RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7554
         (115 letters)



>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 25.5 bits (55), Expect = 2.2
 Identities = 13/100 (13%), Positives = 27/100 (27%), Gaps = 6/100 (6%)

Query: 9   YQVNLLTGTPDQVY--LSYLSCLPDSVCPHAHQVDLTDGPDLFCRTYQVYLMVYKGLDVI 66
               L     +  Y  L  +  L  S   H       +      +T +   +  + +D++
Sbjct: 326 LGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLL 385

Query: 67  TNKVTPEEAEGIPHHLLDFLDPNTRFTVVDYRNRALKHTG 106
                   A+ I   +L +L           R   +    
Sbjct: 386 YAMCDRSNAQQIVAEMLSYL----ETADYSIREEIVLKVA 421


>d1a6ca1 b.121.4.2 (A:1-176) Nepovirus capsid protein {TRSV (Tobacco
           ringspot virus) [TaxId: 12282]}
          Length = 176

 Score = 25.2 bits (55), Expect = 2.2
 Identities = 7/36 (19%), Positives = 13/36 (36%)

Query: 62  GLDVITNKVTPEEAEGIPHHLLDFLDPNTRFTVVDY 97
            L  + N+  P E   +P  +    D +      +Y
Sbjct: 85  DLPALGNECPPSEMFELPTKVFMLKDADVHEWQFNY 120


>d1x7fa1 b.62.1.2 (A:245-361) Outer surface protein, C-terminal
           domain {Bacillus cereus [TaxId: 1396]}
          Length = 117

 Score = 23.9 bits (52), Expect = 3.9
 Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 5/28 (17%)

Query: 69  KVTPEEAEGIPHHLLDFLDPNTRFTVVD 96
            +  EE       LLD++   T+FT V+
Sbjct: 95  TIAEEE-----LFLLDYVGAWTQFTCVE 117


>d2bdra1 b.82.1.14 (A:1-166) Ureidoglycolate hydrolase AllA
           {Pseudomonas putida [TaxId: 303]}
          Length = 166

 Score = 23.4 bits (50), Expect = 6.8
 Identities = 7/22 (31%), Positives = 11/22 (50%)

Query: 75  AEGIPHHLLDFLDPNTRFTVVD 96
             G+ HH +  ++    F VVD
Sbjct: 121 HRGVWHHPVLTIEKRDDFLVVD 142


>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7,
           HAUSP) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 347

 Score = 23.5 bits (49), Expect = 7.6
 Identities = 9/49 (18%), Positives = 16/49 (32%)

Query: 44  DGPDLFCRTYQVYLMVYKGLDVITNKVTPEEAEGIPHHLLDFLDPNTRF 92
           D           Y++VY     ++  +       IP  L++ L    R 
Sbjct: 295 DDDLSVRHCTNAYMLVYIRESKLSEVLQAVTDHDIPQQLVERLQEEKRI 343


>d2dw4a1 a.4.1.18 (A:172-273) Lysine-specific histone demethylase 1,
           LSD1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 102

 Score = 22.8 bits (49), Expect = 9.9
 Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 68  NKVTPEEAEGIPHHLLDFLDPNTRFTVVDYRNRALK 103
           +++T +EA   P  +       T+   +  RNR L+
Sbjct: 15  DRMTSQEAACFPDIISG--PQQTQKVFLFIRNRTLQ 48


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.138    0.426 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 449,154
Number of extensions: 19572
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 7
Length of query: 115
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 42
Effective length of database: 1,405,306
Effective search space: 59022852
Effective search space used: 59022852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.4 bits)