BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7555
(322 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 144 bits (363), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 133/226 (58%), Gaps = 11/226 (4%)
Query: 51 SGCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDP-LKTTRNRSRLWILFLWLYGSF 109
+ C++YGFIGG+ G +SI T+A I++DRY V+ P+ K + R+ + I+F+WL+
Sbjct: 106 AACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVL 165
Query: 110 FASLPLVSSKFRYVPEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYVRIC 169
+A P+ Y EG L +CSFDY++ D T+ IL F + P II FCY I
Sbjct: 166 WAIGPIFGWG-AYTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIV 224
Query: 170 MIVIK-----SGMSASRHAAEQKKR----NIEIRLCIVAMGVIGLWFISWTPYATIALMG 220
M V + M+ +A E +K N E+RL +++ ++ + +SW+PYA +AL+
Sbjct: 225 MSVSNHEKEMAAMAKRLNAKELRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLA 284
Query: 221 IFDYHQYITPLSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMF 266
F +++TP ++ +P +F KA++ +P IY+++HP+F+ + + F
Sbjct: 285 QFGPLEWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTF 330
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 144 bits (363), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 133/226 (58%), Gaps = 11/226 (4%)
Query: 51 SGCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDP-LKTTRNRSRLWILFLWLYGSF 109
+ C++YGFIGG+ G +SI T+A I++DRY V+ P+ K + R+ + I+F+WL+
Sbjct: 105 AACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVL 164
Query: 110 FASLPLVSSKFRYVPEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYVRIC 169
+A P+ Y EG L +CSFDY++ D T+ IL F + P II FCY I
Sbjct: 165 WAIGPIFGWG-AYTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIV 223
Query: 170 MIVIK-----SGMSASRHAAEQKKR----NIEIRLCIVAMGVIGLWFISWTPYATIALMG 220
M V + M+ +A E +K N E+RL +++ ++ + +SW+PYA +AL+
Sbjct: 224 MSVSNHEKEMAAMAKRLNAKELRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLA 283
Query: 221 IFDYHQYITPLSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMF 266
F +++TP ++ +P +F KA++ +P IY+++HP+F+ + + F
Sbjct: 284 QFGPLEWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTF 329
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 104/219 (47%), Gaps = 6/219 (2%)
Query: 51 SGCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLKTTRNRSRLWILFLWLYGSFF 110
+GC + GF L G +++ +L +A++RY VV P+ + N + + + F W+
Sbjct: 109 TGCNLQGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALAC 168
Query: 111 ASLPLVSSKFRYVPEGFLTSCSFDYLASDVWT--KGFILTFFCAAWVIPFFIITFCYVRI 168
A+ PLV RY+PEG SC DY T + F++ F ++IP +I FCY ++
Sbjct: 169 AAPPLVGWS-RYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL 227
Query: 169 CMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDYHQYI 228
V ++ A QK R+ I+ ++ + I W PYA +A
Sbjct: 228 VFTVKEAAAQQQESATTQKAEKEVTRMVII---MVIAFLICWLPYAGVAFYIFTHQGSCF 284
Query: 229 TPLSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFC 267
P+ IPA F K ++ +P IY + + +F+ ++ C
Sbjct: 285 GPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLC 323
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 104/219 (47%), Gaps = 6/219 (2%)
Query: 51 SGCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLKTTRNRSRLWILFLWLYGSFF 110
+GC + GF L G +++ +L +A++RY VV P+ + N + + + F W+
Sbjct: 109 TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALAC 168
Query: 111 ASLPLVSSKFRYVPEGFLTSCSFDYLA--SDVWTKGFILTFFCAAWVIPFFIITFCYVRI 168
A+ PLV RY+PEG SC DY + + F++ F ++IP +I FCY ++
Sbjct: 169 AAPPLVGWS-RYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL 227
Query: 169 CMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDYHQYI 228
V ++ A QK R+ I+ ++ + I W PYA +A
Sbjct: 228 VFTVKEAAAQQQESATTQKAEKEVTRMVII---MVIAFLICWLPYAGVAFYIFTHQGSDF 284
Query: 229 TPLSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFC 267
P+ IPA F K ++ +P IY + + +F+ ++ C
Sbjct: 285 GPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLC 323
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 104/219 (47%), Gaps = 6/219 (2%)
Query: 51 SGCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLKTTRNRSRLWILFLWLYGSFF 110
+GC + GF L G +++ +L +A++RY VV P+ + N + + + F W+
Sbjct: 108 TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALAC 167
Query: 111 ASLPLVSSKFRYVPEGFLTSCSFDYLA--SDVWTKGFILTFFCAAWVIPFFIITFCYVRI 168
A+ PLV RY+PEG SC DY + + F++ F ++IP +I FCY ++
Sbjct: 168 AAPPLVGWS-RYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL 226
Query: 169 CMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDYHQYI 228
V ++ A QK R+ I+ ++ + I W PYA +A
Sbjct: 227 VFTVKEAAAQQQESATTQKAEKEVTRMVII---MVIAFLICWLPYAGVAFYIFTHQGSDF 283
Query: 229 TPLSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFC 267
P+ IPA F K ++ +P IY + + +F+ ++ C
Sbjct: 284 GPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLC 322
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 104/219 (47%), Gaps = 6/219 (2%)
Query: 51 SGCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLKTTRNRSRLWILFLWLYGSFF 110
+GC + GF L G +++ +L +A++RY VV P+ + N + + + F W+
Sbjct: 109 TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALAC 168
Query: 111 ASLPLVSSKFRYVPEGFLTSCSFDYLA--SDVWTKGFILTFFCAAWVIPFFIITFCYVRI 168
A+ PLV RY+PEG SC DY + + F++ F ++IP +I FCY ++
Sbjct: 169 AAPPLVGWS-RYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL 227
Query: 169 CMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDYHQYI 228
V ++ A QK R+ I+ ++ + I W PYA +A
Sbjct: 228 VFTVKEAAAQQQESATTQKAEKEVTRMVII---MVIAFLICWLPYAGVAFYIFTHQGSCF 284
Query: 229 TPLSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFC 267
P+ IPA F K ++ +P IY + + +F+ ++ C
Sbjct: 285 GPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLC 323
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 104/219 (47%), Gaps = 6/219 (2%)
Query: 51 SGCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLKTTRNRSRLWILFLWLYGSFF 110
+GC + GF L G +++ +L +A++RY VV P+ + N + + + F W+
Sbjct: 108 TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALAC 167
Query: 111 ASLPLVSSKFRYVPEGFLTSCSFDYLA--SDVWTKGFILTFFCAAWVIPFFIITFCYVRI 168
A+ PLV RY+PEG SC DY + + F++ F ++IP +I FCY ++
Sbjct: 168 AAPPLVGWS-RYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL 226
Query: 169 CMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDYHQYI 228
V ++ A QK R+ I+ ++ + I W PYA +A
Sbjct: 227 VFTVKEAAAQQQESATTQKAEKEVTRMVII---MVIAFLICWLPYAGVAFYIFTHQGSCF 283
Query: 229 TPLSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFC 267
P+ IPA F K ++ +P IY + + +F+ ++ C
Sbjct: 284 GPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLC 322
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 103/219 (47%), Gaps = 6/219 (2%)
Query: 51 SGCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLKTTRNRSRLWILFLWLYGSFF 110
+GC + GF L G +++ +L +A++RY VV P+ + N + + + F W+
Sbjct: 109 TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALAC 168
Query: 111 ASLPLVSSKFRYVPEGFLTSCSFDYLASDVWT--KGFILTFFCAAWVIPFFIITFCYVRI 168
A+ PLV RY+PEG SC DY T + F++ F ++IP +I FCY ++
Sbjct: 169 AAPPLVGWS-RYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL 227
Query: 169 CMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDYHQYI 228
V ++ A QK R+ I+ + + I W PYA +A
Sbjct: 228 VFTVKEAAAQQQESATTQKAEKEVTRMVII---YVIAFLICWLPYAGVAFYIFTHQGSCF 284
Query: 229 TPLSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFC 267
P+ IPA F K ++ +P IY + + +F+ ++ C
Sbjct: 285 GPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLC 323
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 79/172 (45%), Gaps = 11/172 (6%)
Query: 53 CEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLK-TTRNRSRLWILFLWLYGSFFA 111
CE + I L T SI TL IA+DRY+ + P T+N++R+ IL +W+ +
Sbjct: 78 CEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTS 137
Query: 112 SLPLVSSKFRYVPEGFLTSCSFDYLASDVWT-KGFILTFFCAAWVIPFFIITFCYVRICM 170
LP+ +R + + +C + D +T + + + ++ +P I+ F Y R+
Sbjct: 138 FLPIQMHWYRATHQEAI-NCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRV-- 194
Query: 171 IVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVI-GLWFISWTPYATIALMGI 221
A R + K ++ + +G+I G + + W P+ + ++ +
Sbjct: 195 -----FQEAKRQLQKIDKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHV 241
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 117/274 (42%), Gaps = 33/274 (12%)
Query: 22 TLPNTLPNTYA-AVLNKGIIHGSYQRMLIVSG--------CEIYGFIGGLTGTVSITTLA 72
TL N + A A L G++ + L+V G CE++ + L T SI TL
Sbjct: 44 TLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLC 103
Query: 73 SIALDRYYVVVYPLD-PLKTTRNRSRLWILFLWLYGSFFASLPLVSSKFR-YVPEGFLTS 130
IA+DRY + P TR R+++ I +W + + LP++ +R P+
Sbjct: 104 VIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQAL--K 161
Query: 131 CSFDYLASD-VWTKGFILTFFCAAWVIPFFIITFCYVRICMIVIKSGMSASRHAAEQKKR 189
C D D V + + + ++ IP I+ F +R+ + R + + R
Sbjct: 162 CYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRKIDRASKRKTSR 221
Query: 190 NIEIR--LCIVAMGVI-GLWFISWTPYATIALMGIFDYHQYITPLSSMIPA-LFCK---- 241
+ +R + +G+I G++ + W P+ + ++ +F+ ++P LF
Sbjct: 222 VMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFN--------RDLVPDWLFVAFNWL 273
Query: 242 --AASCIDPYIYAITHPRFKRELIKMFCYNNKKD 273
A S ++P IY P F++ ++ + K D
Sbjct: 274 GYANSAMNPIIYC-RSPDFRKAFKRLLAFPRKAD 306
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 119/274 (43%), Gaps = 35/274 (12%)
Query: 22 TLPNTLPNTYA-AVLNKGIIHGSYQRMLIVSG--------CEIYGFIGGLTGTVSITTLA 72
TL N + A A L G++ + L+V G CE++ + L T SI TL
Sbjct: 44 TLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLC 103
Query: 73 SIALDRYYVVVYPLD-PLKTTRNRSRLWILFLWLYGSFFASLPLVSSKFR-YVPEGFLTS 130
IA+DRY + P TR R+++ I +W + + LP++ +R P+
Sbjct: 104 VIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQAL--K 161
Query: 131 CSFDYLASD-VWTKGFILTFFCAAWVIPFFIITFCYVRICMIVIKSGMSASRHAAEQKKR 189
C D D V + + + ++ IP I+ F +R+ + R A ++KR
Sbjct: 162 CYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRKIDR--ASKRKR 219
Query: 190 NIEIR--LCIVAMGVI-GLWFISWTPYATIALMGIFDYHQYITPLSSMIPA-LFCK---- 241
+ +R + +G+I G++ + W P+ + ++ +F+ ++P LF
Sbjct: 220 VMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFN--------RDLVPDWLFVAFNWL 271
Query: 242 --AASCIDPYIYAITHPRFKRELIKMFCYNNKKD 273
A S ++P IY P F++ ++ + K D
Sbjct: 272 GYANSAMNPIIYC-RSPDFRKAFKRLLAFPRKAD 304
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 53 CEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLK-TTRNRSRLWILFLWLYGSFFA 111
CE + I L T SI TL IA+DRY+ + P T+N++R+ IL +W+ +
Sbjct: 114 CEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTS 173
Query: 112 SLPLVSSKFRYVPEGFLTSCSFDYLASDVWT-KGFILTFFCAAWVIPFFIITFCYVRI 168
LP+ +R + + +C + D +T + + + ++ +P I+ F Y R+
Sbjct: 174 FLPIQMHWYRATHQEAI-NCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRV 230
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 53 CEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLK-TTRNRSRLWILFLWLYGSFFA 111
CE + I L T SI TL IA+DRY+ + P T+N++R+ IL +W+ +
Sbjct: 113 CEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTS 172
Query: 112 SLPLVSSKFRYVPEGFLTSCSFDYLASDVWT-KGFILTFFCAAWVIPFFIITFCYVRI 168
LP+ +R + + +C + D +T + + + ++ +P I+ F Y R+
Sbjct: 173 FLPIQMHWYRATHQEAI-NCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRV 229
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 53 CEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLK-TTRNRSRLWILFLWLYGSFFA 111
CE + I L T SI TL IA+DRY+ + P T+N++R+ IL +W+ +
Sbjct: 82 CEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTS 141
Query: 112 SLPLVSSKFRYVPEGFLTSCSFDYLASDVWT-KGFILTFFCAAWVIPFFIITFCYVRI 168
LP+ +R + + +C + D +T + + + ++ +P I+ F Y R+
Sbjct: 142 FLPIQMHWYRATHQEAI-NCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRV 198
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 53 CEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLK-TTRNRSRLWILFLWLYGSFFA 111
CE + I L T SI TL IA+DRY+ + P T+N++R+ IL +W+ +
Sbjct: 255 CEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTS 314
Query: 112 SLPLVSSKFRYVPEGFLTSCSFDYLASDVWT-KGFILTFFCAAWVIPFFIITFCYVRI 168
LP+ +R + + +C + D +T + + + ++ +P I+ F Y R+
Sbjct: 315 FLPIQMHWYRATHQEAI-NCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRV 371
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 53 CEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLK-TTRNRSRLWILFLWLYGSFFA 111
CE + I L T SI TL IA+DRY+ + P T+N++R+ IL +W+ +
Sbjct: 106 CEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTS 165
Query: 112 SLPLVSSKFRYVPEGFLTSCSFDYLASDVWT-KGFILTFFCAAWVIPFFIITFCYVRI 168
LP+ +R + + +C + D +T + + + ++ +P I+ F Y R+
Sbjct: 166 FLPIQMHWYRATHQEAI-NCYANETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRV 222
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 53 CEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLK-TTRNRSRLWILFLWLYGSFFA 111
CE + I L T SI TL IA+DRY+ + P T+N++R+ IL +W+ +
Sbjct: 107 CEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTS 166
Query: 112 SLPLVSSKFRYVPEGFLTSCSFDYLASDVWT-KGFILTFFCAAWVIPFFIITFCYVRI 168
LP+ +R + + +C + D +T + + + ++ +P I+ F Y R+
Sbjct: 167 FLPIQMHWYRATHQEAI-NCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRV 223
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 53 CEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLK-TTRNRSRLWILFLWLYGSFFA 111
CE + I L T SI TL IA+DRY+ + P T+N++R+ IL +W+ +
Sbjct: 83 CEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTS 142
Query: 112 SLPLVSSKFRYVPEGFLTSCSFDYLASDVWT-KGFILTFFCAAWVIPFFIITFCYVRI 168
LP+ +R + + +C + D +T + + + ++ +P I+ F Y R+
Sbjct: 143 FLPIQMHWYRATHQEAI-NCYANETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRV 199
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 53 CEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLK-TTRNRSRLWILFLWLYGSFFA 111
CE + I L T SI TL IA+DRY+ + P T+N++R+ IL +W+ +
Sbjct: 114 CEFWTSIDVLCVTASIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTS 173
Query: 112 SLPLVSSKFRYVPEGFLTSCSFDYLASDVWT-KGFILTFFCAAWVIPFFIITFCYVRI 168
LP+ +R + + +C + D +T + + + ++ +P I+ F Y R+
Sbjct: 174 FLPIQMHWYRATHQEAI-NCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRV 230
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 86/225 (38%), Gaps = 25/225 (11%)
Query: 53 CEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLKTTRNRSRLWILFLWLYGSFFAS 112
C++ + + I LA I++DRY +V+ L R+ + L W S S
Sbjct: 82 CKVVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQKRHLVKFVCLGCWGL-SMNLS 140
Query: 113 LPLVSSKFRYVPEGFLTSCSFDYLASDV--WTKGFILTFFCAAWVIPFFIITFCYVRICM 170
LP + Y P C ++ L +D W + +++P F++ FCY
Sbjct: 141 LPFFLFRQAYHPNNSSPVC-YEVLGNDTAKWRMVLRILPHTFGFIVPLFVMLFCYGFTLR 199
Query: 171 IVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDYHQYITP 230
+ K+ M QK R + V V+ ++ + W PY + L Q I
Sbjct: 200 TLFKAHMG-------QKHRAMR-----VIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQE 247
Query: 231 -------LSSMIPA--LFCKAASCIDPYIYAITHPRFKRELIKMF 266
+ + A + SC++P IYA F+ +K+
Sbjct: 248 SCERRNNIGRALDATEILGFLHSCLNPIIYAFIGQNFRHGFLKIL 292
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 89/211 (42%), Gaps = 22/211 (10%)
Query: 67 SITTLASIALDRYYVVVYPLDPLKT-TRNRSRLWILFLWLYGSFFASLPLVSSKFRYVPE 125
S TL ++++DRY + +P+ L T ++++ + +W S +P+ V +
Sbjct: 211 STFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVVG-VPVAIMGSAQVED 269
Query: 126 GFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYVRICMIVIKSG---MSASRH 182
+ D W F + F ++++P +I+ CY MI G +S SR
Sbjct: 270 EEIECLVEIPTPQDYWGPVFAICIFLFSFIVPVLVISVCYS--LMIRRLRGVRLLSGSR- 326
Query: 183 AAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDYHQYITPLSSMIPAL--FC 240
+K RN+ R+ + + V+ ++ WTP L + P S A+ FC
Sbjct: 327 ---EKDRNLR-RITRLVLVVVAVFVGCWTPVQVFVLAQGLG----VQPSSETAVAILRFC 378
Query: 241 KA----ASCIDPYIYAITHPRFKRELIKMFC 267
A SC++P +YA FK K C
Sbjct: 379 TALGYVNSCLNPILYAFLDENFKACFRKFCC 409
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 4/134 (2%)
Query: 67 SITTLASIALDRYYVVVYPLDPLK-TTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVPE 125
SI TL +++DRY V +P+ L T ++++ + +WL S +V + +
Sbjct: 108 SIFTLTMMSVDRYIAVCHPVKALDFRTPLKAKIINICIWLLSSSVGISAIVLGGTKVRED 167
Query: 126 GFLTSCSFDYLASDV--WTKGFILTFFCAAWVIPFFIITFCYVRICMIVIKSGMSASRHA 183
+ CS + D W + F A+VIP II CY + ++ +KS S +
Sbjct: 168 VDVIECSLQFPDDDYSWWDLFMKICVFIFAFVIPVLIIIVCYT-LMILRLKSVRLLSGNI 226
Query: 184 AEQKKRNIEIRLCI 197
E + + +RL I
Sbjct: 227 FEMLRIDEGLRLKI 240
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 53 CEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLKTTRN----RSRLWILFLWLYGS 108
C+++ + + T SI L +I++DRY VV P+ T R L I +W+ +
Sbjct: 112 CDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVL-A 170
Query: 109 FFASLPLVSSKFRYVPEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYVRI 168
F S PL+ F + G T CS F++ ++ +PF + Y RI
Sbjct: 171 FAVSCPLL---FGFNTTGDPTVCSIS-------NPDFVIYSSVVSFYLPFGVTVLVYARI 220
Query: 169 CMIV 172
+++
Sbjct: 221 YVVL 224
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 67 SITTLASIALDRYYVVVYPLDPL--KTTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVP 124
SI TL ++++DRY V +P+ L +T RN +++ + W+ S + + +Y
Sbjct: 103 SIFTLCTMSVDRYIAVCHPVKALDFRTPRN-AKIVNVCNWILSSAIGLPVMFMATTKYRQ 161
Query: 125 EGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCY 165
+ +F + + W + F A+++P IIT CY
Sbjct: 162 GSIDCTLTFSH-PTWYWENLLKICVFIFAFIMPVLIITVCY 201
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 67 SITTLASIALDRYYVVVYPLDPLK-TTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVPE 125
SI TL +++DRY V +P+ L T +++L + +W+ S +V + + P
Sbjct: 100 SIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIWVLASGVGVPIMVMAVTQ--PR 157
Query: 126 GFLTSCSFDYLA-SDVWTKGFILTFFCAAWVIPFFIITFCY 165
C + + S W + F A+V+P IIT CY
Sbjct: 158 DGAVVCMLQFPSPSWYWDTVTKICVFLFAFVVPILIITVCY 198
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/141 (19%), Positives = 59/141 (41%), Gaps = 5/141 (3%)
Query: 53 CEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLKTTRNRSRLWILFLWLYGSFFAS 112
C+ + F SI ++ ++A DRY +++PL P + + +++ I +W+ A
Sbjct: 105 CKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQP-RLSATATKVVICVIWVLALLLAF 163
Query: 113 LPLVSSKFRYVPEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYVRICMIV 172
S +P + + + ++ K + + + +P +I + Y + + +
Sbjct: 164 PQGYYSTTETMPSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITL 223
Query: 173 IKS---GMSASR-HAAEQKKR 189
S G S+ R H KR
Sbjct: 224 WASEIPGDSSDRYHEQVSAKR 244
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 12/122 (9%)
Query: 52 GCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLD-PLKTTRNRSRLWILFLWLYGSFF 110
C+++ I + S+ L I+ DRY+ + PL K T R+ + I W+
Sbjct: 84 ACDLWLSIDYVASNASVMNLLVISFDRYFSITRPLTYRAKRTTKRAGVMIGLAWVISFVL 143
Query: 111 ASLPLVSSKF----RYVPEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYV 166
+ ++ ++ R VP G C +L+ T G + AA+ +P I+T Y
Sbjct: 144 WAPAILFWQYFVGKRTVPPG---ECFIQFLSEPTITFGTAI----AAFYMPVTIMTILYW 196
Query: 167 RI 168
RI
Sbjct: 197 RI 198
>pdb|1T7D|A Chain A, Crystal Structure Of Escherichia Coli Type I Signal
Peptidase In Complex With A Lipopeptide Inhibitor
pdb|1T7D|B Chain B, Crystal Structure Of Escherichia Coli Type I Signal
Peptidase In Complex With A Lipopeptide Inhibitor
pdb|3S04|A Chain A, Crystal Structure Of Escherichia Coli Type I Signal
Peptidase In Complex With An Arylomycin Lipoglycopeptide
Antibiotic
pdb|3S04|B Chain B, Crystal Structure Of Escherichia Coli Type I Signal
Peptidase In Complex With An Arylomycin Lipoglycopeptide
Antibiotic
Length = 250
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 222 FDYHQYITPLSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFCYNNKKDLTRTQYYE 281
F Y + P SM+P L ++ + Y I P +++ LI+ + + D+ +Y E
Sbjct: 6 FIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIET-GHPKRGDIVVFKYPE 64
Query: 282 QP 283
P
Sbjct: 65 DP 66
>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
Length = 658
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 34 VLNKGIIHGSYQRMLIVSGCEIYGFIGGLTGTVSITTLASIAL------DRYYVVVYP 85
V +G+I S Q + +G +I+ FI G GT+ + T A+I + +Y V +P
Sbjct: 339 VTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFP 396
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 86/212 (40%), Gaps = 13/212 (6%)
Query: 67 SITTLASIALDRYYVVVYPLD-PLKTTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVP- 124
SI +L +IA+DRY + PL T R++ I W+ P++ P
Sbjct: 91 SIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPK 150
Query: 125 EGFLTS--CSFDYLA---SDVWTKGFILTF-FCAAWVIPFFIITFCYVRICMIVIKS--G 176
EG S C +A DV +++ F F A ++P ++ Y+RI + +
Sbjct: 151 EGKQHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQ 210
Query: 177 MSASRHAAEQKKRNI--EIRLCIVAMGVIGLWFISWTPYATIALMGIFDYHQYITPLSSM 234
M + E+ + + E+ ++GL+ + W P I F PL M
Sbjct: 211 MESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLM 270
Query: 235 IPAL-FCKAASCIDPYIYAITHPRFKRELIKM 265
A+ S ++P+IYA F++ K+
Sbjct: 271 YLAIVLSHTNSVVNPFIYAYRIREFRQTFRKI 302
>pdb|1KN9|A Chain A, Crystal Structure Of A Bacterial Signal Peptidase Apo-
Enzyme, Implications For Signal Peptide Binding And The
Ser-Lys Dyad Mechanism.
pdb|1KN9|B Chain B, Crystal Structure Of A Bacterial Signal Peptidase Apo-
Enzyme, Implications For Signal Peptide Binding And The
Ser-Lys Dyad Mechanism.
pdb|1KN9|C Chain C, Crystal Structure Of A Bacterial Signal Peptidase Apo-
Enzyme, Implications For Signal Peptide Binding And The
Ser-Lys Dyad Mechanism.
pdb|1KN9|D Chain D, Crystal Structure Of A Bacterial Signal Peptidase Apo-
Enzyme, Implications For Signal Peptide Binding And The
Ser-Lys Dyad Mechanism.
pdb|3IIQ|A Chain A, Crystallographic Analysis Of Bacterial Signal Peptidase In
Ternary Complex With Arylomycin A2 And A Beta-Sultam
Inhibitor
pdb|3IIQ|B Chain B, Crystallographic Analysis Of Bacterial Signal Peptidase In
Ternary Complex With Arylomycin A2 And A Beta-Sultam
Inhibitor
Length = 249
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 222 FDYHQYITPLSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFCYNNKKDLTRTQYYE 281
F Y + P SM+P L ++ + Y I P +++ LI+ + + D+ +Y E
Sbjct: 5 FIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIET-GHPKRGDIVVFKYPE 63
Query: 282 QP 283
P
Sbjct: 64 DP 65
>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BC9|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
Length = 658
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 34 VLNKGIIHGSYQRMLIVSGCEIYGFIGGLTGTVSITTLASIAL------DRYYVVVYP 85
V +G+I S Q + +G +I+ FI G GT+ + T A+I + +Y V +P
Sbjct: 339 VTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFP 396
>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
Length = 658
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 34 VLNKGIIHGSYQRMLIVSGCEIYGFIGGLTGTVSITTLASIAL------DRYYVVVYP 85
V +G+I S Q + +G +I+ FI G GT+ + T A+I + +Y V +P
Sbjct: 339 VTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFP 396
>pdb|1B12|A Chain A, Crystal Structure Of Type 1 Signal Peptidase From
Escherichia Coli In Complex With A Beta-Lactam Inhibitor
pdb|1B12|B Chain B, Crystal Structure Of Type 1 Signal Peptidase From
Escherichia Coli In Complex With A Beta-Lactam Inhibitor
pdb|1B12|C Chain C, Crystal Structure Of Type 1 Signal Peptidase From
Escherichia Coli In Complex With A Beta-Lactam Inhibitor
pdb|1B12|D Chain D, Crystal Structure Of Type 1 Signal Peptidase From
Escherichia Coli In Complex With A Beta-Lactam Inhibitor
Length = 248
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 222 FDYHQYITPLSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFCYNNKKDLTRTQYYE 281
F Y + P SM+P L ++ + Y I P +++ LI+ + + D+ +Y E
Sbjct: 4 FIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIET-GHPKRGDIVVFKYPE 62
Query: 282 QP 283
P
Sbjct: 63 DP 64
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 94/228 (41%), Gaps = 15/228 (6%)
Query: 52 GCE-IYGFIGGLTGTVSITTLASIALDRYYVVVYPLD-PLKTTRNRSRLWILFLWLYGSF 109
GC I F+ LT + SI +L +IA+DRY + PL T R++ I W+
Sbjct: 76 GCLFIACFVLVLTAS-SIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFA 134
Query: 110 FASLPLVSSKFRYVP-EGFLTS--CSFDYLA---SDVWTKGFILTF-FCAAWVIPFFIIT 162
P++ P EG S C +A DV +++ F F A ++P ++
Sbjct: 135 IGLTPMLGWNNCGQPKEGKAHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLML 194
Query: 163 FCYVRICMIVIKS--GMSASRHAAEQKKRNI--EIRLCIVAMGVIGLWFISWTPYATIAL 218
Y+RI + + M + E+ + + E+ ++GL+ + W P I
Sbjct: 195 GVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINC 254
Query: 219 MGIFDYHQYITPLSSMIPAL-FCKAASCIDPYIYAITHPRFKRELIKM 265
F PL M A+ S ++P+IYA F++ K+
Sbjct: 255 FTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKI 302
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 12/121 (9%)
Query: 53 CEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLD-PLKTTRNRSRLWILFLWLYGSFFA 111
C+++ + + S+ L I+ DRY+ V PL P+K T + + I W+
Sbjct: 96 CDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILW 155
Query: 112 SLPLVSSKF----RYVPEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYVR 167
+ ++ +F R V +G C + ++ T G + AA+ +P I+T Y
Sbjct: 156 APAILFWQFIVGVRTVEDG---ECYIQFFSNAAVTFGTAI----AAFYLPVIIMTVLYWH 208
Query: 168 I 168
I
Sbjct: 209 I 209
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 17/120 (14%)
Query: 67 SITTLASIALDRYYVVVYPLDPLKTTRNRSR------LWILFLWLYGSFFASLPLVSSKF 120
S+ LA I+LDRY +V+ + + + + +WI L L F + +
Sbjct: 133 SVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADD 192
Query: 121 RYVPEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYVRICMIVIKSGMSAS 180
RY+ + F +D+W F ++P +I CY C+I+ K S S
Sbjct: 193 RYICDRF--------YPNDLWVVVFQFQHIMVGLILPGIVILSCY---CIIISKLSHSGS 241
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 17/120 (14%)
Query: 67 SITTLASIALDRYYVVVYPLDPLKTTRNRSR------LWILFLWLYGSFFASLPLVSSKF 120
S+ LA I+LDRY +V+ + + + + +WI L L F + +
Sbjct: 133 SVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADD 192
Query: 121 RYVPEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYVRICMIVIKSGMSAS 180
RY+ + F +D+W F ++P +I CY C+I+ K S S
Sbjct: 193 RYICDRF--------YPNDLWVVVFQFQHIMVGLILPGIVILSCY---CIIISKLSHSGS 241
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 85/217 (39%), Gaps = 23/217 (10%)
Query: 67 SITTLASIALDRYYVVVYPLD-PLKTTRNRSRLWILFLWLYGSFFASLPLVS-------- 117
SI +L +IA+DRY + PL T R+ I W+ P++
Sbjct: 91 SIFSLLAIAIDRYIAIAIPLRYNGLVTGTRAAGIIAICWVLSFAIGLTPMLGWNNCGQPK 150
Query: 118 ---SKFRYVPEGFLTSCSFDYLASDVWTKGFILTF-FCAAWVIPFFIITFCYVRICMIVI 173
+ + EG +C F+ DV +++ F F A ++P ++ Y+RI
Sbjct: 151 EGKNHSQGCGEG-QVACLFE----DVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFAAAR 205
Query: 174 KS--GMSASRHAAEQKKRNI--EIRLCIVAMGVIGLWFISWTPYATIALMGIFDYHQYIT 229
+ M + E+ + + E+ A + GL+ + W P I F
Sbjct: 206 RQLKQMESQPLPGERARSTLQKEVHAAKSAAIIAGLFALCWLPLHIINCFTFFCPDCSHA 265
Query: 230 PLSSMIPAL-FCKAASCIDPYIYAITHPRFKRELIKM 265
PL M A+ S ++P+IYA F++ K+
Sbjct: 266 PLWLMYLAIVLAHTNSVVNPFIYAYRIREFRQTFRKI 302
>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1
(Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom
Length = 484
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 7/107 (6%)
Query: 67 SITTLASIALDRYYVVVYPLDPLK-TTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVPE 125
SI + I++DR+ VVYP+ L T R+ L +W L+ + VP
Sbjct: 107 SILLMTVISIDRFLAVVYPMQSLSWRTLGRASFTCLAIWALAIAGVVPLLLKEQTIQVPG 166
Query: 126 GFLTSCSFDYLASDVWTKGFILTF----FCAAWVIPFFIITFCYVRI 168
+T+C D L S+ +G+ + + +P I T CYV I
Sbjct: 167 LGITTCH-DVL-SETLLEGYYAYYFSAFSAVFFFVPLIISTVCYVSI 211
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 51 SGCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLKT--TRNRSRLWILFLWLYGS 108
+GC Y F+ + +AS+++ RY + +P KT +R+R++ +I +WL +
Sbjct: 108 AGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKA-KTLMSRSRTKKFISAIWLASA 166
Query: 109 FFA 111
A
Sbjct: 167 LLA 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.140 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,189,252
Number of Sequences: 62578
Number of extensions: 354143
Number of successful extensions: 947
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 866
Number of HSP's gapped (non-prelim): 58
length of query: 322
length of database: 14,973,337
effective HSP length: 99
effective length of query: 223
effective length of database: 8,778,115
effective search space: 1957519645
effective search space used: 1957519645
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.3 bits)