Query psy7554
Match_columns 115
No_of_seqs 191 out of 1249
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 21:22:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7554.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7554hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3exa_A TRNA delta(2)-isopenten 100.0 4.1E-33 1.4E-37 227.5 8.9 87 25-112 6-92 (322)
2 3foz_A TRNA delta(2)-isopenten 100.0 6E-33 2.1E-37 226.0 6.9 86 25-111 13-98 (316)
3 3a8t_A Adenylate isopentenyltr 100.0 1.2E-32 4.2E-37 225.4 7.9 86 25-111 43-129 (339)
4 3eph_A TRNA isopentenyltransfe 100.0 4.2E-31 1.4E-35 221.1 6.7 86 25-111 5-90 (409)
5 3crm_A TRNA delta(2)-isopenten 99.9 1.4E-27 4.7E-32 193.9 6.8 86 25-111 8-93 (323)
6 3d3q_A TRNA delta(2)-isopenten 99.9 1.9E-26 6.5E-31 188.4 7.1 86 25-111 10-95 (340)
7 2ze6_A Isopentenyl transferase 99.8 2.7E-21 9.3E-26 148.3 5.7 85 25-111 4-89 (253)
8 2qmh_A HPR kinase/phosphorylas 99.8 5.3E-22 1.8E-26 153.7 -0.8 69 25-101 37-112 (205)
9 3tau_A Guanylate kinase, GMP k 98.5 8.5E-08 2.9E-12 70.4 4.1 52 26-86 12-63 (208)
10 3ney_A 55 kDa erythrocyte memb 98.3 3.7E-07 1.3E-11 69.0 3.7 52 26-86 23-74 (197)
11 1kgd_A CASK, peripheral plasma 98.2 7.9E-07 2.7E-11 63.7 3.9 52 25-85 8-59 (180)
12 3trf_A Shikimate kinase, SK; a 98.1 5.3E-07 1.8E-11 63.7 1.4 32 25-57 8-39 (185)
13 1c9k_A COBU, adenosylcobinamid 98.0 1.5E-06 5.2E-11 65.1 2.1 25 25-50 2-26 (180)
14 1ly1_A Polynucleotide kinase; 98.0 4.1E-06 1.4E-10 58.0 3.1 32 25-57 5-37 (181)
15 3kb2_A SPBC2 prophage-derived 97.9 3.2E-06 1.1E-10 58.2 2.2 32 25-57 4-35 (173)
16 1ex7_A Guanylate kinase; subst 97.9 5.9E-06 2E-10 61.6 3.6 51 25-84 4-54 (186)
17 3t61_A Gluconokinase; PSI-biol 97.9 3.7E-06 1.3E-10 60.5 2.1 32 25-57 21-52 (202)
18 1tev_A UMP-CMP kinase; ploop, 97.9 3.5E-06 1.2E-10 58.9 1.9 32 25-57 6-37 (196)
19 3tr0_A Guanylate kinase, GMP k 97.9 1.1E-05 3.7E-10 57.4 4.0 54 18-84 6-59 (205)
20 1e6c_A Shikimate kinase; phosp 97.9 3.8E-06 1.3E-10 58.3 1.4 32 25-57 5-36 (173)
21 2iyv_A Shikimate kinase, SK; t 97.9 4.2E-06 1.5E-10 59.0 1.6 32 25-57 5-36 (184)
22 3dl0_A Adenylate kinase; phosp 97.8 5.8E-06 2E-10 59.9 2.3 31 25-56 3-33 (216)
23 3lw7_A Adenylate kinase relate 97.8 7.2E-06 2.5E-10 55.7 2.4 29 25-55 4-32 (179)
24 2bwj_A Adenylate kinase 5; pho 97.8 4.2E-06 1.4E-10 59.1 1.2 32 25-57 15-46 (199)
25 2qor_A Guanylate kinase; phosp 97.8 1.2E-05 4.2E-10 58.2 3.6 50 25-83 15-64 (204)
26 3fb4_A Adenylate kinase; psych 97.8 5.6E-06 1.9E-10 59.8 1.7 31 25-56 3-33 (216)
27 3vaa_A Shikimate kinase, SK; s 97.8 6.1E-06 2.1E-10 59.6 1.8 32 25-57 28-59 (199)
28 1ukz_A Uridylate kinase; trans 97.8 8.5E-06 2.9E-10 58.3 2.5 31 25-56 18-48 (203)
29 1zd8_A GTP:AMP phosphotransfer 97.8 6.9E-06 2.4E-10 60.3 1.9 32 25-57 10-41 (227)
30 1via_A Shikimate kinase; struc 97.8 5.7E-06 1.9E-10 58.2 1.4 32 25-57 7-38 (175)
31 1qf9_A UMP/CMP kinase, protein 97.8 6.8E-06 2.3E-10 57.3 1.7 31 25-56 9-39 (194)
32 3cm0_A Adenylate kinase; ATP-b 97.8 7.3E-06 2.5E-10 57.6 1.9 31 25-56 7-37 (186)
33 3lnc_A Guanylate kinase, GMP k 97.8 1.3E-05 4.6E-10 58.9 3.2 54 18-84 26-80 (231)
34 2c95_A Adenylate kinase 1; tra 97.8 7.5E-06 2.6E-10 57.7 1.7 31 25-56 12-42 (196)
35 1kag_A SKI, shikimate kinase I 97.8 1.1E-05 3.8E-10 56.1 2.5 32 25-57 7-38 (173)
36 2rhm_A Putative kinase; P-loop 97.8 7.2E-06 2.5E-10 57.6 1.5 32 25-57 8-39 (193)
37 3iij_A Coilin-interacting nucl 97.8 8.7E-06 3E-10 57.4 1.9 32 25-57 14-45 (180)
38 2pt5_A Shikimate kinase, SK; a 97.7 1E-05 3.4E-10 56.0 1.6 32 25-57 3-34 (168)
39 2if2_A Dephospho-COA kinase; a 97.7 1.5E-05 5.3E-10 57.0 2.5 31 25-57 4-34 (204)
40 1uf9_A TT1252 protein; P-loop, 97.7 1.6E-05 5.6E-10 56.2 2.5 31 25-57 11-41 (203)
41 2qt1_A Nicotinamide riboside k 97.7 2.9E-05 1E-09 55.9 3.7 32 25-57 24-56 (207)
42 4eun_A Thermoresistant glucoki 97.7 2E-05 6.8E-10 56.9 2.8 43 11-57 21-63 (200)
43 1y63_A LMAJ004144AAA protein; 97.7 1.7E-05 5.8E-10 56.7 2.4 32 25-57 13-45 (184)
44 1gvn_B Zeta; postsegregational 97.7 1.9E-05 6.4E-10 61.4 2.8 32 25-57 36-69 (287)
45 1qhx_A CPT, protein (chloramph 97.7 1.9E-05 6.5E-10 55.1 2.5 32 25-56 6-38 (178)
46 1zuh_A Shikimate kinase; alpha 97.7 1.3E-05 4.3E-10 55.9 1.6 32 25-57 10-41 (168)
47 1uj2_A Uridine-cytidine kinase 97.7 2E-05 6.8E-10 59.1 2.7 37 24-63 24-70 (252)
48 1kht_A Adenylate kinase; phosp 97.6 1.2E-05 4E-10 56.2 1.1 31 25-56 6-41 (192)
49 1aky_A Adenylate kinase; ATP:A 97.6 1.7E-05 5.7E-10 57.9 1.9 31 25-56 7-37 (220)
50 1knq_A Gluconate kinase; ALFA/ 97.6 2.1E-05 7.2E-10 55.0 2.3 32 25-57 11-42 (175)
51 2grj_A Dephospho-COA kinase; T 97.6 1.5E-05 5E-10 59.1 1.4 32 25-57 15-46 (192)
52 1e4v_A Adenylate kinase; trans 97.6 1.3E-05 4.4E-10 58.4 1.1 31 25-56 3-33 (214)
53 1cke_A CK, MSSA, protein (cyti 97.6 1.5E-05 5.1E-10 57.7 1.4 32 25-57 8-39 (227)
54 1zak_A Adenylate kinase; ATP:A 97.6 1.3E-05 4.5E-10 58.5 1.0 31 25-56 8-38 (222)
55 2cdn_A Adenylate kinase; phosp 97.6 2.7E-05 9.3E-10 55.9 2.5 43 10-56 11-53 (201)
56 3ake_A Cytidylate kinase; CMP 97.6 1.6E-05 5.6E-10 56.4 1.2 32 25-57 5-36 (208)
57 2bdt_A BH3686; alpha-beta prot 97.6 2.8E-05 9.4E-10 55.2 2.2 33 25-57 5-37 (189)
58 1zp6_A Hypothetical protein AT 97.6 9.6E-05 3.3E-09 52.0 4.9 38 17-57 7-45 (191)
59 3be4_A Adenylate kinase; malar 97.6 1.9E-05 6.4E-10 57.9 1.3 31 25-56 8-38 (217)
60 2pbr_A DTMP kinase, thymidylat 97.6 2.6E-05 8.9E-10 54.5 1.9 30 25-55 3-35 (195)
61 3zvl_A Bifunctional polynucleo 97.5 3.4E-05 1.2E-09 62.8 2.7 37 25-62 261-297 (416)
62 1jjv_A Dephospho-COA kinase; P 97.5 4.1E-05 1.4E-09 55.0 2.8 31 25-57 5-35 (206)
63 3tlx_A Adenylate kinase 2; str 97.5 2.7E-05 9.3E-10 58.6 1.9 31 25-56 32-62 (243)
64 2xb4_A Adenylate kinase; ATP-b 97.5 2.3E-05 7.9E-10 57.9 1.4 31 25-56 3-33 (223)
65 1ak2_A Adenylate kinase isoenz 97.5 3.2E-05 1.1E-09 57.2 1.8 31 25-56 19-49 (233)
66 1nks_A Adenylate kinase; therm 97.5 2.5E-05 8.4E-10 54.5 0.9 23 25-47 4-26 (194)
67 1vht_A Dephospho-COA kinase; s 97.4 7E-05 2.4E-09 54.3 3.1 31 25-57 7-37 (218)
68 3a00_A Guanylate kinase, GMP k 97.4 8.6E-05 2.9E-09 53.1 3.6 50 25-83 4-53 (186)
69 3h4m_A Proteasome-activating n 97.4 7.7E-05 2.6E-09 55.8 3.3 35 24-59 53-87 (285)
70 1ltq_A Polynucleotide kinase; 97.4 5.5E-05 1.9E-09 57.3 2.4 30 25-55 5-35 (301)
71 2p65_A Hypothetical protein PF 97.4 5E-05 1.7E-09 52.0 1.8 23 24-46 45-67 (187)
72 1a7j_A Phosphoribulokinase; tr 97.4 2.5E-05 8.5E-10 61.0 0.2 32 25-57 8-44 (290)
73 1z6g_A Guanylate kinase; struc 97.4 0.00012 4.1E-09 54.1 3.7 54 17-82 21-74 (218)
74 2h92_A Cytidylate kinase; ross 97.4 6.7E-05 2.3E-09 54.2 2.1 32 25-57 6-37 (219)
75 2jaq_A Deoxyguanosine kinase; 97.4 7.3E-05 2.5E-09 52.6 2.2 26 25-50 3-28 (205)
76 2vli_A Antibiotic resistance p 97.3 6.9E-05 2.4E-09 52.3 2.0 27 25-52 8-34 (183)
77 2jeo_A Uridine-cytidine kinase 97.3 0.00011 3.8E-09 54.8 3.3 44 16-65 22-75 (245)
78 1jbk_A CLPB protein; beta barr 97.3 8.9E-05 3.1E-09 50.4 2.4 22 25-46 46-67 (195)
79 1d2n_A N-ethylmaleimide-sensit 97.3 7.1E-05 2.4E-09 56.1 2.1 31 20-50 62-92 (272)
80 3tqf_A HPR(Ser) kinase; transf 97.3 8.9E-05 3E-09 56.4 2.4 45 24-70 18-64 (181)
81 1um8_A ATP-dependent CLP prote 97.3 8.9E-05 3E-09 58.3 2.4 33 24-57 74-106 (376)
82 2f6r_A COA synthase, bifunctio 97.3 8.2E-05 2.8E-09 57.4 2.2 31 25-57 78-108 (281)
83 2p5t_B PEZT; postsegregational 97.3 9.8E-05 3.3E-09 55.6 2.4 32 25-57 35-68 (253)
84 1ofh_A ATP-dependent HSL prote 97.3 7.8E-05 2.7E-09 55.7 1.7 27 24-50 52-78 (310)
85 3syl_A Protein CBBX; photosynt 97.3 9.7E-05 3.3E-09 55.7 2.2 24 23-46 68-91 (309)
86 3b9p_A CG5977-PA, isoform A; A 97.3 0.00014 4.8E-09 54.8 3.0 27 24-50 56-82 (297)
87 1lv7_A FTSH; alpha/beta domain 97.3 0.00012 4E-09 54.4 2.5 32 24-56 47-78 (257)
88 3asz_A Uridine kinase; cytidin 97.3 8.9E-05 3.1E-09 53.2 1.8 32 25-57 9-42 (211)
89 3r20_A Cytidylate kinase; stru 97.2 7.7E-05 2.6E-09 57.5 1.4 37 25-64 12-48 (233)
90 2qz4_A Paraplegin; AAA+, SPG7, 97.2 0.00011 3.7E-09 53.9 2.1 27 24-50 41-67 (262)
91 3hws_A ATP-dependent CLP prote 97.2 0.00012 4.2E-09 57.4 2.5 33 24-57 53-85 (363)
92 4e22_A Cytidylate kinase; P-lo 97.2 0.00011 3.6E-09 55.6 2.1 33 25-60 30-62 (252)
93 2wwf_A Thymidilate kinase, put 97.2 4E-05 1.4E-09 54.7 -0.4 30 25-55 13-42 (212)
94 2v54_A DTMP kinase, thymidylat 97.2 0.00017 5.9E-09 51.0 2.9 26 25-50 7-33 (204)
95 3n70_A Transport activator; si 97.2 0.00019 6.6E-09 49.6 3.0 23 24-46 26-48 (145)
96 3t15_A Ribulose bisphosphate c 97.2 6.9E-05 2.3E-09 57.9 0.7 33 23-56 37-69 (293)
97 2z0h_A DTMP kinase, thymidylat 97.2 0.00012 4.2E-09 51.4 2.0 28 25-53 3-33 (197)
98 1znw_A Guanylate kinase, GMP k 97.2 0.00029 9.9E-09 51.1 3.8 63 7-82 8-70 (207)
99 3a4m_A L-seryl-tRNA(SEC) kinas 97.2 0.00017 5.7E-09 54.6 2.6 32 25-57 7-43 (260)
100 3sr0_A Adenylate kinase; phosp 97.2 0.00014 4.7E-09 54.5 2.0 29 25-54 3-31 (206)
101 2plr_A DTMP kinase, probable t 97.2 0.00011 3.8E-09 51.9 1.5 24 25-48 7-30 (213)
102 2bbw_A Adenylate kinase 4, AK4 97.2 8.5E-05 2.9E-09 55.2 0.8 31 25-56 30-60 (246)
103 3cf0_A Transitional endoplasmi 97.1 0.00024 8.1E-09 54.7 3.2 31 24-55 51-81 (301)
104 2r62_A Cell division protease 97.1 8.4E-05 2.9E-09 55.2 0.5 31 24-55 46-76 (268)
105 1q3t_A Cytidylate kinase; nucl 97.1 0.00014 4.8E-09 53.8 1.4 32 25-57 19-50 (236)
106 3pfi_A Holliday junction ATP-d 97.1 0.00023 7.8E-09 54.5 2.5 33 24-56 57-90 (338)
107 3vfd_A Spastin; ATPase, microt 97.1 0.00029 9.8E-09 56.0 3.2 33 23-56 149-181 (389)
108 2pez_A Bifunctional 3'-phospho 97.1 0.00019 6.6E-09 50.5 1.9 37 25-62 8-47 (179)
109 3uie_A Adenylyl-sulfate kinase 97.1 0.00019 6.4E-09 51.8 1.8 28 16-46 22-49 (200)
110 3bos_A Putative DNA replicatio 97.1 0.00028 9.5E-09 50.2 2.7 23 24-46 54-76 (242)
111 3d8b_A Fidgetin-like protein 1 97.1 0.00032 1.1E-08 55.5 3.3 27 24-50 119-145 (357)
112 1nn5_A Similar to deoxythymidy 97.0 9.5E-05 3.2E-09 52.7 -0.1 24 25-48 12-35 (215)
113 2j41_A Guanylate kinase; GMP, 97.0 0.00034 1.2E-08 49.5 2.8 22 25-46 9-30 (207)
114 3umf_A Adenylate kinase; rossm 97.0 0.00023 7.9E-09 54.1 2.0 29 25-54 32-60 (217)
115 2bjv_A PSP operon transcriptio 97.0 0.00051 1.8E-08 51.1 3.8 34 24-57 31-68 (265)
116 3eie_A Vacuolar protein sortin 97.0 0.00027 9.3E-09 54.8 2.4 32 23-55 52-83 (322)
117 3co5_A Putative two-component 97.0 0.00026 8.9E-09 48.9 2.0 24 24-47 29-52 (143)
118 2w58_A DNAI, primosome compone 97.0 0.00038 1.3E-08 49.6 2.7 23 24-46 56-78 (202)
119 2c9o_A RUVB-like 1; hexameric 97.0 0.00028 9.4E-09 57.7 2.2 36 24-60 65-102 (456)
120 1xwi_A SKD1 protein; VPS4B, AA 97.0 0.00048 1.6E-08 53.9 3.4 27 24-50 47-74 (322)
121 3ec2_A DNA replication protein 97.0 0.00041 1.4E-08 48.8 2.7 22 25-46 41-62 (180)
122 1sxj_A Activator 1 95 kDa subu 96.9 0.00038 1.3E-08 57.8 2.9 33 22-55 77-109 (516)
123 1lvg_A Guanylate kinase, GMP k 96.9 0.00044 1.5E-08 50.3 2.9 22 25-46 7-28 (198)
124 2chg_A Replication factor C sm 96.9 0.00041 1.4E-08 48.1 2.5 22 25-46 41-62 (226)
125 2qp9_X Vacuolar protein sortin 96.9 0.00025 8.7E-09 56.2 1.3 35 24-59 86-120 (355)
126 1hqc_A RUVB; extended AAA-ATPa 96.9 0.00027 9.3E-09 53.4 1.4 34 23-56 39-73 (324)
127 1ixz_A ATP-dependent metallopr 96.9 0.00047 1.6E-08 51.0 2.6 26 25-50 52-77 (254)
128 3c8u_A Fructokinase; YP_612366 96.9 0.00043 1.5E-08 50.2 2.3 37 17-57 20-61 (208)
129 1njg_A DNA polymerase III subu 96.8 0.00057 2E-08 47.6 2.7 23 24-46 47-69 (250)
130 3nwj_A ATSK2; P loop, shikimat 96.8 0.00031 1.1E-08 54.1 1.4 32 25-57 51-82 (250)
131 1m7g_A Adenylylsulfate kinase; 96.8 0.0003 1E-08 51.1 1.0 23 25-47 28-50 (211)
132 3uk6_A RUVB-like 2; hexameric 96.8 0.00037 1.3E-08 53.7 1.6 25 24-48 72-96 (368)
133 1l8q_A Chromosomal replication 96.8 0.00035 1.2E-08 53.6 1.4 26 21-46 36-61 (324)
134 1s96_A Guanylate kinase, GMP k 96.8 0.0011 3.9E-08 49.7 4.1 54 19-84 16-70 (219)
135 4fcw_A Chaperone protein CLPB; 96.7 0.00061 2.1E-08 51.2 2.3 23 24-46 49-71 (311)
136 2yvu_A Probable adenylyl-sulfa 96.7 0.00037 1.3E-08 49.3 1.0 23 25-47 16-38 (186)
137 2v1u_A Cell division control p 96.7 0.0005 1.7E-08 52.4 1.7 23 24-46 46-68 (387)
138 4b4t_K 26S protease regulatory 96.7 0.00067 2.3E-08 56.6 2.4 34 24-58 208-241 (428)
139 2dr3_A UPF0273 protein PH0284; 96.7 0.00098 3.4E-08 48.0 3.1 24 18-44 22-45 (247)
140 4gp7_A Metallophosphoesterase; 96.7 0.001 3.5E-08 47.1 3.1 33 18-56 8-40 (171)
141 1tue_A Replication protein E1; 96.7 0.00051 1.8E-08 53.1 1.5 40 14-56 52-91 (212)
142 2cvh_A DNA repair and recombin 96.7 0.0012 4E-08 46.9 3.3 25 17-44 18-42 (220)
143 1iy2_A ATP-dependent metallopr 96.6 0.00087 3E-08 50.5 2.6 26 25-50 76-101 (278)
144 4a74_A DNA repair and recombin 96.6 0.0012 4.1E-08 47.1 3.2 24 18-44 24-47 (231)
145 2zan_A Vacuolar protein sortin 96.6 0.001 3.5E-08 54.4 3.2 28 23-50 168-196 (444)
146 2qby_B CDC6 homolog 3, cell di 96.6 0.00077 2.6E-08 51.8 2.2 23 24-46 47-69 (384)
147 1ko7_A HPR kinase/phosphatase; 96.6 0.001 3.5E-08 53.6 2.8 39 24-64 146-184 (314)
148 2ehv_A Hypothetical protein PH 96.6 0.0013 4.6E-08 47.4 3.2 23 18-43 29-51 (251)
149 1odf_A YGR205W, hypothetical 3 96.6 0.00067 2.3E-08 53.1 1.6 33 25-57 34-73 (290)
150 2zts_A Putative uncharacterize 96.6 0.0014 4.9E-08 47.2 3.2 24 18-44 29-52 (251)
151 4b4t_M 26S protease regulatory 96.6 0.00095 3.2E-08 55.8 2.6 32 24-56 217-248 (434)
152 1g41_A Heat shock protein HSLU 96.6 0.00094 3.2E-08 56.0 2.5 32 24-56 52-83 (444)
153 1r6b_X CLPA protein; AAA+, N-t 96.6 0.00091 3.1E-08 57.4 2.4 32 19-50 485-516 (758)
154 1g8p_A Magnesium-chelatase 38 96.5 0.0007 2.4E-08 51.6 1.5 24 25-48 48-71 (350)
155 2qgz_A Helicase loader, putati 96.5 0.0011 3.8E-08 51.8 2.7 23 23-45 153-175 (308)
156 3pvs_A Replication-associated 96.5 0.0012 4E-08 54.6 2.9 28 23-50 51-78 (447)
157 2eyu_A Twitching motility prot 96.5 0.0017 5.8E-08 49.9 3.5 39 16-57 22-64 (261)
158 1gtv_A TMK, thymidylate kinase 96.5 0.00036 1.2E-08 49.7 -0.3 23 25-47 3-25 (214)
159 1knx_A Probable HPR(Ser) kinas 96.5 0.00083 2.8E-08 54.2 1.8 38 24-63 149-186 (312)
160 2w0m_A SSO2452; RECA, SSPF, un 96.5 0.0017 5.7E-08 46.1 3.2 25 18-45 22-46 (235)
161 2x8a_A Nuclear valosin-contain 96.5 0.0011 3.9E-08 50.9 2.4 26 25-50 47-72 (274)
162 1rz3_A Hypothetical protein rb 96.5 0.00095 3.3E-08 48.3 1.9 32 25-56 25-60 (201)
163 2r44_A Uncharacterized protein 96.5 0.00086 2.9E-08 51.4 1.7 27 24-50 48-74 (331)
164 1sq5_A Pantothenate kinase; P- 96.5 0.0011 3.6E-08 51.7 2.1 33 26-58 84-122 (308)
165 2qby_A CDC6 homolog 1, cell di 96.5 0.001 3.4E-08 50.5 1.9 23 24-46 47-69 (386)
166 4b4t_L 26S protease subunit RP 96.5 0.001 3.5E-08 55.6 2.1 32 24-56 217-248 (437)
167 3hu3_A Transitional endoplasmi 96.4 0.0011 3.9E-08 55.4 2.3 31 24-55 240-270 (489)
168 3u61_B DNA polymerase accessor 96.4 0.0017 5.7E-08 49.5 3.0 32 16-50 45-76 (324)
169 3fdi_A Uncharacterized protein 96.4 0.00079 2.7E-08 49.6 1.1 34 25-62 9-42 (201)
170 1n0w_A DNA repair protein RAD5 96.4 0.0019 6.7E-08 46.5 3.1 24 18-44 23-46 (243)
171 2z4s_A Chromosomal replication 96.4 0.00089 3E-08 54.8 1.5 25 22-46 130-154 (440)
172 2kjq_A DNAA-related protein; s 96.4 0.0017 5.9E-08 45.7 2.7 22 25-46 39-60 (149)
173 1fnn_A CDC6P, cell division co 96.4 0.0014 4.9E-08 50.1 2.3 23 24-46 46-68 (389)
174 3pxg_A Negative regulator of g 96.4 0.0013 4.3E-08 54.2 2.2 23 24-46 203-225 (468)
175 4b4t_J 26S protease regulatory 96.4 0.0014 4.8E-08 54.6 2.3 32 24-56 184-215 (405)
176 1jr3_A DNA polymerase III subu 96.4 0.0012 4E-08 50.6 1.7 25 24-48 40-64 (373)
177 1in4_A RUVB, holliday junction 96.3 0.0012 4E-08 51.6 1.7 27 24-50 53-79 (334)
178 1ojl_A Transcriptional regulat 96.3 0.0024 8.2E-08 49.6 3.4 34 24-57 27-64 (304)
179 3tqc_A Pantothenate kinase; bi 96.3 0.0016 5.5E-08 52.2 2.2 33 25-58 95-134 (321)
180 4b4t_H 26S protease regulatory 96.3 0.0017 5.6E-08 55.2 2.3 33 24-57 245-277 (467)
181 4b4t_I 26S protease regulatory 96.2 0.0019 6.6E-08 54.5 2.5 35 24-59 218-252 (437)
182 1p5z_B DCK, deoxycytidine kina 96.2 0.002 6.8E-08 48.3 2.3 24 25-48 27-50 (263)
183 1cr0_A DNA primase/helicase; R 96.2 0.0029 1E-07 47.9 3.2 26 17-45 33-58 (296)
184 2ocp_A DGK, deoxyguanosine kin 96.2 0.0022 7.7E-08 47.3 2.4 26 25-50 5-30 (241)
185 2gza_A Type IV secretion syste 96.1 0.0031 1E-07 50.4 3.1 23 25-47 178-200 (361)
186 3gmt_A Adenylate kinase; ssgci 96.1 0.0013 4.3E-08 50.8 0.8 30 26-56 12-41 (230)
187 3pxi_A Negative regulator of g 96.1 0.0021 7.1E-08 55.5 2.1 24 23-46 522-545 (758)
188 1svm_A Large T antigen; AAA+ f 96.1 0.0031 1.1E-07 51.4 2.9 34 16-53 166-199 (377)
189 4i1u_A Dephospho-COA kinase; s 96.1 0.004 1.4E-07 47.3 3.3 60 25-93 12-73 (210)
190 2ce7_A Cell division protein F 96.0 0.0024 8.4E-08 53.6 2.2 27 24-50 51-77 (476)
191 2chq_A Replication factor C sm 96.0 0.0031 1.1E-07 46.9 2.5 22 25-46 41-62 (319)
192 1nlf_A Regulatory protein REPA 96.0 0.0038 1.3E-07 47.1 3.0 24 18-44 29-52 (279)
193 3jvv_A Twitching mobility prot 96.0 0.0044 1.5E-07 50.0 3.5 38 17-57 121-162 (356)
194 1sxj_D Activator 1 41 kDa subu 96.0 0.0031 1.1E-07 47.9 2.5 23 25-47 61-83 (353)
195 1iqp_A RFCS; clamp loader, ext 96.0 0.0032 1.1E-07 47.0 2.5 23 25-47 49-71 (327)
196 2ewv_A Twitching motility prot 96.0 0.0045 1.5E-07 49.8 3.5 37 17-56 134-174 (372)
197 3pxi_A Negative regulator of g 96.0 0.0026 8.7E-08 54.9 2.2 23 24-46 203-225 (758)
198 2v9p_A Replication protein E1; 96.0 0.0038 1.3E-07 49.8 2.9 33 15-50 122-154 (305)
199 2fz4_A DNA repair protein RAD2 95.9 0.0035 1.2E-07 46.8 2.5 30 25-54 111-140 (237)
200 3lxx_A GTPase IMAP family memb 95.9 0.0055 1.9E-07 44.9 3.5 43 4-46 11-53 (239)
201 2dyk_A GTP-binding protein; GT 95.9 0.0043 1.5E-07 41.3 2.6 22 25-46 4-25 (161)
202 2vp4_A Deoxynucleoside kinase; 95.9 0.005 1.7E-07 45.4 3.2 25 25-50 23-47 (230)
203 1qvr_A CLPB protein; coiled co 95.9 0.0024 8E-08 56.1 1.6 34 23-56 589-626 (854)
204 1ye8_A Protein THEP1, hypothet 95.9 0.0042 1.5E-07 44.9 2.7 23 25-47 3-25 (178)
205 3te6_A Regulatory protein SIR3 95.9 0.0025 8.7E-08 51.0 1.7 28 15-46 42-69 (318)
206 2axn_A 6-phosphofructo-2-kinas 95.9 0.0039 1.3E-07 52.5 2.8 31 25-56 38-73 (520)
207 1ypw_A Transitional endoplasmi 95.9 0.0048 1.6E-07 54.4 3.4 26 25-50 241-266 (806)
208 1sxj_E Activator 1 40 kDa subu 95.9 0.0031 1.1E-07 48.2 2.0 22 25-46 39-60 (354)
209 2px0_A Flagellar biosynthesis 95.9 0.0066 2.2E-07 47.5 3.8 35 18-56 104-144 (296)
210 3bh0_A DNAB-like replicative h 95.9 0.0054 1.8E-07 47.8 3.3 25 17-44 66-90 (315)
211 1sxj_B Activator 1 37 kDa subu 95.8 0.0041 1.4E-07 46.3 2.5 22 25-46 45-66 (323)
212 3nbx_X ATPase RAVA; AAA+ ATPas 95.8 0.0056 1.9E-07 51.7 3.5 25 24-48 43-67 (500)
213 3kta_A Chromosome segregation 95.8 0.0038 1.3E-07 43.6 2.1 18 26-43 30-47 (182)
214 3cf2_A TER ATPase, transitiona 95.8 0.0064 2.2E-07 54.5 4.0 32 24-56 240-271 (806)
215 3b9q_A Chloroplast SRP recepto 95.8 0.0067 2.3E-07 47.6 3.7 37 17-56 98-138 (302)
216 2ce2_X GTPase HRAS; signaling 95.8 0.0059 2E-07 40.3 2.9 22 24-45 5-26 (166)
217 3m6a_A ATP-dependent protease 95.8 0.0045 1.5E-07 52.1 2.8 32 25-56 111-143 (543)
218 2qen_A Walker-type ATPase; unk 95.8 0.0045 1.5E-07 46.4 2.6 31 24-55 33-63 (350)
219 2dhr_A FTSH; AAA+ protein, hex 95.8 0.005 1.7E-07 52.0 3.1 31 24-55 66-96 (499)
220 1sxj_C Activator 1 40 kDa subu 95.8 0.0044 1.5E-07 47.9 2.5 23 25-47 49-71 (340)
221 4eaq_A DTMP kinase, thymidylat 95.8 0.0029 1E-07 47.3 1.5 23 25-47 29-51 (229)
222 1p9r_A General secretion pathw 95.8 0.0062 2.1E-07 50.3 3.5 38 17-57 165-205 (418)
223 2oap_1 GSPE-2, type II secreti 95.8 0.0045 1.5E-07 52.2 2.7 22 25-46 263-284 (511)
224 3dm5_A SRP54, signal recogniti 95.8 0.0065 2.2E-07 51.0 3.6 32 25-57 103-139 (443)
225 1z2a_A RAS-related protein RAB 95.7 0.0068 2.3E-07 40.4 3.1 23 23-45 6-28 (168)
226 2pt7_A CAG-ALFA; ATPase, prote 95.7 0.005 1.7E-07 48.8 2.6 26 25-50 174-202 (330)
227 1r2q_A RAS-related protein RAB 95.7 0.0079 2.7E-07 40.0 3.3 23 23-45 7-29 (170)
228 3hdt_A Putative kinase; struct 95.7 0.0036 1.2E-07 47.4 1.7 32 24-56 16-47 (223)
229 1ek0_A Protein (GTP-binding pr 95.7 0.0072 2.5E-07 40.2 3.0 23 23-45 4-26 (170)
230 1z0j_A RAB-22, RAS-related pro 95.7 0.0072 2.5E-07 40.4 3.0 24 23-46 7-30 (170)
231 1kao_A RAP2A; GTP-binding prot 95.7 0.0074 2.5E-07 39.9 3.0 23 23-45 4-26 (167)
232 1g16_A RAS-related protein SEC 95.6 0.0076 2.6E-07 40.2 2.9 23 23-45 4-26 (170)
233 1z08_A RAS-related protein RAB 95.6 0.01 3.4E-07 39.8 3.5 23 23-45 7-29 (170)
234 3aez_A Pantothenate kinase; tr 95.6 0.0087 3E-07 47.2 3.7 37 17-57 88-131 (312)
235 2erx_A GTP-binding protein DI- 95.6 0.0094 3.2E-07 39.7 3.4 22 24-45 5-26 (172)
236 1m7b_A RND3/RHOE small GTP-bin 95.6 0.0077 2.6E-07 41.7 3.0 26 20-45 5-30 (184)
237 1yrb_A ATP(GTP)binding protein 95.6 0.011 3.7E-07 43.3 3.9 31 25-56 17-51 (262)
238 1wms_A RAB-9, RAB9, RAS-relate 95.6 0.012 4.1E-07 39.8 3.8 26 20-45 5-30 (177)
239 1u8z_A RAS-related protein RAL 95.6 0.0086 2.9E-07 39.7 3.0 22 24-45 6-27 (168)
240 1ky3_A GTP-binding protein YPT 95.6 0.0084 2.9E-07 40.5 3.0 23 23-45 9-31 (182)
241 2fna_A Conserved hypothetical 95.6 0.0049 1.7E-07 46.2 2.0 32 24-56 32-65 (357)
242 1r6b_X CLPA protein; AAA+, N-t 95.6 0.0055 1.9E-07 52.6 2.5 23 24-46 209-231 (758)
243 2ged_A SR-beta, signal recogni 95.5 0.0069 2.4E-07 41.9 2.6 24 23-46 49-72 (193)
244 3tif_A Uncharacterized ABC tra 95.5 0.0075 2.6E-07 45.4 2.9 33 15-50 27-62 (235)
245 1x6v_B Bifunctional 3'-phospho 95.5 0.0036 1.2E-07 54.6 1.3 39 25-64 55-96 (630)
246 1nrj_B SR-beta, signal recogni 95.5 0.007 2.4E-07 42.9 2.6 24 23-46 13-36 (218)
247 1pzn_A RAD51, DNA repair and r 95.5 0.0085 2.9E-07 47.7 3.3 26 18-46 130-155 (349)
248 2hxs_A RAB-26, RAS-related pro 95.5 0.013 4.3E-07 39.7 3.7 23 23-45 7-29 (178)
249 3llm_A ATP-dependent RNA helic 95.5 0.0081 2.8E-07 44.2 2.9 14 25-38 79-92 (235)
250 2orw_A Thymidine kinase; TMTK, 95.5 0.0081 2.8E-07 43.6 2.8 20 26-45 7-26 (184)
251 3kl4_A SRP54, signal recogniti 95.5 0.0094 3.2E-07 49.7 3.6 30 26-56 101-135 (433)
252 2z43_A DNA repair and recombin 95.5 0.0085 2.9E-07 46.7 3.1 24 19-45 107-130 (324)
253 2cbz_A Multidrug resistance-as 95.4 0.0092 3.2E-07 45.0 3.2 31 17-50 29-62 (237)
254 2nzj_A GTP-binding protein REM 95.4 0.012 4E-07 39.6 3.4 24 23-46 5-28 (175)
255 2i1q_A DNA repair and recombin 95.4 0.0092 3.1E-07 46.0 3.2 24 18-44 97-120 (322)
256 2v3c_C SRP54, signal recogniti 95.4 0.0076 2.6E-07 49.8 2.9 31 25-56 102-137 (432)
257 3q85_A GTP-binding protein REM 95.4 0.0099 3.4E-07 39.9 3.0 22 24-45 4-25 (169)
258 1svi_A GTP-binding protein YSX 95.4 0.0089 3E-07 41.3 2.8 25 22-46 23-47 (195)
259 1vma_A Cell division protein F 95.4 0.011 3.9E-07 46.6 3.7 36 17-56 102-142 (306)
260 2qi9_C Vitamin B12 import ATP- 95.4 0.015 5.1E-07 44.5 4.3 33 17-52 24-58 (249)
261 1a5t_A Delta prime, HOLB; zinc 95.4 0.0063 2.2E-07 47.4 2.2 31 15-48 20-50 (334)
262 2pcj_A ABC transporter, lipopr 95.4 0.0089 3E-07 44.6 2.9 31 17-50 28-61 (224)
263 2og2_A Putative signal recogni 95.4 0.011 3.9E-07 47.9 3.7 37 17-56 155-195 (359)
264 1rj9_A FTSY, signal recognitio 95.4 0.011 3.8E-07 46.5 3.5 24 18-44 101-124 (304)
265 2wji_A Ferrous iron transport 95.4 0.01 3.5E-07 40.6 3.0 22 24-45 5-26 (165)
266 3pqc_A Probable GTP-binding pr 95.4 0.0095 3.2E-07 40.8 2.8 23 24-46 25-47 (195)
267 1mv5_A LMRA, multidrug resista 95.4 0.011 3.7E-07 44.6 3.3 34 16-52 25-61 (243)
268 1qvr_A CLPB protein; coiled co 95.4 0.0052 1.8E-07 54.0 1.7 23 24-46 193-215 (854)
269 1f2t_A RAD50 ABC-ATPase; DNA d 95.3 0.0094 3.2E-07 41.8 2.7 16 26-41 27-42 (149)
270 1v5w_A DMC1, meiotic recombina 95.3 0.011 3.8E-07 46.6 3.5 25 18-45 121-145 (343)
271 1c1y_A RAS-related protein RAP 95.3 0.012 4.1E-07 39.2 3.1 22 24-45 5-26 (167)
272 3tw8_B RAS-related protein RAB 95.3 0.0097 3.3E-07 40.1 2.6 23 23-45 10-32 (181)
273 3gfo_A Cobalt import ATP-bindi 95.3 0.0099 3.4E-07 46.2 3.0 31 17-50 32-65 (275)
274 2cxx_A Probable GTP-binding pr 95.3 0.011 3.6E-07 40.5 2.8 22 24-45 3-24 (190)
275 2b6h_A ADP-ribosylation factor 95.3 0.0099 3.4E-07 41.9 2.7 38 8-45 15-52 (192)
276 1htw_A HI0065; nucleotide-bind 95.3 0.014 4.9E-07 41.7 3.6 31 17-50 31-63 (158)
277 2zej_A Dardarin, leucine-rich 95.3 0.0099 3.4E-07 41.4 2.7 22 24-45 4-25 (184)
278 2wjg_A FEOB, ferrous iron tran 95.3 0.018 6.3E-07 39.4 4.0 22 24-45 9-30 (188)
279 3con_A GTPase NRAS; structural 95.3 0.012 4E-07 40.6 3.0 23 23-45 22-44 (190)
280 1zu4_A FTSY; GTPase, signal re 95.3 0.022 7.5E-07 45.1 4.9 37 16-56 102-143 (320)
281 3bc1_A RAS-related protein RAB 95.3 0.012 4.1E-07 40.0 3.0 23 23-45 12-34 (195)
282 4dsu_A GTPase KRAS, isoform 2B 95.2 0.012 4.2E-07 40.0 3.0 23 23-45 5-27 (189)
283 2lkc_A Translation initiation 95.2 0.012 4.1E-07 39.8 2.9 22 24-45 10-31 (178)
284 2b8t_A Thymidine kinase; deoxy 95.2 0.0099 3.4E-07 45.2 2.7 26 18-46 11-36 (223)
285 1xjc_A MOBB protein homolog; s 95.2 0.0057 1.9E-07 45.0 1.3 21 25-45 7-27 (169)
286 4ag6_A VIRB4 ATPase, type IV s 95.2 0.012 4.2E-07 46.5 3.3 32 25-57 38-72 (392)
287 3k1j_A LON protease, ATP-depen 95.2 0.0094 3.2E-07 50.4 2.8 24 24-47 62-85 (604)
288 1z0f_A RAB14, member RAS oncog 95.2 0.013 4.5E-07 39.4 3.0 24 23-46 16-39 (179)
289 2wsm_A Hydrogenase expression/ 95.2 0.011 3.7E-07 42.1 2.7 31 25-56 33-67 (221)
290 3b6e_A Interferon-induced heli 95.2 0.006 2E-07 42.9 1.3 20 25-44 51-70 (216)
291 4g1u_C Hemin import ATP-bindin 95.2 0.012 4E-07 45.4 3.0 31 17-50 35-68 (266)
292 3clv_A RAB5 protein, putative; 95.2 0.013 4.6E-07 39.8 3.0 22 24-45 9-30 (208)
293 2a9k_A RAS-related protein RAL 95.2 0.013 4.6E-07 39.6 3.0 23 23-45 19-41 (187)
294 2y8e_A RAB-protein 6, GH09086P 95.2 0.013 4.4E-07 39.4 2.9 22 23-44 15-36 (179)
295 2ff7_A Alpha-hemolysin translo 95.2 0.012 4.1E-07 44.7 3.0 33 17-52 33-68 (247)
296 3auy_A DNA double-strand break 95.2 0.0097 3.3E-07 47.2 2.6 17 26-42 29-47 (371)
297 2r6a_A DNAB helicase, replicat 95.1 0.013 4.4E-07 47.8 3.3 25 18-45 202-226 (454)
298 2q6t_A DNAB replication FORK h 95.1 0.012 4.2E-07 47.8 3.2 24 18-44 199-222 (444)
299 3q72_A GTP-binding protein RAD 95.1 0.011 3.9E-07 39.5 2.5 23 24-46 4-26 (166)
300 1g6h_A High-affinity branched- 95.1 0.012 4.3E-07 44.7 3.0 31 17-50 31-64 (257)
301 2pze_A Cystic fibrosis transme 95.1 0.013 4.4E-07 43.9 3.0 31 17-50 32-65 (229)
302 2d2e_A SUFC protein; ABC-ATPas 95.1 0.014 4.7E-07 44.3 3.2 26 17-45 27-52 (250)
303 2ghi_A Transport protein; mult 95.1 0.014 4.7E-07 44.7 3.2 33 17-52 44-78 (260)
304 2xxa_A Signal recognition part 95.1 0.017 5.9E-07 47.7 4.0 31 25-56 103-139 (433)
305 3e70_C DPA, signal recognition 95.1 0.017 5.7E-07 46.1 3.7 27 16-45 126-152 (328)
306 2bme_A RAB4A, RAS-related prot 95.1 0.014 4.8E-07 39.8 2.9 23 23-45 11-33 (186)
307 2fn4_A P23, RAS-related protei 95.1 0.017 5.7E-07 38.9 3.2 23 23-45 10-32 (181)
308 2il1_A RAB12; G-protein, GDP, 95.0 0.019 6.4E-07 40.2 3.5 26 20-45 24-49 (192)
309 2f9l_A RAB11B, member RAS onco 95.0 0.016 5.3E-07 40.8 3.1 23 23-45 6-28 (199)
310 2zu0_C Probable ATP-dependent 95.0 0.015 5.3E-07 44.6 3.3 26 17-45 44-69 (267)
311 3b85_A Phosphate starvation-in 95.0 0.011 3.8E-07 43.9 2.5 39 3-44 5-44 (208)
312 1ji0_A ABC transporter; ATP bi 95.0 0.014 4.8E-07 44.0 3.0 31 17-50 30-63 (240)
313 2hf9_A Probable hydrogenase ni 95.0 0.009 3.1E-07 42.7 1.9 21 25-45 41-61 (226)
314 1sgw_A Putative ABC transporte 95.0 0.013 4.3E-07 44.0 2.7 31 17-50 33-66 (214)
315 1b0u_A Histidine permease; ABC 95.0 0.013 4.5E-07 44.8 2.9 31 17-50 30-63 (262)
316 1oix_A RAS-related protein RAB 95.0 0.013 4.4E-07 41.4 2.6 24 23-46 30-53 (191)
317 2oil_A CATX-8, RAS-related pro 95.0 0.016 5.4E-07 40.2 3.0 23 23-45 26-48 (193)
318 1vpl_A ABC transporter, ATP-bi 95.0 0.015 5.2E-07 44.6 3.2 31 17-50 39-72 (256)
319 1r8s_A ADP-ribosylation factor 95.0 0.015 5.1E-07 38.8 2.7 21 24-44 2-22 (164)
320 1upt_A ARL1, ADP-ribosylation 95.0 0.015 5.2E-07 38.9 2.8 23 23-45 8-30 (171)
321 1mh1_A RAC1; GTP-binding, GTPa 95.0 0.017 5.8E-07 39.2 3.0 23 23-45 6-28 (186)
322 3kkq_A RAS-related protein M-R 94.9 0.017 5.8E-07 39.4 3.0 23 23-45 19-41 (183)
323 3f9v_A Minichromosome maintena 94.9 0.0079 2.7E-07 51.4 1.6 27 24-50 329-355 (595)
324 2i3b_A HCR-ntpase, human cance 94.9 0.014 4.8E-07 42.8 2.7 21 25-45 4-24 (189)
325 2vhj_A Ntpase P4, P4; non- hyd 94.9 0.014 4.8E-07 47.6 3.0 21 25-45 126-146 (331)
326 1ksh_A ARF-like protein 2; sma 94.9 0.019 6.5E-07 39.4 3.2 24 23-46 19-42 (186)
327 2yz2_A Putative ABC transporte 94.9 0.016 5.6E-07 44.3 3.2 34 16-52 30-66 (266)
328 2f1r_A Molybdopterin-guanine d 94.9 0.0075 2.6E-07 43.8 1.2 22 25-46 5-26 (171)
329 3p32_A Probable GTPase RV1496/ 94.9 0.077 2.6E-06 41.8 7.1 37 25-62 82-123 (355)
330 2efe_B Small GTP-binding prote 94.9 0.023 7.8E-07 38.5 3.5 23 23-45 13-35 (181)
331 1bif_A 6-phosphofructo-2-kinas 94.9 0.0042 1.4E-07 50.9 -0.2 23 25-47 42-64 (469)
332 2ixe_A Antigen peptide transpo 94.9 0.016 5.5E-07 44.6 3.0 33 17-52 43-78 (271)
333 1moz_A ARL1, ADP-ribosylation 94.9 0.014 4.8E-07 39.7 2.4 22 23-44 19-40 (183)
334 2onk_A Molybdate/tungstate ABC 94.8 0.018 6.2E-07 43.7 3.2 28 20-50 25-55 (240)
335 1np6_A Molybdopterin-guanine d 94.8 0.014 4.7E-07 42.5 2.5 21 25-45 9-29 (174)
336 3cf2_A TER ATPase, transitiona 94.8 0.015 5.1E-07 52.1 3.1 35 24-59 513-547 (806)
337 3bgw_A DNAB-like replicative h 94.8 0.017 6E-07 47.5 3.3 25 17-44 195-219 (444)
338 2g6b_A RAS-related protein RAB 94.8 0.019 6.7E-07 38.8 3.0 23 23-45 11-33 (180)
339 1lw7_A Transcriptional regulat 94.8 0.014 4.7E-07 46.1 2.5 23 25-47 173-195 (365)
340 2nq2_C Hypothetical ABC transp 94.8 0.018 6.1E-07 44.0 3.1 31 17-50 29-62 (253)
341 2j37_W Signal recognition part 94.8 0.022 7.4E-07 48.3 3.9 32 24-56 103-139 (504)
342 2bov_A RAla, RAS-related prote 94.8 0.022 7.6E-07 39.5 3.3 24 22-45 14-37 (206)
343 2r2a_A Uncharacterized protein 94.7 0.027 9.1E-07 41.8 3.9 19 25-43 8-26 (199)
344 1z06_A RAS-related protein RAB 94.7 0.021 7.3E-07 39.5 3.2 24 22-45 20-43 (189)
345 2gj8_A MNME, tRNA modification 94.7 0.018 6.2E-07 39.9 2.8 22 24-45 6-27 (172)
346 1x3s_A RAS-related protein RAB 94.7 0.02 7E-07 39.2 3.0 23 23-45 16-38 (195)
347 1ypw_A Transitional endoplasmi 94.7 0.0067 2.3E-07 53.5 0.7 34 25-59 514-547 (806)
348 3t5g_A GTP-binding protein RHE 94.7 0.028 9.6E-07 38.2 3.7 23 22-44 6-28 (181)
349 2p5s_A RAS and EF-hand domain 94.7 0.02 7E-07 40.1 3.1 23 23-45 29-51 (199)
350 2ihy_A ABC transporter, ATP-bi 94.7 0.018 6.2E-07 44.7 3.0 31 17-50 45-78 (279)
351 2a5j_A RAS-related protein RAB 94.7 0.02 6.9E-07 39.8 3.0 23 23-45 22-44 (191)
352 1zbd_A Rabphilin-3A; G protein 94.7 0.024 8.1E-07 39.6 3.4 24 22-45 8-31 (203)
353 1pui_A ENGB, probable GTP-bind 94.7 0.0093 3.2E-07 41.9 1.2 22 25-46 29-50 (210)
354 2olj_A Amino acid ABC transpor 94.7 0.018 6E-07 44.5 2.9 31 17-50 48-81 (263)
355 3bwd_D RAC-like GTP-binding pr 94.7 0.018 6E-07 39.1 2.6 23 23-45 9-31 (182)
356 1xx6_A Thymidine kinase; NESG, 94.7 0.017 5.7E-07 42.8 2.7 26 18-46 7-32 (191)
357 3tkl_A RAS-related protein RAB 94.7 0.021 7.3E-07 39.2 3.0 23 23-45 17-39 (196)
358 1vg8_A RAS-related protein RAB 94.7 0.021 7.2E-07 39.7 3.0 23 23-45 9-31 (207)
359 1zj6_A ADP-ribosylation factor 94.7 0.024 8E-07 39.2 3.2 23 23-45 17-39 (187)
360 2zr9_A Protein RECA, recombina 94.7 0.018 6.3E-07 46.0 3.0 24 18-44 60-83 (349)
361 1m8p_A Sulfate adenylyltransfe 94.7 0.0052 1.8E-07 52.5 -0.2 23 25-47 399-421 (573)
362 3nh6_A ATP-binding cassette SU 94.6 0.013 4.6E-07 46.4 2.1 34 16-52 77-113 (306)
363 2gf9_A RAS-related protein RAB 94.6 0.022 7.5E-07 39.4 3.0 27 18-45 19-45 (189)
364 1w5s_A Origin recognition comp 94.6 0.014 4.8E-07 45.0 2.2 23 24-46 52-76 (412)
365 2h17_A ADP-ribosylation factor 94.6 0.022 7.6E-07 39.2 3.0 24 23-46 22-45 (181)
366 2yhs_A FTSY, cell division pro 94.6 0.024 8.2E-07 48.5 3.7 38 16-56 290-331 (503)
367 3qf4_B Uncharacterized ABC tra 94.6 0.03 1E-06 47.4 4.3 34 16-52 378-414 (598)
368 2bcg_Y Protein YP2, GTP-bindin 94.6 0.022 7.4E-07 40.0 2.9 23 23-45 9-31 (206)
369 2atv_A RERG, RAS-like estrogen 94.6 0.023 7.7E-07 39.7 3.0 23 23-45 29-51 (196)
370 2fh5_B SR-beta, signal recogni 94.6 0.019 6.4E-07 40.5 2.6 22 24-45 9-30 (214)
371 2gxq_A Heat resistant RNA depe 94.6 0.019 6.6E-07 40.2 2.6 14 25-38 41-54 (207)
372 4a1f_A DNAB helicase, replicat 94.6 0.021 7.3E-07 46.0 3.2 26 17-45 44-69 (338)
373 3b60_A Lipid A export ATP-bind 94.6 0.031 1.1E-06 47.0 4.3 33 17-52 367-402 (582)
374 3qf7_A RAD50; ABC-ATPase, ATPa 94.6 0.018 6.2E-07 46.0 2.7 16 27-42 28-43 (365)
375 1g8f_A Sulfate adenylyltransfe 94.6 0.012 4.1E-07 50.1 1.7 24 25-48 398-421 (511)
376 3oes_A GTPase rhebl1; small GT 94.6 0.024 8.1E-07 39.9 3.0 28 18-45 20-47 (201)
377 4edh_A DTMP kinase, thymidylat 94.5 0.011 3.8E-07 44.1 1.3 23 25-47 9-31 (213)
378 1j8m_F SRP54, signal recogniti 94.5 0.03 1E-06 43.8 3.9 30 26-56 102-136 (297)
379 2o52_A RAS-related protein RAB 94.5 0.025 8.7E-07 39.9 3.1 23 23-45 26-48 (200)
380 2atx_A Small GTP binding prote 94.5 0.037 1.3E-06 38.3 3.9 28 18-45 14-41 (194)
381 2gks_A Bifunctional SAT/APS ki 94.5 0.0093 3.2E-07 50.6 0.9 31 25-56 375-410 (546)
382 2fg5_A RAB-22B, RAS-related pr 94.4 0.03 1E-06 39.0 3.4 24 22-45 23-46 (192)
383 2qu8_A Putative nucleolar GTP- 94.4 0.022 7.7E-07 41.1 2.8 23 23-45 30-52 (228)
384 1u94_A RECA protein, recombina 94.4 0.02 6.9E-07 46.1 2.7 25 18-45 62-86 (356)
385 3hr8_A Protein RECA; alpha and 94.4 0.024 8.3E-07 45.9 3.2 25 18-45 60-84 (356)
386 2q3h_A RAS homolog gene family 94.4 0.03 1E-06 39.0 3.2 23 23-45 21-43 (201)
387 1hv8_A Putative ATP-dependent 94.4 0.025 8.5E-07 42.3 3.0 18 24-41 46-63 (367)
388 1fzq_A ADP-ribosylation factor 94.4 0.021 7.3E-07 39.6 2.5 24 23-46 17-40 (181)
389 2gf0_A GTP-binding protein DI- 94.4 0.028 9.5E-07 38.7 3.0 23 23-45 9-31 (199)
390 4bas_A ADP-ribosylation factor 94.4 0.031 1E-06 38.5 3.2 30 17-46 12-41 (199)
391 3b5x_A Lipid A export ATP-bind 94.3 0.036 1.2E-06 46.6 4.2 33 17-52 367-402 (582)
392 2iwr_A Centaurin gamma 1; ANK 94.3 0.018 6.3E-07 39.1 2.0 23 23-45 8-30 (178)
393 1zd9_A ADP-ribosylation factor 94.3 0.028 9.7E-07 39.0 3.0 23 23-45 23-45 (188)
394 3iqw_A Tail-anchored protein t 94.3 0.041 1.4E-06 43.8 4.3 48 1-55 1-53 (334)
395 3ihw_A Centg3; RAS, centaurin, 94.3 0.028 9.7E-07 39.3 3.0 23 23-45 21-43 (184)
396 3lda_A DNA repair protein RAD5 94.3 0.024 8.3E-07 46.4 3.0 23 18-43 177-199 (400)
397 1vec_A ATP-dependent RNA helic 94.3 0.025 8.5E-07 39.8 2.7 16 25-40 43-58 (206)
398 2fu5_C RAS-related protein RAB 94.3 0.017 5.9E-07 39.4 1.8 24 22-45 8-31 (183)
399 2h57_A ADP-ribosylation factor 94.3 0.023 7.7E-07 39.4 2.4 24 23-46 22-45 (190)
400 1q57_A DNA primase/helicase; d 94.3 0.02 6.7E-07 47.0 2.4 24 18-44 241-264 (503)
401 1rif_A DAR protein, DNA helica 94.3 0.024 8.1E-07 42.6 2.6 20 25-44 131-150 (282)
402 3c5c_A RAS-like protein 12; GD 94.3 0.032 1.1E-06 38.9 3.2 24 22-45 21-44 (187)
403 2j1l_A RHO-related GTP-binding 94.3 0.03 1E-06 40.0 3.1 24 22-45 34-57 (214)
404 3cph_A RAS-related protein SEC 94.2 0.028 9.7E-07 39.2 2.9 23 23-45 21-43 (213)
405 1m2o_B GTP-binding protein SAR 94.2 0.024 8.2E-07 39.8 2.5 22 24-45 25-46 (190)
406 2z0m_A 337AA long hypothetical 94.2 0.025 8.6E-07 41.9 2.6 20 25-44 34-53 (337)
407 3v9p_A DTMP kinase, thymidylat 94.2 0.012 4E-07 44.8 0.8 24 25-48 28-51 (227)
408 3reg_A RHO-like small GTPase; 94.2 0.032 1.1E-06 38.7 3.0 25 21-45 22-46 (194)
409 3sop_A Neuronal-specific septi 94.2 0.03 1E-06 43.1 3.1 21 24-44 4-24 (270)
410 2bbs_A Cystic fibrosis transme 94.1 0.03 1E-06 43.8 3.1 31 17-50 62-95 (290)
411 2x77_A ADP-ribosylation factor 94.1 0.026 8.8E-07 38.9 2.4 23 23-45 23-45 (189)
412 2ga8_A Hypothetical 39.9 kDa p 94.1 0.013 4.4E-07 48.2 1.0 25 24-48 26-50 (359)
413 2fv8_A H6, RHO-related GTP-bin 94.1 0.031 1.1E-06 39.5 2.9 23 23-45 26-48 (207)
414 3dz8_A RAS-related protein RAB 94.1 0.037 1.3E-06 38.4 3.2 23 23-45 24-46 (191)
415 2r8r_A Sensor protein; KDPD, P 94.1 0.053 1.8E-06 42.0 4.4 41 23-64 7-58 (228)
416 1z6t_A APAF-1, apoptotic prote 94.1 0.028 9.7E-07 46.1 3.0 21 25-45 150-170 (591)
417 3tmk_A Thymidylate kinase; pho 94.1 0.016 5.5E-07 43.7 1.4 24 25-48 8-31 (216)
418 2oca_A DAR protein, ATP-depend 94.1 0.028 9.7E-07 45.2 2.9 22 24-45 130-151 (510)
419 3lv8_A DTMP kinase, thymidylat 94.1 0.015 5.1E-07 44.4 1.2 23 25-47 30-52 (236)
420 1gwn_A RHO-related GTP-binding 94.1 0.026 9E-07 40.5 2.5 25 21-45 27-51 (205)
421 3qf4_A ABC transporter, ATP-bi 94.1 0.034 1.1E-06 47.1 3.5 33 17-52 367-402 (587)
422 3iuy_A Probable ATP-dependent 94.1 0.024 8.1E-07 40.8 2.2 15 25-39 60-74 (228)
423 3cbq_A GTP-binding protein REM 94.1 0.032 1.1E-06 39.5 2.8 24 21-44 22-45 (195)
424 2fwr_A DNA repair protein RAD2 94.0 0.022 7.5E-07 45.4 2.2 24 25-48 111-134 (472)
425 3t1o_A Gliding protein MGLA; G 94.0 0.066 2.3E-06 36.4 4.3 29 20-48 12-40 (198)
426 2f7s_A C25KG, RAS-related prot 94.0 0.041 1.4E-06 38.8 3.3 28 17-45 21-48 (217)
427 2gco_A H9, RHO-related GTP-bin 94.0 0.044 1.5E-06 38.5 3.4 26 20-45 23-48 (201)
428 3qks_A DNA double-strand break 94.0 0.031 1.1E-06 40.8 2.7 17 26-42 27-43 (203)
429 1f6b_A SAR1; gtpases, N-termin 93.9 0.027 9.3E-07 39.9 2.3 22 24-45 27-48 (198)
430 3lxw_A GTPase IMAP family memb 93.9 0.04 1.4E-06 41.2 3.3 22 24-45 23-44 (247)
431 2xtp_A GTPase IMAP family memb 93.9 0.033 1.1E-06 41.1 2.8 23 23-45 23-45 (260)
432 1xp8_A RECA protein, recombina 93.9 0.029 9.8E-07 45.4 2.6 21 25-45 77-97 (366)
433 2pl3_A Probable ATP-dependent 93.9 0.033 1.1E-06 40.3 2.6 14 25-38 65-78 (236)
434 1e9r_A Conjugal transfer prote 93.9 0.03 1E-06 44.6 2.7 32 24-56 55-89 (437)
435 3ld9_A DTMP kinase, thymidylat 93.8 0.019 6.3E-07 43.7 1.3 24 25-48 24-47 (223)
436 2p67_A LAO/AO transport system 93.8 0.047 1.6E-06 42.9 3.7 32 26-58 60-96 (341)
437 1qde_A EIF4A, translation init 93.8 0.028 9.6E-07 40.1 2.2 14 25-38 54-67 (224)
438 2ew1_A RAS-related protein RAB 93.8 0.038 1.3E-06 39.6 2.9 23 23-45 27-49 (201)
439 3cr8_A Sulfate adenylyltranfer 93.8 0.012 4.2E-07 50.2 0.3 27 18-47 368-394 (552)
440 4gzl_A RAS-related C3 botulinu 93.8 0.039 1.3E-06 39.1 2.9 22 23-44 31-52 (204)
441 3llu_A RAS-related GTP-binding 93.8 0.042 1.4E-06 38.5 3.0 25 23-47 21-45 (196)
442 4dhe_A Probable GTP-binding pr 93.7 0.021 7.3E-07 40.4 1.4 30 17-46 24-53 (223)
443 2qnr_A Septin-2, protein NEDD5 93.7 0.032 1.1E-06 43.3 2.6 24 21-44 17-40 (301)
444 2yc2_C IFT27, small RAB-relate 93.7 0.018 6E-07 39.9 0.9 24 22-45 20-43 (208)
445 3pey_A ATP-dependent RNA helic 93.7 0.034 1.2E-06 42.0 2.6 16 25-40 47-62 (395)
446 2cjw_A GTP-binding protein GEM 93.7 0.038 1.3E-06 39.0 2.7 22 23-44 7-28 (192)
447 1t6n_A Probable ATP-dependent 93.7 0.037 1.3E-06 39.5 2.6 17 25-41 54-70 (220)
448 3cpj_B GTP-binding protein YPT 93.7 0.044 1.5E-06 39.2 3.1 24 22-45 13-36 (223)
449 1u0j_A DNA replication protein 93.7 0.033 1.1E-06 43.9 2.5 34 11-46 94-128 (267)
450 1ls1_A Signal recognition part 93.7 0.039 1.3E-06 42.9 2.9 36 18-56 97-136 (295)
451 1h65_A Chloroplast outer envel 93.6 0.047 1.6E-06 40.9 3.2 24 23-46 40-63 (270)
452 2hup_A RAS-related protein RAB 93.6 0.056 1.9E-06 38.2 3.4 24 22-45 29-52 (201)
453 3qkt_A DNA double-strand break 93.6 0.038 1.3E-06 43.3 2.7 17 26-42 27-43 (339)
454 2pjz_A Hypothetical protein ST 93.5 0.053 1.8E-06 41.7 3.4 29 19-50 30-60 (263)
455 1z47_A CYSA, putative ABC-tran 93.5 0.046 1.6E-06 44.3 3.2 30 18-50 40-72 (355)
456 3fvq_A Fe(3+) IONS import ATP- 93.5 0.043 1.5E-06 44.6 3.0 32 16-50 27-61 (359)
457 1tf7_A KAIC; homohexamer, hexa 93.5 0.043 1.5E-06 45.5 3.0 23 17-42 37-59 (525)
458 1nij_A Hypothetical protein YJ 93.5 0.063 2.2E-06 41.8 3.8 20 26-45 8-27 (318)
459 2j0v_A RAC-like GTP-binding pr 93.5 0.048 1.6E-06 38.3 2.9 24 22-45 9-32 (212)
460 4tmk_A Protein (thymidylate ki 93.4 0.023 7.8E-07 42.5 1.2 23 25-47 6-28 (213)
461 2npi_A Protein CLP1; CLP1-PCF1 93.4 0.041 1.4E-06 45.8 2.8 36 17-55 136-176 (460)
462 2www_A Methylmalonic aciduria 93.4 0.059 2E-06 42.7 3.6 20 25-44 77-96 (349)
463 3ly5_A ATP-dependent RNA helic 93.3 0.03 1E-06 42.0 1.7 15 25-39 94-108 (262)
464 1tf7_A KAIC; homohexamer, hexa 93.3 0.048 1.6E-06 45.2 3.1 24 18-44 280-303 (525)
465 3io5_A Recombination and repai 93.3 0.032 1.1E-06 45.6 2.0 26 16-44 25-50 (333)
466 3rlf_A Maltose/maltodextrin im 93.3 0.049 1.7E-06 44.7 3.1 31 17-50 27-60 (381)
467 3tui_C Methionine import ATP-b 93.3 0.049 1.7E-06 44.5 3.1 32 16-50 51-85 (366)
468 2ffh_A Protein (FFH); SRP54, s 93.3 0.068 2.3E-06 44.4 3.9 35 18-56 97-136 (425)
469 3h1t_A Type I site-specific re 93.2 0.027 9.1E-07 46.6 1.4 21 25-45 201-221 (590)
470 3q3j_B RHO-related GTP-binding 93.2 0.057 2E-06 38.7 3.0 24 22-45 27-50 (214)
471 3rc3_A ATP-dependent RNA helic 93.2 0.047 1.6E-06 47.6 3.0 19 25-43 158-176 (677)
472 1g29_1 MALK, maltose transport 93.2 0.055 1.9E-06 43.9 3.2 31 17-50 27-60 (372)
473 3fe2_A Probable ATP-dependent 93.2 0.046 1.6E-06 40.0 2.5 15 24-38 68-82 (242)
474 1e69_A Chromosome segregation 93.2 0.044 1.5E-06 42.5 2.5 18 26-43 28-45 (322)
475 3def_A T7I23.11 protein; chlor 93.2 0.06 2.1E-06 40.3 3.2 24 23-46 37-60 (262)
476 3bor_A Human initiation factor 93.2 0.032 1.1E-06 40.8 1.6 14 25-38 70-83 (237)
477 3gd7_A Fusion complex of cysti 93.1 0.051 1.8E-06 44.5 3.0 32 16-50 44-77 (390)
478 3t5d_A Septin-7; GTP-binding p 93.1 0.055 1.9E-06 40.7 2.9 21 23-43 9-29 (274)
479 2it1_A 362AA long hypothetical 93.1 0.057 1.9E-06 43.8 3.1 31 17-50 27-60 (362)
480 1wrb_A DJVLGB; RNA helicase, D 93.0 0.053 1.8E-06 39.7 2.6 14 25-38 63-76 (253)
481 2qag_C Septin-7; cell cycle, c 93.0 0.049 1.7E-06 44.9 2.7 27 19-45 28-54 (418)
482 2yyz_A Sugar ABC transporter, 93.0 0.058 2E-06 43.7 3.1 31 17-50 27-60 (359)
483 3of5_A Dethiobiotin synthetase 93.0 0.032 1.1E-06 41.9 1.5 23 24-46 6-29 (228)
484 1s2m_A Putative ATP-dependent 93.0 0.052 1.8E-06 41.6 2.6 16 25-40 61-76 (400)
485 3dkp_A Probable ATP-dependent 93.0 0.045 1.6E-06 39.7 2.2 14 25-38 69-82 (245)
486 4djt_A GTP-binding nuclear pro 93.0 0.03 1E-06 39.5 1.2 24 22-45 11-34 (218)
487 1q0u_A Bstdead; DEAD protein, 93.0 0.04 1.4E-06 39.5 1.8 14 25-38 44-57 (219)
488 3oiy_A Reverse gyrase helicase 92.9 0.043 1.5E-06 42.8 2.1 17 24-40 38-54 (414)
489 3fht_A ATP-dependent RNA helic 92.9 0.054 1.9E-06 41.4 2.6 15 25-39 67-81 (412)
490 2g3y_A GTP-binding protein GEM 92.9 0.074 2.5E-06 39.0 3.3 23 23-45 38-60 (211)
491 2qm8_A GTPase/ATPase; G protei 92.9 0.11 3.9E-06 40.9 4.6 25 17-44 53-77 (337)
492 4a82_A Cystic fibrosis transme 92.9 0.042 1.4E-06 46.3 2.1 33 17-52 365-400 (578)
493 1v43_A Sugar-binding transport 92.9 0.063 2.2E-06 43.7 3.1 31 17-50 35-68 (372)
494 2va8_A SSO2462, SKI2-type heli 92.9 0.052 1.8E-06 46.0 2.6 15 25-39 49-63 (715)
495 2yl4_A ATP-binding cassette SU 92.8 0.054 1.8E-06 45.7 2.7 33 17-52 368-403 (595)
496 4f4c_A Multidrug resistance pr 92.8 0.065 2.2E-06 49.7 3.4 37 14-53 1100-1139(1321)
497 2v6i_A RNA helicase; membrane, 92.8 0.034 1.2E-06 44.9 1.4 16 24-39 4-19 (431)
498 3d31_A Sulfate/molybdate ABC t 92.7 0.049 1.7E-06 43.9 2.2 31 17-50 24-57 (348)
499 3ber_A Probable ATP-dependent 92.6 0.064 2.2E-06 39.8 2.6 15 25-39 83-97 (249)
500 1qhl_A Protein (cell division 92.6 0.025 8.7E-07 43.0 0.3 18 26-43 31-48 (227)
No 1
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=99.98 E-value=4.1e-33 Score=227.54 Aligned_cols=87 Identities=29% Similarity=0.393 Sum_probs=84.6
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCceecCCCCHHHhcCCCeeeecccCCCCccCHHHHHHHHHHH
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLLDFLDPNTRFTVVDYRNRALKH 104 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLid~ldp~e~ySv~~F~~~A~~~ 104 (115)
++|+||||||||+||++||++++++| ||+|||||||+|+||||||+++|+++|||||||+++|++.||+++|+++|.++
T Consensus 6 i~i~GptgsGKt~la~~La~~~~~~i-is~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~a~~~ 84 (322)
T 3exa_A 6 VAIVGPTAVGKTKTSVMLAKRLNGEV-ISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDLATPL 84 (322)
T ss_dssp EEEECCTTSCHHHHHHHHHHTTTEEE-EECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHHHHHH
T ss_pred EEEECCCcCCHHHHHHHHHHhCccce-eecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHHHHHH
Confidence 56899999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhhcc
Q psy7554 105 TGLKVDLT 112 (115)
Q Consensus 105 I~~i~~~~ 112 (115)
|++++++.
T Consensus 85 i~~i~~~g 92 (322)
T 3exa_A 85 ITEIHERG 92 (322)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhCC
Confidence 99999873
No 2
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=99.97 E-value=6e-33 Score=225.99 Aligned_cols=86 Identities=26% Similarity=0.324 Sum_probs=84.1
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCceecCCCCHHHhcCCCeeeecccCCCCccCHHHHHHHHHHH
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLLDFLDPNTRFTVVDYRNRALKH 104 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLid~ldp~e~ySv~~F~~~A~~~ 104 (115)
++|+||||||||+||++||++++++| ||+|||||||+|+||||||+++|+++|||||+|+++|++.||+++|+++|.++
T Consensus 13 i~i~GptgsGKt~la~~La~~~~~~i-is~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~~e~~s~~~f~~~a~~~ 91 (316)
T 3foz_A 13 IFLMGPTASGKTALAIELRKILPVEL-ISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAYSAADFRRDALAE 91 (316)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSCEEE-EECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHHHHH
T ss_pred EEEECCCccCHHHHHHHHHHhCCCcE-EecccccccccccccCCCCCHHHHcCCCEEEeccCCccccccHHHHHHHHHHH
Confidence 46899999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhhc
Q psy7554 105 TGLKVDL 111 (115)
Q Consensus 105 I~~i~~~ 111 (115)
|++++++
T Consensus 92 i~~i~~~ 98 (316)
T 3foz_A 92 MADITAA 98 (316)
T ss_dssp HHHHHHT
T ss_pred HHHHHhC
Confidence 9999887
No 3
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=99.97 E-value=1.2e-32 Score=225.43 Aligned_cols=86 Identities=29% Similarity=0.364 Sum_probs=83.8
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCceecCCCCHHHhcCCCeeeecccCC-CCccCHHHHHHHHHH
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLLDFLDP-NTRFTVVDYRNRALK 103 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLid~ldp-~e~ySv~~F~~~A~~ 103 (115)
++|+||||||||+||++||++++++| ||+|||||||+|+||||||+++|++++||||+|+++| .+.|++++|+++|.+
T Consensus 43 IvI~GPTgsGKTtLa~~LA~~l~~ei-Is~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~~~a~~ 121 (339)
T 3a8t_A 43 LVLMGATGTGKSRLSIDLAAHFPLEV-INSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFRSLAGK 121 (339)
T ss_dssp EEEECSTTSSHHHHHHHHHTTSCEEE-EECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCcE-EcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHHHHHHH
Confidence 56899999999999999999999999 9999999999999999999999999999999999999 899999999999999
Q ss_pred HHhhhhhc
Q psy7554 104 HTGLKVDL 111 (115)
Q Consensus 104 ~I~~i~~~ 111 (115)
+|++++++
T Consensus 122 ~i~~i~~~ 129 (339)
T 3a8t_A 122 AVSEITGR 129 (339)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99999876
No 4
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=99.97 E-value=4.2e-31 Score=221.07 Aligned_cols=86 Identities=20% Similarity=0.245 Sum_probs=84.1
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCceecCCCCHHHhcCCCeeeecccCCCCccCHHHHHHHHHHH
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLLDFLDPNTRFTVVDYRNRALKH 104 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLid~ldp~e~ySv~~F~~~A~~~ 104 (115)
++|+||||||||+||.+||++++++| ||+|||||||+|+||||||+.+|+.+|||||+|++++.+.||+++|.++|.++
T Consensus 5 i~i~GptgsGKttla~~La~~~~~~i-is~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a~~~ 83 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSIQLAQKFNGEV-INSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETECMNA 83 (409)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHTEEE-EECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHHHHH
T ss_pred EEEECcchhhHHHHHHHHHHHCCCeE-eecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHHHHH
Confidence 45899999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhhc
Q psy7554 105 TGLKVDL 111 (115)
Q Consensus 105 I~~i~~~ 111 (115)
|++++++
T Consensus 84 i~~i~~~ 90 (409)
T 3eph_A 84 IEDIHRR 90 (409)
T ss_dssp HHHHHTT
T ss_pred HHHHHhc
Confidence 9999987
No 5
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=99.94 E-value=1.4e-27 Score=193.92 Aligned_cols=86 Identities=21% Similarity=0.291 Sum_probs=83.7
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCceecCCCCHHHhcCCCeeeecccCCCCccCHHHHHHHHHHH
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLLDFLDPNTRFTVVDYRNRALKH 104 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLid~ldp~e~ySv~~F~~~A~~~ 104 (115)
++|+||||||||+||..||+++++++ |++||+|+||+|+|||+||+.+|++++||||+|+++|.+.|++++|++.+.++
T Consensus 8 i~i~GptGsGKTtla~~La~~l~~~i-is~Ds~qvy~~~~igTakp~~~e~~gvph~lid~~~~~~~~~~~~F~~~a~~~ 86 (323)
T 3crm_A 8 IFLMGPTAAGKTDLAMALADALPCEL-ISVDSALIYRGMDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFRADALAA 86 (323)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSCEEE-EEECTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcE-EeccchhhhcCCCcccCCCCHHHHcCCCEEEeeccCcccccCHHHHHHHHHHH
Confidence 56899999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhhc
Q psy7554 105 TGLKVDL 111 (115)
Q Consensus 105 I~~i~~~ 111 (115)
|++++++
T Consensus 87 i~~i~~~ 93 (323)
T 3crm_A 87 MAKATAR 93 (323)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 9999876
No 6
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=99.93 E-value=1.9e-26 Score=188.43 Aligned_cols=86 Identities=27% Similarity=0.372 Sum_probs=83.2
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCceecCCCCHHHhcCCCeeeecccCCCCccCHHHHHHHHHHH
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLLDFLDPNTRFTVVDYRNRALKH 104 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLid~ldp~e~ySv~~F~~~A~~~ 104 (115)
++|+||||||||+||.+||+.++++| ||+||+||||+|+|+|+||+.+|++++||||+|++++.+.|++++|.+.+.+.
T Consensus 10 I~I~GptgSGKTtla~~La~~l~~~i-is~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~di~~~~~~~~~~dF~~~a~~~ 88 (340)
T 3d3q_A 10 IVIVGPTASGKTELSIEVAKKFNGEI-ISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDASFSAYEFKKRAEKY 88 (340)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTEEE-EECCSSTTBTTCCTTTTCCCTTTTTTCCEESSSCBCTTSCCCHHHHHHHHHHH
T ss_pred EEEECCCcCcHHHHHHHHHHHcCCce-eccccccccccccccccCCCHHHHHHHHHHHHHHhCCccccCHHHHHHHHHHH
Confidence 66899999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhhc
Q psy7554 105 TGLKVDL 111 (115)
Q Consensus 105 I~~i~~~ 111 (115)
++++..+
T Consensus 89 i~~i~~~ 95 (340)
T 3d3q_A 89 IKDITRR 95 (340)
T ss_dssp HHHHHHT
T ss_pred HHHHHhC
Confidence 9988764
No 7
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=99.83 E-value=2.7e-21 Score=148.32 Aligned_cols=85 Identities=7% Similarity=-0.070 Sum_probs=80.5
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCceecCCCCHHHhcCCCeeeecccCCCC-ccCHHHHHHHHHH
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLLDFLDPNT-RFTVVDYRNRALK 103 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLid~ldp~e-~ySv~~F~~~A~~ 103 (115)
++|+||+|||||+||..||+.++.++ |+.|++|+|++++++|++|+.+|+.+++||+++..+|.+ .|++..|.+.+.+
T Consensus 4 i~I~G~~GSGKSTla~~La~~~~~~~-i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 82 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQETGWPV-VALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLIF 82 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCCE-EECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHhcCCCeE-EeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHHH
Confidence 57899999999999999999999999 999999999999999999999999999999999999987 8999999999999
Q ss_pred HHhhhhhc
Q psy7554 104 HTGLKVDL 111 (115)
Q Consensus 104 ~I~~i~~~ 111 (115)
++ +++++
T Consensus 83 ~i-~~~~~ 89 (253)
T 2ze6_A 83 EV-DWRKS 89 (253)
T ss_dssp HH-HTTTT
T ss_pred HH-HHHhC
Confidence 99 77654
No 8
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=99.82 E-value=5.3e-22 Score=153.71 Aligned_cols=69 Identities=17% Similarity=0.114 Sum_probs=65.2
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCc---eecCCCCHHHhcCCCeee----ecccCCCCccCHHHH
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLD---VITNKVTPEEAEGIPHHL----LDFLDPNTRFTVVDY 97 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgld---IgTAKPs~eE~~~IpHHL----id~ldp~e~ySv~~F 97 (115)
++|+||||||||+||++||++.+ +| ||.||+|||++++ ||||||+ +|||| +|++++.+.|+++.|
T Consensus 37 ilI~GpsGsGKStLA~~La~~g~-~i-IsdDs~~v~~~~~~~liGtak~~------i~h~lEiRGigiid~~~~f~~~~f 108 (205)
T 2qmh_A 37 VLITGDSGVGKSETALELVQRGH-RL-IADDRVDVYQQDEQTIVGAAPPI------LSHLLEIRGLGIIDVMNLFGAGAV 108 (205)
T ss_dssp EEEECCCTTTTHHHHHHHHTTTC-EE-EESSEEEEEECSTTCEEEECCSS------STTEEEETTTEEEEHHHHHCTTSB
T ss_pred EEEECCCCCCHHHHHHHHHHhCC-eE-EecchhheeecCCceEEEECCcc------ccccccccceeEEcccccCCHHHH
Confidence 46899999999999999999988 99 9999999999999 9999997 99999 999999999999999
Q ss_pred HHHH
Q psy7554 98 RNRA 101 (115)
Q Consensus 98 ~~~A 101 (115)
++++
T Consensus 109 ~~~a 112 (205)
T 2qmh_A 109 REDT 112 (205)
T ss_dssp CSCC
T ss_pred HhcC
Confidence 8765
No 9
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.49 E-value=8.5e-08 Score=70.43 Aligned_cols=52 Identities=12% Similarity=0.066 Sum_probs=43.2
Q ss_pred eeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCceecCCCCHHHhcCCCeeeeccc
Q psy7554 26 LSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLLDFL 86 (115)
Q Consensus 26 li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLid~l 86 (115)
+|+||+|||||+|+..|++.+... ++...+..|.+|...|..++.||+++.-
T Consensus 12 ~l~GpsGsGKsTl~~~L~~~~~~~---------~~~~~~~~tr~~~~~e~~g~~y~~~~~~ 63 (208)
T 3tau_A 12 VLSGPSGVGKGTVREAVFKDPETS---------FDYSISMTTRLPREGEQDGVDYYFRSRE 63 (208)
T ss_dssp EEECCTTSCHHHHHHHHHHSTTCC---------CEECCCEESSCCCTTCCBTTTBEECCHH
T ss_pred EEECcCCCCHHHHHHHHHhhCCCc---------EEEEEecccccCcCcccCCceeEEecHH
Confidence 489999999999999999887642 3455567899999999999999987643
No 10
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.30 E-value=3.7e-07 Score=69.01 Aligned_cols=52 Identities=15% Similarity=0.055 Sum_probs=41.9
Q ss_pred eeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCceecCCCCHHHhcCCCeeeeccc
Q psy7554 26 LSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLLDFL 86 (115)
Q Consensus 26 li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLid~l 86 (115)
+|+||+|||||+|...|++.+...+ ..+. ...|.+|...|..+++||+++.-
T Consensus 23 vl~GPSGaGKsTL~~~L~~~~~~~~-~~~v--------s~TTR~p~~gE~~G~~y~fvs~~ 74 (197)
T 3ney_A 23 VLIGASGVGRSHIKNALLSQNPEKF-VYPV--------PYTTRPPRKSEEDGKEYHFISTE 74 (197)
T ss_dssp EEECCTTSSHHHHHHHHHHHCTTTE-ECCC--------CEECSCCCTTCCTTSSCEECCHH
T ss_pred EEECcCCCCHHHHHHHHHhhCCccE-Eeee--------cccccCCcCCeeccccceeccHH
Confidence 4799999999999999998876544 3333 35699999999999999998643
No 11
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.23 E-value=7.9e-07 Score=63.72 Aligned_cols=52 Identities=10% Similarity=-0.063 Sum_probs=37.0
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCceecCCCCHHHhcCCCeeeecc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLLDF 85 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLid~ 85 (115)
++|+||+|||||+|+..|++.+... ++..+...|.+|...|..++.||+++.
T Consensus 8 i~i~GpsGsGKSTL~~~L~~~~~~~---------~~~~i~~ttr~~~~ge~~g~~~~~~~~ 59 (180)
T 1kgd_A 8 LVLLGAHGVGRRHIKNTLITKHPDR---------FAYPIPHTTRPPKKDEENGKNYYFVSH 59 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTT---------EECCCCEECSCC---CCBTTTBEECCH
T ss_pred EEEECCCCCCHHHHHHHHHhhCCcc---------EEEeeeccCCCCCccccCCCeeEEeCH
Confidence 3489999999999999998865421 122345678888888889999998753
No 12
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.14 E-value=5.3e-07 Score=63.66 Aligned_cols=32 Identities=3% Similarity=-0.327 Sum_probs=29.8
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
++|+||+|||||++|..||++++... ++.|.+
T Consensus 8 i~l~G~~GsGKst~a~~La~~l~~~~-i~~d~~ 39 (185)
T 3trf_A 8 IYLIGLMGAGKTSVGSQLAKLTKRIL-YDSDKE 39 (185)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCE-EEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCE-EEChHH
Confidence 56799999999999999999999999 999986
No 13
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=98.03 E-value=1.5e-06 Score=65.13 Aligned_cols=25 Identities=12% Similarity=-0.092 Sum_probs=22.3
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
++|+|+++||||++|.+||++ +..+
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~ 26 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQV 26 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSE
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCe
Confidence 679999999999999999988 6555
No 14
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.96 E-value=4.1e-06 Score=58.02 Aligned_cols=32 Identities=6% Similarity=0.010 Sum_probs=28.1
Q ss_pred eeeeccCCCchhHHHHHHhc-CCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTD-GPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~-~~~~eI~IsaDSm 57 (115)
++|+||.|||||++|..|++ .++... |+.|..
T Consensus 5 I~i~G~~GsGKST~a~~L~~~~~~~~~-i~~d~~ 37 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFIAKNPGFYN-INRDDY 37 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSTTEEE-ECHHHH
T ss_pred EEEecCCCCCHHHHHHHHHhhcCCcEE-ecHHHH
Confidence 56899999999999999999 788888 888753
No 15
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.94 E-value=3.2e-06 Score=58.17 Aligned_cols=32 Identities=9% Similarity=-0.036 Sum_probs=28.7
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
++|+||.|||||+++..||++++..+ ++.|..
T Consensus 4 i~l~G~~GsGKsT~~~~L~~~l~~~~-i~~d~~ 35 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKLSKELKYPI-IKGSSF 35 (173)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHCCCE-EECCCH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCee-ecCccc
Confidence 57899999999999999999999888 888853
No 16
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.93 E-value=5.9e-06 Score=61.59 Aligned_cols=51 Identities=10% Similarity=-0.051 Sum_probs=40.9
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCceecCCCCHHHhcCCCeeeec
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLLD 84 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLid 84 (115)
++|+||+|||||+|.-+|.+++...+ ..-..-.|-+|-+.|..++.||+++
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~---------~~svs~TTR~pR~gE~~G~dY~Fvs 54 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSF---------GFSVSSTTRTPRAGEVNGKDYNFVS 54 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTE---------EECCCEECSCCCTTCCBTTTBEECC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCe---------EEEEEEeccCCCCCCcCCceeEeec
Confidence 57899999999999999987765433 1234566888888899999999986
No 17
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.91 E-value=3.7e-06 Score=60.51 Aligned_cols=32 Identities=3% Similarity=-0.209 Sum_probs=29.0
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
++|+||.|||||+++..|++.++..+ ++.|.+
T Consensus 21 I~l~G~~GsGKSTla~~L~~~lg~~~-i~~d~~ 52 (202)
T 3t61_A 21 IVVMGVSGSGKSSVGEAIAEACGYPF-IEGDAL 52 (202)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHTCCE-EEGGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCEE-EeCCcC
Confidence 45799999999999999999999888 888875
No 18
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.90 E-value=3.5e-06 Score=58.91 Aligned_cols=32 Identities=3% Similarity=-0.206 Sum_probs=28.9
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
++|+|+.|||||++|..||+.++... |+.|.+
T Consensus 6 I~l~G~~GsGKsT~a~~L~~~~~~~~-i~~d~~ 37 (196)
T 1tev_A 6 VFVLGGPGAGKGTQCARIVEKYGYTH-LSAGEL 37 (196)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCEE-EEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeE-EeHHHH
Confidence 56899999999999999999999888 888864
No 19
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.87 E-value=1.1e-05 Score=57.38 Aligned_cols=54 Identities=13% Similarity=0.233 Sum_probs=39.0
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCceecCCCCHHHhcCCCeeeec
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLLD 84 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLid 84 (115)
+.+++. |+||+|||||+|+..|+..+. +++-.....+.+|...++.++.+++.+
T Consensus 6 ~g~ii~---l~Gp~GsGKSTl~~~L~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (205)
T 3tr0_A 6 KANLFI---ISAPSGAGKTSLVRALVKALA----------EIKISISHTTRPKRPGDQEGVDYFFID 59 (205)
T ss_dssp CCCEEE---EECCTTSCHHHHHHHHHHHSS----------SEEECCCEECSCCCTTCCBTTTBEECC
T ss_pred CCcEEE---EECcCCCCHHHHHHHHHhhCC----------CeEEeceeccCCCchhHhcCceEEecc
Confidence 345544 899999999999999987653 234444566777777777778777654
No 20
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.85 E-value=3.8e-06 Score=58.30 Aligned_cols=32 Identities=3% Similarity=-0.174 Sum_probs=29.1
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
++|+|+.|||||++|..||+.++..+ ++.|.+
T Consensus 5 I~l~G~~GsGKsT~a~~La~~lg~~~-id~d~~ 36 (173)
T 1e6c_A 5 IFMVGARGCGMTTVGRELARALGYEF-VDTDIF 36 (173)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCEE-EEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcE-EcccHH
Confidence 56899999999999999999999988 888864
No 21
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.85 E-value=4.2e-06 Score=59.05 Aligned_cols=32 Identities=3% Similarity=-0.299 Sum_probs=29.2
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
++|+|+.|||||++|..||++++..+ ++.|.+
T Consensus 5 I~l~G~~GsGKsT~a~~La~~lg~~~-id~D~~ 36 (184)
T 2iyv_A 5 AVLVGLPGSGKSTIGRRLAKALGVGL-LDTDVA 36 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTCCE-EEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCE-EeCchH
Confidence 56899999999999999999999999 888864
No 22
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.85 E-value=5.8e-06 Score=59.89 Aligned_cols=31 Identities=0% Similarity=-0.244 Sum_probs=28.2
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
++|+||.|||||++|-.||++++..+ |++|.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~-i~~d~ 33 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPH-ISTGD 33 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCE-EEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcE-EeHHH
Confidence 67899999999999999999999888 88864
No 23
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.83 E-value=7.2e-06 Score=55.69 Aligned_cols=29 Identities=7% Similarity=-0.240 Sum_probs=25.9
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQV 55 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaD 55 (115)
++|+||.|||||++|..| ++++... ++.|
T Consensus 4 I~l~G~~GsGKsT~a~~L-~~~g~~~-i~~~ 32 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLL-KERGAKV-IVMS 32 (179)
T ss_dssp EEEECCTTSCHHHHHHHH-HHTTCEE-EEHH
T ss_pred EEEECCCCCCHHHHHHHH-HHCCCcE-EEHh
Confidence 568999999999999999 8899888 7765
No 24
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.83 E-value=4.2e-06 Score=59.13 Aligned_cols=32 Identities=6% Similarity=-0.195 Sum_probs=28.5
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
++|+||.|||||++|..||+.++... ++.|.+
T Consensus 15 I~l~G~~GsGKsT~a~~L~~~l~~~~-i~~d~~ 46 (199)
T 2bwj_A 15 IFIIGGPGSGKGTQCEKLVEKYGFTH-LSTGEL 46 (199)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHTCEE-EEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeE-EcHHHH
Confidence 56899999999999999999999888 888754
No 25
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.81 E-value=1.2e-05 Score=58.23 Aligned_cols=50 Identities=12% Similarity=0.101 Sum_probs=35.8
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCceecCCCCHHHhcCCCeeee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLL 83 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLi 83 (115)
++|+||+|||||+|+..|++.+++.+ +....-.|-+|...|..+..++++
T Consensus 15 i~l~G~sGsGKsTl~~~L~~~~~~~~---------~~~~~~ttR~~~~~e~~g~~~~~~ 64 (204)
T 2qor_A 15 LVVCGPSGVGKGTLIKKVLSEFPSRF---------RFSISCTTRNKREKETNGVDYYFV 64 (204)
T ss_dssp EEEECCTTSCHHHHHHHHHHHCTTTE---------EECCEEECSCCCTTCCBTTTEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHhCccce---------eeeeeecCCCCCCCCCCCcceeeC
Confidence 45799999999999999999886422 112345677776666666666665
No 26
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.81 E-value=5.6e-06 Score=59.80 Aligned_cols=31 Identities=0% Similarity=-0.209 Sum_probs=27.9
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
|+|+||.|||||++|-.||++++... +++|.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~-i~~d~ 33 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPH-ISTGD 33 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCE-EEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcE-eeHHH
Confidence 67899999999999999999999888 87764
No 27
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.81 E-value=6.1e-06 Score=59.64 Aligned_cols=32 Identities=0% Similarity=-0.247 Sum_probs=28.9
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
++|+||+|||||+++..||+.++... ++.|..
T Consensus 28 i~l~G~~GsGKsTl~~~La~~l~~~~-i~~d~~ 59 (199)
T 3vaa_A 28 IFLTGYMGAGKTTLGKAFARKLNVPF-IDLDWY 59 (199)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCE-EEHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCE-EcchHH
Confidence 45799999999999999999999988 888874
No 28
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.80 E-value=8.5e-06 Score=58.31 Aligned_cols=31 Identities=3% Similarity=-0.213 Sum_probs=28.5
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
|+|+|+.|||||+++..||+.++... |++|.
T Consensus 18 I~l~G~~GsGKsT~~~~L~~~~g~~~-i~~d~ 48 (203)
T 1ukz_A 18 IFVLGGPGAGKGTQCEKLVKDYSFVH-LSAGD 48 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCEE-EEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHcCceE-EeHHH
Confidence 66899999999999999999999888 99885
No 29
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.79 E-value=6.9e-06 Score=60.35 Aligned_cols=32 Identities=9% Similarity=-0.183 Sum_probs=28.5
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
|+|+||.|||||+++..||+.++... |+.|.+
T Consensus 10 I~l~G~~GsGKsT~a~~La~~l~~~~-i~~d~~ 41 (227)
T 1zd8_A 10 AVIMGAPGSGKGTVSSRITTHFELKH-LSSGDL 41 (227)
T ss_dssp EEEEECTTSSHHHHHHHHHHHSSSEE-EEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE-EechHH
Confidence 56899999999999999999999888 888753
No 30
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.79 E-value=5.7e-06 Score=58.25 Aligned_cols=32 Identities=13% Similarity=-0.081 Sum_probs=28.9
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
++|+||.|||||++|..||++++... ++.|.+
T Consensus 7 i~i~G~~GsGKsTla~~La~~l~~~~-~d~d~~ 38 (175)
T 1via_A 7 IVFIGFMGSGKSTLARALAKDLDLVF-LDSDFL 38 (175)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEE-EEHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCE-EcccHH
Confidence 66899999999999999999999888 888764
No 31
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.78 E-value=6.8e-06 Score=57.35 Aligned_cols=31 Identities=0% Similarity=-0.251 Sum_probs=28.2
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
++|+|+.|||||+++..||+.++... +++|.
T Consensus 9 I~l~G~~GsGKsT~~~~L~~~l~~~~-i~~d~ 39 (194)
T 1qf9_A 9 VFVLGGPGSGKGTQCANIVRDFGWVH-LSAGD 39 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCEE-EEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeE-eeHHH
Confidence 56899999999999999999999888 88875
No 32
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.78 E-value=7.3e-06 Score=57.62 Aligned_cols=31 Identities=6% Similarity=-0.150 Sum_probs=27.9
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
++++||.|||||+++..||+.++... +++|.
T Consensus 7 I~l~G~~GsGKST~~~~La~~l~~~~-i~~d~ 37 (186)
T 3cm0_A 7 VIFLGPPGAGKGTQASRLAQELGFKK-LSTGD 37 (186)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEE-ECHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeE-ecHHH
Confidence 66899999999999999999998888 88874
No 33
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.77 E-value=1.3e-05 Score=58.94 Aligned_cols=54 Identities=17% Similarity=0.169 Sum_probs=35.4
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHh-cCCCceEeeccceeeeccCCceecCCCCHHHhcCCCeeeec
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLT-DGPDLFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLLD 84 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA-~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLid 84 (115)
+.+++. |+||+|||||+|+..|+ ..+.. ++.+.++.|.+|...+..++.++..+
T Consensus 26 ~G~ii~---l~Gp~GsGKSTl~~~L~~~~~~~----------~~~~~~~~~~~~~~g~~~g~~~~~~~ 80 (231)
T 3lnc_A 26 VGVILV---LSSPSGCGKTTVANKLLEKQKNN----------IVKSVSVTTRAARKGEKEGKDYYFVD 80 (231)
T ss_dssp CCCEEE---EECSCC----CHHHHHHC----C----------EEECCCEESSCCCTTCCBTTTBEECC
T ss_pred CCCEEE---EECCCCCCHHHHHHHHHhcCCCC----------cccccccCCCCCCccccCCCeEEEec
Confidence 445554 89999999999999999 54432 45677888999988877777777653
No 34
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.76 E-value=7.5e-06 Score=57.68 Aligned_cols=31 Identities=0% Similarity=-0.278 Sum_probs=28.0
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
|+|+||.|||||+++..||+.++... ++.|.
T Consensus 12 I~l~G~~GsGKsT~~~~La~~l~~~~-i~~d~ 42 (196)
T 2c95_A 12 IFVVGGPGSGKGTQCEKIVQKYGYTH-LSTGD 42 (196)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHCCEE-EEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeE-EcHHH
Confidence 56799999999999999999999888 88875
No 35
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.76 E-value=1.1e-05 Score=56.07 Aligned_cols=32 Identities=6% Similarity=-0.164 Sum_probs=27.8
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
++|+||.|||||+|+..||+.++... +..|..
T Consensus 7 i~l~G~~GsGKSTl~~~La~~l~~~~-id~d~~ 38 (173)
T 1kag_A 7 IFLVGPMGAGKSTIGRQLAQQLNMEF-YDSDQE 38 (173)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTTCEE-EEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCE-EeccHH
Confidence 45799999999999999999998877 877753
No 36
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.76 E-value=7.2e-06 Score=57.64 Aligned_cols=32 Identities=9% Similarity=-0.078 Sum_probs=28.7
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
++|+|+.|||||+++..||+.++... ++.|.+
T Consensus 8 I~l~G~~GsGKST~~~~L~~~l~~~~-i~~D~~ 39 (193)
T 2rhm_A 8 IIVTGHPATGKTTLSQALATGLRLPL-LSKDAF 39 (193)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCCE-EEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE-ecHHHH
Confidence 56899999999999999999998888 888865
No 37
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.75 E-value=8.7e-06 Score=57.39 Aligned_cols=32 Identities=16% Similarity=-0.056 Sum_probs=28.6
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
++|+|+.|||||.++..||+.++... ++.|.+
T Consensus 14 i~i~G~~GsGKst~~~~l~~~~~~~~-~~~d~~ 45 (180)
T 3iij_A 14 ILLTGTPGVGKTTLGKELASKSGLKY-INVGDL 45 (180)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEE-EEHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHhCCeE-EEHHHH
Confidence 45799999999999999999999988 888753
No 38
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.71 E-value=1e-05 Score=56.02 Aligned_cols=32 Identities=3% Similarity=-0.383 Sum_probs=28.9
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
|+|+|+.|||||++|..||+.++..+ ++.|.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~~~~-i~~d~~ 34 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLNIPF-YDVDEE 34 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHTCCE-EEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCE-EECcHH
Confidence 67899999999999999999999888 888764
No 39
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.70 E-value=1.5e-05 Score=56.98 Aligned_cols=31 Identities=3% Similarity=-0.259 Sum_probs=27.9
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
+.|+||.|||||+++..||+ ++..+ +++|.+
T Consensus 4 i~i~G~~GsGKSTl~~~L~~-~g~~~-i~~d~~ 34 (204)
T 2if2_A 4 IGLTGNIGCGKSTVAQMFRE-LGAYV-LDADKL 34 (204)
T ss_dssp EEEEECTTSSHHHHHHHHHH-TTCEE-EEHHHH
T ss_pred EEEECCCCcCHHHHHHHHHH-CCCEE-EEccHH
Confidence 67899999999999999999 88888 888864
No 40
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.68 E-value=1.6e-05 Score=56.20 Aligned_cols=31 Identities=6% Similarity=-0.379 Sum_probs=27.2
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
+.|+|+.|||||+++..||+. +..+ +++|.+
T Consensus 11 I~i~G~~GsGKST~~~~La~~-g~~~-id~d~~ 41 (203)
T 1uf9_A 11 IGITGNIGSGKSTVAALLRSW-GYPV-LDLDAL 41 (203)
T ss_dssp EEEEECTTSCHHHHHHHHHHT-TCCE-EEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHC-CCEE-EcccHH
Confidence 668999999999999999998 7777 888853
No 41
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.68 E-value=2.9e-05 Score=55.93 Aligned_cols=32 Identities=6% Similarity=-0.224 Sum_probs=28.3
Q ss_pred eeeeccCCCchhHHHHHHhcCC-CceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP-DLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~-~~eI~IsaDSm 57 (115)
+.|+||+|||||+++..|++.+ +..+ +++|..
T Consensus 24 i~i~G~~GsGKSTl~~~L~~~~~~~~~-i~~D~~ 56 (207)
T 2qt1_A 24 IGISGVTNSGKTTLAKNLQKHLPNCSV-ISQDDF 56 (207)
T ss_dssp EEEEESTTSSHHHHHHHHHTTSTTEEE-EEGGGG
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCcEE-EeCCcc
Confidence 4589999999999999999998 6777 999964
No 42
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.67 E-value=2e-05 Score=56.94 Aligned_cols=43 Identities=12% Similarity=0.060 Sum_probs=29.7
Q ss_pred eeeccCCCceeEeeeeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 11 VNLLTGTPDQVYLSYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 11 ~~~~~~~~~~~~~~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
-+.+++.+.+++. |+||.|||||+|+..||+.++... ++.|.+
T Consensus 21 ~~~m~~~~g~~i~---l~G~~GsGKSTl~~~L~~~~g~~~-i~~d~~ 63 (200)
T 4eun_A 21 QSMMTGEPTRHVV---VMGVSGSGKTTIAHGVADETGLEF-AEADAF 63 (200)
T ss_dssp -------CCCEEE---EECCTTSCHHHHHHHHHHHHCCEE-EEGGGG
T ss_pred HhhhcCCCCcEEE---EECCCCCCHHHHHHHHHHhhCCeE-Eccccc
Confidence 3445555666655 899999999999999999886666 777764
No 43
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.67 E-value=1.7e-05 Score=56.73 Aligned_cols=32 Identities=6% Similarity=-0.194 Sum_probs=28.1
Q ss_pred eeeeccCCCchhHHHHHHhcC-CCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDG-PDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~-~~~eI~IsaDSm 57 (115)
++|+|+.|||||+++..||+. ++... |++|.+
T Consensus 13 I~l~G~~GsGKSTv~~~La~~l~g~~~-id~d~~ 45 (184)
T 1y63_A 13 ILITGTPGTGKTSMAEMIAAELDGFQH-LEVGKL 45 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSTTEEE-EEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCEE-eeHHHH
Confidence 567999999999999999999 68888 888853
No 44
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.67 E-value=1.9e-05 Score=61.43 Aligned_cols=32 Identities=3% Similarity=-0.021 Sum_probs=27.2
Q ss_pred eeeeccCCCchhHHHHHHhcCC--CceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP--DLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~--~~eI~IsaDSm 57 (115)
++|+||.|||||+++..|++++ +... ||+|..
T Consensus 36 ivl~G~sGsGKSTla~~L~~~~~~~~~~-Is~D~~ 69 (287)
T 1gvn_B 36 FLLGGQPGSGKTSLRSAIFEETQGNVIV-IDNDTF 69 (287)
T ss_dssp EEEECCTTSCTHHHHHHHHHHTTTCCEE-ECTHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeEE-EechHh
Confidence 5689999999999999999988 4556 888754
No 45
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.67 E-value=1.9e-05 Score=55.09 Aligned_cols=32 Identities=6% Similarity=-0.399 Sum_probs=25.9
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceE-eeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFC-RTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI-~IsaDS 56 (115)
++|+||.|||||+++..||++++... .++.|.
T Consensus 6 i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~ 38 (178)
T 1qhx_A 6 IILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDS 38 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEeccch
Confidence 56899999999999999999987543 256664
No 46
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.67 E-value=1.3e-05 Score=55.95 Aligned_cols=32 Identities=6% Similarity=-0.231 Sum_probs=28.5
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
++|+|+.|||||++|..||++++..+ +.+|.+
T Consensus 10 i~l~G~~GsGKSTva~~La~~lg~~~-id~D~~ 41 (168)
T 1zuh_A 10 LVLIGFMGSGKSSLAQELGLALKLEV-LDTDMI 41 (168)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCCE-EEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCE-EEChHH
Confidence 45899999999999999999999998 888764
No 47
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.66 E-value=2e-05 Score=59.12 Aligned_cols=37 Identities=8% Similarity=-0.197 Sum_probs=31.2
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCce----------EeeccceeeeccCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLF----------CRTYQVYLMVYKGL 63 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~e----------I~IsaDSmQVYkgl 63 (115)
-+.|+|+.|||||++|..||+.++.. + |+.|. +|+.+
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~-i~~D~--~~~~~ 70 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVI-LSQDS--FYRVL 70 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEE-EEGGG--GBCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEE-EecCc--ccccc
Confidence 36789999999999999999998865 6 88886 47654
No 48
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.64 E-value=1.2e-05 Score=56.20 Aligned_cols=31 Identities=6% Similarity=-0.254 Sum_probs=26.4
Q ss_pred eeeeccCCCchhHHHHHHhcCCC-----ceEeeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD-----LFCRTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~-----~eI~IsaDS 56 (115)
|+|+||.|||||+++..||+.++ ... ++.|.
T Consensus 6 I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~-i~~~~ 41 (192)
T 1kht_A 6 VVVTGVPGVGSTTSSQLAMDNLRKEGVNYKM-VSFGS 41 (192)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTTCCCEE-EEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCcceEE-EehHH
Confidence 56899999999999999999887 667 76653
No 49
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.63 E-value=1.7e-05 Score=57.87 Aligned_cols=31 Identities=6% Similarity=-0.134 Sum_probs=28.0
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
|+++||.|||||++|..||+.++... |+.|.
T Consensus 7 I~l~G~~GsGKsT~a~~La~~l~~~~-i~~d~ 37 (220)
T 1aky_A 7 MVLIGPPGAGKGTQAPNLQERFHAAH-LATGD 37 (220)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCEE-EEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHcCceE-EehhH
Confidence 56799999999999999999999888 88765
No 50
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.63 E-value=2.1e-05 Score=55.00 Aligned_cols=32 Identities=9% Similarity=-0.038 Sum_probs=27.8
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
++|+||.|||||+++..|++.++... ++.|.+
T Consensus 11 i~l~G~~GsGKSTl~~~l~~~~g~~~-i~~d~~ 42 (175)
T 1knq_A 11 YVLMGVSGSGKSAVASEVAHQLHAAF-LDGDFL 42 (175)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHTCEE-EEGGGG
T ss_pred EEEEcCCCCCHHHHHHHHHHhhCcEE-EeCccc
Confidence 45899999999999999999887777 888875
No 51
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.62 E-value=1.5e-05 Score=59.14 Aligned_cols=32 Identities=3% Similarity=-0.321 Sum_probs=29.5
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
+.|+|+.|||||++|..||+.++..+ |++|.+
T Consensus 15 IgltG~~GSGKSTva~~L~~~lg~~v-id~D~~ 46 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKYGAHV-VNVDRI 46 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEE-EEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCEE-EECcHH
Confidence 56799999999999999999889999 999976
No 52
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.61 E-value=1.3e-05 Score=58.36 Aligned_cols=31 Identities=0% Similarity=-0.285 Sum_probs=28.1
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
|+|+||.|||||++|..||+.++... |++|.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~-i~~d~ 33 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQ-ISTGD 33 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCE-EEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeE-EeHHH
Confidence 67899999999999999999998888 88864
No 53
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.61 E-value=1.5e-05 Score=57.65 Aligned_cols=32 Identities=3% Similarity=-0.166 Sum_probs=27.8
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
+.|+||+|||||+++..||+.++... +.+|.+
T Consensus 8 i~i~G~~GsGKSTl~~~L~~~~g~~~-~d~g~i 39 (227)
T 1cke_A 8 ITIDGPSGAGKGTLCKAMAEALQWHL-LDSGAI 39 (227)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCEE-EEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCc-ccCcce
Confidence 55899999999999999999998888 777654
No 54
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.61 E-value=1.3e-05 Score=58.52 Aligned_cols=31 Identities=3% Similarity=-0.255 Sum_probs=27.6
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
|+|+||.|||||+++..||+.++... ++.|.
T Consensus 8 I~l~G~~GsGKsT~~~~La~~l~~~~-i~~d~ 38 (222)
T 1zak_A 8 VMISGAPASGKGTQCELIKTKYQLAH-ISAGD 38 (222)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCEE-CCHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCce-ecHHH
Confidence 56799999999999999999999877 77765
No 55
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.59 E-value=2.7e-05 Score=55.86 Aligned_cols=43 Identities=12% Similarity=-0.020 Sum_probs=30.8
Q ss_pred eeeeccCCCceeEeeeeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 10 QVNLLTGTPDQVYLSYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 10 ~~~~~~~~~~~~~~~~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
.-|+..+...-+ |+|+||.|||||++|..||+.++... |+.|.
T Consensus 11 ~~~~~~~~~~~~---I~l~G~~GsGKST~a~~La~~l~~~~-i~~d~ 53 (201)
T 2cdn_A 11 SSGLVPRGSHMR---VLLLGPPGAGKGTQAVKLAEKLGIPQ-ISTGE 53 (201)
T ss_dssp -----CCCSCCE---EEEECCTTSSHHHHHHHHHHHHTCCE-EEHHH
T ss_pred cccccCCCCCeE---EEEECCCCCCHHHHHHHHHHHhCCcE-EehhH
Confidence 345555444432 55899999999999999999998888 88765
No 56
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.58 E-value=1.6e-05 Score=56.43 Aligned_cols=32 Identities=6% Similarity=-0.145 Sum_probs=28.6
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
+.|+|+.|||||+++..||+.++..+ +..|.+
T Consensus 5 i~i~G~~GsGKst~~~~la~~lg~~~-~d~d~~ 36 (208)
T 3ake_A 5 VTIDGPSASGKSSVARRVAAALGVPY-LSSGLL 36 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTCCE-EEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCce-eccchH
Confidence 56899999999999999999999888 888854
No 57
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.57 E-value=2.8e-05 Score=55.17 Aligned_cols=33 Identities=15% Similarity=0.019 Sum_probs=27.5
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
++|+||.|||||+|+..|++..++.+.++.|.+
T Consensus 5 i~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~ 37 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAAQLDNSAYIEGDII 37 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHH
T ss_pred EEEECCCCCcHHHHHHHHhcccCCeEEEcccch
Confidence 458999999999999999998888654777754
No 58
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.56 E-value=9.6e-05 Score=51.99 Aligned_cols=38 Identities=11% Similarity=-0.097 Sum_probs=28.4
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCCC-ceEeecccee
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGPD-LFCRTYQVYL 57 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~~-~eI~IsaDSm 57 (115)
.+.+++. |+||.|||||+|+..||..++ +.|.++.|.+
T Consensus 7 ~~g~~i~---l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 7 LGGNILL---LSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CTTEEEE---EEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCeEEE---EECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 3455554 899999999999999999875 4443666653
No 59
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.55 E-value=1.9e-05 Score=57.89 Aligned_cols=31 Identities=3% Similarity=-0.277 Sum_probs=28.3
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
|+|+|+.|||||++|..||+.++... |+.|.
T Consensus 8 I~l~G~~GsGKsT~a~~La~~l~~~~-i~~d~ 38 (217)
T 3be4_A 8 LILIGAPGSGKGTQCEFIKKEYGLAH-LSTGD 38 (217)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHCCEE-EEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCceE-EehhH
Confidence 67899999999999999999999888 88875
No 60
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.55 E-value=2.6e-05 Score=54.52 Aligned_cols=30 Identities=10% Similarity=-0.105 Sum_probs=26.2
Q ss_pred eeeeccCCCchhHHHHHHhcCC---CceEeeccc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP---DLFCRTYQV 55 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~---~~eI~IsaD 55 (115)
++|+|+.|||||+++..|++.+ +..+ +++|
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~-i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFV-SLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCE-EEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeE-EEEe
Confidence 5789999999999999999987 6677 7776
No 61
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.54 E-value=3.4e-05 Score=62.83 Aligned_cols=37 Identities=3% Similarity=-0.147 Sum_probs=32.9
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKG 62 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkg 62 (115)
++|+|+.|||||++|..|++.++... |+.|.+..|+.
T Consensus 261 Iil~G~pGSGKSTla~~L~~~~~~~~-i~~D~~~~~~~ 297 (416)
T 3zvl_A 261 VVAVGFPGAGKSTFIQEHLVSAGYVH-VNRDTLGSWQR 297 (416)
T ss_dssp EEEESCTTSSHHHHHHHHTGGGTCEE-CCGGGSCSHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhcCcEE-EccchHHHHHH
Confidence 45899999999999999999999999 99999876653
No 62
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.53 E-value=4.1e-05 Score=54.99 Aligned_cols=31 Identities=6% Similarity=-0.331 Sum_probs=27.3
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
+.|+||.|||||+++..||+ ++..+ +++|.+
T Consensus 5 i~l~G~~GsGKST~~~~La~-lg~~~-id~d~~ 35 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLFTD-LGVPL-VDADVV 35 (206)
T ss_dssp EEEECSTTSCHHHHHHHHHT-TTCCE-EEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCcc-cchHHH
Confidence 56899999999999999998 88778 888865
No 63
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.53 E-value=2.7e-05 Score=58.58 Aligned_cols=31 Identities=6% Similarity=-0.081 Sum_probs=28.1
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
++|+||.|||||++|..|+++++... |++|.
T Consensus 32 I~l~G~~GsGKsT~a~~L~~~~g~~~-is~~~ 62 (243)
T 3tlx_A 32 YIFLGAPGSGKGTQSLNLKKSHCYCH-LSTGD 62 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCEE-EEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeE-EecHH
Confidence 56799999999999999999999888 88865
No 64
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.52 E-value=2.3e-05 Score=57.89 Aligned_cols=31 Identities=13% Similarity=-0.115 Sum_probs=27.9
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
|+|+||.|||||+++..||+.++... |+.|.
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~-i~~dd 33 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAH-IESGG 33 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEE-EEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeE-EchHH
Confidence 67899999999999999999998888 88865
No 65
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.49 E-value=3.2e-05 Score=57.20 Aligned_cols=31 Identities=6% Similarity=-0.170 Sum_probs=28.1
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
|+++|+.|||||++|..||++++... |+.|.
T Consensus 19 I~l~G~~GsGKsT~a~~La~~l~~~~-i~~d~ 49 (233)
T 1ak2_A 19 AVLLGPPGAGKGTQAPKLAKNFCVCH-LATGD 49 (233)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCEE-EEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCce-ecHHH
Confidence 66799999999999999999999888 88874
No 66
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.47 E-value=2.5e-05 Score=54.46 Aligned_cols=23 Identities=9% Similarity=-0.132 Sum_probs=21.4
Q ss_pred eeeeccCCCchhHHHHHHhcCCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD 47 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~ 47 (115)
|+|+||.|||||+++-.||++++
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999886
No 67
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.45 E-value=7e-05 Score=54.33 Aligned_cols=31 Identities=3% Similarity=-0.231 Sum_probs=27.4
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
+.|+|+.|||||+++..||+ ++..+ |++|.+
T Consensus 7 I~i~G~~GSGKST~~~~L~~-lg~~~-id~D~~ 37 (218)
T 1vht_A 7 VALTGGIGSGKSTVANAFAD-LGINV-IDADII 37 (218)
T ss_dssp EEEECCTTSCHHHHHHHHHH-TTCEE-EEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH-cCCEE-EEccHH
Confidence 56899999999999999999 88888 888853
No 68
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.45 E-value=8.6e-05 Score=53.10 Aligned_cols=50 Identities=10% Similarity=-0.055 Sum_probs=33.8
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCceecCCCCHHHhcCCCeeee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLL 83 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLi 83 (115)
+.|+||+|||||+|...|+..+.... +......|-+|..-|..++.+|..
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~~~~~---------~~~~~~~tr~~~~ge~~g~~~~~~ 53 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEYPDSF---------GFSVSSTTRTPRAGEVNGKDYNFV 53 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHCGGGE---------ECCCEEECSCCCTTCCBTTTBEEC
T ss_pred EEEECCCCCCHHHHHHHHHhhCCccc---------eEEeeccccCCCCCccCCeeeeec
Confidence 34899999999999999987654211 112345666676666666666654
No 69
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.44 E-value=7.7e-05 Score=55.77 Aligned_cols=35 Identities=9% Similarity=-0.105 Sum_probs=27.7
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeeccceeee
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMV 59 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQV 59 (115)
+++|.||+|+|||.||..+|+.++..+ +..+..++
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~~~~~~-~~v~~~~~ 87 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATETNATF-IRVVGSEL 87 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHTTCEE-EEEEGGGG
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCE-EEEehHHH
Confidence 456799999999999999999998876 54444333
No 70
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.42 E-value=5.5e-05 Score=57.27 Aligned_cols=30 Identities=3% Similarity=-0.069 Sum_probs=26.6
Q ss_pred eeeeccCCCchhHHHHHHhcCC-CceEeeccc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP-DLFCRTYQV 55 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~-~~eI~IsaD 55 (115)
++|+||.|||||++|..|++++ +... |+.|
T Consensus 5 I~l~G~~GsGKST~a~~L~~~~~~~~~-i~~D 35 (301)
T 1ltq_A 5 ILTIGCPGSGKSTWAREFIAKNPGFYN-INRD 35 (301)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSTTEEE-ECHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEE-eccc
Confidence 5689999999999999999975 6667 9998
No 71
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.41 E-value=5e-05 Score=51.96 Aligned_cols=23 Identities=13% Similarity=-0.198 Sum_probs=20.1
Q ss_pred eeeeeccCCCchhHHHHHHhcCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~ 46 (115)
.++|.||+|+|||.|+..+|+.+
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHH
Confidence 34679999999999999999875
No 72
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.40 E-value=2.5e-05 Score=61.00 Aligned_cols=32 Identities=0% Similarity=-0.261 Sum_probs=25.2
Q ss_pred eeeeccCCCchhHHHHHHhcCCC-----ceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD-----LFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~-----~eI~IsaDSm 57 (115)
+.|+||.|||||++|..|++.++ ..+ |++|++
T Consensus 8 IgItG~sGSGKSTva~~L~~~lg~~~~~~~v-I~~D~~ 44 (290)
T 1a7j_A 8 ISVTGSSGAGTSTVKHTFDQIFRREGVKAVS-IEGDAF 44 (290)
T ss_dssp EEEESCC---CCTHHHHHHHHHHHHTCCEEE-EEGGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCCeeE-eecchh
Confidence 66899999999999999999876 577 999975
No 73
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.37 E-value=0.00012 Score=54.15 Aligned_cols=54 Identities=17% Similarity=0.126 Sum_probs=34.9
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCceecCCCCHHHhcCCCeee
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHL 82 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHL 82 (115)
.+.+++. |+||+|||||+|...|+..+.|.|.+ +.++.|..|...++.++.+.+
T Consensus 21 ~~G~~~~---lvGpsGsGKSTLl~~L~g~~pG~i~~---------g~~~~~~~~~~~~~~~i~~~~ 74 (218)
T 1z6g_A 21 NNIYPLV---ICGPSGVGKGTLIKKLLNEFPNYFYF---------SVSCTTRKKREKEKEGVDYYF 74 (218)
T ss_dssp -CCCCEE---EECSTTSSHHHHHHHHHHHSTTTEEE---------CCCEECSCCCSSCCBTTTBEE
T ss_pred CCCCEEE---EECCCCCCHHHHHHHHHhhCCCcEEE---------eecccCCCCCcccccCCeEEE
Confidence 4556665 89999999999999998755455522 445555555444555555444
No 74
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.36 E-value=6.7e-05 Score=54.17 Aligned_cols=32 Identities=3% Similarity=-0.118 Sum_probs=28.5
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
+.|+|+.|||||+++..||+.++... ++.|.+
T Consensus 6 i~i~G~~gsGkst~~~~l~~~~g~~~-~~~d~~ 37 (219)
T 2h92_A 6 IALDGPAAAGKSTIAKRVASELSMIY-VDTGAM 37 (219)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCEE-EEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCce-ecCChH
Confidence 56899999999999999999999888 777754
No 75
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.36 E-value=7.3e-05 Score=52.59 Aligned_cols=26 Identities=0% Similarity=-0.203 Sum_probs=23.7
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
|+|.|+.|||||+++..||+.++...
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~~~ 28 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGYEI 28 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCEE
T ss_pred EEEECCCccCHHHHHHHHHHhcCCcE
Confidence 67899999999999999999988765
No 76
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.35 E-value=6.9e-05 Score=52.26 Aligned_cols=27 Identities=11% Similarity=-0.173 Sum_probs=20.7
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRT 52 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~I 52 (115)
|+|+|+.|||||++|..||+.++..+ +
T Consensus 8 I~l~G~~GsGKST~a~~La~~l~~~~-i 34 (183)
T 2vli_A 8 IWINGPFGVGKTHTAHTLHERLPGSF-V 34 (183)
T ss_dssp EEEECCC----CHHHHHHHHHSTTCE-E
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCE-E
Confidence 56799999999999999999999887 5
No 77
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.35 E-value=0.00011 Score=54.76 Aligned_cols=44 Identities=9% Similarity=-0.173 Sum_probs=31.7
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhcCCCce----------EeeccceeeeccCCce
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTDGPDLF----------CRTYQVYLMVYKGLDV 65 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~~~~~e----------I~IsaDSmQVYkgldI 65 (115)
-.+.+++- |+||.|||||+|+..|+..++.. + +..|. +|+.+..
T Consensus 22 i~~g~iig---I~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~-v~~d~--~~~~l~~ 75 (245)
T 2jeo_A 22 SMRPFLIG---VSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVI-LSQDR--FYKVLTA 75 (245)
T ss_dssp -CCSEEEE---EECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEE-EEGGG--GBCCCCH
T ss_pred CCCCEEEE---EECCCCCCHHHHHHHHHHHhchhcccccCCceEE-EeCCc--CccccCH
Confidence 34455544 89999999999999999866532 4 67774 7876643
No 78
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.34 E-value=8.9e-05 Score=50.37 Aligned_cols=22 Identities=14% Similarity=-0.154 Sum_probs=19.7
Q ss_pred eeeeccCCCchhHHHHHHhcCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~ 46 (115)
++|.||+|+|||.|+..+|+.+
T Consensus 46 ~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 46 PVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999875
No 79
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.34 E-value=7.1e-05 Score=56.14 Aligned_cols=31 Identities=13% Similarity=0.052 Sum_probs=26.0
Q ss_pred eeEeeeeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 20 QVYLSYLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 20 ~~~~~~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
....+++|.||+|+|||.||..+|+..+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~ 92 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPF 92 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTCSE
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 3445677899999999999999999887654
No 80
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=97.32 E-value=8.9e-05 Score=56.36 Aligned_cols=45 Identities=7% Similarity=-0.068 Sum_probs=37.6
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCc--eecCCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLD--VITNKV 70 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgld--IgTAKP 70 (115)
.++|+|+.|+|||+||.+|.++ +..+ |+-|...|++.-+ +|++.+
T Consensus 18 gvli~G~SGaGKStlal~L~~r-G~~l-vaDD~v~i~~~~~~l~g~~p~ 64 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDR-GHQL-VCDDVIDLKQENNQLIGSCPS 64 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHT-TCEE-EESSEEEEEESSSCEEEECCT
T ss_pred EEEEEcCCCCCHHHHHHHHHHc-CCeE-ecCCEEEEEEeCCEEEEeCch
Confidence 4679999999999999999985 6778 9999999998866 566544
No 81
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.31 E-value=8.9e-05 Score=58.32 Aligned_cols=33 Identities=12% Similarity=-0.056 Sum_probs=26.8
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
++++.||+|+|||.+|..+|+.++..+ +..|..
T Consensus 74 ~ill~Gp~GtGKT~la~~la~~l~~~~-~~~~~~ 106 (376)
T 1um8_A 74 NILLIGPTGSGKTLMAQTLAKHLDIPI-AISDAT 106 (376)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCCE-EEEEGG
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCE-EEecch
Confidence 456899999999999999999998766 544443
No 82
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.31 E-value=8.2e-05 Score=57.38 Aligned_cols=31 Identities=6% Similarity=-0.201 Sum_probs=28.0
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
|.|+|+.|||||++|-.|+ +++..+ |++|.+
T Consensus 78 I~I~G~~GSGKSTva~~La-~lg~~~-id~D~~ 108 (281)
T 2f6r_A 78 LGLTGISGSGKSSVAQRLK-NLGAYI-IDSDHL 108 (281)
T ss_dssp EEEEECTTSCHHHHHHHHH-HHTCEE-EEHHHH
T ss_pred EEEECCCCCCHHHHHHHHH-HCCCcE-EehhHH
Confidence 6789999999999999999 578888 999876
No 83
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.30 E-value=9.8e-05 Score=55.58 Aligned_cols=32 Identities=3% Similarity=-0.323 Sum_probs=26.5
Q ss_pred eeeeccCCCchhHHHHHHhcCCCc--eEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDL--FCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~--eI~IsaDSm 57 (115)
++++||.|||||++|..|++.++. .+ ++.|.+
T Consensus 35 i~l~G~~GsGKSTla~~L~~~l~~~~~~-~~~D~~ 68 (253)
T 2p5t_B 35 ILLGGQSGAGKTTIHRIKQKEFQGNIVI-IDGDSF 68 (253)
T ss_dssp EEEESCGGGTTHHHHHHHHHHTTTCCEE-ECGGGG
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCcEE-EecHHH
Confidence 568999999999999999999873 34 677754
No 84
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.28 E-value=7.8e-05 Score=55.65 Aligned_cols=27 Identities=15% Similarity=-0.016 Sum_probs=23.8
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
++++.||+|+|||.+|..+|+.++..+
T Consensus 52 ~vll~G~~GtGKT~la~~la~~l~~~~ 78 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLAKLANAPF 78 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHTCCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 566799999999999999999887655
No 85
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.28 E-value=9.7e-05 Score=55.70 Aligned_cols=24 Identities=4% Similarity=-0.175 Sum_probs=20.8
Q ss_pred eeeeeeccCCCchhHHHHHHhcCC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~ 46 (115)
.+++|.||+|+|||.+|..+|+.+
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 356689999999999999998776
No 86
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.27 E-value=0.00014 Score=54.78 Aligned_cols=27 Identities=7% Similarity=-0.139 Sum_probs=24.1
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
+++|.||+|+|||.+|..+|+..+...
T Consensus 56 ~vll~Gp~GtGKT~la~~la~~~~~~~ 82 (297)
T 3b9p_A 56 GLLLFGPPGNGKTLLARAVATECSATF 82 (297)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHTTCEE
T ss_pred eEEEECcCCCCHHHHHHHHHHHhCCCe
Confidence 456899999999999999999998766
No 87
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.27 E-value=0.00012 Score=54.41 Aligned_cols=32 Identities=6% Similarity=-0.140 Sum_probs=25.6
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
.++|.||+|+|||.|+..+|..++... +..|.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~~~~-~~i~~ 78 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAKVPF-FTISG 78 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCE-EEECS
T ss_pred eEEEECcCCCCHHHHHHHHHHHcCCCE-EEEeH
Confidence 466899999999999999999887655 44443
No 88
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.26 E-value=8.9e-05 Score=53.22 Aligned_cols=32 Identities=3% Similarity=-0.309 Sum_probs=27.1
Q ss_pred eeeeccCCCchhHHHHHHhcCCC--ceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD--LFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~--~eI~IsaDSm 57 (115)
+.|+||+|||||+|+..|+..++ ..+ +..|..
T Consensus 9 i~i~G~~GsGKSTl~~~l~~~~~~~i~~-v~~d~~ 42 (211)
T 3asz_A 9 IGIAGGTASGKTTLAQALARTLGERVAL-LPMDHY 42 (211)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHGGGEEE-EEGGGC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeEE-EecCcc
Confidence 34899999999999999999877 667 888874
No 89
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.25 E-value=7.7e-05 Score=57.45 Aligned_cols=37 Identities=8% Similarity=-0.124 Sum_probs=30.7
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLD 64 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgld 64 (115)
+.|.||.|||||+++..||+.++... ++.|. +||++.
T Consensus 12 i~i~G~~GsGKsTla~~la~~lg~~~-~d~g~--~~r~~~ 48 (233)
T 3r20_A 12 VAVDGPAGTGKSSVSRGLARALGARY-LDTGA--MYRIAT 48 (233)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCEE-EEHHH--HHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCc-ccCCc--HHHHHH
Confidence 56899999999999999999999888 66664 576643
No 90
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.24 E-value=0.00011 Score=53.89 Aligned_cols=27 Identities=7% Similarity=-0.080 Sum_probs=23.5
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
+++|.||+|+|||.+|..+|+.++...
T Consensus 41 ~vll~G~~GtGKT~la~~la~~~~~~~ 67 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATEAQVPF 67 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 456799999999999999999887655
No 91
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.24 E-value=0.00012 Score=57.38 Aligned_cols=33 Identities=15% Similarity=-0.091 Sum_probs=27.4
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
++++.||+|+|||.+|..||+.++... +..|..
T Consensus 53 ~vll~GppGtGKT~la~~ia~~~~~~~-~~~~~~ 85 (363)
T 3hws_A 53 NILLIGPTGSGKTLLAETLARLLDVPF-TMADAT 85 (363)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCCE-EEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCE-EEechH
Confidence 466899999999999999999998876 555443
No 92
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.24 E-value=0.00011 Score=55.58 Aligned_cols=33 Identities=9% Similarity=-0.096 Sum_probs=27.6
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeec
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVY 60 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVY 60 (115)
+.|+||.|||||+++..||++++... + |+=.+|
T Consensus 30 I~I~G~~GsGKSTl~k~La~~Lg~~~-~--d~g~i~ 62 (252)
T 4e22_A 30 ITVDGPSGAGKGTLCKALAESLNWRL-L--DSGAIY 62 (252)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCEE-E--EHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCc-C--CCCcee
Confidence 44899999999999999999999877 4 555555
No 93
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.23 E-value=4e-05 Score=54.67 Aligned_cols=30 Identities=7% Similarity=-0.300 Sum_probs=24.6
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQV 55 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaD 55 (115)
|+|+|+.|||||+++..||+.++... +++|
T Consensus 13 I~l~G~~GsGKST~~~~L~~~l~~~~-~~~~ 42 (212)
T 2wwf_A 13 IVFEGLDRSGKSTQSKLLVEYLKNNN-VEVK 42 (212)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT-CCEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcC-CcEE
Confidence 56899999999999999999876554 4444
No 94
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.21 E-value=0.00017 Score=51.04 Aligned_cols=26 Identities=4% Similarity=-0.146 Sum_probs=22.6
Q ss_pred eeeeccCCCchhHHHHHHhcCCC-ceE
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD-LFC 50 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~-~eI 50 (115)
|+|+|+.|||||+++-.||+.++ ..+
T Consensus 7 I~l~G~~GsGKsT~~~~L~~~l~g~~~ 33 (204)
T 2v54_A 7 IVFEGLDKSGKTTQCMNIMESIPANTI 33 (204)
T ss_dssp EEEECCTTSSHHHHHHHHHHTSCGGGE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHCCCce
Confidence 56799999999999999999995 345
No 95
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.21 E-value=0.00019 Score=49.58 Aligned_cols=23 Identities=4% Similarity=-0.285 Sum_probs=20.2
Q ss_pred eeeeeccCCCchhHHHHHHhcCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~ 46 (115)
.++|.||+|+|||.+|..+++..
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSS
T ss_pred CEEEECCCCCCHHHHHHHHHHhC
Confidence 35679999999999999999875
No 96
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.21 E-value=6.9e-05 Score=57.92 Aligned_cols=33 Identities=3% Similarity=-0.363 Sum_probs=26.8
Q ss_pred eeeeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
..+|+.||+|+|||.||..+|+.++..+ +..+.
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l~~~~-i~v~~ 69 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKMGINP-IMMSA 69 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHTCCC-EEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCE-EEEeH
Confidence 3566799999999999999999998766 54443
No 97
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.20 E-value=0.00012 Score=51.41 Aligned_cols=28 Identities=7% Similarity=-0.304 Sum_probs=23.6
Q ss_pred eeeeccCCCchhHHHHHHhcCC---CceEeec
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP---DLFCRTY 53 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~---~~eI~Is 53 (115)
|+|.|+.|||||+++..|++.+ +..+ +.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v-~~ 33 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKV-IL 33 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-E-EE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeE-EE
Confidence 6789999999999999999988 6666 53
No 98
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.18 E-value=0.00029 Score=51.13 Aligned_cols=63 Identities=16% Similarity=0.103 Sum_probs=34.0
Q ss_pred cceeeeeccCCCceeEeeeeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCceecCCCCHHHhcCCCeee
Q psy7554 7 THYQVNLLTGTPDQVYLSYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHL 82 (115)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHL 82 (115)
+.|-.|=++=.+.+++. |+||+|||||+|...|+.-+. .+.++ .++.+.+|...+++++.+.+
T Consensus 8 ~~~~~~~~~i~~Gei~~---l~GpnGsGKSTLl~~l~gl~~-~i~~~---------~~~~~~~~~~~~~~~i~~~~ 70 (207)
T 1znw_A 8 TKPTARGQPAAVGRVVV---LSGPSAVGKSTVVRCLRERIP-NLHFS---------VSATTRAPRPGEVDGVDYHF 70 (207)
T ss_dssp -----------CCCEEE---EECSTTSSHHHHHHHHHHHST-TCEEC---------CCEESSCCCTTCCBTTTBEE
T ss_pred CCcCCCCCCCCCCCEEE---EECCCCCCHHHHHHHHHhhCC-ceEEc---------ccccccCCcccccCCCeeEe
Confidence 33444445666778776 899999999999999986654 22121 24555555444455555444
No 99
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.17 E-value=0.00017 Score=54.62 Aligned_cols=32 Identities=6% Similarity=-0.101 Sum_probs=26.1
Q ss_pred eeeeccCCCchhHHHHHHhcC---CCceEee--cccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDG---PDLFCRT--YQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~---~~~eI~I--saDSm 57 (115)
|+|+|+.|||||++|..||+. .+..+ + +.|.+
T Consensus 7 Ivl~G~pGSGKSTla~~La~~L~~~g~~~-i~~~~D~~ 43 (260)
T 3a4m_A 7 IILTGLPGVGKSTFSKNLAKILSKNNIDV-IVLGSDLI 43 (260)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCE-EEECTHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCEE-EEECchHH
Confidence 568999999999999999987 56555 4 77754
No 100
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.17 E-value=0.00014 Score=54.45 Aligned_cols=29 Identities=7% Similarity=-0.018 Sum_probs=26.6
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQ 54 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~Isa 54 (115)
++|.||.||||+++|-.||++++..- ||+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~-ist 31 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVH-IST 31 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEE-EEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeE-EcH
Confidence 57899999999999999999999887 776
No 101
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.17 E-value=0.00011 Score=51.92 Aligned_cols=24 Identities=17% Similarity=-0.086 Sum_probs=21.6
Q ss_pred eeeeccCCCchhHHHHHHhcCCCc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDL 48 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~ 48 (115)
|+|+|+.|||||+++..||+.++.
T Consensus 7 I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 7 IAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhh
Confidence 568999999999999999998765
No 102
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.15 E-value=8.5e-05 Score=55.19 Aligned_cols=31 Identities=6% Similarity=-0.199 Sum_probs=24.8
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
++|+||.|||||+|+..||++++..- ++.|.
T Consensus 30 i~l~G~~GsGKSTl~k~La~~lg~~~-~~~G~ 60 (246)
T 2bbw_A 30 AVILGPPGSGKGTVCQRIAQNFGLQH-LSSGH 60 (246)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCCC-EEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeE-ecHHH
Confidence 45799999999999999998887655 44443
No 103
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.14 E-value=0.00024 Score=54.73 Aligned_cols=31 Identities=6% Similarity=-0.146 Sum_probs=25.4
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeeccc
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQV 55 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaD 55 (115)
.++|.||+|+|||.||..+|..++... +..+
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~~~~~~-i~v~ 81 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANECQANF-ISIK 81 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTTCEE-EEEC
T ss_pred eEEEECCCCcCHHHHHHHHHHHhCCCE-EEEE
Confidence 345799999999999999999888766 4444
No 104
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.13 E-value=8.4e-05 Score=55.23 Aligned_cols=31 Identities=6% Similarity=-0.136 Sum_probs=24.9
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeeccc
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQV 55 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaD 55 (115)
+++|.||+|+|||.||..+|+.++..+ +..+
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~~~~~-~~v~ 76 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEAHVPF-FSMG 76 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHHTCCC-CCCC
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCE-EEec
Confidence 356799999999999999999877655 4443
No 105
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.09 E-value=0.00014 Score=53.81 Aligned_cols=32 Identities=6% Similarity=-0.204 Sum_probs=27.7
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
+.|+|+.|||||+++..||+.++... +++|.+
T Consensus 19 i~i~G~~gsGKst~~~~l~~~lg~~~-~d~d~~ 50 (236)
T 1q3t_A 19 IAIDGPASSGKSTVAKIIAKDFGFTY-LDTGAM 50 (236)
T ss_dssp EEEECSSCSSHHHHHHHHHHHHCCEE-EEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCce-ecCCCe
Confidence 55799999999999999999999888 776654
No 106
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.08 E-value=0.00023 Score=54.55 Aligned_cols=33 Identities=9% Similarity=-0.134 Sum_probs=26.3
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceE-eeccce
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFC-RTYQVY 56 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI-~IsaDS 56 (115)
+++|.||+|+|||.||..+|+.++... .+++..
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~ 90 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEMSANIKTTAAPM 90 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhCCCeEEecchh
Confidence 567899999999999999999887654 245433
No 107
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.08 E-value=0.00029 Score=56.02 Aligned_cols=33 Identities=6% Similarity=-0.166 Sum_probs=27.2
Q ss_pred eeeeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
.++||.||+|+|||.||..+|+.++..+ +..+.
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~~~~~~-~~v~~ 181 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAESNATF-FNISA 181 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHTTCEE-EEECS
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcCcE-EEeeH
Confidence 3567899999999999999999998876 44433
No 108
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.07 E-value=0.00019 Score=50.46 Aligned_cols=37 Identities=8% Similarity=-0.097 Sum_probs=27.2
Q ss_pred eeeeccCCCchhHHHHHHhcCC---CceEeeccceeeeccC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP---DLFCRTYQVYLMVYKG 62 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~---~~eI~IsaDSmQVYkg 62 (115)
++|+|+.|||||+++..|++.+ +... +..|+-.+-+.
T Consensus 8 i~l~G~~GsGKST~~~~L~~~l~~~g~~~-i~~d~~~~~~~ 47 (179)
T 2pez_A 8 VWLTGLSGAGKTTVSMALEEYLVCHGIPC-YTLDGDNIRQG 47 (179)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCE-EEEEHHHHTTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhCCCcE-EEECChHHHHH
Confidence 3489999999999999999876 5455 55555444443
No 109
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.07 E-value=0.00019 Score=51.77 Aligned_cols=28 Identities=7% Similarity=-0.165 Sum_probs=23.1
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhcCC
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~~~ 46 (115)
+.+.+++. |+||.|||||+|+..||+.+
T Consensus 22 ~~~g~~i~---l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 22 DQKGCVIW---VTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp TSCCEEEE---EECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEE---EECCCCCCHHHHHHHHHHHH
Confidence 44555544 79999999999999999887
No 110
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.06 E-value=0.00028 Score=50.23 Aligned_cols=23 Identities=4% Similarity=-0.230 Sum_probs=20.1
Q ss_pred eeeeeccCCCchhHHHHHHhcCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~ 46 (115)
+++|.||+|+|||.|+..+|+.+
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 56689999999999999998765
No 111
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.06 E-value=0.00032 Score=55.46 Aligned_cols=27 Identities=7% Similarity=-0.112 Sum_probs=24.2
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
++||.||+|+|||.||..+|+.++...
T Consensus 119 ~vLl~GppGtGKT~la~aia~~~~~~~ 145 (357)
T 3d8b_A 119 GILLFGPPGTGKTLIGKCIASQSGATF 145 (357)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHTTCEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeE
Confidence 456799999999999999999998766
No 112
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.02 E-value=9.5e-05 Score=52.67 Aligned_cols=24 Identities=8% Similarity=-0.100 Sum_probs=21.1
Q ss_pred eeeeccCCCchhHHHHHHhcCCCc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDL 48 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~ 48 (115)
|+|+|+.|||||+++..||+.++.
T Consensus 12 I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 12 IVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 567999999999999999987654
No 113
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.02 E-value=0.00034 Score=49.48 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=19.9
Q ss_pred eeeeccCCCchhHHHHHHhcCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~ 46 (115)
+.|+||+|||||+++..|+..+
T Consensus 9 i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 9 IVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 3489999999999999999887
No 114
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.02 E-value=0.00023 Score=54.05 Aligned_cols=29 Identities=3% Similarity=-0.221 Sum_probs=26.1
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQ 54 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~Isa 54 (115)
++|.||.||||+++|-.||++++..- ||+
T Consensus 32 I~llGpPGsGKgTqa~~L~~~~g~~h-Ist 60 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQKFHFNH-LSS 60 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHCCEE-ECH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCce-EcH
Confidence 45799999999999999999999887 776
No 115
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.01 E-value=0.00051 Score=51.10 Aligned_cols=34 Identities=12% Similarity=-0.154 Sum_probs=25.8
Q ss_pred eeeeeccCCCchhHHHHHHhcCCC---c-eEeecccee
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPD---L-FCRTYQVYL 57 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~---~-eI~IsaDSm 57 (115)
+++|.||+|+|||.+|..+++..+ . .+.++|.++
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL 68 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGS
T ss_pred CEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCC
Confidence 567899999999999999998764 2 333666543
No 116
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.01 E-value=0.00027 Score=54.77 Aligned_cols=32 Identities=6% Similarity=-0.151 Sum_probs=26.3
Q ss_pred eeeeeeccCCCchhHHHHHHhcCCCceEeeccc
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQV 55 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~~~eI~IsaD 55 (115)
..+|+.||+|+|||.||..+|+..+..+ +..+
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~~~~~-~~v~ 83 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEANSTF-FSVS 83 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHHTCEE-EEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHCCCE-EEEc
Confidence 3566899999999999999999988766 4443
No 117
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.00 E-value=0.00026 Score=48.90 Aligned_cols=24 Identities=0% Similarity=-0.261 Sum_probs=21.5
Q ss_pred eeeeeccCCCchhHHHHHHhcCCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPD 47 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~ 47 (115)
.++|.||+|+|||.+|..+++..+
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCTTS
T ss_pred cEEEECCCCccHHHHHHHHHHhCC
Confidence 366799999999999999998877
No 118
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.97 E-value=0.00038 Score=49.59 Aligned_cols=23 Identities=4% Similarity=-0.200 Sum_probs=19.4
Q ss_pred eeeeeccCCCchhHHHHHHhcCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~ 46 (115)
.++|.||+|+|||.|+..+|..+
T Consensus 56 ~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 56 GLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999988654
No 119
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.97 E-value=0.00028 Score=57.68 Aligned_cols=36 Identities=17% Similarity=0.045 Sum_probs=28.1
Q ss_pred eeeeeccCCCchhHHHHHHhcCCC--ceEeeccceeeec
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPD--LFCRTYQVYLMVY 60 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~--~eI~IsaDSmQVY 60 (115)
++|+.||+|+|||.||..+|+.++ ... +..+.-.++
T Consensus 65 ~iLl~GppGtGKT~la~ala~~l~~~~~~-~~~~~~~~~ 102 (456)
T 2c9o_A 65 AVLLAGPPGTGKTALALAIAQELGSKVPF-CPMVGSEVY 102 (456)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCTTSCE-EEEEGGGGC
T ss_pred eEEEECCCcCCHHHHHHHHHHHhCCCceE-EEEeHHHHH
Confidence 467899999999999999999887 555 555544444
No 120
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.96 E-value=0.00048 Score=53.92 Aligned_cols=27 Identities=7% Similarity=-0.076 Sum_probs=23.0
Q ss_pred eeeeeccCCCchhHHHHHHhcCC-CceE
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGP-DLFC 50 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~-~~eI 50 (115)
++|+.||+|+|||.||..+|+.+ +...
T Consensus 47 ~iLL~GppGtGKT~la~ala~~~~~~~~ 74 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVATEANNSTF 74 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHTTSCEE
T ss_pred eEEEECCCCccHHHHHHHHHHHcCCCcE
Confidence 56679999999999999999988 5444
No 121
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.95 E-value=0.00041 Score=48.79 Aligned_cols=22 Identities=9% Similarity=-0.177 Sum_probs=18.7
Q ss_pred eeeeccCCCchhHHHHHHhcCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~ 46 (115)
++|.||+|+|||.|+..+|..+
T Consensus 41 ~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 41 LTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp EEECCSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 3479999999999999888654
No 122
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.95 E-value=0.00038 Score=57.81 Aligned_cols=33 Identities=6% Similarity=-0.099 Sum_probs=27.1
Q ss_pred EeeeeeeccCCCchhHHHHHHhcCCCceEeeccc
Q psy7554 22 YLSYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQV 55 (115)
Q Consensus 22 ~~~~li~GpTasGKS~lai~LA~~~~~eI~IsaD 55 (115)
.-.+||+||+|+|||.+|..+|+.++..+ +..+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~~~~-i~in 109 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDI-LEQN 109 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTCEE-EEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCE-EEEe
Confidence 34567899999999999999999998776 4433
No 123
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.95 E-value=0.00044 Score=50.29 Aligned_cols=22 Identities=9% Similarity=-0.046 Sum_probs=18.5
Q ss_pred eeeeccCCCchhHHHHHHhcCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~ 46 (115)
+.|+||+|||||+|...|+..+
T Consensus 7 i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 7 VVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 3489999999999999888644
No 124
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.93 E-value=0.00041 Score=48.10 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=19.7
Q ss_pred eeeeccCCCchhHHHHHHhcCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~ 46 (115)
++|.||+|+|||.|+..+|+.+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999865
No 125
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.89 E-value=0.00025 Score=56.20 Aligned_cols=35 Identities=6% Similarity=-0.167 Sum_probs=28.1
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeeccceeee
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMV 59 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQV 59 (115)
.+|+.||+|+|||.||..+|+.++..+ +..+.-.+
T Consensus 86 ~iLL~GppGtGKT~la~ala~~~~~~~-~~v~~~~l 120 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATEANSTF-FSVSSSDL 120 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHTCEE-EEEEHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCE-EEeeHHHH
Confidence 466899999999999999999998876 55544333
No 126
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.89 E-value=0.00027 Score=53.41 Aligned_cols=34 Identities=12% Similarity=-0.078 Sum_probs=26.1
Q ss_pred eeeeeeccCCCchhHHHHHHhcCCCceEe-eccce
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGPDLFCR-TYQVY 56 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~~~eI~-IsaDS 56 (115)
.+++|.||+|+|||.||..+|+.++.... +++..
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 73 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPA 73 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc
Confidence 35678999999999999999988775541 45443
No 127
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.88 E-value=0.00047 Score=51.00 Aligned_cols=26 Identities=12% Similarity=-0.024 Sum_probs=22.3
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
++|.||+|+|||.|+..+|...+...
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~~~ 77 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARVPF 77 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 56799999999999999998776544
No 128
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.87 E-value=0.00043 Score=50.23 Aligned_cols=37 Identities=5% Similarity=-0.221 Sum_probs=28.1
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCCC-----ceEeecccee
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGPD-----LFCRTYQVYL 57 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~~-----~eI~IsaDSm 57 (115)
.+.+++. |+||+|||||+|+..|+..+. ... |+.|..
T Consensus 20 ~~g~~v~---I~G~sGsGKSTl~~~l~~~~~~~g~~~g~-v~~d~~ 61 (208)
T 3c8u_A 20 PGRQLVA---LSGAPGSGKSTLSNPLAAALSAQGLPAEV-VPMDGF 61 (208)
T ss_dssp CSCEEEE---EECCTTSCTHHHHHHHHHHHHHTTCCEEE-EESGGG
T ss_pred CCCeEEE---EECCCCCCHHHHHHHHHHHHhhcCCceEE-EecCCC
Confidence 3555555 899999999999999997664 344 777764
No 129
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.85 E-value=0.00057 Score=47.63 Aligned_cols=23 Identities=22% Similarity=0.127 Sum_probs=19.9
Q ss_pred eeeeeccCCCchhHHHHHHhcCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~ 46 (115)
.++|.||.|+|||.|+..+++.+
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999998765
No 130
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.83 E-value=0.00031 Score=54.12 Aligned_cols=32 Identities=3% Similarity=-0.344 Sum_probs=27.6
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
++|+||.|||||+++..||+.++... +..|.+
T Consensus 51 i~l~G~~GsGKSTl~~~La~~lg~~~-~d~d~~ 82 (250)
T 3nwj_A 51 MYLVGMMGSGKTTVGKIMARSLGYTF-FDCDTL 82 (250)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHTCEE-EEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCcE-EeCcHH
Confidence 44799999999999999999999888 766653
No 131
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.81 E-value=0.0003 Score=51.08 Aligned_cols=23 Identities=9% Similarity=-0.145 Sum_probs=20.7
Q ss_pred eeeeccCCCchhHHHHHHhcCCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD 47 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~ 47 (115)
++|+|+.|||||+++..|++.++
T Consensus 28 i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 28 IWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 45799999999999999998876
No 132
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.80 E-value=0.00037 Score=53.70 Aligned_cols=25 Identities=8% Similarity=-0.039 Sum_probs=22.0
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCc
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDL 48 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~ 48 (115)
++||.||+|+|||.||..+|+.++.
T Consensus 72 ~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 5668999999999999999988764
No 133
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.79 E-value=0.00035 Score=53.60 Aligned_cols=26 Identities=4% Similarity=-0.126 Sum_probs=22.4
Q ss_pred eEeeeeeeccCCCchhHHHHHHhcCC
Q psy7554 21 VYLSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 21 ~~~~~li~GpTasGKS~lai~LA~~~ 46 (115)
-+.+++|.||+|+|||.|+..+|+.+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 45677789999999999999999865
No 134
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.78 E-value=0.0011 Score=49.66 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=33.2
Q ss_pred ceeEeeeeeeccCCCchhHHHHHHhcCCCc-eEeeccceeeeccCCceecCCCCHHHhcCCCeeeec
Q psy7554 19 DQVYLSYLSCLPDSVCPHAHQVDLTDGPDL-FCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLLD 84 (115)
Q Consensus 19 ~~~~~~~li~GpTasGKS~lai~LA~~~~~-eI~IsaDSmQVYkgldIgTAKPs~eE~~~IpHHLid 84 (115)
.+++. |+||.|||||+|...|+..... .+ .-...+.|-.|...|+.++-+++.+
T Consensus 16 G~ii~---l~GpsGsGKSTLlk~L~g~~~p~~~---------~g~v~~ttr~~~~~e~~gi~y~fq~ 70 (219)
T 1s96_A 16 GTLYI---VSAPSGAGKSSLIQALLKTQPLYDT---------QVSVSHTTRQPRPGEVHGEHYFFVN 70 (219)
T ss_dssp CCEEE---EECCTTSCHHHHHHHHHHHSCTTTE---------EECCCEECSCCCTTCCBTTTBEECC
T ss_pred CcEEE---EECCCCCCHHHHHHHHhccCCCCce---------EEEEEecCCCCCcccccCceEEECC
Confidence 34444 8999999999999998875541 11 0022334444544556667666653
No 135
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.74 E-value=0.00061 Score=51.20 Aligned_cols=23 Identities=22% Similarity=0.121 Sum_probs=20.3
Q ss_pred eeeeeccCCCchhHHHHHHhcCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~ 46 (115)
.+++.||+|+|||.+|..+|+.+
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHHH
Confidence 34589999999999999999876
No 136
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.73 E-value=0.00037 Score=49.26 Aligned_cols=23 Identities=9% Similarity=-0.198 Sum_probs=20.2
Q ss_pred eeeeccCCCchhHHHHHHhcCCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD 47 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~ 47 (115)
++++|+.|||||+++..||+.++
T Consensus 16 i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 16 VWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999998764
No 137
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.71 E-value=0.0005 Score=52.39 Aligned_cols=23 Identities=9% Similarity=-0.257 Sum_probs=20.2
Q ss_pred eeeeeccCCCchhHHHHHHhcCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~ 46 (115)
+++|.||+|+|||.|+..+++.+
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 45579999999999999999876
No 138
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.69 E-value=0.00067 Score=56.55 Aligned_cols=34 Identities=6% Similarity=-0.176 Sum_probs=28.3
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeeccceee
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLM 58 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQ 58 (115)
.+|+.||.|+|||.||..+|..++..+ ++.+.-+
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~~~~~~-~~v~~~~ 241 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANSTKAAF-IRVNGSE 241 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHHHTCEE-EEEEGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCe-EEEecch
Confidence 466899999999999999999999887 6555443
No 139
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.69 E-value=0.00098 Score=48.03 Aligned_cols=24 Identities=8% Similarity=-0.147 Sum_probs=20.2
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHhc
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA~ 44 (115)
+.++++ |+||+|+|||.|+.++|.
T Consensus 22 ~G~~~~---i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 22 ERNVVL---LSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp TTCEEE---EEECTTSSHHHHHHHHHH
T ss_pred CCcEEE---EECCCCCCHHHHHHHHHH
Confidence 456665 999999999999988874
No 140
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.68 E-value=0.001 Score=47.14 Aligned_cols=33 Identities=0% Similarity=-0.223 Sum_probs=24.0
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
+.+++. |+||.|||||+|+..+.. +..+ ++.|.
T Consensus 8 ~gei~~---l~G~nGsGKSTl~~~~~~--~~~~-~~~d~ 40 (171)
T 4gp7_A 8 ELSLVV---LIGSSGSGKSTFAKKHFK--PTEV-ISSDF 40 (171)
T ss_dssp SSEEEE---EECCTTSCHHHHHHHHSC--GGGE-EEHHH
T ss_pred CCEEEE---EECCCCCCHHHHHHHHcc--CCeE-EccHH
Confidence 556666 899999999999987642 3344 66553
No 141
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.67 E-value=0.00051 Score=53.12 Aligned_cols=40 Identities=18% Similarity=0.130 Sum_probs=31.6
Q ss_pred ccCCCceeEeeeeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 14 LTGTPDQVYLSYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 14 ~~~~~~~~~~~~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
+.|.|+. ..+++.||.|+|||.+|..||+.+.|.+ ++.++
T Consensus 52 ~~~iPkk--n~ili~GPPGtGKTt~a~ala~~l~g~i-~~fan 91 (212)
T 1tue_A 52 LKGTPKK--NCLVFCGPANTGKSYFGMSFIHFIQGAV-ISFVN 91 (212)
T ss_dssp HHTCTTC--SEEEEESCGGGCHHHHHHHHHHHHTCEE-CCCCC
T ss_pred HhcCCcc--cEEEEECCCCCCHHHHHHHHHHHhCCCe-eeEEe
Confidence 4466652 3357899999999999999999999988 76553
No 142
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.67 E-value=0.0012 Score=46.92 Aligned_cols=25 Identities=8% Similarity=-0.051 Sum_probs=21.3
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhc
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~ 44 (115)
.+.++++ |+||+|||||.|+..+|.
T Consensus 18 ~~G~~~~---i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQ---VYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEE---EECSTTSSHHHHHHHHHH
T ss_pred cCCEEEE---EECCCCCCHHHHHHHHHH
Confidence 3556666 999999999999999986
No 143
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.65 E-value=0.00087 Score=50.55 Aligned_cols=26 Identities=12% Similarity=-0.024 Sum_probs=22.2
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
++|.||+|+|||.|+..||...+...
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~~~ 101 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARVPF 101 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred EEEECCCcChHHHHHHHHHHHcCCCE
Confidence 56899999999999999998776444
No 144
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.65 E-value=0.0012 Score=47.09 Aligned_cols=24 Identities=4% Similarity=-0.248 Sum_probs=20.9
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHhc
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA~ 44 (115)
+.+++. |+||+|||||.|+..||.
T Consensus 24 ~G~~~~---l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 24 TQAITE---VFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SSEEEE---EEESTTSSHHHHHHHHHH
T ss_pred CCcEEE---EECCCCCCHHHHHHHHHH
Confidence 566766 999999999999999985
No 145
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.64 E-value=0.001 Score=54.39 Aligned_cols=28 Identities=7% Similarity=-0.100 Sum_probs=23.7
Q ss_pred eeeeeeccCCCchhHHHHHHhcCC-CceE
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGP-DLFC 50 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~-~~eI 50 (115)
-++|+.||+|+|||.||..+|..+ +..+
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~~~~~~ 196 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEANNSTF 196 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHCCSSEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCCCE
Confidence 456789999999999999999988 5544
No 146
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.62 E-value=0.00077 Score=51.83 Aligned_cols=23 Identities=9% Similarity=-0.256 Sum_probs=20.2
Q ss_pred eeeeeccCCCchhHHHHHHhcCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~ 46 (115)
+++|.||+|+|||.|+..+++.+
T Consensus 47 ~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999864
No 147
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.59 E-value=0.001 Score=53.61 Aligned_cols=39 Identities=5% Similarity=-0.099 Sum_probs=33.5
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCCc
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLD 64 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgld 64 (115)
.++|+|+.|+|||.+|.+|.++ +..+ |+-|..-|++.=+
T Consensus 146 ~vl~~G~sG~GKSt~a~~l~~~-g~~l-v~dD~~~i~~~~~ 184 (314)
T 1ko7_A 146 GVLITGDSGIGKSETALELIKR-GHRL-VADDNVEIREISK 184 (314)
T ss_dssp EEEEEESTTSSHHHHHHHHHHT-TCEE-EESSEEEEEESSS
T ss_pred EEEEEeCCCCCHHHHHHHHHhc-CCce-ecCCeEEEEEcCC
Confidence 4668999999999999999886 6778 8889999988665
No 148
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.59 E-value=0.0013 Score=47.41 Aligned_cols=23 Identities=4% Similarity=-0.083 Sum_probs=19.5
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHh
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLT 43 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA 43 (115)
+.+++. |+||+|||||+|+..|+
T Consensus 29 ~G~~~~---l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVL---LTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEE---EECCTTSSHHHHHHHHH
T ss_pred CCcEEE---EEeCCCCCHHHHHHHHH
Confidence 456665 89999999999998877
No 149
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.57 E-value=0.00067 Score=53.11 Aligned_cols=33 Identities=3% Similarity=-0.144 Sum_probs=26.1
Q ss_pred eeeeccCCCchhHHHHHHhcCCC-------ceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD-------LFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~-------~eI~IsaDSm 57 (115)
+.|+||+|||||+|+..|++.++ ..++|+.|+.
T Consensus 34 i~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 34 IFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 45899999999999999997764 2341499986
No 150
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.57 E-value=0.0014 Score=47.16 Aligned_cols=24 Identities=4% Similarity=-0.118 Sum_probs=20.0
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHhc
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA~ 44 (115)
+.++++ |+|++|+|||.|++++|.
T Consensus 29 ~G~l~~---i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 29 EGTTVL---LTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEE---EECCTTSSHHHHHHHHHH
T ss_pred CCeEEE---EEeCCCCCHHHHHHHHHH
Confidence 456666 999999999999999763
No 151
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.56 E-value=0.00095 Score=55.78 Aligned_cols=32 Identities=6% Similarity=-0.169 Sum_probs=27.1
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
.+|+.||.|+|||.||..+|...+..+ ++.+.
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e~~~~f-~~v~~ 248 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQTNATF-LKLAA 248 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCEE-EEEEG
T ss_pred eeEEECcCCCCHHHHHHHHHHHhCCCE-EEEeh
Confidence 566799999999999999999999877 55544
No 152
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.56 E-value=0.00094 Score=56.02 Aligned_cols=32 Identities=13% Similarity=-0.099 Sum_probs=26.9
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
.+++.||+|+|||.+|..||+.++... +..|.
T Consensus 52 ~iLl~GppGtGKT~lar~lA~~l~~~~-~~v~~ 83 (444)
T 1g41_A 52 NILMIGPTGVGKTEIARRLAKLANAPF-IKVEA 83 (444)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCCE-EEEEG
T ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCCc-eeecc
Confidence 466799999999999999999998776 55554
No 153
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.55 E-value=0.00091 Score=57.38 Aligned_cols=32 Identities=19% Similarity=0.124 Sum_probs=26.3
Q ss_pred ceeEeeeeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 19 DQVYLSYLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 19 ~~~~~~~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
+.-..++++.||||+|||.+|..||+.++..+
T Consensus 485 ~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~ 516 (758)
T 1r6b_X 485 HKPVGSFLFAGPTGVGKTEVTVQLSKALGIEL 516 (758)
T ss_dssp TSCSEEEEEECSTTSSHHHHHHHHHHHHTCEE
T ss_pred CCCceEEEEECCCCCcHHHHHHHHHHHhcCCE
Confidence 33344677999999999999999999987665
No 154
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.55 E-value=0.0007 Score=51.56 Aligned_cols=24 Identities=8% Similarity=-0.227 Sum_probs=21.5
Q ss_pred eeeeccCCCchhHHHHHHhcCCCc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDL 48 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~ 48 (115)
+||.||+|+|||.||..+|+.++.
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~~ 71 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLPE 71 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSCC
T ss_pred EEEECCCCccHHHHHHHHHHhCcc
Confidence 668999999999999999988763
No 155
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.55 E-value=0.0011 Score=51.80 Aligned_cols=23 Identities=0% Similarity=-0.208 Sum_probs=19.2
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
..++|.||+|+|||.||..+|..
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999888864
No 156
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.54 E-value=0.0012 Score=54.62 Aligned_cols=28 Identities=7% Similarity=-0.123 Sum_probs=24.8
Q ss_pred eeeeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
-++|+.||+|+|||.||..+|+..+...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f 78 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADV 78 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 4778999999999999999999987654
No 157
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.52 E-value=0.0017 Score=49.93 Aligned_cols=39 Identities=10% Similarity=-0.051 Sum_probs=28.1
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhcCC----CceEeecccee
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP----DLFCRTYQVYL 57 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~~~----~~eI~IsaDSm 57 (115)
-.|.+++. |+||||||||+|...|+..+ .|.|.+.-|.+
T Consensus 22 i~~g~~v~---i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i 64 (261)
T 2eyu_A 22 HRKMGLIL---VTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI 64 (261)
T ss_dssp GCSSEEEE---EECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSC
T ss_pred hCCCCEEE---EECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcc
Confidence 35777766 99999999999988777532 56664544443
No 158
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.52 E-value=0.00036 Score=49.72 Aligned_cols=23 Identities=9% Similarity=-0.169 Sum_probs=20.9
Q ss_pred eeeeccCCCchhHHHHHHhcCCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD 47 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~ 47 (115)
++|.||.|||||+++-.|++.++
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999998875
No 159
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=96.51 E-value=0.00083 Score=54.18 Aligned_cols=38 Identities=11% Similarity=0.051 Sum_probs=31.9
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGL 63 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkgl 63 (115)
.++|+|+.|+|||.+|++|.+ .+..+ |+=|-.-|++.=
T Consensus 149 gvli~G~sG~GKStlal~l~~-~G~~l-v~DD~v~i~~~~ 186 (312)
T 1knx_A 149 GVLLTGRSGIGKSECALDLIN-KNHLF-VGDDAIEIYRLG 186 (312)
T ss_dssp EEEEEESSSSSHHHHHHHHHT-TTCEE-EEEEEEEEEEET
T ss_pred EEEEEcCCCCCHHHHHHHHHH-cCCEE-EeCCEEEEEEeC
Confidence 467999999999999999976 56677 888888888653
No 160
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.51 E-value=0.0017 Score=46.08 Aligned_cols=25 Identities=0% Similarity=-0.179 Sum_probs=20.5
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHhcC
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA~~ 45 (115)
+.+++. |+||+|+|||.|+..+|..
T Consensus 22 ~G~~~~---i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 22 QGFFIA---LTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp TTCEEE---EECSTTSSHHHHHHHHHHH
T ss_pred CCCEEE---EEcCCCCCHHHHHHHHHHH
Confidence 456655 8999999999999998843
No 161
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.50 E-value=0.0011 Score=50.87 Aligned_cols=26 Identities=12% Similarity=0.008 Sum_probs=22.5
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
+++.||.|+|||.|+..||...+...
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~~ 72 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLNF 72 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCCE
Confidence 56899999999999999998877544
No 162
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.49 E-value=0.00095 Score=48.25 Aligned_cols=32 Identities=3% Similarity=-0.337 Sum_probs=23.8
Q ss_pred eeeeccCCCchhHHHHHHhcCC---CceEe-eccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP---DLFCR-TYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~---~~eI~-IsaDS 56 (115)
+.|+||.|||||+|+..|+..+ ++.+. ++.|.
T Consensus 25 i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 25 LGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 4589999999999999999754 45441 44564
No 163
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.49 E-value=0.00086 Score=51.42 Aligned_cols=27 Identities=15% Similarity=-0.086 Sum_probs=23.5
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
.+++.||+|+|||.||..+|+.++...
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~~~~~ 74 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTMDLDF 74 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTTCCE
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 467799999999999999999887654
No 164
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.46 E-value=0.0011 Score=51.65 Aligned_cols=33 Identities=6% Similarity=-0.254 Sum_probs=24.5
Q ss_pred eeeccCCCchhHHHHHHhcCCC-----ceEe-eccceee
Q psy7554 26 LSCLPDSVCPHAHQVDLTDGPD-----LFCR-TYQVYLM 58 (115)
Q Consensus 26 li~GpTasGKS~lai~LA~~~~-----~eI~-IsaDSmQ 58 (115)
-|+||.|||||+|+..|+..++ |.|. |++|..-
T Consensus 84 gI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 84 SIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp EEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred EEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 3899999999999999987443 3331 7778643
No 165
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.46 E-value=0.001 Score=50.53 Aligned_cols=23 Identities=4% Similarity=-0.272 Sum_probs=20.0
Q ss_pred eeeeeccCCCchhHHHHHHhcCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~ 46 (115)
+++|.||.|+|||.|+..+++.+
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999865
No 166
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.45 E-value=0.001 Score=55.61 Aligned_cols=32 Identities=6% Similarity=-0.106 Sum_probs=26.9
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
.+|+.||.|+|||.||..+|...+..+ ++.+.
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e~~~~~-~~v~~ 248 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAATIGANF-IFSPA 248 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCEE-EEEEG
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCE-EEEeh
Confidence 566799999999999999999998876 55443
No 167
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.45 E-value=0.0011 Score=55.44 Aligned_cols=31 Identities=10% Similarity=-0.020 Sum_probs=26.1
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeeccc
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQV 55 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaD 55 (115)
++||.||+|+|||.||..+|...+... +..+
T Consensus 240 ~vLL~GppGtGKT~lAraia~~~~~~f-v~vn 270 (489)
T 3hu3_A 240 GILLYGPPGTGKTLIARAVANETGAFF-FLIN 270 (489)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSEE-EEEE
T ss_pred cEEEECcCCCCHHHHHHHHHHHhCCCE-EEEE
Confidence 466799999999999999999998876 4443
No 168
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.43 E-value=0.0017 Score=49.53 Aligned_cols=32 Identities=9% Similarity=0.003 Sum_probs=25.8
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
|....+| |+.||+|+|||.++..+|+.++..+
T Consensus 45 ~~~~~~~---L~~G~~G~GKT~la~~la~~l~~~~ 76 (324)
T 3u61_B 45 GKIPHII---LHSPSPGTGKTTVAKALCHDVNADM 76 (324)
T ss_dssp TCCCSEE---EECSSTTSSHHHHHHHHHHHTTEEE
T ss_pred CCCCeEE---EeeCcCCCCHHHHHHHHHHHhCCCE
Confidence 4444444 4889999999999999999998776
No 169
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.43 E-value=0.00079 Score=49.65 Aligned_cols=34 Identities=6% Similarity=-0.180 Sum_probs=29.2
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeeeccC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKG 62 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQVYkg 62 (115)
|.|.||.|||||.++..||++++... + | -.+|+.
T Consensus 9 I~i~g~~GsGk~ti~~~la~~lg~~~-~--D-~~~~~~ 42 (201)
T 3fdi_A 9 IAIGREFGSGGHLVAKKLAEHYNIPL-Y--S-KELLDE 42 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHHTTCCE-E--C-HHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHhCcCE-E--C-HHHHHH
Confidence 56899999999999999999999988 5 5 556654
No 170
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.42 E-value=0.0019 Score=46.46 Aligned_cols=24 Identities=4% Similarity=-0.288 Sum_probs=20.7
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHhc
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA~ 44 (115)
+.+++. |+||+|+|||.|+..+|.
T Consensus 23 ~G~~~~---i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 23 TGSITE---MFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TTSEEE---EECCTTSSHHHHHHHHHH
T ss_pred CCeEEE---EECCCCCcHHHHHHHHHH
Confidence 456666 899999999999999987
No 171
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.42 E-value=0.00089 Score=54.81 Aligned_cols=25 Identities=4% Similarity=-0.156 Sum_probs=22.8
Q ss_pred EeeeeeeccCCCchhHHHHHHhcCC
Q psy7554 22 YLSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 22 ~~~~li~GpTasGKS~lai~LA~~~ 46 (115)
+.+++|.||+|+|||.|+..+|..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 7788999999999999999999765
No 172
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.39 E-value=0.0017 Score=45.68 Aligned_cols=22 Identities=0% Similarity=-0.224 Sum_probs=18.3
Q ss_pred eeeeccCCCchhHHHHHHhcCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~ 46 (115)
++|.||+|+|||.|+..++..+
T Consensus 39 ~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 39 IYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp EEEESSSTTTTCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 3479999999999999888643
No 173
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.38 E-value=0.0014 Score=50.14 Aligned_cols=23 Identities=4% Similarity=-0.335 Sum_probs=19.9
Q ss_pred eeeeeccCCCchhHHHHHHhcCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~ 46 (115)
+++|.||+|+|||.|+..+++.+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 35579999999999999998765
No 174
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.37 E-value=0.0013 Score=54.19 Aligned_cols=23 Identities=13% Similarity=-0.116 Sum_probs=20.3
Q ss_pred eeeeeccCCCchhHHHHHHhcCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~ 46 (115)
.+|+.||+|+|||.++..||+.+
T Consensus 203 ~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999875
No 175
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.35 E-value=0.0014 Score=54.60 Aligned_cols=32 Identities=6% Similarity=-0.147 Sum_probs=27.1
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
.+|+.||.|+|||.||..+|...+..+ ++.+.
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e~~~~f-~~v~~ 215 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHHTDCKF-IRVSG 215 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHHHTCEE-EEEEG
T ss_pred ceEEeCCCCCCHHHHHHHHHHhhCCCc-eEEEh
Confidence 456799999999999999999999877 55544
No 176
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.35 E-value=0.0012 Score=50.59 Aligned_cols=25 Identities=20% Similarity=0.126 Sum_probs=21.2
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCc
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDL 48 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~ 48 (115)
.++|.||.|+|||.++..+|+.++.
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3458999999999999999987653
No 177
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.34 E-value=0.0012 Score=51.63 Aligned_cols=27 Identities=7% Similarity=-0.098 Sum_probs=22.7
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
.+++.||+|+|||.|+..+|..++..+
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 345799999999999999998876544
No 178
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.33 E-value=0.0024 Score=49.63 Aligned_cols=34 Identities=12% Similarity=-0.131 Sum_probs=24.7
Q ss_pred eeeeeccCCCchhHHHHHHhcCC---Cce-Eeecccee
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGP---DLF-CRTYQVYL 57 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~---~~e-I~IsaDSm 57 (115)
+++|.||+|+|||.+|..+++.. +.. +.+||.++
T Consensus 27 ~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 27 TVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAAL 64 (304)
T ss_dssp CEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSC
T ss_pred cEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCC
Confidence 46689999999999999999733 332 22666543
No 179
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.27 E-value=0.0016 Score=52.15 Aligned_cols=33 Identities=6% Similarity=-0.250 Sum_probs=25.5
Q ss_pred eeeeccCCCchhHHHHHHhcCCC-------ceEeeccceee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD-------LFCRTYQVYLM 58 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~-------~eI~IsaDSmQ 58 (115)
+-|+||+|||||+|+..|+..++ ..+ |+.|..-
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~-i~~D~f~ 134 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV-ITTDGFL 134 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE-EEGGGGB
T ss_pred EEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE-Eeecccc
Confidence 55899999999999998886542 345 8888753
No 180
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.25 E-value=0.0017 Score=55.23 Aligned_cols=33 Identities=9% Similarity=-0.064 Sum_probs=27.4
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeecccee
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL 57 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm 57 (115)
.+|+.||.|+|||.||..+|.+.+..+ ++.+.-
T Consensus 245 GILLyGPPGTGKTlLAkAiA~e~~~~f-i~vs~s 277 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCARAVANRTDATF-IRVIGS 277 (467)
T ss_dssp EEEECSCTTSSHHHHHHHHHHHHTCEE-EEEEGG
T ss_pred ceEeeCCCCCcHHHHHHHHHhccCCCe-EEEEhH
Confidence 466799999999999999999999877 555443
No 181
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.0019 Score=54.47 Aligned_cols=35 Identities=3% Similarity=-0.197 Sum_probs=28.6
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeeccceeee
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMV 59 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQV 59 (115)
.+|+.||.|+|||.||..+|...+..+ ++.+.-.+
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~e~~~~f-i~v~~s~l 252 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVANQTSATF-LRIVGSEL 252 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHHHHTCEE-EEEESGGG
T ss_pred CCceECCCCchHHHHHHHHHHHhCCCE-EEEEHHHh
Confidence 466799999999999999999999877 66554433
No 182
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.22 E-value=0.002 Score=48.29 Aligned_cols=24 Identities=4% Similarity=-0.400 Sum_probs=21.8
Q ss_pred eeeeccCCCchhHHHHHHhcCCCc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDL 48 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~ 48 (115)
|+|.|+.|||||+++-.||+.+++
T Consensus 27 I~ieG~~GsGKST~~~~L~~~l~~ 50 (263)
T 1p5z_B 27 ISIEGNIAAGKSTFVNILKQLCED 50 (263)
T ss_dssp EEEECSTTSSHHHHHTTTGGGCTT
T ss_pred EEEECCCCCCHHHHHHHHHHhcCC
Confidence 568999999999999999999954
No 183
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.20 E-value=0.0029 Score=47.91 Aligned_cols=26 Identities=4% Similarity=-0.101 Sum_probs=21.6
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcC
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~ 45 (115)
.+.+++. |+||+|+|||+|+..+|..
T Consensus 33 ~~G~~~~---i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 33 RGGEVIM---VTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CTTCEEE---EEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEE---EEeCCCCCHHHHHHHHHHH
Confidence 4667776 9999999999999888743
No 184
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.19 E-value=0.0022 Score=47.29 Aligned_cols=26 Identities=12% Similarity=-0.245 Sum_probs=22.9
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
|+|.|+.|||||+++-.||+.+++.+
T Consensus 5 i~~~G~~g~GKtt~~~~l~~~l~~~~ 30 (241)
T 2ocp_A 5 LSIEGNIAVGKSTFVKLLTKTYPEWH 30 (241)
T ss_dssp EEEEECTTSSHHHHHHHHHHHCTTSE
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCe
Confidence 57899999999999999999996543
No 185
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.12 E-value=0.0031 Score=50.43 Aligned_cols=23 Identities=4% Similarity=-0.169 Sum_probs=19.7
Q ss_pred eeeeccCCCchhHHHHHHhcCCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD 47 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~ 47 (115)
++|+||||||||+|...|+...+
T Consensus 178 i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 178 IVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp EEEEESSSSCHHHHHHHHHTTSC
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 34899999999999999987653
No 186
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.11 E-value=0.0013 Score=50.85 Aligned_cols=30 Identities=0% Similarity=-0.279 Sum_probs=27.1
Q ss_pred eeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 26 LSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 26 li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
-|.||.|||||++|..||++++... |++|.
T Consensus 12 ~~~G~pGsGKsT~a~~L~~~~g~~~-is~gd 41 (230)
T 3gmt_A 12 ILLGAPGAGKGTQANFIKEKFGIPQ-ISTGD 41 (230)
T ss_dssp EEECCTTSCHHHHHHHHHHHHTCCE-ECHHH
T ss_pred eeECCCCCCHHHHHHHHHHHhCCCe-eechH
Confidence 4799999999999999999999988 88863
No 187
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.09 E-value=0.0021 Score=55.49 Aligned_cols=24 Identities=17% Similarity=0.088 Sum_probs=21.3
Q ss_pred eeeeeeccCCCchhHHHHHHhcCC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~ 46 (115)
.+++++||||+|||.+|..||+.+
T Consensus 522 ~~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 522 GSFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357799999999999999999875
No 188
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.06 E-value=0.0031 Score=51.44 Aligned_cols=34 Identities=9% Similarity=-0.185 Sum_probs=28.1
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhcCCCceEeec
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTDGPDLFCRTY 53 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~~~~~eI~Is 53 (115)
-.+.+++. |.||.|+|||+|+..||...+|.+ ++
T Consensus 166 i~~~~~i~---l~G~~GsGKSTl~~~l~~~~~g~~-~~ 199 (377)
T 1svm_A 166 IPKKRYWL---FKGPIDSGKTTLAAALLELCGGKA-LN 199 (377)
T ss_dssp CTTCCEEE---EECSTTSSHHHHHHHHHHHHCCEE-EC
T ss_pred cCCCCEEE---EECCCCCCHHHHHHHHHhhcCCcE-EE
Confidence 34555555 899999999999999999888887 55
No 189
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=96.05 E-value=0.004 Score=47.28 Aligned_cols=60 Identities=2% Similarity=-0.220 Sum_probs=41.8
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecccee--eeccCCceecCCCCHHHhcCCCeeeecccCCCCccC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYL--MVYKGLDVITNKVTPEEAEGIPHHLLDFLDPNTRFT 93 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSm--QVYkgldIgTAKPs~eE~~~IpHHLid~ldp~e~yS 93 (115)
+-++|.-|||||+++-.|++ ++..+ |.+|.. ++|.. +.+..++. +.++.-++++++...+
T Consensus 12 iglTGgigsGKStv~~~l~~-~g~~v-idaD~ia~~l~~~-----~~~~~~~i--~~~fG~~~~~~dg~ld 73 (210)
T 4i1u_A 12 IGLTGGIGSGKTTVADLFAA-RGASL-VDTDLIAHRITAP-----AGLAMPAI--EQTFGPAFVAADGSLD 73 (210)
T ss_dssp EEEECCTTSCHHHHHHHHHH-TTCEE-EEHHHHHHHHTST-----TCTTHHHH--HHHHCGGGBCTTSSBC
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCcE-EECcHHHHHHhcC-----CcHHHHHH--HHHhChhhcCCCCCCc
Confidence 55699999999999999998 99999 999973 55542 22333333 2345556666665555
No 190
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.04 E-value=0.0024 Score=53.62 Aligned_cols=27 Identities=7% Similarity=-0.029 Sum_probs=23.7
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
.++|.||+|+|||.|+..+|...+...
T Consensus 51 gvLL~GppGtGKT~Laraia~~~~~~f 77 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEANVPF 77 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCe
Confidence 356799999999999999999888765
No 191
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.02 E-value=0.0031 Score=46.92 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=19.8
Q ss_pred eeeeccCCCchhHHHHHHhcCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~ 46 (115)
+++.||.|+|||.++..+|+.+
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHh
Confidence 5589999999999999999875
No 192
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.02 E-value=0.0038 Score=47.12 Aligned_cols=24 Identities=13% Similarity=0.058 Sum_probs=19.4
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHhc
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA~ 44 (115)
+.++++ |+||.|||||.|+..+|.
T Consensus 29 ~G~i~~---i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGA---LVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEE---EEESTTSSHHHHHHHHHH
T ss_pred CCCEEE---EEcCCCCCHHHHHHHHHH
Confidence 345555 999999999999988873
No 193
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.01 E-value=0.0044 Score=50.00 Aligned_cols=38 Identities=13% Similarity=0.002 Sum_probs=25.5
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC----CceEeecccee
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP----DLFCRTYQVYL 57 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~----~~eI~IsaDSm 57 (115)
.|..+++ |+||||||||+|...|+..+ ++.|+..-|..
T Consensus 121 ~~~g~i~---I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~ 162 (356)
T 3jvv_A 121 VPRGLVL---VTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI 162 (356)
T ss_dssp CSSEEEE---EECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC
T ss_pred CCCCEEE---EECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH
Confidence 4556554 99999999999988776543 34552334543
No 194
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.00 E-value=0.0031 Score=47.85 Aligned_cols=23 Identities=17% Similarity=0.031 Sum_probs=20.3
Q ss_pred eeeeccCCCchhHHHHHHhcCCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD 47 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~ 47 (115)
+++.||+|+|||.++..+|+.++
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999998864
No 195
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.99 E-value=0.0032 Score=47.03 Aligned_cols=23 Identities=17% Similarity=0.044 Sum_probs=20.5
Q ss_pred eeeeccCCCchhHHHHHHhcCCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD 47 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~ 47 (115)
+++.||.|+|||.++..+|+.++
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhc
Confidence 56899999999999999998864
No 196
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.99 E-value=0.0045 Score=49.81 Aligned_cols=37 Identities=11% Similarity=-0.067 Sum_probs=25.9
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC----CceEeeccce
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP----DLFCRTYQVY 56 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~----~~eI~IsaDS 56 (115)
.+.++++ |+||||||||+|...|+..+ .|.|.+.-|.
T Consensus 134 ~~g~~i~---ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~ 174 (372)
T 2ewv_A 134 RKMGLIL---VTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP 174 (372)
T ss_dssp SSSEEEE---EECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESS
T ss_pred cCCCEEE---EECCCCCCHHHHHHHHHhhcCcCCCcEEEEeccc
Confidence 4566655 99999999999988887643 4666333343
No 197
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.98 E-value=0.0026 Score=54.91 Aligned_cols=23 Identities=13% Similarity=-0.116 Sum_probs=20.5
Q ss_pred eeeeeccCCCchhHHHHHHhcCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~ 46 (115)
++|+.||+|+|||.+|..||+.+
T Consensus 203 ~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 203 NPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999875
No 198
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.95 E-value=0.0038 Score=49.75 Aligned_cols=33 Identities=6% Similarity=-0.268 Sum_probs=27.3
Q ss_pred cCCCceeEeeeeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 15 TGTPDQVYLSYLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 15 ~~~~~~~~~~~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
+=.|.+++. |+||+|||||+|..-|+.-+.|.|
T Consensus 122 ~i~~Ge~va---IvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 122 GIPKKNCLA---FIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp TCTTCSEEE---EECSSSSSHHHHHHHHHHHHTCEE
T ss_pred EecCCCEEE---EECCCCCcHHHHHHHHhhhcCceE
Confidence 345667766 899999999999998887778888
No 199
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.95 E-value=0.0035 Score=46.85 Aligned_cols=30 Identities=7% Similarity=-0.154 Sum_probs=23.0
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeecc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQ 54 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~Isa 54 (115)
.+++||||+|||.+++.++...+..+.+-+
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~~~~~liv~ 140 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINELSTPTLIVV 140 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHSCSCEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 568999999999999988877755432334
No 200
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.93 E-value=0.0055 Score=44.89 Aligned_cols=43 Identities=12% Similarity=-0.017 Sum_probs=21.7
Q ss_pred ccccceeeeeccCCCceeEeeeeeeccCCCchhHHHHHHhcCC
Q psy7554 4 RPATHYQVNLLTGTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~li~GpTasGKS~lai~LA~~~ 46 (115)
++++-.|.-.-...+..--+-++++|++|+|||+|...|....
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 11 RENLYFQGGPGRQEPRNSQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp -----------------CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred cccchhhhcCCcCCCCCCceEEEEECCCCCCHHHHHHHHcCCC
Confidence 3344444433333333334568899999999999999998643
No 201
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.92 E-value=0.0043 Score=41.26 Aligned_cols=22 Identities=9% Similarity=-0.153 Sum_probs=19.6
Q ss_pred eeeeccCCCchhHHHHHHhcCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~ 46 (115)
++++|++++|||+|...+....
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6789999999999999998654
No 202
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.91 E-value=0.005 Score=45.41 Aligned_cols=25 Identities=4% Similarity=-0.386 Sum_probs=21.1
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
+.|.||.|||||+|+..|+.. ++.|
T Consensus 23 i~i~G~~GsGKSTl~~~L~~~-~g~v 47 (230)
T 2vp4_A 23 VLIEGNIGSGKTTYLNHFEKY-KNDI 47 (230)
T ss_dssp EEEECSTTSCHHHHHHTTGGG-TTTE
T ss_pred EEEECCCCCCHHHHHHHHHhc-cCCe
Confidence 348999999999999999987 6655
No 203
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.90 E-value=0.0024 Score=56.14 Aligned_cols=34 Identities=18% Similarity=-0.018 Sum_probs=25.8
Q ss_pred eeeeeeccCCCchhHHHHHHhcCC---Cce-Eeeccce
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGP---DLF-CRTYQVY 56 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~---~~e-I~IsaDS 56 (115)
.+++|.||||+|||.+|..||+.+ +.. +.|++..
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~ 626 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE 626 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechh
Confidence 467799999999999999999876 333 3355543
No 204
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.90 E-value=0.0042 Score=44.94 Aligned_cols=23 Identities=4% Similarity=-0.093 Sum_probs=20.0
Q ss_pred eeeeccCCCchhHHHHHHhcCCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD 47 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~ 47 (115)
+.|+||.|||||+|...|+..++
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999987665
No 205
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.90 E-value=0.0025 Score=51.02 Aligned_cols=28 Identities=14% Similarity=0.146 Sum_probs=23.8
Q ss_pred cCCCceeEeeeeeeccCCCchhHHHHHHhcCC
Q psy7554 15 TGTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 15 ~~~~~~~~~~~li~GpTasGKS~lai~LA~~~ 46 (115)
.++|.-+|+ .||+|+|||+++..+++++
T Consensus 42 ~~~~~~lli----~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 42 SSQNKLFYI----TNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TTCCCEEEE----ECCCSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEE----ECCCCCCHHHHHHHHHHHH
Confidence 467776766 9999999999999998776
No 206
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.87 E-value=0.0039 Score=52.51 Aligned_cols=31 Identities=6% Similarity=-0.355 Sum_probs=26.3
Q ss_pred eeeeccCCCchhHHHHHHhcCC-----CceEeeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP-----DLFCRTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~-----~~eI~IsaDS 56 (115)
|+++|..|||||.+|.+||+.+ +..+ +|.|.
T Consensus 38 IvlvGlpGSGKSTia~~La~~L~~~~~d~~v-~s~D~ 73 (520)
T 2axn_A 38 IVMVGLPARGKTYISKKLTRYLNWIGVPTKV-FNVGE 73 (520)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEE-EEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCCeEE-ecccH
Confidence 5679999999999999999875 5567 88886
No 207
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.87 E-value=0.0048 Score=54.41 Aligned_cols=26 Identities=12% Similarity=0.051 Sum_probs=23.4
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
++|+||+|||||.|+..||..++...
T Consensus 241 vLL~Gp~GtGKTtLarala~~l~~~~ 266 (806)
T 1ypw_A 241 ILLYGPPGTGKTLIARAVANETGAFF 266 (806)
T ss_dssp EEECSCTTSSHHHHHHHHHHTTTCEE
T ss_pred EEEECcCCCCHHHHHHHHHHHcCCcE
Confidence 56899999999999999999988765
No 208
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.87 E-value=0.0031 Score=48.24 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=19.3
Q ss_pred eeeeccCCCchhHHHHHHhcCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~ 46 (115)
++|.||.|+|||.++..+|+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5589999999999999998853
No 209
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.86 E-value=0.0066 Score=47.48 Aligned_cols=35 Identities=3% Similarity=-0.149 Sum_probs=25.5
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHhcCC------CceEeeccce
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLTDGP------DLFCRTYQVY 56 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA~~~------~~eI~IsaDS 56 (115)
+.+|+. ++||+|||||+++..||..+ ...+ +.+|.
T Consensus 104 ~g~vi~---lvG~~GsGKTTl~~~LA~~l~~~~G~~V~l-v~~D~ 144 (296)
T 2px0_A 104 HSKYIV---LFGSTGAGKTTTLAKLAAISMLEKHKKIAF-ITTDT 144 (296)
T ss_dssp CSSEEE---EEESTTSSHHHHHHHHHHHHHHTTCCCEEE-EECCC
T ss_pred CCcEEE---EECCCCCCHHHHHHHHHHHHHHhcCCEEEE-EecCc
Confidence 345555 89999999999999988432 2345 77776
No 210
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.85 E-value=0.0054 Score=47.85 Aligned_cols=25 Identities=12% Similarity=0.046 Sum_probs=21.0
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhc
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~ 44 (115)
.|.++++ |+|++|+|||+|++.+|.
T Consensus 66 ~~G~l~l---i~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 66 KRRNFVL---IAARPSMGKTAFALKQAK 90 (315)
T ss_dssp CTTCEEE---EECCTTSSHHHHHHHHHH
T ss_pred CCCcEEE---EEeCCCCCHHHHHHHHHH
Confidence 3566666 999999999999999884
No 211
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.83 E-value=0.0041 Score=46.33 Aligned_cols=22 Identities=5% Similarity=-0.155 Sum_probs=20.0
Q ss_pred eeeeccCCCchhHHHHHHhcCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~ 46 (115)
+++.||.|+|||.++..+|+.+
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 5589999999999999999886
No 212
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.83 E-value=0.0056 Score=51.67 Aligned_cols=25 Identities=12% Similarity=-0.084 Sum_probs=22.0
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCc
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDL 48 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~ 48 (115)
.+|+.||+|+|||.||..||+.++.
T Consensus 43 ~VLL~GpPGtGKT~LAraLa~~l~~ 67 (500)
T 3nbx_X 43 SVFLLGPPGIAKSLIARRLKFAFQN 67 (500)
T ss_dssp EEEEECCSSSSHHHHHHHGGGGBSS
T ss_pred eeEeecCchHHHHHHHHHHHHHHhh
Confidence 5778999999999999999997743
No 213
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.82 E-value=0.0038 Score=43.60 Aligned_cols=18 Identities=0% Similarity=-0.246 Sum_probs=15.2
Q ss_pred eeeccCCCchhHHHHHHh
Q psy7554 26 LSCLPDSVCPHAHQVDLT 43 (115)
Q Consensus 26 li~GpTasGKS~lai~LA 43 (115)
+|+||+|||||.|.-.|+
T Consensus 30 ~i~G~NGsGKStll~ai~ 47 (182)
T 3kta_A 30 AIVGANGSGKSNIGDAIL 47 (182)
T ss_dssp EEEECTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 589999999999966654
No 214
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.82 E-value=0.0064 Score=54.46 Aligned_cols=32 Identities=9% Similarity=-0.061 Sum_probs=27.1
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
.+|+.||.|+|||.||..+|.+++... +..|.
T Consensus 240 GILL~GPPGTGKT~LAraiA~elg~~~-~~v~~ 271 (806)
T 3cf2_A 240 GILLYGPPGTGKTLIARAVANETGAFF-FLING 271 (806)
T ss_dssp EEEEECCTTSCHHHHHHHHHTTTTCEE-EEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCeE-EEEEh
Confidence 466799999999999999999999877 55543
No 215
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.81 E-value=0.0067 Score=47.64 Aligned_cols=37 Identities=5% Similarity=-0.215 Sum_probs=26.5
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceEe-eccce
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFCR-TYQVY 56 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI~-IsaDS 56 (115)
.+.+|+. |+||+|||||++...||..+ +|.|. .+.|-
T Consensus 98 ~~g~vi~---lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~ 138 (302)
T 3b9q_A 98 RKPAVIM---IVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT 138 (302)
T ss_dssp SSCEEEE---EECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred CCCcEEE---EEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence 4566766 89999999999999998543 45542 44553
No 216
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.80 E-value=0.0059 Score=40.26 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=19.3
Q ss_pred eeeeeccCCCchhHHHHHHhcC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~ 45 (115)
.++++|++++|||+|...|...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4678999999999999999754
No 217
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.79 E-value=0.0045 Score=52.08 Aligned_cols=32 Identities=9% Similarity=-0.122 Sum_probs=24.7
Q ss_pred eeeeccCCCchhHHHHHHhcCCCce-Eeeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLF-CRTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~e-I~IsaDS 56 (115)
+++.||+|+|||.|+..+|..++.. +.|+++.
T Consensus 111 vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 111 LCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 4589999999999999999877543 2256554
No 218
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.79 E-value=0.0045 Score=46.39 Aligned_cols=31 Identities=6% Similarity=-0.291 Sum_probs=24.9
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeeccc
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQV 55 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaD 55 (115)
.++|.||.|+|||+|+.++++..+... ++++
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~~~~~~-~~~~ 63 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNERPGIL-IDCR 63 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSSEEE-EEHH
T ss_pred eEEEECCCcCCHHHHHHHHHHHcCcEE-EEee
Confidence 466899999999999999998876333 6654
No 219
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.79 E-value=0.005 Score=52.00 Aligned_cols=31 Identities=10% Similarity=-0.055 Sum_probs=24.8
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeeccc
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQV 55 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaD 55 (115)
.++|.||+|+|||.|+..+|...+... +..+
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~~~~~-i~i~ 96 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEARVPF-ITAS 96 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTTCCE-EEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCE-EEEe
Confidence 366899999999999999998877555 4443
No 220
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.78 E-value=0.0044 Score=47.93 Aligned_cols=23 Identities=17% Similarity=0.014 Sum_probs=20.2
Q ss_pred eeeeccCCCchhHHHHHHhcCCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD 47 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~ 47 (115)
+++.||.|+|||.++..+|+.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 45899999999999999998753
No 221
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.78 E-value=0.0029 Score=47.35 Aligned_cols=23 Identities=4% Similarity=-0.201 Sum_probs=20.9
Q ss_pred eeeeccCCCchhHHHHHHhcCCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD 47 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~ 47 (115)
++|.||.|||||+++..|++.++
T Consensus 29 i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 29 ITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999998876
No 222
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.76 E-value=0.0062 Score=50.26 Aligned_cols=38 Identities=11% Similarity=-0.042 Sum_probs=27.4
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceEeecccee
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFCRTYQVYL 57 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI~IsaDSm 57 (115)
.+..+++ |+||||||||+|...|+..+ .|.|++.-|..
T Consensus 165 ~~ggii~---I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~i 205 (418)
T 1p9r_A 165 RPHGIIL---VTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI 205 (418)
T ss_dssp SSSEEEE---EECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC
T ss_pred hcCCeEE---EECCCCCCHHHHHHHHHhhcCCCCCEEEEecccc
Confidence 5667666 99999999999977776533 46664555654
No 223
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.76 E-value=0.0045 Score=52.23 Aligned_cols=22 Identities=0% Similarity=-0.307 Sum_probs=19.0
Q ss_pred eeeeccCCCchhHHHHHHhcCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~ 46 (115)
++|+||||||||++...|+.-+
T Consensus 263 i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 263 AIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp EEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 4589999999999998888655
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.75 E-value=0.0065 Score=50.96 Aligned_cols=32 Identities=9% Similarity=-0.086 Sum_probs=25.2
Q ss_pred eeeeccCCCchhHHHHHHhc-----CCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTD-----GPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~-----~~~~eI~IsaDSm 57 (115)
++++||+|||||+++..||. +....+ +.+|..
T Consensus 103 IlivG~~G~GKTTt~~kLA~~l~~~G~kVll-v~~D~~ 139 (443)
T 3dm5_A 103 LLMVGIQGSGKTTTVAKLARYFQKRGYKVGV-VCSDTW 139 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTCCEEE-EECCCS
T ss_pred EEEECcCCCCHHHHHHHHHHHHHHCCCeEEE-EeCCCc
Confidence 45899999999999999985 344556 888854
No 225
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.75 E-value=0.0068 Score=40.41 Aligned_cols=23 Identities=9% Similarity=0.042 Sum_probs=19.9
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+-++++|+++||||+|...|...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35788999999999999999854
No 226
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.71 E-value=0.005 Score=48.80 Aligned_cols=26 Identities=4% Similarity=-0.055 Sum_probs=21.0
Q ss_pred eeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
+.|+||||||||+|...|+.-. .|.|
T Consensus 174 v~i~G~~GsGKTTll~~l~g~~~~~~g~i 202 (330)
T 2pt7_A 174 VIVCGGTGSGKTTYIKSIMEFIPKEERII 202 (330)
T ss_dssp EEEEESTTSCHHHHHHHGGGGSCTTSCEE
T ss_pred EEEECCCCCCHHHHHHHHhCCCcCCCcEE
Confidence 3489999999999999998765 3555
No 227
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.71 E-value=0.0079 Score=40.03 Aligned_cols=23 Identities=9% Similarity=0.088 Sum_probs=19.8
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+-++++|++++|||+|...|..+
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999853
No 228
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.71 E-value=0.0036 Score=47.37 Aligned_cols=32 Identities=3% Similarity=-0.246 Sum_probs=27.7
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeeccce
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVY 56 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDS 56 (115)
.|.|.|+.|||||.+|..||++++..+ +..|-
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~-~d~~~ 47 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHF-YDDDI 47 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEE-ECHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcE-EcHHH
Confidence 367899999999999999999999988 66553
No 229
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.69 E-value=0.0072 Score=40.24 Aligned_cols=23 Identities=4% Similarity=-0.006 Sum_probs=19.5
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+.++++|+++||||+|...|...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35788999999999999888744
No 230
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.68 E-value=0.0072 Score=40.35 Aligned_cols=24 Identities=8% Similarity=-0.081 Sum_probs=20.6
Q ss_pred eeeeeeccCCCchhHHHHHHhcCC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~ 46 (115)
+.++++|++++|||+|...|....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 458899999999999999998653
No 231
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.68 E-value=0.0074 Score=39.94 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=19.6
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+.++++|++++|||+|...+..+
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35788999999999999998754
No 232
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.62 E-value=0.0076 Score=40.25 Aligned_cols=23 Identities=13% Similarity=0.065 Sum_probs=19.7
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+.++++|++++|||+|...|...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35788999999999999999754
No 233
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.62 E-value=0.01 Score=39.78 Aligned_cols=23 Identities=4% Similarity=-0.044 Sum_probs=19.9
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+.++++|++++|||+|...|...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35789999999999999999854
No 234
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.62 E-value=0.0087 Score=47.19 Aligned_cols=37 Identities=5% Similarity=-0.283 Sum_probs=26.6
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC-------CceEeecccee
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP-------DLFCRTYQVYL 57 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~-------~~eI~IsaDSm 57 (115)
.+.+++. |+||+|||||+|+..|+.-+ ...+ |+.|..
T Consensus 88 ~~g~ivg---I~G~sGsGKSTL~~~L~gll~~~~G~~~v~~-v~qd~~ 131 (312)
T 3aez_A 88 PVPFIIG---VAGSVAVGKSTTARVLQALLARWDHHPRVDL-VTTDGF 131 (312)
T ss_dssp CCCEEEE---EECCTTSCHHHHHHHHHHHHHTSTTCCCEEE-EEGGGG
T ss_pred CCCEEEE---EECCCCchHHHHHHHHHhhccccCCCCeEEE-EecCcc
Confidence 4555655 89999999999999888633 1234 677754
No 235
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.61 E-value=0.0094 Score=39.72 Aligned_cols=22 Identities=9% Similarity=0.018 Sum_probs=19.5
Q ss_pred eeeeeccCCCchhHHHHHHhcC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~ 45 (115)
.++++|++++|||+|...|...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4788999999999999999864
No 236
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.61 E-value=0.0077 Score=41.69 Aligned_cols=26 Identities=8% Similarity=-0.118 Sum_probs=21.3
Q ss_pred eeEeeeeeeccCCCchhHHHHHHhcC
Q psy7554 20 QVYLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 20 ~~~~~~li~GpTasGKS~lai~LA~~ 45 (115)
+--+-++++|+.+||||+|...|...
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcC
Confidence 33456789999999999999999864
No 237
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.59 E-value=0.011 Score=43.31 Aligned_cols=31 Identities=0% Similarity=-0.239 Sum_probs=24.8
Q ss_pred eeeeccCCCchhHHHHHHhc----CCCceEeeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTD----GPDLFCRTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~----~~~~eI~IsaDS 56 (115)
+++.|..|||||+++..||. +...-+ |.+|.
T Consensus 17 ~~~~GkgGvGKTTl~~~La~~l~~g~~v~v-vd~D~ 51 (262)
T 1yrb_A 17 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAY-VNLDT 51 (262)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTTTSCEEE-EECCS
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHCCCeEEE-EeCCC
Confidence 45899999999999999983 445566 88775
No 238
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.57 E-value=0.012 Score=39.76 Aligned_cols=26 Identities=4% Similarity=-0.106 Sum_probs=21.4
Q ss_pred eeEeeeeeeccCCCchhHHHHHHhcC
Q psy7554 20 QVYLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 20 ~~~~~~li~GpTasGKS~lai~LA~~ 45 (115)
.--+.++++|++++|||+|...|...
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcC
Confidence 33456889999999999999999754
No 239
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.57 E-value=0.0086 Score=39.65 Aligned_cols=22 Identities=9% Similarity=-0.006 Sum_probs=19.3
Q ss_pred eeeeeccCCCchhHHHHHHhcC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~ 45 (115)
.++++|++++|||+|...|...
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5788999999999999999854
No 240
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.57 E-value=0.0084 Score=40.48 Aligned_cols=23 Identities=9% Similarity=-0.041 Sum_probs=19.9
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+.++++|+++||||+|...|...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45889999999999999998754
No 241
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.56 E-value=0.0049 Score=46.19 Aligned_cols=32 Identities=3% Similarity=-0.347 Sum_probs=24.0
Q ss_pred eeeeeccCCCchhHHHHHHhcCCC--ceEeeccce
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPD--LFCRTYQVY 56 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~--~eI~IsaDS 56 (115)
.++|.||.|+|||+|+.++++..+ ... +++..
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~~~~~~-~~~~~ 65 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELNLPYIY-LDLRK 65 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCCEEE-EEGGG
T ss_pred cEEEECCCCCCHHHHHHHHHHhcCCCEEE-EEchh
Confidence 466899999999999999987653 233 55543
No 242
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.55 E-value=0.0055 Score=52.55 Aligned_cols=23 Identities=17% Similarity=-0.139 Sum_probs=20.3
Q ss_pred eeeeeccCCCchhHHHHHHhcCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~ 46 (115)
.++++||+|+|||.++..||+.+
T Consensus 209 ~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 209 NPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEcCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999875
No 243
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.55 E-value=0.0069 Score=41.91 Aligned_cols=24 Identities=17% Similarity=0.036 Sum_probs=20.5
Q ss_pred eeeeeeccCCCchhHHHHHHhcCC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~ 46 (115)
..++++|++|||||+|...|....
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 357789999999999999998654
No 244
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.53 E-value=0.0075 Score=45.41 Aligned_cols=33 Identities=3% Similarity=-0.285 Sum_probs=25.2
Q ss_pred cCCCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 15 TGTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 15 ~~~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
+=.+.+++. |+||+|||||+|..-|+.-. .|+|
T Consensus 27 ~i~~Ge~~~---iiG~nGsGKSTLl~~l~Gl~~p~~G~I 62 (235)
T 3tif_A 27 NIKEGEFVS---IMGPSGSGKSTMLNIIGCLDKPTEGEV 62 (235)
T ss_dssp EECTTCEEE---EECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred EEcCCCEEE---EECCCCCcHHHHHHHHhcCCCCCceEE
Confidence 345677776 89999999999988887543 3566
No 245
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.53 E-value=0.0036 Score=54.64 Aligned_cols=39 Identities=10% Similarity=-0.039 Sum_probs=29.2
Q ss_pred eeeeccCCCchhHHHHHHhcCC---CceEeeccceeeeccCCc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP---DLFCRTYQVYLMVYKGLD 64 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~---~~eI~IsaDSmQVYkgld 64 (115)
|+++|+.|||||++|..||+.+ +... +..|.-.+-.++.
T Consensus 55 IvLtGlsGSGKSTlAr~La~~L~~~G~~~-v~lDgD~iR~~L~ 96 (630)
T 1x6v_B 55 VWLTGLSGAGKTTVSMALEEYLVCHGIPC-YTLDGDNIRQGLN 96 (630)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCE-EEESHHHHTTTTT
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeE-EEechHHhhhccC
Confidence 5679999999999999999987 6555 5555444444554
No 246
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.52 E-value=0.007 Score=42.90 Aligned_cols=24 Identities=17% Similarity=0.036 Sum_probs=20.6
Q ss_pred eeeeeeccCCCchhHHHHHHhcCC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~ 46 (115)
..++++|++|||||+|...|+...
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 347789999999999999998754
No 247
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.51 E-value=0.0085 Score=47.71 Aligned_cols=26 Identities=4% Similarity=-0.296 Sum_probs=21.0
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHhcCC
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA~~~ 46 (115)
+.+++. |+||.|||||.|+..+|...
T Consensus 130 ~G~i~~---I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITE---VFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEE---EEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEE---EECCCCCCHHHHHHHHHHHh
Confidence 445665 99999999999999988543
No 248
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.50 E-value=0.013 Score=39.67 Aligned_cols=23 Identities=4% Similarity=-0.090 Sum_probs=20.0
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+.++++|+.+||||+|...|...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 45789999999999999998854
No 249
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.49 E-value=0.0081 Score=44.18 Aligned_cols=14 Identities=0% Similarity=-0.166 Sum_probs=11.8
Q ss_pred eeeeccCCCchhHH
Q psy7554 25 YLSCLPDSVCPHAH 38 (115)
Q Consensus 25 ~li~GpTasGKS~l 38 (115)
++++||||||||.+
T Consensus 79 ~~i~g~TGsGKTt~ 92 (235)
T 3llm_A 79 VIIRGATGCGKTTQ 92 (235)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEEeCCCCCcHHh
Confidence 45899999999964
No 250
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.47 E-value=0.0081 Score=43.56 Aligned_cols=20 Identities=5% Similarity=-0.067 Sum_probs=17.8
Q ss_pred eeeccCCCchhHHHHHHhcC
Q psy7554 26 LSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 26 li~GpTasGKS~lai~LA~~ 45 (115)
+|+||.|||||.++++++.+
T Consensus 7 vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 7 VITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp EEEESTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 48999999999999998854
No 251
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.47 E-value=0.0094 Score=49.68 Aligned_cols=30 Identities=3% Similarity=-0.309 Sum_probs=22.9
Q ss_pred eeeccCCCchhHHHHHHhcC-----CCceEeeccce
Q psy7554 26 LSCLPDSVCPHAHQVDLTDG-----PDLFCRTYQVY 56 (115)
Q Consensus 26 li~GpTasGKS~lai~LA~~-----~~~eI~IsaDS 56 (115)
+++||+|||||+++..||.. ....+ +.+|-
T Consensus 101 ~lvG~~GsGKTTt~~kLA~~l~~~G~kVll-v~~D~ 135 (433)
T 3kl4_A 101 MLVGVQGSGKTTTAGKLAYFYKKRGYKVGL-VAADV 135 (433)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHHTTCCEEE-EEECC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCeEEE-EecCc
Confidence 37999999999999999843 33445 78773
No 252
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.45 E-value=0.0085 Score=46.70 Aligned_cols=24 Identities=4% Similarity=-0.309 Sum_probs=19.9
Q ss_pred ceeEeeeeeeccCCCchhHHHHHHhcC
Q psy7554 19 DQVYLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 19 ~~~~~~~li~GpTasGKS~lai~LA~~ 45 (115)
.++++ |+||+|||||.|+..+|..
T Consensus 107 G~i~~---i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 107 RTMTE---FFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp TSEEE---EEESTTSSHHHHHHHHHHH
T ss_pred CcEEE---EECCCCCCHhHHHHHHHHH
Confidence 45554 9999999999999999853
No 253
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.45 E-value=0.0092 Score=44.98 Aligned_cols=31 Identities=3% Similarity=-0.192 Sum_probs=24.5
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+.+++. |+||+|||||+|..-|+.-+ .|+|
T Consensus 29 ~~Ge~~~---i~G~nGsGKSTLl~~l~Gl~~p~~G~I 62 (237)
T 2cbz_A 29 PEGALVA---VVGQVGCGKSSLLSALLAEMDKVEGHV 62 (237)
T ss_dssp CTTCEEE---EECSTTSSHHHHHHHHTTCSEEEEEEE
T ss_pred CCCCEEE---EECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 4666666 89999999999999888665 3555
No 254
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.45 E-value=0.012 Score=39.62 Aligned_cols=24 Identities=4% Similarity=-0.172 Sum_probs=20.1
Q ss_pred eeeeeeccCCCchhHHHHHHhcCC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~ 46 (115)
+.++++|++++|||+|...|....
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEECCCCccHHHHHHHHhcCC
Confidence 357889999999999999998654
No 255
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.44 E-value=0.0092 Score=45.99 Aligned_cols=24 Identities=4% Similarity=-0.361 Sum_probs=20.1
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHhc
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA~ 44 (115)
+.++++ |+||+|||||.|+..+|.
T Consensus 97 ~g~i~~---i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 97 SQSVTE---FAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp TTEEEE---EEESTTSSHHHHHHHHHH
T ss_pred CCeEEE---EECCCCCCHHHHHHHHHH
Confidence 345555 999999999999999985
No 256
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.44 E-value=0.0076 Score=49.85 Aligned_cols=31 Identities=6% Similarity=-0.248 Sum_probs=25.3
Q ss_pred eeeeccCCCchhHHHHHHhcCC-----CceEeeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP-----DLFCRTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~-----~~eI~IsaDS 56 (115)
++|+|++|||||+++..||..+ ...+ +.+|.
T Consensus 102 I~ivG~~GvGKTTla~~La~~l~~~G~kVll-v~~D~ 137 (432)
T 2v3c_C 102 ILLVGIQGSGKTTTAAKLARYIQKRGLKPAL-IAADT 137 (432)
T ss_dssp EEEECCSSSSTTHHHHHHHHHHHHHHCCEEE-ECCSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEE-Eeccc
Confidence 5589999999999999999754 3556 88884
No 257
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.43 E-value=0.0099 Score=39.89 Aligned_cols=22 Identities=5% Similarity=-0.177 Sum_probs=19.3
Q ss_pred eeeeeccCCCchhHHHHHHhcC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~ 45 (115)
-++++|+++||||+|...|...
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4788999999999999999754
No 258
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.43 E-value=0.0089 Score=41.28 Aligned_cols=25 Identities=8% Similarity=-0.097 Sum_probs=20.8
Q ss_pred EeeeeeeccCCCchhHHHHHHhcCC
Q psy7554 22 YLSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 22 ~~~~li~GpTasGKS~lai~LA~~~ 46 (115)
-..++++|+++||||+|...|..+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3457889999999999999998653
No 259
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.42 E-value=0.011 Score=46.64 Aligned_cols=36 Identities=8% Similarity=-0.134 Sum_probs=25.7
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---Cc--eEeeccce
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DL--FCRTYQVY 56 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~--eI~IsaDS 56 (115)
.+.+|+. |+||+|||||+++..||..+ ++ .+ +.+|-
T Consensus 102 ~~~~vi~---ivG~~GsGKTTl~~~LA~~l~~~g~kV~l-v~~D~ 142 (306)
T 1vma_A 102 EPPFVIM---VVGVNGTGKTTSCGKLAKMFVDEGKSVVL-AAADT 142 (306)
T ss_dssp SSCEEEE---EECCTTSSHHHHHHHHHHHHHHTTCCEEE-EEECT
T ss_pred CCCeEEE---EEcCCCChHHHHHHHHHHHHHhcCCEEEE-Ecccc
Confidence 3445554 89999999999999998543 33 34 67774
No 260
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.41 E-value=0.015 Score=44.46 Aligned_cols=33 Identities=3% Similarity=-0.072 Sum_probs=24.9
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCCC--ceEee
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGPD--LFCRT 52 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~~--~eI~I 52 (115)
.+.+++. |+||.|||||+|..-|+.-+. |+|.+
T Consensus 24 ~~Ge~~~---liG~NGsGKSTLlk~l~Gl~~p~G~i~~ 58 (249)
T 2qi9_C 24 RAGEILH---LVGPNGAGKSTLLARMAGMTSGKGSIQF 58 (249)
T ss_dssp ETTCEEE---EECCTTSSHHHHHHHHTTSSCCEEEEEE
T ss_pred cCCCEEE---EECCCCCcHHHHHHHHhCCCCCCeEEEE
Confidence 3556665 899999999999998886543 67633
No 261
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.40 E-value=0.0063 Score=47.44 Aligned_cols=31 Identities=13% Similarity=-0.072 Sum_probs=24.9
Q ss_pred cCCCceeEeeeeeeccCCCchhHHHHHHhcCCCc
Q psy7554 15 TGTPDQVYLSYLSCLPDSVCPHAHQVDLTDGPDL 48 (115)
Q Consensus 15 ~~~~~~~~~~~li~GpTasGKS~lai~LA~~~~~ 48 (115)
.|+....|| +.||.|+|||.+|..+|+.+++
T Consensus 20 ~~~~~~a~L---~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 20 AGRGHHALL---IQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp TTCCCSEEE---EECCTTSCHHHHHHHHHHHHTC
T ss_pred cCCcceeEE---EECCCCchHHHHHHHHHHHHhC
Confidence 455555555 8999999999999999988754
No 262
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.39 E-value=0.0089 Score=44.62 Aligned_cols=31 Identities=3% Similarity=-0.326 Sum_probs=23.7
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+.+++. |+||.|||||+|..-|+--. .|+|
T Consensus 28 ~~Ge~~~---iiG~nGsGKSTLl~~l~Gl~~p~~G~i 61 (224)
T 2pcj_A 28 KKGEFVS---IIGASGSGKSTLLYILGLLDAPTEGKV 61 (224)
T ss_dssp ETTCEEE---EEECTTSCHHHHHHHHTTSSCCSEEEE
T ss_pred cCCCEEE---EECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 3566666 89999999999988888543 3666
No 263
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.38 E-value=0.011 Score=47.86 Aligned_cols=37 Identities=5% Similarity=-0.215 Sum_probs=26.6
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceEe-eccce
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFCR-TYQVY 56 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI~-IsaDS 56 (115)
.+.+|+. |+||+|||||++...||..+ +|.|. .++|-
T Consensus 155 ~~g~vi~---lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~ 195 (359)
T 2og2_A 155 RKPAVIM---IVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT 195 (359)
T ss_dssp SSSEEEE---EECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred CCCeEEE---EEcCCCChHHHHHHHHHhhccccCCEEEEecccc
Confidence 4566766 89999999999999998543 45442 44553
No 264
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.38 E-value=0.011 Score=46.50 Aligned_cols=24 Identities=17% Similarity=0.069 Sum_probs=19.8
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHhc
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA~ 44 (115)
+.+++. |+||+|||||++...||.
T Consensus 101 ~g~vi~---lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVL---VVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEE---EECSTTSSHHHHHHHHHH
T ss_pred CCeEEE---EECCCCCcHHHHHHHHHH
Confidence 345655 799999999999999984
No 265
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.38 E-value=0.01 Score=40.58 Aligned_cols=22 Identities=14% Similarity=-0.153 Sum_probs=19.4
Q ss_pred eeeeeccCCCchhHHHHHHhcC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~ 45 (115)
-++|+|++|+|||+|...|+..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999864
No 266
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.36 E-value=0.0095 Score=40.77 Aligned_cols=23 Identities=9% Similarity=-0.152 Sum_probs=20.0
Q ss_pred eeeeeccCCCchhHHHHHHhcCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~ 46 (115)
-++++|++++|||+|...|....
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 46789999999999999998664
No 267
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.36 E-value=0.011 Score=44.56 Aligned_cols=34 Identities=9% Similarity=-0.164 Sum_probs=26.0
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhcCC---CceEee
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFCRT 52 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI~I 52 (115)
=.+.+++. |+||+|||||+|..-|+.-. .|+|.+
T Consensus 25 i~~Ge~~~---i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 61 (243)
T 1mv5_A 25 AQPNSIIA---FAGPSGGGKSTIFSLLERFYQPTAGEITI 61 (243)
T ss_dssp ECTTEEEE---EECCTTSSHHHHHHHHTTSSCCSBSCEEE
T ss_pred EcCCCEEE---EECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 35667766 89999999999999888544 366634
No 268
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.36 E-value=0.0052 Score=53.98 Aligned_cols=23 Identities=13% Similarity=-0.135 Sum_probs=20.1
Q ss_pred eeeeeccCCCchhHHHHHHhcCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~ 46 (115)
+++++||+|+|||+++..+|+.+
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHHH
Confidence 35679999999999999999876
No 269
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.34 E-value=0.0094 Score=41.85 Aligned_cols=16 Identities=6% Similarity=-0.211 Sum_probs=13.3
Q ss_pred eeeccCCCchhHHHHH
Q psy7554 26 LSCLPDSVCPHAHQVD 41 (115)
Q Consensus 26 li~GpTasGKS~lai~ 41 (115)
+|+||+|||||.+.-.
T Consensus 27 ~I~G~NGsGKStil~A 42 (149)
T 1f2t_A 27 LIIGQNGSGKSSLLDA 42 (149)
T ss_dssp EEECCTTSSHHHHHHH
T ss_pred EEECCCCCCHHHHHHH
Confidence 5899999999998433
No 270
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.34 E-value=0.011 Score=46.64 Aligned_cols=25 Identities=4% Similarity=-0.277 Sum_probs=20.7
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHhcC
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA~~ 45 (115)
+.++++ |+||+|||||.|+..+|..
T Consensus 121 ~G~i~~---I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 121 SMAITE---AFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSEEEE---EECCTTCTHHHHHHHHHHH
T ss_pred CCeEEE---EECCCCCCHHHHHHHHHHH
Confidence 455555 9999999999999999863
No 271
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.32 E-value=0.012 Score=39.16 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=19.2
Q ss_pred eeeeeccCCCchhHHHHHHhcC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~ 45 (115)
.++++|+++||||+|...|..+
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4788999999999999998754
No 272
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.31 E-value=0.0097 Score=40.12 Aligned_cols=23 Identities=13% Similarity=0.095 Sum_probs=20.1
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+-++++|++++|||+|...|...
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999999754
No 273
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.29 E-value=0.0099 Score=46.23 Aligned_cols=31 Identities=6% Similarity=-0.216 Sum_probs=24.1
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+.+++. |+||+|||||+|..-|+--+ .|+|
T Consensus 32 ~~Ge~~~---iiGpnGsGKSTLl~~l~Gl~~p~~G~I 65 (275)
T 3gfo_A 32 KRGEVTA---ILGGNGVGKSTLFQNFNGILKPSSGRI 65 (275)
T ss_dssp ETTSEEE---EECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred cCCCEEE---EECCCCCCHHHHHHHHHcCCCCCCeEE
Confidence 4566666 89999999999999888543 3666
No 274
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.29 E-value=0.011 Score=40.47 Aligned_cols=22 Identities=14% Similarity=-0.014 Sum_probs=19.6
Q ss_pred eeeeeccCCCchhHHHHHHhcC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~ 45 (115)
.++++|++++|||+|...|...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4778999999999999999865
No 275
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.28 E-value=0.0099 Score=41.88 Aligned_cols=38 Identities=13% Similarity=-0.015 Sum_probs=25.1
Q ss_pred ceeeeeccCCCceeEeeeeeeccCCCchhHHHHHHhcC
Q psy7554 8 HYQVNLLTGTPDQVYLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~li~GpTasGKS~lai~LA~~ 45 (115)
||...++....+.--+-++++|+++||||+|...+..+
T Consensus 15 ~~~~~~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 15 VPRGSLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp --CCCGGGGTTTTSCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred chHHHHHHHhccCCccEEEEECCCCCCHHHHHHHHHhC
Confidence 34444444333333355889999999999999999754
No 276
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.28 E-value=0.014 Score=41.70 Aligned_cols=31 Identities=3% Similarity=-0.225 Sum_probs=24.7
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC--CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP--DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~--~~eI 50 (115)
.+.+++. |.||.|+|||+|..-|+..+ .|+|
T Consensus 31 ~~Ge~v~---L~G~nGaGKTTLlr~l~g~l~~~G~V 63 (158)
T 1htw_A 31 EKAIMVY---LNGDLGAGKTTLTRGMLQGIGHQGNV 63 (158)
T ss_dssp SSCEEEE---EECSTTSSHHHHHHHHHHHTTCCSCC
T ss_pred CCCCEEE---EECCCCCCHHHHHHHHHHhCCCCCeE
Confidence 6777766 89999999999998888755 3455
No 277
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.27 E-value=0.0099 Score=41.38 Aligned_cols=22 Identities=5% Similarity=-0.124 Sum_probs=19.6
Q ss_pred eeeeeccCCCchhHHHHHHhcC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~ 45 (115)
-++|+|+.|+|||+|...++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999999874
No 278
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.27 E-value=0.018 Score=39.42 Aligned_cols=22 Identities=14% Similarity=-0.153 Sum_probs=19.6
Q ss_pred eeeeeccCCCchhHHHHHHhcC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~ 45 (115)
-++++|++|+|||+|...|+..
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999864
No 279
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.27 E-value=0.012 Score=40.61 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=20.2
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+.++++|+++||||+|...|+.+
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45789999999999999999854
No 280
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.26 E-value=0.022 Score=45.10 Aligned_cols=37 Identities=0% Similarity=-0.085 Sum_probs=26.5
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhcCC---Cc--eEeeccce
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DL--FCRTYQVY 56 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~--eI~IsaDS 56 (115)
..+.+|+. |+||+|+|||+++..||..+ ++ .+ +.+|-
T Consensus 102 ~~~~~vI~---ivG~~G~GKTT~~~~LA~~l~~~g~kVll-id~D~ 143 (320)
T 1zu4_A 102 ENRLNIFM---LVGVNGTGKTTSLAKMANYYAELGYKVLI-AAADT 143 (320)
T ss_dssp TTSCEEEE---EESSTTSSHHHHHHHHHHHHHHTTCCEEE-EECCC
T ss_pred CCCCeEEE---EECCCCCCHHHHHHHHHHHHHHCCCeEEE-EeCCC
Confidence 34556655 89999999999998888533 33 34 77775
No 281
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.26 E-value=0.012 Score=39.98 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.0
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+.++|+|++++|||+|...|...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999999853
No 282
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.24 E-value=0.012 Score=39.99 Aligned_cols=23 Identities=17% Similarity=0.172 Sum_probs=19.8
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+.++++|+++||||+|...|...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999999854
No 283
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.23 E-value=0.012 Score=39.81 Aligned_cols=22 Identities=0% Similarity=-0.324 Sum_probs=18.9
Q ss_pred eeeeeccCCCchhHHHHHHhcC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~ 45 (115)
-++++|++++|||+|...|...
T Consensus 10 ~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 10 VVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp EEEEESCTTTTHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3678999999999999999753
No 284
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.23 E-value=0.0099 Score=45.22 Aligned_cols=26 Identities=8% Similarity=-0.162 Sum_probs=20.7
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHhcCC
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA~~~ 46 (115)
+..+++ ++||+|+|||.+++.++.+.
T Consensus 11 ~G~i~l---itG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 11 IGWIEF---ITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp CCEEEE---EECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEE---EECCCCCcHHHHHHHHHHHH
Confidence 445554 99999999999999888654
No 285
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.23 E-value=0.0057 Score=44.95 Aligned_cols=21 Identities=0% Similarity=-0.216 Sum_probs=18.5
Q ss_pred eeeeccCCCchhHHHHHHhcC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~ 45 (115)
+.|+|+.|||||+|+..|++.
T Consensus 7 i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 7 WQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999998865
No 286
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.21 E-value=0.012 Score=46.48 Aligned_cols=32 Identities=3% Similarity=-0.361 Sum_probs=23.1
Q ss_pred eeeeccCCCchhHHHHHHhc---CCCceEeecccee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTD---GPDLFCRTYQVYL 57 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~---~~~~eI~IsaDSm 57 (115)
.+|+||||||||.+...++. ..++.| +..|.-
T Consensus 38 ~~i~G~~G~GKs~~~~~~~~~~~~~~~~~-~~~D~~ 72 (392)
T 4ag6_A 38 WTILAKPGAGKSFTAKMLLLREYMQGSRV-IIIDPE 72 (392)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTCCE-EEEESS
T ss_pred eEEEcCCCCCHHHHHHHHHHHHHHCCCEE-EEEeCC
Confidence 56899999999999776663 346666 556643
No 287
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.20 E-value=0.0094 Score=50.41 Aligned_cols=24 Identities=4% Similarity=-0.208 Sum_probs=21.3
Q ss_pred eeeeeccCCCchhHHHHHHhcCCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPD 47 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~ 47 (115)
.++|.||+|+|||.|+..||..++
T Consensus 62 ~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 62 HVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CEEEECCTTSSHHHHHHHHHHTSC
T ss_pred EEEEEeCCCCCHHHHHHHHhccCC
Confidence 456899999999999999998774
No 288
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.20 E-value=0.013 Score=39.38 Aligned_cols=24 Identities=13% Similarity=0.059 Sum_probs=20.5
Q ss_pred eeeeeeccCCCchhHHHHHHhcCC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~ 46 (115)
+.++++|+++||||+|...|....
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 458899999999999999998543
No 289
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.20 E-value=0.011 Score=42.09 Aligned_cols=31 Identities=0% Similarity=-0.375 Sum_probs=22.9
Q ss_pred eeeeccCCCchhHHHHHHhcCC----CceEeeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP----DLFCRTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~----~~eI~IsaDS 56 (115)
++|+|+.|||||+|..+|+..+ ...+ |..|.
T Consensus 33 i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~-i~~d~ 67 (221)
T 2wsm_A 33 VNIMGAIGSGKTLLIERTIERIGNEVKIGA-MLGDV 67 (221)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTTTSCEEE-EECSC
T ss_pred EEEEcCCCCCHHHHHHHHHHHhccCCeEEE-EecCC
Confidence 5689999999999999988653 2344 55553
No 290
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.19 E-value=0.006 Score=42.85 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=17.0
Q ss_pred eeeeccCCCchhHHHHHHhc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~ 44 (115)
+++.+|||+|||.+++.++.
T Consensus 51 ~li~~~tGsGKT~~~~~~~~ 70 (216)
T 3b6e_A 51 IIICLPTGSGKTRVAVYIAK 70 (216)
T ss_dssp EEEECSCHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 56899999999988877765
No 291
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.18 E-value=0.012 Score=45.41 Aligned_cols=31 Identities=13% Similarity=-0.026 Sum_probs=24.4
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+.+++. |+||+|||||+|..-|+--. .|+|
T Consensus 35 ~~Ge~~~---liG~nGsGKSTLl~~l~Gl~~p~~G~I 68 (266)
T 4g1u_C 35 ASGEMVA---IIGPNGAGKSTLLRLLTGYLSPSHGEC 68 (266)
T ss_dssp ETTCEEE---EECCTTSCHHHHHHHHTSSSCCSSCEE
T ss_pred cCCCEEE---EECCCCCcHHHHHHHHhcCCCCCCcEE
Confidence 4566666 89999999999999988543 4666
No 292
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.17 E-value=0.013 Score=39.79 Aligned_cols=22 Identities=18% Similarity=0.015 Sum_probs=19.6
Q ss_pred eeeeeccCCCchhHHHHHHhcC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~ 45 (115)
.++++|++++|||+|...|...
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4788999999999999999865
No 293
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.17 E-value=0.013 Score=39.61 Aligned_cols=23 Identities=9% Similarity=-0.033 Sum_probs=20.0
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+.++++|++++|||+|...|...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 45889999999999999999854
No 294
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.17 E-value=0.013 Score=39.44 Aligned_cols=22 Identities=9% Similarity=-0.090 Sum_probs=19.3
Q ss_pred eeeeeeccCCCchhHHHHHHhc
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~ 44 (115)
+-++++|+++||||+|...|..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4578899999999999999974
No 295
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.17 E-value=0.012 Score=44.69 Aligned_cols=33 Identities=3% Similarity=-0.303 Sum_probs=24.6
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceEee
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFCRT 52 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI~I 52 (115)
.+.+++. |+||+|||||+|..-|+.-+ .|+|.+
T Consensus 33 ~~Ge~~~---i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i 68 (247)
T 2ff7_A 33 KQGEVIG---IVGRSGSGKSTLTKLIQRFYIPENGQVLI 68 (247)
T ss_dssp ETTCEEE---EECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred cCCCEEE---EECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 3556665 89999999999988888654 366633
No 296
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.16 E-value=0.0097 Score=47.22 Aligned_cols=17 Identities=6% Similarity=-0.205 Sum_probs=14.4
Q ss_pred eeeccCCCchhHH--HHHH
Q psy7554 26 LSCLPDSVCPHAH--QVDL 42 (115)
Q Consensus 26 li~GpTasGKS~l--ai~L 42 (115)
+|+||||+|||.+ |+.+
T Consensus 29 vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 29 AIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEECTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4899999999998 5554
No 297
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.14 E-value=0.013 Score=47.82 Aligned_cols=25 Identities=12% Similarity=0.197 Sum_probs=20.7
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHhcC
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA~~ 45 (115)
|.++++ |+|++|+|||+|++.+|..
T Consensus 202 ~G~lii---I~G~pG~GKTtl~l~ia~~ 226 (454)
T 2r6a_A 202 RSDLII---VAARPSVGKTAFALNIAQN 226 (454)
T ss_dssp TTCEEE---EECCTTSCHHHHHHHHHHH
T ss_pred CCCEEE---EECCCCCCHHHHHHHHHHH
Confidence 556665 9999999999999998753
No 298
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.13 E-value=0.012 Score=47.78 Aligned_cols=24 Identities=8% Similarity=0.210 Sum_probs=20.1
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHhc
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA~ 44 (115)
|.++++ |+|++|+|||+|++.+|.
T Consensus 199 ~G~l~i---i~G~pg~GKT~lal~ia~ 222 (444)
T 2q6t_A 199 PGSLNI---IAARPAMGKTAFALTIAQ 222 (444)
T ss_dssp TTCEEE---EEECTTSCHHHHHHHHHH
T ss_pred CCcEEE---EEeCCCCCHHHHHHHHHH
Confidence 455655 999999999999998874
No 299
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.13 E-value=0.011 Score=39.48 Aligned_cols=23 Identities=13% Similarity=-0.181 Sum_probs=19.2
Q ss_pred eeeeeccCCCchhHHHHHHhcCC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~ 46 (115)
-++++|++++|||+|...+....
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 46789999999999999997543
No 300
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.13 E-value=0.012 Score=44.67 Aligned_cols=31 Identities=13% Similarity=-0.102 Sum_probs=24.2
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+.+++. |+||.|||||+|..-|+.-+ .|+|
T Consensus 31 ~~Ge~~~---liG~nGsGKSTLlk~l~Gl~~p~~G~i 64 (257)
T 1g6h_A 31 NKGDVTL---IIGPNGSGKSTLINVITGFLKADEGRV 64 (257)
T ss_dssp ETTCEEE---EECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred eCCCEEE---EECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 4566666 89999999999999888654 3666
No 301
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.11 E-value=0.013 Score=43.87 Aligned_cols=31 Identities=3% Similarity=-0.160 Sum_probs=23.9
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+.+++. |+||.|||||+|..-|+.-+ .|+|
T Consensus 32 ~~Ge~~~---i~G~nGsGKSTLl~~l~Gl~~p~~G~i 65 (229)
T 2pze_A 32 ERGQLLA---VAGSTGAGKTSLLMMIMGELEPSEGKI 65 (229)
T ss_dssp ETTCEEE---EECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred cCCCEEE---EECCCCCCHHHHHHHHhCCCcCCccEE
Confidence 3556665 89999999999998888654 3565
No 302
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.11 E-value=0.014 Score=44.27 Aligned_cols=26 Identities=12% Similarity=-0.018 Sum_probs=21.7
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcC
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~ 45 (115)
.+.+++. |+||.|||||+|..-|+.-
T Consensus 27 ~~Ge~~~---l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHA---LMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEE---EECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEE---EECCCCCCHHHHHHHHhCC
Confidence 4566666 8999999999999988864
No 303
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.08 E-value=0.014 Score=44.66 Aligned_cols=33 Identities=3% Similarity=-0.313 Sum_probs=24.8
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC--CceEee
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP--DLFCRT 52 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~--~~eI~I 52 (115)
.+.+++. |+||+|||||+|..-|+.-+ .|+|.+
T Consensus 44 ~~Ge~~~---i~G~nGsGKSTLl~~l~Gl~~~~G~I~i 78 (260)
T 2ghi_A 44 PSGTTCA---LVGHTGSGKSTIAKLLYRFYDAEGDIKI 78 (260)
T ss_dssp CTTCEEE---EECSTTSSHHHHHHHHTTSSCCEEEEEE
T ss_pred CCCCEEE---EECCCCCCHHHHHHHHhccCCCCeEEEE
Confidence 4566665 89999999999998888543 466633
No 304
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.08 E-value=0.017 Score=47.69 Aligned_cols=31 Identities=6% Similarity=-0.107 Sum_probs=24.9
Q ss_pred eeeeccCCCchhHHHHHHhc------CCCceEeeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTD------GPDLFCRTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~------~~~~eI~IsaDS 56 (115)
++++|++|||||+++..||. +...-+ |.+|.
T Consensus 103 I~ivG~~GvGKTT~a~~LA~~l~~~~G~kVll-vd~D~ 139 (433)
T 2xxa_A 103 VLMAGLQGAGKTTSVGKLGKFLREKHKKKVLV-VSADV 139 (433)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTSCCCEEE-EECCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCeEEE-EecCC
Confidence 34689999999999999982 555667 88985
No 305
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.08 E-value=0.017 Score=46.09 Aligned_cols=27 Identities=7% Similarity=-0.091 Sum_probs=22.0
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhcC
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~~ 45 (115)
..+.+|+. |+||+|||||++...||..
T Consensus 126 ~~~g~vi~---lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 126 AEKPYVIM---FVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SCSSEEEE---EECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEE---EECCCCCCHHHHHHHHHHH
Confidence 34566766 8999999999999998853
No 306
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.06 E-value=0.014 Score=39.82 Aligned_cols=23 Identities=4% Similarity=0.003 Sum_probs=19.9
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+-++++|+++||||+|...|...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999998744
No 307
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.06 E-value=0.017 Score=38.91 Aligned_cols=23 Identities=9% Similarity=0.021 Sum_probs=20.2
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+.++++|+++||||+|...|...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999999865
No 308
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.04 E-value=0.019 Score=40.22 Aligned_cols=26 Identities=15% Similarity=0.051 Sum_probs=21.3
Q ss_pred eeEeeeeeeccCCCchhHHHHHHhcC
Q psy7554 20 QVYLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 20 ~~~~~~li~GpTasGKS~lai~LA~~ 45 (115)
.--+.++|+|++++|||+|...|...
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC-
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34456889999999999999999754
No 309
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.04 E-value=0.016 Score=40.84 Aligned_cols=23 Identities=9% Similarity=-0.062 Sum_probs=20.2
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+-+.|+||.|+|||+|...|+..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 45789999999999999999865
No 310
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.04 E-value=0.015 Score=44.57 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=21.8
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcC
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~ 45 (115)
.+.+++. |+||.|||||+|..-|+.-
T Consensus 44 ~~Ge~~~---l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHA---IMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEE---EECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEE---EECCCCCCHHHHHHHHhCC
Confidence 4566666 8999999999999988875
No 311
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.04 E-value=0.011 Score=43.95 Aligned_cols=39 Identities=13% Similarity=0.113 Sum_probs=25.5
Q ss_pred CccccceeeeeccC-CCceeEeeeeeeccCCCchhHHHHHHhc
Q psy7554 3 LRPATHYQVNLLTG-TPDQVYLSYLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 3 ~~~~~~~~~~~~~~-~~~~~~~~~li~GpTasGKS~lai~LA~ 44 (115)
+||.+--+...|.+ .+.+++. |+||.|||||+|..-|+.
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~---liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVF---GLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEE---EECCTTSSTTHHHHHHHH
T ss_pred cccCCHhHHHHHHhccCCCEEE---EECCCCCCHHHHHHHHhc
Confidence 45555443322222 3556665 899999999999887764
No 312
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.03 E-value=0.014 Score=43.97 Aligned_cols=31 Identities=3% Similarity=-0.195 Sum_probs=23.9
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+.+++. |.||.|||||+|..-|+.-. .|+|
T Consensus 30 ~~Ge~~~---l~G~nGsGKSTLl~~l~Gl~~p~~G~i 63 (240)
T 1ji0_A 30 PRGQIVT---LIGANGAGKTTTLSAIAGLVRAQKGKI 63 (240)
T ss_dssp ETTCEEE---EECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred cCCCEEE---EECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 3556665 89999999999998888543 3666
No 313
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.03 E-value=0.009 Score=42.69 Aligned_cols=21 Identities=10% Similarity=-0.186 Sum_probs=18.6
Q ss_pred eeeeccCCCchhHHHHHHhcC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~ 45 (115)
++|+|..|||||+|..+|+..
T Consensus 41 i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 41 FDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 567899999999999999865
No 314
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.02 E-value=0.013 Score=44.01 Aligned_cols=31 Identities=6% Similarity=-0.150 Sum_probs=23.9
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+.+++. |+||.|||||+|..-|+.-. .|.|
T Consensus 33 ~~Ge~~~---iiG~NGsGKSTLlk~l~Gl~~p~~G~I 66 (214)
T 1sgw_A 33 EKGNVVN---FHGPNGIGKTTLLKTISTYLKPLKGEI 66 (214)
T ss_dssp ETTCCEE---EECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred cCCCEEE---EECCCCCCHHHHHHHHhcCCCCCCeEE
Confidence 3556665 89999999999998888654 3666
No 315
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.02 E-value=0.013 Score=44.81 Aligned_cols=31 Identities=3% Similarity=-0.272 Sum_probs=24.3
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+.+++. |+||.|||||+|..-|+.-+ .|+|
T Consensus 30 ~~Ge~~~---liG~nGsGKSTLlk~l~Gl~~p~~G~i 63 (262)
T 1b0u_A 30 RAGDVIS---IIGSSGSGKSTFLRCINFLEKPSEGAI 63 (262)
T ss_dssp CTTCEEE---EECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred cCCCEEE---EECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 4666666 89999999999999888544 3666
No 316
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.00 E-value=0.013 Score=41.37 Aligned_cols=24 Identities=8% Similarity=-0.067 Sum_probs=20.7
Q ss_pred eeeeeeccCCCchhHHHHHHhcCC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~ 46 (115)
+-+.|+||.|||||+|...++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 457899999999999999998653
No 317
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.00 E-value=0.016 Score=40.19 Aligned_cols=23 Identities=9% Similarity=-0.061 Sum_probs=20.1
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+.++|+|++++|||+|...|...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45889999999999999998854
No 318
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.00 E-value=0.015 Score=44.60 Aligned_cols=31 Identities=3% Similarity=-0.082 Sum_probs=24.3
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+.+++. |.||.|||||+|..-|+.-. .|+|
T Consensus 39 ~~Gei~~---l~G~NGsGKSTLlk~l~Gl~~p~~G~I 72 (256)
T 1vpl_A 39 EEGEIFG---LIGPNGAGKTTTLRIISTLIKPSSGIV 72 (256)
T ss_dssp CTTCEEE---EECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred cCCcEEE---EECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 4666766 89999999999999888544 3566
No 319
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.97 E-value=0.015 Score=38.80 Aligned_cols=21 Identities=14% Similarity=-0.088 Sum_probs=18.5
Q ss_pred eeeeeccCCCchhHHHHHHhc
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~ 44 (115)
-++++|++++|||+|...+..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 467899999999999999864
No 320
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.97 E-value=0.015 Score=38.88 Aligned_cols=23 Identities=17% Similarity=0.021 Sum_probs=19.5
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+.++++|++++|||+|...|..+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35788999999999999999643
No 321
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.95 E-value=0.017 Score=39.19 Aligned_cols=23 Identities=9% Similarity=0.050 Sum_probs=19.5
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+.++++|++++|||+|...|...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35788999999999999988743
No 322
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.94 E-value=0.017 Score=39.44 Aligned_cols=23 Identities=9% Similarity=0.017 Sum_probs=20.0
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+-++++|+++||||+|...|..+
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999998854
No 323
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=94.94 E-value=0.0079 Score=51.36 Aligned_cols=27 Identities=4% Similarity=-0.229 Sum_probs=23.3
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceE
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFC 50 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI 50 (115)
.+|+.||+|+|||.||..+|+..+...
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~ 355 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAV 355 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEE
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCce
Confidence 577899999999999999999876443
No 324
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.94 E-value=0.014 Score=42.80 Aligned_cols=21 Identities=10% Similarity=-0.050 Sum_probs=17.8
Q ss_pred eeeeccCCCchhHHHHHHhcC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~ 45 (115)
+.|+||+|||||+|...||..
T Consensus 4 i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHhh
Confidence 348999999999998888854
No 325
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.92 E-value=0.014 Score=47.59 Aligned_cols=21 Identities=5% Similarity=-0.108 Sum_probs=19.0
Q ss_pred eeeeccCCCchhHHHHHHhcC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~ 45 (115)
++|.||+|+|||.||..+|..
T Consensus 126 iLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHh
Confidence 469999999999999999975
No 326
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.92 E-value=0.019 Score=39.42 Aligned_cols=24 Identities=13% Similarity=-0.029 Sum_probs=20.5
Q ss_pred eeeeeeccCCCchhHHHHHHhcCC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~ 46 (115)
+.++++|+++||||+|...+..+.
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 457889999999999999998654
No 327
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.91 E-value=0.016 Score=44.30 Aligned_cols=34 Identities=3% Similarity=-0.321 Sum_probs=25.5
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhcCC---CceEee
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFCRT 52 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI~I 52 (115)
=.+.+++. |+||.|||||+|..-|+.-. .|+|.+
T Consensus 30 i~~Ge~~~---liG~nGsGKSTLl~~i~Gl~~p~~G~I~~ 66 (266)
T 2yz2_A 30 INEGECLL---VAGNTGSGKSTLLQIVAGLIEPTSGDVLY 66 (266)
T ss_dssp ECTTCEEE---EECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EcCCCEEE---EECCCCCcHHHHHHHHhCCCCCCCcEEEE
Confidence 34666666 89999999999998888544 366633
No 328
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.90 E-value=0.0075 Score=43.77 Aligned_cols=22 Identities=0% Similarity=-0.298 Sum_probs=18.4
Q ss_pred eeeeccCCCchhHHHHHHhcCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~ 46 (115)
+.|+||+|||||+|...|+..+
T Consensus 5 v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 5 LSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999998887543
No 329
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.88 E-value=0.077 Score=41.82 Aligned_cols=37 Identities=8% Similarity=-0.276 Sum_probs=23.9
Q ss_pred eeeeccCCCchhHHHHHHhcC-----CCceEeeccceeeeccC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDG-----PDLFCRTYQVYLMVYKG 62 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~-----~~~eI~IsaDSmQVYkg 62 (115)
+.|+|+.|+|||+|+.+|+.. ....+ +.+|...-+.+
T Consensus 82 I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~v-i~~Dp~~~~~~ 123 (355)
T 3p32_A 82 VGITGVPGVGKSTAIEALGMHLIERGHRVAV-LAVDPSSTRTG 123 (355)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTCCEEE-EEEC-------
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCceEE-EecCCCCCccc
Confidence 568999999999999998744 34456 77885444433
No 330
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.87 E-value=0.023 Score=38.48 Aligned_cols=23 Identities=0% Similarity=-0.162 Sum_probs=20.1
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+.++++|++++|||+|...|...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999998754
No 331
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.87 E-value=0.0042 Score=50.89 Aligned_cols=23 Identities=9% Similarity=-0.211 Sum_probs=20.4
Q ss_pred eeeeccCCCchhHHHHHHhcCCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD 47 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~ 47 (115)
++++|..|||||.++..||+.++
T Consensus 42 IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 42 IVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 56899999999999999998753
No 332
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.87 E-value=0.016 Score=44.63 Aligned_cols=33 Identities=12% Similarity=-0.102 Sum_probs=24.6
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceEee
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFCRT 52 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI~I 52 (115)
.+.+++. |+||.|||||+|..-|+.-+ .|+|.+
T Consensus 43 ~~Ge~~~---i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~ 78 (271)
T 2ixe_A 43 YPGKVTA---LVGPNGSGKSTVAALLQNLYQPTGGKVLL 78 (271)
T ss_dssp CTTCEEE---EECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred CCCCEEE---EECCCCCCHHHHHHHHhcCCCCCCCEEEE
Confidence 3555555 89999999999998888654 366633
No 333
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.86 E-value=0.014 Score=39.74 Aligned_cols=22 Identities=18% Similarity=-0.073 Sum_probs=19.1
Q ss_pred eeeeeeccCCCchhHHHHHHhc
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~ 44 (115)
+.++++|+++||||+|...+..
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3577899999999999999974
No 334
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.84 E-value=0.018 Score=43.68 Aligned_cols=28 Identities=4% Similarity=-0.241 Sum_probs=22.8
Q ss_pred eeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 20 QVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 20 ~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
+++. |.||.|||||+|..-|+--. .|+|
T Consensus 25 e~~~---liG~nGsGKSTLl~~l~Gl~~p~~G~i 55 (240)
T 2onk_A 25 DYCV---LLGPTGAGKSVFLELIAGIVKPDRGEV 55 (240)
T ss_dssp SEEE---EECCTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred EEEE---EECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 6666 89999999999999988554 3666
No 335
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.84 E-value=0.014 Score=42.53 Aligned_cols=21 Identities=5% Similarity=-0.197 Sum_probs=18.0
Q ss_pred eeeeccCCCchhHHHHHHhcC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~ 45 (115)
+.|+||.|||||+|...|++.
T Consensus 9 i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 9 LAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHh
Confidence 458999999999998888754
No 336
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.82 E-value=0.015 Score=52.06 Aligned_cols=35 Identities=6% Similarity=-0.191 Sum_probs=29.2
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCceEeeccceeee
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMV 59 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQV 59 (115)
.+|+.||.|+|||.||..+|.+.+... ++.+.-.+
T Consensus 513 gvLl~GPPGtGKT~lAkaiA~e~~~~f-~~v~~~~l 547 (806)
T 3cf2_A 513 GVLFYGPPGCGKTLLAKAIANECQANF-ISIKGPEL 547 (806)
T ss_dssp CCEEESSTTSSHHHHHHHHHHTTTCEE-EECCHHHH
T ss_pred eEEEecCCCCCchHHHHHHHHHhCCce-EEeccchh
Confidence 567899999999999999999999887 66654443
No 337
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.81 E-value=0.017 Score=47.54 Aligned_cols=25 Identities=12% Similarity=0.046 Sum_probs=20.7
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhc
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~ 44 (115)
.|.++++ |+|++|+|||+|++++|.
T Consensus 195 ~~G~lii---IaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 195 KRRNFVL---IAARPSMGKTAFALKQAK 219 (444)
T ss_dssp CSSCEEE---EEECSSSSHHHHHHHHHH
T ss_pred CCCcEEE---EEeCCCCChHHHHHHHHH
Confidence 3556665 999999999999998874
No 338
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.80 E-value=0.019 Score=38.79 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=19.9
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+.++++|++++|||+|...|...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45789999999999999998754
No 339
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.78 E-value=0.014 Score=46.06 Aligned_cols=23 Identities=9% Similarity=-0.230 Sum_probs=19.8
Q ss_pred eeeeccCCCchhHHHHHHhcCCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD 47 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~ 47 (115)
+.|+||+|||||+|+..|+..++
T Consensus 173 ~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 173 VAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp EEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 34899999999999999997654
No 340
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.78 E-value=0.018 Score=43.96 Aligned_cols=31 Identities=3% Similarity=-0.265 Sum_probs=23.8
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+.+++. |.||.|||||+|..-|+.-+ .|+|
T Consensus 29 ~~Ge~~~---l~G~nGsGKSTLl~~l~Gl~~p~~G~I 62 (253)
T 2nq2_C 29 NKGDILA---VLGQNGCGKSTLLDLLLGIHRPIQGKI 62 (253)
T ss_dssp ETTCEEE---EECCSSSSHHHHHHHHTTSSCCSEEEE
T ss_pred CCCCEEE---EECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 3556655 89999999999998888654 3666
No 341
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.78 E-value=0.022 Score=48.30 Aligned_cols=32 Identities=6% Similarity=-0.199 Sum_probs=25.3
Q ss_pred eeeeeccCCCchhHHHHHHhc-----CCCceEeeccce
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTD-----GPDLFCRTYQVY 56 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~-----~~~~eI~IsaDS 56 (115)
.++|+|++|||||+++.+||. +...-+ |.+|.
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVll-Vd~D~ 139 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCL-ICADT 139 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE-EEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEE-Eeccc
Confidence 356889999999999999994 345556 88875
No 342
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.76 E-value=0.022 Score=39.45 Aligned_cols=24 Identities=8% Similarity=-0.032 Sum_probs=20.4
Q ss_pred EeeeeeeccCCCchhHHHHHHhcC
Q psy7554 22 YLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 22 ~~~~li~GpTasGKS~lai~LA~~ 45 (115)
-+-++|+|+++||||+|...|...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356889999999999999998744
No 343
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.75 E-value=0.027 Score=41.82 Aligned_cols=19 Identities=11% Similarity=-0.046 Sum_probs=16.6
Q ss_pred eeeeccCCCchhHHHHHHh
Q psy7554 25 YLSCLPDSVCPHAHQVDLT 43 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA 43 (115)
++|+|+.|||||.+|+.++
T Consensus 8 ~l~tG~pGsGKT~~a~~~~ 26 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMM 26 (199)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 4599999999999998864
No 344
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.75 E-value=0.021 Score=39.46 Aligned_cols=24 Identities=8% Similarity=0.047 Sum_probs=20.3
Q ss_pred EeeeeeeccCCCchhHHHHHHhcC
Q psy7554 22 YLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 22 ~~~~li~GpTasGKS~lai~LA~~ 45 (115)
-+.++++|+++||||+|...|...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 356889999999999999998743
No 345
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.74 E-value=0.018 Score=39.89 Aligned_cols=22 Identities=5% Similarity=-0.141 Sum_probs=19.3
Q ss_pred eeeeeccCCCchhHHHHHHhcC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~ 45 (115)
.++|+|++++|||+|...|+..
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999865
No 346
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.74 E-value=0.02 Score=39.18 Aligned_cols=23 Identities=22% Similarity=0.140 Sum_probs=20.2
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+.++++|++++|||+|...|...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999754
No 347
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.74 E-value=0.0067 Score=53.47 Aligned_cols=34 Identities=6% Similarity=-0.201 Sum_probs=26.8
Q ss_pred eeeeccCCCchhHHHHHHhcCCCceEeeccceeee
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMV 59 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~eI~IsaDSmQV 59 (115)
+++.||+|+|||.||..+|..++... +..+.-.+
T Consensus 514 vLL~GppGtGKT~Lakala~~~~~~~-i~v~~~~l 547 (806)
T 1ypw_A 514 VLFYGPPGCGKTLLAKAIANECQANF-ISIKGPEL 547 (806)
T ss_dssp CCCBCCTTSSHHHHHHHHHHHHTCCC-CCCCCSSS
T ss_pred eEEECCCCCCHHHHHHHHHHHhCCCE-EEEechHh
Confidence 56899999999999999999887666 55544333
No 348
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.73 E-value=0.028 Score=38.25 Aligned_cols=23 Identities=9% Similarity=-0.089 Sum_probs=19.8
Q ss_pred EeeeeeeccCCCchhHHHHHHhc
Q psy7554 22 YLSYLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 22 ~~~~li~GpTasGKS~lai~LA~ 44 (115)
-+-++++|++++|||+|...|..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 34578899999999999999983
No 349
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.73 E-value=0.02 Score=40.11 Aligned_cols=23 Identities=9% Similarity=0.017 Sum_probs=20.3
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+-++|+|++++|||+|...|...
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 56889999999999999999754
No 350
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.73 E-value=0.018 Score=44.68 Aligned_cols=31 Identities=3% Similarity=-0.197 Sum_probs=23.8
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+.+++. |+||.|||||+|..-|+.-+ .|+|
T Consensus 45 ~~Ge~~~---liG~NGsGKSTLlk~l~Gl~~p~~G~I 78 (279)
T 2ihy_A 45 AKGDKWI---LYGLNGAGKTTLLNILNAYEPATSGTV 78 (279)
T ss_dssp ETTCEEE---EECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred cCCCEEE---EECCCCCcHHHHHHHHhCCCCCCCeEE
Confidence 3556655 89999999999999888654 3666
No 351
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.73 E-value=0.02 Score=39.77 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=20.1
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+-++++|++++|||+|...|...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45889999999999999999854
No 352
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.73 E-value=0.024 Score=39.56 Aligned_cols=24 Identities=17% Similarity=0.069 Sum_probs=20.7
Q ss_pred EeeeeeeccCCCchhHHHHHHhcC
Q psy7554 22 YLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 22 ~~~~li~GpTasGKS~lai~LA~~ 45 (115)
.+-++|+|+++||||+|...|...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999999864
No 353
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.73 E-value=0.0093 Score=41.91 Aligned_cols=22 Identities=9% Similarity=-0.112 Sum_probs=18.2
Q ss_pred eeeeccCCCchhHHHHHHhcCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~ 46 (115)
+.|+|++|+|||+|...|+...
T Consensus 29 v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 29 VAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp EEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999998887544
No 354
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.72 E-value=0.018 Score=44.46 Aligned_cols=31 Identities=10% Similarity=-0.147 Sum_probs=24.2
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+.+++. |+||.|||||+|..-|+.-+ .|+|
T Consensus 48 ~~Gei~~---liG~NGsGKSTLlk~l~Gl~~p~~G~I 81 (263)
T 2olj_A 48 REGEVVV---VIGPSGSGKSTFLRCLNLLEDFDEGEI 81 (263)
T ss_dssp CTTCEEE---EECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred cCCCEEE---EEcCCCCcHHHHHHHHHcCCCCCCcEE
Confidence 4566666 89999999999998888544 3666
No 355
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.71 E-value=0.018 Score=39.09 Aligned_cols=23 Identities=9% Similarity=0.094 Sum_probs=19.7
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+-++++|++++|||+|...+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35788999999999999999854
No 356
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.70 E-value=0.017 Score=42.75 Aligned_cols=26 Identities=8% Similarity=-0.134 Sum_probs=21.0
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHhcCC
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA~~~ 46 (115)
+..+++ ++||.+||||..++++|.+.
T Consensus 7 ~g~i~v---~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 7 HGWVEV---IVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp CCEEEE---EECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEE---EECCCCCcHHHHHHHHHHHH
Confidence 345655 89999999999999988654
No 357
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.69 E-value=0.021 Score=39.24 Aligned_cols=23 Identities=13% Similarity=0.078 Sum_probs=20.1
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+-++|+|++++|||+|...|...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45889999999999999999854
No 358
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.68 E-value=0.021 Score=39.72 Aligned_cols=23 Identities=9% Similarity=-0.044 Sum_probs=20.0
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+-++|+|++++|||+|...|...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45889999999999999998754
No 359
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.68 E-value=0.024 Score=39.19 Aligned_cols=23 Identities=4% Similarity=-0.117 Sum_probs=19.9
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+.++++|+++||||+|...|..+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 45788999999999999999854
No 360
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.67 E-value=0.018 Score=45.99 Aligned_cols=24 Identities=13% Similarity=0.025 Sum_probs=19.9
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHhc
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA~ 44 (115)
+.++++ |.||.|||||.|++.+|.
T Consensus 60 ~G~iv~---I~G~pGsGKTtLal~la~ 83 (349)
T 2zr9_A 60 RGRVIE---IYGPESSGKTTVALHAVA 83 (349)
T ss_dssp TTSEEE---EEESTTSSHHHHHHHHHH
T ss_pred CCeEEE---EECCCCCCHHHHHHHHHH
Confidence 445555 899999999999999884
No 361
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.66 E-value=0.0052 Score=52.52 Aligned_cols=23 Identities=9% Similarity=-0.236 Sum_probs=21.1
Q ss_pred eeeeccCCCchhHHHHHHhcCCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD 47 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~ 47 (115)
++|+|+.|||||++|..|+++++
T Consensus 399 I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 399 IFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEeecCCCCCHHHHHHHHHHHhc
Confidence 56899999999999999999876
No 362
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.64 E-value=0.013 Score=46.38 Aligned_cols=34 Identities=15% Similarity=-0.125 Sum_probs=24.9
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhcCC---CceEee
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFCRT 52 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI~I 52 (115)
=.+.+++. |+||+|||||+|..-|+.-+ .|+|.+
T Consensus 77 i~~Ge~va---ivG~sGsGKSTLl~ll~gl~~p~~G~I~i 113 (306)
T 3nh6_A 77 VMPGQTLA---LVGPSGAGKSTILRLLFRFYDISSGCIRI 113 (306)
T ss_dssp ECTTCEEE---EESSSCHHHHHHHHHHTTSSCCSEEEEEE
T ss_pred EcCCCEEE---EECCCCchHHHHHHHHHcCCCCCCcEEEE
Confidence 34556655 89999999999998887654 356633
No 363
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.64 E-value=0.022 Score=39.40 Aligned_cols=27 Identities=19% Similarity=0.130 Sum_probs=21.7
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHhcC
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA~~ 45 (115)
++.. +-++|+|++++|||+|...|...
T Consensus 19 ~~~~-~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 19 SDYM-FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp CSEE-EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cCce-eEEEEECCCCCCHHHHHHHHHcC
Confidence 3443 45889999999999999999754
No 364
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.63 E-value=0.014 Score=45.00 Aligned_cols=23 Identities=0% Similarity=-0.263 Sum_probs=19.7
Q ss_pred eeee--eccCCCchhHHHHHHhcCC
Q psy7554 24 SYLS--CLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 24 ~~li--~GpTasGKS~lai~LA~~~ 46 (115)
.++| .||.|+|||.|+..+++.+
T Consensus 52 ~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp EEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 4567 9999999999999998765
No 365
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.63 E-value=0.022 Score=39.22 Aligned_cols=24 Identities=4% Similarity=-0.119 Sum_probs=20.7
Q ss_pred eeeeeeccCCCchhHHHHHHhcCC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~ 46 (115)
+.++++|+++||||+|...|..+.
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999998653
No 366
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.62 E-value=0.024 Score=48.50 Aligned_cols=38 Identities=13% Similarity=-0.127 Sum_probs=27.4
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhcCC---CceEee-ccce
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFCRT-YQVY 56 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI~I-saDS 56 (115)
-.+.+|+. |+||+|||||+|...||..+ +|.|.+ +.|-
T Consensus 290 i~~GeVI~---LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~ 331 (503)
T 2yhs_A 290 GKAPFVIL---MVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT 331 (503)
T ss_dssp SCTTEEEE---EECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCT
T ss_pred ccCCeEEE---EECCCcccHHHHHHHHHHHhhhcCCeEEEecCcc
Confidence 34566766 89999999999999998543 455534 4564
No 367
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.62 E-value=0.03 Score=47.42 Aligned_cols=34 Identities=12% Similarity=-0.247 Sum_probs=25.8
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhcCC---CceEee
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFCRT 52 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI~I 52 (115)
=.|.+++. |+||+|||||+|..-|+.-. .|+|.+
T Consensus 378 i~~G~~~~---ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 414 (598)
T 3qf4_B 378 IKPGQKVA---LVGPTGSGKTTIVNLLMRFYDVDRGQILV 414 (598)
T ss_dssp CCTTCEEE---EECCTTSSTTHHHHHHTTSSCCSEEEEEE
T ss_pred EcCCCEEE---EECCCCCcHHHHHHHHhcCcCCCCeEEEE
Confidence 35667666 89999999999998888655 366644
No 368
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.61 E-value=0.022 Score=39.98 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=20.0
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+.++++|++++|||+|...|...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999753
No 369
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.60 E-value=0.023 Score=39.67 Aligned_cols=23 Identities=13% Similarity=-0.067 Sum_probs=20.1
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+.++++|++++|||+|...|..+
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999999854
No 370
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.59 E-value=0.019 Score=40.53 Aligned_cols=22 Identities=18% Similarity=-0.079 Sum_probs=19.4
Q ss_pred eeeeeccCCCchhHHHHHHhcC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~ 45 (115)
.++++|+++||||+|...|...
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4778999999999999999854
No 371
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=94.58 E-value=0.019 Score=40.25 Aligned_cols=14 Identities=0% Similarity=-0.135 Sum_probs=12.3
Q ss_pred eeeeccCCCchhHH
Q psy7554 25 YLSCLPDSVCPHAH 38 (115)
Q Consensus 25 ~li~GpTasGKS~l 38 (115)
+++.+|||||||..
T Consensus 41 ~li~~~TGsGKT~~ 54 (207)
T 2gxq_A 41 LIGQARTGTGKTLA 54 (207)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEECCCCChHHHH
Confidence 66899999999965
No 372
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.58 E-value=0.021 Score=45.98 Aligned_cols=26 Identities=4% Similarity=-0.008 Sum_probs=21.8
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcC
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~ 45 (115)
.|.++++ |+|++|+|||+|++.+|..
T Consensus 44 ~~G~Lii---IaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 44 NKGSLVI---IGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp CTTCEEE---EEECTTSCHHHHHHHHHHH
T ss_pred CCCcEEE---EEeCCCCCHHHHHHHHHHH
Confidence 4666666 9999999999999998754
No 373
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.57 E-value=0.031 Score=47.00 Aligned_cols=33 Identities=3% Similarity=-0.263 Sum_probs=24.9
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceEee
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFCRT 52 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI~I 52 (115)
.|.+++. |+||+|||||+|..-|+.-. .|+|.+
T Consensus 367 ~~G~~~~---ivG~sGsGKSTLl~~l~g~~~p~~G~i~~ 402 (582)
T 3b60_A 367 PAGKTVA---LVGRSGSGKSTIASLITRFYDIDEGHILM 402 (582)
T ss_dssp CTTCEEE---EEECTTSSHHHHHHHHTTTTCCSEEEEEE
T ss_pred cCCCEEE---EECCCCCCHHHHHHHHhhccCCCCCeEEE
Confidence 4555555 89999999999999888654 366633
No 374
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=94.56 E-value=0.018 Score=45.98 Aligned_cols=16 Identities=6% Similarity=-0.074 Sum_probs=13.4
Q ss_pred eeccCCCchhHHHHHH
Q psy7554 27 SCLPDSVCPHAHQVDL 42 (115)
Q Consensus 27 i~GpTasGKS~lai~L 42 (115)
|+||||||||+|--.+
T Consensus 28 i~G~NGaGKTTll~ai 43 (365)
T 3qf7_A 28 VEGPNGAGKSSLFEAI 43 (365)
T ss_dssp EECCTTSSHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 8999999999994443
No 375
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.56 E-value=0.012 Score=50.08 Aligned_cols=24 Identities=8% Similarity=-0.157 Sum_probs=21.8
Q ss_pred eeeeccCCCchhHHHHHHhcCCCc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDL 48 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~ 48 (115)
|+++|+.|||||++|..||++++.
T Consensus 398 I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 398 IVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEECTTCCSCHHHHHHHHHHHHTT
T ss_pred EEecccCCCCHHHHHHHHHHHHHH
Confidence 667999999999999999999873
No 376
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.55 E-value=0.024 Score=39.85 Aligned_cols=28 Identities=14% Similarity=0.064 Sum_probs=21.6
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHhcC
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA~~ 45 (115)
|..--+-++++|++++|||+|...|...
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 4444566889999999999999999854
No 377
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.53 E-value=0.011 Score=44.09 Aligned_cols=23 Identities=9% Similarity=-0.035 Sum_probs=20.4
Q ss_pred eeeeccCCCchhHHHHHHhcCCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD 47 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~ 47 (115)
|++.||.|||||+++-.|++.++
T Consensus 9 i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 9 VTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999998764
No 378
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.52 E-value=0.03 Score=43.77 Aligned_cols=30 Identities=3% Similarity=-0.318 Sum_probs=22.6
Q ss_pred eeeccCCCchhHHHHHHhcCC-----CceEeeccce
Q psy7554 26 LSCLPDSVCPHAHQVDLTDGP-----DLFCRTYQVY 56 (115)
Q Consensus 26 li~GpTasGKS~lai~LA~~~-----~~eI~IsaDS 56 (115)
+++|++|+|||.++..||..+ ...+ +.+|-
T Consensus 102 ~i~G~~G~GKTT~~~~la~~~~~~g~~v~l-~~~D~ 136 (297)
T 1j8m_F 102 MLVGVQGTGKTTTAGKLAYFYKKKGFKVGL-VGADV 136 (297)
T ss_dssp EEECSSCSSTTHHHHHHHHHHHHTTCCEEE-EECCC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEEE-EecCC
Confidence 368999999999999998433 3345 77773
No 379
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.50 E-value=0.025 Score=39.86 Aligned_cols=23 Identities=4% Similarity=0.043 Sum_probs=19.7
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+.++|+|+++||||+|...|...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46889999999999999999754
No 380
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.47 E-value=0.037 Score=38.26 Aligned_cols=28 Identities=11% Similarity=0.146 Sum_probs=22.8
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHhcC
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA~~ 45 (115)
+..--+-++++|++++|||+|...|...
T Consensus 14 ~~~~~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 14 PGALMLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3344567899999999999999999854
No 381
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.47 E-value=0.0093 Score=50.63 Aligned_cols=31 Identities=3% Similarity=-0.385 Sum_probs=25.3
Q ss_pred eeeeccCCCchhHHHHHHhcCCCc-----eEeeccce
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDL-----FCRTYQVY 56 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~-----eI~IsaDS 56 (115)
++++|+.|||||++|..|++.++. .+ +..|.
T Consensus 375 I~l~G~~GsGKSTia~~La~~L~~~G~~~~~-ld~D~ 410 (546)
T 2gks_A 375 VWLTGLPCAGKSTIAEILATMLQARGRKVTL-LDGDV 410 (546)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEE-ECHHH
T ss_pred EEccCCCCCCHHHHHHHHHHHhhhcCCeEEE-ECchH
Confidence 567999999999999999998753 55 66664
No 382
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.45 E-value=0.03 Score=39.01 Aligned_cols=24 Identities=8% Similarity=-0.119 Sum_probs=20.8
Q ss_pred EeeeeeeccCCCchhHHHHHHhcC
Q psy7554 22 YLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 22 ~~~~li~GpTasGKS~lai~LA~~ 45 (115)
-+.++|+|++++|||+|...|...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 356889999999999999999754
No 383
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.45 E-value=0.022 Score=41.06 Aligned_cols=23 Identities=4% Similarity=-0.089 Sum_probs=20.0
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
.-++++|++++|||+|...|...
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45788999999999999999764
No 384
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.43 E-value=0.02 Score=46.09 Aligned_cols=25 Identities=8% Similarity=0.044 Sum_probs=20.1
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHhcC
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA~~ 45 (115)
+..+++ |+||.|||||.||+.+|..
T Consensus 62 ~G~ii~---I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 62 MGRIVE---IYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp TTSEEE---EECSTTSSHHHHHHHHHHH
T ss_pred CCeEEE---EECCCCCCHHHHHHHHHHH
Confidence 344554 8999999999999998853
No 385
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.42 E-value=0.024 Score=45.94 Aligned_cols=25 Identities=4% Similarity=-0.110 Sum_probs=20.3
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHhcC
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA~~ 45 (115)
+.++.+ |.||.|||||.|+..+|..
T Consensus 60 ~G~i~~---I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 60 RGRIVE---IFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp TTEEEE---EEESTTSSHHHHHHHHHHH
T ss_pred CCcEEE---EECCCCCCHHHHHHHHHHH
Confidence 345555 9999999999999998854
No 386
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.40 E-value=0.03 Score=39.00 Aligned_cols=23 Identities=13% Similarity=0.034 Sum_probs=19.6
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+.++++|++++|||+|...+...
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45889999999999999999854
No 387
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.39 E-value=0.025 Score=42.34 Aligned_cols=18 Identities=6% Similarity=-0.163 Sum_probs=13.9
Q ss_pred eeeeeccCCCchhHHHHH
Q psy7554 24 SYLSCLPDSVCPHAHQVD 41 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~ 41 (115)
++++.+|||||||..++.
T Consensus 46 ~~l~~~~TGsGKT~~~~~ 63 (367)
T 1hv8_A 46 NIVAQARTGSGKTASFAI 63 (367)
T ss_dssp EEEEECCSSSSHHHHHHH
T ss_pred CEEEECCCCChHHHHHHH
Confidence 355799999999976543
No 388
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.38 E-value=0.021 Score=39.65 Aligned_cols=24 Identities=13% Similarity=-0.035 Sum_probs=20.8
Q ss_pred eeeeeeccCCCchhHHHHHHhcCC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~ 46 (115)
..++++|+.++|||+|...|....
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 357889999999999999998764
No 389
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.37 E-value=0.028 Score=38.74 Aligned_cols=23 Identities=9% Similarity=0.060 Sum_probs=19.7
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+.++++|+++||||+|...|...
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 35788999999999999999753
No 390
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.37 E-value=0.031 Score=38.52 Aligned_cols=30 Identities=10% Similarity=0.061 Sum_probs=21.9
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~ 46 (115)
.|..-..-++|+|+.++|||+|...|....
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 344555668899999999999999997643
No 391
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.34 E-value=0.036 Score=46.61 Aligned_cols=33 Identities=3% Similarity=-0.345 Sum_probs=24.8
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceEee
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFCRT 52 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI~I 52 (115)
.|.+++. |+||+|||||+|..-|+.-. .|+|.+
T Consensus 367 ~~G~~~~---ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 402 (582)
T 3b5x_A 367 PQGKTVA---LVGRSGSGKSTIANLFTRFYDVDSGSICL 402 (582)
T ss_pred CCCCEEE---EECCCCCCHHHHHHHHhcCCCCCCCEEEE
Confidence 4556655 89999999999998888654 466633
No 392
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.34 E-value=0.018 Score=39.07 Aligned_cols=23 Identities=9% Similarity=-0.145 Sum_probs=19.9
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+-++++|+.++|||+|..++..+
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35788999999999999999864
No 393
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.33 E-value=0.028 Score=39.02 Aligned_cols=23 Identities=4% Similarity=-0.107 Sum_probs=19.9
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+-++++|+.++|||+|...|...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999999843
No 394
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=94.32 E-value=0.041 Score=43.85 Aligned_cols=48 Identities=13% Similarity=0.046 Sum_probs=32.4
Q ss_pred CCCccccceeeeeccCCCceeEeeeeeeccCCCchhHHHHHHhcCC-----CceEeeccc
Q psy7554 1 MSLRPATHYQVNLLTGTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP-----DLFCRTYQV 55 (115)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~li~GpTasGKS~lai~LA~~~-----~~eI~IsaD 55 (115)
|+|||.-.+ ++......|. ++.|--|+|||.+|..||..+ ..-+ |.+|
T Consensus 1 ~~l~~~l~~---~l~~~~~~i~---~~sgkGGvGKTt~a~~lA~~la~~g~~vll-id~D 53 (334)
T 3iqw_A 1 MSMEPTLQS---ILDQRSLRWI---FVGGKGGVGKTTTSCSLAIQLAKVRRSVLL-LSTD 53 (334)
T ss_dssp -CCCSSSHH---HHHCTTCCEE---EEECSTTSSHHHHHHHHHHHHTTSSSCEEE-EECC
T ss_pred CCccccHHH---HhcCCCeEEE---EEeCCCCccHHHHHHHHHHHHHhCCCcEEE-EECC
Confidence 788887653 4544434333 579999999999888887432 3445 8888
No 395
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.32 E-value=0.028 Score=39.32 Aligned_cols=23 Identities=17% Similarity=-0.172 Sum_probs=20.1
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+-++|+|+.+||||+|..++...
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999888754
No 396
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.31 E-value=0.024 Score=46.42 Aligned_cols=23 Identities=4% Similarity=-0.263 Sum_probs=19.2
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHh
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLT 43 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA 43 (115)
+.+++. |+||.|||||.|+..||
T Consensus 177 ~Gei~~---I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 177 TGSITE---LFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp TTSEEE---EEESTTSSHHHHHHHHH
T ss_pred CCcEEE---EEcCCCCChHHHHHHHH
Confidence 455655 99999999999999776
No 397
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=94.28 E-value=0.025 Score=39.77 Aligned_cols=16 Identities=6% Similarity=0.002 Sum_probs=12.8
Q ss_pred eeeeccCCCchhHHHH
Q psy7554 25 YLSCLPDSVCPHAHQV 40 (115)
Q Consensus 25 ~li~GpTasGKS~lai 40 (115)
+++.+|||||||..++
T Consensus 43 ~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 43 ILARAKNGTGKSGAYL 58 (206)
T ss_dssp EEEECCSSSTTHHHHH
T ss_pred EEEECCCCCchHHHHH
Confidence 5689999999995433
No 398
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.28 E-value=0.017 Score=39.40 Aligned_cols=24 Identities=8% Similarity=0.033 Sum_probs=10.1
Q ss_pred EeeeeeeccCCCchhHHHHHHhcC
Q psy7554 22 YLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 22 ~~~~li~GpTasGKS~lai~LA~~ 45 (115)
-+.++++|+++||||+|...|...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356889999999999999888754
No 399
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.28 E-value=0.023 Score=39.38 Aligned_cols=24 Identities=13% Similarity=-0.056 Sum_probs=20.2
Q ss_pred eeeeeeccCCCchhHHHHHHhcCC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~ 46 (115)
+-++++|++++|||+|...|....
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 357889999999999999997543
No 400
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.27 E-value=0.02 Score=47.04 Aligned_cols=24 Identities=4% Similarity=-0.090 Sum_probs=20.1
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHhc
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA~ 44 (115)
+.++++ |+|++|+|||+|++++|.
T Consensus 241 ~G~l~l---i~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 241 GGEVIM---VTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp TTCEEE---EEESSCHHHHHHHHHHHH
T ss_pred CCeEEE---EeecCCCCchHHHHHHHH
Confidence 455665 999999999999998874
No 401
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=94.27 E-value=0.024 Score=42.55 Aligned_cols=20 Identities=25% Similarity=0.129 Sum_probs=16.8
Q ss_pred eeeeccCCCchhHHHHHHhc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~ 44 (115)
.++++|||+|||..++.++.
T Consensus 131 ~ll~~~tGsGKT~~~~~~~~ 150 (282)
T 1rif_A 131 RILNLPTSAGRSLIQALLAR 150 (282)
T ss_dssp EEECCCTTSCHHHHHHHHHH
T ss_pred eEEEcCCCCCcHHHHHHHHH
Confidence 35799999999998877765
No 402
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.26 E-value=0.032 Score=38.94 Aligned_cols=24 Identities=8% Similarity=-0.114 Sum_probs=20.6
Q ss_pred EeeeeeeccCCCchhHHHHHHhcC
Q psy7554 22 YLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 22 ~~~~li~GpTasGKS~lai~LA~~ 45 (115)
-+-++++|+.+||||+|..++...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 356889999999999999998754
No 403
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.25 E-value=0.03 Score=39.97 Aligned_cols=24 Identities=8% Similarity=0.021 Sum_probs=20.5
Q ss_pred EeeeeeeccCCCchhHHHHHHhcC
Q psy7554 22 YLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 22 ~~~~li~GpTasGKS~lai~LA~~ 45 (115)
-+-++++|++++|||+|...|...
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999999854
No 404
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.25 E-value=0.028 Score=39.23 Aligned_cols=23 Identities=13% Similarity=0.065 Sum_probs=20.0
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+-++|+|++++|||+|...|...
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999998843
No 405
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.23 E-value=0.024 Score=39.80 Aligned_cols=22 Identities=14% Similarity=-0.082 Sum_probs=19.3
Q ss_pred eeeeeccCCCchhHHHHHHhcC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~ 45 (115)
.++++|+.++|||+|...+..+
T Consensus 25 ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999999863
No 406
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=94.20 E-value=0.025 Score=41.91 Aligned_cols=20 Identities=5% Similarity=-0.305 Sum_probs=15.4
Q ss_pred eeeeccCCCchhHHHHHHhc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~ 44 (115)
+++.+|||+|||..+...+.
T Consensus 34 ~lv~~~TGsGKT~~~~~~~~ 53 (337)
T 2z0m_A 34 VVVRAKTGSGKTAAYAIPIL 53 (337)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHHHHH
Confidence 56799999999976555543
No 407
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.19 E-value=0.012 Score=44.76 Aligned_cols=24 Identities=13% Similarity=-0.180 Sum_probs=18.4
Q ss_pred eeeeccCCCchhHHHHHHhcCCCc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDL 48 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~ 48 (115)
|+|.||.|||||+++-.|++.++.
T Consensus 28 I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 28 ITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp EEEECCC---CHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 567999999999999999998854
No 408
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.18 E-value=0.032 Score=38.72 Aligned_cols=25 Identities=12% Similarity=0.082 Sum_probs=21.4
Q ss_pred eEeeeeeeccCCCchhHHHHHHhcC
Q psy7554 21 VYLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 21 ~~~~~li~GpTasGKS~lai~LA~~ 45 (115)
--+-++++|+.++|||+|...+...
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 3456889999999999999999864
No 409
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.16 E-value=0.03 Score=43.11 Aligned_cols=21 Identities=5% Similarity=-0.083 Sum_probs=18.1
Q ss_pred eeeeeccCCCchhHHHHHHhc
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~ 44 (115)
.+.|+||+|+|||+|..-|+.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 467899999999999888774
No 410
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.14 E-value=0.03 Score=43.84 Aligned_cols=31 Identities=3% Similarity=-0.160 Sum_probs=24.1
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+.+++. |+||.|||||+|..-|+.-+ .|+|
T Consensus 62 ~~Ge~~~---i~G~NGsGKSTLlk~l~Gl~~p~~G~I 95 (290)
T 2bbs_A 62 ERGQLLA---VAGSTGAGKTSLLMMIMGELEPSEGKI 95 (290)
T ss_dssp CTTCEEE---EEESTTSSHHHHHHHHTTSSCEEEEEE
T ss_pred cCCCEEE---EECCCCCcHHHHHHHHhcCCCCCCcEE
Confidence 4566666 89999999999998888654 3555
No 411
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.12 E-value=0.026 Score=38.93 Aligned_cols=23 Identities=17% Similarity=0.016 Sum_probs=19.5
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+.++++|++++|||+|...|..+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999643
No 412
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.12 E-value=0.013 Score=48.19 Aligned_cols=25 Identities=4% Similarity=-0.166 Sum_probs=21.8
Q ss_pred eeeeeccCCCchhHHHHHHhcCCCc
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDGPDL 48 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~~~~ 48 (115)
+++|+||.|+|||.++..||+.++.
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCC
Confidence 5778999999999999999987654
No 413
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.12 E-value=0.031 Score=39.52 Aligned_cols=23 Identities=0% Similarity=-0.094 Sum_probs=20.1
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+.++++|+++||||+|...|...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 45788999999999999999864
No 414
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.10 E-value=0.037 Score=38.40 Aligned_cols=23 Identities=17% Similarity=0.085 Sum_probs=20.2
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+-++|+|+.++|||+|...|...
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 45889999999999999998854
No 415
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.10 E-value=0.053 Score=41.96 Aligned_cols=41 Identities=10% Similarity=0.023 Sum_probs=28.9
Q ss_pred eeeeeeccCCCchhHHHHHHhcC-----CCceEeeccce------eeeccCCc
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG-----PDLFCRTYQVY------LMVYKGLD 64 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~-----~~~eI~IsaDS------mQVYkgld 64 (115)
+.+++.|+.|+|||.+++.+|.. ....+ +.+|. ....+++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v-~d~D~q~~~~~~al~~gl~ 58 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMA-GVVETHGRAETEALLNGLP 58 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEE-EECCCTTCHHHHHHHTTSC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEE-EEeCCCCChhHHHHhcCcc
Confidence 44677999999999998888844 34445 77775 34555554
No 416
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=94.09 E-value=0.028 Score=46.06 Aligned_cols=21 Identities=0% Similarity=-0.244 Sum_probs=18.6
Q ss_pred eeeeccCCCchhHHHHHHhcC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~ 45 (115)
++|.||.|+|||+||.+++..
T Consensus 150 v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 150 VTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp EEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEcCCCCCHHHHHHHHHhc
Confidence 568999999999999999764
No 417
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.09 E-value=0.016 Score=43.70 Aligned_cols=24 Identities=13% Similarity=-0.211 Sum_probs=21.7
Q ss_pred eeeeccCCCchhHHHHHHhcCCCc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDL 48 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~ 48 (115)
|++.|+.|||||+++-.|++.++.
T Consensus 8 i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 8 ILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHHHHhcc
Confidence 568999999999999999998875
No 418
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=94.08 E-value=0.028 Score=45.19 Aligned_cols=22 Identities=23% Similarity=0.054 Sum_probs=17.9
Q ss_pred eeeeeccCCCchhHHHHHHhcC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~ 45 (115)
..+++||||+|||..++.++..
T Consensus 130 ~~ll~~~tGsGKT~~~~~~~~~ 151 (510)
T 2oca_A 130 RRILNLPTSAGRSLIQALLARY 151 (510)
T ss_dssp EEEEECCSTTTHHHHHHHHHHH
T ss_pred CcEEEeCCCCCHHHHHHHHHHH
Confidence 3578999999999988777753
No 419
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.08 E-value=0.015 Score=44.43 Aligned_cols=23 Identities=0% Similarity=-0.207 Sum_probs=20.5
Q ss_pred eeeeccCCCchhHHHHHHhcCCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD 47 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~ 47 (115)
|+|.||.|||||+++..|++.++
T Consensus 30 i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 30 IVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp EEEEESTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999998774
No 420
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.07 E-value=0.026 Score=40.46 Aligned_cols=25 Identities=8% Similarity=-0.132 Sum_probs=21.4
Q ss_pred eEeeeeeeccCCCchhHHHHHHhcC
Q psy7554 21 VYLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 21 ~~~~~li~GpTasGKS~lai~LA~~ 45 (115)
.-+-++++|+++||||+|...|...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999999864
No 421
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.07 E-value=0.034 Score=47.10 Aligned_cols=33 Identities=3% Similarity=-0.236 Sum_probs=24.9
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceEee
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFCRT 52 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI~I 52 (115)
.|.+++. |+||+|||||+|..-|+.-+ .|+|.+
T Consensus 367 ~~Ge~~~---ivG~sGsGKSTll~~l~g~~~~~~G~i~i 402 (587)
T 3qf4_A 367 KPGSLVA---VLGETGSGKSTLMNLIPRLIDPERGRVEV 402 (587)
T ss_dssp CTTCEEE---EECSSSSSHHHHHHTTTTSSCCSEEEEEE
T ss_pred cCCCEEE---EECCCCCCHHHHHHHHhCCccCCCcEEEE
Confidence 4556665 89999999999998888655 366633
No 422
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=94.06 E-value=0.024 Score=40.83 Aligned_cols=15 Identities=0% Similarity=-0.113 Sum_probs=12.4
Q ss_pred eeeeccCCCchhHHH
Q psy7554 25 YLSCLPDSVCPHAHQ 39 (115)
Q Consensus 25 ~li~GpTasGKS~la 39 (115)
+++.+|||||||..+
T Consensus 60 ~l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 60 LIVVAQTGTGKTLSY 74 (228)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCChHHHHH
Confidence 568999999999643
No 423
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.05 E-value=0.032 Score=39.51 Aligned_cols=24 Identities=4% Similarity=-0.129 Sum_probs=20.4
Q ss_pred eEeeeeeeccCCCchhHHHHHHhc
Q psy7554 21 VYLSYLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 21 ~~~~~li~GpTasGKS~lai~LA~ 44 (115)
--+-++++|+.+||||+|...++.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 345688999999999999999963
No 424
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=94.04 E-value=0.022 Score=45.39 Aligned_cols=24 Identities=8% Similarity=-0.058 Sum_probs=19.5
Q ss_pred eeeeccCCCchhHHHHHHhcCCCc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDL 48 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~ 48 (115)
.++++|||+|||..++.++...+.
T Consensus 111 ~ll~~~TGsGKT~~~l~~i~~~~~ 134 (472)
T 2fwr_A 111 GCIVLPTGSGKTHVAMAAINELST 134 (472)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCS
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCC
Confidence 668999999999988877765543
No 425
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.01 E-value=0.066 Score=36.41 Aligned_cols=29 Identities=3% Similarity=-0.114 Sum_probs=22.7
Q ss_pred eeEeeeeeeccCCCchhHHHHHHhcCCCc
Q psy7554 20 QVYLSYLSCLPDSVCPHAHQVDLTDGPDL 48 (115)
Q Consensus 20 ~~~~~~li~GpTasGKS~lai~LA~~~~~ 48 (115)
+--+-++++|+.++|||+|...|...+..
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhccc
Confidence 44466889999999999998777666543
No 426
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.01 E-value=0.041 Score=38.84 Aligned_cols=28 Identities=18% Similarity=0.116 Sum_probs=22.3
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcC
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~ 45 (115)
..+.. +-++|+|+.++|||+|...|...
T Consensus 21 ~~~~~-~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 21 DYDYL-IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp CCSEE-EEEEEESCTTSSHHHHHHHHHCS
T ss_pred Cccee-EEEEEECcCCCCHHHHHHHHhcC
Confidence 33444 45889999999999999999864
No 427
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.97 E-value=0.044 Score=38.53 Aligned_cols=26 Identities=0% Similarity=-0.079 Sum_probs=21.9
Q ss_pred eeEeeeeeeccCCCchhHHHHHHhcC
Q psy7554 20 QVYLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 20 ~~~~~~li~GpTasGKS~lai~LA~~ 45 (115)
+.-+.++++|++++|||+|...+...
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567899999999999999999854
No 428
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=93.96 E-value=0.031 Score=40.84 Aligned_cols=17 Identities=6% Similarity=-0.144 Sum_probs=13.7
Q ss_pred eeeccCCCchhHHHHHH
Q psy7554 26 LSCLPDSVCPHAHQVDL 42 (115)
Q Consensus 26 li~GpTasGKS~lai~L 42 (115)
+|+||+|+|||.+.-.|
T Consensus 27 ~I~G~NgsGKStil~ai 43 (203)
T 3qks_A 27 LIIGQNGSGKSSLLDAI 43 (203)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHH
Confidence 48999999999984433
No 429
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.94 E-value=0.027 Score=39.85 Aligned_cols=22 Identities=14% Similarity=-0.078 Sum_probs=19.2
Q ss_pred eeeeeccCCCchhHHHHHHhcC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~ 45 (115)
.++++|+.++|||+|...+..+
T Consensus 27 ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999999753
No 430
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.93 E-value=0.04 Score=41.15 Aligned_cols=22 Identities=5% Similarity=-0.105 Sum_probs=19.1
Q ss_pred eeeeeccCCCchhHHHHHHhcC
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~~ 45 (115)
-++++|.|++|||+|...|...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4678999999999999988754
No 431
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.91 E-value=0.033 Score=41.07 Aligned_cols=23 Identities=9% Similarity=-0.064 Sum_probs=19.9
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+-++|+|++++|||+|...|...
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999754
No 432
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.89 E-value=0.029 Score=45.44 Aligned_cols=21 Identities=10% Similarity=-0.054 Sum_probs=18.0
Q ss_pred eeeeccCCCchhHHHHHHhcC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~ 45 (115)
++|.||.|||||.|++.+|..
T Consensus 77 i~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 77 TEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHH
Confidence 348999999999999998853
No 433
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=93.87 E-value=0.033 Score=40.30 Aligned_cols=14 Identities=7% Similarity=-0.080 Sum_probs=12.2
Q ss_pred eeeeccCCCchhHH
Q psy7554 25 YLSCLPDSVCPHAH 38 (115)
Q Consensus 25 ~li~GpTasGKS~l 38 (115)
+++++|||||||..
T Consensus 65 ~li~a~TGsGKT~~ 78 (236)
T 2pl3_A 65 VLGAAKTGSGKTLA 78 (236)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEEeCCCCcHHHH
Confidence 56899999999975
No 434
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=93.86 E-value=0.03 Score=44.63 Aligned_cols=32 Identities=6% Similarity=-0.287 Sum_probs=20.3
Q ss_pred eeeeeccCCCchhHHHHHHhc---CCCceEeeccce
Q psy7554 24 SYLSCLPDSVCPHAHQVDLTD---GPDLFCRTYQVY 56 (115)
Q Consensus 24 ~~li~GpTasGKS~lai~LA~---~~~~eI~IsaDS 56 (115)
.++|+||||||||.+...+.. ..+..+ |-.|-
T Consensus 55 h~~i~G~tGsGKs~~~~~li~~~~~~g~~v-iv~Dp 89 (437)
T 1e9r_A 55 HLLVNGATGTGKSVLLRELAYTGLLRGDRM-VIVDP 89 (437)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHHTTCEE-EEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCcE-EEEeC
Confidence 467899999999987533332 234444 44454
No 435
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.84 E-value=0.019 Score=43.69 Aligned_cols=24 Identities=8% Similarity=-0.259 Sum_probs=21.3
Q ss_pred eeeeccCCCchhHHHHHHhcCCCc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPDL 48 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~~ 48 (115)
|++.|+.|||||+++..|++.++.
T Consensus 24 i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 24 ITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhh
Confidence 467999999999999999988755
No 436
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.83 E-value=0.047 Score=42.90 Aligned_cols=32 Identities=0% Similarity=-0.403 Sum_probs=23.1
Q ss_pred eeeccCCCchhHHHHHHhcC-----CCceEeeccceee
Q psy7554 26 LSCLPDSVCPHAHQVDLTDG-----PDLFCRTYQVYLM 58 (115)
Q Consensus 26 li~GpTasGKS~lai~LA~~-----~~~eI~IsaDSmQ 58 (115)
.|+|++|+|||+|...|+.. ....+ +..|-..
T Consensus 60 ~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v-~~~d~~~ 96 (341)
T 2p67_A 60 GVTGTPGAGKSTFLEAFGMLLIREGLKVAV-IAVDPSS 96 (341)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTTCCEEE-EEECCC-
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhcCCeEEE-EeecCCc
Confidence 47999999999999999743 33455 6666543
No 437
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=93.83 E-value=0.028 Score=40.10 Aligned_cols=14 Identities=7% Similarity=-0.035 Sum_probs=12.3
Q ss_pred eeeeccCCCchhHH
Q psy7554 25 YLSCLPDSVCPHAH 38 (115)
Q Consensus 25 ~li~GpTasGKS~l 38 (115)
+++.+|||||||..
T Consensus 54 ~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 54 VLAQAQSGTGKTGT 67 (224)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCcHHHH
Confidence 66899999999965
No 438
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.82 E-value=0.038 Score=39.60 Aligned_cols=23 Identities=13% Similarity=0.033 Sum_probs=20.2
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
+.++++|++++|||+|...|...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46889999999999999998754
No 439
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.81 E-value=0.012 Score=50.20 Aligned_cols=27 Identities=4% Similarity=-0.236 Sum_probs=22.0
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHhcCCC
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLTDGPD 47 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA~~~~ 47 (115)
+.+++ +|+|+.|||||+|+..||+.++
T Consensus 368 ~G~iI---~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 368 QGFTV---FFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp SCEEE---EEEESSCHHHHHHHHHHHHHHH
T ss_pred cceEE---EEECCCCChHHHHHHHHHHhhc
Confidence 44554 4899999999999999998764
No 440
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.79 E-value=0.039 Score=39.12 Aligned_cols=22 Identities=9% Similarity=0.046 Sum_probs=19.4
Q ss_pred eeeeeeccCCCchhHHHHHHhc
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~ 44 (115)
+-++++|++++|||+|...+..
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 4578999999999999988884
No 441
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.77 E-value=0.042 Score=38.49 Aligned_cols=25 Identities=8% Similarity=-0.253 Sum_probs=20.8
Q ss_pred eeeeeeccCCCchhHHHHHHhcCCC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGPD 47 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~~ 47 (115)
+-++++|+.+||||+|...+..++.
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4578899999999999887777653
No 442
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.74 E-value=0.021 Score=40.39 Aligned_cols=30 Identities=10% Similarity=-0.094 Sum_probs=23.2
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~ 46 (115)
.|..--..++++|++++|||+|...|....
T Consensus 24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCCCCSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 333334567889999999999999998764
No 443
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.74 E-value=0.032 Score=43.28 Aligned_cols=24 Identities=4% Similarity=-0.128 Sum_probs=19.9
Q ss_pred eEeeeeeeccCCCchhHHHHHHhc
Q psy7554 21 VYLSYLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 21 ~~~~~li~GpTasGKS~lai~LA~ 44 (115)
+=+.+.|+||+|+|||+|...|+.
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CCEEEEEECCCCCCHHHHHHHHhC
Confidence 446678999999999999998774
No 444
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=93.73 E-value=0.018 Score=39.92 Aligned_cols=24 Identities=13% Similarity=-0.151 Sum_probs=5.1
Q ss_pred EeeeeeeccCCCchhHHHHHHhcC
Q psy7554 22 YLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 22 ~~~~li~GpTasGKS~lai~LA~~ 45 (115)
-+.++++|++++|||+|...|...
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEC-----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356889999999999999888765
No 445
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=93.72 E-value=0.034 Score=41.98 Aligned_cols=16 Identities=6% Similarity=-0.101 Sum_probs=12.7
Q ss_pred eeeeccCCCchhHHHH
Q psy7554 25 YLSCLPDSVCPHAHQV 40 (115)
Q Consensus 25 ~li~GpTasGKS~lai 40 (115)
+++.+|||||||..+.
T Consensus 47 ~lv~a~TGsGKT~~~~ 62 (395)
T 3pey_A 47 MIAQSQSGTGKTAAFS 62 (395)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCCCcHHHHHH
Confidence 4579999999997543
No 446
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.71 E-value=0.038 Score=38.98 Aligned_cols=22 Identities=5% Similarity=-0.156 Sum_probs=19.4
Q ss_pred eeeeeeccCCCchhHHHHHHhc
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~ 44 (115)
+-++|+|++++|||+|..++..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4578899999999999999984
No 447
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=93.71 E-value=0.037 Score=39.49 Aligned_cols=17 Identities=18% Similarity=-0.083 Sum_probs=13.6
Q ss_pred eeeeccCCCchhHHHHH
Q psy7554 25 YLSCLPDSVCPHAHQVD 41 (115)
Q Consensus 25 ~li~GpTasGKS~lai~ 41 (115)
+++++|||+|||..++-
T Consensus 54 ~li~~~TGsGKT~~~~~ 70 (220)
T 1t6n_A 54 VLCQAKSGMGKTAVFVL 70 (220)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCCCchhhhhhH
Confidence 66899999999975443
No 448
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=93.68 E-value=0.044 Score=39.24 Aligned_cols=24 Identities=8% Similarity=-0.043 Sum_probs=20.7
Q ss_pred EeeeeeeccCCCchhHHHHHHhcC
Q psy7554 22 YLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 22 ~~~~li~GpTasGKS~lai~LA~~ 45 (115)
.+-++|+|++++|||+|...|...
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 356889999999999999999854
No 449
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=93.67 E-value=0.033 Score=43.93 Aligned_cols=34 Identities=6% Similarity=-0.057 Sum_probs=25.4
Q ss_pred eeeccCC-CceeEeeeeeeccCCCchhHHHHHHhcCC
Q psy7554 11 VNLLTGT-PDQVYLSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 11 ~~~~~~~-~~~~~~~~li~GpTasGKS~lai~LA~~~ 46 (115)
.+.|.|. |+. +.+++.||.|+|||.+|..||..+
T Consensus 94 ~~~l~~~~~~~--n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 94 LGWATKKFGKR--NTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHTTCSTTC--CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHhCCCCCC--cEEEEECCCCCCHHHHHHHHHhhh
Confidence 3556776 433 234579999999999999999853
No 450
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.66 E-value=0.039 Score=42.88 Aligned_cols=36 Identities=3% Similarity=-0.250 Sum_probs=24.5
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHhcCC---CceE-eeccce
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC-RTYQVY 56 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI-~IsaDS 56 (115)
+.++.. ++|+.|+|||+++..||..+ ++.+ .+.+|-
T Consensus 97 ~~~~i~---i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 97 DRNLWF---LVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (295)
T ss_dssp SSEEEE---EECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CCeEEE---EECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence 455554 67999999999999888432 3332 166664
No 451
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.60 E-value=0.047 Score=40.93 Aligned_cols=24 Identities=13% Similarity=0.019 Sum_probs=20.5
Q ss_pred eeeeeeccCCCchhHHHHHHhcCC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~ 46 (115)
+.++++|++|+|||+|...|....
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999998543
No 452
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.59 E-value=0.056 Score=38.19 Aligned_cols=24 Identities=13% Similarity=0.044 Sum_probs=20.6
Q ss_pred EeeeeeeccCCCchhHHHHHHhcC
Q psy7554 22 YLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 22 ~~~~li~GpTasGKS~lai~LA~~ 45 (115)
.+-++|+|+.++|||+|...|...
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 356889999999999999999754
No 453
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=93.59 E-value=0.038 Score=43.28 Aligned_cols=17 Identities=6% Similarity=-0.144 Sum_probs=14.1
Q ss_pred eeeccCCCchhHHHHHH
Q psy7554 26 LSCLPDSVCPHAHQVDL 42 (115)
Q Consensus 26 li~GpTasGKS~lai~L 42 (115)
+|+||+|+|||.+.-.+
T Consensus 27 ~i~G~NGsGKS~lleAi 43 (339)
T 3qkt_A 27 LIIGQNGSGKSSLLDAI 43 (339)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 38999999999995554
No 454
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.50 E-value=0.053 Score=41.73 Aligned_cols=29 Identities=3% Similarity=-0.172 Sum_probs=22.2
Q ss_pred ceeEeeeeeeccCCCchhHHHHHHhcCC--CceE
Q psy7554 19 DQVYLSYLSCLPDSVCPHAHQVDLTDGP--DLFC 50 (115)
Q Consensus 19 ~~~~~~~li~GpTasGKS~lai~LA~~~--~~eI 50 (115)
.+++. |.||.|||||+|..-|+.-. .|+|
T Consensus 30 Ge~~~---i~G~NGsGKSTLlk~l~Gl~p~~G~I 60 (263)
T 2pjz_A 30 GEKVI---ILGPNGSGKTTLLRAISGLLPYSGNI 60 (263)
T ss_dssp SSEEE---EECCTTSSHHHHHHHHTTSSCCEEEE
T ss_pred CEEEE---EECCCCCCHHHHHHHHhCCCCCCcEE
Confidence 55655 89999999999998888543 3455
No 455
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.49 E-value=0.046 Score=44.26 Aligned_cols=30 Identities=3% Similarity=-0.274 Sum_probs=23.2
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
+.+++. |.||+|||||+|..-||--. .|+|
T Consensus 40 ~Ge~~~---llGpnGsGKSTLLr~iaGl~~p~~G~I 72 (355)
T 1z47_A 40 EGEMVG---LLGPSGSGKTTILRLIAGLERPTKGDV 72 (355)
T ss_dssp TTCEEE---EECSTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred CCCEEE---EECCCCCcHHHHHHHHhCCCCCCccEE
Confidence 455655 89999999999999888543 3666
No 456
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.47 E-value=0.043 Score=44.65 Aligned_cols=32 Identities=6% Similarity=-0.173 Sum_probs=24.7
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
=.+.+++. |+||.|||||+|..-||--. .|+|
T Consensus 27 i~~Ge~~~---llGpsGsGKSTLLr~iaGl~~p~~G~I 61 (359)
T 3fvq_A 27 LDPGEILF---IIGASGCGKTTLLRCLAGFEQPDSGEI 61 (359)
T ss_dssp ECTTCEEE---EEESTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred EcCCCEEE---EECCCCchHHHHHHHHhcCCCCCCcEE
Confidence 34566666 89999999999999998543 3666
No 457
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.47 E-value=0.043 Score=45.51 Aligned_cols=23 Identities=4% Similarity=-0.028 Sum_probs=19.9
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHH
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDL 42 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~L 42 (115)
.+.++++ |+||+|||||.|+..+
T Consensus 37 ~~Ge~~~---l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 37 PIGRSTL---VSGTSGTGKTLFSIQF 59 (525)
T ss_dssp ETTSEEE---EEESTTSSHHHHHHHH
T ss_pred CCCeEEE---EEcCCCCCHHHHHHHH
Confidence 4677877 9999999999999884
No 458
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.46 E-value=0.063 Score=41.79 Aligned_cols=20 Identities=5% Similarity=-0.243 Sum_probs=17.7
Q ss_pred eeeccCCCchhHHHHHHhcC
Q psy7554 26 LSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 26 li~GpTasGKS~lai~LA~~ 45 (115)
+|+|+.|||||+|...|+..
T Consensus 8 ~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 8 LLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEESSSSSCHHHHHHHHHS
T ss_pred EEEecCCCCHHHHHHHHHhh
Confidence 48999999999999888854
No 459
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.46 E-value=0.048 Score=38.32 Aligned_cols=24 Identities=8% Similarity=0.117 Sum_probs=20.4
Q ss_pred EeeeeeeccCCCchhHHHHHHhcC
Q psy7554 22 YLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 22 ~~~~li~GpTasGKS~lai~LA~~ 45 (115)
.+-++++|+.++|||+|...+...
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 356789999999999999999854
No 460
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.43 E-value=0.023 Score=42.53 Aligned_cols=23 Identities=0% Similarity=-0.143 Sum_probs=20.5
Q ss_pred eeeeccCCCchhHHHHHHhcCCC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDGPD 47 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~~~ 47 (115)
|++.|+.|||||+++-.|++.+.
T Consensus 6 i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 6 IVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 56799999999999999998774
No 461
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.41 E-value=0.041 Score=45.80 Aligned_cols=36 Identities=3% Similarity=-0.254 Sum_probs=26.3
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---Cc-e-Eeeccc
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DL-F-CRTYQV 55 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~-e-I~IsaD 55 (115)
.+.+++. |+||+|||||+|..-|+.-. .| . |.++.|
T Consensus 136 ~~Ge~v~---IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~ 176 (460)
T 2npi_A 136 FEGPRVV---IVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD 176 (460)
T ss_dssp SSCCCEE---EEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC
T ss_pred CCCCEEE---EECCCCCCHHHHHHHHhCcccccCCceeEEEcCC
Confidence 3566766 89999999999998888654 45 4 545543
No 462
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.41 E-value=0.059 Score=42.73 Aligned_cols=20 Identities=5% Similarity=-0.197 Sum_probs=17.9
Q ss_pred eeeeccCCCchhHHHHHHhc
Q psy7554 25 YLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~ 44 (115)
+.|+|++|||||+|-..|+.
T Consensus 77 v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 77 VGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 55899999999999999885
No 463
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=93.35 E-value=0.03 Score=41.95 Aligned_cols=15 Identities=7% Similarity=-0.093 Sum_probs=12.5
Q ss_pred eeeeccCCCchhHHH
Q psy7554 25 YLSCLPDSVCPHAHQ 39 (115)
Q Consensus 25 ~li~GpTasGKS~la 39 (115)
+++++|||||||..+
T Consensus 94 ~lv~a~TGsGKT~~~ 108 (262)
T 3ly5_A 94 LLAAAKTGSGKTLAF 108 (262)
T ss_dssp CEECCCTTSCHHHHH
T ss_pred EEEEccCCCCchHHH
Confidence 568999999999653
No 464
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.34 E-value=0.048 Score=45.23 Aligned_cols=24 Identities=8% Similarity=0.051 Sum_probs=19.2
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHhc
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA~ 44 (115)
+.++++ |.||+|||||.|+..+|.
T Consensus 280 ~G~i~~---i~G~~GsGKSTLl~~l~g 303 (525)
T 1tf7_A 280 KDSIIL---ATGATGTGKTLLVSRFVE 303 (525)
T ss_dssp SSCEEE---EEECTTSSHHHHHHHHHH
T ss_pred CCcEEE---EEeCCCCCHHHHHHHHHH
Confidence 344554 999999999999988873
No 465
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.32 E-value=0.032 Score=45.62 Aligned_cols=26 Identities=8% Similarity=0.171 Sum_probs=20.6
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhc
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~ 44 (115)
|-|.-+ ++|.||.|||||.|++.++.
T Consensus 25 Gl~~Gi---teI~G~pGsGKTtL~Lq~~~ 50 (333)
T 3io5_A 25 GMQSGL---LILAGPSKSFKSNFGLTMVS 50 (333)
T ss_dssp CBCSEE---EEEEESSSSSHHHHHHHHHH
T ss_pred CCcCCe---EEEECCCCCCHHHHHHHHHH
Confidence 445553 57999999999999988764
No 466
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.31 E-value=0.049 Score=44.69 Aligned_cols=31 Identities=3% Similarity=-0.200 Sum_probs=24.6
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+.+++- |+||+|||||+|..-||--. .|+|
T Consensus 27 ~~Ge~~~---llGpsGsGKSTLLr~iaGl~~p~~G~I 60 (381)
T 3rlf_A 27 HEGEFVV---FVGPSGCGKSTLLRMIAGLETITSGDL 60 (381)
T ss_dssp CTTCEEE---EECCTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred CCCCEEE---EEcCCCchHHHHHHHHHcCCCCCCeEE
Confidence 4667766 89999999999999998543 3666
No 467
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.30 E-value=0.049 Score=44.51 Aligned_cols=32 Identities=6% Similarity=-0.216 Sum_probs=24.6
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
=.+.+++- |+||.|||||+|..-|+.-. .|+|
T Consensus 51 i~~Gei~~---IiGpnGaGKSTLlr~i~GL~~p~~G~I 85 (366)
T 3tui_C 51 VPAGQIYG---VIGASGAGKSTLIRCVNLLERPTEGSV 85 (366)
T ss_dssp ECTTCEEE---EECCTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred EcCCCEEE---EEcCCCchHHHHHHHHhcCCCCCceEE
Confidence 35667777 89999999999988887543 3566
No 468
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.30 E-value=0.068 Score=44.35 Aligned_cols=35 Identities=3% Similarity=-0.172 Sum_probs=24.5
Q ss_pred CceeEeeeeeeccCCCchhHHHHHHhcCC---Cc--eEeeccce
Q psy7554 18 PDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DL--FCRTYQVY 56 (115)
Q Consensus 18 ~~~~~~~~li~GpTasGKS~lai~LA~~~---~~--eI~IsaDS 56 (115)
+.+|+. ++||+|||||+++..||..+ ++ .+ +.+|-
T Consensus 97 ~~~vi~---i~G~~GsGKTT~~~~LA~~l~~~g~~Vll-vd~D~ 136 (425)
T 2ffh_A 97 DRNLWF---LVGLQGSGKTTTAAKLALYYKGKGRRPLL-VAADT 136 (425)
T ss_dssp SSEEEE---EECCTTSSHHHHHHHHHHHHHTTTCCEEE-EECCS
T ss_pred CCeEEE---EECCCCCCHHHHHHHHHHHHHHcCCeEEE-eeccc
Confidence 445544 68999999999999988432 33 34 67773
No 469
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=93.23 E-value=0.027 Score=46.60 Aligned_cols=21 Identities=5% Similarity=-0.040 Sum_probs=17.1
Q ss_pred eeeeccCCCchhHHHHHHhcC
Q psy7554 25 YLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA~~ 45 (115)
+++++|||||||..++.++.+
T Consensus 201 ~ll~~~TGsGKT~~~~~~~~~ 221 (590)
T 3h1t_A 201 SLITMATGTGKTVVAFQISWK 221 (590)
T ss_dssp EEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEecCCCChHHHHHHHHHH
Confidence 457999999999888877743
No 470
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.23 E-value=0.057 Score=38.72 Aligned_cols=24 Identities=8% Similarity=-0.190 Sum_probs=20.9
Q ss_pred EeeeeeeccCCCchhHHHHHHhcC
Q psy7554 22 YLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 22 ~~~~li~GpTasGKS~lai~LA~~ 45 (115)
-+.++++|+.++|||+|..+|...
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999999754
No 471
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=93.22 E-value=0.047 Score=47.64 Aligned_cols=19 Identities=11% Similarity=0.090 Sum_probs=15.6
Q ss_pred eeeeccCCCchhHHHHHHh
Q psy7554 25 YLSCLPDSVCPHAHQVDLT 43 (115)
Q Consensus 25 ~li~GpTasGKS~lai~LA 43 (115)
++++||||||||..++...
T Consensus 158 vlv~apTGSGKT~~al~~l 176 (677)
T 3rc3_A 158 IFHSGPTNSGKTYHAIQKY 176 (677)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4589999999999877654
No 472
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.21 E-value=0.055 Score=43.93 Aligned_cols=31 Identities=3% Similarity=-0.154 Sum_probs=23.7
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+.+++. |.||.|||||+|..-||--. .|+|
T Consensus 27 ~~Ge~~~---llGpnGsGKSTLLr~iaGl~~p~~G~I 60 (372)
T 1g29_1 27 KDGEFMI---LLGPSGCGKTTTLRMIAGLEEPSRGQI 60 (372)
T ss_dssp ETTCEEE---EECSTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred cCCCEEE---EECCCCcHHHHHHHHHHcCCCCCccEE
Confidence 3556665 89999999999998888543 3666
No 473
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=93.21 E-value=0.046 Score=39.96 Aligned_cols=15 Identities=0% Similarity=-0.082 Sum_probs=12.6
Q ss_pred eeeeeccCCCchhHH
Q psy7554 24 SYLSCLPDSVCPHAH 38 (115)
Q Consensus 24 ~~li~GpTasGKS~l 38 (115)
++++.+|||||||..
T Consensus 68 ~~l~~apTGsGKT~~ 82 (242)
T 3fe2_A 68 DMVGVAQTGSGKTLS 82 (242)
T ss_dssp CEEEEECTTSCHHHH
T ss_pred CEEEECCCcCHHHHH
Confidence 466799999999965
No 474
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.20 E-value=0.044 Score=42.52 Aligned_cols=18 Identities=6% Similarity=-0.103 Sum_probs=15.2
Q ss_pred eeeccCCCchhHHHHHHh
Q psy7554 26 LSCLPDSVCPHAHQVDLT 43 (115)
Q Consensus 26 li~GpTasGKS~lai~LA 43 (115)
+|+||+|+|||.|.-.|.
T Consensus 28 ~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 28 AIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEECCTTTCSTHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHH
Confidence 489999999999966665
No 475
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.18 E-value=0.06 Score=40.25 Aligned_cols=24 Identities=13% Similarity=0.015 Sum_probs=20.5
Q ss_pred eeeeeeccCCCchhHHHHHHhcCC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDGP 46 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~~ 46 (115)
+.++++|.+++|||+|...|...-
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999998643
No 476
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=93.15 E-value=0.032 Score=40.81 Aligned_cols=14 Identities=7% Similarity=-0.019 Sum_probs=12.2
Q ss_pred eeeeccCCCchhHH
Q psy7554 25 YLSCLPDSVCPHAH 38 (115)
Q Consensus 25 ~li~GpTasGKS~l 38 (115)
+++++|||||||..
T Consensus 70 ~li~apTGsGKT~~ 83 (237)
T 3bor_A 70 VIAQAQSGTGKTAT 83 (237)
T ss_dssp EEECCCSSHHHHHH
T ss_pred EEEECCCCCcHHHH
Confidence 56899999999965
No 477
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.15 E-value=0.051 Score=44.48 Aligned_cols=32 Identities=6% Similarity=-0.305 Sum_probs=24.2
Q ss_pred CCCceeEeeeeeeccCCCchhHHHHHHhcCC--CceE
Q psy7554 16 GTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP--DLFC 50 (115)
Q Consensus 16 ~~~~~~~~~~li~GpTasGKS~lai~LA~~~--~~eI 50 (115)
=.+.+++. |+||+|||||+|..-||.-. .|+|
T Consensus 44 i~~Ge~~~---llGpsGsGKSTLLr~iaGl~~~~G~I 77 (390)
T 3gd7_A 44 ISPGQRVG---LLGRTGSGKSTLLSAFLRLLNTEGEI 77 (390)
T ss_dssp ECTTCEEE---EEESTTSSHHHHHHHHHTCSEEEEEE
T ss_pred EcCCCEEE---EECCCCChHHHHHHHHhCCCCCCeEE
Confidence 34566666 89999999999998888432 3555
No 478
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=93.12 E-value=0.055 Score=40.74 Aligned_cols=21 Identities=5% Similarity=-0.042 Sum_probs=18.4
Q ss_pred eeeeeeccCCCchhHHHHHHh
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLT 43 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA 43 (115)
+.++++|.+|+|||+|...|.
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~ 29 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLF 29 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 467899999999999998875
No 479
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.07 E-value=0.057 Score=43.80 Aligned_cols=31 Identities=3% Similarity=-0.210 Sum_probs=24.0
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+.+++. |.||.|||||+|..-||--. .|+|
T Consensus 27 ~~Ge~~~---llGpnGsGKSTLLr~iaGl~~p~~G~I 60 (362)
T 2it1_A 27 KDGEFMA---LLGPSGSGKSTLLYTIAGIYKPTSGKI 60 (362)
T ss_dssp CTTCEEE---EECCTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred CCCCEEE---EECCCCchHHHHHHHHhcCCCCCceEE
Confidence 4556665 89999999999999888543 3666
No 480
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=93.04 E-value=0.053 Score=39.67 Aligned_cols=14 Identities=14% Similarity=0.273 Sum_probs=12.1
Q ss_pred eeeeccCCCchhHH
Q psy7554 25 YLSCLPDSVCPHAH 38 (115)
Q Consensus 25 ~li~GpTasGKS~l 38 (115)
+++++|||||||..
T Consensus 63 ~l~~a~TGsGKT~~ 76 (253)
T 1wrb_A 63 IMACAQTGSGKTAA 76 (253)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCChHHHH
Confidence 56799999999964
No 481
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.04 E-value=0.049 Score=44.92 Aligned_cols=27 Identities=4% Similarity=-0.143 Sum_probs=21.6
Q ss_pred ceeEeeeeeeccCCCchhHHHHHHhcC
Q psy7554 19 DQVYLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 19 ~~~~~~~li~GpTasGKS~lai~LA~~ 45 (115)
+.+=+.+.|+||+|+|||+|...|+..
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTC
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHhCC
Confidence 344456789999999999999999854
No 482
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.03 E-value=0.058 Score=43.69 Aligned_cols=31 Identities=6% Similarity=-0.187 Sum_probs=23.9
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+.+++. |.||.|||||+|..-||--. .|+|
T Consensus 27 ~~Ge~~~---llGpnGsGKSTLLr~iaGl~~p~~G~I 60 (359)
T 2yyz_A 27 KDGEFVA---LLGPSGCGKTTTLLMLAGIYKPTSGEI 60 (359)
T ss_dssp CTTCEEE---EECSTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred cCCCEEE---EEcCCCchHHHHHHHHHCCCCCCccEE
Confidence 4556665 89999999999999888543 3666
No 483
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=93.02 E-value=0.032 Score=41.90 Aligned_cols=23 Identities=9% Similarity=-0.045 Sum_probs=19.2
Q ss_pred eeeeecc-CCCchhHHHHHHhcCC
Q psy7554 24 SYLSCLP-DSVCPHAHQVDLTDGP 46 (115)
Q Consensus 24 ~~li~Gp-TasGKS~lai~LA~~~ 46 (115)
+++|+|+ |++|||.++..|++.+
T Consensus 6 ~i~Itgt~t~vGKT~vt~~L~~~l 29 (228)
T 3of5_A 6 KFFIIGTDTEVGKTYISTKLIEVC 29 (228)
T ss_dssp EEEEEESSSSSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 4678999 9999999998888654
No 484
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=93.01 E-value=0.052 Score=41.64 Aligned_cols=16 Identities=19% Similarity=0.054 Sum_probs=13.0
Q ss_pred eeeeccCCCchhHHHH
Q psy7554 25 YLSCLPDSVCPHAHQV 40 (115)
Q Consensus 25 ~li~GpTasGKS~lai 40 (115)
+++.+|||||||..++
T Consensus 61 ~li~a~TGsGKT~~~~ 76 (400)
T 1s2m_A 61 ILARAKNGTGKTAAFV 76 (400)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCCcHHHHHHH
Confidence 5679999999996543
No 485
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=93.00 E-value=0.045 Score=39.75 Aligned_cols=14 Identities=14% Similarity=0.147 Sum_probs=12.0
Q ss_pred eeeeccCCCchhHH
Q psy7554 25 YLSCLPDSVCPHAH 38 (115)
Q Consensus 25 ~li~GpTasGKS~l 38 (115)
+++.+|||||||..
T Consensus 69 ~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 69 LLASAPTGSGKTLA 82 (245)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEECCCCCcHHHH
Confidence 46799999999965
No 486
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=92.98 E-value=0.03 Score=39.54 Aligned_cols=24 Identities=13% Similarity=-0.074 Sum_probs=20.2
Q ss_pred EeeeeeeccCCCchhHHHHHHhcC
Q psy7554 22 YLSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 22 ~~~~li~GpTasGKS~lai~LA~~ 45 (115)
-+.++|+|++++|||+|...|...
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTTC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999988843
No 487
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=92.98 E-value=0.04 Score=39.49 Aligned_cols=14 Identities=0% Similarity=-0.159 Sum_probs=12.2
Q ss_pred eeeeccCCCchhHH
Q psy7554 25 YLSCLPDSVCPHAH 38 (115)
Q Consensus 25 ~li~GpTasGKS~l 38 (115)
+++++|||||||..
T Consensus 44 ~lv~a~TGsGKT~~ 57 (219)
T 1q0u_A 44 MVGQSQTGTGKTHA 57 (219)
T ss_dssp EEEECCSSHHHHHH
T ss_pred EEEECCCCChHHHH
Confidence 56899999999975
No 488
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=92.95 E-value=0.043 Score=42.83 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=13.4
Q ss_pred eeeeeccCCCchhHHHH
Q psy7554 24 SYLSCLPDSVCPHAHQV 40 (115)
Q Consensus 24 ~~li~GpTasGKS~lai 40 (115)
.+++++|||||||..++
T Consensus 38 ~~lv~apTGsGKT~~~l 54 (414)
T 3oiy_A 38 SFTMVAPTGVGKTTFGM 54 (414)
T ss_dssp CEECCSCSSSSHHHHHH
T ss_pred CEEEEeCCCCCHHHHHH
Confidence 35689999999997443
No 489
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=92.93 E-value=0.054 Score=41.36 Aligned_cols=15 Identities=7% Similarity=-0.081 Sum_probs=12.3
Q ss_pred eeeeccCCCchhHHH
Q psy7554 25 YLSCLPDSVCPHAHQ 39 (115)
Q Consensus 25 ~li~GpTasGKS~la 39 (115)
+++.+|||||||..+
T Consensus 67 ~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 67 LIAQSQSGTGKTAAF 81 (412)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCchHHHHH
Confidence 457999999999764
No 490
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=92.90 E-value=0.074 Score=39.02 Aligned_cols=23 Identities=4% Similarity=-0.197 Sum_probs=20.3
Q ss_pred eeeeeeccCCCchhHHHHHHhcC
Q psy7554 23 LSYLSCLPDSVCPHAHQVDLTDG 45 (115)
Q Consensus 23 ~~~li~GpTasGKS~lai~LA~~ 45 (115)
.-++|+|.+++|||+|..++...
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56889999999999999999853
No 491
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.89 E-value=0.11 Score=40.93 Aligned_cols=25 Identities=8% Similarity=-0.280 Sum_probs=20.0
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhc
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTD 44 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~ 44 (115)
.+.+++. |+||+|||||+|...|+.
T Consensus 53 ~~g~~v~---i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 53 GRAIRVG---ITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CCSEEEE---EECCTTSCHHHHHHHHHH
T ss_pred CCCeEEE---EECCCCCCHHHHHHHHHH
Confidence 3445555 899999999999988874
No 492
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=92.88 E-value=0.042 Score=46.29 Aligned_cols=33 Identities=0% Similarity=-0.415 Sum_probs=24.6
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceEee
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFCRT 52 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI~I 52 (115)
.|.+++. |+||+|||||+|..-|+.-. .|+|.+
T Consensus 365 ~~G~~~~---ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 400 (578)
T 4a82_A 365 EKGETVA---FVGMSGGGKSTLINLIPRFYDVTSGQILI 400 (578)
T ss_dssp CTTCEEE---EECSTTSSHHHHHTTTTTSSCCSEEEEEE
T ss_pred CCCCEEE---EECCCCChHHHHHHHHhcCCCCCCcEEEE
Confidence 4566665 89999999999988887654 356633
No 493
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.87 E-value=0.063 Score=43.69 Aligned_cols=31 Identities=3% Similarity=-0.137 Sum_probs=23.9
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+.+++. |.||.|||||+|..-||--. .|+|
T Consensus 35 ~~Ge~~~---llGpnGsGKSTLLr~iaGl~~p~~G~I 68 (372)
T 1v43_A 35 KDGEFLV---LLGPSGCGKTTTLRMIAGLEEPTEGRI 68 (372)
T ss_dssp CTTCEEE---EECCTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred CCCCEEE---EECCCCChHHHHHHHHHcCCCCCceEE
Confidence 4556665 89999999999999888543 3666
No 494
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=92.85 E-value=0.052 Score=46.03 Aligned_cols=15 Identities=13% Similarity=-0.002 Sum_probs=13.0
Q ss_pred eeeeccCCCchhHHH
Q psy7554 25 YLSCLPDSVCPHAHQ 39 (115)
Q Consensus 25 ~li~GpTasGKS~la 39 (115)
++|+||||||||..+
T Consensus 49 ~lv~apTGsGKT~~~ 63 (715)
T 2va8_A 49 LLLTSPTGSGKTLIA 63 (715)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEEcCCCCcHHHHH
Confidence 458999999999876
No 495
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=92.84 E-value=0.054 Score=45.69 Aligned_cols=33 Identities=9% Similarity=-0.224 Sum_probs=24.5
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceEee
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFCRT 52 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI~I 52 (115)
.+.+++. |+||+|||||+|..-|+.-. .|+|.+
T Consensus 368 ~~G~~~~---ivG~sGsGKSTLl~~l~g~~~p~~G~i~~ 403 (595)
T 2yl4_A 368 PSGSVTA---LVGPSGSGKSTVLSLLLRLYDPASGTISL 403 (595)
T ss_dssp CTTCEEE---EECCTTSSSTHHHHHHTTSSCCSEEEEEE
T ss_pred cCCCEEE---EECCCCCCHHHHHHHHhcCcCCCCcEEEE
Confidence 3455555 89999999999999888654 366633
No 496
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.82 E-value=0.065 Score=49.67 Aligned_cols=37 Identities=11% Similarity=-0.167 Sum_probs=0.0
Q ss_pred ccCCCceeEeeeeeeccCCCchhHHHHHHhcCC---CceEeec
Q psy7554 14 LTGTPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFCRTY 53 (115)
Q Consensus 14 ~~~~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI~Is 53 (115)
++=.|.|.+- |+||||||||+|..-|.+-. .|.|.|+
T Consensus 1100 l~I~~Ge~va---IVG~SGsGKSTL~~lL~rl~~p~~G~I~iD 1139 (1321)
T 4f4c_A 1100 FSVEPGQTLA---LVGPSGCGKSTVVALLERFYDTLGGEIFID 1139 (1321)
T ss_dssp EEECTTCEEE---EECSTTSSTTSHHHHHTTSSCCSSSEEEET
T ss_pred EEECCCCEEE---EECCCCChHHHHHHHHhcCccCCCCEEEEC
No 497
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=92.78 E-value=0.034 Score=44.93 Aligned_cols=16 Identities=6% Similarity=-0.188 Sum_probs=13.2
Q ss_pred eeeeeccCCCchhHHH
Q psy7554 24 SYLSCLPDSVCPHAHQ 39 (115)
Q Consensus 24 ~~li~GpTasGKS~la 39 (115)
.+|++||||||||..+
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 3568999999999764
No 498
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.72 E-value=0.049 Score=43.88 Aligned_cols=31 Identities=3% Similarity=-0.152 Sum_probs=24.0
Q ss_pred CCceeEeeeeeeccCCCchhHHHHHHhcCC---CceE
Q psy7554 17 TPDQVYLSYLSCLPDSVCPHAHQVDLTDGP---DLFC 50 (115)
Q Consensus 17 ~~~~~~~~~li~GpTasGKS~lai~LA~~~---~~eI 50 (115)
.+.+++. |.||+|||||+|..-||--. .|+|
T Consensus 24 ~~Ge~~~---llGpnGsGKSTLLr~iaGl~~p~~G~I 57 (348)
T 3d31_A 24 ESGEYFV---ILGPTGAGKTLFLELIAGFHVPDSGRI 57 (348)
T ss_dssp CTTCEEE---EECCCTHHHHHHHHHHHTSSCCSEEEE
T ss_pred cCCCEEE---EECCCCccHHHHHHHHHcCCCCCCcEE
Confidence 4556665 89999999999999998543 3666
No 499
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=92.64 E-value=0.064 Score=39.80 Aligned_cols=15 Identities=0% Similarity=-0.155 Sum_probs=12.5
Q ss_pred eeeeccCCCchhHHH
Q psy7554 25 YLSCLPDSVCPHAHQ 39 (115)
Q Consensus 25 ~li~GpTasGKS~la 39 (115)
+++++|||||||..+
T Consensus 83 ~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 83 IIGLAETGSGKTGAF 97 (249)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEEcCCCCCchhHh
Confidence 567999999999653
No 500
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=92.55 E-value=0.025 Score=42.97 Aligned_cols=18 Identities=0% Similarity=-0.151 Sum_probs=15.4
Q ss_pred eeeccCCCchhHHHHHHh
Q psy7554 26 LSCLPDSVCPHAHQVDLT 43 (115)
Q Consensus 26 li~GpTasGKS~lai~LA 43 (115)
.|+||+|||||+|.-.|+
T Consensus 31 ~i~GpnGsGKSTll~~i~ 48 (227)
T 1qhl_A 31 TLSGGNGAGKSTTMAAFV 48 (227)
T ss_dssp HHHSCCSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 489999999999976666
Done!