTPase; Provisional 95.3 0.02 4.2E-07 45.2 3.6 33 24-57 4-41 (253)
416 TIGR02673 FtsE cell division A 95.3 0.016 3.5E-07 43.3 3.0 31 17-50 26-59 (214)
417 cd01868 Rab11_like Rab11-like. 95.3 0.018 3.8E-07 40.4 3.0 23 23-45 4-26 (165)
418 PRK14269 phosphate ABC transpo 95.3 0.016 3.6E-07 44.5 3.1 28 15-45 24-51 (246)
419 PRK10908 cell division protein 95.3 0.017 3.7E-07 43.5 3.1 33 15-50 24-59 (222)
420 TIGR03608 L_ocin_972_ABC putat 95.3 0.017 3.6E-07 42.8 3.0 31 17-50 22-55 (206)
421 cd00876 Ras Ras family. The R 95.3 0.016 3.4E-07 39.7 2.7 21 25-45 2-22 (160)
422 KOG3354|consensus 95.3 0.011 2.4E-07 46.1 2.1 32 25-57 15-46 (191)
423 cd03296 ABC_CysA_sulfate_impor 95.3 0.016 3.4E-07 44.3 2.9 32 16-50 25-59 (239)
424 PRK14087 dnaA chromosomal repl 95.3 0.0081 1.8E-07 51.4 1.5 44 18-62 137-185 (450)
425 PRK10418 nikD nickel transport 95.3 0.028 6.2E-07 43.4 4.4 27 16-45 26-52 (254)
426 TIGR01189 ccmA heme ABC export 95.3 0.018 3.9E-07 42.8 3.2 31 17-50 24-57 (198)
427 cd03263 ABC_subfamily_A The AB 95.3 0.018 3.8E-07 43.2 3.1 31 17-50 26-59 (220)
428 PRK11331 5-methylcytosine-spec 95.3 0.011 2.3E-07 51.6 2.2 25 25-49 197-221 (459)
429 TIGR03877 thermo_KaiC_1 KaiC d 95.3 0.015 3.2E-07 44.9 2.8 20 25-44 24-43 (237)
430 TIGR01526 nadR_NMN_Atrans nico 95.3 0.013 2.9E-07 47.9 2.7 27 24-50 164-190 (325)
431 TIGR01618 phage_P_loop phage n 95.3 0.016 3.5E-07 45.7 3.0 29 25-56 15-43 (220)
432 PRK08939 primosomal protein Dn 95.3 0.0094 2E-07 48.7 1.7 23 24-46 158-180 (306)
433 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 95.3 0.021 4.6E-07 40.1 3.3 23 23-45 3-25 (166)
434 cd03268 ABC_BcrA_bacitracin_re 95.3 0.018 4E-07 42.8 3.1 31 17-50 24-57 (208)
435 cd03246 ABCC_Protease_Secretio 95.3 0.018 4E-07 42.1 3.0 31 17-50 26-59 (173)
436 cd03264 ABC_drug_resistance_li 95.3 0.025 5.5E-07 42.2 3.9 24 27-50 30-56 (211)
437 PRK08691 DNA polymerase III su 95.3 0.012 2.7E-07 53.6 2.5 27 23-49 39-65 (709)
438 PRK05896 DNA polymerase III su 95.3 0.011 2.3E-07 53.1 2.1 26 23-48 39-64 (605)
439 cd04101 RabL4 RabL4 (Rab-like4 95.3 0.016 3.4E-07 40.5 2.6 21 24-44 2-22 (164)
440 cd03218 ABC_YhbG The ABC trans 95.3 0.017 3.8E-07 43.6 3.0 33 15-50 22-57 (232)
441 cd04155 Arl3 Arl3 subfamily. 95.3 0.017 3.6E-07 40.8 2.7 22 24-45 16-37 (173)
442 cd03237 ABC_RNaseL_inhibitor_d 95.2 0.027 5.8E-07 44.1 4.1 39 9-50 13-56 (246)
443 PRK14021 bifunctional shikimat 95.2 0.015 3.2E-07 50.8 2.9 34 18-56 6-39 (542)
444 TIGR02211 LolD_lipo_ex lipopro 95.2 0.019 4E-07 43.1 3.1 33 15-50 27-62 (221)
445 PRK14240 phosphate transporter 95.2 0.095 2.1E-06 40.2 7.1 26 16-44 26-51 (250)
446 cd04135 Tc10 TC10 subfamily. 95.2 0.017 3.8E-07 40.8 2.8 22 24-45 2-23 (174)
447 cd03245 ABCC_bacteriocin_expor 95.2 0.019 4.1E-07 43.0 3.1 31 17-50 28-61 (220)
448 PRK14236 phosphate transporter 95.2 0.1 2.2E-06 40.9 7.4 26 17-45 49-74 (272)
449 cd03235 ABC_Metallic_Cations A 95.2 0.017 3.7E-07 43.2 2.8 33 15-50 21-56 (213)
450 cd03223 ABCD_peroxisomal_ALDP 95.2 0.02 4.3E-07 41.9 3.1 34 16-52 24-60 (166)
451 PF00158 Sigma54_activat: Sigm 95.2 0.025 5.4E-07 42.3 3.7 35 23-57 23-61 (168)
452 PRK14238 phosphate transporter 95.2 0.089 1.9E-06 41.3 6.9 28 16-46 47-74 (271)
453 cd03219 ABC_Mj1267_LivG_branch 95.2 0.018 3.8E-07 43.7 2.9 33 15-50 22-57 (236)
454 TIGR00150 HI0065_YjeE ATPase, 95.2 0.019 4.2E-07 42.1 3.0 36 26-61 26-64 (133)
455 TIGR03410 urea_trans_UrtE urea 95.2 0.018 3.9E-07 43.5 2.9 33 15-50 22-57 (230)
456 cd03259 ABC_Carb_Solutes_like 95.2 0.019 4.1E-07 42.9 3.0 31 17-50 24-57 (213)
457 TIGR02858 spore_III_AA stage I 95.2 0.021 4.5E-07 46.1 3.4 26 22-47 111-136 (270)
458 PRK11300 livG leucine/isoleuci 95.2 0.019 4.2E-07 44.0 3.1 31 17-50 29-62 (255)
459 PRK05707 DNA polymerase III su 95.2 0.011 2.4E-07 48.7 1.9 30 19-48 19-48 (328)
460 cd04160 Arfrp1 Arfrp1 subfamil 95.2 0.015 3.2E-07 40.7 2.3 21 25-45 2-22 (167)
461 PF03029 ATP_bind_1: Conserved 95.2 0.017 3.6E-07 45.5 2.8 32 27-59 1-37 (238)
462 PRK14253 phosphate ABC transpo 95.2 0.02 4.3E-07 43.9 3.1 26 17-45 27-52 (249)
463 cd03251 ABCC_MsbA MsbA is an e 95.2 0.02 4.3E-07 43.3 3.1 31 17-50 26-59 (234)
464 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.2 0.02 4.2E-07 41.2 2.9 31 17-50 24-57 (144)
465 PRK11264 putative amino-acid A 95.2 0.02 4.4E-07 43.8 3.1 31 17-50 27-60 (250)
466 cd03244 ABCC_MRP_domain2 Domai 95.1 0.021 4.5E-07 42.8 3.1 31 17-50 28-61 (221)
467 PRK14963 DNA polymerase III su 95.1 0.012 2.5E-07 51.3 2.0 26 23-48 37-62 (504)
468 TIGR01277 thiQ thiamine ABC tr 95.1 0.02 4.3E-07 43.0 3.0 33 15-50 20-55 (213)
469 cd03254 ABCC_Glucan_exporter_l 95.1 0.019 4.2E-07 43.2 2.9 35 15-52 25-62 (229)
470 PRK06995 flhF flagellar biosyn 95.1 0.015 3.2E-07 50.9 2.6 34 20-57 257-297 (484)
471 PRK11629 lolD lipoprotein tran 95.1 0.019 4.2E-07 43.6 2.9 32 16-50 32-66 (233)
472 PRK14242 phosphate transporter 95.1 0.019 4E-07 44.2 2.8 25 17-44 30-54 (253)
473 cd03228 ABCC_MRP_Like The MRP 95.1 0.022 4.8E-07 41.5 3.1 31 17-50 26-59 (171)
474 PRK14250 phosphate ABC transpo 95.1 0.021 4.5E-07 43.9 3.1 31 17-50 27-60 (241)
475 PRK14268 phosphate ABC transpo 95.1 0.11 2.3E-06 40.3 7.1 28 15-45 34-61 (258)
476 cd04145 M_R_Ras_like M-Ras/R-R 95.1 0.022 4.7E-07 39.6 2.9 23 23-45 3-25 (164)
477 PF13476 AAA_23: AAA domain; P 95.1 0.017 3.6E-07 41.4 2.4 21 26-46 23-43 (202)
478 PRK11176 lipid transporter ATP 95.1 0.028 6E-07 48.2 4.1 33 18-53 368-403 (582)
479 TIGR03771 anch_rpt_ABC anchore 95.1 0.038 8.2E-07 42.0 4.5 34 17-53 4-40 (223)
480 PF01583 APS_kinase: Adenylyls 95.1 0.01 2.2E-07 44.7 1.3 38 25-63 5-45 (156)
481 cd03234 ABCG_White The White s 95.1 0.022 4.8E-07 43.1 3.2 26 17-45 31-56 (226)
482 TIGR01184 ntrCD nitrate transp 95.1 0.021 4.6E-07 43.6 3.1 31 17-50 9-42 (230)
483 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.1 0.02 4.3E-07 43.5 2.9 33 15-50 25-60 (238)
484 PF13086 AAA_11: AAA domain; P 95.1 0.019 4.1E-07 41.7 2.7 21 25-45 20-40 (236)
485 cd01865 Rab3 Rab3 subfamily. 95.1 0.024 5.2E-07 40.1 3.1 23 24-46 3-25 (165)
486 PRK09112 DNA polymerase III su 95.1 0.013 2.9E-07 48.7 2.1 25 24-48 47-71 (351)
487 cd00983 recA RecA is a bacter 95.1 0.019 4E-07 47.9 2.9 29 26-55 59-90 (325)
488 PRK14263 phosphate ABC transpo 95.1 0.1 2.3E-06 40.8 7.0 29 15-46 30-58 (261)
489 PRK15455 PrkA family serine pr 95.1 0.013 2.9E-07 52.9 2.1 29 17-48 101-129 (644)
490 TIGR02528 EutP ethanolamine ut 95.1 0.02 4.4E-07 39.3 2.6 22 25-46 3-24 (142)
491 cd03298 ABC_ThiQ_thiamine_tran 95.1 0.023 5E-07 42.4 3.1 32 16-50 21-55 (211)
492 PRK14974 cell division protein 95.1 0.024 5.2E-07 47.2 3.5 31 25-56 143-178 (336)
493 PF01935 DUF87: Domain of unkn 95.1 0.012 2.6E-07 44.5 1.6 39 25-64 26-68 (229)
494 PLN00020 ribulose bisphosphate 95.0 0.0099 2.1E-07 51.3 1.2 53 8-61 134-186 (413)
495 cd03230 ABC_DR_subfamily_A Thi 95.0 0.024 5.1E-07 41.5 3.1 31 17-50 24-57 (173)
496 TIGR03880 KaiC_arch_3 KaiC dom 95.0 0.02 4.3E-07 43.3 2.8 23 19-44 16-38 (224)
497 TIGR03598 GTPase_YsxC ribosome 95.0 0.019 4.2E-07 41.7 2.6 34 11-45 8-41 (179)
498 COG2804 PulE Type II secretory 95.0 0.017 3.7E-07 50.9 2.7 30 16-48 255-284 (500)
499 cd03214 ABC_Iron-Siderophores_ 95.0 0.024 5.2E-07 41.7 3.1 31 17-50 23-56 (180)
500 TIGR02324 CP_lyasePhnL phospho 95.0 0.023 5.1E-07 42.7 3.1 35 15-52 30-67 (224)
No 1
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=100.00 E-value=1.1e-39 Score=265.06 Aligned_cols=86 Identities=23% Similarity=0.269 Sum_probs=83.4
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCceecCCCCHHHhcCCCeeeecccCCCCccCHHHHHHHHHHH
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLLDFLDPNTRFTVVDYRNRALKH 104 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLid~ldp~e~ySv~~F~~~A~~~ 104 (115)
++|+||||||||+||++||++ ++|| ||||||||||+|||||||||.+|+++|||||||+++|+++|||++|+++|.++
T Consensus 7 i~I~GpTasGKS~LAl~LA~~-~~eI-IsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~f~~~a~~~ 84 (300)
T PRK14729 7 VFIFGPTAVGKSNILFHFPKG-KAEI-INVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGIFYKEALKI 84 (300)
T ss_pred EEEECCCccCHHHHHHHHHHh-CCcE-EeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCceeHHHHHHHHHHH
Confidence 468999999999999999999 7899 99999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhhcc
Q psy7554 105 TGLKVDLT 112 (115)
Q Consensus 105 I~~i~~~~ 112 (115)
|++++++.
T Consensus 85 i~~i~~~g 92 (300)
T PRK14729 85 IKELRQQK 92 (300)
T ss_pred HHHHHHCC
Confidence 99999885
No 2
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-39 Score=263.75 Aligned_cols=87 Identities=25% Similarity=0.347 Sum_probs=84.7
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCceecCCCCHHHhcCCCeeeecccCCCCccCHHHHHHHHHHH
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLLDFLDPNTRFTVVDYRNRALKH 104 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLid~ldp~e~ySv~~F~~~A~~~ 104 (115)
++|+||||||||+||++||+++|+|| ||+|||||||||||||||||.+|+++|||||||+++|.|.|||++|.++|.++
T Consensus 6 i~I~GPTAsGKT~lai~LAk~~~~eI-Is~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e~ysa~~f~~~a~~~ 84 (308)
T COG0324 6 IVIAGPTASGKTALAIALAKRLGGEI-ISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTESYSAAEFQRDALAA 84 (308)
T ss_pred EEEECCCCcCHHHHHHHHHHHcCCcE-EecchhhhcCCCcccCCCCCHHHHcCCCEEEecccCccccccHHHHHHHHHHH
Confidence 56799999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhhcc
Q psy7554 105 TGLKVDLT 112 (115)
Q Consensus 105 I~~i~~~~ 112 (115)
|+++.+|.
T Consensus 85 i~~i~~rg 92 (308)
T COG0324 85 IDDILARG 92 (308)
T ss_pred HHHHHhCC
Confidence 99999873
No 3
>PLN02748 tRNA dimethylallyltransferase
Probab=100.00 E-value=5.1e-36 Score=255.61 Aligned_cols=87 Identities=31% Similarity=0.439 Sum_probs=84.7
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCceecCCCCHHHhcCCCeeeecccCCCCccCHHHHHHHHHHH
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLLDFLDPNTRFTVVDYRNRALKH 104 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLid~ldp~e~ySv~~F~~~A~~~ 104 (115)
++|+||||||||+||++||+.++++| ||+|||||||||||||||||.+|+++|||||||+++|+++|||++|+++|.++
T Consensus 25 i~i~GptgsGKs~la~~la~~~~~ei-i~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv~~F~~~A~~~ 103 (468)
T PLN02748 25 VVVMGPTGSGKSKLAVDLASHFPVEI-INADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTAKDFRDHAVPL 103 (468)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCeeE-EcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcHHHHHHHHHHH
Confidence 45899999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhhcc
Q psy7554 105 TGLKVDLT 112 (115)
Q Consensus 105 I~~i~~~~ 112 (115)
|++|++|.
T Consensus 104 I~~I~~rg 111 (468)
T PLN02748 104 IEEILSRN 111 (468)
T ss_pred HHHHHhcC
Confidence 99999884
No 4
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=100.00 E-value=1.9e-33 Score=227.24 Aligned_cols=87 Identities=28% Similarity=0.409 Sum_probs=84.7
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCceecCCCCHHHhcCCCeeeecccCCCCccCHHHHHHHHHHH
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLLDFLDPNTRFTVVDYRNRALKH 104 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLid~ldp~e~ySv~~F~~~A~~~ 104 (115)
++|+||||||||+||.+||+.++++| ||+|||||||+||||||||+++|+++|||||+|+++|++.|||++|.++|.++
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~i-is~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~~~~v~~f~~~a~~~ 80 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEI-ISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSESYSAADFQTLALNA 80 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcE-EEechhheeeeccccCCCCCHHHHcCccEEEEEEechhheEcHHHHHHHHHHH
Confidence 57899999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhhcc
Q psy7554 105 TGLKVDLT 112 (115)
Q Consensus 105 I~~i~~~~ 112 (115)
|++++++.
T Consensus 81 i~~~~~~g 88 (287)
T TIGR00174 81 IADITARG 88 (287)
T ss_pred HHHHHhCC
Confidence 99998863
No 5
>PLN02840 tRNA dimethylallyltransferase
Probab=99.97 E-value=1.5e-32 Score=232.06 Aligned_cols=87 Identities=23% Similarity=0.307 Sum_probs=84.9
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCceecCCCCHHHhcCCCeeeecccCCCCccCHHHHHHHHHHH
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLLDFLDPNTRFTVVDYRNRALKH 104 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLid~ldp~e~ySv~~F~~~A~~~ 104 (115)
++|+||||||||+||.+||++++++| ||+|||||||+|+||||||+.+|+++|||||||+++|+++|||++|.++|.++
T Consensus 24 i~I~GptgsGKTtla~~La~~~~~~i-is~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e~ySv~~F~~~A~~~ 102 (421)
T PLN02840 24 IVISGPTGAGKSRLALELAKRLNGEI-ISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSDDYSVGAFFDDARRA 102 (421)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCe-EeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCCceeHHHHHHHHHHH
Confidence 56899999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhhcc
Q psy7554 105 TGLKVDLT 112 (115)
Q Consensus 105 I~~i~~~~ 112 (115)
|+++++|.
T Consensus 103 I~~i~~rg 110 (421)
T PLN02840 103 TQDILNRG 110 (421)
T ss_pred HHHHHhcC
Confidence 99999874
No 6
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=99.97 E-value=2.5e-32 Score=221.84 Aligned_cols=87 Identities=29% Similarity=0.427 Sum_probs=84.3
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCceecCCCCHHHhcCCCeeeecccCCCCccCHHHHHHHHHHH
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLLDFLDPNTRFTVVDYRNRALKH 104 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLid~ldp~e~ySv~~F~~~A~~~ 104 (115)
++|+||||||||+||.+||+.++++| ||+|||||||+||||||||+++|+++|||||+|+++|++.||+++|.++|.+.
T Consensus 7 i~i~GptgsGKt~la~~la~~~~~~i-is~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~a~~~ 85 (307)
T PRK00091 7 IVIVGPTASGKTALAIELAKRLNGEI-ISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRDALAA 85 (307)
T ss_pred EEEECCCCcCHHHHHHHHHHhCCCcE-EeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHHHHHH
Confidence 45899999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhhcc
Q psy7554 105 TGLKVDLT 112 (115)
Q Consensus 105 I~~i~~~~ 112 (115)
|++++++.
T Consensus 86 i~~i~~~g 93 (307)
T PRK00091 86 IADILARG 93 (307)
T ss_pred HHHHHhCC
Confidence 99998763
No 7
>KOG1384|consensus
Probab=99.97 E-value=2.3e-32 Score=225.99 Aligned_cols=91 Identities=29% Similarity=0.375 Sum_probs=87.0
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCceecCCCCHHHhcCCCeeeecccCCCCccCHHHH
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLLDFLDPNTRFTVVDY 97 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLid~ldp~e~ySv~~F 97 (115)
|+-|.. |.||||||||.||++||.+|++|| ||+|+||||||++|+|||+|.+|+.+|||||+|+++|+.+||+++|
T Consensus 6 k~KVvv---I~G~TGsGKSrLaVdLA~rf~~EI-INsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F 81 (348)
T KOG1384|consen 6 KDKVVV---IMGATGAGKSRLAVDLATRFPGEI-INSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEF 81 (348)
T ss_pred CceEEE---EecCCCCChhhhHHHHHHhCCcee-ecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHH
Confidence 455544 999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcc
Q psy7554 98 RNRALKHTGLKVDLT 112 (115)
Q Consensus 98 ~~~A~~~I~~i~~~~ 112 (115)
.++|..+|++|++|.
T Consensus 82 ~~~a~~aie~I~~rg 96 (348)
T KOG1384|consen 82 EDDASRAIEEIHSRG 96 (348)
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999999999974
No 8
>PLN02165 adenylate isopentenyltransferase
Probab=99.97 E-value=6.7e-31 Score=216.75 Aligned_cols=103 Identities=24% Similarity=0.296 Sum_probs=97.2
Q ss_pred ccceeeeeccCCCceeEeeeeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCceecCCCCHHHhcCCCeeeecc
Q psy7554 6 ATHYQVNLLTGTPDQVYLSYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLLDF 85 (115)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLid~ 85 (115)
.+|-|+..+-.++..++. |+||||||||+||++||+.++++| ||+|||||||||||+||||+.+|++++||||+|+
T Consensus 30 ~~~~~~~~~~~~~g~iiv---IiGPTGSGKStLA~~LA~~l~~eI-IsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~ 105 (334)
T PLN02165 30 VTMTSVAMEQNCKDKVVV---IMGATGSGKSRLSVDLATRFPSEI-INSDKMQVYDGLKITTNQITIQDRRGVPHHLLGE 105 (334)
T ss_pred ccccccccccCCCCCEEE---EECCCCCcHHHHHHHHHHHcCCce-ecCChheeECCcccccCCCCHHHHcCCChhhhhe
Confidence 478889888888888655 899999999999999999999999 9999999999999999999999999999999999
Q ss_pred cCCCC-ccCHHHHHHHHHHHHhhhhhcc
Q psy7554 86 LDPNT-RFTVVDYRNRALKHTGLKVDLT 112 (115)
Q Consensus 86 ldp~e-~ySv~~F~~~A~~~I~~i~~~~ 112 (115)
++|.+ .||+++|.+++.++|++++++.
T Consensus 106 ~~~~~~~~sv~~F~~~a~~~I~~i~~~~ 133 (334)
T PLN02165 106 LNPDDGELTASEFRSLASLSISEITSRQ 133 (334)
T ss_pred eccccceeeHHHHHHHHHHHHHHHHHCC
Confidence 99997 8999999999999999998874
No 9
>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....
Probab=99.85 E-value=2.4e-22 Score=159.08 Aligned_cols=56 Identities=39% Similarity=0.707 Sum_probs=44.7
Q ss_pred eeeccCCceecCCCCHHHhcCCCeeeecccCCCCccCHHHHHHHHHHHHhhhhhcc
Q psy7554 57 LMVYKGLDVITNKVTPEEAEGIPHHLLDFLDPNTRFTVVDYRNRALKHTGLKVDLT 112 (115)
Q Consensus 57 mQVYkgldIgTAKPs~eE~~~IpHHLid~ldp~e~ySv~~F~~~A~~~I~~i~~~~ 112 (115)
|||||||||||||||.+|+++|||||||+++|+++|||++|.++|.++|++++++.
T Consensus 1 mQvYr~ldIgTaKps~~e~~~vpHhlid~~~p~e~ysv~~f~~~a~~~i~~i~~rg 56 (253)
T PF01715_consen 1 MQVYRGLDIGTAKPSPEERAGVPHHLIDILDPDEEYSVGDFQRDAREAIEDILARG 56 (253)
T ss_dssp STTBTT-CTTTT---HHHHTTS-EESSS-B-TTS---HHHHHHHHHHHHHHHHHTT
T ss_pred CCccCCCceeeCCCCHHHHcCCCEeeeeeecccCCCCHHHHHHHHHHHHHHHHhcC
Confidence 89999999999999999999999999999999999999999999999999999873
No 10
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=99.79 E-value=4.2e-20 Score=146.64 Aligned_cols=85 Identities=18% Similarity=0.144 Sum_probs=61.8
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCceecCCCCHHHhcCCCeeeecccCCC-CccCHHHHHHHHHH
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLLDFLDPN-TRFTVVDYRNRALK 103 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLid~ldp~-e~ySv~~F~~~A~~ 103 (115)
++|.||||||||++|++||++++++| |++|++|+|.+|+|||+||+++|+++++++++|-.... -.+++.++.+....
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pv-I~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~i~a~ea~~~Li~ 82 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPV-ISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGIINAEEAHERLIS 82 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EE-EEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S--HHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCE-EEecceecccccccccCCCCHHHHcccceeeeccccccCCCcCHHHHHHHHHH
Confidence 34999999999999999999999999 99999999999999999999999999999999988765 56888888888777
Q ss_pred HHhhhhh
Q psy7554 104 HTGLKVD 110 (115)
Q Consensus 104 ~I~~i~~ 110 (115)
.+.+..+
T Consensus 83 ~v~~~~~ 89 (233)
T PF01745_consen 83 EVNSYSA 89 (233)
T ss_dssp HHHTTTT
T ss_pred HHHhccc
Confidence 7766543
No 11
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=99.33 E-value=2.9e-13 Score=110.90 Aligned_cols=78 Identities=10% Similarity=0.010 Sum_probs=68.2
Q ss_pred eeeeeeccCCCchhHHHHHHhcCCCce-Eeeccceee------------------eccCCceecCCCCHHHhcCCCeeee
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGPDLF-CRTYQVYLM------------------VYKGLDVITNKVTPEEAEGIPHHLL 83 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~~~e-I~IsaDSmQ------------------VYkgldIgTAKPs~eE~~~IpHHLi 83 (115)
+.++|+||+|||||++|.+||++++.. + |+.|+++ .|..++++|++|+.++ ||+.
T Consensus 93 ~iIlI~G~sgsGKStlA~~La~~l~~~~v-i~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~-----~~l~ 166 (301)
T PRK04220 93 IIILIGGASGVGTSTIAFELASRLGIRSV-IGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEP-----PVIY 166 (301)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCEE-EechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCch-----hhhh
Confidence 347899999999999999999999987 6 9999999 9999999999999876 9999
Q ss_pred cccCCCCccCHHHHHHHHHHHHhhhhhc
Q psy7554 84 DFLDPNTRFTVVDYRNRALKHTGLKVDL 111 (115)
Q Consensus 84 d~ldp~e~ySv~~F~~~A~~~I~~i~~~ 111 (115)
|++++.+.++++ +...|+.++.+
T Consensus 167 g~~~~~~~v~~g-----i~~~I~~~~~~ 189 (301)
T PRK04220 167 GFERHVEPVSVG-----VEAVIERALKE 189 (301)
T ss_pred hHHHHHHHHHHH-----HHHHHHHHHHh
Confidence 999999998888 55555555443
No 12
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.93 E-value=1.1e-10 Score=83.95 Aligned_cols=62 Identities=18% Similarity=0.187 Sum_probs=48.8
Q ss_pred eeeeccCCCchhHHHHHHhcCCCc---eEeeccceeeeccCCceecCCCCHHHhcCCCeeeecccCCCCccCHHHHH
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDL---FCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLLDFLDPNTRFTVVDYR 98 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~---eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLid~ldp~e~ySv~~F~ 98 (115)
++|+||||||||+|+..|++.++. .+ ++. .|.+|...|..+++||+++..+..+.+..+.|.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~-v~~-----------tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~ 66 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFS-VSH-----------TTRKPRPGEVDGVDYHFVSKEEFERLIENGEFL 66 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceec-ccc-----------cccCCCCCccCCceeEEeCHHHHHHHHHcCCeE
Confidence 468999999999999999998764 33 443 688999999999999999977665554444443
No 13
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.66 E-value=2.6e-09 Score=77.73 Aligned_cols=63 Identities=13% Similarity=0.103 Sum_probs=47.8
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCceecCCCCHHHhcCCCeeeecccCCCCccCHHHH
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLLDFLDPNTRFTVVDY 97 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLid~ldp~e~ySv~~F 97 (115)
++|+||+|||||+|+..|++.++... ++. .+.|.+|...|..+..||+++.-.....+..++|
T Consensus 4 i~l~G~~GsGKsTl~~~L~~~~~~~~-~~~---------~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 66 (180)
T TIGR03263 4 IVISGPSGVGKSTLVKALLEEDPNLK-FSI---------SATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEF 66 (180)
T ss_pred EEEECCCCCCHHHHHHHHHccCcccc-ccc---------cceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCc
Confidence 46899999999999999999876644 332 6788899998999999999875544433333333
No 14
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.58 E-value=4.2e-08 Score=72.82 Aligned_cols=54 Identities=11% Similarity=0.084 Sum_probs=45.7
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCceecCCCCHHHhcCCCeeeecccCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLLDFLDP 88 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLid~ldp 88 (115)
++|+||+|||||+|+..|++.++ . +|..+.+.|.+|...|..+.+||+++.-..
T Consensus 8 i~i~G~sGsGKstl~~~l~~~~~-~---------~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~ 61 (205)
T PRK00300 8 IVLSGPSGAGKSTLVKALLERDP-N---------LQLSVSATTRAPRPGEVDGVDYFFVSKEEF 61 (205)
T ss_pred EEEECCCCCCHHHHHHHHHhhCc-c---------ceeccCccccCCCCCCcCCCeeEEcCHHHH
Confidence 34899999999999999999876 2 477788999999999999999999875443
No 15
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.48 E-value=4.6e-08 Score=73.36 Aligned_cols=48 Identities=17% Similarity=0.055 Sum_probs=41.0
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCceecCCCCHHHh-cCCCeeeec
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVITNKVTPEEA-EGIPHHLLD 84 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~-~~IpHHLid 84 (115)
++|+||+|||||++|.++|++++..+ + -|.|++|..+|+ ++|+||...
T Consensus 4 ili~G~~~sGKS~~a~~l~~~~~~~~-~-----------~iat~~~~~~e~~~ri~~h~~~ 52 (170)
T PRK05800 4 ILVTGGARSGKSRFAERLAAQSGLQV-L-----------YIATAQPFDDEMAARIAHHRQR 52 (170)
T ss_pred EEEECCCCccHHHHHHHHHHHcCCCc-E-----------eCcCCCCChHHHHHHHHHHHhc
Confidence 57899999999999999999887665 3 288999998887 789998774
No 16
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.44 E-value=9.2e-08 Score=65.15 Aligned_cols=31 Identities=6% Similarity=-0.082 Sum_probs=29.5
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
|+|+||+|||||++|.+||+++|..+ ++.|.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~-i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPV-ISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEE-EEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeE-EEecc
Confidence 56999999999999999999999999 99999
No 17
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.29 E-value=8.5e-07 Score=63.81 Aligned_cols=36 Identities=6% Similarity=-0.222 Sum_probs=32.1
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeecc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYK 61 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYk 61 (115)
|+++||+|||||++|..|++.++... ++.|++..+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~-v~~D~~~~~~ 36 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKF-IEGDDLHPAA 36 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeE-EeCccccChH
Confidence 46899999999999999999999988 9999986553
No 18
>PRK07261 topology modulation protein; Provisional
Probab=98.24 E-value=9.3e-07 Score=65.62 Aligned_cols=37 Identities=5% Similarity=-0.253 Sum_probs=33.5
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKG 62 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkg 62 (115)
++|+|++|||||+||..|++.++... ++.|.++...+
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~-i~~D~~~~~~~ 39 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPV-LHLDTLHFQPN 39 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCe-EecCCEEeccc
Confidence 67899999999999999999999999 99999886544
No 19
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.14 E-value=1.2e-06 Score=60.82 Aligned_cols=33 Identities=12% Similarity=0.039 Sum_probs=29.8
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLM 58 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQ 58 (115)
++++||.|||||.++-.|++.++..+ |+.|...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~-i~~D~~~ 34 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVV-ISQDEIR 34 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEE-EEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEE-EeHHHHH
Confidence 56899999999999999999999888 9999843
No 20
>PRK06217 hypothetical protein; Validated
Probab=98.12 E-value=2e-06 Score=63.71 Aligned_cols=33 Identities=6% Similarity=-0.154 Sum_probs=30.4
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLM 58 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQ 58 (115)
|+|+|++|||||+||.+||+.++... ++.|.+-
T Consensus 4 I~i~G~~GsGKSTla~~L~~~l~~~~-~~~D~~~ 36 (183)
T PRK06217 4 IHITGASGSGTTTLGAALAERLDIPH-LDTDDYF 36 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcE-EEcCcee
Confidence 78899999999999999999999999 9999743
No 21
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.07 E-value=1.9e-06 Score=63.67 Aligned_cols=51 Identities=14% Similarity=0.083 Sum_probs=37.6
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCceecCCCCHHHhcCCCeeeec
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLLD 84 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLid 84 (115)
++|+||+||||++|+-.|.+.+...+ .....-.|.+|...|..++.||+++
T Consensus 5 ivl~Gpsg~GK~~l~~~L~~~~~~~~---------~~~v~~TTR~~r~~E~~g~~y~fvs 55 (183)
T PF00625_consen 5 IVLVGPSGSGKSTLAKRLIQEFPDKF---------GRVVSHTTRPPRPGEVDGVDYHFVS 55 (183)
T ss_dssp EEEESSTTSSHHHHHHHHHHHSTTTE---------EEEEEEESS-GGTTS-TTTSEEE--
T ss_pred EEEECCCCCCHHHHHHHHHHhccccc---------ccceeecccCCcccccCCcceEEEe
Confidence 45799999999999999998876533 1234557888888899999999884
No 22
>PRK08118 topology modulation protein; Reviewed
Probab=98.04 E-value=2.6e-06 Score=63.26 Aligned_cols=33 Identities=6% Similarity=-0.110 Sum_probs=30.7
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLM 58 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQ 58 (115)
|+|+||.|||||+||..|++.++... ++.|.+.
T Consensus 4 I~I~G~~GsGKSTlak~L~~~l~~~~-~~lD~l~ 36 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKLNIPV-HHLDALF 36 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCc-eecchhh
Confidence 67899999999999999999999999 9999874
No 23
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.01 E-value=4.2e-06 Score=59.49 Aligned_cols=33 Identities=6% Similarity=-0.312 Sum_probs=29.1
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
.++++||.|||||.+|..||++++... +..|..
T Consensus 6 ~i~l~G~~GsGKstla~~La~~l~~~~-~d~d~~ 38 (175)
T PRK00131 6 NIVLIGFMGAGKSTIGRLLAKRLGYDF-IDTDHL 38 (175)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCE-EEChHH
Confidence 356799999999999999999999888 888764
No 24
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.00 E-value=5.8e-06 Score=58.57 Aligned_cols=32 Identities=6% Similarity=-0.227 Sum_probs=29.1
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
++++||.|||||++|..|++.++... ++.|..
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~-i~~D~~ 33 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPF-IDGDDL 33 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEE-EeCccc
Confidence 56899999999999999999999888 888875
No 25
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.98 E-value=8.9e-06 Score=60.41 Aligned_cols=65 Identities=12% Similarity=-0.090 Sum_probs=44.3
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCceecCCCCHHHhcCCCeeeecccCCCCccCHHHHHHHHHHH
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLLDFLDPNTRFTVVDYRNRALKH 104 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLid~ldp~e~ySv~~F~~~A~~~ 104 (115)
++|+||+|||||.++..||+.++... +..|+. .+++.+. ++-...+.+....|+..-.+.
T Consensus 7 I~liG~~GaGKStl~~~La~~l~~~~-vd~D~~--------------i~~~~g~-----~i~~~~~~~g~~~fr~~e~~~ 66 (172)
T PRK05057 7 IFLVGPMGAGKSTIGRQLAQQLNMEF-YDSDQE--------------IEKRTGA-----DIGWVFDVEGEEGFRDREEKV 66 (172)
T ss_pred EEEECCCCcCHHHHHHHHHHHcCCcE-EECCch--------------HHHHhCc-----CHhHHHHHhCHHHHHHHHHHH
Confidence 56699999999999999999999999 999972 2222211 222223445666777666666
Q ss_pred Hhhhh
Q psy7554 105 TGLKV 109 (115)
Q Consensus 105 I~~i~ 109 (115)
++++.
T Consensus 67 l~~l~ 71 (172)
T PRK05057 67 INELT 71 (172)
T ss_pred HHHHH
Confidence 66543
No 26
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.97 E-value=5e-06 Score=57.70 Aligned_cols=30 Identities=10% Similarity=-0.226 Sum_probs=28.3
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQV 55 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaD 55 (115)
|+|+|++|||||++|..||++++... ++.|
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~-~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPY-LDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCce-eccc
Confidence 57899999999999999999999999 9998
No 27
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.93 E-value=7.7e-06 Score=59.65 Aligned_cols=31 Identities=13% Similarity=-0.123 Sum_probs=28.5
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
++|+||.|||||.+|..||++++... |++|.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~-i~~~~ 32 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPH-ISTGD 32 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE-EECcH
Confidence 67899999999999999999999998 88865
No 28
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.91 E-value=1e-05 Score=61.22 Aligned_cols=50 Identities=12% Similarity=0.073 Sum_probs=41.7
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCceecCCCCHHHhcCCCeeeec
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLLD 84 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLid 84 (115)
++|+||+|||||+|+-.|.+.... + +.-.+..|-+|-+-|..++.||+++
T Consensus 7 ivl~GpsG~GK~tl~~~l~~~~~~-~---------~~~v~~TTR~~r~gE~~G~dY~fvs 56 (186)
T PRK14737 7 FIISSVAGGGKSTIIQALLEEHPD-F---------LFSISCTTRAPRPGDEEGKTYFFLT 56 (186)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCc-c---------ccccCccCCCCCCCCCCCceeEeCC
Confidence 467999999999999999887533 2 3345888999999999999999994
No 29
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.91 E-value=8.7e-06 Score=59.28 Aligned_cols=30 Identities=0% Similarity=-0.207 Sum_probs=27.4
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQV 55 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaD 55 (115)
++|+||.|||||++|..||++++... ||+|
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~-is~~ 31 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTH-LSAG 31 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE-EECC
Confidence 57899999999999999999999888 8874
No 30
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.90 E-value=1.3e-05 Score=52.39 Aligned_cols=26 Identities=12% Similarity=-0.114 Sum_probs=22.5
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCce
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLF 49 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~e 49 (115)
.++|+||+|||||.++..||+.+...
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCC
Confidence 45689999999999999999988653
No 31
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.90 E-value=7.6e-06 Score=57.50 Aligned_cols=33 Identities=9% Similarity=-0.249 Sum_probs=29.7
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
+++++||.|||||++|..||+.++... +++|..
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~-~~~d~~ 33 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPF-VDLDEL 33 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCE-EEchHH
Confidence 477899999999999999999999888 888854
No 32
>PRK03839 putative kinase; Provisional
Probab=97.88 E-value=9.3e-06 Score=59.50 Aligned_cols=39 Identities=5% Similarity=-0.265 Sum_probs=32.7
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCcee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVI 66 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIg 66 (115)
++|+|+.|||||+++..||++++... ++.|. +++...++
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~-id~d~--~~~~~~~~ 41 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEY-VDLTE--FALKKGIG 41 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcE-Eehhh--hhhhcCCc
Confidence 67899999999999999999999999 88884 45554444
No 33
>PRK06547 hypothetical protein; Provisional
Probab=97.86 E-value=1.1e-05 Score=60.71 Aligned_cols=35 Identities=14% Similarity=-0.053 Sum_probs=30.9
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKG 62 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkg 62 (115)
++|.||.|||||.||-.||+.++..+ ++.|+. |+.
T Consensus 18 i~i~G~~GsGKTt~a~~l~~~~~~~~-~~~d~~--~~~ 52 (172)
T PRK06547 18 VLIDGRSGSGKTTLAGALAARTGFQL-VHLDDL--YPG 52 (172)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCe-ecccce--ecc
Confidence 45799999999999999999999888 999984 664
No 34
>PRK14532 adenylate kinase; Provisional
Probab=97.85 E-value=1.1e-05 Score=59.31 Aligned_cols=30 Identities=7% Similarity=-0.016 Sum_probs=27.7
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQV 55 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaD 55 (115)
++++||.|||||++|..||++++... |+.|
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g~~~-is~~ 32 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERGMVQ-LSTG 32 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE-EeCc
Confidence 67899999999999999999999888 8875
No 35
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=97.83 E-value=7.2e-06 Score=71.28 Aligned_cols=39 Identities=10% Similarity=-0.135 Sum_probs=35.4
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccce-eeeccCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY-LMVYKGL 63 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDS-mQVYkgl 63 (115)
++++|++|||||++|.+||.+++...+|+.|+ +++++++
T Consensus 258 il~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~~ 297 (475)
T PRK12337 258 VLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRAM 297 (475)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHhh
Confidence 56899999999999999999999873399999 7999998
No 36
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.77 E-value=1.5e-05 Score=53.95 Aligned_cols=35 Identities=9% Similarity=-0.209 Sum_probs=29.2
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeec
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVY 60 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVY 60 (115)
++|.||.|+|||.++..+|+.++..+ +..|...+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~-~~i~~~~~~ 35 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPF-IEIDGSELI 35 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEE-EEEETTHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhccccc-ccccccccc
Confidence 57899999999999999999999877 665555554
No 37
>PRK13947 shikimate kinase; Provisional
Probab=97.76 E-value=1.9e-05 Score=56.90 Aligned_cols=33 Identities=0% Similarity=-0.350 Sum_probs=29.7
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
+|+|+|+.|||||.+|..||++++... +..|..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~-id~d~~ 35 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGF-IDTDKE 35 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCE-EECchh
Confidence 467899999999999999999999988 888863
No 38
>PRK06762 hypothetical protein; Provisional
Probab=97.75 E-value=1.5e-05 Score=57.38 Aligned_cols=33 Identities=6% Similarity=-0.130 Sum_probs=27.5
Q ss_pred eeeeccCCCchhHHHHHHhcCC--CceEeeccceee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP--DLFCRTYQVYLM 58 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~--~~eI~IsaDSmQ 58 (115)
++|+|+.|||||++|..|++.+ +..+ ++.|.+.
T Consensus 5 i~i~G~~GsGKST~A~~L~~~l~~~~~~-i~~D~~r 39 (166)
T PRK06762 5 IIIRGNSGSGKTTIAKQLQERLGRGTLL-VSQDVVR 39 (166)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeEE-ecHHHHH
Confidence 4689999999999999999998 3445 8888754
No 39
>PRK14530 adenylate kinase; Provisional
Probab=97.74 E-value=2.1e-05 Score=59.67 Aligned_cols=30 Identities=7% Similarity=-0.121 Sum_probs=26.4
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQV 55 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaD 55 (115)
|+|+||+|||||++|..||+.++... |+.|
T Consensus 6 I~i~G~pGsGKsT~~~~La~~~~~~~-i~~g 35 (215)
T PRK14530 6 ILLLGAPGAGKGTQSSNLAEEFGVEH-VTTG 35 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeE-Eecc
Confidence 56799999999999999999999877 6553
No 40
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.73 E-value=1.9e-05 Score=59.71 Aligned_cols=31 Identities=6% Similarity=-0.126 Sum_probs=28.4
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
++|+||.|||||.+|..||++++... |+++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~-is~gd 32 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPH-ISTGD 32 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCe-eehhH
Confidence 67899999999999999999999988 88864
No 41
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.70 E-value=1.8e-05 Score=57.24 Aligned_cols=31 Identities=0% Similarity=-0.246 Sum_probs=27.6
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
++|.||.|||||+++..||+.++... +++|.
T Consensus 6 i~i~G~~GsGKsTl~~~l~~~~g~~~-~~~g~ 36 (188)
T TIGR01360 6 IFIVGGPGSGKGTQCEKIVEKYGFTH-LSTGD 36 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcE-EeHHH
Confidence 56899999999999999999999888 87754
No 42
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.70 E-value=2.4e-05 Score=52.69 Aligned_cols=22 Identities=5% Similarity=-0.221 Sum_probs=20.5
Q ss_pred eeeeccCCCchhHHHHHHhcCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~ 46 (115)
|+|+|++|||||++|.+|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999997
No 43
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.70 E-value=2.5e-05 Score=51.86 Aligned_cols=40 Identities=13% Similarity=0.014 Sum_probs=30.6
Q ss_pred eeeeeccCCCchhHHHHHHhcCC---CceEeeccceeeeccCCc
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGP---DLFCRTYQVYLMVYKGLD 64 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~---~~eI~IsaDSmQVYkgld 64 (115)
+++|.||+|+|||.++..+++.+ +..+ +..|.-+.+....
T Consensus 21 ~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v-~~~~~~~~~~~~~ 63 (151)
T cd00009 21 NLLLYGPPGTGKTTLARAIANELFRPGAPF-LYLNASDLLEGLV 63 (151)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcCCCCe-EEEehhhhhhhhH
Confidence 56689999999999999999887 6666 6666655554433
No 44
>PRK14531 adenylate kinase; Provisional
Probab=97.70 E-value=2.3e-05 Score=58.17 Aligned_cols=31 Identities=13% Similarity=-0.072 Sum_probs=27.6
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
++|+||.|||||++|..||++++... ||++.
T Consensus 5 i~i~G~pGsGKsT~~~~la~~~g~~~-is~gd 35 (183)
T PRK14531 5 LLFLGPPGAGKGTQAARLCAAHGLRH-LSTGD 35 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCe-Eeccc
Confidence 66899999999999999999999888 88733
No 45
>PRK04182 cytidylate kinase; Provisional
Probab=97.69 E-value=2.7e-05 Score=55.82 Aligned_cols=30 Identities=10% Similarity=-0.156 Sum_probs=27.3
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQV 55 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaD 55 (115)
|+|+|++|||||++|..||++++..+ +++|
T Consensus 3 I~i~G~~GsGKstia~~la~~lg~~~-id~~ 32 (180)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLGLKH-VSAG 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcE-ecHH
Confidence 67899999999999999999999988 7764
No 46
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.67 E-value=3e-05 Score=60.74 Aligned_cols=32 Identities=6% Similarity=-0.090 Sum_probs=28.6
Q ss_pred eeeeccCCCchhHHHHHHhcCC-CceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP-DLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~-~~eI~IsaDSm 57 (115)
++++||.|||||++|..|++++ +... |+.|.+
T Consensus 5 iil~G~pGSGKSTla~~L~~~~~~~~~-l~~D~~ 37 (300)
T PHA02530 5 ILTVGVPGSGKSTWAREFAAKNPKAVN-VNRDDL 37 (300)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEE-EeccHH
Confidence 5679999999999999999999 6777 999885
No 47
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.66 E-value=3.3e-05 Score=55.93 Aligned_cols=32 Identities=3% Similarity=-0.168 Sum_probs=28.7
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
++|+|+.|||||.++..||++++... ++.|.+
T Consensus 5 i~~~G~~GsGKst~~~~la~~lg~~~-~d~D~~ 36 (171)
T PRK03731 5 LFLVGARGCGKTTVGMALAQALGYRF-VDTDQW 36 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCE-EEccHH
Confidence 56799999999999999999999988 888853
No 48
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.66 E-value=4.9e-05 Score=56.45 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=39.5
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCceecCCCCHHHhcCCCeeeec
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLLD 84 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLid 84 (115)
++|+||+||||++|+-.|.+.+... +..-..-.|-.|-+.|..++.||+++
T Consensus 5 ivl~Gpsg~GK~tl~~~L~~~~~~~---------~~~~~~~TtR~~r~~e~~g~dy~fvs 55 (184)
T smart00072 5 IVLSGPSGVGKGTLLAELIQEIPDA---------FERVVSHTTRPPRPGEVNGVDYHFVS 55 (184)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcc---------eEeeeeecCCCCCCCCcCCceEEECC
Confidence 5689999999999999998886421 23334556777778888899999874
No 49
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=97.65 E-value=3.5e-05 Score=54.96 Aligned_cols=31 Identities=10% Similarity=-0.180 Sum_probs=28.5
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
+.|+|+.|||||++|..||++++..+ ++.|.
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~-~~~~~ 33 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKL-ISAGD 33 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCce-ecHHH
Confidence 67899999999999999999999999 88863
No 50
>PRK08233 hypothetical protein; Provisional
Probab=97.63 E-value=4.8e-05 Score=54.76 Aligned_cols=32 Identities=9% Similarity=-0.181 Sum_probs=26.0
Q ss_pred eeeeccCCCchhHHHHHHhcCCCc-eEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDL-FCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~-eI~IsaDSm 57 (115)
+.|+|++|||||+||..||+.++. .+ +..|..
T Consensus 6 I~I~G~~GsGKtTla~~L~~~l~~~~~-~~~d~~ 38 (182)
T PRK08233 6 ITIAAVSGGGKTTLTERLTHKLKNSKA-LYFDRY 38 (182)
T ss_pred EEEECCCCCCHHHHHHHHHhhCCCCce-EEECCE
Confidence 568999999999999999999963 44 555554
No 51
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.60 E-value=4.5e-05 Score=57.81 Aligned_cols=31 Identities=3% Similarity=-0.161 Sum_probs=28.3
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
|+|+||.|||||.+|..||++++... ||.+.
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~-is~~d 33 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPH-ISTGD 33 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcE-EECCc
Confidence 67899999999999999999999988 88754
No 52
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.58 E-value=6.9e-05 Score=59.47 Aligned_cols=53 Identities=15% Similarity=0.075 Sum_probs=40.9
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHhcCCCce---EeeccceeeeccCCceecCCCCHHHhcCC
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLTDGPDLF---CRTYQVYLMVYKGLDVITNKVTPEEAEGI 78 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA~~~~~e---I~IsaDSmQVYkgldIgTAKPs~eE~~~I 78 (115)
|+.+++ +-|+|++|||||++|.+|++.++++ + |+.|+. || ...+.+.+|+..+
T Consensus 5 ~~~~ii-IgIaG~SgSGKTTva~~l~~~~~~~~~~~-I~~D~Y--Yk----~~~~~~~~~~~~~ 60 (218)
T COG0572 5 PEKVII-IGIAGGSGSGKTTVAKELSEQLGVEKVVV-ISLDDY--YK----DQSHLPFEERNKI 60 (218)
T ss_pred CCceEE-EEEeCCCCCCHHHHHHHHHHHhCcCcceE-eecccc--cc----chhhcCHhhcCCc
Confidence 356666 7799999999999999999999977 7 999985 66 3445556665443
No 53
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=97.58 E-value=5.6e-05 Score=56.59 Aligned_cols=67 Identities=10% Similarity=0.031 Sum_probs=48.6
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCceecCCCCHHHhcCCCeeeecccCCCCcc
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLLDFLDPNTRF 92 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLid~ldp~e~y 92 (115)
.++|+||.|+|||++|++|.++ +... |+=|-..+.+.=+-.-++++..-+..+.=..+|+++....|
T Consensus 16 gvLi~G~sG~GKStlal~L~~~-g~~l-vaDD~v~v~~~~~~l~~~~p~~l~g~iEvRGlGiv~v~~~~ 82 (149)
T cd01918 16 GVLITGPSGIGKSELALELIKR-GHRL-VADDRVVVKREGGRLVGRAPEALKGLIEIRGLGIIDVPRLY 82 (149)
T ss_pred EEEEEcCCCCCHHHHHHHHHHc-CCeE-EECCEEEEEEECCEEEEeChHHhCCCcEecCceEEEchhhh
Confidence 4678999999999999999886 4566 88888888776554455555544445555667777766655
No 54
>PRK14527 adenylate kinase; Provisional
Probab=97.56 E-value=4.5e-05 Score=56.71 Aligned_cols=32 Identities=9% Similarity=-0.104 Sum_probs=27.4
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
++++||.|||||.+|..||++++... ++.|.+
T Consensus 9 i~i~G~pGsGKsT~a~~La~~~~~~~-is~gd~ 40 (191)
T PRK14527 9 VIFLGPPGAGKGTQAERLAQELGLKK-LSTGDI 40 (191)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCC-CCccHH
Confidence 44899999999999999999999887 776543
No 55
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.54 E-value=5.7e-05 Score=56.69 Aligned_cols=25 Identities=16% Similarity=0.093 Sum_probs=21.8
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCc
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDL 48 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~ 48 (115)
+++++||||+|||.||..||+.+..
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~~ 29 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLFV 29 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3559999999999999999998883
No 56
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.54 E-value=7.3e-05 Score=57.33 Aligned_cols=33 Identities=6% Similarity=-0.289 Sum_probs=28.5
Q ss_pred eeeeccCCCchhHHHHHHhcCC-CceEeeccceee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP-DLFCRTYQVYLM 58 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~-~~eI~IsaDSmQ 58 (115)
+.|+|++|||||.||..|++.+ +..+ |+.|..-
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~-i~~Ddf~ 35 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCV-IHQDDFF 35 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeE-Ecccccc
Confidence 4689999999999999999999 4666 9999653
No 57
>PRK13949 shikimate kinase; Provisional
Probab=97.52 E-value=7.7e-05 Score=55.42 Aligned_cols=33 Identities=6% Similarity=-0.172 Sum_probs=29.7
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
.++|+||.|||||+++..||+.++... +..|.+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~-id~D~~ 35 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSF-IDLDFF 35 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCe-ecccHH
Confidence 367799999999999999999999988 999954
No 58
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.50 E-value=6.3e-05 Score=52.61 Aligned_cols=26 Identities=12% Similarity=-0.104 Sum_probs=23.5
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
+++.||+|+|||.|+..+|+.++..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~ 27 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPV 27 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcce
Confidence 67899999999999999999997654
No 59
>PRK02496 adk adenylate kinase; Provisional
Probab=97.50 E-value=5.5e-05 Score=55.58 Aligned_cols=32 Identities=9% Similarity=-0.044 Sum_probs=28.1
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
++|.||.|||||.+|..||+.++... ++.|.+
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~-i~~~~~ 35 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPH-ISTGDI 35 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcE-EEhHHH
Confidence 67899999999999999999999888 877543
No 60
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.49 E-value=9.2e-05 Score=54.99 Aligned_cols=37 Identities=11% Similarity=-0.032 Sum_probs=29.2
Q ss_pred eeeeccCCCchhHHHHHHhcCCC---ceEeeccceeeeccCCc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD---LFCRTYQVYLMVYKGLD 64 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~---~eI~IsaDSmQVYkgld 64 (115)
+.|+||+|||||+|+..|+..++ ..+ ++.|. .|+.++
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~~~~~~v-~~~D~--~~~~~~ 41 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLGNPKVVI-ISQDS--YYKDLS 41 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCeEE-EEecc--cccccc
Confidence 45899999999999999998873 456 88884 565544
No 61
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.47 E-value=0.00027 Score=52.85 Aligned_cols=36 Identities=8% Similarity=-0.110 Sum_probs=30.2
Q ss_pred eeeeccCCCchhHHHHHHhcCC-----CceEeeccceeeecc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP-----DLFCRTYQVYLMVYK 61 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~-----~~eI~IsaDSmQVYk 61 (115)
+.|+|++|||||.||-.|++.+ +..+ |+.|..-.+.
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~-i~~Ddf~~~~ 42 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVV-ISLDDYYVPR 42 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEE-EehhhcccCc
Confidence 4689999999999999999885 4567 9999876655
No 62
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.46 E-value=7.7e-05 Score=58.58 Aligned_cols=32 Identities=9% Similarity=-0.113 Sum_probs=29.4
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
++|+||.|||||++|..||++++... |+.|.+
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g~~~-is~gdl 40 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKENLKH-INMGNI 40 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcE-EECChH
Confidence 67899999999999999999999988 888865
No 63
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.45 E-value=9.8e-05 Score=55.40 Aligned_cols=32 Identities=3% Similarity=-0.233 Sum_probs=27.1
Q ss_pred eeeeccCCCchhHHHHHHhcCCC---ceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD---LFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~---~eI~IsaDSm 57 (115)
+.|+||+|||||+|+..|++.++ ..+ ++.|..
T Consensus 9 I~I~G~sGsGKTTl~~~l~~~l~~~~~~~-i~~D~~ 43 (209)
T PRK05480 9 IGIAGGSGSGKTTVASTIYEELGDESIAV-IPQDSY 43 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCceEE-EeCCcc
Confidence 45899999999999999999883 345 899985
No 64
>PRK14528 adenylate kinase; Provisional
Probab=97.44 E-value=9.2e-05 Score=55.50 Aligned_cols=38 Identities=5% Similarity=-0.070 Sum_probs=31.7
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLD 64 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgld 64 (115)
++|.||.|||||.+|..||+.++... |++|.. +...+.
T Consensus 4 i~i~G~pGsGKtt~a~~la~~~~~~~-is~~~~-lr~~~~ 41 (186)
T PRK14528 4 IIFMGPPGAGKGTQAKILCERLSIPQ-ISTGDI-LREAVK 41 (186)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCe-eeCCHH-HHHHhh
Confidence 57899999999999999999999988 888776 344333
No 65
>PRK13946 shikimate kinase; Provisional
Probab=97.42 E-value=0.00012 Score=54.52 Aligned_cols=31 Identities=6% Similarity=-0.307 Sum_probs=28.4
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
|+++|+.|||||.++..||++++... +..|.
T Consensus 13 I~l~G~~GsGKsti~~~LA~~Lg~~~-id~D~ 43 (184)
T PRK13946 13 VVLVGLMGAGKSTVGRRLATMLGLPF-LDADT 43 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCe-ECcCH
Confidence 55699999999999999999999999 88885
No 66
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=9.1e-05 Score=63.01 Aligned_cols=43 Identities=16% Similarity=-0.021 Sum_probs=36.0
Q ss_pred CCceeEee---eeeeccCCCchhHHHHHHhcCCCceEeeccceeeec
Q psy7554 17 TPDQVYLS---YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVY 60 (115)
Q Consensus 17 ~~~~~~~~---~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVY 60 (115)
.+|.|=|+ +|++||||||||-||--||+-+|... --||+-++=
T Consensus 89 ~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPF-aiADATtLT 134 (408)
T COG1219 89 DNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPF-AIADATTLT 134 (408)
T ss_pred CCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCe-eeccccchh
Confidence 45556664 78999999999999999999999987 668887763
No 67
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.40 E-value=8.7e-05 Score=55.43 Aligned_cols=23 Identities=9% Similarity=-0.125 Sum_probs=20.8
Q ss_pred eeeeccCCCchhHHHHHHhcCCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD 47 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~ 47 (115)
|-|+||+|||||+||..|++.++
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999998876
No 68
>PTZ00301 uridine kinase; Provisional
Probab=97.40 E-value=8.9e-05 Score=57.54 Aligned_cols=68 Identities=6% Similarity=-0.010 Sum_probs=41.4
Q ss_pred eeeeccCCCchhHHHHHHhcCCC------ce-EeeccceeeeccCCceecCCCCHHHhcCCCeeeecccCCCCccCHHHH
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD------LF-CRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLLDFLDPNTRFTVVDY 97 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~------~e-I~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLid~ldp~e~ySv~~F 97 (115)
+-|+||+|||||+||..|+++++ .. + ++.|+ .|+.-. ..| ..+.. ..++-.| +.|+...|
T Consensus 6 IgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~v-i~~D~--yy~~~~---~~~-~~~~~-----~~~~d~p-~a~D~~~l 72 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSELMAHCGPVSIGV-ICEDF--YYRDQS---NIP-ESERA-----YTNYDHP-KSLEHDLL 72 (210)
T ss_pred EEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEE-eCCCC--CccCcc---cCC-HHHhc-----CCCCCCh-hhhCHHHH
Confidence 56899999999999998887652 23 5 88888 676532 112 11111 1122222 46677777
Q ss_pred HHHHHHHH
Q psy7554 98 RNRALKHT 105 (115)
Q Consensus 98 ~~~A~~~I 105 (115)
.+...++.
T Consensus 73 ~~~l~~L~ 80 (210)
T PTZ00301 73 TTHLRELK 80 (210)
T ss_pred HHHHHHHH
Confidence 76664444
No 69
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.40 E-value=5.3e-05 Score=54.17 Aligned_cols=29 Identities=10% Similarity=-0.135 Sum_probs=26.0
Q ss_pred eeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 27 SCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 27 i~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
|.||+|||||++|..||++++... ||+..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~-is~~~ 29 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVH-ISVGD 29 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEE-EEHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcce-echHH
Confidence 589999999999999999999888 88643
No 70
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=97.39 E-value=5.8e-05 Score=66.88 Aligned_cols=38 Identities=5% Similarity=-0.112 Sum_probs=34.1
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCc
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLD 64 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgld 64 (115)
.+.|.||+|||||++|..||++++... .|+-++||.+.
T Consensus 444 ~i~i~g~~~~gks~~~~~l~~~~~~~~---~~~~~~~~~~~ 481 (661)
T PRK11860 444 VICIDGPTASGKGTVAARVAEALGYHY---LDSGALYRLTA 481 (661)
T ss_pred eEEeeCCCCCCHHHHHHHHHHHhCCeE---ecHHHhhhHHH
Confidence 467899999999999999999999988 67779999974
No 71
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.39 E-value=9.6e-05 Score=56.04 Aligned_cols=30 Identities=13% Similarity=-0.099 Sum_probs=25.1
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQV 55 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaD 55 (115)
++|.||+|||||++|-+||++++..= |+.|
T Consensus 3 iiilG~pGaGK~T~A~~La~~~~i~h-lstg 32 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKLGLPH-LDTG 32 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcE-EcHh
Confidence 67899999999999999999976654 4544
No 72
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=97.39 E-value=0.00016 Score=54.49 Aligned_cols=31 Identities=0% Similarity=-0.389 Sum_probs=28.1
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
+.|+|+.|||||+++-.|++ ++..+ |++|.+
T Consensus 5 i~ltG~~gsGKst~~~~l~~-~g~~~-i~~D~~ 35 (194)
T PRK00081 5 IGLTGGIGSGKSTVANLFAE-LGAPV-IDADAI 35 (194)
T ss_pred EEEECCCCCCHHHHHHHHHH-cCCEE-EEecHH
Confidence 66899999999999999998 88899 999963
No 73
>PLN02200 adenylate kinase family protein
Probab=97.37 E-value=0.00012 Score=57.39 Aligned_cols=31 Identities=0% Similarity=-0.288 Sum_probs=27.3
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
++|+||.|||||.+|-.||++++... |+++.
T Consensus 46 i~I~G~PGSGKsT~a~~La~~~g~~h-is~gd 76 (234)
T PLN02200 46 TFVLGGPGSGKGTQCEKIVETFGFKH-LSAGD 76 (234)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeE-EEccH
Confidence 67899999999999999999998877 77743
No 74
>PRK01184 hypothetical protein; Provisional
Probab=97.36 E-value=0.00013 Score=53.41 Aligned_cols=29 Identities=0% Similarity=-0.298 Sum_probs=25.3
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQV 55 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaD 55 (115)
++|+||.|||||++|. ++++++..+ +++|
T Consensus 4 i~l~G~~GsGKsT~a~-~~~~~g~~~-i~~~ 32 (184)
T PRK01184 4 IGVVGMPGSGKGEFSK-IAREMGIPV-VVMG 32 (184)
T ss_pred EEEECCCCCCHHHHHH-HHHHcCCcE-EEhh
Confidence 6689999999999985 899999888 8873
No 75
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=97.35 E-value=8.5e-05 Score=57.66 Aligned_cols=37 Identities=5% Similarity=-0.066 Sum_probs=30.8
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGL 63 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgl 63 (115)
.+.|.||+|||||+++..||++++... ++ +=.+||.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~~~~-~~--~g~~~r~~ 40 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLGYAY-LD--SGAMYRAI 40 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCce-ee--CchHHHHH
Confidence 467899999999999999999999888 54 44557665
No 76
>PRK06696 uridine kinase; Validated
Probab=97.34 E-value=0.00012 Score=56.03 Aligned_cols=40 Identities=5% Similarity=-0.230 Sum_probs=29.7
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHhcCCC---ce-Eeeccceee
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLTDGPD---LF-CRTYQVYLM 58 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA~~~~---~e-I~IsaDSmQ 58 (115)
++..++ |.|+|++|||||+||-.||+.++ .. +.++.|..-
T Consensus 19 ~~~~~i-I~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 19 LTRPLR-VAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CCCceE-EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 334444 77999999999999999999883 22 226788653
No 77
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.34 E-value=0.00025 Score=52.59 Aligned_cols=31 Identities=6% Similarity=-0.145 Sum_probs=25.7
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
++|+||.|||||+|+..||..++..+ .-.|+
T Consensus 5 i~l~G~sGsGKsTl~~~l~~~~~~~~-~~~~~ 35 (186)
T PRK10078 5 IWLMGPSGSGKDSLLAALRQREQTQL-LVAHR 35 (186)
T ss_pred EEEECCCCCCHHHHHHHHhccCCCeE-EEcCE
Confidence 45899999999999999999887776 44444
No 78
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.34 E-value=0.00012 Score=53.77 Aligned_cols=33 Identities=6% Similarity=-0.308 Sum_probs=26.6
Q ss_pred eeeeccCCCchhHHHHHHhcCCCce-Eeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLF-CRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~e-I~IsaDSm 57 (115)
++++||.|||||++|..|++.++.. +.++.|..
T Consensus 5 i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~ 38 (175)
T cd00227 5 IILNGGSSAGKSSIARALQSVLAEPWLHFGVDSF 38 (175)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCCccccCccHH
Confidence 5589999999999999999998653 33577754
No 79
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.33 E-value=0.00018 Score=54.11 Aligned_cols=66 Identities=14% Similarity=0.046 Sum_probs=39.3
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCceecCCCCHHHh-cCCCeeeecccCCCCccCHHHHHHHHHH
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVITNKVTPEEA-EGIPHHLLDFLDPNTRFTVVDYRNRALK 103 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~-~~IpHHLid~ldp~e~ySv~~F~~~A~~ 103 (115)
++|+|+++||||.+|.++|...+... +.. .|++|-.+|+ ++|..|--. ....|+..++..+..+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~-~y~-----------at~~~~d~em~~rI~~H~~~---R~~~w~t~E~~~~l~~ 66 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPV-TYI-----------ATAEAFDDEMAERIARHRKR---RPAHWRTIETPRDLVS 66 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCe-EEE-----------EccCcCCHHHHHHHHHHHHh---CCCCceEeecHHHHHH
Confidence 57899999999999999998865555 333 5555554443 334443111 1333444444444444
Q ss_pred HH
Q psy7554 104 HT 105 (115)
Q Consensus 104 ~I 105 (115)
++
T Consensus 67 ~l 68 (169)
T cd00544 67 AL 68 (169)
T ss_pred HH
Confidence 44
No 80
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=97.32 E-value=0.00018 Score=54.64 Aligned_cols=36 Identities=3% Similarity=-0.329 Sum_probs=32.2
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee--eecc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL--MVYK 61 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm--QVYk 61 (115)
+.|+|+.|||||.++-.|++.++..+ |++|.+ ++|+
T Consensus 4 i~itG~~gsGKst~~~~l~~~~g~~~-i~~D~~~~~~~~ 41 (195)
T PRK14730 4 IGLTGGIASGKSTVGNYLAQQKGIPI-LDADIYAREALA 41 (195)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCeE-eeCcHHHHHHHh
Confidence 56899999999999999999889999 999987 4665
No 81
>PRK00625 shikimate kinase; Provisional
Probab=97.30 E-value=0.00016 Score=54.40 Aligned_cols=32 Identities=16% Similarity=-0.059 Sum_probs=29.2
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
|+++|+.|||||+++..||++++... |..|.+
T Consensus 3 I~LiG~pGsGKTT~~k~La~~l~~~~-id~D~~ 34 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFLSLPF-FDTDDL 34 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCE-EEhhHH
Confidence 56799999999999999999999988 888864
No 82
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.30 E-value=0.00022 Score=52.82 Aligned_cols=31 Identities=3% Similarity=-0.323 Sum_probs=27.9
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
+.|+|+.|||||+++..|++ ++..+ |++|.+
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~-i~~D~~ 32 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPV-IDADKI 32 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCE-EecCHH
Confidence 56899999999999999999 88888 999953
No 83
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.28 E-value=0.00053 Score=53.10 Aligned_cols=66 Identities=8% Similarity=-0.206 Sum_probs=40.6
Q ss_pred eeeccCCCchhHHHHHHhcCCC-------ceEeeccceeeeccCCceecCCCCHHHhcCCCeeeecccCCCCccCHHHHH
Q psy7554 26 LSCLPDSVCPHAHQVDLTDGPD-------LFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLLDFLDPNTRFTVVDYR 98 (115)
Q Consensus 26 li~GpTasGKS~lai~LA~~~~-------~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLid~ldp~e~ySv~~F~ 98 (115)
-|+||+|||||+||..|+..+. ..+ |+.|.. |+. .++++... +++.-..-+.|++..+.
T Consensus 3 gI~G~sGSGKTTla~~L~~~l~~~~~~~~v~v-i~~D~f--~~~---------~~~~~~~~--~~~~~g~p~~~d~~~l~ 68 (220)
T cd02025 3 GIAGSVAVGKSTTARVLQALLSRWPDHPNVEL-ITTDGF--LYP---------NKELIERG--LMDRKGFPESYDMEALL 68 (220)
T ss_pred EeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEE-EecCcc--cCc---------HHHHHHhh--hhhcCCCcccCCHHHHH
Confidence 4899999999999999997762 245 888987 432 23332222 11222223677777776
Q ss_pred HHHHHHH
Q psy7554 99 NRALKHT 105 (115)
Q Consensus 99 ~~A~~~I 105 (115)
+...++.
T Consensus 69 ~~L~~l~ 75 (220)
T cd02025 69 KFLKDIK 75 (220)
T ss_pred HHHHHHH
Confidence 5544443
No 84
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.28 E-value=0.00023 Score=54.51 Aligned_cols=32 Identities=9% Similarity=-0.090 Sum_probs=24.5
Q ss_pred eeeeccCCCchhHHHHHHhcCC-----CceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP-----DLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~-----~~eI~IsaDSm 57 (115)
++++||||||||..+.+||..+ ...+ |++|..
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~l-is~D~~ 40 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVAL-ISADTY 40 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEE-EEESTS
T ss_pred EEEECCCCCchHhHHHHHHHHHhhcccccee-ecCCCC
Confidence 4579999999999988888543 3456 888865
No 85
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.26 E-value=0.0002 Score=53.75 Aligned_cols=34 Identities=3% Similarity=-0.239 Sum_probs=25.0
Q ss_pred eeeccCCCchhHHHHHHhcCC--CceEeeccceeee
Q psy7554 26 LSCLPDSVCPHAHQVDLTDGP--DLFCRTYQVYLMV 59 (115)
Q Consensus 26 li~GpTasGKS~lai~LA~~~--~~eI~IsaDSmQV 59 (115)
+++|+.|||||.++-.+...+ ++.+.|++|-+.-
T Consensus 19 i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~ 54 (199)
T PF06414_consen 19 IIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQ 54 (199)
T ss_dssp EEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGG
T ss_pred EEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHH
Confidence 479999999999999998876 4444499998643
No 86
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.26 E-value=0.0002 Score=55.03 Aligned_cols=33 Identities=9% Similarity=-0.173 Sum_probs=28.3
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
++|+|+.|||||.+|-.||++++...+++.|.+
T Consensus 6 i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~ 38 (197)
T PRK12339 6 HFIGGIPGVGKTSISGYIARHRAIDIVLSGDYL 38 (197)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEEehhHHH
Confidence 568999999999999999999987653777865
No 87
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.24 E-value=0.00024 Score=61.48 Aligned_cols=36 Identities=11% Similarity=-0.129 Sum_probs=32.0
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeeccceeeec
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVY 60 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVY 60 (115)
.+++.||||+|||.+|..||+.++... +..|+..+.
T Consensus 49 ~ILLiGppG~GKT~lAraLA~~l~~~f-i~vdat~~~ 84 (441)
T TIGR00390 49 NILMIGPTGVGKTEIARRLAKLANAPF-IKVEATKFT 84 (441)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCeE-EEeecceee
Confidence 466799999999999999999999999 888977654
No 88
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0017 Score=52.78 Aligned_cols=83 Identities=17% Similarity=0.189 Sum_probs=58.2
Q ss_pred cCCCceeEeeeeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCceecCCCCHHHhcCCCeeeecccCCC--Ccc
Q psy7554 15 TGTPDQVYLSYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLLDFLDPN--TRF 92 (115)
Q Consensus 15 ~~~~~~~~~~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLid~ldp~--e~y 92 (115)
+=.+.+|+. |.||.|||||+||.-|+-..+-++ ..--=+|+|=||..-.|+.--+.++ ++.+-.|- .--
T Consensus 26 ~v~~GEvha---iMGPNGsGKSTLa~~i~G~p~Y~V---t~G~I~~~GedI~~l~~~ERAr~Gi---fLafQ~P~ei~GV 96 (251)
T COG0396 26 TVKEGEVHA---IMGPNGSGKSTLAYTIMGHPKYEV---TEGEILFDGEDILELSPDERARAGI---FLAFQYPVEIPGV 96 (251)
T ss_pred eEcCCcEEE---EECCCCCCHHHHHHHHhCCCCceE---ecceEEECCcccccCCHhHHHhcCC---EEeecCCccCCCe
Confidence 445678888 999999999999999997765444 2223379999998777644444444 34444454 456
Q ss_pred CHHHHHHHHHHHHh
Q psy7554 93 TVVDYRNRALKHTG 106 (115)
Q Consensus 93 Sv~~F~~~A~~~I~ 106 (115)
++.+|.+.|..+..
T Consensus 97 ~~~~fLr~a~n~~~ 110 (251)
T COG0396 97 TNSDFLRAAMNARR 110 (251)
T ss_pred eHHHHHHHHHHhhh
Confidence 78888887777643
No 89
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.23 E-value=0.00019 Score=62.18 Aligned_cols=36 Identities=11% Similarity=-0.129 Sum_probs=30.8
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeeccceeeec
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVY 60 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVY 60 (115)
.+|++||||+|||.||..||+.++... +..|+..+.
T Consensus 52 ~ILliGp~G~GKT~LAr~LAk~l~~~f-i~vD~t~f~ 87 (443)
T PRK05201 52 NILMIGPTGVGKTEIARRLAKLANAPF-IKVEATKFT 87 (443)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCChh-eeecchhhc
Confidence 567899999999999999999999988 888865433
No 90
>PRK08356 hypothetical protein; Provisional
Probab=97.22 E-value=0.00044 Score=51.76 Aligned_cols=37 Identities=3% Similarity=-0.208 Sum_probs=27.9
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
|.+.-+ ++|+||.|||||++|-.|++ ++... |++..+
T Consensus 2 ~~~~~~---i~~~G~~gsGK~t~a~~l~~-~g~~~-is~~~~ 38 (195)
T PRK08356 2 GVEKMI---VGVVGKIAAGKTTVAKFFEE-KGFCR-VSCSDP 38 (195)
T ss_pred CCCcEE---EEEECCCCCCHHHHHHHHHH-CCCcE-EeCCCc
Confidence 445533 56899999999999999964 77766 776653
No 91
>PHA00729 NTP-binding motif containing protein
Probab=97.21 E-value=0.00019 Score=57.07 Aligned_cols=26 Identities=4% Similarity=-0.063 Sum_probs=23.1
Q ss_pred EeeeeeeccCCCchhHHHHHHhcCCC
Q psy7554 22 YLSYLSCLPDSVCPHAHQVDLTDGPD 47 (115)
Q Consensus 22 ~~~~li~GpTasGKS~lai~LA~~~~ 47 (115)
|.+++|+||+|+|||.||..||++++
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999998764
No 92
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.18 E-value=0.00035 Score=53.12 Aligned_cols=50 Identities=16% Similarity=0.143 Sum_probs=33.1
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCceecCCCCHHHhcCCCeeeec
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLLD 84 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLid 84 (115)
++|+||.|||||+|+-.|.+.... + +.-..-.|-.|...|..++.||+++
T Consensus 16 ivi~GpsG~GK~tl~~~L~~~~~~-~---------~~~~~~ttr~~r~~e~~g~~y~fv~ 65 (206)
T PRK14738 16 VVISGPSGVGKDAVLARMRERKLP-F---------HFVVTATTRPKRPGEIDGVDYHFVT 65 (206)
T ss_pred EEEECcCCCCHHHHHHHHHhcCCc-c---------cccccccCCCCCCCCCCCCeeeeCC
Confidence 457999999999999999764221 1 1122233444455677888888774
No 93
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.18 E-value=0.00032 Score=55.28 Aligned_cols=31 Identities=6% Similarity=-0.166 Sum_probs=24.9
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceE-eeccc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFC-RTYQV 55 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI-~IsaD 55 (115)
+++.||+|+|||.||..||+.++... +++++
T Consensus 24 vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~ 55 (262)
T TIGR02640 24 VHLRGPAGTGKTTLAMHVARKRDRPVMLINGD 55 (262)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCC
Confidence 45799999999999999999887654 25554
No 94
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.18 E-value=0.00039 Score=44.59 Aligned_cols=38 Identities=8% Similarity=0.002 Sum_probs=26.9
Q ss_pred eeeeccCCCchhHHHHHHhcCC---CceEeeccceeeeccCCce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP---DLFCRTYQVYLMVYKGLDV 65 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~---~~eI~IsaDSmQVYkgldI 65 (115)
+.|+|+.|||||+++..|++.+ +..+ .|...+..+..-
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~---i~~~~I~eg~~~ 42 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVV---LDEIVILEGLYA 42 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEE---EeEEEEecchhh
Confidence 4579999999999999999984 4444 344444444433
No 95
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.17 E-value=0.00024 Score=60.39 Aligned_cols=34 Identities=12% Similarity=-0.115 Sum_probs=27.9
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeeccceee
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLM 58 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQ 58 (115)
++|+.||||||||.||..||+.++... +..|.-.
T Consensus 110 ~iLl~Gp~GtGKT~lAr~lA~~l~~pf-~~id~~~ 143 (412)
T PRK05342 110 NILLIGPTGSGKTLLAQTLARILDVPF-AIADATT 143 (412)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCc-eecchhh
Confidence 467899999999999999999998776 5555543
No 96
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.17 E-value=0.00031 Score=52.98 Aligned_cols=32 Identities=3% Similarity=-0.235 Sum_probs=26.6
Q ss_pred eeeeccCCCchhHHHHHHhcCCC---ceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD---LFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~---~eI~IsaDSm 57 (115)
+.|+||+|||||+|+..|+..++ ..+ ++.|..
T Consensus 9 i~I~G~sGsGKSTl~~~l~~~l~~~~~~~-i~~D~~ 43 (207)
T TIGR00235 9 IGIGGGSGSGKTTVARKIYEQLGKLEIVI-ISQDNY 43 (207)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcccCCeE-eccccc
Confidence 45899999999999999998765 456 888875
No 97
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.15 E-value=0.00032 Score=59.88 Aligned_cols=32 Identities=9% Similarity=-0.128 Sum_probs=26.8
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
++|+.||||||||.+|..||+.++... ...|.
T Consensus 118 ~iLL~GP~GsGKT~lAraLA~~l~~pf-~~~da 149 (413)
T TIGR00382 118 NILLIGPTGSGKTLLAQTLARILNVPF-AIADA 149 (413)
T ss_pred eEEEECCCCcCHHHHHHHHHHhcCCCe-EEech
Confidence 577999999999999999999998765 44443
No 98
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=97.15 E-value=0.00026 Score=60.61 Aligned_cols=35 Identities=11% Similarity=-0.000 Sum_probs=24.4
Q ss_pred eeeeccCCCchhHHHHHHhcCCC--ceEeeccceeeec
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD--LFCRTYQVYLMVY 60 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~--~eI~IsaDSmQVY 60 (115)
+|++||+|+|||+||+.+|+.++ ... +....-.||
T Consensus 53 iLiaGppGtGKTAlA~~ia~eLG~~~PF-~~isgSEiy 89 (398)
T PF06068_consen 53 ILIAGPPGTGKTALAMAIAKELGEDVPF-VSISGSEIY 89 (398)
T ss_dssp EEEEE-TTSSHHHHHHHHHHHCTTTS-E-EEEEGGGG-
T ss_pred EEEeCCCCCCchHHHHHHHHHhCCCCCe-eEcccceee
Confidence 45899999999999999999997 333 333444444
No 99
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.14 E-value=0.0013 Score=47.66 Aligned_cols=32 Identities=9% Similarity=-0.134 Sum_probs=25.2
Q ss_pred eeeeccCCCchhHHHHHHhcCC-----CceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP-----DLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~-----~~eI~IsaDSm 57 (115)
+++.||+|||||.++..+|..+ ...+ |++|..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~-i~~D~~ 39 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLL-VAADTY 39 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEE-EEcCCC
Confidence 6789999999999998888653 2345 889964
No 100
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.12 E-value=0.00033 Score=51.03 Aligned_cols=23 Identities=4% Similarity=-0.194 Sum_probs=20.5
Q ss_pred eeeeccCCCchhHHHHHHhcCCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD 47 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~ 47 (115)
++|+||+|||||+|+-.|+..++
T Consensus 4 ~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 4 IYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999998765
No 101
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.12 E-value=0.00044 Score=54.17 Aligned_cols=50 Identities=18% Similarity=0.172 Sum_probs=41.3
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCceecCCCCHHHhcCCCeeeecc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLLDF 85 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLid~ 85 (115)
++|+||.|+|||+|...|-+..+....|| -.|-+|-+-|..++.+|+++.
T Consensus 7 ~vlsgPSG~GKsTl~k~L~~~~~l~~SVS-----------~TTR~pR~gEv~G~dY~Fvs~ 56 (191)
T COG0194 7 IVLSGPSGVGKSTLVKALLEDDKLRFSVS-----------ATTRKPRPGEVDGVDYFFVTE 56 (191)
T ss_pred EEEECCCCCCHHHHHHHHHhhcCeEEEEE-----------eccCCCCCCCcCCceeEeCCH
Confidence 56899999999999999987776555344 467789999999999999964
No 102
>PRK13948 shikimate kinase; Provisional
Probab=97.11 E-value=0.00043 Score=52.66 Aligned_cols=31 Identities=6% Similarity=-0.274 Sum_probs=28.1
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
++++|+-|||||.++..||+.++... |-.|.
T Consensus 13 I~LiG~~GsGKSTvg~~La~~lg~~~-iD~D~ 43 (182)
T PRK13948 13 VALAGFMGTGKSRIGWELSRALMLHF-IDTDR 43 (182)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCE-EECCH
Confidence 45699999999999999999999999 88883
No 103
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.11 E-value=0.00029 Score=53.26 Aligned_cols=23 Identities=13% Similarity=0.034 Sum_probs=19.6
Q ss_pred eeeeccCCCchhHHHHHHhcCCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD 47 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~ 47 (115)
++|+||||||||++...|+..++
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 67999999999999888776653
No 104
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.10 E-value=0.00039 Score=60.87 Aligned_cols=37 Identities=8% Similarity=0.015 Sum_probs=31.4
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLD 64 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgld 64 (115)
+.|.||+|||||.+|..||+.++... ++.| .+||.+.
T Consensus 287 i~i~G~sgsGKst~a~~la~~l~~~~-~d~g--~~YR~~a 323 (512)
T PRK13477 287 IAIDGPAGAGKSTVTRAVAKKLGLLY-LDTG--AMYRAVT 323 (512)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE-ecCC--ceehHHH
Confidence 55899999999999999999999877 6666 5699863
No 105
>PRK07667 uridine kinase; Provisional
Probab=97.10 E-value=0.00032 Score=52.77 Aligned_cols=40 Identities=3% Similarity=-0.203 Sum_probs=30.3
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhcCCC-----ceEeecccee
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTDGPD-----LFCRTYQVYL 57 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~~~~-----~eI~IsaDSm 57 (115)
-++.+- +-+-|+|+.|||||.+|-.|++.++ ..+ ++.|..
T Consensus 12 ~~~~~~-~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~-i~~Dd~ 56 (193)
T PRK07667 12 KHKENR-FILGIDGLSRSGKTTFVANLKENMKQEGIPFHI-FHIDDY 56 (193)
T ss_pred hcCCCC-EEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEE-EEcCcc
Confidence 334443 3367999999999999999998763 456 899974
No 106
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.10 E-value=0.00042 Score=51.39 Aligned_cols=37 Identities=8% Similarity=-0.251 Sum_probs=32.2
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee--eeccC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL--MVYKG 62 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm--QVYkg 62 (115)
+.|+|+.|||||.++-.|++..+..+ |++|.+ ++|..
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~-i~~D~~~~~~~~~ 40 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPV-IDADKIAHQVVEK 40 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeE-EeCCHHHHHHHhc
Confidence 56899999999999999999887889 999976 56654
No 107
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.09 E-value=0.00034 Score=54.31 Aligned_cols=29 Identities=7% Similarity=-0.166 Sum_probs=26.7
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQ 54 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~Isa 54 (115)
|-|.||.|||||++|..||+.++.+. ||+
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~-vsa 31 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKL-VSA 31 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCce-eec
Confidence 56899999999999999999999999 774
No 108
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.08 E-value=0.00023 Score=51.95 Aligned_cols=23 Identities=4% Similarity=-0.228 Sum_probs=20.5
Q ss_pred eeeeccCCCchhHHHHHHhcCCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD 47 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~ 47 (115)
++++|+.|||||++|..|++.+.
T Consensus 10 I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 10 IWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999998875
No 109
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.08 E-value=0.00028 Score=51.16 Aligned_cols=33 Identities=3% Similarity=-0.167 Sum_probs=26.1
Q ss_pred eeeeccCCCchhHHHHHHhcCC---C--ceEeeccceee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP---D--LFCRTYQVYLM 58 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~---~--~eI~IsaDSmQ 58 (115)
++|+|+.|||||.||..|++.+ + ... ++.|++.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~-i~~d~~r 39 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYV-LDGDNVR 39 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEE-EcCHHHH
Confidence 4689999999999999999987 3 234 6777653
No 110
>PRK12338 hypothetical protein; Provisional
Probab=97.06 E-value=0.0004 Score=57.72 Aligned_cols=34 Identities=6% Similarity=-0.011 Sum_probs=28.4
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
-++|+|+.|||||.+|-.||++++....++.|.+
T Consensus 6 ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~ 39 (319)
T PRK12338 6 VILIGSASGIGKSTIASELARTLNIKHLIETDFI 39 (319)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCeEEccChHH
Confidence 3568999999999999999999998762477754
No 111
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.04 E-value=0.0003 Score=54.40 Aligned_cols=32 Identities=6% Similarity=-0.067 Sum_probs=26.0
Q ss_pred eeeeccCCCchhHHHHHHhcCCC-----ceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD-----LFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~-----~eI~IsaDSm 57 (115)
++++|+.|||||++|.+||+.++ ..+ ++.|+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~-i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVII-LGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEE-EccHHH
Confidence 57899999999999999998763 345 777765
No 112
>PF02283 CobU: Cobinamide kinase / cobinamide phosphate guanyltransferase; InterPro: IPR003203 This family is composed of a group of bifunctional cobalbumin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape [].; GO: 0000166 nucleotide binding, 0043752 adenosylcobinamide kinase activity, 0051188 cofactor biosynthetic process; PDB: 1CBU_C 1C9K_B.
Probab=97.04 E-value=0.00034 Score=52.72 Aligned_cols=39 Identities=15% Similarity=-0.101 Sum_probs=30.7
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCceecCCCCHHHh
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVITNKVTPEEA 75 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~ 75 (115)
+||+|...||||++|-+||.+++... + =|.|++|..+||
T Consensus 1 ilv~GG~rSGKS~~Ae~la~~~~~~~-~-----------YiAT~~~~D~em 39 (167)
T PF02283_consen 1 ILVTGGARSGKSSFAERLALSFGGPV-T-----------YIATARPFDEEM 39 (167)
T ss_dssp EEEEESTTSSHHHHHHHHHTS--SCE-E-----------EEESSHHHHHHH
T ss_pred CEEeCCCCcchHHHHHHHHHhcCCCc-E-----------EEeCCCCCCHHH
Confidence 57899999999999999999887766 2 267888877665
No 113
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.00033 Score=64.22 Aligned_cols=25 Identities=20% Similarity=0.050 Sum_probs=22.3
Q ss_pred eeeeeeccCCCchhHHHHHHhcCCC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGPD 47 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~~ 47 (115)
-|+|.+||||+|||.||..||+.+.
T Consensus 522 gsFlF~GPTGVGKTELAkaLA~~Lf 546 (786)
T COG0542 522 GSFLFLGPTGVGKTELAKALAEALF 546 (786)
T ss_pred eEEEeeCCCcccHHHHHHHHHHHhc
Confidence 3666999999999999999999875
No 114
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=97.00 E-value=0.00074 Score=56.20 Aligned_cols=67 Identities=12% Similarity=0.069 Sum_probs=48.2
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeeccceeeecc-CCceecCCCCHHHhcCCCeeeecccCCCCcc
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYK-GLDVITNKVTPEEAEGIPHHLLDFLDPNTRF 92 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYk-gldIgTAKPs~eE~~~IpHHLid~ldp~e~y 92 (115)
.+||+||.|+|||.+|++|-++- ... |.=|.+-+|+ +=+..-.+|+.--..-+.=..+|+++....|
T Consensus 147 GVLItG~SG~GKSElALeLi~rg-hrL-VaDD~V~i~~~~~~~L~gr~pe~l~gllEIRGlGii~v~~~~ 214 (308)
T COG1493 147 GVLITGPSGAGKSELALELIKRG-HRL-VADDAVEIFREGGNRLVGRAPELLAGLLEIRGLGIINVMTVF 214 (308)
T ss_pred EEEEECCCCCCHhHHHHHHHHhc-cce-eccccEEEEeccCCeEeecChHHhcCcEEecccceEeeehhc
Confidence 57899999999999999998765 556 7889999999 7777777753333333333445666655544
No 115
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.99 E-value=0.00086 Score=50.19 Aligned_cols=31 Identities=3% Similarity=-0.321 Sum_probs=26.5
Q ss_pred eeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 26 LSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 26 li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
+|+||+|||||.|+..|+..++... +..|.+
T Consensus 7 ~l~G~sGsGKSTl~~~la~~l~~~~-i~gd~~ 37 (176)
T PRK09825 7 ILMGVSGSGKSLIGSKIAALFSAKF-IDGDDL 37 (176)
T ss_pred EEECCCCCCHHHHHHHHHHhcCCEE-ECCccc
Confidence 4899999999999999999888766 766653
No 116
>PRK04040 adenylate kinase; Provisional
Probab=96.98 E-value=0.00054 Score=51.96 Aligned_cols=33 Identities=6% Similarity=-0.236 Sum_probs=27.9
Q ss_pred eeeeeccCCCchhHHHHHHhcCC--CceEeecccee
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGP--DLFCRTYQVYL 57 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~--~~eI~IsaDSm 57 (115)
.++|+|+.|||||+++..|++++ +... ++.|+.
T Consensus 4 ~i~v~G~pG~GKtt~~~~l~~~l~~~~~~-~~~g~~ 38 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALEKLKEDYKI-VNFGDV 38 (188)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHhccCCeE-EecchH
Confidence 35789999999999999999999 5666 777773
No 117
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.95 E-value=0.00058 Score=49.31 Aligned_cols=21 Identities=10% Similarity=-0.092 Sum_probs=18.4
Q ss_pred eeeeeccCCCchhHHHHHHhc
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~ 44 (115)
+++|.||+|+|||.|+.+++.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~ 21 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLY 21 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999988764
No 118
>PRK15453 phosphoribulokinase; Provisional
Probab=96.94 E-value=0.0013 Score=54.23 Aligned_cols=60 Identities=7% Similarity=-0.014 Sum_probs=40.6
Q ss_pred eeeeccCCCchhHHHHHHhcCCC-----ceEeeccceeeeccCCceecCCCCHHHhcCCCeeeecccCCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD-----LFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLLDFLDPN 89 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~-----~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLid~ldp~ 89 (115)
|.|+|++|||||.++..|++.++ ..+ |+.|+.--|.- .-...++..+++++. -+|+..|+
T Consensus 8 I~ItG~SGsGKTTva~~l~~if~~~~~~~~v-i~~D~yh~ydr-~~~~~~~~~~~r~g~---nfdhf~Pd 72 (290)
T PRK15453 8 IAVTGSSGAGTTTVKRAFEKIFRRENINAAV-VEGDSFHRYTR-PEMKAAIAKARAAGR---HFSHFGPE 72 (290)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCCeEE-EecccccccCh-hhHhhhhHHHHhcCC---CCCCCCCC
Confidence 56899999999999999998664 456 99999876621 122334444555553 45666664
No 119
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=96.94 E-value=0.00019 Score=55.17 Aligned_cols=45 Identities=7% Similarity=-0.023 Sum_probs=35.3
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCce-ecCCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDV-ITNKV 70 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldI-gTAKP 70 (115)
.++|+|+.|+|||.||++|.++ +... |+=|-+.|.+.-+= ..+++
T Consensus 20 GVLi~G~SG~GKS~lAl~Li~r-Gh~l-vaDD~v~i~~~~~~~l~g~~ 65 (171)
T PF07475_consen 20 GVLITGPSGIGKSELALELIKR-GHRL-VADDRVEIRRIGGRTLIGRA 65 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHT-T-EE-EESSEEEEEECTTCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHC-CCeE-EeCCEEEEEECCCCEEEEeC
Confidence 5789999999999999999986 4567 88888888887653 44444
No 120
>PRK14526 adenylate kinase; Provisional
Probab=96.94 E-value=0.00059 Score=52.84 Aligned_cols=32 Identities=9% Similarity=-0.059 Sum_probs=27.7
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
++|+||.|||||+++-.||+.++... |+++.+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~-is~G~l 34 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYH-ISTGDL 34 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCce-eecChH
Confidence 57899999999999999999998877 776554
No 121
>PRK13808 adenylate kinase; Provisional
Probab=96.93 E-value=0.00051 Score=57.32 Aligned_cols=32 Identities=6% Similarity=-0.071 Sum_probs=28.5
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
|||+||.|||||.++..||+.++... |+.|.+
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~-is~gdl 34 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQ-LSTGDM 34 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCce-ecccHH
Confidence 67899999999999999999999888 877553
No 122
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.92 E-value=0.00052 Score=51.99 Aligned_cols=23 Identities=4% Similarity=-0.166 Sum_probs=19.7
Q ss_pred eeeeeccCCCchhHHHHHHhcCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~ 46 (115)
.++|+||+|||||.|+..++...
T Consensus 44 ~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 44 FFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999998653
No 123
>PLN02772 guanylate kinase
Probab=96.91 E-value=0.00098 Score=57.06 Aligned_cols=60 Identities=13% Similarity=0.045 Sum_probs=44.3
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCceecCCCCHHHhcCCCeeeec
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLLD 84 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLid 84 (115)
|.|+....-++|+||+||||++|...|.+.+.... .....-.|-+|.+-|..++.+|+++
T Consensus 129 ~~~~~~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~---------~~~vshTTR~pR~gE~dG~dY~Fvs 188 (398)
T PLN02772 129 GVRGNAEKPIVISGPSGVGKGTLISMLMKEFPSMF---------GFSVSHTTRAPREMEKDGVHYHFTE 188 (398)
T ss_pred CCCCCCCcEEEEECCCCCCHHHHHHHHhhhccccc---------cccccccCCCCcccccCCceEeeCC
Confidence 44554555678899999999999999988765433 1122557888888899998888874
No 124
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.91 E-value=0.0017 Score=53.02 Aligned_cols=67 Identities=4% Similarity=-0.207 Sum_probs=41.3
Q ss_pred eeeeccCCCchhHHHHHHhcCC-------CceEeeccceeeeccCCceecCCCCHHHhcCCCeeeecccCCCCccCHHHH
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP-------DLFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLLDFLDPNTRFTVVDY 97 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~-------~~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLid~ldp~e~ySv~~F 97 (115)
+-|+||+|||||+++..|+.-+ ...+ ++.|.. |+. .++++... +......-+.|++..+
T Consensus 65 IGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~v-i~~D~f--~~~---------~~~l~~~g--~~~~~g~P~s~D~~~l 130 (290)
T TIGR00554 65 ISIAGSVAVGKSTTARILQALLSRWPEHRKVEL-ITTDGF--LHP---------NQVLKERN--LMKKKGFPESYDMHRL 130 (290)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCCCceEE-Eecccc--ccc---------HHHHHHcC--CccccCCChhccHHHH
Confidence 5689999999999997664333 2345 888883 332 23333221 2333344578888888
Q ss_pred HHHHHHHH
Q psy7554 98 RNRALKHT 105 (115)
Q Consensus 98 ~~~A~~~I 105 (115)
.+...+..
T Consensus 131 ~~~L~~Lk 138 (290)
T TIGR00554 131 VKFLSDLK 138 (290)
T ss_pred HHHHHHHH
Confidence 76655444
No 125
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.91 E-value=0.00051 Score=59.19 Aligned_cols=24 Identities=13% Similarity=0.058 Sum_probs=22.0
Q ss_pred eeeeeccCCCchhHHHHHHhcCCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPD 47 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~ 47 (115)
.+||+||.|+|||+||+.+|+.++
T Consensus 67 giLi~GppgTGKTAlA~gIa~eLG 90 (450)
T COG1224 67 GILIVGPPGTGKTALAMGIARELG 90 (450)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhC
Confidence 367899999999999999999986
No 126
>KOG0745|consensus
Probab=96.87 E-value=0.00068 Score=59.68 Aligned_cols=37 Identities=11% Similarity=-0.097 Sum_probs=32.6
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKG 62 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkg 62 (115)
+|+.||||||||-||--||+-+|..| .=||.-++=+.
T Consensus 229 vLllGPtGsGKTllaqTLAr~ldVPf-aIcDcTtLTQA 265 (564)
T KOG0745|consen 229 VLLLGPTGSGKTLLAQTLARVLDVPF-AICDCTTLTQA 265 (564)
T ss_pred EEEECCCCCchhHHHHHHHHHhCCCe-EEecccchhhc
Confidence 67899999999999999999999998 77998877443
No 127
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=96.87 E-value=0.00063 Score=56.40 Aligned_cols=74 Identities=9% Similarity=-0.012 Sum_probs=50.8
Q ss_pred eeeeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCce-ecCCCCHHHhcCCCeeeecccCCCCccCHHHHH
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDV-ITNKVTPEEAEGIPHHLLDFLDPNTRFTVVDYR 98 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldI-gTAKPs~eE~~~IpHHLid~ldp~e~ySv~~F~ 98 (115)
..+||.|+.|+|||.+|++|-++ +... |+=|-..|++.-+- .-++++.--+.-+.=..+|+++...-|-++.++
T Consensus 147 ~GvLi~G~SG~GKSelALeLi~r-Gh~L-VaDD~v~i~~~~~~~L~g~~p~~l~~~lEvRG~GIi~v~~lfG~~av~ 221 (308)
T PRK05428 147 IGVLITGESGIGKSETALELIKR-GHRL-VADDAVDIKRIGPDTLEGRCPELLQHLLEIRGLGIIDVRTLFGATAVR 221 (308)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc-CCce-EecCeEEEEEecCCEEEeeCchhhcchhhhcCCcEEehhhhcCcccee
Confidence 46789999999999999999877 4456 78888899876542 334444433334444567777777666554443
No 128
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=96.85 E-value=0.0011 Score=50.50 Aligned_cols=29 Identities=3% Similarity=-0.460 Sum_probs=26.5
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQV 55 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaD 55 (115)
+-|+|+.|||||+++--|++ ++..+ +++|
T Consensus 8 igitG~igsGKSt~~~~l~~-~g~~v-~d~D 36 (208)
T PRK14731 8 VGVTGGIGSGKSTVCRFLAE-MGCEL-FEAD 36 (208)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCeE-Eecc
Confidence 56899999999999999996 88899 9999
No 129
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.85 E-value=0.00087 Score=60.07 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=23.8
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
+++++||||+|||.||..||+.++...
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~ 512 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALGVHL 512 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhcCCe
Confidence 445999999999999999999998755
No 130
>PLN02674 adenylate kinase
Probab=96.84 E-value=0.00072 Score=54.04 Aligned_cols=33 Identities=9% Similarity=-0.105 Sum_probs=28.8
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
-++|+||.||||+++|-.||++++..- ||++.+
T Consensus 33 ~i~l~G~PGsGKgT~a~~La~~~~~~h-is~Gdl 65 (244)
T PLN02674 33 RLILIGPPGSGKGTQSPIIKDEYCLCH-LATGDM 65 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcE-EchhHH
Confidence 467799999999999999999999887 877554
No 131
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.84 E-value=0.00089 Score=55.77 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=22.6
Q ss_pred eeeeeeccCCCchhHHHHHHhcCCCc
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGPDL 48 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~~~ 48 (115)
..++|+||||||||++...|+..++.
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~i~~ 188 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISAIPP 188 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcccCC
Confidence 45889999999999999999987753
No 132
>PRK13975 thymidylate kinase; Provisional
Probab=96.84 E-value=0.00088 Score=49.18 Aligned_cols=26 Identities=12% Similarity=-0.045 Sum_probs=23.3
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
|+|.|+.|||||+++-.||++++...
T Consensus 5 I~ieG~~GsGKtT~~~~L~~~l~~~~ 30 (196)
T PRK13975 5 IVFEGIDGSGKTTQAKLLAEKLNAFW 30 (196)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 67899999999999999999998643
No 133
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=96.84 E-value=0.00069 Score=49.88 Aligned_cols=29 Identities=7% Similarity=-0.128 Sum_probs=25.9
Q ss_pred eccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 28 CLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 28 ~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
+||+|||||.|+-.||+.++... +..|.+
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~-~~~d~~ 29 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAF-LDGDFL 29 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeE-EeCccC
Confidence 59999999999999999998877 888765
No 134
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.84 E-value=0.0018 Score=54.76 Aligned_cols=65 Identities=15% Similarity=0.049 Sum_probs=43.2
Q ss_pred ceeEeeeeeeccCCCchhHHHHHHhcC----CC---ceEeecccee------ee-----ccCCceecCCCC------HHH
Q psy7554 19 DQVYLSYLSCLPDSVCPHAHQVDLTDG----PD---LFCRTYQVYL------MV-----YKGLDVITNKVT------PEE 74 (115)
Q Consensus 19 ~~~~~~~li~GpTasGKS~lai~LA~~----~~---~eI~IsaDSm------QV-----YkgldIgTAKPs------~eE 74 (115)
..+++ ++||||+|||.++.+||.. .+ .-+ |.+|.. |+ +-++++...+.. ..+
T Consensus 137 g~ii~---lvGptGvGKTTtiakLA~~~~~~~G~~~V~l-it~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~ 212 (374)
T PRK14722 137 GGVFA---LMGPTGVGKTTTTAKLAARCVMRFGASKVAL-LTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE 212 (374)
T ss_pred CcEEE---EECCCCCCHHHHHHHHHHHHHHhcCCCeEEE-EecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH
Confidence 34555 8999999999999999854 22 245 888987 33 236676655543 234
Q ss_pred hcCCCeeeecccC
Q psy7554 75 AEGIPHHLLDFLD 87 (115)
Q Consensus 75 ~~~IpHHLid~ld 87 (115)
+.....-|||...
T Consensus 213 l~~~DlVLIDTaG 225 (374)
T PRK14722 213 LRNKHMVLIDTIG 225 (374)
T ss_pred hcCCCEEEEcCCC
Confidence 4556666777664
No 135
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=96.83 E-value=0.00073 Score=56.00 Aligned_cols=74 Identities=8% Similarity=-0.012 Sum_probs=49.8
Q ss_pred eeeeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccC-CceecCCCCHHHhcCCCeeeecccCCCCccCHHHHH
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKG-LDVITNKVTPEEAEGIPHHLLDFLDPNTRFTVVDYR 98 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkg-ldIgTAKPs~eE~~~IpHHLid~ldp~e~ySv~~F~ 98 (115)
..++|+|+.|+|||++|++|-++ +... |+=|-..|++. =+-.-++++..-+.-+.=..+|+++...-|-++.++
T Consensus 147 ~gvli~G~sg~GKS~lal~Li~r-g~~l-vaDD~~~~~~~~~~~L~g~~p~~l~~~iEvRG~GIi~v~~~fG~~a~~ 221 (304)
T TIGR00679 147 VGVLITGKSGVGKSETALELINR-GHRL-VADDAVEIYRLNGNRLFGRAQELIKHFMEIRGLGIINVERLYGLGITR 221 (304)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc-CCce-eecCeEEEEEecCCEEEEeCChhhCCcEEEeCcEEEEchhhcCcccee
Confidence 35779999999999999999876 4456 77888888876 332233343333334444567777777666555544
No 136
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.81 E-value=0.00093 Score=45.87 Aligned_cols=22 Identities=14% Similarity=0.015 Sum_probs=19.0
Q ss_pred eeeeccCCCchhHHHHHHhcCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~ 46 (115)
++|+||+|+|||.++..++...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHH
Confidence 5689999999999998887654
No 137
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.80 E-value=0.00069 Score=46.14 Aligned_cols=22 Identities=9% Similarity=-0.074 Sum_probs=19.1
Q ss_pred eeeeccCCCchhHHHHHHhcCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~ 46 (115)
++|.||+|+|||.++..+++.+
T Consensus 7 ~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 7 LVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp EEEEE-TTSSHHHHHHHHHHHH
T ss_pred cEEEcCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999876
No 138
>PRK06620 hypothetical protein; Validated
Probab=96.79 E-value=0.0014 Score=50.69 Aligned_cols=30 Identities=10% Similarity=-0.052 Sum_probs=24.9
Q ss_pred eeeeeeccCCCchhHHHHHHhcCCCceEeec
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGPDLFCRTY 53 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~~~eI~Is 53 (115)
.+++|.||+|||||.|+..+|+..+..+ ++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~-~~ 74 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYI-IK 74 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEE-cc
Confidence 3456799999999999999999888766 54
No 139
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.79 E-value=0.00082 Score=56.07 Aligned_cols=33 Identities=9% Similarity=-0.033 Sum_probs=26.5
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceE-eecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFC-RTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI-~IsaDSm 57 (115)
++|.||+|+|||.++..||+.++..+ +|++++.
T Consensus 67 ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~ 100 (327)
T TIGR01650 67 VMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSH 100 (327)
T ss_pred EEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCC
Confidence 56799999999999999999998754 2555443
No 140
>PLN02199 shikimate kinase
Probab=96.75 E-value=0.00089 Score=55.53 Aligned_cols=33 Identities=6% Similarity=-0.334 Sum_probs=29.6
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
+++++|++|||||+++..||+.++... |.+|.+
T Consensus 104 ~I~LIG~~GSGKSTVgr~LA~~Lg~~f-IDtD~l 136 (303)
T PLN02199 104 SMYLVGMMGSGKTTVGKLMSKVLGYTF-FDCDTL 136 (303)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCE-EehHHH
Confidence 456699999999999999999999999 888863
No 141
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.75 E-value=0.00087 Score=48.84 Aligned_cols=32 Identities=3% Similarity=-0.250 Sum_probs=25.1
Q ss_pred eeeeccCCCchhHHHHHHhcCC---C--ceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP---D--LFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~---~--~eI~IsaDSm 57 (115)
++++|+.|||||++|..||+.+ + ..+ ++.|.+
T Consensus 7 i~~~G~~GsGKST~a~~la~~l~~~g~~v~~-id~D~~ 43 (175)
T PRK00889 7 VWFTGLSGAGKTTIARALAEKLREAGYPVEV-LDGDAV 43 (175)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEE-EcCccH
Confidence 4589999999999999999876 2 234 777754
No 142
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.75 E-value=0.0011 Score=60.41 Aligned_cols=36 Identities=19% Similarity=0.103 Sum_probs=27.9
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhcCCCceEeeccc
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQV 55 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~~~~~eI~IsaD 55 (115)
++|.. +++++||||+|||.+|..||+.++... +-.|
T Consensus 485 ~kp~~---~~Lf~GP~GvGKT~lAk~LA~~l~~~~-i~id 520 (758)
T PRK11034 485 HKPVG---SFLFAGPTGVGKTEVTVQLSKALGIEL-LRFD 520 (758)
T ss_pred CCCcc---eEEEECCCCCCHHHHHHHHHHHhCCCc-EEee
Confidence 34544 455999999999999999999998765 4333
No 143
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.74 E-value=0.00093 Score=54.22 Aligned_cols=24 Identities=8% Similarity=-0.183 Sum_probs=20.8
Q ss_pred eeeeeeccCCCchhHHHHHHhcCC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~ 46 (115)
.+++|+||||||||++...|...+
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999999888664
No 144
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=96.73 E-value=0.0016 Score=49.61 Aligned_cols=58 Identities=9% Similarity=-0.116 Sum_probs=39.4
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee--eeccCCceecCCCCHHHhcCCCeeeecccCCCCc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL--MVYKGLDVITNKVTPEEAEGIPHHLLDFLDPNTR 91 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm--QVYkgldIgTAKPs~eE~~~IpHHLid~ldp~e~ 91 (115)
+.|+|+.|||||+++..|+. ++..+ |++|.+ ++|+. ..|..++ -+.++.-++++++..
T Consensus 4 igitG~igsGKst~~~~l~~-~g~~v-id~D~i~~~~~~~-----~~~~~~~--l~~~fg~~~~~~~g~ 63 (200)
T PRK14734 4 IGLTGGIGSGKSTVADLLSS-EGFLI-VDADQVARDIVEP-----GQPALAE--LAEAFGDDILNPDGT 63 (200)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCeE-EeCcHHHHHHHhc-----CCHHHHH--HHHHhCccccCCCCh
Confidence 56899999999999999997 78888 999975 66632 1111122 234455666666543
No 145
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.73 E-value=0.0013 Score=48.93 Aligned_cols=22 Identities=9% Similarity=-0.280 Sum_probs=18.9
Q ss_pred eeeeccCCCchhHHHHHHhcCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~ 46 (115)
++|+||||||||+|...|+..+
T Consensus 28 i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 28 ILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 4599999999999998888654
No 146
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.73 E-value=0.00091 Score=51.99 Aligned_cols=25 Identities=12% Similarity=-0.081 Sum_probs=21.2
Q ss_pred eeeeeeccCCCchhHHHHHHhcCCC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGPD 47 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~~ 47 (115)
-.++|+||||||||++...|.+.++
T Consensus 128 ~~ili~G~tGSGKTT~l~all~~i~ 152 (270)
T PF00437_consen 128 GNILISGPTGSGKTTLLNALLEEIP 152 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHCH
T ss_pred eEEEEECCCccccchHHHHHhhhcc
Confidence 3567999999999999998887664
No 147
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.72 E-value=0.0011 Score=52.08 Aligned_cols=27 Identities=7% Similarity=-0.054 Sum_probs=22.9
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
.+++.||.|+|||.||..+|+.++..+
T Consensus 32 ~~ll~Gp~G~GKT~la~~ia~~~~~~~ 58 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAHIIANEMGVNL 58 (305)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 455799999999999999999887543
No 148
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=96.70 E-value=0.0044 Score=53.18 Aligned_cols=82 Identities=9% Similarity=-0.083 Sum_probs=60.3
Q ss_pred eeeeeccCCCchhHHHHHHhcCCC-----ceEeeccceee----------eccCCceecCCCCHHHhcCCCeeeecccCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPD-----LFCRTYQVYLM----------VYKGLDVITNKVTPEEAEGIPHHLLDFLDP 88 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~-----~eI~IsaDSmQ----------VYkgldIgTAKPs~eE~~~IpHHLid~ldp 88 (115)
-++|+||..||||+|+.-||.++- ..| |-+|-=| .++-. +.-++.+|+.-..|.|+|...|
T Consensus 75 ~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~i-iDaDvGQ~ei~pPg~ISL~~~~---s~~~~L~~l~~~~~~FvG~isP 150 (398)
T COG1341 75 VVMVVGPVDSGKSTLTTYLANKLLARGRKVAI-IDADVGQSEIGPPGFISLAFPE---SPVISLSELEPFTLYFVGSISP 150 (398)
T ss_pred EEEEECCcCcCHHHHHHHHHHHHhhcCceEEE-EeCCCCCcccCCCceEEeeccc---CCCCCHHHcCccceEEEeccCC
Confidence 356899999999999999987663 456 8887555 33322 3333489999999999999999
Q ss_pred CCccCHHHHHHHHHHHHhhhhhc
Q psy7554 89 NTRFTVVDYRNRALKHTGLKVDL 111 (115)
Q Consensus 89 ~e~ySv~~F~~~A~~~I~~i~~~ 111 (115)
...+. ++..-+.++++...+.
T Consensus 151 ~~~~~--~~i~~v~rL~~~a~~~ 171 (398)
T COG1341 151 QGFPG--RYIAGVARLVDLAKKE 171 (398)
T ss_pred CCChH--HHHHHHHHHHHHhhcc
Confidence 98754 7777777766665543
No 149
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=96.69 E-value=0.00089 Score=50.98 Aligned_cols=33 Identities=9% Similarity=-0.155 Sum_probs=26.1
Q ss_pred eeeeccCCCchhHHHHHHhcCCCce-Eeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLF-CRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~e-I~IsaDSm 57 (115)
|++.||++||||++|..|.+.+... ..++.|++
T Consensus 4 I~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f 37 (174)
T PF07931_consen 4 IILNGPSSSGKSSIARALQERLPEPWLHLSVDTF 37 (174)
T ss_dssp EEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChH
Confidence 4579999999999999999999765 44888853
No 150
>PRK05439 pantothenate kinase; Provisional
Probab=96.66 E-value=0.0034 Score=51.84 Aligned_cols=67 Identities=6% Similarity=-0.227 Sum_probs=43.3
Q ss_pred eeeeccCCCchhHHHHHHhcCC-------CceEeeccceeeeccCCceecCCCCHHHhcCCCeeeecccCCCCccCHHHH
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP-------DLFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLLDFLDPNTRFTVVDY 97 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~-------~~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLid~ldp~e~ySv~~F 97 (115)
+.|+||.|||||++|..|++.+ ...+ |+.|.. |+.. +++. .+.+++-.+.-+.|+...|
T Consensus 89 IgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~v-i~~DdF--y~~~---------~~l~--~~~l~~~kg~Pes~D~~~l 154 (311)
T PRK05439 89 IGIAGSVAVGKSTTARLLQALLSRWPEHPKVEL-VTTDGF--LYPN---------AVLE--ERGLMKRKGFPESYDMRAL 154 (311)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhCCCCceEE-Eecccc--ccCH---------HHHh--hhhccccCCCcccccHHHH
Confidence 6789999999999999998744 2456 999986 4322 2222 2334443344557888777
Q ss_pred HHHHHHHH
Q psy7554 98 RNRALKHT 105 (115)
Q Consensus 98 ~~~A~~~I 105 (115)
.+...++.
T Consensus 155 ~~~L~~Lk 162 (311)
T PRK05439 155 LRFLSDVK 162 (311)
T ss_pred HHHHHHHH
Confidence 65554443
No 151
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.66 E-value=0.001 Score=53.24 Aligned_cols=41 Identities=7% Similarity=-0.034 Sum_probs=35.5
Q ss_pred eeeeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCcee
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVI 66 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIg 66 (115)
..|=|=||.|||||++|..||++++-.- .||=-+||-+...
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~y---ldTGamYRa~a~~ 45 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHY---LDTGAMYRAVALA 45 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCe---ecccHHHHHHHHH
Confidence 3466789999999999999999999866 8999999987655
No 152
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.63 E-value=0.0014 Score=48.84 Aligned_cols=23 Identities=0% Similarity=-0.301 Sum_probs=19.4
Q ss_pred eeeeeccCCCchhHHHHHHhcCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~ 46 (115)
+++|.||+|||||.||..+++..
T Consensus 40 ~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 40 FLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 45579999999999999998654
No 153
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=96.63 E-value=0.0015 Score=57.42 Aligned_cols=35 Identities=3% Similarity=-0.252 Sum_probs=30.5
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeec
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVY 60 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVY 60 (115)
++++|+.|||||.+|.++++..+.++ ||.|.+.-|
T Consensus 372 Vil~G~pGSGKST~A~~l~~~~g~~~-vn~D~lg~~ 406 (526)
T TIGR01663 372 VIAVGFPGAGKSHFCKKFFQPAGYKH-VNADTLGST 406 (526)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE-ECcHHHHHH
Confidence 45899999999999999999988888 999987443
No 154
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.62 E-value=0.0012 Score=55.70 Aligned_cols=29 Identities=14% Similarity=-0.033 Sum_probs=24.0
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCCCc
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGPDL 48 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~~~ 48 (115)
.++++++ ++||+|||||.||-.||+.++.
T Consensus 76 ~~r~il~---L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 76 ERKQILY---LLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCCcEEE---EECCCCCCHHHHHHHHHHHHhh
Confidence 3456644 8999999999999999988854
No 155
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.61 E-value=0.0013 Score=53.01 Aligned_cols=29 Identities=7% Similarity=-0.106 Sum_probs=24.9
Q ss_pred EeeeeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 22 YLSYLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 22 ~~~~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
+-.+++.||.|+|||.||..+|+.++..+
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l~~~~ 79 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEMGVNI 79 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 44566899999999999999999987755
No 156
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.60 E-value=0.0029 Score=45.05 Aligned_cols=36 Identities=8% Similarity=-0.204 Sum_probs=25.8
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
-.+.++.. |.||+|||||+|+..+. .+.+.+..|.+
T Consensus 12 i~~ge~v~---I~GpSGsGKSTLl~~l~---~G~i~~~g~di 47 (107)
T cd00820 12 VYGKVGVL---ITGDSGIGKTELALELI---KRKHRLVGDDN 47 (107)
T ss_pred EcCCEEEE---EEcCCCCCHHHHHHHhh---CCeEEEeeEeH
Confidence 34555554 89999999999998887 55554555544
No 157
>PLN02318 phosphoribulokinase/uridine kinase
Probab=96.60 E-value=0.0022 Score=57.97 Aligned_cols=43 Identities=12% Similarity=-0.052 Sum_probs=33.8
Q ss_pred eccCCCceeEeeeeeeccCCCchhHHHHHHhcCCCc-eEeecccee
Q psy7554 13 LLTGTPDQVYLSYLSCLPDSVCPHAHQVDLTDGPDL-FCRTYQVYL 57 (115)
Q Consensus 13 ~~~~~~~~~~~~~li~GpTasGKS~lai~LA~~~~~-eI~IsaDSm 57 (115)
++.-.++.+++ +-|+||+|||||+|+..|+..+.. .+ |+.|..
T Consensus 57 lL~~~~~~riI-IGIaGpSGSGKTTLAk~LaglLp~vgv-IsmDdy 100 (656)
T PLN02318 57 LLAQKNDGIIL-VGVAGPSGAGKTVFTEKVLNFMPSIAV-ISMDNY 100 (656)
T ss_pred HHHhcCCCeEE-EEEECCCCCcHHHHHHHHHhhCCCcEE-EEEcce
Confidence 44445566554 779999999999999999998854 45 899985
No 158
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.60 E-value=0.0016 Score=49.05 Aligned_cols=22 Identities=9% Similarity=0.095 Sum_probs=18.9
Q ss_pred eeeeeccCCCchhHHHHHHhcC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~ 45 (115)
.+++.||+|+|||.||..+|.+
T Consensus 49 ~l~l~G~~G~GKThLa~ai~~~ 70 (178)
T PF01695_consen 49 NLILYGPPGTGKTHLAVAIANE 70 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEhhHhHHHHHHHHHHHHH
Confidence 4667999999999999999853
No 159
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=96.60 E-value=0.0012 Score=54.52 Aligned_cols=33 Identities=9% Similarity=-0.110 Sum_probs=29.3
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
+||-|++|+|||.+|-+||.+++--+-|+.||.
T Consensus 92 ILIGGasGVGkStIA~ElA~rLgI~~visTD~I 124 (299)
T COG2074 92 ILIGGASGVGKSTIAGELARRLGIRSVISTDSI 124 (299)
T ss_pred EEecCCCCCChhHHHHHHHHHcCCceeecchHH
Confidence 578999999999999999999997554899985
No 160
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.58 E-value=0.0018 Score=42.31 Aligned_cols=22 Identities=9% Similarity=-0.151 Sum_probs=17.6
Q ss_pred eeeeccCCCchhHHHHHHhcCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~ 46 (115)
++|.||||+|||..++.++...
T Consensus 3 ~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 3 VLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred EEEECCCCCchhHHHHHHHHHH
Confidence 5689999999998877766543
No 161
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.58 E-value=0.0016 Score=53.82 Aligned_cols=25 Identities=4% Similarity=-0.203 Sum_probs=22.1
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCc
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDL 48 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~ 48 (115)
.++|+||||||||++...|...++.
T Consensus 162 nili~G~tgSGKTTll~aL~~~ip~ 186 (332)
T PRK13900 162 NIIISGGTSTGKTTFTNAALREIPA 186 (332)
T ss_pred cEEEECCCCCCHHHHHHHHHhhCCC
Confidence 6889999999999999999887753
No 162
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=96.58 E-value=0.0021 Score=49.14 Aligned_cols=31 Identities=10% Similarity=-0.278 Sum_probs=26.5
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
+.|+|+.|||||+++-.|++ ++..+ |++|.+
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~-i~~D~i 32 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEE-LGAFG-ISADRL 32 (196)
T ss_pred EEEECCCCccHHHHHHHHHH-CCCEE-EecchH
Confidence 45799999999999998875 67788 999865
No 163
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.58 E-value=0.0017 Score=52.00 Aligned_cols=31 Identities=10% Similarity=-0.104 Sum_probs=24.1
Q ss_pred eeeeccCCCchhHHHHHHhcCC-------CceEeeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP-------DLFCRTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~-------~~eI~IsaDS 56 (115)
++++||||||||.++..||..+ ..-+ |.+|.
T Consensus 197 i~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~l-i~~D~ 234 (282)
T TIGR03499 197 IALVGPTGVGKTTTLAKLAARFVLEHGNKKVAL-ITTDT 234 (282)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEE-EECCc
Confidence 3489999999999988888543 2345 88897
No 164
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.57 E-value=0.0012 Score=55.16 Aligned_cols=22 Identities=0% Similarity=-0.197 Sum_probs=18.8
Q ss_pred eeeeccCCCchhHHHHHHhcCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~ 46 (115)
++|+||||||||++...|++.+
T Consensus 137 ilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 137 VFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4599999999999988887654
No 165
>PRK00023 cmk cytidylate kinase; Provisional
Probab=96.57 E-value=0.0012 Score=51.22 Aligned_cols=36 Identities=8% Similarity=-0.109 Sum_probs=29.5
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKG 62 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkg 62 (115)
-+.|.||.|||||.++..||++++... + |+=.+||.
T Consensus 6 ~i~i~g~~gsGksti~~~la~~~~~~~-~--~~~~~~r~ 41 (225)
T PRK00023 6 VIAIDGPAGSGKGTVAKILAKKLGFHY-L--DTGAMYRA 41 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCc-c--cCchhHHH
Confidence 366899999999999999999999877 4 44456665
No 166
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.56 E-value=0.0007 Score=52.78 Aligned_cols=33 Identities=6% Similarity=-0.154 Sum_probs=26.8
Q ss_pred eeeeccCCCchhHH-HHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAH-QVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~l-ai~LA~~~~~eI~IsaDSm 57 (115)
.++.||.|||||++ +..++.-++++++||+|-|
T Consensus 5 ~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~i 38 (187)
T COG4185 5 DIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEI 38 (187)
T ss_pred EEEecCCCCCceeeeeccchhhcCCeEEECHHHH
Confidence 36899999999998 5666666777777999976
No 167
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=96.56 E-value=0.0025 Score=49.56 Aligned_cols=32 Identities=6% Similarity=-0.227 Sum_probs=28.4
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
+-|+|..|||||+++..|++.++..+ +++|-+
T Consensus 9 IglTG~iGsGKStv~~~l~~~lg~~v-idaD~i 40 (204)
T PRK14733 9 IGITGGIASGKSTATRILKEKLNLNV-VCADTI 40 (204)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE-EeccHH
Confidence 45699999999999999999888888 888865
No 168
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.56 E-value=0.00095 Score=56.24 Aligned_cols=30 Identities=7% Similarity=-0.044 Sum_probs=25.7
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~ 46 (115)
.|+..|.+++|.||+|+|||.|+..+|..+
T Consensus 143 ~~~~~~~~l~l~G~~G~GKThL~~ai~~~~ 172 (450)
T PRK00149 143 NPGKAYNPLFIYGGVGLGKTHLLHAIGNYI 172 (450)
T ss_pred CcCccCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 456788899999999999999998888664
No 169
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.55 E-value=0.0021 Score=51.61 Aligned_cols=35 Identities=9% Similarity=-0.041 Sum_probs=25.6
Q ss_pred eeEeeeeeeccCCCchhHHHHHHhcCCCceEe-ecc
Q psy7554 20 QVYLSYLSCLPDSVCPHAHQVDLTDGPDLFCR-TYQ 54 (115)
Q Consensus 20 ~~~~~~li~GpTasGKS~lai~LA~~~~~eI~-Isa 54 (115)
+-.-|+|+.||.|+|||+||.-+|+.++..+. +|+
T Consensus 48 ~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg 83 (233)
T PF05496_consen 48 EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSG 83 (233)
T ss_dssp S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEEC
T ss_pred CCcceEEEECCCccchhHHHHHHHhccCCCeEeccc
Confidence 34457888999999999999999999988762 444
No 170
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=96.54 E-value=0.0011 Score=46.63 Aligned_cols=35 Identities=9% Similarity=-0.125 Sum_probs=22.4
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMV 59 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQV 59 (115)
+++.+|||||||-+++.++.++..-+.+-+-+.++
T Consensus 28 ~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~p~~~l 62 (184)
T PF04851_consen 28 VLLNAPTGSGKTIIALALILELARKVLIVAPNISL 62 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHCEEEEEESSHHH
T ss_pred EEEEECCCCCcChhhhhhhhccccceeEecCHHHH
Confidence 44799999999999888665443232244444333
No 171
>PRK06526 transposase; Provisional
Probab=96.54 E-value=0.0018 Score=51.58 Aligned_cols=22 Identities=9% Similarity=-0.062 Sum_probs=18.3
Q ss_pred eeeeeccCCCchhHHHHHHhcC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~ 45 (115)
.++++||+|+|||.||..|+.+
T Consensus 100 nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred eEEEEeCCCCchHHHHHHHHHH
Confidence 3567999999999999988753
No 172
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.0017 Score=55.86 Aligned_cols=26 Identities=15% Similarity=-0.055 Sum_probs=22.2
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
||.+||||+|||..|.+||+-.+..-
T Consensus 53 ILMIGpTGVGKTEIARRLAkl~~aPF 78 (444)
T COG1220 53 ILMIGPTGVGKTEIARRLAKLAGAPF 78 (444)
T ss_pred eEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 45699999999999999998776644
No 173
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.49 E-value=0.0017 Score=53.24 Aligned_cols=22 Identities=14% Similarity=0.021 Sum_probs=18.7
Q ss_pred eeeeccCCCchhHHHHHHhcCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~ 46 (115)
++|+||||||||++...|...+
T Consensus 125 ili~G~tGSGKTT~l~al~~~i 146 (343)
T TIGR01420 125 ILVTGPTGSGKSTTLASMIDYI 146 (343)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 5699999999999988877644
No 174
>PRK14529 adenylate kinase; Provisional
Probab=96.49 E-value=0.0015 Score=51.52 Aligned_cols=29 Identities=14% Similarity=-0.014 Sum_probs=25.1
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQ 54 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~Isa 54 (115)
++|.||.|||||++|..||+.++... ||.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~-is~ 31 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAH-IES 31 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCC-ccc
Confidence 67899999999999999999998766 543
No 175
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.48 E-value=0.0028 Score=50.26 Aligned_cols=42 Identities=14% Similarity=-0.024 Sum_probs=33.4
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeeccceee-eccCCceecCCCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLM-VYKGLDVITNKVT 71 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQ-VYkgldIgTAKPs 71 (115)
++.|+||.|+|||.|-..+|. + ||.||-- .|+|=++-|.+|.
T Consensus 31 ~iaitGPSG~GKStllk~va~-----L-isp~~G~l~f~Ge~vs~~~pe 73 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVAS-----L-ISPTSGTLLFEGEDVSTLKPE 73 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHh-----c-cCCCCceEEEcCccccccChH
Confidence 456899999999999998874 3 5555544 5799999999994
No 176
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.48 E-value=0.0018 Score=53.36 Aligned_cols=29 Identities=10% Similarity=0.004 Sum_probs=24.5
Q ss_pred eeEeeeeeeccCCCchhHHHHHHhcCCCc
Q psy7554 20 QVYLSYLSCLPDSVCPHAHQVDLTDGPDL 48 (115)
Q Consensus 20 ~~~~~~li~GpTasGKS~lai~LA~~~~~ 48 (115)
.+.-++|+.||.|+|||.+|..+|+.+++
T Consensus 36 ~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 36 RIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred CCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 34455669999999999999999999875
No 177
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.47 E-value=0.0014 Score=47.15 Aligned_cols=23 Identities=9% Similarity=-0.168 Sum_probs=20.7
Q ss_pred eeeeccCCCchhHHHHHHhcCCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD 47 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~ 47 (115)
|+|.||.|||||+++-.||+.++
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~ 25 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLE 25 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999998873
No 178
>PRK07429 phosphoribulokinase; Provisional
Probab=96.46 E-value=0.0033 Score=51.94 Aligned_cols=37 Identities=11% Similarity=-0.107 Sum_probs=29.2
Q ss_pred ceeEeeeeeeccCCCchhHHHHHHhcCCC---ceEeecccee
Q psy7554 19 DQVYLSYLSCLPDSVCPHAHQVDLTDGPD---LFCRTYQVYL 57 (115)
Q Consensus 19 ~~~~~~~li~GpTasGKS~lai~LA~~~~---~eI~IsaDSm 57 (115)
++.++ +-|+|++|||||+|+..|++.++ +.+ |+.|..
T Consensus 6 ~~~~I-IgI~G~SGSGKSTla~~L~~ll~~~~~~v-i~~Dd~ 45 (327)
T PRK07429 6 DRPVL-LGVAGDSGCGKTTFLRGLADLLGEELVTV-ICTDDY 45 (327)
T ss_pred CCCEE-EEEECCCCCCHHHHHHHHHhHhccCceEE-EEeccc
Confidence 44444 56899999999999999998876 456 788864
No 179
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.46 E-value=0.0026 Score=51.01 Aligned_cols=31 Identities=6% Similarity=-0.319 Sum_probs=25.5
Q ss_pred eeeeccCCCchhHHHHHHhcCC---CceEeeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP---DLFCRTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~---~~eI~IsaDS 56 (115)
+-|+||+|||||+|+..|+..+ ++.+ |+.|.
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll~~~~~~v-i~~Dd 35 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLFGSDLVTV-ICLDD 35 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCCceEE-EECcc
Confidence 3579999999999999999776 3556 88883
No 180
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.45 E-value=0.0026 Score=51.37 Aligned_cols=24 Identities=8% Similarity=-0.079 Sum_probs=21.1
Q ss_pred eeeeeccCCCchhHHHHHHhcCCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPD 47 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~ 47 (115)
+++|+||||||||+|...|+..+.
T Consensus 146 ~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 146 NIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred EEEEECCCCCCHHHHHHHHHccCC
Confidence 677999999999999998987763
No 181
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.44 E-value=0.0015 Score=51.07 Aligned_cols=24 Identities=8% Similarity=-0.236 Sum_probs=20.8
Q ss_pred EeeeeeeccCCCchhHHHHHHhcC
Q psy7554 22 YLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 22 ~~~~li~GpTasGKS~lai~LA~~ 45 (115)
-.++++.||+|+|||.+|..+|+.
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHH
Confidence 356788999999999999999875
No 182
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=96.44 E-value=0.0023 Score=53.81 Aligned_cols=35 Identities=9% Similarity=-0.179 Sum_probs=30.1
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee--eecc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL--MVYK 61 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm--QVYk 61 (115)
+.|+|.-|||||+++-.|++ ++..+ |++|.+ ++|+
T Consensus 4 IgltG~igsGKStv~~~L~~-~G~~v-idaD~i~~~l~~ 40 (395)
T PRK03333 4 IGLTGGIGAGKSTVAARLAE-LGAVV-VDADVLAREVVE 40 (395)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCeE-EehHHHHHHHhc
Confidence 56799999999999999997 89999 999965 4554
No 183
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.43 E-value=0.002 Score=53.76 Aligned_cols=27 Identities=7% Similarity=-0.053 Sum_probs=23.9
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
++|+.||+|+|||.+|..+|.+++...
T Consensus 167 gvLL~GppGtGKT~lAkaia~~~~~~~ 193 (389)
T PRK03992 167 GVLLYGPPGTGKTLLAKAVAHETNATF 193 (389)
T ss_pred ceEEECCCCCChHHHHHHHHHHhCCCE
Confidence 467799999999999999999888765
No 184
>PRK12377 putative replication protein; Provisional
Probab=96.43 E-value=0.0015 Score=52.02 Aligned_cols=23 Identities=0% Similarity=-0.057 Sum_probs=20.2
Q ss_pred eeeeeccCCCchhHHHHHHhcCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~ 46 (115)
++++.||+|+|||.||..+|..+
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l 125 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRL 125 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999998765
No 185
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.43 E-value=0.0021 Score=52.57 Aligned_cols=27 Identities=7% Similarity=-0.053 Sum_probs=23.9
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
++++.||+|+|||.+|..+|..++...
T Consensus 158 gvLL~GppGtGKT~lakaia~~l~~~~ 184 (364)
T TIGR01242 158 GVLLYGPPGTGKTLLAKAVAHETNATF 184 (364)
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCCCE
Confidence 367899999999999999999988665
No 186
>PHA02244 ATPase-like protein
Probab=96.43 E-value=0.002 Score=55.04 Aligned_cols=26 Identities=8% Similarity=-0.110 Sum_probs=23.1
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
++|.||||+|||.||..+|..++...
T Consensus 122 VLL~GppGtGKTtLA~aLA~~lg~pf 147 (383)
T PHA02244 122 VFLKGGAGSGKNHIAEQIAEALDLDF 147 (383)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 55699999999999999999988765
No 187
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.42 E-value=0.003 Score=47.82 Aligned_cols=25 Identities=12% Similarity=0.288 Sum_probs=20.3
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhc
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~ 44 (115)
.|.++++ |+|++|+|||.++.++|.
T Consensus 11 ~~G~l~l---I~G~~G~GKT~~~~~~~~ 35 (242)
T cd00984 11 QPGDLII---IAARPSMGKTAFALNIAE 35 (242)
T ss_pred CCCeEEE---EEeCCCCCHHHHHHHHHH
Confidence 3556766 999999999999888764
No 188
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.42 E-value=0.0029 Score=53.60 Aligned_cols=78 Identities=9% Similarity=0.020 Sum_probs=47.2
Q ss_pred eeeccCCCchhHHHHHHhcCC---------CceEeeccce--------eeeccC---CceecCCCCH------HHhcCCC
Q psy7554 26 LSCLPDSVCPHAHQVDLTDGP---------DLFCRTYQVY--------LMVYKG---LDVITNKVTP------EEAEGIP 79 (115)
Q Consensus 26 li~GpTasGKS~lai~LA~~~---------~~eI~IsaDS--------mQVYkg---ldIgTAKPs~------eE~~~Ip 79 (115)
+++||||||||+.+..||..+ ..-+ |++|. ++.|-. +++....... ++.....
T Consensus 178 ~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~l-it~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~~~D 256 (388)
T PRK12723 178 ILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKI-ITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSKDFD 256 (388)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEE-EeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhCCCC
Confidence 479999999999999998543 2345 89998 555655 3444443311 2335667
Q ss_pred eeeecccCCCCccCHHHHHHHHHHHHh
Q psy7554 80 HHLLDFLDPNTRFTVVDYRNRALKHTG 106 (115)
Q Consensus 80 HHLid~ldp~e~ySv~~F~~~A~~~I~ 106 (115)
+=+||...-.. .+..+ ..+..+.++
T Consensus 257 lVLIDTaGr~~-~~~~~-l~el~~~l~ 281 (388)
T PRK12723 257 LVLVDTIGKSP-KDFMK-LAEMKELLN 281 (388)
T ss_pred EEEEcCCCCCc-cCHHH-HHHHHHHHH
Confidence 77777775543 23322 344444444
No 189
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.42 E-value=0.0021 Score=53.23 Aligned_cols=23 Identities=0% Similarity=-0.224 Sum_probs=20.1
Q ss_pred eeeeeccCCCchhHHHHHHhcCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~ 46 (115)
.++|+|+||||||++...|+..+
T Consensus 146 nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 146 NIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999988754
No 190
>PRK09087 hypothetical protein; Validated
Probab=96.42 E-value=0.0028 Score=49.34 Aligned_cols=29 Identities=7% Similarity=-0.121 Sum_probs=24.3
Q ss_pred eeeccCCCchhHHHHHHhcCCCceEeeccc
Q psy7554 26 LSCLPDSVCPHAHQVDLTDGPDLFCRTYQV 55 (115)
Q Consensus 26 li~GpTasGKS~lai~LA~~~~~eI~IsaD 55 (115)
+|.||+|||||.|+..+++..+... |+.+
T Consensus 48 ~l~G~~GsGKThLl~~~~~~~~~~~-i~~~ 76 (226)
T PRK09087 48 VLAGPVGSGKTHLASIWREKSDALL-IHPN 76 (226)
T ss_pred EEECCCCCCHHHHHHHHHHhcCCEE-ecHH
Confidence 4599999999999999998877766 6664
No 191
>KOG3347|consensus
Probab=96.41 E-value=0.0023 Score=49.46 Aligned_cols=51 Identities=14% Similarity=-0.014 Sum_probs=38.5
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeecc----ceeeeccCCceecCCCCHHHh
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQ----VYLMVYKGLDVITNKVTPEEA 75 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~Isa----DSmQVYkgldIgTAKPs~eE~ 75 (115)
-|||+|+.|+|||.|+-+||+.++.+- |+. ---++|-|.|=.=..|-.+|.
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~~~~-i~isd~vkEn~l~~gyDE~y~c~i~DEd 63 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTGLEY-IEISDLVKENNLYEGYDEEYKCHILDED 63 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhCCce-EehhhHHhhhcchhcccccccCccccHH
Confidence 378999999999999999999999876 443 234677777766666655553
No 192
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.40 E-value=0.0027 Score=48.61 Aligned_cols=22 Identities=14% Similarity=-0.102 Sum_probs=20.1
Q ss_pred eeeccCCCchhHHHHHHhcCCC
Q psy7554 26 LSCLPDSVCPHAHQVDLTDGPD 47 (115)
Q Consensus 26 li~GpTasGKS~lai~LA~~~~ 47 (115)
+|.||.|||||.|+..++..++
T Consensus 47 ~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 47 LITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred EEEcCCCCCHHHHHHHHHHhcC
Confidence 4899999999999999998876
No 193
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.40 E-value=0.0022 Score=46.19 Aligned_cols=25 Identities=8% Similarity=-0.189 Sum_probs=19.7
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
|.|+|+-++|||+|+-+||+. |..+
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~ 26 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPV 26 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeE
Confidence 578999999999999999988 6666
No 194
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.40 E-value=0.0028 Score=42.42 Aligned_cols=23 Identities=13% Similarity=-0.068 Sum_probs=19.5
Q ss_pred eeeeccCCCchhHHHHHHhcCCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD 47 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~ 47 (115)
++|+|+.|||||+|...|+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 57899999999999999996553
No 195
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.39 E-value=0.0022 Score=49.32 Aligned_cols=26 Identities=8% Similarity=-0.197 Sum_probs=23.8
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
++++|+-|+|||+++..||+.+|...
T Consensus 5 IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 5 IVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred EEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 45599999999999999999999877
No 196
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.39 E-value=0.0021 Score=50.63 Aligned_cols=23 Identities=17% Similarity=-0.058 Sum_probs=20.3
Q ss_pred eeeeccCCCchhHHHHHHhcCCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD 47 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~ 47 (115)
+++.||+|+|||.+|..+|+.+.
T Consensus 39 lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 39 LLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 45799999999999999998774
No 197
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.39 E-value=0.0015 Score=53.99 Aligned_cols=29 Identities=7% Similarity=-0.015 Sum_probs=24.4
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHhcCC
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA~~~ 46 (115)
|+..|..++|.||+|+|||.|+..+|..+
T Consensus 132 ~~~~~n~l~l~G~~G~GKThL~~ai~~~l 160 (405)
T TIGR00362 132 PGKAYNPLFIYGGVGLGKTHLLHAIGNEI 160 (405)
T ss_pred cCccCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 55678888899999999999998888654
No 198
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.38 E-value=0.0033 Score=54.53 Aligned_cols=32 Identities=6% Similarity=-0.228 Sum_probs=25.2
Q ss_pred eeeeccCCCchhHHHHHHhcCC-----CceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP-----DLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~-----~~eI~IsaDSm 57 (115)
++++||||||||.++..||..+ ..-+ |.+|..
T Consensus 244 I~LVGptGvGKTTTiaKLA~~L~~~GkkVgl-I~aDt~ 280 (436)
T PRK11889 244 IALIGPTGVGKTTTLAKMAWQFHGKKKTVGF-ITTDHS 280 (436)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCcEEE-EecCCc
Confidence 4589999999999999998543 3446 889865
No 199
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=96.37 E-value=0.0017 Score=58.00 Aligned_cols=39 Identities=10% Similarity=-0.125 Sum_probs=32.4
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCce
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDV 65 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldI 65 (115)
.+.|.||.|||||.+|..||++++-.. .|+=-+||.+..
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~~~~---~~~g~~~r~~~~ 41 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLGYAY---LDTGAMYRACAW 41 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE---eecCcEeHHHHH
Confidence 367899999999999999999999877 455558988663
No 200
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.37 E-value=0.0017 Score=54.64 Aligned_cols=22 Identities=9% Similarity=-0.031 Sum_probs=19.0
Q ss_pred eeeeccCCCchhHHHHHHhcCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~ 46 (115)
++|+||||||||++...|.+.+
T Consensus 152 ilI~G~TGSGKTT~l~al~~~i 173 (372)
T TIGR02525 152 GLICGETGSGKSTLAASIYQHC 173 (372)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999988887654
No 201
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.37 E-value=0.0034 Score=42.65 Aligned_cols=23 Identities=9% Similarity=-0.204 Sum_probs=19.8
Q ss_pred eeeeeccCCCchhHHHHHHhcCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~ 46 (115)
-+.++|++|||||+|...++...
T Consensus 5 ~i~~~G~~g~GKttl~~~l~~~~ 27 (168)
T cd04163 5 FVAIVGRPNVGKSTLLNALVGQK 27 (168)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 36789999999999999998654
No 202
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.36 E-value=0.0037 Score=53.79 Aligned_cols=32 Identities=3% Similarity=-0.259 Sum_probs=25.7
Q ss_pred eeeeccCCCchhHHHHHHhcC-----CCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDG-----PDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~-----~~~eI~IsaDSm 57 (115)
++++||+|||||+++.+||.. ....+ |++|..
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~~G~kV~l-V~~D~~ 139 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQRKGFKPCL-VCADTF 139 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEE-EcCccc
Confidence 458999999999999999843 34567 999974
No 203
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=96.36 E-value=0.0031 Score=47.91 Aligned_cols=61 Identities=8% Similarity=-0.142 Sum_probs=40.1
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee--eeccCCceecCCCCHHHh-cCCCeeeecccCCCCccCHH
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL--MVYKGLDVITNKVTPEEA-EGIPHHLLDFLDPNTRFTVV 95 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm--QVYkgldIgTAKPs~eE~-~~IpHHLid~ldp~e~ySv~ 95 (115)
+-|+|.-|||||+++-.|++ ++..+ |+||.+ ++|+. ..+-. +-+.++.-++++++...+-.
T Consensus 3 IglTG~igsGKStv~~~l~~-~G~~v-idaD~i~~~l~~~--------~~~~~~~l~~~FG~~il~~~g~idR~ 66 (180)
T PF01121_consen 3 IGLTGGIGSGKSTVSKILAE-LGFPV-IDADEIAHELYEP--------GSEGYKALKERFGEEILDEDGEIDRK 66 (180)
T ss_dssp EEEEESTTSSHHHHHHHHHH-TT-EE-EEHHHHHHHCTSC--------TCHHHHHHHHHHGGGGBETTSSB-HH
T ss_pred EEEECCCcCCHHHHHHHHHH-CCCCE-ECccHHHHHHhhc--------CHHHHHHHHHHcCccccCCCCCChHH
Confidence 45899999999999999999 99999 999964 55542 11222 22234555666766554433
No 204
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.35 E-value=0.0016 Score=44.71 Aligned_cols=57 Identities=11% Similarity=-0.009 Sum_probs=34.1
Q ss_pred eeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCceecCCCCHHHhcCCCe---eeecccCCC
Q psy7554 26 LSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPH---HLLDFLDPN 89 (115)
Q Consensus 26 li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpH---HLid~ldp~ 89 (115)
.|.||+|+|||.|+-.||+.+.-.+ -... .-++-+-.|..+-..+..+ +++|-+...
T Consensus 2 ~i~G~~G~GKS~l~~~l~~~l~~~~-~~~~------~~~vy~~~~~~~~w~gY~~q~vvi~DD~~~~ 61 (107)
T PF00910_consen 2 WIYGPPGIGKSTLAKELAKDLLKHI-GEPT------KDSVYTRNPGDKFWDGYQGQPVVIIDDFGQD 61 (107)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHh-ccCC------CCcEEeCCCccchhhccCCCcEEEEeecCcc
Confidence 4699999999999999998775443 1111 1233344455554444444 444544444
No 205
>PRK06893 DNA replication initiation factor; Validated
Probab=96.35 E-value=0.0029 Score=48.83 Aligned_cols=21 Identities=5% Similarity=-0.108 Sum_probs=18.3
Q ss_pred eeeeccCCCchhHHHHHHhcC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~ 45 (115)
+++.||+|+|||.|+..+|..
T Consensus 42 l~l~G~~G~GKThL~~ai~~~ 62 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNH 62 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999854
No 206
>PRK06921 hypothetical protein; Provisional
Probab=96.35 E-value=0.0021 Score=51.30 Aligned_cols=25 Identities=4% Similarity=-0.307 Sum_probs=21.1
Q ss_pred EeeeeeeccCCCchhHHHHHHhcCC
Q psy7554 22 YLSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 22 ~~~~li~GpTasGKS~lai~LA~~~ 46 (115)
..++++.||+|+|||.|+..+|..+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l 141 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANEL 141 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4566779999999999999998764
No 207
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.35 E-value=0.0026 Score=52.32 Aligned_cols=22 Identities=5% Similarity=-0.135 Sum_probs=19.8
Q ss_pred eeeeeccCCCchhHHHHHHhcC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~ 45 (115)
.++|+||||||||++...|+..
T Consensus 150 ~ilI~G~tGSGKTTll~aL~~~ 171 (319)
T PRK13894 150 NILVIGGTGSGKTTLVNAIINE 171 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHh
Confidence 5779999999999999999865
No 208
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.34 E-value=0.0036 Score=46.58 Aligned_cols=23 Identities=9% Similarity=-0.127 Sum_probs=19.8
Q ss_pred ceeEeeeeeeccCCCchhHHHHHHhc
Q psy7554 19 DQVYLSYLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 19 ~~~~~~~li~GpTasGKS~lai~LA~ 44 (115)
.++++ |+||+|||||.|++++|.
T Consensus 12 g~i~~---i~G~~GsGKT~l~~~~~~ 34 (209)
T TIGR02237 12 GTITQ---IYGPPGSGKTNICMILAV 34 (209)
T ss_pred CeEEE---EECCCCCCHHHHHHHHHH
Confidence 55665 999999999999999884
No 209
>PRK08727 hypothetical protein; Validated
Probab=96.34 E-value=0.0026 Score=49.30 Aligned_cols=25 Identities=8% Similarity=-0.124 Sum_probs=19.4
Q ss_pred eEeeeeeeccCCCchhHHHHHHhcC
Q psy7554 21 VYLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 21 ~~~~~li~GpTasGKS~lai~LA~~ 45 (115)
.+..++|.||+|+|||.|+..++.+
T Consensus 40 ~~~~l~l~G~~G~GKThL~~a~~~~ 64 (233)
T PRK08727 40 SSDWLYLSGPAGTGKTHLALALCAA 64 (233)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3445667999999999998887543
No 210
>PRK00698 tmk thymidylate kinase; Validated
Probab=96.34 E-value=0.0018 Score=47.45 Aligned_cols=23 Identities=9% Similarity=-0.208 Sum_probs=20.6
Q ss_pred eeeeccCCCchhHHHHHHhcCCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD 47 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~ 47 (115)
|+|.||.|||||+++-.|++.++
T Consensus 6 I~ieG~~gsGKsT~~~~L~~~l~ 28 (205)
T PRK00698 6 ITIEGIDGAGKSTQIELLKELLE 28 (205)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999998763
No 211
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.34 E-value=0.0027 Score=53.02 Aligned_cols=27 Identities=11% Similarity=-0.029 Sum_probs=23.8
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
++++.||.|+|||.||..+|+..+...
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~~~~~~~ 64 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAGATDAPF 64 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 678899999999999999999877554
No 212
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.33 E-value=0.022 Score=43.84 Aligned_cols=28 Identities=7% Similarity=-0.123 Sum_probs=23.6
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhcCC
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~~~ 46 (115)
=.|.+++. |+||.|||||+|..-||.-.
T Consensus 27 i~~Ge~~~---i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 27 FPENSVTA---IIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred EcCCCEEE---EECCCCCCHHHHHHHHHhcc
Confidence 35777776 99999999999999998754
No 213
>PLN02348 phosphoribulokinase
Probab=96.32 E-value=0.0029 Score=54.14 Aligned_cols=31 Identities=10% Similarity=-0.141 Sum_probs=24.9
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCCCc
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGPDL 48 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~~~ 48 (115)
+++..++ |-|+|+.|||||+||..|++.+++
T Consensus 45 ~~~~p~I-IGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 45 ADDGTVV-IGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred cCCCCEE-EEEECCCCCCHHHHHHHHHHHHhh
Confidence 3444554 679999999999999999998863
No 214
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.31 E-value=0.015 Score=43.25 Aligned_cols=33 Identities=3% Similarity=-0.146 Sum_probs=26.0
Q ss_pred cCCCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 15 TGTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 15 ~~~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
+=.|.+++. |+||.|||||+|..-||.-+ .|+|
T Consensus 23 ~i~~G~~~~---i~G~nGsGKSTLl~~l~G~~~~~~G~i 58 (214)
T cd03292 23 SISAGEFVF---LVGPSGAGKSTLLKLIYKEELPTSGTI 58 (214)
T ss_pred EEcCCCEEE---EECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 345777776 89999999999999998654 3655
No 215
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.30 E-value=0.0025 Score=55.44 Aligned_cols=37 Identities=5% Similarity=-0.162 Sum_probs=30.5
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeeccceeeecc
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYK 61 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYk 61 (115)
++|+.||.|+|||.+|..+|...+..+ +..|.-+++.
T Consensus 261 GILL~GPpGTGKTllAkaiA~e~~~~~-~~l~~~~l~~ 297 (489)
T CHL00195 261 GLLLVGIQGTGKSLTAKAIANDWQLPL-LRLDVGKLFG 297 (489)
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCE-EEEEhHHhcc
Confidence 467899999999999999999999887 7766544443
No 216
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=96.28 E-value=0.0017 Score=47.57 Aligned_cols=24 Identities=8% Similarity=-0.233 Sum_probs=21.7
Q ss_pred eeeeccCCCchhHHHHHHhcCCCc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDL 48 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~ 48 (115)
|+|.|+.|||||+++-.||+.++.
T Consensus 6 IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 6 IVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 678999999999999999998864
No 217
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=96.26 E-value=0.0036 Score=49.90 Aligned_cols=36 Identities=3% Similarity=-0.268 Sum_probs=30.8
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee--eecc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL--MVYK 61 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm--QVYk 61 (115)
+-|+|.-|||||+++--|++.++..+ |+||-. ++|+
T Consensus 4 IGlTGgIgSGKStVs~~L~~~~G~~v-iDaD~iar~l~~ 41 (244)
T PTZ00451 4 IGLTGGIACGKSTVSRILREEHHIEV-IDADLVVRELQA 41 (244)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE-EehHHHHHHHHc
Confidence 56799999999999999999889999 999953 5553
No 218
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.25 E-value=0.0032 Score=53.77 Aligned_cols=31 Identities=6% Similarity=-0.124 Sum_probs=26.3
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeeccc
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQV 55 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaD 55 (115)
++|+.||.|+|||.|+..+|...+..+ +..+
T Consensus 90 giLL~GppGtGKT~la~alA~~~~~~~-~~i~ 120 (495)
T TIGR01241 90 GVLLVGPPGTGKTLLAKAVAGEAGVPF-FSIS 120 (495)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCCCe-eecc
Confidence 567899999999999999999988776 5544
No 219
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.25 E-value=0.0025 Score=55.07 Aligned_cols=31 Identities=6% Similarity=-0.138 Sum_probs=24.9
Q ss_pred eeeeccCCCchhHHHHHHhcCC------CceEeeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP------DLFCRTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~------~~eI~IsaDS 56 (115)
++++||||||||.++..||..+ ..-+ +.+|.
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~~~G~~V~L-it~Dt 262 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSL-YTTDN 262 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCeEEE-ecccc
Confidence 4589999999999999999643 2345 88888
No 220
>PF13173 AAA_14: AAA domain
Probab=96.25 E-value=0.0038 Score=43.65 Aligned_cols=37 Identities=8% Similarity=-0.240 Sum_probs=28.9
Q ss_pred eeeeccCCCchhHHHHHHhcCCC--ce-Eeeccceeeecc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD--LF-CRTYQVYLMVYK 61 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~--~e-I~IsaDSmQVYk 61 (115)
++|.||.+||||.|+.++++.+. .. +.+|.|.....+
T Consensus 5 ~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~ 44 (128)
T PF13173_consen 5 IILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRR 44 (128)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHH
Confidence 34899999999999999998764 22 228888777754
No 221
>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
Probab=96.24 E-value=0.0024 Score=49.50 Aligned_cols=47 Identities=21% Similarity=0.109 Sum_probs=38.8
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCceecCCCCHHHh-cCCCeee
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVITNKVTPEEA-EGIPHHL 82 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~-~~IpHHL 82 (115)
.+||+|+-=||||+.|=+||.+.++.+ +=|.|++|..+|| ++|.||=
T Consensus 2 ~ilvtGgaRSGKS~~AE~la~~~~~~v------------~YvAT~~a~D~Em~~RI~~Hr 49 (175)
T COG2087 2 MILVTGGARSGKSSFAEALAGESGGQV------------LYVATGRAFDDEMQERIAHHR 49 (175)
T ss_pred eEEEecCccCCchHHHHHHHHhhCCce------------EEEEecCCCCHHHHHHHHHHH
Confidence 478999999999999999999987776 4589999996665 4577764
No 222
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=96.23 E-value=0.004 Score=53.90 Aligned_cols=33 Identities=6% Similarity=-0.258 Sum_probs=29.8
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
.++|+|+.|||||+++..||+.++... +.+|..
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~-id~D~~ 34 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQF-IDMDEE 34 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeE-EECcHH
Confidence 367899999999999999999999999 988864
No 223
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.23 E-value=0.0035 Score=50.70 Aligned_cols=30 Identities=3% Similarity=-0.329 Sum_probs=27.1
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQV 55 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaD 55 (115)
|+++|+.|||||.++..||+.++... +..|
T Consensus 136 I~l~G~~GsGKStvg~~La~~Lg~~~-id~D 165 (309)
T PRK08154 136 IALIGLRGAGKSTLGRMLAARLGVPF-VELN 165 (309)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCE-EeHH
Confidence 55799999999999999999999988 7666
No 224
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.23 E-value=0.0033 Score=50.04 Aligned_cols=22 Identities=9% Similarity=-0.081 Sum_probs=18.6
Q ss_pred eeeeccCCCchhHHHHHHhcCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~ 46 (115)
++|+||||||||++...+...+
T Consensus 83 ilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 83 ILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred EEEECCCCCcHHHHHHHHHhhh
Confidence 5599999999999988786655
No 225
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.21 E-value=0.0048 Score=49.49 Aligned_cols=30 Identities=10% Similarity=-0.043 Sum_probs=23.2
Q ss_pred eeeccCCCchhHHHHHHhcCC-----CceEeeccce
Q psy7554 26 LSCLPDSVCPHAHQVDLTDGP-----DLFCRTYQVY 56 (115)
Q Consensus 26 li~GpTasGKS~lai~LA~~~-----~~eI~IsaDS 56 (115)
+++||+|+|||+++.+||..+ ..-+ |.+|.
T Consensus 76 ~l~G~~G~GKTTt~akLA~~l~~~g~~V~l-i~~D~ 110 (272)
T TIGR00064 76 LFVGVNGVGKTTTIAKLANKLKKQGKSVLL-AAGDT 110 (272)
T ss_pred EEECCCCCcHHHHHHHHHHHHHhcCCEEEE-EeCCC
Confidence 367999999999998888543 2345 88885
No 226
>PRK04195 replication factor C large subunit; Provisional
Probab=96.21 E-value=0.0039 Score=53.16 Aligned_cols=29 Identities=14% Similarity=-0.024 Sum_probs=24.8
Q ss_pred EeeeeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 22 YLSYLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 22 ~~~~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
.-.+||.||.|+|||.+|..||+.++..+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~ 67 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEV 67 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 34566899999999999999999998655
No 227
>PLN03025 replication factor C subunit; Provisional
Probab=96.21 E-value=0.0026 Score=51.21 Aligned_cols=24 Identities=8% Similarity=-0.076 Sum_probs=21.1
Q ss_pred eeeeccCCCchhHHHHHHhcCCCc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDL 48 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~ 48 (115)
+++.||.|+|||.+|..+|+.+.+
T Consensus 37 lll~Gp~G~GKTtla~~la~~l~~ 60 (319)
T PLN03025 37 LILSGPPGTGKTTSILALAHELLG 60 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhc
Confidence 567999999999999999988744
No 228
>PRK13764 ATPase; Provisional
Probab=96.20 E-value=0.0025 Score=56.91 Aligned_cols=24 Identities=8% Similarity=-0.101 Sum_probs=20.6
Q ss_pred eeeeeccCCCchhHHHHHHhcCCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPD 47 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~ 47 (115)
.+||+||||||||+++..|+..++
T Consensus 259 ~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 259 GILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 367999999999999999887664
No 229
>PRK05642 DNA replication initiation factor; Validated
Probab=96.19 E-value=0.0033 Score=48.87 Aligned_cols=78 Identities=14% Similarity=-0.103 Sum_probs=41.1
Q ss_pred EeeeeeeccCCCchhHHHHHHhc-----CCCceEeeccceeeeccCCceecCCCC-HHHhcCCCeeeecccCCCCccCHH
Q psy7554 22 YLSYLSCLPDSVCPHAHQVDLTD-----GPDLFCRTYQVYLMVYKGLDVITNKVT-PEEAEGIPHHLLDFLDPNTRFTVV 95 (115)
Q Consensus 22 ~~~~li~GpTasGKS~lai~LA~-----~~~~eI~IsaDSmQVYkgldIgTAKPs-~eE~~~IpHHLid~ldp~e~ySv~ 95 (115)
+..++|.||+|+|||.|+..++. +..... ++++.+.-+ . +. .+..+.++.-++|-++....- .
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y-~~~~~~~~~--~------~~~~~~~~~~d~LiiDDi~~~~~~--~ 113 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVY-LPLAELLDR--G------PELLDNLEQYELVCLDDLDVIAGK--A 113 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEE-eeHHHHHhh--h------HHHHHhhhhCCEEEEechhhhcCC--h
Confidence 34556799999999999888763 223333 666543211 0 11 122334555566666533211 2
Q ss_pred HHHHHHHHHHhhhhh
Q psy7554 96 DYRNRALKHTGLKVD 110 (115)
Q Consensus 96 ~F~~~A~~~I~~i~~ 110 (115)
+|.++...+++...+
T Consensus 114 ~~~~~Lf~l~n~~~~ 128 (234)
T PRK05642 114 DWEEALFHLFNRLRD 128 (234)
T ss_pred HHHHHHHHHHHHHHh
Confidence 444445555554433
No 230
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.18 E-value=0.0037 Score=46.87 Aligned_cols=22 Identities=5% Similarity=-0.209 Sum_probs=19.4
Q ss_pred eeeeccCCCchhHHHHHHhcCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~ 46 (115)
+.|+|+.|||||+|+..|++.+
T Consensus 27 i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 27 LWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 3469999999999999999876
No 231
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.18 E-value=0.0037 Score=48.48 Aligned_cols=23 Identities=0% Similarity=-0.291 Sum_probs=19.5
Q ss_pred eeeeeccCCCchhHHHHHHhcCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~ 46 (115)
+++|+||+|+|||.|+..+|...
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~ 69 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAEL 69 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999998888653
No 232
>PF12846 AAA_10: AAA-like domain
Probab=96.17 E-value=0.0043 Score=47.06 Aligned_cols=37 Identities=8% Similarity=-0.226 Sum_probs=24.8
Q ss_pred eeeeccCCCchhHHHHHHhcC---CCceEeeccceeeeccC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDG---PDLFCRTYQVYLMVYKG 62 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~---~~~eI~IsaDSmQVYkg 62 (115)
++|+|+||||||.++..+.+. .+..+ +..|--.=|..
T Consensus 4 ~~i~G~tGsGKT~~~~~l~~~~~~~g~~~-~i~D~~g~~~~ 43 (304)
T PF12846_consen 4 TLILGKTGSGKTTLLKNLLEQLIRRGPRV-VIFDPKGDYSP 43 (304)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCCE-EEEcCCchHHH
Confidence 578999999999998877753 34444 44465444433
No 233
>PRK06761 hypothetical protein; Provisional
Probab=96.16 E-value=0.0039 Score=50.88 Aligned_cols=31 Identities=6% Similarity=-0.292 Sum_probs=25.5
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
++|+||.|||||+++..|++.++..- ++++.
T Consensus 6 IvI~G~~GsGKTTla~~L~~~L~~~g-~~v~~ 36 (282)
T PRK06761 6 IIIEGLPGFGKSTTAKMLNDILSQNG-IEVEL 36 (282)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCcCc-eEEEE
Confidence 56899999999999999999987644 44444
No 234
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.16 E-value=0.0031 Score=46.38 Aligned_cols=32 Identities=3% Similarity=-0.287 Sum_probs=23.9
Q ss_pred eeeccCCCchhHHHHHHhcCCC--c--eEeecccee
Q psy7554 26 LSCLPDSVCPHAHQVDLTDGPD--L--FCRTYQVYL 57 (115)
Q Consensus 26 li~GpTasGKS~lai~LA~~~~--~--eI~IsaDSm 57 (115)
+|+|+.|||||+++..|++.+. + .+.++.|.+
T Consensus 22 ~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~ 57 (184)
T TIGR00455 22 WLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNV 57 (184)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHH
Confidence 4899999999999999998762 1 222666654
No 235
>PRK10867 signal recognition particle protein; Provisional
Probab=96.16 E-value=0.0048 Score=53.05 Aligned_cols=31 Identities=3% Similarity=-0.140 Sum_probs=24.2
Q ss_pred eeeeccCCCchhHHHHHHhcC------CCceEeeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDG------PDLFCRTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~------~~~eI~IsaDS 56 (115)
++++||+|||||+++.+||.. ...-+ |++|.
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~G~kV~l-V~~D~ 139 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLL-VAADV 139 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCcEEE-EEccc
Confidence 458999999999988888853 23456 99995
No 236
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.16 E-value=0.0024 Score=52.81 Aligned_cols=23 Identities=4% Similarity=-0.211 Sum_probs=19.7
Q ss_pred eeeeeccCCCchhHHHHHHhcCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~ 46 (115)
++++.||||+|||.||..+|..+
T Consensus 185 ~Lll~G~~GtGKThLa~aIa~~l 207 (329)
T PRK06835 185 NLLFYGNTGTGKTFLSNCIAKEL 207 (329)
T ss_pred cEEEECCCCCcHHHHHHHHHHHH
Confidence 45669999999999999998764
No 237
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.16 E-value=0.003 Score=51.90 Aligned_cols=36 Identities=3% Similarity=-0.205 Sum_probs=28.7
Q ss_pred eeeeccCCCchhHHHHHHhcCCC-----ceEeeccceeeecc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD-----LFCRTYQVYLMVYK 61 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~-----~eI~IsaDSmQVYk 61 (115)
+.|+|++|||||.++..|++.+. ..+ |+.|+.=-|.
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~~~g~~v~v-I~~D~yyr~~ 42 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFAREGIHPAV-VEGDSFHRYE 42 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCceEE-EeccccccCC
Confidence 45899999999999999997553 456 9999975543
No 238
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.15 E-value=0.0036 Score=44.61 Aligned_cols=24 Identities=13% Similarity=-0.114 Sum_probs=16.7
Q ss_pred eeeeeeccCCCchhHHHHHHhcCC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~ 46 (115)
-+++|.|+.|+|||.|..++.+.+
T Consensus 25 ~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 25 RNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --EEE-B-TTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999988877655
No 239
>PF05729 NACHT: NACHT domain
Probab=96.15 E-value=0.0027 Score=44.09 Aligned_cols=22 Identities=5% Similarity=-0.203 Sum_probs=18.9
Q ss_pred eeeeccCCCchhHHHHHHhcCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~ 46 (115)
++|.|+.|+|||.++..++..+
T Consensus 3 l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 4689999999999998888654
No 240
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.14 E-value=0.0031 Score=52.60 Aligned_cols=27 Identities=7% Similarity=-0.060 Sum_probs=23.4
Q ss_pred eeeeeeccCCCchhHHHHHHhcCCCce
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGPDLF 49 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~~~e 49 (115)
-++|+.||.|+|||++|..+|+.++++
T Consensus 39 ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 39 HGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred eeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 346699999999999999999988764
No 241
>PRK08181 transposase; Validated
Probab=96.13 E-value=0.004 Score=50.18 Aligned_cols=20 Identities=10% Similarity=-0.122 Sum_probs=17.8
Q ss_pred eeeeccCCCchhHHHHHHhc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~ 44 (115)
++++||+|+|||.||..+|.
T Consensus 109 lll~Gp~GtGKTHLa~Aia~ 128 (269)
T PRK08181 109 LLLFGPPGGGKSHLAAAIGL 128 (269)
T ss_pred EEEEecCCCcHHHHHHHHHH
Confidence 56799999999999999885
No 242
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.13 E-value=0.0077 Score=49.48 Aligned_cols=36 Identities=11% Similarity=-0.070 Sum_probs=26.6
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHhcCC---C--ceEeecccee
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLTDGP---D--LFCRTYQVYL 57 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA~~~---~--~eI~IsaDSm 57 (115)
+.+|+. ++||+|||||+++..||..+ + ..+ +.+|..
T Consensus 113 ~~~vi~---lvGpnGsGKTTt~~kLA~~l~~~g~~V~L-i~~D~~ 153 (318)
T PRK10416 113 KPFVIL---VVGVNGVGKTTTIGKLAHKYKAQGKKVLL-AAGDTF 153 (318)
T ss_pred CCeEEE---EECCCCCcHHHHHHHHHHHHHhcCCeEEE-EecCcc
Confidence 345555 89999999999999988543 3 334 888874
No 243
>PRK09183 transposase/IS protein; Provisional
Probab=96.13 E-value=0.0041 Score=49.29 Aligned_cols=20 Identities=15% Similarity=0.037 Sum_probs=17.4
Q ss_pred eeeeccCCCchhHHHHHHhc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~ 44 (115)
++|.||+|+|||.|+..|+.
T Consensus 105 v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 105 IVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 45799999999999998864
No 244
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.12 E-value=0.006 Score=42.11 Aligned_cols=27 Identities=11% Similarity=0.037 Sum_probs=22.6
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHhcCCC
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLTDGPD 47 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA~~~~ 47 (115)
+.+++. |+||.|||||+|...|+....
T Consensus 10 ~g~~~~---i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 10 PGEIVA---IVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TTSEEE---EEESTTSSHHHHHHHHTTSSH
T ss_pred CCCEEE---EEccCCCccccceeeeccccc
Confidence 556666 999999999999999987763
No 245
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=96.11 E-value=0.0038 Score=45.90 Aligned_cols=26 Identities=4% Similarity=-0.189 Sum_probs=22.4
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
|.|.|+.|||||+++-.|++.++..+
T Consensus 2 I~ieG~~GsGKSTl~~~L~~~~~~~~ 27 (193)
T cd01673 2 IVVEGNIGAGKSTLAKELAEHLGYEV 27 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcc
Confidence 57899999999999999998876544
No 246
>KOG0741|consensus
Probab=96.10 E-value=0.0046 Score=55.81 Aligned_cols=37 Identities=14% Similarity=-0.008 Sum_probs=30.8
Q ss_pred EeeeeeeccCCCchhHHHHHHhcCCCc---eEeeccceeee
Q psy7554 22 YLSYLSCLPDSVCPHAHQVDLTDGPDL---FCRTYQVYLMV 59 (115)
Q Consensus 22 ~~~~li~GpTasGKS~lai~LA~~~~~---eI~IsaDSmQV 59 (115)
..|+|+.||.|||||+||.++|+.-+- -| ||++.|-=
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKi-iSpe~miG 577 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSSDFPFVKI-ISPEDMIG 577 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhcCCCeEEE-eChHHccC
Confidence 468899999999999999999988664 35 88887743
No 247
>KOG1942|consensus
Probab=96.08 E-value=0.0037 Score=53.33 Aligned_cols=25 Identities=12% Similarity=0.057 Sum_probs=22.2
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCc
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDL 48 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~ 48 (115)
.+|++||.|+|||+||+.++++++.
T Consensus 66 avLlaGppgtGKTAlAlaisqELG~ 90 (456)
T KOG1942|consen 66 AVLLAGPPGTGKTALALAISQELGP 90 (456)
T ss_pred EEEEecCCCCchhHHHHHHHHHhCC
Confidence 3567999999999999999999864
No 248
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.08 E-value=0.0043 Score=48.96 Aligned_cols=36 Identities=6% Similarity=-0.187 Sum_probs=26.4
Q ss_pred eEeeeeeeccCCCchhHHHHHHhcCCCceE-eeccce
Q psy7554 21 VYLSYLSCLPDSVCPHAHQVDLTDGPDLFC-RTYQVY 56 (115)
Q Consensus 21 ~~~~~li~GpTasGKS~lai~LA~~~~~eI-~IsaDS 56 (115)
....+++.||.|+|||.++..+|+.++..+ .+|+..
T Consensus 42 ~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~ 78 (316)
T PHA02544 42 IPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD 78 (316)
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc
Confidence 334455799999999999999999876543 255543
No 249
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.06 E-value=0.031 Score=41.56 Aligned_cols=33 Identities=9% Similarity=-0.188 Sum_probs=26.5
Q ss_pred cCCCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 15 TGTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 15 ~~~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
+=.|.+++. |+||.|||||+|..-||--. .|+|
T Consensus 22 ~i~~G~~~~---l~G~nGsGKSTLl~~l~G~~~~~~G~i 57 (213)
T cd03262 22 TVKKGEVVV---IIGPSGSGKSTLLRCINLLEEPDSGTI 57 (213)
T ss_pred EECCCCEEE---EECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 345778877 89999999999999998543 4666
No 250
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.05 E-value=0.0046 Score=52.33 Aligned_cols=25 Identities=8% Similarity=-0.234 Sum_probs=22.7
Q ss_pred eeeeccCCCchhHHHHHHhcCCCce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLF 49 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~e 49 (115)
|+|+|++|||||+|+-.||+.+|..
T Consensus 222 IvI~G~~gsGKTTL~~~La~~~g~~ 246 (399)
T PRK08099 222 VAILGGESSGKSTLVNKLANIFNTT 246 (399)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 6789999999999999999998764
No 251
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.05 E-value=0.0039 Score=48.14 Aligned_cols=92 Identities=7% Similarity=0.037 Sum_probs=54.9
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcC-----CCceEeeccceeeeccCCce-ecCCCC---HHHhcCCCeeeecccC
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDG-----PDLFCRTYQVYLMVYKGLDV-ITNKVT---PEEAEGIPHHLLDFLD 87 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~-----~~~eI~IsaDSmQVYkgldI-gTAKPs---~eE~~~IpHHLid~ld 87 (115)
.|++.|..++|.||+|+|||.|...++.+ .+..+ +..++-++.+.+.= .-+... .++.+.++--++|-++
T Consensus 29 ~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v-~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~ 107 (219)
T PF00308_consen 29 NPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRV-VYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQ 107 (219)
T ss_dssp STTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-E-EEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGG
T ss_pred cCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccc-eeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecch
Confidence 36777777888999999999998777643 34456 56665555544311 111111 1344666667777665
Q ss_pred CCCccCHHHHHHHHHHHHhhhhhc
Q psy7554 88 PNTRFTVVDYRNRALKHTGLKVDL 111 (115)
Q Consensus 88 p~e~ySv~~F~~~A~~~I~~i~~~ 111 (115)
.-. .-..|++.....++...++
T Consensus 108 ~l~--~~~~~q~~lf~l~n~~~~~ 129 (219)
T PF00308_consen 108 FLA--GKQRTQEELFHLFNRLIES 129 (219)
T ss_dssp GGT--THHHHHHHHHHHHHHHHHT
T ss_pred hhc--CchHHHHHHHHHHHHHHhh
Confidence 432 2345666666666665544
No 252
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=96.04 E-value=0.035 Score=42.57 Aligned_cols=27 Identities=15% Similarity=-0.020 Sum_probs=22.9
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~ 46 (115)
.+.+++. |+||.|||||+|..-|+.-.
T Consensus 25 ~~Ge~~~---i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 25 PKNQVTA---LIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred CCCCEEE---EECCCCCCHHHHHHHHhccC
Confidence 5777777 89999999999999998543
No 253
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.03 E-value=0.029 Score=42.74 Aligned_cols=33 Identities=6% Similarity=-0.199 Sum_probs=26.2
Q ss_pred cCCCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 15 TGTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 15 ~~~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
+=.|.+++. |+||.|||||+|..-|+.-. .|+|
T Consensus 23 ~i~~Ge~~~---l~G~nGsGKSTLl~~l~G~~~~~~G~i 58 (240)
T PRK09493 23 NIDQGEVVV---IIGPSGSGKSTLLRCINKLEEITSGDL 58 (240)
T ss_pred EEcCCcEEE---EECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 335778877 89999999999999998553 4666
No 254
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.03 E-value=0.0044 Score=56.35 Aligned_cols=24 Identities=21% Similarity=0.025 Sum_probs=21.2
Q ss_pred eeeeeccCCCchhHHHHHHhcCCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPD 47 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~ 47 (115)
++|++||||+|||.||..||+.+-
T Consensus 541 ~~lf~Gp~GvGKt~lA~~LA~~l~ 564 (821)
T CHL00095 541 SFLFSGPTGVGKTELTKALASYFF 564 (821)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Confidence 455899999999999999999873
No 255
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.03 E-value=0.0085 Score=51.59 Aligned_cols=39 Identities=8% Similarity=-0.162 Sum_probs=29.1
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC-----CceEeeccceeee
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP-----DLFCRTYQVYLMV 59 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~-----~~eI~IsaDSmQV 59 (115)
.+..++. ++||||||||+++..||..+ ..-+ |++|..+.
T Consensus 204 ~~~~ii~---lvGptGvGKTTt~akLA~~l~~~g~~V~l-ItaDtyR~ 247 (407)
T PRK12726 204 SNHRIIS---LIGQTGVGKTTTLVKLGWQLLKQNRTVGF-ITTDTFRS 247 (407)
T ss_pred cCCeEEE---EECCCCCCHHHHHHHHHHHHHHcCCeEEE-EeCCccCc
Confidence 3455544 89999999999999998533 3446 99997654
No 256
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.02 E-value=0.0063 Score=39.63 Aligned_cols=16 Identities=13% Similarity=-0.080 Sum_probs=13.7
Q ss_pred eeeeccCCCchhHHHH
Q psy7554 25 YLSCLPDSVCPHAHQV 40 (115)
Q Consensus 25 ~li~GpTasGKS~lai 40 (115)
.+|+||+|||||+|--
T Consensus 26 tli~G~nGsGKSTllD 41 (62)
T PF13555_consen 26 TLITGPNGSGKSTLLD 41 (62)
T ss_pred EEEECCCCCCHHHHHH
Confidence 5689999999999843
No 257
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.02 E-value=0.032 Score=41.92 Aligned_cols=28 Identities=11% Similarity=-0.029 Sum_probs=23.7
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhcCC
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~~~ 46 (115)
=.|++++. |+||.|||||+|..-|+.-.
T Consensus 30 i~~Ge~~~---i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 30 VKPGEMVL---VLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred ECCCcEEE---EECCCCCCHHHHHHHhcccC
Confidence 35778877 99999999999999998654
No 258
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.01 E-value=0.0057 Score=46.27 Aligned_cols=81 Identities=7% Similarity=-0.019 Sum_probs=43.6
Q ss_pred eeeeccCCCchhHHHHHHhc------CCCceEeecc--ceeeeccCCceecCCCCHHHh-cCCCeeeecccCCCC---cc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTD------GPDLFCRTYQ--VYLMVYKGLDVITNKVTPEEA-EGIPHHLLDFLDPNT---RF 92 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~------~~~~eI~Isa--DSmQVYkgldIgTAKPs~eE~-~~IpHHLid~ldp~e---~y 92 (115)
++|.||+|||||.|+.+++. +.++.. ++. ..-++.+.|. +--...++. ..-.-+++|..+... +.
T Consensus 22 ~li~G~~GsGKT~l~~q~l~~~~~~~ge~vly-vs~ee~~~~l~~~~~--s~g~d~~~~~~~g~l~~~d~~~~~~~~~~~ 98 (226)
T PF06745_consen 22 VLISGPPGSGKTTLALQFLYNGLKNFGEKVLY-VSFEEPPEELIENMK--SFGWDLEEYEDSGKLKIIDAFPERIGWSPN 98 (226)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHHT--EEE-EESSS-HHHHHHHHH--TTTS-HHHHHHTTSEEEEESSGGGST-TSC
T ss_pred EEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEE-EEecCCHHHHHHHHH--HcCCcHHHHhhcCCEEEEeccccccccccc
Confidence 44999999999999998763 233434 554 3334444433 111122221 111234555555443 56
Q ss_pred CHHHHHHHHHHHHhhh
Q psy7554 93 TVVDYRNRALKHTGLK 108 (115)
Q Consensus 93 Sv~~F~~~A~~~I~~i 108 (115)
+...+.....+.+++.
T Consensus 99 ~~~~l~~~i~~~i~~~ 114 (226)
T PF06745_consen 99 DLEELLSKIREAIEEL 114 (226)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhc
Confidence 7777777766666653
No 259
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.01 E-value=0.0053 Score=52.80 Aligned_cols=27 Identities=4% Similarity=-0.066 Sum_probs=23.5
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
.+|+.||+|+|||.+|..+|..++...
T Consensus 219 gVLL~GPPGTGKT~LAraIA~el~~~f 245 (438)
T PTZ00361 219 GVILYGPPGTGKTLLAKAVANETSATF 245 (438)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCCE
Confidence 356799999999999999999988755
No 260
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.00 E-value=0.0042 Score=57.09 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=23.1
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhcCC
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~~~ 46 (115)
++|-.+|+ ++||||||||.||..||+.+
T Consensus 593 ~~p~~~~l---f~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 593 RKPLGVFL---LVGPSGVGKTETALALAELL 620 (852)
T ss_pred CCCceEEE---EECCCCCCHHHHHHHHHHHH
Confidence 34555444 99999999999999999887
No 261
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.00 E-value=0.027 Score=41.30 Aligned_cols=34 Identities=3% Similarity=-0.234 Sum_probs=26.5
Q ss_pred cCCCceeEeeeeeeccCCCchhHHHHHHhcC---CCceEe
Q psy7554 15 TGTPDQVYLSYLSCLPDSVCPHAHQVDLTDG---PDLFCR 51 (115)
Q Consensus 15 ~~~~~~~~~~~li~GpTasGKS~lai~LA~~---~~~eI~ 51 (115)
+=.+.+++. |+||.|+|||+|..-|+.- ..|+|.
T Consensus 22 ~i~~G~~~~---i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 58 (178)
T cd03229 22 NIEAGEIVA---LLGPSGSGKSTLLRCIAGLEEPDSGSIL 58 (178)
T ss_pred EEcCCCEEE---EECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 445777777 8999999999999999854 356663
No 262
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.98 E-value=0.007 Score=45.43 Aligned_cols=24 Identities=13% Similarity=0.012 Sum_probs=20.1
Q ss_pred ceeEeeeeeeccCCCchhHHHHHHhcC
Q psy7554 19 DQVYLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 19 ~~~~~~~li~GpTasGKS~lai~LA~~ 45 (115)
..+++ |+||.|||||.|++.+|..
T Consensus 19 g~i~~---i~G~~GsGKT~l~~~~a~~ 42 (218)
T cd01394 19 GTVTQ---VYGPPGTGKTNIAIQLAVE 42 (218)
T ss_pred CeEEE---EECCCCCCHHHHHHHHHHH
Confidence 45555 9999999999999999854
No 263
>PLN02422 dephospho-CoA kinase
Probab=95.97 E-value=0.0067 Score=48.17 Aligned_cols=35 Identities=6% Similarity=-0.269 Sum_probs=29.9
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee--eecc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL--MVYK 61 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm--QVYk 61 (115)
+.|+|+-|||||.++-.|+ +++..+ |++|.+ ++|+
T Consensus 4 igltG~igsGKstv~~~l~-~~g~~~-idaD~~~~~l~~ 40 (232)
T PLN02422 4 VGLTGGIASGKSTVSNLFK-SSGIPV-VDADKVARDVLK 40 (232)
T ss_pred EEEECCCCCCHHHHHHHHH-HCCCeE-EehhHHHHHHHH
Confidence 5679999999999999999 579999 999965 5554
No 264
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.96 E-value=0.0063 Score=55.66 Aligned_cols=27 Identities=19% Similarity=0.079 Sum_probs=23.0
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~ 46 (115)
+|..+|+ ++||||+|||.+|..||+.+
T Consensus 593 ~p~~~~L---f~Gp~GvGKt~lA~~La~~l 619 (852)
T TIGR03346 593 RPIGSFL---FLGPTGVGKTELAKALAEFL 619 (852)
T ss_pred CCCeEEE---EEcCCCCCHHHHHHHHHHHh
Confidence 4566565 89999999999999999876
No 265
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.94 E-value=0.0045 Score=47.51 Aligned_cols=23 Identities=9% Similarity=-0.239 Sum_probs=19.6
Q ss_pred eeeeccCCCchhHHHHHHhcCCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD 47 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~ 47 (115)
+.|+||+|||||+|+..|+..+.
T Consensus 36 igi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 36 VGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 34899999999999999997763
No 266
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.93 E-value=0.011 Score=45.26 Aligned_cols=27 Identities=4% Similarity=-0.166 Sum_probs=22.6
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~ 46 (115)
.+.+++. |+||+|||||+|..-||...
T Consensus 27 ~~Ge~~~---i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 27 PDNTITA---LMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred cCCCEEE---EECCCCCCHHHHHHHHhccC
Confidence 4667766 89999999999999998653
No 267
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=95.93 E-value=0.0073 Score=40.15 Aligned_cols=23 Identities=9% Similarity=-0.109 Sum_probs=19.8
Q ss_pred eeeeeccCCCchhHHHHHHhcCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~ 46 (115)
.++++|++|||||+|...+....
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999888654
No 268
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.93 E-value=0.0056 Score=53.59 Aligned_cols=27 Identities=15% Similarity=0.015 Sum_probs=23.9
Q ss_pred eeeeeeccCCCchhHHHHHHhcCCCce
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGPDLF 49 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~~~e 49 (115)
-++|++||.|+|||.+|..+|+.++++
T Consensus 41 ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 41 HAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 346799999999999999999999864
No 269
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.91 E-value=0.005 Score=53.17 Aligned_cols=28 Identities=11% Similarity=0.069 Sum_probs=23.9
Q ss_pred eEeeeeeeccCCCchhHHHHHHhcCCCc
Q psy7554 21 VYLSYLSCLPDSVCPHAHQVDLTDGPDL 48 (115)
Q Consensus 21 ~~~~~li~GpTasGKS~lai~LA~~~~~ 48 (115)
+--++|++||.|+|||.+|..+|+.++.
T Consensus 35 l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 35 ISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3345679999999999999999998875
No 270
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=95.91 E-value=0.0073 Score=46.00 Aligned_cols=23 Identities=9% Similarity=-0.112 Sum_probs=19.5
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
|.+|++|+||||||++.--|..+
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~ 23 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGK 23 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 46889999999999998887643
No 271
>PRK08116 hypothetical protein; Validated
Probab=95.91 E-value=0.0041 Score=49.59 Aligned_cols=23 Identities=4% Similarity=-0.185 Sum_probs=19.9
Q ss_pred eeeeeccCCCchhHHHHHHhcCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~ 46 (115)
++++.|++|+|||.||..+|..+
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l 138 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANEL 138 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46679999999999999998764
No 272
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.90 E-value=0.0083 Score=48.13 Aligned_cols=56 Identities=14% Similarity=0.075 Sum_probs=33.9
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCceecCCCCHHHhcCC-CeeeecccCCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVITNKVTPEEAEGI-PHHLLDFLDPN 89 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~~~I-pHHLid~ldp~ 89 (115)
.++|+|++|||||.|...|-..+. ..|+.+=+.|..+..+--+-| |.|+.+..+.+
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~----------~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e 71 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLR----------HKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKE 71 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhc----------ccCCEEEEEecCCchhhhhhcchhhccccccHH
Confidence 467899999999999888864432 234444455555544433443 35555554433
No 273
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.89 E-value=0.0075 Score=45.18 Aligned_cols=33 Identities=3% Similarity=-0.244 Sum_probs=26.6
Q ss_pred cCCCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 15 TGTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 15 ~~~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
+=.|.+++. |+||.|||||+|..-|+.-. .|+|
T Consensus 22 ~i~~Ge~~~---i~G~nGsGKSTLl~~l~Gl~~~~~G~i 57 (222)
T cd03224 22 TVPEGEIVA---LLGRNGAGKTTLLKTIMGLLPPRSGSI 57 (222)
T ss_pred EEcCCeEEE---EECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 446888888 99999999999998888543 4655
No 274
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.88 E-value=0.004 Score=49.47 Aligned_cols=75 Identities=5% Similarity=-0.087 Sum_probs=40.6
Q ss_pred eeeeeccCCCchhHHHHHHhcCC---CceEeeccceeeeccCCce----ecCCCCHHH-hcCCCeeeecccCC--CCccC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGP---DLFCRTYQVYLMVYKGLDV----ITNKVTPEE-AEGIPHHLLDFLDP--NTRFT 93 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~---~~eI~IsaDSmQVYkgldI----gTAKPs~eE-~~~IpHHLid~ldp--~e~yS 93 (115)
++++.||+|+|||-||..+|.++ +-.+ +....-.+-+.|.- ++-...... +..++=-.||-+-- ...|.
T Consensus 107 nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv-~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 107 NLVLLGPPGVGKTHLAIAIGNELLKAGISV-LFITAPDLLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHcCCeE-EEEEHHHHHHHHHHHHhcCchHHHHHHHhhcCCEEEEecccCccCCHHH
Confidence 56679999999999988887654 2222 22211111111111 222222233 66777777777643 45555
Q ss_pred HHHHHH
Q psy7554 94 VVDYRN 99 (115)
Q Consensus 94 v~~F~~ 99 (115)
...|.+
T Consensus 186 ~~~~~q 191 (254)
T COG1484 186 ADLLFQ 191 (254)
T ss_pred HHHHHH
Confidence 555554
No 275
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.88 E-value=0.0056 Score=56.22 Aligned_cols=23 Identities=22% Similarity=0.060 Sum_probs=20.3
Q ss_pred eeeeeccCCCchhHHHHHHhcCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~ 46 (115)
+++++||||||||.+|..||+.+
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 44599999999999999999865
No 276
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=95.88 E-value=0.013 Score=45.53 Aligned_cols=27 Identities=7% Similarity=-0.114 Sum_probs=23.4
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~ 46 (115)
.+.+++. |+||.|||||+|..-|+...
T Consensus 28 ~~Ge~~~---i~G~nGsGKSTLl~~i~G~~ 54 (262)
T PRK09984 28 HHGEMVA---LLGPSGSGKSTLLRHLSGLI 54 (262)
T ss_pred cCCcEEE---EECCCCCCHHHHHHHHhccC
Confidence 5777777 99999999999999998665
No 277
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.87 E-value=0.0043 Score=48.24 Aligned_cols=26 Identities=15% Similarity=-0.012 Sum_probs=22.8
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCce
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLF 49 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~e 49 (115)
.+|+.||.|+|||++|..||+.+.++
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~ 51 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCE 51 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCC
Confidence 46689999999999999999988653
No 278
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.86 E-value=0.0059 Score=48.97 Aligned_cols=23 Identities=0% Similarity=-0.242 Sum_probs=19.1
Q ss_pred eeeeeccCCCchhHHHHHHhcCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~ 46 (115)
.+++.||+|+|||.+|..+|+.+
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999997777644
No 279
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=95.86 E-value=0.0068 Score=42.57 Aligned_cols=16 Identities=13% Similarity=0.075 Sum_probs=13.3
Q ss_pred eeeeccCCCchhHHHH
Q psy7554 25 YLSCLPDSVCPHAHQV 40 (115)
Q Consensus 25 ~li~GpTasGKS~lai 40 (115)
++|.||||+|||..+.
T Consensus 17 ~li~aptGsGKT~~~~ 32 (169)
T PF00270_consen 17 VLISAPTGSGKTLAYI 32 (169)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCccHHHHH
Confidence 4579999999997755
No 280
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.86 E-value=0.0073 Score=54.21 Aligned_cols=24 Identities=17% Similarity=-0.175 Sum_probs=21.3
Q ss_pred eeeeeeccCCCchhHHHHHHhcCC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~ 46 (115)
.++++.||+|+|||+++-.||+++
T Consensus 204 ~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 467789999999999999999876
No 281
>PLN02459 probable adenylate kinase
Probab=95.85 E-value=0.007 Score=49.07 Aligned_cols=40 Identities=10% Similarity=-0.127 Sum_probs=30.6
Q ss_pred eeccCCCceeEeeeeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 12 NLLTGTPDQVYLSYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 12 ~~~~~~~~~~~~~~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
.+..|+|-. ++|+||.|||||++|-.||+.++..- |++..
T Consensus 23 ~~~~~~~~~----ii~~G~PGsGK~T~a~~la~~~~~~~-is~gd 62 (261)
T PLN02459 23 SLAKGRNVN----WVFLGCPGVGKGTYASRLSKLLGVPH-IATGD 62 (261)
T ss_pred CccccCccE----EEEECCCCCCHHHHHHHHHHHhCCcE-EeCcH
Confidence 345555532 56699999999999999999998776 66543
No 282
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.84 E-value=0.013 Score=48.00 Aligned_cols=27 Identities=11% Similarity=0.000 Sum_probs=22.4
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~ 46 (115)
.|.+++. |+||+|||||+|..-|+...
T Consensus 106 ~~Ge~v~---IvG~~GsGKSTLl~~L~g~~ 132 (329)
T PRK14257 106 KRNKVTA---FIGPSGCGKSTFLRNLNQLN 132 (329)
T ss_pred cCCCEEE---EECCCCCCHHHHHHHHhccc
Confidence 4566666 89999999999999998654
No 283
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.84 E-value=0.0054 Score=53.38 Aligned_cols=26 Identities=15% Similarity=-0.045 Sum_probs=23.1
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCce
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLF 49 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~e 49 (115)
++|++||.|+|||.+|..+|+.++++
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 40 AYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 45599999999999999999999864
No 284
>PLN02842 nucleotide kinase
Probab=95.83 E-value=0.0045 Score=54.43 Aligned_cols=30 Identities=3% Similarity=-0.236 Sum_probs=26.9
Q ss_pred eeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 26 LSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 26 li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
+|.||.|||||++|..||++++... |+++.
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~h-Is~gd 30 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVH-ISTGD 30 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCE-EEccH
Confidence 5899999999999999999999888 77654
No 285
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.83 E-value=0.0089 Score=45.03 Aligned_cols=23 Identities=4% Similarity=-0.253 Sum_probs=20.2
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHh
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLT 43 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA 43 (115)
+.+++. |+||.|||||.|+..+|
T Consensus 18 ~g~i~~---i~G~~GsGKT~l~~~l~ 40 (235)
T cd01123 18 TGSITE---IFGEFGSGKTQLCHQLA 40 (235)
T ss_pred CCeEEE---EECCCCCCHHHHHHHHH
Confidence 466776 99999999999999997
No 286
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=95.83 E-value=0.0065 Score=56.31 Aligned_cols=38 Identities=11% Similarity=-0.032 Sum_probs=31.6
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCc
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLD 64 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgld 64 (115)
-+.|.||.|||||++|-.||++++... |+.+. +||.+.
T Consensus 36 ~i~idG~~gsGKst~~~~la~~l~~~~-~~~g~--~yRa~a 73 (863)
T PRK12269 36 IIALDGPAGSGKSSVCRLLASRLGAQC-LNTGS--FYRAFT 73 (863)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE-EeHHH--HHHHHH
Confidence 478999999999999999999999877 55554 577663
No 287
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=95.82 E-value=0.0078 Score=41.37 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=19.2
Q ss_pred eeeeeccCCCchhHHHHHHhcC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~ 45 (115)
-++++|+.+||||+|..++..+
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3678999999999999999854
No 288
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.82 E-value=0.046 Score=42.00 Aligned_cols=27 Identities=7% Similarity=-0.129 Sum_probs=23.0
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhcC
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~~ 45 (115)
=.+.+++. |+||.|||||+|..-||--
T Consensus 27 i~~Ge~~~---i~G~nGsGKSTLl~~l~G~ 53 (251)
T PRK14270 27 IYENKITA---LIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred EcCCCEEE---EECCCCCCHHHHHHHHHhc
Confidence 35778877 8999999999999999854
No 289
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.82 E-value=0.0068 Score=48.34 Aligned_cols=28 Identities=4% Similarity=-0.184 Sum_probs=24.3
Q ss_pred eeeeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
..|+|.||=|+|||+||-.||++++...
T Consensus 5 ~~IvI~G~IG~GKSTLa~~La~~l~~~~ 32 (216)
T COG1428 5 MVIVIEGMIGAGKSTLAQALAEHLGFKV 32 (216)
T ss_pred cEEEEecccccCHHHHHHHHHHHhCCce
Confidence 3578899999999999999999998643
No 290
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.82 E-value=0.0063 Score=51.80 Aligned_cols=32 Identities=9% Similarity=-0.114 Sum_probs=24.1
Q ss_pred eeeeccCCCchhHHHHHHhcCC-------CceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP-------DLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~-------~~eI~IsaDSm 57 (115)
++++||||||||.++..||..+ ...+ |.+|..
T Consensus 224 i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~l-i~~D~~ 262 (424)
T PRK05703 224 VALVGPTGVGKTTTLAKLAARYALLYGKKKVAL-ITLDTY 262 (424)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEE-EECCcc
Confidence 4489999999999888776432 3456 899984
No 291
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=95.82 E-value=0.0082 Score=41.80 Aligned_cols=22 Identities=9% Similarity=-0.019 Sum_probs=19.3
Q ss_pred eeeeeccCCCchhHHHHHHhcC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~ 45 (115)
-++++|+++||||+|...|...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKN 24 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4678999999999999998865
No 292
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=95.81 E-value=0.0067 Score=55.49 Aligned_cols=24 Identities=8% Similarity=0.203 Sum_probs=19.5
Q ss_pred CCceeEeeeeeeccCCCchhHH--HHHHh
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAH--QVDLT 43 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~l--ai~LA 43 (115)
..+.|++ |+||||||||++ |+.+|
T Consensus 23 f~~gi~l---I~G~nGsGKSSIldAI~~A 48 (908)
T COG0419 23 FDSGIFL---IVGPNGAGKSSILDAITFA 48 (908)
T ss_pred CCCCeEE---EECCCCCcHHHHHHHHHHH
Confidence 4566777 999999999999 56665
No 293
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.80 E-value=0.042 Score=42.15 Aligned_cols=26 Identities=8% Similarity=-0.068 Sum_probs=21.9
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhc
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~ 44 (115)
=.+.+++. |+||+|||||+|..-||.
T Consensus 26 i~~Ge~~~---i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14262 26 IFKNQITA---IIGPSGCGKTTLLRSINR 51 (250)
T ss_pred ecCCCEEE---EECCCCCCHHHHHHHHhc
Confidence 34667766 899999999999999994
No 294
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=95.80 E-value=0.008 Score=50.84 Aligned_cols=27 Identities=7% Similarity=-0.081 Sum_probs=23.7
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
++|+.||.|+|||.||..+|...+...
T Consensus 181 gvLL~GppGTGKT~LAkalA~~l~~~f 207 (398)
T PTZ00454 181 GVLLYGPPGTGKTMLAKAVAHHTTATF 207 (398)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCCE
Confidence 466799999999999999999988765
No 295
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=95.78 E-value=0.046 Score=42.39 Aligned_cols=26 Identities=12% Similarity=-0.043 Sum_probs=22.0
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcC
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~ 45 (115)
.+.+++. |+||+|||||+|..-|+.-
T Consensus 37 ~~Ge~~~---i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 37 AKNQVTA---FIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred cCCCEEE---EECCCCCCHHHHHHHHhcc
Confidence 4666666 8999999999999999855
No 296
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.77 E-value=0.058 Score=41.40 Aligned_cols=27 Identities=7% Similarity=-0.031 Sum_probs=22.9
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~ 46 (115)
.+.+++. |+||.|+|||+|..-|+.-.
T Consensus 28 ~~Ge~~~---l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 28 PQNGVFA---LMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred cCCCEEE---EECCCCCCHHHHHHHHhccC
Confidence 4777777 89999999999999888653
No 297
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=95.76 E-value=0.0092 Score=41.25 Aligned_cols=23 Identities=13% Similarity=0.026 Sum_probs=20.1
Q ss_pred eeeeeccCCCchhHHHHHHhcCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~ 46 (115)
.++++|+.+||||+|..+++.+.
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~ 24 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGR 24 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47889999999999999998653
No 298
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.76 E-value=0.009 Score=53.23 Aligned_cols=36 Identities=11% Similarity=-0.074 Sum_probs=26.7
Q ss_pred ceeEeeeeeeccCCCchhHHHHHHhcCC-------CceEeeccceee
Q psy7554 19 DQVYLSYLSCLPDSVCPHAHQVDLTDGP-------DLFCRTYQVYLM 58 (115)
Q Consensus 19 ~~~~~~~li~GpTasGKS~lai~LA~~~-------~~eI~IsaDSmQ 58 (115)
.+++. ++||||+|||.++..||..+ ..-+ |++|+..
T Consensus 350 G~vIa---LVGPtGvGKTTtaakLAa~la~~~~gkkVaL-IdtDtyR 392 (559)
T PRK12727 350 GGVIA---LVGPTGAGKTTTIAKLAQRFAAQHAPRDVAL-VTTDTQR 392 (559)
T ss_pred CCEEE---EECCCCCCHHHHHHHHHHHHHHhcCCCceEE-Eeccccc
Confidence 45554 88999999999998888532 2346 8899844
No 299
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.76 E-value=0.01 Score=51.09 Aligned_cols=32 Identities=3% Similarity=-0.244 Sum_probs=25.3
Q ss_pred eeeeccCCCchhHHHHHHhcCC-----CceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP-----DLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~-----~~eI~IsaDSm 57 (115)
++++|++|||||+++..||..+ ...+ |++|..
T Consensus 98 I~lvG~~GsGKTTtaakLA~~L~~~g~kV~l-V~~D~~ 134 (437)
T PRK00771 98 IMLVGLQGSGKTTTAAKLARYFKKKGLKVGL-VAADTY 134 (437)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCeEEE-ecCCCC
Confidence 4579999999999999988544 3456 899964
No 300
>CHL00181 cbbX CbbX; Provisional
Probab=95.75 E-value=0.0073 Score=48.71 Aligned_cols=23 Identities=4% Similarity=-0.156 Sum_probs=20.1
Q ss_pred eeeeeccCCCchhHHHHHHhcCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~ 46 (115)
.+++.||+|+|||.+|..+|+.+
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999998754
No 301
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.75 E-value=0.0094 Score=51.33 Aligned_cols=67 Identities=13% Similarity=0.021 Sum_probs=44.0
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHhcCC-------CceEeecccee--------eecc---CCceecCCCCHHH-----
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLTDGP-------DLFCRTYQVYL--------MVYK---GLDVITNKVTPEE----- 74 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA~~~-------~~eI~IsaDSm--------QVYk---gldIgTAKPs~eE----- 74 (115)
|.-|+. ++||||+|||+--.+||.++ +.-| |..|+. +.|- ++|+--++++.|-
T Consensus 202 ~~~vi~---LVGPTGVGKTTTlAKLAar~~~~~~~~kVai-ITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~ 277 (407)
T COG1419 202 QKRVIA---LVGPTGVGKTTTLAKLAARYVMLKKKKKVAI-ITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIE 277 (407)
T ss_pred cCcEEE---EECCCCCcHHHHHHHHHHHHHhhccCcceEE-EEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHH
Confidence 345555 79999999998777777544 4567 899984 3354 3466666654432
Q ss_pred -hcCCCeeeecccCC
Q psy7554 75 -AEGIPHHLLDFLDP 88 (115)
Q Consensus 75 -~~~IpHHLid~ldp 88 (115)
++...|=|+|-.--
T Consensus 278 ~l~~~d~ILVDTaGr 292 (407)
T COG1419 278 ALRDCDVILVDTAGR 292 (407)
T ss_pred HhhcCCEEEEeCCCC
Confidence 45567777776543
No 302
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.75 E-value=0.014 Score=44.84 Aligned_cols=27 Identities=7% Similarity=-0.188 Sum_probs=22.5
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhcC
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~~ 45 (115)
=.|.+++. |+||.|||||+|..-||.-
T Consensus 28 i~~Ge~~~---I~G~nGsGKSTLl~~i~G~ 54 (251)
T PRK14244 28 IYKREVTA---FIGPSGCGKSTFLRCFNRM 54 (251)
T ss_pred EcCCCEEE---EECCCCCCHHHHHHHHHhh
Confidence 34677776 8999999999999999854
No 303
>KOG0744|consensus
Probab=95.74 E-value=0.0073 Score=51.79 Aligned_cols=21 Identities=14% Similarity=-0.037 Sum_probs=19.7
Q ss_pred eeeccCCCchhHHHHHHhcCC
Q psy7554 26 LSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 26 li~GpTasGKS~lai~LA~~~ 46 (115)
|+.||.|+|||.|...|||++
T Consensus 181 LlhGPPGTGKTSLCKaLaQkL 201 (423)
T KOG0744|consen 181 LLHGPPGTGKTSLCKALAQKL 201 (423)
T ss_pred EEeCCCCCChhHHHHHHHHhh
Confidence 479999999999999999987
No 304
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.74 E-value=0.0072 Score=51.41 Aligned_cols=24 Identities=4% Similarity=-0.137 Sum_probs=21.4
Q ss_pred EeeeeeeccCCCchhHHHHHHhcC
Q psy7554 22 YLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 22 ~~~~li~GpTasGKS~lai~LA~~ 45 (115)
|..++|.||+|+|||.|+..+|..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~ 153 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Confidence 778889999999999999888865
No 305
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.74 E-value=0.0065 Score=52.97 Aligned_cols=26 Identities=15% Similarity=-0.015 Sum_probs=22.9
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCce
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLF 49 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~e 49 (115)
++|++||.|+|||.+|..+|+.++++
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARILAKSLNCE 65 (527)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 45599999999999999999999764
No 306
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.73 E-value=0.048 Score=42.49 Aligned_cols=25 Identities=8% Similarity=-0.020 Sum_probs=21.6
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhc
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~ 44 (115)
.+.+++. |+||+|||||+|..-||.
T Consensus 45 ~~Ge~~~---i~G~nGsGKSTLl~~l~G 69 (268)
T PRK14248 45 EKHAVTA---LIGPSGCGKSTFLRSINR 69 (268)
T ss_pred cCCCEEE---EECCCCCCHHHHHHHHHh
Confidence 5677776 899999999999998885
No 307
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.73 E-value=0.0076 Score=52.85 Aligned_cols=25 Identities=12% Similarity=-0.037 Sum_probs=23.2
Q ss_pred eeeccCCCchhHHHHHHhcCCCceE
Q psy7554 26 LSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 26 li~GpTasGKS~lai~LA~~~~~eI 50 (115)
|++||+|+|||+...-||++++.+|
T Consensus 49 lLtGP~G~GKtttv~~La~elg~~v 73 (519)
T PF03215_consen 49 LLTGPSGCGKTTTVKVLAKELGFEV 73 (519)
T ss_pred EEECCCCCCHHHHHHHHHHHhCCee
Confidence 5899999999999999999998876
No 308
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=95.73 E-value=0.061 Score=41.61 Aligned_cols=28 Identities=14% Similarity=-0.054 Sum_probs=23.4
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhcCC
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~~~ 46 (115)
=.|.+++. |+||.|||||+|..-||.-.
T Consensus 27 i~~Ge~~~---i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 27 IEPRSVTA---FIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred EcCCcEEE---EECCCCCCHHHHHHHHhccC
Confidence 35778877 89999999999999998643
No 309
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.72 E-value=0.0065 Score=53.11 Aligned_cols=26 Identities=12% Similarity=-0.022 Sum_probs=22.9
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCce
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLF 49 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~e 49 (115)
++|++||.|+|||.+|..+|+.++++
T Consensus 45 a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 44599999999999999999998764
No 310
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.72 E-value=0.0098 Score=45.94 Aligned_cols=26 Identities=4% Similarity=-0.040 Sum_probs=20.5
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcC
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~ 45 (115)
.+.++++ |+||+|+|||.++.++|..
T Consensus 28 ~~g~~~~---i~g~~G~GKT~l~~~~~~~ 53 (271)
T cd01122 28 RKGELII---LTAGTGVGKTTFLREYALD 53 (271)
T ss_pred cCCcEEE---EEcCCCCCHHHHHHHHHHH
Confidence 3455665 9999999999998887654
No 311
>PRK10436 hypothetical protein; Provisional
Probab=95.72 E-value=0.0068 Score=52.40 Aligned_cols=21 Identities=10% Similarity=-0.054 Sum_probs=15.9
Q ss_pred eeeeccCCCchhHHHHHHhcC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~ 45 (115)
+||+||||||||+....+-+.
T Consensus 221 iLvtGpTGSGKTTtL~a~l~~ 241 (462)
T PRK10436 221 ILVTGPTGSGKTVTLYSALQT 241 (462)
T ss_pred EEEECCCCCChHHHHHHHHHh
Confidence 559999999999876544333
No 312
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=95.72 E-value=0.0068 Score=53.14 Aligned_cols=22 Identities=9% Similarity=-0.130 Sum_probs=17.0
Q ss_pred eeeeccCCCchhHHHHHHhcCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~ 46 (115)
+||+||||||||++...+.+.+
T Consensus 319 ilv~G~tGSGKTTtl~a~l~~~ 340 (564)
T TIGR02538 319 VLVTGPTGSGKTVSLYTALNIL 340 (564)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 4599999999998865555444
No 313
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.72 E-value=0.07 Score=40.86 Aligned_cols=27 Identities=7% Similarity=-0.084 Sum_probs=22.8
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~ 46 (115)
.|.+++. |+||.|+|||+|..-||..+
T Consensus 28 ~~Ge~~~---i~G~nGsGKSTLl~~i~G~~ 54 (252)
T PRK14272 28 QRGTVNA---LIGPSGCGKTTFLRAINRMH 54 (252)
T ss_pred cCCCEEE---EECCCCCCHHHHHHHHhccC
Confidence 4667766 89999999999999999764
No 314
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.72 E-value=0.0079 Score=52.08 Aligned_cols=23 Identities=9% Similarity=-0.060 Sum_probs=18.2
Q ss_pred eeeeccCCCchhHHHHHHhcCCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD 47 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~ 47 (115)
++|+||||||||++...+-..++
T Consensus 245 ilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 245 ILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred EEEEcCCCCCHHHHHHHHHhccC
Confidence 45999999999999876655553
No 315
>PRK05973 replicative DNA helicase; Provisional
Probab=95.71 E-value=0.0083 Score=47.78 Aligned_cols=24 Identities=13% Similarity=0.058 Sum_probs=19.5
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHhc
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA~ 44 (115)
|..+++ |.|++|+|||.|++++|.
T Consensus 63 ~Gsl~L---IaG~PG~GKT~lalqfa~ 86 (237)
T PRK05973 63 PGDLVL---LGARPGHGKTLLGLELAV 86 (237)
T ss_pred CCCEEE---EEeCCCCCHHHHHHHHHH
Confidence 444555 999999999999998875
No 316
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.71 E-value=0.0036 Score=50.83 Aligned_cols=26 Identities=4% Similarity=-0.199 Sum_probs=22.7
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
++++|+.|||||.+|.+||+.+.-+|
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i 29 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEI 29 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhh
Confidence 57899999999999999999886554
No 317
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=95.70 E-value=0.0095 Score=41.35 Aligned_cols=22 Identities=18% Similarity=0.149 Sum_probs=19.0
Q ss_pred eeeeeccCCCchhHHHHHHhcC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~ 45 (115)
-++|+|+++||||+|..++...
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~ 24 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQG 24 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3678999999999999998854
No 318
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.69 E-value=0.0053 Score=51.90 Aligned_cols=15 Identities=13% Similarity=0.009 Sum_probs=12.4
Q ss_pred eeeeccCCCchhHHH
Q psy7554 25 YLSCLPDSVCPHAHQ 39 (115)
Q Consensus 25 ~li~GpTasGKS~la 39 (115)
+|++||||||||+--
T Consensus 128 ILVTGpTGSGKSTTl 142 (353)
T COG2805 128 ILVTGPTGSGKSTTL 142 (353)
T ss_pred EEEeCCCCCcHHHHH
Confidence 569999999999643
No 319
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.69 E-value=0.0057 Score=48.66 Aligned_cols=65 Identities=3% Similarity=-0.003 Sum_probs=37.9
Q ss_pred eeeeeccCCCchhHHHHHHhcCC---CceEeeccceeeeccCCcee--cCCCC----HHHhcCCCeeeecccCCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGP---DLFCRTYQVYLMVYKGLDVI--TNKVT----PEEAEGIPHHLLDFLDPN 89 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~---~~eI~IsaDSmQVYkgldIg--TAKPs----~eE~~~IpHHLid~ldp~ 89 (115)
++++.||+|+|||.|+..+|..+ +..+ +..+.-++...+.-. .+..+ .+++..+..-+||-+...
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v-~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~ 174 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSV-LIITVADIMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQ 174 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeE-EEEEHHHHHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCC
Confidence 56789999999999999998765 3333 333333332222111 11111 233567777888877654
No 320
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=95.68 E-value=0.014 Score=39.37 Aligned_cols=21 Identities=14% Similarity=-0.154 Sum_probs=18.8
Q ss_pred eeeeccCCCchhHHHHHHhcC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~ 45 (115)
++|.|+|++|||+|--.|...
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 568999999999999999964
No 321
>KOG3308|consensus
Probab=95.68 E-value=0.0079 Score=48.21 Aligned_cols=35 Identities=11% Similarity=-0.271 Sum_probs=29.3
Q ss_pred eeeeccCCCchhHHHHHHhcCCC-ceEeeccceeeeccC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD-LFCRTYQVYLMVYKG 62 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~-~eI~IsaDSmQVYkg 62 (115)
+=|.|.|.||||+||-.|++-|. +.+ |+.|- +||-
T Consensus 7 vgiSG~TnsGKTTLak~l~~~f~~~~l-IhqDD--FyKp 42 (225)
T KOG3308|consen 7 VGISGCTNSGKTTLAKSLHRFFPGCSL-IHQDD--FYKP 42 (225)
T ss_pred EEeecccCCCHhHHHHHHHHHccCCee-ecccc--ccCc
Confidence 45799999999999999999985 567 99995 5653
No 322
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.68 E-value=0.0094 Score=45.02 Aligned_cols=23 Identities=9% Similarity=-0.057 Sum_probs=19.7
Q ss_pred ceeEeeeeeeccCCCchhHHHHHHhc
Q psy7554 19 DQVYLSYLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 19 ~~~~~~~li~GpTasGKS~lai~LA~ 44 (115)
..|++ |.||+|||||.|+..+|.
T Consensus 23 g~i~~---i~G~~GsGKT~l~~~la~ 45 (225)
T PRK09361 23 GTITQ---IYGPPGSGKTNICLQLAV 45 (225)
T ss_pred CeEEE---EECCCCCCHHHHHHHHHH
Confidence 45655 999999999999999985
No 323
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.68 E-value=0.0089 Score=47.16 Aligned_cols=20 Identities=0% Similarity=-0.318 Sum_probs=17.3
Q ss_pred eeeeccCCCchhHHHHHHhc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~ 44 (115)
++|+||+|+|||.|+.++|.
T Consensus 39 ~lI~G~pGtGKT~l~~qf~~ 58 (259)
T TIGR03878 39 INITGVSDTGKSLMVEQFAV 58 (259)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 34999999999999998764
No 324
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.67 E-value=0.014 Score=49.47 Aligned_cols=34 Identities=12% Similarity=-0.143 Sum_probs=25.3
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceEeec
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFCRTY 53 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI~Is 53 (115)
.|.+.+. |+||+|||||+|+.-|+.-. .|+|.++
T Consensus 359 ~~G~~va---IvG~SGsGKSTLl~lL~g~~~p~~G~I~i~ 395 (529)
T TIGR02868 359 PPGERVA---ILGPSGSGKSTLLMLLTGLLDPLQGEVTLD 395 (529)
T ss_pred cCCCEEE---EECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 4556655 89999999999998887554 4666443
No 325
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=95.66 E-value=0.0091 Score=40.72 Aligned_cols=20 Identities=15% Similarity=-0.064 Sum_probs=18.0
Q ss_pred eeeeccCCCchhHHHHHHhc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~ 44 (115)
++++|++|+|||+|...|++
T Consensus 2 i~l~G~~g~GKTtL~~~l~~ 21 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTN 21 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 46799999999999999994
No 326
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.66 E-value=0.011 Score=43.02 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=18.3
Q ss_pred ceeEeeeeeeccCCCchhHHHHHHhc
Q psy7554 19 DQVYLSYLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 19 ~~~~~~~li~GpTasGKS~lai~LA~ 44 (115)
.++.+ |.||+|+|||.++.++|.
T Consensus 32 g~l~~---i~g~~g~GKT~~~~~l~~ 54 (193)
T PF13481_consen 32 GELTL---IAGPPGSGKTTLALQLAA 54 (193)
T ss_dssp TSEEE---EEECSTSSHHHHHHHHHH
T ss_pred CeEEE---EEeCCCCCHHHHHHHHHH
Confidence 44444 899999999999887774
No 327
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.66 E-value=0.0096 Score=47.54 Aligned_cols=20 Identities=5% Similarity=-0.351 Sum_probs=17.7
Q ss_pred eeeccCCCchhHHHHHHhcC
Q psy7554 26 LSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 26 li~GpTasGKS~lai~LA~~ 45 (115)
.|+||.|||||.|+..+|-.
T Consensus 99 ei~G~~g~GKT~l~~~~~~~ 118 (310)
T TIGR02236 99 EVFGEFGSGKTQICHQLAVN 118 (310)
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 49999999999999999843
No 328
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.65 E-value=0.0079 Score=49.24 Aligned_cols=24 Identities=17% Similarity=-0.015 Sum_probs=20.8
Q ss_pred eeeeeccCCCchhHHHHHHhcCCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPD 47 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~ 47 (115)
|++|+|+||||||++-..+....+
T Consensus 145 siii~G~t~sGKTt~lnall~~Ip 168 (312)
T COG0630 145 SIIICGGTASGKTTLLNALLDFIP 168 (312)
T ss_pred cEEEECCCCCCHHHHHHHHHHhCC
Confidence 688999999999999888876654
No 329
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.65 E-value=0.04 Score=44.28 Aligned_cols=32 Identities=3% Similarity=-0.372 Sum_probs=24.3
Q ss_pred eeeccCCCchhHHHHHHhcC-----CCceEeeccceee
Q psy7554 26 LSCLPDSVCPHAHQVDLTDG-----PDLFCRTYQVYLM 58 (115)
Q Consensus 26 li~GpTasGKS~lai~LA~~-----~~~eI~IsaDSmQ 58 (115)
.|+||+|||||+|...|+.. ....+ |+.|.-.
T Consensus 38 ~i~G~~G~GKttl~~~l~~~~~~~~~~v~~-i~~D~~~ 74 (300)
T TIGR00750 38 GITGTPGAGKSTLLEALGMELRRRGLKVAV-IAVDPSS 74 (300)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEEE-EecCCCC
Confidence 37899999999999887754 34456 8888533
No 330
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.65 E-value=0.0093 Score=53.36 Aligned_cols=31 Identities=6% Similarity=-0.151 Sum_probs=25.6
Q ss_pred eeeeeeccCCCchhHHHHHHhcCCCceEeecc
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQ 54 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~~~eI~Isa 54 (115)
.++|+.||+|+|||.||..+|...+... ++.
T Consensus 488 ~giLL~GppGtGKT~lakalA~e~~~~f-i~v 518 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLAKAVATESGANF-IAV 518 (733)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhcCCCE-EEE
Confidence 3567899999999999999999887665 443
No 331
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.65 E-value=0.0059 Score=52.29 Aligned_cols=29 Identities=3% Similarity=-0.131 Sum_probs=24.2
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHhcCC
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA~~~ 46 (115)
++..|..++|.||+|+|||.|+..+|..+
T Consensus 137 ~~~~~npl~L~G~~G~GKTHLl~Ai~~~l 165 (445)
T PRK12422 137 KGFPFNPIYLFGPEGSGKTHLMQAAVHAL 165 (445)
T ss_pred cCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 34567888899999999999999988643
No 332
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.64 E-value=0.01 Score=37.28 Aligned_cols=65 Identities=6% Similarity=-0.140 Sum_probs=41.8
Q ss_pred eeeeccCCCchhHHHHHHhcCC---CceEeeccceeeeccCCceecCCCC--HHHhcCCCeeeecccCCCCc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP---DLFCRTYQVYLMVYKGLDVITNKVT--PEEAEGIPHHLLDFLDPNTR 91 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~---~~eI~IsaDSmQVYkgldIgTAKPs--~eE~~~IpHHLid~ldp~e~ 91 (115)
+++.|..|+|||.++..||..+ +-.+ ...|...+.....-... +. ........++++=.++++..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v-~~~~d~iivD~~~~~~~-~~~~~~~~~~~~~~vi~v~~~~~~ 71 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRV-LLIDDYVLIDTPPGLGL-LVLLCLLALLAADLVIIVTTPEAL 71 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeE-EEECCEEEEeCCCCccc-hhhhhhhhhhhCCEEEEecCCchh
Confidence 4578999999999999998775 4566 66775555544422211 11 02344567778777777754
No 333
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.011 Score=50.01 Aligned_cols=33 Identities=6% Similarity=-0.247 Sum_probs=28.9
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
.+|+.||.|+|||.||..+|...+... ++.|.-
T Consensus 278 giLl~GpPGtGKT~lAkava~~~~~~f-i~v~~~ 310 (494)
T COG0464 278 GVLLYGPPGTGKTLLAKAVALESRSRF-ISVKGS 310 (494)
T ss_pred eeEEECCCCCCHHHHHHHHHhhCCCeE-EEeeCH
Confidence 667899999999999999999888887 777665
No 334
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.63 E-value=0.022 Score=41.51 Aligned_cols=31 Identities=3% Similarity=-0.358 Sum_probs=24.1
Q ss_pred eeeeccCCCchhHHHHHHhcCC-----CceEeeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP-----DLFCRTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~-----~~eI~IsaDS 56 (115)
+.++|+.|||||.++..++..+ ...+ +.+|-
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~i-i~~D~ 37 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAV-LAIDP 37 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEE-EEeCC
Confidence 4579999999999999888654 2345 78884
No 335
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.62 E-value=0.011 Score=45.87 Aligned_cols=25 Identities=12% Similarity=0.161 Sum_probs=21.0
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhc
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~ 44 (115)
+|.++|+ |.|++|+|||++++++|.
T Consensus 17 ~~g~L~v---i~a~pg~GKT~~~l~ia~ 41 (259)
T PF03796_consen 17 RPGELTV---IAARPGVGKTAFALQIAL 41 (259)
T ss_dssp -TT-EEE---EEESTTSSHHHHHHHHHH
T ss_pred CcCcEEE---EEecccCCchHHHHHHHH
Confidence 7888888 999999999999998885
No 336
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=95.62 E-value=0.016 Score=45.30 Aligned_cols=27 Identities=7% Similarity=-0.057 Sum_probs=23.0
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~ 46 (115)
.+++++. |+||+|||||+|..-||.-.
T Consensus 44 ~~Ge~~~---I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 44 EKNKITA---LIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred cCCCEEE---EECCCCCCHHHHHHHHHhcc
Confidence 5677777 89999999999999998654
No 337
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.62 E-value=0.01 Score=51.44 Aligned_cols=32 Identities=6% Similarity=-0.104 Sum_probs=26.9
Q ss_pred eeeeeeccCCCchhHHHHHHhcCCCceEe-ecc
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGPDLFCR-TYQ 54 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~~~eI~-Isa 54 (115)
-|.|+-||.|+|||+||.-||+..+...+ +||
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sA 81 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSA 81 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEecc
Confidence 36677999999999999999999987653 565
No 338
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=95.62 E-value=0.026 Score=42.07 Aligned_cols=33 Identities=9% Similarity=-0.207 Sum_probs=19.0
Q ss_pred eeeeeccCCCchhHHHH----HHhcC---CCceEeecccee
Q psy7554 24 SYLSCLPDSVCPHAHQV----DLTDG---PDLFCRTYQVYL 57 (115)
Q Consensus 24 ~~li~GpTasGKS~lai----~LA~~---~~~eI~IsaDSm 57 (115)
.++|+|+||||||.+.. .++.. -+..+ .-+|..
T Consensus 40 h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l-~iiD~k 79 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQL-YIIDPK 79 (205)
T ss_dssp SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEE-EEE-TT
T ss_pred eEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEE-EEEcCC
Confidence 57899999999997644 44443 23444 445654
No 339
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.61 E-value=0.01 Score=46.24 Aligned_cols=25 Identities=8% Similarity=-0.267 Sum_probs=22.4
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
|.|+|+.|+|||+++-.|+ +++-.+
T Consensus 3 I~ITGTPGvGKTT~~~~L~-~lg~~~ 27 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR-ELGYKV 27 (180)
T ss_pred EEEeCCCCCchHHHHHHHH-HhCCce
Confidence 6799999999999999999 777666
No 340
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=95.61 E-value=0.0088 Score=45.76 Aligned_cols=26 Identities=4% Similarity=-0.224 Sum_probs=23.3
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
|.|-|..|||||+++-.|++.++.+.
T Consensus 2 I~iEG~~GsGKSTl~~~L~~~l~~~~ 27 (219)
T cd02030 2 ITVDGNIASGKGKLAKELAEKLGMKY 27 (219)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCe
Confidence 56899999999999999999988765
No 341
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.61 E-value=0.012 Score=43.88 Aligned_cols=31 Identities=3% Similarity=-0.167 Sum_probs=25.5
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+.+++. |+||.|||||+|..-|+.-+ .|+|
T Consensus 24 ~~Ge~~~---l~G~nGsGKSTLl~~l~G~~~~~~G~v 57 (213)
T cd03301 24 ADGEFVV---LLGPSGCGKTTTLRMIAGLEEPTSGRI 57 (213)
T ss_pred cCCcEEE---EECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 5777877 89999999999999998654 4666
No 342
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.61 E-value=0.0099 Score=48.03 Aligned_cols=25 Identities=20% Similarity=-0.019 Sum_probs=22.4
Q ss_pred eeeeccCCCchhHHHHHHhcCCCce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLF 49 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~e 49 (115)
+++-||+|+|||.|+..+|+.++..
T Consensus 46 vll~G~PG~gKT~la~~lA~~l~~~ 70 (329)
T COG0714 46 VLLEGPPGVGKTLLARALARALGLP 70 (329)
T ss_pred EEEECCCCccHHHHHHHHHHHhCCC
Confidence 5679999999999999999999854
No 343
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.61 E-value=0.0093 Score=53.37 Aligned_cols=31 Identities=6% Similarity=-0.039 Sum_probs=25.5
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeeccc
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQV 55 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaD 55 (115)
.+++.||+|+|||.|+..+|..++..+ +..+
T Consensus 214 giLL~GppGtGKT~laraia~~~~~~~-i~i~ 244 (733)
T TIGR01243 214 GVLLYGPPGTGKTLLAKAVANEAGAYF-ISIN 244 (733)
T ss_pred eEEEECCCCCChHHHHHHHHHHhCCeE-EEEe
Confidence 456799999999999999999988766 4433
No 344
>PRK04296 thymidine kinase; Provisional
Probab=95.60 E-value=0.007 Score=45.54 Aligned_cols=22 Identities=0% Similarity=-0.269 Sum_probs=19.2
Q ss_pred eeeeccCCCchhHHHHHHhcCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~ 46 (115)
.+|+||.|+|||++++.++.+.
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHH
Confidence 4689999999999999998664
No 345
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.60 E-value=0.022 Score=41.92 Aligned_cols=31 Identities=3% Similarity=-0.344 Sum_probs=25.3
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+.+++. |+||.|||||+|..-||... .|+|
T Consensus 24 ~~G~~~~---i~G~nGsGKSTLl~~l~G~~~~~~G~i 57 (182)
T cd03215 24 RAGEIVG---IAGLVGNGQTELAEALFGLRPPASGEI 57 (182)
T ss_pred cCCcEEE---EECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 4677776 89999999999999998654 4666
No 346
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.60 E-value=0.01 Score=44.80 Aligned_cols=19 Identities=0% Similarity=-0.179 Sum_probs=16.4
Q ss_pred eeeeccCCCchhHHHHHHh
Q psy7554 25 YLSCLPDSVCPHAHQVDLT 43 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA 43 (115)
++|.||+|+|||.|+..++
T Consensus 23 ~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 23 VAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred EEEECCCCCChHHHHHHHH
Confidence 3489999999999988765
No 347
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.59 E-value=0.011 Score=44.75 Aligned_cols=33 Identities=9% Similarity=-0.133 Sum_probs=26.2
Q ss_pred cCCCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 15 TGTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 15 ~~~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
+=.+.+++. |+||.|||||+|..-||.-+ .|+|
T Consensus 23 ~i~~Ge~~~---i~G~nGsGKSTLl~~l~Gl~~~~~G~i 58 (241)
T cd03256 23 SINPGEFVA---LIGPSGAGKSTLLRCLNGLVEPTSGSV 58 (241)
T ss_pred EEcCCCEEE---EECCCCCCHHHHHHHHhCCcCCCCceE
Confidence 445777777 99999999999999998543 4666
No 348
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.59 E-value=0.012 Score=44.86 Aligned_cols=31 Identities=13% Similarity=-0.095 Sum_probs=25.2
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.|.+++. |+||.|||||+|..-|+.-. .|.|
T Consensus 25 ~~Ge~~~---i~G~nGsGKSTLl~~l~G~~~p~~G~i 58 (236)
T TIGR03864 25 RPGEFVA---LLGPNGAGKSTLFSLLTRLYVAQEGQI 58 (236)
T ss_pred cCCCEEE---EECCCCCCHHHHHHHHhCCcCCCceEE
Confidence 5777777 89999999999999998543 3666
No 349
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.58 E-value=0.019 Score=44.05 Aligned_cols=26 Identities=8% Similarity=-0.089 Sum_probs=22.1
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcC
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~ 45 (115)
.+.+++. |+||.|||||+|..-||--
T Consensus 28 ~~Ge~~~---i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14251 28 EEKELTA---LIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred cCCCEEE---EECCCCCCHHHHHHHHhhc
Confidence 4667776 8999999999999999854
No 350
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.58 E-value=0.0075 Score=51.03 Aligned_cols=29 Identities=7% Similarity=-0.032 Sum_probs=24.5
Q ss_pred eEeeeeeeccCCCchhHHHHHHhcCCCce
Q psy7554 21 VYLSYLSCLPDSVCPHAHQVDLTDGPDLF 49 (115)
Q Consensus 21 ~~~~~li~GpTasGKS~lai~LA~~~~~e 49 (115)
+--++|+.||.|+|||.+|..+|+.+.++
T Consensus 35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 35 MTHAWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 44567799999999999999999987653
No 351
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.58 E-value=0.013 Score=48.77 Aligned_cols=66 Identities=11% Similarity=-0.018 Sum_probs=39.8
Q ss_pred eeeeccCCCchhHHHHHHhcCCCc-----eEeeccceeeeccCCceecCCCCH---HHhcCCCee-----eecccCCCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDL-----FCRTYQVYLMVYKGLDVITNKVTP---EEAEGIPHH-----LLDFLDPNT 90 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~-----eI~IsaDSmQVYkgldIgTAKPs~---eE~~~IpHH-----Lid~ldp~e 90 (115)
+|+.||.|+|||.++..||+-++. .+.+++++.|....+.-++...-. --...+||+ |+|-++.+.
T Consensus 32 vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~ 110 (334)
T PRK13407 32 VLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIER 110 (334)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCcccccCCccccCCCCCCcceeecchhhhh
Confidence 668999999999999999998842 111355566655433222221100 002347777 888666553
No 352
>PF13245 AAA_19: Part of AAA domain
Probab=95.58 E-value=0.007 Score=40.04 Aligned_cols=19 Identities=5% Similarity=-0.151 Sum_probs=15.4
Q ss_pred eeccCCCchhHHHHHHhcC
Q psy7554 27 SCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 27 i~GpTasGKS~lai~LA~~ 45 (115)
|.||.|||||.++++++..
T Consensus 15 v~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 15 VQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 7999999999777666543
No 353
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.57 E-value=0.012 Score=44.16 Aligned_cols=25 Identities=4% Similarity=-0.214 Sum_probs=20.8
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHhcC
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA~~ 45 (115)
+.+|+. |.||+|+|||.|+..+|..
T Consensus 18 ~g~v~~---I~G~~GsGKT~l~~~ia~~ 42 (226)
T cd01393 18 TGRITE---IFGEFGSGKTQLCLQLAVE 42 (226)
T ss_pred CCcEEE---EeCCCCCChhHHHHHHHHH
Confidence 355666 9999999999999999753
No 354
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.57 E-value=0.006 Score=49.13 Aligned_cols=33 Identities=9% Similarity=-0.016 Sum_probs=24.5
Q ss_pred eeeeccCCCchhHHHHHHhcCC-----CceEeeccceee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP-----DLFCRTYQVYLM 58 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~-----~~eI~IsaDSmQ 58 (115)
++|+|..|||||.+|.+|++.+ ...| |+-|++.
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~-i~~~~~~ 41 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVI-ISDDSLG 41 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEE-E-THHHH
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEE-Ecccccc
Confidence 6799999999999999999853 4456 8888887
No 355
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.57 E-value=0.013 Score=42.96 Aligned_cols=32 Identities=6% Similarity=-0.315 Sum_probs=25.5
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
=.+.+++. |.||+|||||+|..-||.-. .|+|
T Consensus 25 i~~Ge~~~---i~G~nGsGKStLl~~l~G~~~~~~G~i 59 (178)
T cd03247 25 LKQGEKIA---LLGRSGSGKSTLLQLLTGDLKPQQGEI 59 (178)
T ss_pred EcCCCEEE---EECCCCCCHHHHHHHHhccCCCCCCEE
Confidence 34677777 89999999999999998654 4666
No 356
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=95.56 E-value=0.01 Score=45.55 Aligned_cols=21 Identities=0% Similarity=-0.165 Sum_probs=18.7
Q ss_pred eeeeccCCCchhHHHHHHhcC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~ 45 (115)
+.|.|+.|+|||+||.++++.
T Consensus 22 v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 22 VAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp EEEEESTTSSHHHHHHHHHCH
T ss_pred EEEEcCCcCCcceeeeecccc
Confidence 348999999999999999965
No 357
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.56 E-value=0.0084 Score=52.91 Aligned_cols=36 Identities=11% Similarity=-0.238 Sum_probs=27.7
Q ss_pred eeeeccCCCchhHHHHHHhcCCCc------eEeeccceeeeccCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDL------FCRTYQVYLMVYKGL 63 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~------eI~IsaDSmQVYkgl 63 (115)
++++|+.|||||++|..||+.++. .+ +..| .+-++|
T Consensus 395 Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~-lD~D--~vr~~l 436 (568)
T PRK05537 395 VFFTGLSGAGKSTIAKALMVKLMEMRGRPVTL-LDGD--VVRKHL 436 (568)
T ss_pred EEEECCCCChHHHHHHHHHHHhhhccCceEEE-eCCc--HHHHhc
Confidence 567999999999999999999874 44 5444 445555
No 358
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=95.55 E-value=0.0098 Score=44.40 Aligned_cols=21 Identities=10% Similarity=-0.004 Sum_probs=18.1
Q ss_pred eeeeccCCCchhHHHHHHhcC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~ 45 (115)
++++||+|+|||+|+-.|-..
T Consensus 4 imliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 4 IMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred EEEECCCCCCHHHHHHHHcCC
Confidence 678999999999999888643
No 359
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.55 E-value=0.019 Score=44.24 Aligned_cols=26 Identities=8% Similarity=-0.110 Sum_probs=22.3
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhc
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~ 44 (115)
=.|.+++. |+||.|||||+|..-||.
T Consensus 29 i~~Ge~~~---i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 29 IPKNRVTA---LIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred ECCCcEEE---EECCCCCCHHHHHHHHhc
Confidence 35777776 899999999999999984
No 360
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.55 E-value=0.019 Score=44.08 Aligned_cols=27 Identities=7% Similarity=-0.089 Sum_probs=22.7
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhcC
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~~ 45 (115)
=.+.+++. |+||.|||||+|..-|+.-
T Consensus 28 i~~Ge~~~---l~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 28 FNQNEITA---LIGPSGCGKSTYLRTLNRM 54 (252)
T ss_pred EcCCCEEE---EECCCCCCHHHHHHHHhcc
Confidence 35777776 8999999999999999863
No 361
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.54 E-value=0.012 Score=44.56 Aligned_cols=32 Identities=0% Similarity=-0.255 Sum_probs=26.2
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
=.+++++. |+||.|||||+|..-||.-+ .|+|
T Consensus 28 i~~Ge~~~---l~G~nGsGKSTLl~~l~G~~~~~~G~i 62 (233)
T cd03258 28 VPKGEIFG---IIGRSGAGKSTLIRCINGLERPTSGSV 62 (233)
T ss_pred EcCCCEEE---EECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 35777777 89999999999999998664 4666
No 362
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=95.53 E-value=0.0083 Score=44.24 Aligned_cols=26 Identities=19% Similarity=0.133 Sum_probs=22.1
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCce
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLF 49 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~e 49 (115)
++|+.||.|+|||.++..+|+.+.++
T Consensus 16 ~~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 16 AYLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 44499999999999999999887653
No 363
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.53 E-value=0.012 Score=44.04 Aligned_cols=33 Identities=6% Similarity=-0.243 Sum_probs=26.1
Q ss_pred cCCCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 15 TGTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 15 ~~~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
+=.+.+++. |+||.|||||+|..-|+.-+ .|+|
T Consensus 26 ~i~~G~~~~---l~G~nGsGKSTLl~~i~Gl~~~~~G~i 61 (218)
T cd03255 26 SIEKGEFVA---IVGPSGSGKSTLLNILGGLDRPTSGEV 61 (218)
T ss_pred EEcCCCEEE---EEcCCCCCHHHHHHHHhCCcCCCceeE
Confidence 335777777 89999999999999998654 4665
No 364
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.53 E-value=0.021 Score=43.88 Aligned_cols=27 Identities=11% Similarity=-0.059 Sum_probs=23.1
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~ 46 (115)
.|.+++. |+||.|||||+|..-||...
T Consensus 28 ~~G~~~~---i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14249 28 PERQITA---IIGPSGCGKSTLLRALNRMN 54 (251)
T ss_pred cCCCEEE---EECCCCCCHHHHHHHHhccc
Confidence 4677776 89999999999999998754
No 365
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.53 E-value=0.012 Score=50.53 Aligned_cols=63 Identities=21% Similarity=0.178 Sum_probs=40.1
Q ss_pred ceeEeeeeeeccCCCchhHHHHHHhcC-------CCceEeeccceee--------ecc---CCceecCCCCH------HH
Q psy7554 19 DQVYLSYLSCLPDSVCPHAHQVDLTDG-------PDLFCRTYQVYLM--------VYK---GLDVITNKVTP------EE 74 (115)
Q Consensus 19 ~~~~~~~li~GpTasGKS~lai~LA~~-------~~~eI~IsaDSmQ--------VYk---gldIgTAKPs~------eE 74 (115)
.+++. ++||||+|||++...||.. ..+.+ |.+|... .|. ++++-+.+... .+
T Consensus 191 g~vi~---lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~-i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~ 266 (420)
T PRK14721 191 GGVYA---LIGPTGVGKTTTTAKLAARAVIRHGADKVAL-LTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHE 266 (420)
T ss_pred CcEEE---EECCCCCCHHHHHHHHHHHHHHhcCCCeEEE-EecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHH
Confidence 45555 8999999999999988853 23456 7788844 222 34555444432 23
Q ss_pred hcCCCeeeecc
Q psy7554 75 AEGIPHHLLDF 85 (115)
Q Consensus 75 ~~~IpHHLid~ 85 (115)
++...+-|||.
T Consensus 267 l~~~d~VLIDT 277 (420)
T PRK14721 267 LRGKHMVLIDT 277 (420)
T ss_pred hcCCCEEEecC
Confidence 45556677776
No 366
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.52 E-value=0.012 Score=44.69 Aligned_cols=33 Identities=6% Similarity=-0.168 Sum_probs=26.1
Q ss_pred cCCCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 15 TGTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 15 ~~~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
+=.+.+++. |+||.|||||+|..-||.-+ .|+|
T Consensus 24 ~i~~Ge~~~---l~G~nGsGKSTLl~~l~Gl~~~~~G~i 59 (243)
T TIGR02315 24 NINPGEFVA---IIGPSGAGKSTLLRCINRLVEPSSGSI 59 (243)
T ss_pred EEcCCCEEE---EECCCCCCHHHHHHHHhCCcCCCccEE
Confidence 335677777 99999999999999988543 4666
No 367
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.52 E-value=0.0081 Score=53.04 Aligned_cols=26 Identities=15% Similarity=-0.033 Sum_probs=22.6
Q ss_pred eeeeeeccCCCchhHHHHHHhcCCCc
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGPDL 48 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~~~ 48 (115)
-++|+.||.|+|||.+|..+|+.+++
T Consensus 39 ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 39 HAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34569999999999999999998864
No 368
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.52 E-value=0.013 Score=44.17 Aligned_cols=33 Identities=9% Similarity=-0.125 Sum_probs=25.9
Q ss_pred cCCCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 15 TGTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 15 ~~~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
+=.+.+++. |+||.|||||+|..-||.-+ .|+|
T Consensus 22 ~i~~Ge~~~---i~G~nGsGKSTLl~~i~G~~~~~~G~i 57 (220)
T cd03265 22 RVRRGEIFG---LLGPNGAGKTTTIKMLTTLLKPTSGRA 57 (220)
T ss_pred EECCCCEEE---EECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 345777777 89999999999999998643 3555
No 369
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.51 E-value=0.014 Score=43.51 Aligned_cols=31 Identities=10% Similarity=-0.151 Sum_probs=25.2
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+.+++. |+||.|+|||+|..-|+.-. .|+|
T Consensus 25 ~~G~~~~---l~G~nGsGKSTLl~~l~G~~~~~~G~i 58 (211)
T cd03225 25 KKGEFVL---IVGPNGSGKSTLLRLLNGLLGPTSGEV 58 (211)
T ss_pred cCCcEEE---EECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 4677777 89999999999999998654 4666
No 370
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.51 E-value=0.014 Score=43.41 Aligned_cols=31 Identities=3% Similarity=-0.212 Sum_probs=25.5
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.|++++. |+||.|||||+|..-||... .|+|
T Consensus 24 ~~Ge~~~---l~G~nGsGKSTLl~~l~G~~~~~~G~i 57 (195)
T PRK13541 24 LPSAITY---IKGANGCGKSSLLRMIAGIMQPSSGNI 57 (195)
T ss_pred cCCcEEE---EECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 5777777 89999999999999998754 3666
No 371
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.49 E-value=0.0099 Score=52.90 Aligned_cols=26 Identities=8% Similarity=-0.050 Sum_probs=23.2
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCce
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLF 49 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~e 49 (115)
++|++||.|+|||.+|..||+.++++
T Consensus 48 a~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 48 AFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 56699999999999999999998754
No 372
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.49 E-value=0.007 Score=48.50 Aligned_cols=23 Identities=4% Similarity=-0.192 Sum_probs=18.9
Q ss_pred eeeeeccCCCchhHHHHHHhcCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~ 46 (115)
+++|.||+|+|||.++..+++.+
T Consensus 42 ~i~I~G~~GtGKT~l~~~~~~~l 64 (365)
T TIGR02928 42 NVFIYGKTGTGKTAVTKYVMKEL 64 (365)
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 34569999999999999888653
No 373
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.49 E-value=0.013 Score=43.13 Aligned_cols=33 Identities=6% Similarity=-0.125 Sum_probs=25.7
Q ss_pred cCCCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 15 TGTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 15 ~~~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
+=.+.+++. |+||.|||||+|..-|+.-. .|.|
T Consensus 14 ~i~~Ge~~~---i~G~nGsGKSTLl~~i~G~~~~~~G~i 49 (190)
T TIGR01166 14 AAERGEVLA---LLGANGAGKSTLLLHLNGLLRPQSGAV 49 (190)
T ss_pred EEcCCCEEE---EECCCCCCHHHHHHHHhCCCCCCceeE
Confidence 345778877 99999999999998888543 3555
No 374
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=95.49 E-value=0.015 Score=48.50 Aligned_cols=48 Identities=6% Similarity=-0.132 Sum_probs=38.5
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCC---ceecCCCCHHH
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGL---DVITNKVTPEE 74 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgl---dIgTAKPs~eE 74 (115)
+++.|+||||||.+.-.|++. +..+ |.+-+..=|+|= .++.++||.+.
T Consensus 144 ivl~G~TGsGKT~iL~~L~~~-~~~v-lDlE~~aehrGS~fG~~~~~qpsQ~~ 194 (345)
T PRK11784 144 VVLGGNTGSGKTELLQALANA-GAQV-LDLEGLANHRGSSFGRLGGPQPSQKD 194 (345)
T ss_pred EecCCCCcccHHHHHHHHHhc-CCeE-EECCchhhhccccccCCCCCCcchHH
Confidence 468999999999999999765 4457 888888888883 56678888765
No 375
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.48 E-value=0.076 Score=40.88 Aligned_cols=27 Identities=7% Similarity=-0.055 Sum_probs=22.5
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~ 46 (115)
.+.+++. |+||+|||||+|..-||.-.
T Consensus 31 ~~Ge~~~---i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 31 LKNSITA---LIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred cCCCEEE---EECCCCCCHHHHHHHHhccc
Confidence 4667776 89999999999999998643
No 376
>PF13479 AAA_24: AAA domain
Probab=95.48 E-value=0.015 Score=44.43 Aligned_cols=30 Identities=13% Similarity=0.072 Sum_probs=22.4
Q ss_pred eeeeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
+.++|.||.|+|||.+|..+ -+..+ |++|.
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~---~k~l~-id~E~ 33 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL---PKPLF-IDTEN 33 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC---CCeEE-EEeCC
Confidence 46789999999999999888 22233 66543
No 377
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.48 E-value=0.0081 Score=52.48 Aligned_cols=25 Identities=12% Similarity=-0.121 Sum_probs=21.9
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCc
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDL 48 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~ 48 (115)
++|++||.|+|||++|.-+|+.++.
T Consensus 37 a~Lf~Gp~G~GKTT~ArilAk~LnC 61 (491)
T PRK14964 37 SILLVGASGVGKTTCARIISLCLNC 61 (491)
T ss_pred eEEEECCCCccHHHHHHHHHHHHcC
Confidence 4559999999999999999998754
No 378
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=95.47 E-value=0.009 Score=39.67 Aligned_cols=20 Identities=5% Similarity=-0.223 Sum_probs=17.6
Q ss_pred eeccCCCchhHHHHHHhcCC
Q psy7554 27 SCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 27 i~GpTasGKS~lai~LA~~~ 46 (115)
|+|++|||||+|...|....
T Consensus 1 i~G~~gsGKstl~~~l~~~~ 20 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQE 20 (163)
T ss_pred CcCCCCCCHHHHHHHHhCcc
Confidence 58999999999999998763
No 379
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.47 E-value=0.0098 Score=48.22 Aligned_cols=23 Identities=9% Similarity=-0.022 Sum_probs=19.6
Q ss_pred eeeeeccCCCchhHHHHHHhcCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~ 46 (115)
+++|.||+|+|||.++..+++.+
T Consensus 57 ~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 57 NVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 34579999999999999998755
No 380
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=95.47 E-value=0.018 Score=49.15 Aligned_cols=36 Identities=11% Similarity=-0.223 Sum_probs=27.6
Q ss_pred cCCCceeEeeeeeeccCCCchhHHHHHHhcCC---CceEeec
Q psy7554 15 TGTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFCRTY 53 (115)
Q Consensus 15 ~~~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI~Is 53 (115)
+=.|.+.+. |+||+|||||+|..-|+.-. .|+|.++
T Consensus 362 ~i~~Ge~i~---IvG~sGsGKSTLlklL~gl~~p~~G~I~i~ 400 (576)
T TIGR02204 362 TVRPGETVA---LVGPSGAGKSTLFQLLLRFYDPQSGRILLD 400 (576)
T ss_pred EecCCCEEE---EECCCCCCHHHHHHHHHhccCCCCCEEEEC
Confidence 445667666 99999999999999888654 4676454
No 381
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.47 E-value=0.015 Score=49.98 Aligned_cols=31 Identities=6% Similarity=-0.228 Sum_probs=24.4
Q ss_pred eeeeccCCCchhHHHHHHhcCC------CceEeeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP------DLFCRTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~------~~eI~IsaDS 56 (115)
++++||+|||||+++.+||..+ ...+ |++|.
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~~~~g~kV~l-V~~D~ 138 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLL-VACDL 138 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhCCCeEEE-Eeccc
Confidence 4589999999999988888552 2346 99996
No 382
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.47 E-value=0.014 Score=44.36 Aligned_cols=33 Identities=3% Similarity=-0.237 Sum_probs=25.9
Q ss_pred cCCCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 15 TGTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 15 ~~~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
+=.+.+++. |+||.|||||+|..-|+.-+ .|+|
T Consensus 22 ~i~~Ge~~~---l~G~nGsGKSTLl~~l~G~~~p~~G~i 57 (235)
T cd03261 22 DVRRGEILA---IIGPSGSGKSTLLRLIVGLLRPDSGEV 57 (235)
T ss_pred EEcCCCEEE---EECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 345677776 89999999999999998654 4666
No 383
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.46 E-value=0.017 Score=41.37 Aligned_cols=30 Identities=10% Similarity=-0.035 Sum_probs=24.7
Q ss_pred ccCCCceeEeeeeeeccCCCchhHHHHHHhcCC
Q psy7554 14 LTGTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 14 ~~~~~~~~~~~~li~GpTasGKS~lai~LA~~~ 46 (115)
++-.|.+++. |+||+|+|||+|..-|+..+
T Consensus 20 ~~i~~g~~~~---i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 20 LTLKAGEIVA---LVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred EEEcCCCEEE---EECCCCCCHHHHHHHHhCCC
Confidence 4456778877 99999999999999998654
No 384
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.46 E-value=0.0099 Score=54.04 Aligned_cols=27 Identities=11% Similarity=0.007 Sum_probs=23.7
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
++++.||+|+|||.||..+|+..+...
T Consensus 54 slLL~GPpGtGKTTLA~aIA~~~~~~f 80 (725)
T PRK13341 54 SLILYGPPGVGKTTLARIIANHTRAHF 80 (725)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 678899999999999999998887643
No 385
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=95.46 E-value=0.013 Score=39.66 Aligned_cols=21 Identities=5% Similarity=-0.167 Sum_probs=18.4
Q ss_pred eeeeccCCCchhHHHHHHhcC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~ 45 (115)
+.|+||.++|||+|...|...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 467999999999999999765
No 386
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.45 E-value=0.014 Score=44.00 Aligned_cols=31 Identities=3% Similarity=-0.284 Sum_probs=25.3
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+.+++. |+||.|||||+|..-||.-. .|+|
T Consensus 34 ~~Ge~~~---i~G~nGsGKSTLl~~i~Gl~~p~~G~i 67 (228)
T PRK10584 34 KRGETIA---LIGESGSGKSTLLAILAGLDDGSSGEV 67 (228)
T ss_pred cCCCEEE---EECCCCCCHHHHHHHHHcCCCCCCeeE
Confidence 5677777 99999999999999998654 4666
No 387
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.45 E-value=0.013 Score=47.06 Aligned_cols=24 Identities=13% Similarity=0.029 Sum_probs=18.9
Q ss_pred eeeeccCCCchhHHHHHHhcCCCc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDL 48 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~ 48 (115)
+|++||+|+|||.+....=+.++.
T Consensus 36 vLl~G~~GtGKT~li~~~l~~l~~ 59 (272)
T PF12775_consen 36 VLLVGPSGTGKTSLIQNFLSSLDS 59 (272)
T ss_dssp EEEESSTTSSHHHHHHHHHHCSTT
T ss_pred EEEECCCCCchhHHHHhhhccCCc
Confidence 456999999999998776666543
No 388
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.45 E-value=0.0085 Score=46.61 Aligned_cols=24 Identities=4% Similarity=-0.011 Sum_probs=20.9
Q ss_pred eeeeeeccCCCchhHHHHHHhcCC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~ 46 (115)
+.++|+|+.|||||++..++|+.+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 467899999999999999999654
No 389
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.44 E-value=0.014 Score=43.49 Aligned_cols=31 Identities=3% Similarity=-0.165 Sum_probs=24.9
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.|.+++. |+||.|||||+|..-||.-. .|+|
T Consensus 24 ~~G~~~~---i~G~nGsGKSTLl~~l~G~~~~~~G~i 57 (210)
T cd03269 24 EKGEIFG---LLGPNGAGKTTTIRMILGIILPDSGEV 57 (210)
T ss_pred cCCcEEE---EECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 4677776 89999999999999998643 4665
No 390
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.44 E-value=0.01 Score=55.62 Aligned_cols=29 Identities=14% Similarity=0.012 Sum_probs=24.7
Q ss_pred eEeeeeeeccCCCchhHHHHHHhcCCCce
Q psy7554 21 VYLSYLSCLPDSVCPHAHQVDLTDGPDLF 49 (115)
Q Consensus 21 ~~~~~li~GpTasGKS~lai~LA~~~~~e 49 (115)
+--.+|++||.|+|||.+|..+|+.++++
T Consensus 37 l~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 37 LHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 33445699999999999999999999875
No 391
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.44 E-value=0.015 Score=43.91 Aligned_cols=29 Identities=7% Similarity=-0.170 Sum_probs=23.7
Q ss_pred cCCCceeEeeeeeeccCCCchhHHHHHHhcCC
Q psy7554 15 TGTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 15 ~~~~~~~~~~~li~GpTasGKS~lai~LA~~~ 46 (115)
+=.+.+++. |+||.|||||+|..-|+.-.
T Consensus 22 ~i~~Ge~~~---i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 22 DIPKGEITA---LIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEcCCCEEE---EECCCCCCHHHHHHHHHhhc
Confidence 335777777 89999999999998888654
No 392
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=95.43 E-value=0.015 Score=41.33 Aligned_cols=25 Identities=8% Similarity=0.042 Sum_probs=21.3
Q ss_pred eEeeeeeeccCCCchhHHHHHHhcC
Q psy7554 21 VYLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 21 ~~~~~li~GpTasGKS~lai~LA~~ 45 (115)
.++-++++|+.++|||+|..++...
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~ 26 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSED 26 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhC
Confidence 3456889999999999999999854
No 393
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.43 E-value=0.008 Score=44.35 Aligned_cols=22 Identities=9% Similarity=-0.079 Sum_probs=18.6
Q ss_pred eeeeccCCCchhHHHHHHhcCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~ 46 (115)
+.|+|++|||||+|+.+|++.+
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999988888754
No 394
>PHA02624 large T antigen; Provisional
Probab=95.42 E-value=0.013 Score=53.10 Aligned_cols=47 Identities=17% Similarity=0.006 Sum_probs=35.6
Q ss_pred eccCCCceeEeeeeeeccCCCchhHHHHHHhcCCCceEeecc----ceeeeccC
Q psy7554 13 LLTGTPDQVYLSYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQ----VYLMVYKG 62 (115)
Q Consensus 13 ~~~~~~~~~~~~~li~GpTasGKS~lai~LA~~~~~eI~Isa----DSmQVYkg 62 (115)
++.|.|+.=++ ++.||-+||||.|+..|++.++|.+ +|+ |..|+.-+
T Consensus 424 ~l~giPKk~~i--l~~GPpnTGKTtf~~sLl~~L~G~v-lsVNsPt~ks~FwL~ 474 (647)
T PHA02624 424 IVENVPKRRYW--LFKGPVNSGKTTLAAALLDLCGGKS-LNVNCPPDKLNFELG 474 (647)
T ss_pred HHhcCCCCeEE--EEECCCCCCHHHHHHHHHHHcCCeE-EEeeCCcchhHHHhh
Confidence 46777774333 5899999999999999999998888 665 44554433
No 395
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.42 E-value=0.014 Score=43.55 Aligned_cols=32 Identities=3% Similarity=-0.287 Sum_probs=25.6
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
=.+.+++. |+||.|||||+|..-||.-. .|+|
T Consensus 23 i~~Ge~~~---i~G~nGsGKSTLl~~l~Gl~~p~~G~i 57 (205)
T cd03226 23 LYAGEIIA---LTGKNGAGKTTLAKILAGLIKESSGSI 57 (205)
T ss_pred EcCCCEEE---EECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 35777777 89999999999999998654 4666
No 396
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.41 E-value=0.012 Score=46.81 Aligned_cols=31 Identities=13% Similarity=0.107 Sum_probs=25.3
Q ss_pred cCCCceeEeeeeeeccCCCchhHHHHHHhcCCCc
Q psy7554 15 TGTPDQVYLSYLSCLPDSVCPHAHQVDLTDGPDL 48 (115)
Q Consensus 15 ~~~~~~~~~~~li~GpTasGKS~lai~LA~~~~~ 48 (115)
.|.....|| +.||.|+|||.+|..+|+.+.+
T Consensus 32 ~~~~~~~~L---l~G~~G~GKt~~a~~la~~l~~ 62 (355)
T TIGR02397 32 NGRIAHAYL---FSGPRGTGKTSIARIFAKALNC 62 (355)
T ss_pred cCCCCeEEE---EECCCCCCHHHHHHHHHHHhcC
Confidence 455555555 9999999999999999988754
No 397
>PLN02796 D-glycerate 3-kinase
Probab=95.41 E-value=0.012 Score=49.50 Aligned_cols=33 Identities=6% Similarity=-0.221 Sum_probs=26.2
Q ss_pred eeeeccCCCchhHHHHHHhcCCC-----ceEeeccceee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD-----LFCRTYQVYLM 58 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~-----~eI~IsaDSmQ 58 (115)
+-|+||+|||||+|+..|+..+. ... |+.|..-
T Consensus 103 IGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~-IsiDdfY 140 (347)
T PLN02796 103 IGISAPQGCGKTTLVFALVYLFNATGRRAAS-LSIDDFY 140 (347)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcccCCceeE-EEECCcc
Confidence 56899999999999999987664 234 7888754
No 398
>CHL00176 ftsH cell division protein; Validated
Probab=95.41 E-value=0.011 Score=52.88 Aligned_cols=32 Identities=6% Similarity=-0.124 Sum_probs=26.7
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
++|+.||+|+|||.||..+|...+... ++.+.
T Consensus 218 gVLL~GPpGTGKT~LAralA~e~~~p~-i~is~ 249 (638)
T CHL00176 218 GVLLVGPPGTGKTLLAKAIAGEAEVPF-FSISG 249 (638)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCe-eeccH
Confidence 466799999999999999999988776 55543
No 399
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=95.40 E-value=0.011 Score=47.24 Aligned_cols=19 Identities=5% Similarity=-0.059 Sum_probs=15.5
Q ss_pred eeeeccCCCchhHHHHHHh
Q psy7554 25 YLSCLPDSVCPHAHQVDLT 43 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA 43 (115)
++|.+|||||||..+...+
T Consensus 2 vvi~apTGsGKT~~~~~~~ 20 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWA 20 (358)
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 4689999999998766655
No 400
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.40 E-value=0.015 Score=43.51 Aligned_cols=31 Identities=3% Similarity=-0.239 Sum_probs=24.8
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+.+++. |+||.|||||+|..-|+.-. .|+|
T Consensus 27 ~~Ge~~~---i~G~nGsGKSTLl~~l~Gl~~~~~G~i 60 (216)
T TIGR00960 27 TKGEMVF---LVGHSGAGKSTFLKLILGIEKPTRGKI 60 (216)
T ss_pred cCCCEEE---EECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 4667776 89999999999999998654 4665
No 401
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=95.40 E-value=0.021 Score=43.28 Aligned_cols=34 Identities=12% Similarity=0.156 Sum_probs=24.9
Q ss_pred eeeeeccCCCceeEeeeeeeccCCCchhHHHHHHhcC
Q psy7554 9 YQVNLLTGTPDQVYLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 9 ~~~~~~~~~~~~~~~~~li~GpTasGKS~lai~LA~~ 45 (115)
-.+++--+.+++++. |.||+|||||.|.-.|+-.
T Consensus 18 ~~i~~~~~~~~~~~~---i~G~NGsGKSTll~~i~~~ 51 (213)
T cd03279 18 QVIDFTGLDNNGLFL---ICGPTGAGKSTILDAITYA 51 (213)
T ss_pred eEEeCCCCCccCEEE---EECCCCCCHHHHHHHheee
Confidence 345544455567776 9999999999998877743
No 402
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=95.39 E-value=0.019 Score=42.56 Aligned_cols=23 Identities=13% Similarity=0.095 Sum_probs=20.6
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+-++++|+.+||||+|...+...
T Consensus 7 ~kivvvG~~~vGKTsli~~l~~~ 29 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFADN 29 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999864
No 403
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.39 E-value=0.015 Score=44.47 Aligned_cols=32 Identities=6% Similarity=-0.205 Sum_probs=25.5
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
=.+.+++. |+||.|||||+|..-||.-. .|+|
T Consensus 25 i~~Ge~~~---i~G~nGsGKSTLl~~l~G~~~~~~G~i 59 (242)
T PRK11124 25 CPQGETLV---LLGPSGAGKSSLLRVLNLLEMPRSGTL 59 (242)
T ss_pred EcCCCEEE---EECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 35677777 89999999999999998653 4555
No 404
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=95.39 E-value=0.014 Score=40.76 Aligned_cols=21 Identities=14% Similarity=0.167 Sum_probs=18.4
Q ss_pred eeeeccCCCchhHHHHHHhcC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~ 45 (115)
++++|+.+||||+|..++...
T Consensus 3 i~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678999999999999999753
No 405
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=95.38 E-value=0.014 Score=41.24 Aligned_cols=23 Identities=0% Similarity=-0.078 Sum_probs=19.8
Q ss_pred eeeeeccCCCchhHHHHHHhcCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~ 46 (115)
.++|+|+.+||||+|...+....
T Consensus 3 ki~iiG~~~~GKTsl~~~~~~~~ 25 (175)
T cd01870 3 KLVIVGDGACGKTCLLIVFSKDQ 25 (175)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36789999999999999999753
No 406
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.37 E-value=0.015 Score=43.81 Aligned_cols=31 Identities=3% Similarity=-0.209 Sum_probs=24.9
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+.+++. |+||.|||||+|..-|+.-. .|.|
T Consensus 28 ~~G~~~~---i~G~nGsGKSTLl~~l~Gl~~~~~G~i 61 (220)
T cd03293 28 EEGEFVA---LVGPSGCGKSTLLRIIAGLERPTSGEV 61 (220)
T ss_pred eCCcEEE---EECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 4667776 89999999999999998653 4665
No 407
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.37 E-value=0.0096 Score=53.28 Aligned_cols=31 Identities=13% Similarity=0.008 Sum_probs=26.1
Q ss_pred ceeEeeeeeeccCCCchhHHHHHHhcCCCce
Q psy7554 19 DQVYLSYLSCLPDSVCPHAHQVDLTDGPDLF 49 (115)
Q Consensus 19 ~~~~~~~li~GpTasGKS~lai~LA~~~~~e 49 (115)
+.+--++|+.||.|+|||.+|..+|+.++++
T Consensus 35 ~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 35 DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred CCCCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3454567799999999999999999999874
No 408
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=95.37 E-value=0.015 Score=40.19 Aligned_cols=20 Identities=10% Similarity=-0.006 Sum_probs=17.8
Q ss_pred eeeeccCCCchhHHHHHHhc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~ 44 (115)
++++|+++||||+|...+..
T Consensus 3 i~~~G~~~~GKTsl~~~l~~ 22 (164)
T cd04139 3 VIVVGAGGVGKSALTLQFMY 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 57899999999999999874
No 409
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.36 E-value=0.064 Score=42.76 Aligned_cols=63 Identities=16% Similarity=0.142 Sum_probs=40.1
Q ss_pred eeccCCCchhHHHHHHhc---CCCceEeeccceeeeccCCceecCCCCHHHhcCCCeeeecccCCC----CccCHHHHHH
Q psy7554 27 SCLPDSVCPHAHQVDLTD---GPDLFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLLDFLDPN----TRFTVVDYRN 99 (115)
Q Consensus 27 i~GpTasGKS~lai~LA~---~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLid~ldp~----e~ySv~~F~~ 99 (115)
|+||+|||||+|---|+- --.|.+ .+.|-|+ .+.+.+++...+-.-++++-.+ ..+||.+...
T Consensus 36 I~GpSGSGKSTLLniig~ld~pt~G~v--------~i~g~d~--~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~ 105 (226)
T COG1136 36 IVGPSGSGKSTLLNLLGGLDKPTSGEV--------LINGKDL--TKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVE 105 (226)
T ss_pred EECCCCCCHHHHHHHHhcccCCCCceE--------EECCEEc--CcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHH
Confidence 799999999999665542 223444 2233222 2335667776776777777655 6677777776
No 410
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.35 E-value=0.016 Score=44.02 Aligned_cols=32 Identities=6% Similarity=-0.222 Sum_probs=25.0
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
=.|.+++. |+||.|||||+|..-|+.-. .|+|
T Consensus 30 i~~Ge~~~---i~G~nGsGKSTLl~~l~G~~~~~~G~i 64 (225)
T PRK10247 30 LRAGEFKL---ITGPSGCGKSTLLKIVASLISPTSGTL 64 (225)
T ss_pred EcCCCEEE---EECCCCCCHHHHHHHHhcccCCCCCeE
Confidence 34677776 99999999999999888533 4666
No 411
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.35 E-value=0.011 Score=54.01 Aligned_cols=25 Identities=16% Similarity=-0.000 Sum_probs=22.4
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCc
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDL 48 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~ 48 (115)
++|++||.|+|||.+|..+|+.+++
T Consensus 39 AyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4459999999999999999999875
No 412
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=95.35 E-value=0.044 Score=44.84 Aligned_cols=27 Identities=4% Similarity=-0.197 Sum_probs=22.9
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~ 46 (115)
.+.+++. |+|++|||||+|+.-|+.-+
T Consensus 40 ~~Ge~~~---ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 40 RAGETLG---IVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred cCCCEEE---EECCCCchHHHHHHHHHcCC
Confidence 4667776 89999999999999998654
No 413
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=95.35 E-value=0.018 Score=44.74 Aligned_cols=63 Identities=10% Similarity=-0.192 Sum_probs=45.6
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccce--eeeccCCceecCCCCHHHhcCCCeeeecccCCCCccCHHH
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY--LMVYKGLDVITNKVTPEEAEGIPHHLLDFLDPNTRFTVVD 96 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDS--mQVYkgldIgTAKPs~eE~~~IpHHLid~ldp~e~ySv~~ 96 (115)
|-++|-.|||||++|--+++ +|..+ |+||. .|+|..- ++.-...+.|...++++.+..++...
T Consensus 5 IglTG~igsGKStva~~~~~-~G~~v-idaD~v~r~~~~~~-------~~~~~~i~~~fG~~i~~~dg~~~r~~ 69 (201)
T COG0237 5 IGLTGGIGSGKSTVAKILAE-LGFPV-IDADDVAREVVEPG-------GEALQEIAERFGLEILDEDGGLDRRK 69 (201)
T ss_pred EEEecCCCCCHHHHHHHHHH-cCCeE-EEccHHHHHHHhcc-------chHHHHHHHHcCCcccCCCchhHHHH
Confidence 45799999999999999998 88899 99995 5777653 22223345677777777665555443
No 414
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=95.34 E-value=0.022 Score=48.91 Aligned_cols=33 Identities=9% Similarity=-0.218 Sum_probs=25.3
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceEee
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFCRT 52 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI~I 52 (115)
.|++.+- |+||||||||+|+.-|.+-+ .|+|.|
T Consensus 353 ~~Ge~va---iVG~sGsGKSTl~~LL~r~~~~~~G~I~i 388 (567)
T COG1132 353 EPGEKVA---IVGPSGSGKSTLIKLLLRLYDPTSGEILI 388 (567)
T ss_pred cCCCEEE---EECCCCCCHHHHHHHHhccCCCCCCeEEE
Confidence 4556665 79999999999998888655 467744
No 415
>PRK13768 GTPase; Provisional
Probab=95.34 E-value=0.02 Score=45.16 Aligned_cols=33 Identities=9% Similarity=-0.197 Sum_probs=24.8
Q ss_pred eeeeeccCCCchhHHHHHHhcCC-----CceEeecccee
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGP-----DLFCRTYQVYL 57 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~-----~~eI~IsaDSm 57 (115)
.+++.||.|||||+++..++..+ +..+ |+.|.-
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~-i~~D~~ 41 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAI-VNLDPA 41 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEE-EECCCc
Confidence 36789999999999888777543 3445 888863
No 416
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.34 E-value=0.016 Score=43.26 Aligned_cols=31 Identities=6% Similarity=-0.144 Sum_probs=24.8
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+.+++. |+||.|||||+|..-|+.-+ .|+|
T Consensus 26 ~~G~~~~---l~G~nGsGKSTLl~~i~Gl~~~~~G~i 59 (214)
T TIGR02673 26 RKGEFLF---LTGPSGAGKTTLLKLLYGALTPSRGQV 59 (214)
T ss_pred cCCCEEE---EECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 4667766 89999999999999888653 4666
No 417
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=95.33 E-value=0.018 Score=40.41 Aligned_cols=23 Identities=9% Similarity=-0.057 Sum_probs=20.2
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+-++++|+.+||||+|..++..+
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~ 26 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRN 26 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999744
No 418
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.33 E-value=0.016 Score=44.47 Aligned_cols=28 Identities=0% Similarity=-0.210 Sum_probs=23.4
Q ss_pred cCCCceeEeeeeeeccCCCchhHHHHHHhcC
Q psy7554 15 TGTPDQVYLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 15 ~~~~~~~~~~~li~GpTasGKS~lai~LA~~ 45 (115)
+=.|.+++. |+||+|||||+|..-||.-
T Consensus 24 ~i~~Ge~~~---i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 24 QIEQNKITA---LIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred EEcCCCEEE---EECCCCCCHHHHHHHHhcc
Confidence 335778877 9999999999999999854
No 419
>PRK10908 cell division protein FtsE; Provisional
Probab=95.32 E-value=0.017 Score=43.55 Aligned_cols=33 Identities=3% Similarity=-0.233 Sum_probs=26.0
Q ss_pred cCCCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 15 TGTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 15 ~~~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
+=.+.+++. |+||.|||||+|..-|+... .|+|
T Consensus 24 ~i~~Ge~~~---i~G~nGsGKSTLl~~l~G~~~~~~G~i 59 (222)
T PRK10908 24 HMRPGEMAF---LTGHSGAGKSTLLKLICGIERPSAGKI 59 (222)
T ss_pred EEcCCCEEE---EECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 335777777 89999999999999998654 3555
No 420
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.32 E-value=0.017 Score=42.82 Aligned_cols=31 Identities=3% Similarity=-0.257 Sum_probs=24.6
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+.+++. |+||.|+|||+|..-||.-+ .|+|
T Consensus 22 ~~Ge~~~---i~G~nGsGKSTLl~~l~G~~~~~~G~i 55 (206)
T TIGR03608 22 EKGKMYA---IIGESGSGKSTLLNIIGLLEKFDSGQV 55 (206)
T ss_pred eCCcEEE---EECCCCCCHHHHHHHHhcCCCCCCeEE
Confidence 4667766 89999999999999998654 4655
No 421
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=95.32 E-value=0.016 Score=39.74 Aligned_cols=21 Identities=14% Similarity=0.137 Sum_probs=18.2
Q ss_pred eeeeccCCCchhHHHHHHhcC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~ 45 (115)
++|+||.+||||.|.-.+...
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678999999999999888643
No 422
>KOG3354|consensus
Probab=95.31 E-value=0.011 Score=46.15 Aligned_cols=32 Identities=9% Similarity=-0.158 Sum_probs=27.1
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
++++|+.|||||+++-.|+++++..- +-+|-.
T Consensus 15 i~vmGvsGsGKSTigk~L~~~l~~~F-~dgDd~ 46 (191)
T KOG3354|consen 15 IVVMGVSGSGKSTIGKALSEELGLKF-IDGDDL 46 (191)
T ss_pred EEEEecCCCChhhHHHHHHHHhCCcc-cccccC
Confidence 34699999999999999999999877 666643
No 423
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.30 E-value=0.016 Score=44.27 Aligned_cols=32 Identities=3% Similarity=-0.242 Sum_probs=25.4
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
=.+.+++. |+||.|||||+|..-|+.-. .|+|
T Consensus 25 i~~Ge~~~---i~G~nGsGKSTLl~~l~Gl~~~~~G~i 59 (239)
T cd03296 25 IPSGELVA---LLGPSGSGKTTLLRLIAGLERPDSGTI 59 (239)
T ss_pred EcCCCEEE---EECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 35677777 89999999999999998654 4665
No 424
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.30 E-value=0.0081 Score=51.39 Aligned_cols=44 Identities=11% Similarity=-0.037 Sum_probs=30.1
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHhcCC-----CceEeeccceeeeccC
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLTDGP-----DLFCRTYQVYLMVYKG 62 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA~~~-----~~eI~IsaDSmQVYkg 62 (115)
|...|..++|.|++|+|||.|+..++..+ +..+ +...+.++.+.
T Consensus 137 ~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v-~yv~~~~f~~~ 185 (450)
T PRK14087 137 PGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKV-SYMSGDEFARK 185 (450)
T ss_pred cCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeE-EEEEHHHHHHH
Confidence 44567788899999999999998887632 3444 44444444444
No 425
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=95.30 E-value=0.028 Score=43.44 Aligned_cols=27 Identities=4% Similarity=-0.287 Sum_probs=22.1
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhcC
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~~ 45 (115)
=.|.+++. |+||.|+|||+|..-|+.-
T Consensus 26 i~~Ge~~~---l~G~nGsGKSTLl~~l~Gl 52 (254)
T PRK10418 26 LQRGRVLA---LVGGSGSGKSLTCAAALGI 52 (254)
T ss_pred EcCCCEEE---EECCCCCCHHHHHHHHhCC
Confidence 34666666 8999999999999988854
No 426
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=95.29 E-value=0.018 Score=42.76 Aligned_cols=31 Identities=6% Similarity=-0.136 Sum_probs=25.3
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+.++|. |+||.|||||+|..-|+... .|+|
T Consensus 24 ~~Ge~~~---i~G~nGsGKSTLl~~l~G~~~~~~G~i 57 (198)
T TIGR01189 24 NAGEALQ---VTGPNGIGKTTLLRILAGLLRPDSGEV 57 (198)
T ss_pred cCCcEEE---EECCCCCCHHHHHHHHhCCCCCCccEE
Confidence 4677777 89999999999999888654 4666
No 427
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.29 E-value=0.018 Score=43.20 Aligned_cols=31 Identities=6% Similarity=-0.151 Sum_probs=24.9
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+.+++. |+||.|||||+|..-|+.-. .|+|
T Consensus 26 ~~Ge~~~---i~G~nGsGKSTLl~~l~Gl~~~~~G~i 59 (220)
T cd03263 26 YKGEIFG---LLGHNGAGKTTTLKMLTGELRPTSGTA 59 (220)
T ss_pred cCCcEEE---EECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 4667766 89999999999999998543 4666
No 428
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.29 E-value=0.011 Score=51.59 Aligned_cols=25 Identities=12% Similarity=-0.250 Sum_probs=21.7
Q ss_pred eeeeccCCCchhHHHHHHhcCCCce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLF 49 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~e 49 (115)
+++.||+|+|||.+|..||+.+.++
T Consensus 197 iil~GppGtGKT~lA~~la~~l~~~ 221 (459)
T PRK11331 197 IILQGPPGVGKTFVARRLAYLLTGE 221 (459)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4459999999999999999988663
No 429
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.29 E-value=0.015 Score=44.91 Aligned_cols=20 Identities=5% Similarity=-0.230 Sum_probs=17.1
Q ss_pred eeeeccCCCchhHHHHHHhc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~ 44 (115)
++|.||+|||||.||.+++.
T Consensus 24 ~lI~G~pGsGKT~la~~~l~ 43 (237)
T TIGR03877 24 VLLSGGPGTGKSIFSQQFLW 43 (237)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 44999999999999988664
No 430
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=95.29 E-value=0.013 Score=47.95 Aligned_cols=27 Identities=7% Similarity=-0.200 Sum_probs=23.0
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
-++|+|+.|||||.|+..|++.++..+
T Consensus 164 ~~~~~G~~~~gkstl~~~l~~~~~~~~ 190 (325)
T TIGR01526 164 TVAILGGESTGKSTLVNKLAAVFNTTS 190 (325)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCCE
Confidence 456899999999999999998876544
No 431
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=95.29 E-value=0.016 Score=45.67 Aligned_cols=29 Identities=10% Similarity=-0.087 Sum_probs=23.0
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
++|+|+.|+|||.+|..|+. ...+ ++.|.
T Consensus 15 ~liyG~~G~GKtt~a~~~~~--~~~~-~~~d~ 43 (220)
T TIGR01618 15 YLIYGKPGTGKTSTIKYLPG--KTLV-LSFDM 43 (220)
T ss_pred EEEECCCCCCHHHHHHhcCC--CCEE-Eeccc
Confidence 56899999999999999962 2445 77775
No 432
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.29 E-value=0.0094 Score=48.69 Aligned_cols=23 Identities=4% Similarity=-0.203 Sum_probs=18.7
Q ss_pred eeeeeccCCCchhHHHHHHhcCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~ 46 (115)
.+++.||+|+|||.|+..+|..+
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l 180 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANEL 180 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 34459999999999988888654
No 433
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=95.27 E-value=0.021 Score=40.14 Aligned_cols=23 Identities=13% Similarity=0.078 Sum_probs=19.8
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
.-++++|+.+||||+|..++..+
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~ 25 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADD 25 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999999753
No 434
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.26 E-value=0.018 Score=42.84 Aligned_cols=31 Identities=6% Similarity=-0.148 Sum_probs=25.0
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+.+++. |+||.|||||+|..-|+.-. .|+|
T Consensus 24 ~~G~~~~---i~G~nGsGKSTLl~~l~Gl~~~~~G~i 57 (208)
T cd03268 24 KKGEIYG---FLGPNGAGKTTTMKIILGLIKPDSGEI 57 (208)
T ss_pred cCCcEEE---EECCCCCCHHHHHHHHhCCcCCCceEE
Confidence 4667776 89999999999999988543 4666
No 435
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.26 E-value=0.018 Score=42.06 Aligned_cols=31 Identities=6% Similarity=-0.160 Sum_probs=24.0
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+.+++. |+||.|||||+|..-||... .|.|
T Consensus 26 ~~Ge~~~---i~G~nGsGKStLl~~l~G~~~~~~G~i 59 (173)
T cd03246 26 EPGESLA---IIGPSGSGKSTLARLILGLLRPTSGRV 59 (173)
T ss_pred CCCCEEE---EECCCCCCHHHHHHHHHhccCCCCCeE
Confidence 3556665 89999999999999998643 4655
No 436
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.26 E-value=0.025 Score=42.19 Aligned_cols=24 Identities=8% Similarity=-0.213 Sum_probs=20.2
Q ss_pred eeccCCCchhHHHHHHhcCC---CceE
Q psy7554 27 SCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 27 i~GpTasGKS~lai~LA~~~---~~eI 50 (115)
|+||.|||||+|..-|+.-+ .|+|
T Consensus 30 i~G~nGsGKSTLl~~l~Gl~~~~~G~i 56 (211)
T cd03264 30 LLGPNGAGKTTLMRILATLTPPSSGTI 56 (211)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCccEE
Confidence 89999999999999998543 4666
No 437
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.26 E-value=0.012 Score=53.64 Aligned_cols=27 Identities=15% Similarity=-0.033 Sum_probs=23.5
Q ss_pred eeeeeeccCCCchhHHHHHHhcCCCce
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGPDLF 49 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~~~e 49 (115)
-++|++||.|+|||.+|..||+.++++
T Consensus 39 Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 345699999999999999999998764
No 438
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.26 E-value=0.011 Score=53.08 Aligned_cols=26 Identities=8% Similarity=0.073 Sum_probs=22.8
Q ss_pred eeeeeeccCCCchhHHHHHHhcCCCc
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGPDL 48 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~~~ 48 (115)
-++|+.||.|+|||.+|..+|+.+++
T Consensus 39 hA~Lf~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45669999999999999999998864
No 439
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=95.26 E-value=0.016 Score=40.50 Aligned_cols=21 Identities=10% Similarity=-0.134 Sum_probs=18.5
Q ss_pred eeeeeccCCCchhHHHHHHhc
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~ 44 (115)
-++++|+++||||+|...+..
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~ 22 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHS 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 467899999999999998864
No 440
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.26 E-value=0.017 Score=43.56 Aligned_cols=33 Identities=3% Similarity=-0.210 Sum_probs=26.0
Q ss_pred cCCCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 15 TGTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 15 ~~~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
+-.|.+++. |+||.|||||+|..-||.-. .|+|
T Consensus 22 ~i~~Ge~~~---l~G~nGsGKSTLl~~l~Gl~~p~~G~i 57 (232)
T cd03218 22 SVKQGEIVG---LLGPNGAGKTTTFYMIVGLVKPDSGKI 57 (232)
T ss_pred EecCCcEEE---EECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 345777777 89999999999999998543 4666
No 441
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=95.25 E-value=0.017 Score=40.83 Aligned_cols=22 Identities=14% Similarity=-0.055 Sum_probs=19.5
Q ss_pred eeeeeccCCCchhHHHHHHhcC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~ 45 (115)
-++|+||.|||||+|...+...
T Consensus 16 ~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 16 RILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred EEEEEccCCCCHHHHHHHHhcC
Confidence 3678999999999999999875
No 442
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.25 E-value=0.027 Score=44.06 Aligned_cols=39 Identities=10% Similarity=0.021 Sum_probs=29.9
Q ss_pred eeeeeccC--CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 9 YQVNLLTG--TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 9 ~~~~~~~~--~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
+.++...| .+.+++. |+||.|||||+|..-||.-. .|+|
T Consensus 13 ~~l~~~~~~i~~Ge~~~---i~G~NGsGKSTLlk~L~G~~~p~~G~i 56 (246)
T cd03237 13 FTLEVEGGSISESEVIG---ILGPNGIGKTTFIKMLAGVLKPDEGDI 56 (246)
T ss_pred EEEEEecCCcCCCCEEE---EECCCCCCHHHHHHHHhCCCcCCCCeE
Confidence 45556555 5778877 89999999999999998654 3655
No 443
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=95.25 E-value=0.015 Score=50.84 Aligned_cols=34 Identities=6% Similarity=-0.221 Sum_probs=30.5
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
-.+||| +|.-|||||+++..||++++-.. |-.|.
T Consensus 6 ~~~i~L----iG~~GaGKttvg~~LA~~L~~~f-iD~D~ 39 (542)
T PRK14021 6 RPQAVI----IGMMGAGKTRVGKEVAQMMRLPF-ADADV 39 (542)
T ss_pred CccEEE----ECCCCCCHHHHHHHHHHHhCCCE-EEchH
Confidence 356777 99999999999999999999999 88886
No 444
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.25 E-value=0.019 Score=43.11 Aligned_cols=33 Identities=3% Similarity=-0.295 Sum_probs=25.9
Q ss_pred cCCCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 15 TGTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 15 ~~~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
+=.|.+++. |+||.|||||+|..-||... .|+|
T Consensus 27 ~i~~G~~~~---i~G~nGsGKSTLl~~i~G~~~~~~G~i 62 (221)
T TIGR02211 27 SIGKGEIVA---IVGSSGSGKSTLLHLLGGLDNPTSGEV 62 (221)
T ss_pred EEcCCcEEE---EECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 335677776 89999999999999998654 4665
No 445
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=95.24 E-value=0.095 Score=40.17 Aligned_cols=26 Identities=15% Similarity=-0.006 Sum_probs=22.3
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhc
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~ 44 (115)
=.|.+++. |+||.|||||+|..-|+-
T Consensus 26 i~~Ge~~~---i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14240 26 IEENQVTA---LIGPSGCGKSTFLRTLNR 51 (250)
T ss_pred EcCCCEEE---EECCCCCCHHHHHHHHhc
Confidence 35777776 899999999999999985
No 446
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=95.24 E-value=0.017 Score=40.78 Aligned_cols=22 Identities=5% Similarity=-0.013 Sum_probs=19.2
Q ss_pred eeeeeccCCCchhHHHHHHhcC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~ 45 (115)
.++++|+.++|||+|...+..+
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~ 23 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYAND 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4788999999999999988754
No 447
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.23 E-value=0.019 Score=43.04 Aligned_cols=31 Identities=3% Similarity=-0.369 Sum_probs=25.3
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+.+++. |+||.|||||+|..-|+... .|+|
T Consensus 28 ~~G~~~~---i~G~nGsGKSTLl~~i~G~~~~~~G~i 61 (220)
T cd03245 28 RAGEKVA---IIGRVGSGKSTLLKLLAGLYKPTSGSV 61 (220)
T ss_pred cCCCEEE---EECCCCCCHHHHHHHHhcCcCCCCCeE
Confidence 5777777 89999999999999888653 4666
No 448
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=95.22 E-value=0.1 Score=40.89 Aligned_cols=26 Identities=8% Similarity=-0.106 Sum_probs=22.4
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcC
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~ 45 (115)
.|.+++. |+||.|||||+|..-||.-
T Consensus 49 ~~Ge~~~---I~G~nGsGKSTLl~~laGl 74 (272)
T PRK14236 49 PKNRVTA---FIGPSGCGKSTLLRCFNRM 74 (272)
T ss_pred cCCCEEE---EECCCCCCHHHHHHHHHhc
Confidence 4677777 9999999999999999855
No 449
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.21 E-value=0.017 Score=43.18 Aligned_cols=33 Identities=6% Similarity=-0.113 Sum_probs=26.1
Q ss_pred cCCCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 15 TGTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 15 ~~~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
+=.+.+++. |+||.|||||+|..-|+.-. .|+|
T Consensus 21 ~i~~Ge~~~---l~G~nGsGKSTLl~~l~G~~~p~~G~i 56 (213)
T cd03235 21 EVKPGEFLA---IVGPNGAGKSTLLKAILGLLKPTSGSI 56 (213)
T ss_pred EEcCCCEEE---EECCCCCCHHHHHHHHcCCCCCCCCEE
Confidence 335777777 89999999999999988654 4666
No 450
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.21 E-value=0.02 Score=41.86 Aligned_cols=34 Identities=12% Similarity=-0.144 Sum_probs=26.6
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhcCC---CceEee
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFCRT 52 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI~I 52 (115)
=.|.+++. |+||.|||||+|..-|+..+ .|+|.+
T Consensus 24 i~~Ge~~~---i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 60 (166)
T cd03223 24 IKPGDRLL---ITGPSGTGKSSLFRALAGLWPWGSGRIGM 60 (166)
T ss_pred ECCCCEEE---EECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 35777777 99999999999999988664 466633
No 451
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.20 E-value=0.025 Score=42.28 Aligned_cols=35 Identities=11% Similarity=0.001 Sum_probs=25.7
Q ss_pred eeeeeeccCCCchhHHHHHHhcCC---Cc-eEeecccee
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGP---DL-FCRTYQVYL 57 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~---~~-eI~IsaDSm 57 (115)
..+||.|++||||+.+|..+.+.- ++ .|.|||-++
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~ 61 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAAL 61 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhh
Confidence 467889999999999999998643 33 444777544
No 452
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=95.20 E-value=0.089 Score=41.30 Aligned_cols=28 Identities=11% Similarity=-0.104 Sum_probs=22.9
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhcCC
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~~~ 46 (115)
=.+.+++. |+||.|||||+|..-|+.-+
T Consensus 47 i~~Ge~~~---I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 47 IHENEVTA---IIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred EcCCCEEE---EECCCCCCHHHHHHHHHhhc
Confidence 34667776 89999999999999998643
No 453
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.20 E-value=0.018 Score=43.65 Aligned_cols=33 Identities=6% Similarity=-0.161 Sum_probs=25.9
Q ss_pred cCCCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 15 TGTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 15 ~~~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
+=.+.+++. |+||.|||||+|..-|+.-+ .|+|
T Consensus 22 ~i~~Ge~~~---l~G~nGsGKSTLl~~l~Gl~~~~~G~i 57 (236)
T cd03219 22 SVRPGEIHG---LIGPNGAGKTTLFNLISGFLRPTSGSV 57 (236)
T ss_pred EecCCcEEE---EECCCCCCHHHHHHHHcCCCCCCCceE
Confidence 335777776 89999999999999998543 4666
No 454
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.20 E-value=0.019 Score=42.12 Aligned_cols=36 Identities=11% Similarity=-0.082 Sum_probs=26.4
Q ss_pred eeeccCCCchhHHHHHHhcCCCceEeeccce---eeecc
Q psy7554 26 LSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY---LMVYK 61 (115)
Q Consensus 26 li~GpTasGKS~lai~LA~~~~~eI~IsaDS---mQVYk 61 (115)
++.|+-|+|||.|+..+++.++..-.|+.-+ ++.|.
T Consensus 26 ~l~G~lGaGKTtl~~~l~~~lg~~~~v~SPTf~lv~~Y~ 64 (133)
T TIGR00150 26 LLKGDLGAGKTTLVQGLLQGLGIQGNVTSPTFTLVNEYN 64 (133)
T ss_pred EEEcCCCCCHHHHHHHHHHHcCCCCcccCCCeeeeeecc
Confidence 3799999999999999999987532144433 44464
No 455
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.20 E-value=0.018 Score=43.54 Aligned_cols=33 Identities=9% Similarity=-0.223 Sum_probs=26.8
Q ss_pred cCCCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 15 TGTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 15 ~~~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
+=.+.+++. |+||.|||||+|..-||.-. .|+|
T Consensus 22 ~i~~Ge~~~---l~G~nGsGKSTLl~~l~G~~~~~~G~i 57 (230)
T TIGR03410 22 EVPKGEVTC---VLGRNGVGKTTLLKTLMGLLPVKSGSI 57 (230)
T ss_pred EECCCCEEE---EECCCCCCHHHHHHHHhCCCCCCCCEE
Confidence 335778887 99999999999999998554 5776
No 456
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.19 E-value=0.019 Score=42.95 Aligned_cols=31 Identities=6% Similarity=-0.141 Sum_probs=24.5
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+.+++. |+||.|||||+|..-|+.-+ .|+|
T Consensus 24 ~~Ge~~~---i~G~nGsGKSTLl~~l~G~~~p~~G~i 57 (213)
T cd03259 24 EPGEFLA---LLGPSGCGKTTLLRLIAGLERPDSGEI 57 (213)
T ss_pred cCCcEEE---EECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 4667766 89999999999999898643 4555
No 457
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.18 E-value=0.021 Score=46.09 Aligned_cols=26 Identities=19% Similarity=0.040 Sum_probs=23.0
Q ss_pred EeeeeeeccCCCchhHHHHHHhcCCC
Q psy7554 22 YLSYLSCLPDSVCPHAHQVDLTDGPD 47 (115)
Q Consensus 22 ~~~~li~GpTasGKS~lai~LA~~~~ 47 (115)
+.+++|.||+|||||+|...|+..+.
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccC
Confidence 46789999999999999999997763
No 458
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.18 E-value=0.019 Score=44.01 Aligned_cols=31 Identities=10% Similarity=-0.181 Sum_probs=25.3
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+.+++. |+||.|||||+|..-|+.-. .|+|
T Consensus 29 ~~Ge~~~---l~G~nGsGKSTLl~~l~Gl~~~~~G~i 62 (255)
T PRK11300 29 REQEIVS---LIGPNGAGKTTVFNCLTGFYKPTGGTI 62 (255)
T ss_pred cCCeEEE---EECCCCCCHHHHHHHHhCCcCCCcceE
Confidence 4677777 89999999999999998654 4666
No 459
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.18 E-value=0.011 Score=48.69 Aligned_cols=30 Identities=17% Similarity=0.042 Sum_probs=25.3
Q ss_pred ceeEeeeeeeccCCCchhHHHHHHhcCCCc
Q psy7554 19 DQVYLSYLSCLPDSVCPHAHQVDLTDGPDL 48 (115)
Q Consensus 19 ~~~~~~~li~GpTasGKS~lai~LA~~~~~ 48 (115)
+.+--++|+.||.|+||+.+|..+|+.+.+
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC 48 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLC 48 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcC
Confidence 445556779999999999999999998764
No 460
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=95.17 E-value=0.015 Score=40.72 Aligned_cols=21 Identities=14% Similarity=-0.104 Sum_probs=18.3
Q ss_pred eeeeccCCCchhHHHHHHhcC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~ 45 (115)
++++|+.++|||+|...|...
T Consensus 2 i~~vG~~~~GKstLi~~l~~~ 22 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTL 22 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhh
Confidence 678999999999999888654
No 461
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.17 E-value=0.017 Score=45.53 Aligned_cols=32 Identities=9% Similarity=-0.028 Sum_probs=21.8
Q ss_pred eeccCCCchhHHHHHHhcC-----CCceEeeccceeee
Q psy7554 27 SCLPDSVCPHAHQVDLTDG-----PDLFCRTYQVYLMV 59 (115)
Q Consensus 27 i~GpTasGKS~lai~LA~~-----~~~eI~IsaDSmQV 59 (115)
|+||-|||||++...+.+- .+..| ||-|.-.-
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~-vNLDPa~~ 37 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYI-VNLDPAVE 37 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEE-EE--TT-S
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceE-EEcchHhc
Confidence 5899999999999888853 34556 99987554
No 462
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.17 E-value=0.02 Score=43.88 Aligned_cols=26 Identities=15% Similarity=-0.077 Sum_probs=22.5
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcC
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~ 45 (115)
.|.+++. |+||.|||||+|..-|+.-
T Consensus 27 ~~Ge~~~---i~G~nGsGKSTLl~~l~Gl 52 (249)
T PRK14253 27 PARQVTA---LIGPSGCGKSTLLRCLNRM 52 (249)
T ss_pred cCCCEEE---EECCCCCCHHHHHHHHHhh
Confidence 5778887 9999999999999999854
No 463
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.16 E-value=0.02 Score=43.29 Aligned_cols=31 Identities=3% Similarity=-0.263 Sum_probs=25.3
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+.+++. |+||.|||||+|..-||... .|+|
T Consensus 26 ~~Ge~~~---i~G~nGsGKSTLl~~l~Gl~~p~~G~i 59 (234)
T cd03251 26 PAGETVA---LVGPSGSGKSTLVNLIPRFYDVDSGRI 59 (234)
T ss_pred cCCCEEE---EECCCCCCHHHHHHHHhccccCCCCEE
Confidence 4677777 89999999999999888554 4666
No 464
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.15 E-value=0.02 Score=41.16 Aligned_cols=31 Identities=3% Similarity=-0.152 Sum_probs=25.5
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+.+++. |.||.|+|||+|..-|+.-. .|+|
T Consensus 24 ~~Ge~~~---i~G~nGsGKStLl~~l~G~~~~~~G~i 57 (144)
T cd03221 24 NPGDRIG---LVGRNGAGKSTLLKLIAGELEPDEGIV 57 (144)
T ss_pred CCCCEEE---EECCCCCCHHHHHHHHcCCCCCCceEE
Confidence 5777877 89999999999999888654 4666
No 465
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.15 E-value=0.02 Score=43.79 Aligned_cols=31 Identities=10% Similarity=-0.145 Sum_probs=24.6
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+.+++. |+||.|||||+|..-||..+ .|+|
T Consensus 27 ~~Ge~~~---i~G~nGsGKSTLl~~l~G~~~~~~G~i 60 (250)
T PRK11264 27 KPGEVVA---IIGPSGSGKTTLLRCINLLEQPEAGTI 60 (250)
T ss_pred cCCCEEE---EECCCCCCHHHHHHHHhcCCCCCCeEE
Confidence 4667766 89999999999999998654 4665
No 466
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.15 E-value=0.021 Score=42.83 Aligned_cols=31 Identities=6% Similarity=-0.229 Sum_probs=24.9
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+++++. |+||.|||||+|..-||... .|+|
T Consensus 28 ~~Ge~~~---i~G~nGsGKSTLl~~l~G~~~~~~G~i 61 (221)
T cd03244 28 KPGEKVG---IVGRTGSGKSSLLLALFRLVELSSGSI 61 (221)
T ss_pred CCCCEEE---EECCCCCCHHHHHHHHHcCCCCCCCEE
Confidence 4677777 89999999999999888543 4666
No 467
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.15 E-value=0.012 Score=51.34 Aligned_cols=26 Identities=15% Similarity=0.079 Sum_probs=22.4
Q ss_pred eeeeeeccCCCchhHHHHHHhcCCCc
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGPDL 48 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~~~ 48 (115)
-++|++||.|+|||.+|..+|+.++.
T Consensus 37 ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 37 HAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 34569999999999999999998753
No 468
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=95.15 E-value=0.02 Score=43.00 Aligned_cols=33 Identities=3% Similarity=-0.227 Sum_probs=26.2
Q ss_pred cCCCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 15 TGTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 15 ~~~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
+=.+.+++. |.||.|||||+|..-|+.-. .|+|
T Consensus 20 ~i~~Ge~~~---i~G~nGsGKSTLl~~l~G~~~~~~G~i 55 (213)
T TIGR01277 20 NVADGEIVA---IMGPSGAGKSTLLNLIAGFIEPASGSI 55 (213)
T ss_pred EEeCCcEEE---EECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 334777777 89999999999999998654 4666
No 469
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.14 E-value=0.019 Score=43.23 Aligned_cols=35 Identities=9% Similarity=-0.204 Sum_probs=27.0
Q ss_pred cCCCceeEeeeeeeccCCCchhHHHHHHhcCC---CceEee
Q psy7554 15 TGTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFCRT 52 (115)
Q Consensus 15 ~~~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI~I 52 (115)
+=.+.+++. |+||.|||||+|..-||... .|+|.+
T Consensus 25 ~i~~G~~~~---i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 62 (229)
T cd03254 25 SIKPGETVA---IVGPTGAGKTTLINLLMRFYDPQKGQILI 62 (229)
T ss_pred EEcCCCEEE---EECCCCCCHHHHHHHHhcCcCCCCCEEEE
Confidence 345677776 89999999999999998654 466633
No 470
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.13 E-value=0.015 Score=50.87 Aligned_cols=34 Identities=12% Similarity=-0.011 Sum_probs=26.2
Q ss_pred eeEeeeeeeccCCCchhHHHHHHhcCC----C---ceEeecccee
Q psy7554 20 QVYLSYLSCLPDSVCPHAHQVDLTDGP----D---LFCRTYQVYL 57 (115)
Q Consensus 20 ~~~~~~li~GpTasGKS~lai~LA~~~----~---~eI~IsaDSm 57 (115)
+|+. ++||||+|||+++.+||..+ + .-+ |.+|..
T Consensus 257 ~Vi~---LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~L-I~~Dt~ 297 (484)
T PRK06995 257 GVFA---LMGPTGVGKTTTTAKLAARCVMRHGASKVAL-LTTDSY 297 (484)
T ss_pred cEEE---EECCCCccHHHHHHHHHHHHHHhcCCCeEEE-EeCCcc
Confidence 5665 89999999999999999533 2 235 888884
No 471
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.13 E-value=0.019 Score=43.65 Aligned_cols=32 Identities=3% Similarity=-0.332 Sum_probs=24.6
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
=.+.+++. |+||.|||||+|..-|+.-+ .|+|
T Consensus 32 i~~Ge~~~---l~G~nGsGKSTLl~~l~Gl~~~~~G~i 66 (233)
T PRK11629 32 IGEGEMMA---IVGSSGSGKSTLLHLLGGLDTPTSGDV 66 (233)
T ss_pred EcCCcEEE---EECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 34666666 89999999999999998653 3555
No 472
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=95.12 E-value=0.019 Score=44.17 Aligned_cols=25 Identities=16% Similarity=0.015 Sum_probs=21.5
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhc
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~ 44 (115)
.+.+++. |+||+|||||+|..-|+.
T Consensus 30 ~~Ge~~~---i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14242 30 EQNQVTA---LIGPSGCGKSTFLRCLNR 54 (253)
T ss_pred eCCCEEE---EECCCCCCHHHHHHHHHh
Confidence 5667776 899999999999999984
No 473
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.12 E-value=0.022 Score=41.54 Aligned_cols=31 Identities=10% Similarity=-0.197 Sum_probs=25.0
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.|.+++. |+||.|||||+|..-||--. .|+|
T Consensus 26 ~~G~~~~---l~G~nGsGKstLl~~i~G~~~~~~G~i 59 (171)
T cd03228 26 KPGEKVA---IVGPSGSGKSTLLKLLLRLYDPTSGEI 59 (171)
T ss_pred cCCCEEE---EECCCCCCHHHHHHHHHcCCCCCCCEE
Confidence 4677776 89999999999998888654 4666
No 474
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.12 E-value=0.021 Score=43.88 Aligned_cols=31 Identities=6% Similarity=-0.116 Sum_probs=24.9
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+.+++. |+||.|||||+|..-||.-+ .|+|
T Consensus 27 ~~Ge~~~---i~G~nGsGKSTLl~~l~Gl~~p~~G~i 60 (241)
T PRK14250 27 EGGAIYT---IVGPSGAGKSTLIKLINRLIDPTEGSI 60 (241)
T ss_pred cCCCEEE---EECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 4667766 89999999999999998654 4666
No 475
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.12 E-value=0.11 Score=40.35 Aligned_cols=28 Identities=11% Similarity=-0.117 Sum_probs=22.9
Q ss_pred cCCCceeEeeeeeeccCCCchhHHHHHHhcC
Q psy7554 15 TGTPDQVYLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 15 ~~~~~~~~~~~li~GpTasGKS~lai~LA~~ 45 (115)
+=.+.+++. |+||.|||||+|..-|+.-
T Consensus 34 ~i~~Ge~~~---i~G~nGsGKSTLl~~i~Gl 61 (258)
T PRK14268 34 QIPKNSVTA---LIGPSGCGKSTFIRCLNRM 61 (258)
T ss_pred EEcCCCEEE---EECCCCCCHHHHHHHHhcC
Confidence 345667766 8999999999999999854
No 476
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=95.12 E-value=0.022 Score=39.57 Aligned_cols=23 Identities=9% Similarity=0.049 Sum_probs=19.4
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+-++++|++++|||+|...+...
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~ 25 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQS 25 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhC
Confidence 35789999999999998887643
No 477
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=95.11 E-value=0.017 Score=41.38 Aligned_cols=21 Identities=5% Similarity=-0.091 Sum_probs=16.0
Q ss_pred eeeccCCCchhHHHHHHhcCC
Q psy7554 26 LSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 26 li~GpTasGKS~lai~LA~~~ 46 (115)
+|+||+|+|||.+.-.|.-.+
T Consensus 23 vi~G~Ng~GKStil~ai~~~L 43 (202)
T PF13476_consen 23 VIYGPNGSGKSTILEAIRYAL 43 (202)
T ss_dssp EEEESTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 489999999999955554333
No 478
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=95.10 E-value=0.028 Score=48.19 Aligned_cols=33 Identities=6% Similarity=-0.338 Sum_probs=25.6
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHhcCC---CceEeec
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFCRTY 53 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI~Is 53 (115)
|.|.+. |+||+|||||+|..-|+.-+ .|+|.++
T Consensus 368 ~G~~~a---IvG~sGsGKSTLl~ll~gl~~p~~G~I~i~ 403 (582)
T PRK11176 368 AGKTVA---LVGRSGSGKSTIANLLTRFYDIDEGEILLD 403 (582)
T ss_pred CCCEEE---EECCCCCCHHHHHHHHHhccCCCCceEEEC
Confidence 555555 99999999999999998765 4666444
No 479
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=95.10 E-value=0.038 Score=42.04 Aligned_cols=34 Identities=3% Similarity=-0.175 Sum_probs=26.5
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceEeec
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFCRTY 53 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI~Is 53 (115)
.+.+++. |+||.|||||+|..-||... .|+|.++
T Consensus 4 ~~Ge~~~---l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 40 (223)
T TIGR03771 4 DKGELLG---LLGPNGAGKTTLLRAILGLIPPAKGTVKVA 40 (223)
T ss_pred CCCcEEE---EECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 3667777 89999999999999999654 4666443
No 480
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.10 E-value=0.01 Score=44.67 Aligned_cols=38 Identities=8% Similarity=-0.239 Sum_probs=26.1
Q ss_pred eeeeccCCCchhHHHHHHhcCCC---ceEeeccceeeeccCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD---LFCRTYQVYLMVYKGL 63 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~---~eI~IsaDSmQVYkgl 63 (115)
+.|+|..|||||+||..|.+++. -.+ +-.|+=.+=++|
T Consensus 5 IwltGlsGsGKtTlA~~L~~~L~~~g~~~-~~LDgD~lR~~l 45 (156)
T PF01583_consen 5 IWLTGLSGSGKTTLARALERRLFARGIKV-YLLDGDNLRHGL 45 (156)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTS-E-EEEEHHHHCTTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCcE-EEecCcchhhcc
Confidence 45799999999999999998762 222 334544444554
No 481
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=95.10 E-value=0.022 Score=43.13 Aligned_cols=26 Identities=8% Similarity=-0.098 Sum_probs=22.3
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcC
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~ 45 (115)
.+++++. |+||.|||||+|..-|+.-
T Consensus 31 ~~Ge~~~---l~G~nGsGKSTLlk~l~G~ 56 (226)
T cd03234 31 ESGQVMA---ILGSSGSGKTTLLDAISGR 56 (226)
T ss_pred cCCeEEE---EECCCCCCHHHHHHHHhCc
Confidence 5777877 8999999999999988854
No 482
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=95.09 E-value=0.021 Score=43.59 Aligned_cols=31 Identities=0% Similarity=-0.315 Sum_probs=25.4
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+.+++. |+||.|||||+|..-|+.-. .|+|
T Consensus 9 ~~Ge~~~---i~G~nGsGKSTLl~~l~Gl~~p~~G~i 42 (230)
T TIGR01184 9 QQGEFIS---LIGHSGCGKSTLLNLISGLAQPTSGGV 42 (230)
T ss_pred cCCCEEE---EECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 4677777 89999999999999998654 4666
No 483
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.09 E-value=0.02 Score=43.50 Aligned_cols=33 Identities=9% Similarity=-0.244 Sum_probs=26.4
Q ss_pred cCCCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 15 TGTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 15 ~~~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
+=.+.+++. |+||.|||||+|..-||-.. .|+|
T Consensus 25 ~i~~Ge~~~---l~G~nGsGKSTLl~~i~G~~~~~~G~i 60 (238)
T cd03249 25 TIPPGKTVA---LVGSSGCGKSTVVSLLERFYDPTSGEI 60 (238)
T ss_pred EecCCCEEE---EEeCCCCCHHHHHHHHhccCCCCCCEE
Confidence 335778887 99999999999999998553 4666
No 484
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.08 E-value=0.019 Score=41.71 Aligned_cols=21 Identities=10% Similarity=-0.027 Sum_probs=14.8
Q ss_pred eeeeccCCCchhHHHHHHhcC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~ 45 (115)
.+|.||.|+|||.+...++..
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~ 40 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQ 40 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 458999999999875555433
No 485
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=95.08 E-value=0.024 Score=40.13 Aligned_cols=23 Identities=17% Similarity=0.062 Sum_probs=20.1
Q ss_pred eeeeeccCCCchhHHHHHHhcCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~ 46 (115)
.++++|+.+||||+|..++....
T Consensus 3 ki~i~G~~~~GKSsli~~l~~~~ 25 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYADDS 25 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998653
No 486
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.08 E-value=0.013 Score=48.70 Aligned_cols=25 Identities=12% Similarity=0.016 Sum_probs=22.3
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCc
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDL 48 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~ 48 (115)
.+||.||.|+||+.+|..+|+.+.+
T Consensus 47 a~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 47 ALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred eEeeECCCCCCHHHHHHHHHHHHcC
Confidence 4569999999999999999998765
No 487
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.08 E-value=0.019 Score=47.86 Aligned_cols=29 Identities=7% Similarity=-0.113 Sum_probs=22.0
Q ss_pred eeeccCCCchhHHHHHHh---cCCCceEeeccc
Q psy7554 26 LSCLPDSVCPHAHQVDLT---DGPDLFCRTYQV 55 (115)
Q Consensus 26 li~GpTasGKS~lai~LA---~~~~~eI~IsaD 55 (115)
.|.||.|||||.|++.++ ++.++.+ +..|
T Consensus 59 eI~Gp~GsGKTtLal~~~~~~~~~g~~~-vyId 90 (325)
T cd00983 59 EIYGPESSGKTTLALHAIAEAQKLGGTV-AFID 90 (325)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCCE-EEEC
Confidence 399999999999999987 3445555 4444
No 488
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.06 E-value=0.1 Score=40.77 Aligned_cols=29 Identities=7% Similarity=-0.133 Sum_probs=23.8
Q ss_pred cCCCceeEeeeeeeccCCCchhHHHHHHhcCC
Q psy7554 15 TGTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 15 ~~~~~~~~~~~li~GpTasGKS~lai~LA~~~ 46 (115)
+=.|.+++. |+||.|+|||+|..-|+.-+
T Consensus 30 ~i~~Ge~~~---i~G~nGsGKSTLl~~l~Gl~ 58 (261)
T PRK14263 30 PIRKNEITG---FIGPSGCGKSTVLRSLNRMN 58 (261)
T ss_pred EEcCCCEEE---EECCCCCCHHHHHHHHHccc
Confidence 345778877 89999999999999888543
No 489
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.06 E-value=0.013 Score=52.95 Aligned_cols=29 Identities=10% Similarity=-0.093 Sum_probs=23.3
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCCCc
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGPDL 48 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~~~ 48 (115)
.+.+|.+ ++||+|+|||.|+..||+.+.-
T Consensus 101 ~~~~IL~---LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 101 EKKQILY---LLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred CCCceEE---EecCCCCCchHHHHHHHHHHHh
Confidence 3555544 7999999999999999986654
No 490
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=95.06 E-value=0.02 Score=39.34 Aligned_cols=22 Identities=5% Similarity=-0.171 Sum_probs=19.1
Q ss_pred eeeeccCCCchhHHHHHHhcCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~ 46 (115)
++++|++++|||+|..++....
T Consensus 3 v~liG~~~vGKSsL~~~l~~~~ 24 (142)
T TIGR02528 3 IMFIGSVGCGKTTLTQALQGEE 24 (142)
T ss_pred EEEECCCCCCHHHHHHHHcCCc
Confidence 5789999999999999997653
No 491
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.06 E-value=0.023 Score=42.42 Aligned_cols=32 Identities=3% Similarity=-0.235 Sum_probs=25.3
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
=.|.+++. |.||.|||||+|..-|+.-. .|+|
T Consensus 21 i~~Ge~~~---l~G~nGsGKSTLl~~l~gl~~~~~G~i 55 (211)
T cd03298 21 FAQGEITA---IVGPSGSGKSTLLNLIAGFETPQSGRV 55 (211)
T ss_pred EcCCCEEE---EECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 35777777 89999999999999888544 4665
No 492
>PRK14974 cell division protein FtsY; Provisional
Probab=95.06 E-value=0.024 Score=47.19 Aligned_cols=31 Identities=3% Similarity=-0.210 Sum_probs=22.9
Q ss_pred eeeeccCCCchhHHHHHHhcCC-----CceEeeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP-----DLFCRTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~-----~~eI~IsaDS 56 (115)
++++||+|||||+++..||..+ ...+ +++|.
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l~~~g~~V~l-i~~Dt 178 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYLKKNGFSVVI-AAGDT 178 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCeEEE-ecCCc
Confidence 4589999999999777777433 2345 88884
No 493
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=95.05 E-value=0.012 Score=44.50 Aligned_cols=39 Identities=8% Similarity=-0.246 Sum_probs=27.0
Q ss_pred eeeeccCCCchhHHHHHHhcC----CCceEeeccceeeeccCCc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDG----PDLFCRTYQVYLMVYKGLD 64 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~----~~~eI~IsaDSmQVYkgld 64 (115)
+.|.|.||||||.++..|.++ .+..+ |--|-.-=|..+.
T Consensus 26 ~~I~G~TGsGKS~~~~~ll~~l~~~~~~~~-ii~D~~GEY~~~~ 68 (229)
T PF01935_consen 26 IAIFGTTGSGKSNTVKVLLEELLKKKGAKV-IIFDPHGEYASLF 68 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCCCE-EEEcCCCcchhhh
Confidence 468999999999887666644 44555 5566665565555
No 494
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.05 E-value=0.0099 Score=51.30 Aligned_cols=53 Identities=9% Similarity=-0.235 Sum_probs=39.3
Q ss_pred ceeeeeccCCCceeEeeeeeeccCCCchhHHHHHHhcCCCceEeeccceeeecc
Q psy7554 8 HYQVNLLTGTPDQVYLSYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYK 61 (115)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYk 61 (115)
|---|.+.-.+-.+=+.++|.||.|+|||-+|..+|++++... |..++-+++.
T Consensus 134 hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~-i~vsa~eL~s 186 (413)
T PLN00020 134 HIAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEP-IVMSAGELES 186 (413)
T ss_pred HHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe-EEEEHHHhhc
Confidence 4444555433345666778999999999999999999999987 7776655553
No 495
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.05 E-value=0.024 Score=41.48 Aligned_cols=31 Identities=6% Similarity=-0.166 Sum_probs=24.5
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+.+++. |+||.|||||+|..-||... .|.|
T Consensus 24 ~~Ge~~~---i~G~nGsGKStLl~~l~G~~~~~~G~i 57 (173)
T cd03230 24 EKGEIYG---LLGPNGAGKTTLIKIILGLLKPDSGEI 57 (173)
T ss_pred cCCcEEE---EECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 4666666 89999999999999998653 4555
No 496
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.05 E-value=0.02 Score=43.31 Aligned_cols=23 Identities=4% Similarity=-0.073 Sum_probs=19.1
Q ss_pred ceeEeeeeeeccCCCchhHHHHHHhc
Q psy7554 19 DQVYLSYLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 19 ~~~~~~~li~GpTasGKS~lai~LA~ 44 (115)
..+++ |.|++|+|||.++..+|.
T Consensus 16 g~~~l---i~G~~G~GKt~~~~~~~~ 38 (224)
T TIGR03880 16 GHVIV---VIGEYGTGKTTFSLQFLY 38 (224)
T ss_pred CeEEE---EECCCCCCHHHHHHHHHH
Confidence 44555 899999999999998874
No 497
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=95.04 E-value=0.019 Score=41.68 Aligned_cols=34 Identities=18% Similarity=0.001 Sum_probs=24.4
Q ss_pred eeeccCCCceeEeeeeeeccCCCchhHHHHHHhcC
Q psy7554 11 VNLLTGTPDQVYLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 11 ~~~~~~~~~~~~~~~li~GpTasGKS~lai~LA~~ 45 (115)
||| ++.|.+==..++|+|++++|||+|...|...
T Consensus 8 ~~~-~~~~~~~~~~i~ivG~~~~GKStlin~l~~~ 41 (179)
T TIGR03598 8 VKL-KQLPPDDGPEIAFAGRSNVGKSSLINALTNR 41 (179)
T ss_pred ccH-hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 443 3444332335789999999999999999865
No 498
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.04 E-value=0.017 Score=50.94 Aligned_cols=30 Identities=10% Similarity=0.048 Sum_probs=22.3
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhcCCCc
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTDGPDL 48 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~~~~~ 48 (115)
.+|.-++| ++||||||||..-..+-+.++.
T Consensus 255 ~~p~GliL---vTGPTGSGKTTTLY~~L~~ln~ 284 (500)
T COG2804 255 NRPQGLIL---VTGPTGSGKTTTLYAALSELNT 284 (500)
T ss_pred hCCCeEEE---EeCCCCCCHHHHHHHHHHHhcC
Confidence 45666666 9999999999886666665543
No 499
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.04 E-value=0.024 Score=41.67 Aligned_cols=31 Identities=6% Similarity=-0.170 Sum_probs=24.9
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+.+++. |+||.|||||+|..-|+.-. .|+|
T Consensus 23 ~~G~~~~---l~G~nGsGKStLl~~i~G~~~~~~G~v 56 (180)
T cd03214 23 EAGEIVG---ILGPNGAGKSTLLKTLAGLLKPSSGEI 56 (180)
T ss_pred CCCCEEE---EECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 4677777 89999999999988888643 4666
No 500
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=95.03 E-value=0.023 Score=42.74 Aligned_cols=35 Identities=9% Similarity=-0.154 Sum_probs=27.0
Q ss_pred cCCCceeEeeeeeeccCCCchhHHHHHHhcCC---CceEee
Q psy7554 15 TGTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFCRT 52 (115)
Q Consensus 15 ~~~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI~I 52 (115)
+=.+.+++. |+||.|||||+|..-|+.-+ .|+|.+
T Consensus 30 ~i~~Ge~~~---l~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 67 (224)
T TIGR02324 30 TVNAGECVA---LSGPSGAGKSTLLKSLYANYLPDSGRILV 67 (224)
T ss_pred EECCCCEEE---EECCCCCCHHHHHHHHhCCCCCCCCeEEE
Confidence 335777777 99999999999999998654 466633
Done!