Query psy7555
Match_columns 322
No_of_seqs 223 out of 1729
Neff 10.8
Searched_HMMs 46136
Date Fri Aug 16 21:22:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7555.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7555hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 100.0 1.9E-43 4.1E-48 290.0 11.1 254 1-270 70-337 (423)
2 PHA03234 DNA packaging protein 100.0 2E-40 4.4E-45 282.7 13.3 237 1-268 69-316 (338)
3 KOG4220|consensus 100.0 9.8E-40 2.1E-44 267.7 8.3 253 2-275 66-494 (503)
4 PHA02834 chemokine receptor-li 100.0 3.7E-39 8E-44 275.0 11.9 241 1-271 62-312 (323)
5 PHA03235 DNA packaging protein 100.0 2.4E-38 5.2E-43 275.6 14.0 239 2-268 70-323 (409)
6 PHA02638 CC chemokine receptor 100.0 9.7E-37 2.1E-41 266.8 12.7 242 1-270 132-399 (417)
7 PHA03087 G protein-coupled che 100.0 8.5E-34 1.8E-38 244.3 12.9 244 1-272 74-327 (335)
8 PF00001 7tm_1: 7 transmembran 100.0 1.2E-32 2.5E-37 228.4 9.5 233 2-251 20-257 (257)
9 KOG2087|consensus 99.9 1.3E-26 2.9E-31 189.0 2.1 246 3-269 61-307 (363)
10 PF10320 7TM_GPCR_Srsx: Serpen 99.8 6.1E-19 1.3E-23 145.2 11.2 230 1-266 25-257 (257)
11 PF10324 7TM_GPCR_Srw: Serpent 99.8 7.3E-19 1.6E-23 150.3 10.6 257 1-269 31-318 (318)
12 PF10323 7TM_GPCR_Srv: Serpent 99.7 3.8E-16 8.3E-21 130.3 9.8 207 53-268 75-283 (283)
13 PF10328 7TM_GPCR_Srx: Serpent 99.6 5.6E-15 1.2E-19 123.5 12.7 236 2-266 29-273 (274)
14 PF05462 Dicty_CAR: Slime mold 99.3 7.5E-11 1.6E-15 98.4 16.0 199 48-270 70-272 (303)
15 PF05296 TAS2R: Mammalian tast 99.3 1E-11 2.2E-16 104.6 11.0 218 48-270 77-303 (303)
16 PF10321 7TM_GPCR_Srt: Serpent 99.2 1.6E-10 3.4E-15 97.0 13.1 199 56-272 109-311 (313)
17 PF03402 V1R: Vomeronasal orga 99.2 2.9E-11 6.4E-16 98.1 5.3 239 2-262 12-263 (265)
18 KOG4193|consensus 98.9 5E-08 1.1E-12 88.7 15.7 200 52-275 385-588 (610)
19 PF10317 7TM_GPCR_Srd: Serpent 98.9 3E-08 6.5E-13 83.6 12.3 247 3-264 36-292 (292)
20 PF02101 Ocular_alb: Ocular al 98.8 1.5E-07 3.3E-12 78.6 14.4 227 5-251 71-310 (405)
21 PF10326 7TM_GPCR_Str: Serpent 98.8 6.1E-09 1.3E-13 88.7 3.9 212 44-263 73-307 (307)
22 PF11710 Git3: G protein-coupl 98.6 1.1E-07 2.4E-12 75.0 5.4 148 4-177 39-199 (201)
23 PF02118 Srg: Srg family chemo 98.4 1.9E-06 4.2E-11 72.2 10.0 196 50-261 78-274 (275)
24 PF10292 7TM_GPCR_Srab: Serpen 98.4 1.3E-05 2.9E-10 68.6 15.1 214 46-267 89-305 (324)
25 PF10327 7TM_GPCR_Sri: Serpent 98.3 9.4E-06 2E-10 68.7 11.9 202 53-261 90-302 (303)
26 PF10318 7TM_GPCR_Srh: Serpent 98.3 4.6E-05 1E-09 64.8 14.9 210 50-268 82-302 (302)
27 PF03125 Sre: C. elegans Sre G 98.2 0.0001 2.2E-09 64.3 14.8 191 55-270 125-323 (365)
28 PF04789 DUF621: Protein of un 98.1 0.00023 4.9E-09 57.3 14.3 202 50-264 87-294 (305)
29 PF10322 7TM_GPCR_Sru: Serpent 98.0 6.8E-05 1.5E-09 63.0 10.6 153 52-207 102-257 (307)
30 KOG4564|consensus 98.0 6.2E-05 1.3E-09 66.1 9.6 198 48-271 224-422 (473)
31 PF10319 7TM_GPCR_Srj: Serpent 97.8 0.00033 7.2E-09 58.1 10.9 74 187-262 236-310 (310)
32 PF02117 7TM_GPCR_Sra: Serpent 97.8 0.00078 1.7E-08 57.7 12.9 166 45-219 93-258 (328)
33 PF00002 7tm_2: 7 transmembran 97.7 7.3E-06 1.6E-10 67.3 0.0 139 52-213 71-214 (242)
34 PF11970 Git3_C: G protein-cou 97.4 0.00064 1.4E-08 44.1 5.5 71 188-258 3-74 (76)
35 PF03383 Serpentine_r_xa: Caen 97.0 0.00093 2E-08 49.5 3.6 63 55-117 46-109 (153)
36 PF02076 STE3: Pheromone A rec 96.9 0.012 2.7E-07 49.0 10.0 159 51-220 57-221 (283)
37 PF10316 7TM_GPCR_Srbc: Serpen 96.6 0.053 1.1E-06 45.1 11.6 38 57-94 85-122 (273)
38 PF01534 Frizzled: Frizzled/Sm 95.2 0.36 7.9E-06 41.3 11.0 85 48-135 89-173 (328)
39 PF02175 7TM_GPCR_Srb: Serpent 92.8 0.13 2.9E-06 41.0 3.5 48 43-90 75-122 (236)
40 PF06681 DUF1182: Protein of u 82.0 5.7 0.00012 31.2 5.9 41 47-87 111-151 (226)
41 PF13853 7tm_4: Olfactory rece 73.7 0.31 6.6E-06 36.4 -2.9 79 98-177 5-89 (144)
42 KOG4219|consensus 63.0 1.1E+02 0.0024 27.1 10.1 101 166-266 233-337 (423)
43 KOG4289|consensus 59.8 88 0.0019 32.8 9.5 176 49-263 2222-2399(2531)
44 PF10325 7TM_GPCR_Srz: Serpent 58.5 36 0.00078 28.2 6.3 110 58-177 87-198 (267)
45 PF15086 UPF0542: Uncharacteri 57.8 28 0.00062 22.1 4.0 34 144-177 19-53 (74)
46 PHA03235 DNA packaging protein 54.0 1.3E+02 0.0029 26.9 9.3 39 231-269 290-328 (409)
47 PF09889 DUF2116: Uncharacteri 45.5 43 0.00094 20.5 3.4 23 188-210 31-53 (59)
48 PF11044 TMEMspv1-c74-12: Plec 42.1 65 0.0014 18.2 3.8 29 149-177 6-34 (49)
49 PF15050 SCIMP: SCIMP protein 38.7 74 0.0016 22.6 4.1 33 145-177 8-40 (133)
50 KOG4220|consensus 35.8 2.1E+02 0.0045 25.7 7.2 75 191-266 143-228 (503)
51 PF04238 DUF420: Protein of un 35.4 84 0.0018 23.0 4.3 33 190-222 32-64 (133)
52 COG1007 NuoN NADH:ubiquinone o 30.6 4.3E+02 0.0094 24.3 8.7 77 89-179 355-431 (475)
53 PF06305 DUF1049: Protein of u 28.1 94 0.002 19.3 3.2 28 148-175 26-53 (68)
54 PF05241 EBP: Emopamil binding 24.7 1.4E+02 0.0031 23.5 4.2 36 142-177 158-193 (194)
55 COG1823 Predicted Na+/dicarbox 23.0 5.4E+02 0.012 22.9 8.2 59 194-252 220-293 (458)
56 PF12166 DUF3595: Protein of u 22.8 56 0.0012 29.4 1.9 36 188-223 57-92 (422)
57 KOG2575|consensus 22.8 85 0.0018 27.8 2.8 26 192-217 254-279 (510)
58 PF11368 DUF3169: Protein of u 22.1 4.5E+02 0.0097 21.6 10.6 32 188-219 88-119 (248)
59 PF15102 TMEM154: TMEM154 prot 20.9 22 0.00048 26.3 -0.8 8 151-158 58-65 (146)
No 1
>KOG4219|consensus
Probab=100.00 E-value=1.9e-43 Score=290.02 Aligned_cols=254 Identities=17% Similarity=0.340 Sum_probs=211.6
Q ss_pred CceeeehhhhHhhh-hhccccccccccchhhHHhhhhcccccccceeeeccccchhhhhhhhhhhHHHHHHHHHHhhhhh
Q psy7555 1 MTTYILDLNTSILL-PALCMPITLPNTLPNTYAAVLNKGIIHGSYQRMLIVSGCEIYGFIGGLTGTVSITTLASIALDRY 79 (322)
Q Consensus 1 ~~~~i~nLai~Dll-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~l~~~~~~~s~~~l~~iaidRy 79 (322)
.|.||+|||+||++ ++++.|+...+.+ ...|.+|...|++..|+......+|++++++||+|||
T Consensus 70 tnyfL~NLAfADl~~s~Fn~~f~f~yal---------------~~~W~~G~f~C~f~nf~~itav~vSVfTlvAiA~DRy 134 (423)
T KOG4219|consen 70 TNYFLVNLAFADLSMSIFNTVFNFQYAL---------------HQEWYFGSFYCRFVNFFPITAVFVSVFTLVAIAIDRY 134 (423)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHH---------------HhccccccceeeeccccchhhhhHhHHHHHHHHHHHH
Confidence 47899999999998 4668888887655 4799999999999999999999999999999999999
Q ss_pred eeeeccCCCCCccchhhhhhhhHHHHHHHHHhhccccccccccccC---Cceeccccccccc----c---cccchhhhhh
Q psy7555 80 YVVVYPLDPLKTTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVPE---GFLTSCSFDYLAS----D---VWTKGFILTF 149 (322)
Q Consensus 80 ~ai~~p~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~---~~~~~C~~~~~~~----~---~~~~~~~~~~ 149 (322)
+||.||++.+ .+++.+..+++++|+.++++++|..+.......+. .....|...+++. + ...+.|....
T Consensus 135 ~AIi~Pl~~r-~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~~~~~~~~~~~pe~~~~~~~~~~~~~~y~~vl 213 (423)
T KOG4219|consen 135 MAIIHPLQPR-PSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDGESRVVCVTAWPEHVCPTENESLLMQGYNYVL 213 (423)
T ss_pred HHHhhhcccC-CCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCCcceEEEEEecccccCCcchhhhhhcceeeee
Confidence 9999999988 89999999999999999999999988743333332 2244565555433 1 1123478888
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHhccccccchHHHhhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHhccc---c
Q psy7555 150 FCAAWVIPFFIITFCYVRICMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDYH---Q 226 (322)
Q Consensus 150 ~~~~~~~p~~i~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~---~ 226 (322)
.++.+++|++++.+.|..|.+.+|..+..+.+..+..++.+.++|+.|++++++..|.+||+||.+..++.....+ .
T Consensus 214 ~~lqYflPliVl~~~Yt~iav~LW~~~~~gd~~d~~~~~~kak~K~vkmliiVV~~FaicWlPyh~y~il~~~~~~i~~~ 293 (423)
T KOG4219|consen 214 LFLQYFLPLIVLGLAYTVIAVTLWGRRIPGDQQDRKHEQLKAKKKVVKMLIIVVVIFAICWLPYHIYFILNATNPEINRK 293 (423)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccCccchhchhhHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHhHHHHHHH
Confidence 9999999999999999999999999886555555556677888899999999999999999999999988765322 2
Q ss_pred ccchhhhHHHHHHHHhhcchhhhhhhccChhHHHHHHHhhccCC
Q psy7555 227 YITPLSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFCYNN 270 (322)
Q Consensus 227 ~~~~~~~~i~~~l~~~~s~~nP~iY~~~~~~fR~~~~~~~~~~~ 270 (322)
.....++....|+++.|++.||+||++.|++||..+++.|+++.
T Consensus 294 k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~~~fr~cp 337 (423)
T KOG4219|consen 294 KFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGFRRAFRWCP 337 (423)
T ss_pred HHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHHhhhhheee
Confidence 23345677789999999999999999999999999999998774
No 2
>PHA03234 DNA packaging protein UL33; Provisional
Probab=100.00 E-value=2e-40 Score=282.67 Aligned_cols=237 Identities=20% Similarity=0.179 Sum_probs=177.6
Q ss_pred CceeeehhhhHhhhhhccccccccccchhhHHhhhhcccccccceeeeccccchhhhhhhhhhhHHHHHHHHHHhhhhhe
Q psy7555 1 MTTYILDLNTSILLPALCMPITLPNTLPNTYAAVLNKGIIHGSYQRMLIVSGCEIYGFIGGLTGTVSITTLASIALDRYY 80 (322)
Q Consensus 1 ~~~~i~nLai~Dll~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~l~~~~~~~s~~~l~~iaidRy~ 80 (322)
.|+|++|||+|||+.++.+|+...+. .+.|++|+..|++.+++...+..+|++++++||+|||+
T Consensus 69 tn~fi~NLAvaDLL~~l~lp~~~~~~----------------~~~w~fG~~lCk~~~~~~~~~~~~Si~~L~~ISiDRY~ 132 (338)
T PHA03234 69 TSFYLITLFASDFLHMLCVFFLTLNR----------------EALFNFNQAFCQCVLFIYHASCSYSICMLAIIATIRYK 132 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------------hCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHe
Confidence 37899999999999877777665431 24699999999999999999999999999999999999
Q ss_pred eeeccCCCCCccchhhhhhhhHHHHHHHHHhhccccccccccccCCceecccccccccccccchhh---hhhhhhhhhhh
Q psy7555 81 VVVYPLDPLKTTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVPEGFLTSCSFDYLASDVWTKGFI---LTFFCAAWVIP 157 (322)
Q Consensus 81 ai~~p~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~---~~~~~~~~~~p 157 (322)
||++|.+++. ++++....+++.|+.+++.++|.++. ......+++...|...++.++. ...+. .....+++++|
T Consensus 133 aIv~p~~~~~-~~~~~~~~i~~~Wi~s~l~~~P~l~~-~~~~~~~~~~~~C~~~~~~~~~-~~~~~~~~~~~~~~~f~iP 209 (338)
T PHA03234 133 TLHRRKKNDK-KNNHIGRNIGILFLASAMCAIPAALF-VKTEGKKGNYGKCNIHISSKKA-YDLFIAIKIVFCFIWGIFP 209 (338)
T ss_pred eeechhhhhh-hhhhHHHHHHHHHHHHHHHHhhHhHe-eeeeecCCCCCcCcccCCcchh-hHHHHHHHHHHHHHHHHHH
Confidence 9999998653 33444455666799999999998765 2222222223468776643221 11111 12233457899
Q ss_pred hhhhHHHHHHHHHHHHHhccccccchHHHhhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHhcc---c-cc----cc
Q psy7555 158 FFIITFCYVRICMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDY---H-QY----IT 229 (322)
Q Consensus 158 ~~i~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~---~-~~----~~ 229 (322)
++++.++|.+|.+++++.+ .++++|++|++++++++|++||+||.+..++..... . .. ..
T Consensus 210 l~im~~cY~~I~~~L~~~~------------~~~~~k~~k~i~~vv~vF~iCWlPy~iv~l~~~~~~~~~~~~c~~~~~~ 277 (338)
T PHA03234 210 TMIFSFFYVIFCKALHALT------------EKKHKKTLFFIRILILSFLCIQIPNIAILICEIAFLYIANNSCFGLAQR 277 (338)
T ss_pred HHHHHHHHHHHHHHHHhhh------------hhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCcchHHHHH
Confidence 9999999999999987531 134578999999999999999999999877654311 0 01 11
Q ss_pred hhhhHHHHHHHHhhcchhhhhhhccChhHHHHHHHhhcc
Q psy7555 230 PLSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFCY 268 (322)
Q Consensus 230 ~~~~~i~~~l~~~~s~~nP~iY~~~~~~fR~~~~~~~~~ 268 (322)
.....+...++++||++||+||++.+++||+++++.+++
T Consensus 278 ~~~~~v~~~La~~nsclNPiIY~f~~~~FR~~~~~~~~~ 316 (338)
T PHA03234 278 EILQIIIRLMPEIHCFSNPLVYAFTGGDFRLRFTACFQD 316 (338)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHH
Confidence 234567889999999999999999999999998877643
No 3
>KOG4220|consensus
Probab=100.00 E-value=9.8e-40 Score=267.67 Aligned_cols=253 Identities=21% Similarity=0.287 Sum_probs=211.4
Q ss_pred ceeeehhhhHhhh-hhccccccccccchhhHHhhhhcccccccceeeeccccchhhhhhhhhhhHHHHHHHHHHhhhhhe
Q psy7555 2 TTYILDLNTSILL-PALCMPITLPNTLPNTYAAVLNKGIIHGSYQRMLIVSGCEIYGFIGGLTGTVSITTLASIALDRYY 80 (322)
Q Consensus 2 ~~~i~nLai~Dll-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~l~~~~~~~s~~~l~~iaidRy~ 80 (322)
|+|+++||+|||+ +.+.+|+...+.+ .+.|++|...|.++..+-++...+|++.+..|++|||.
T Consensus 66 NYfLfSLAcADliIG~~SMnl~t~Y~l---------------mg~W~LG~~~CdlWLalDYvaSNASVmNLLiISFDRYF 130 (503)
T KOG4220|consen 66 NYFLFSLACADLIIGAFSMNLYTTYTL---------------MGYWPLGPLVCDLWLALDYVASNASVMNLLIISFDRYF 130 (503)
T ss_pred ceeehHHHHhhhhhheeechHHHHHHH---------------HcccccchHHHHHHHHHHHHhhhhhhhhhheeeeecce
Confidence 7999999999997 5679999998877 47999999999999999999999999999999999999
Q ss_pred eeeccCCCCC-ccchhhhhhhhHHHHHHHHHhhcccccccccccc--CCceecccccccccccccchhhhhhhhhhhhhh
Q psy7555 81 VVVYPLDPLK-TTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVP--EGFLTSCSFDYLASDVWTKGFILTFFCAAWVIP 157 (322)
Q Consensus 81 ai~~p~~~~~-~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~--~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~p 157 (322)
.|.+|+.|+. .|.+++...|+++|++++++-.|.++. |..... ....+.|..++-.+. .+.+...+..|.+|
T Consensus 131 sVTrPLtYrakRTtkrA~~MI~~AW~iSfiLWaPaIl~-WqyivGkrTv~~~eC~iQFlsnp----~iTfGTAiAAFYlP 205 (503)
T KOG4220|consen 131 SVTRPLTYRAKRTTKRAGLMIGAAWVLSFVLWAPAILF-WQYIVGKRTVPDGECYIQFLSNP----AITFGTAIAAFYLP 205 (503)
T ss_pred eecccccccccccchHHHHHHHHHHHHHHHHHHHHHHh-hHhheeeeecCCCceEEEeecCc----eeehhHHHHHHHhh
Confidence 9999999977 999999999999999999999887766 333222 234557988775432 34555667788999
Q ss_pred hhhhHHHHHHHHHHHHHhcccc----------------------------------------------------------
Q psy7555 158 FFIITFCYVRICMIVIKSGMSA---------------------------------------------------------- 179 (322)
Q Consensus 158 ~~i~~~~y~~i~~~~~~~~~~~---------------------------------------------------------- 179 (322)
+.+|.++|++|++..+++.++.
T Consensus 206 VtiM~~LY~rIyret~kR~k~~~~lq~s~~~~~~~~~~~~~~~~~~~~s~r~~p~~~~~~~~~~~~~~~~~k~ps~~~~~ 285 (503)
T KOG4220|consen 206 VTIMTILYWRIYRETRKRQKELAKLQASLPSFSAIKLSPESPKGDSKSSGRSSPSEEGKREPLTNGCISNSKAPSLTPTE 285 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccCcccccccccCCCCCCCccccccccCCCCccccccCcccCCcc
Confidence 9999999999999999776500
Q ss_pred --------------------------------------------------------------------------------
Q psy7555 180 -------------------------------------------------------------------------------- 179 (322)
Q Consensus 180 -------------------------------------------------------------------------------- 179 (322)
T Consensus 286 ~~~~s~~edsd~~~~~s~~~s~~~~~~se~~~~~~v~~~~~~~~~~~D~~~~~~~i~i~~~~~~p~s~sc~p~~~~t~~~ 365 (503)
T KOG4220|consen 286 SWKPSEKEDSDESSSESLTSSPLERPGSELSEIEAVVAKMPANQRKVDEEGLNTLIQIPTDQMLPKSDSCVPIFSATDTD 365 (503)
T ss_pred CCCCccccccccccccccccCCccccccccccccceeccCCCCcCCCCccccccccccccccCCCCCCcccccccccccc
Confidence
Q ss_pred -----------ccc--------------------hHHH---hhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHhccc
Q psy7555 180 -----------SRH--------------------AAEQ---KKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDYH 225 (322)
Q Consensus 180 -----------~~~--------------------~~~~---~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~ 225 (322)
.+. +..+ ....+|+|++|++.+|.+.|+++|.||.|+.++..+..
T Consensus 366 ~~s~~ns~~gk~r~~~~~~~~~~~~kkf~~~~r~q~~k~k~~~~~rErKAAkTLsAILlAFIiTWtPYNImVlv~tFC~- 444 (503)
T KOG4220|consen 366 KTTDTNSGAGKRRAGPVARKTGLDYKKFAKRARSQSRKKKKMSLVRERKAAKTLSAILLAFILTWTPYNIMVLVNTFCK- 444 (503)
T ss_pred cCCccCccccccccCccccccchhhhhhhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHcccceeeeehHhhcc-
Confidence 000 0000 01267999999999999999999999999999998854
Q ss_pred cccchhhhHHHHHHHHhhcchhhhhhhccChhHHHHHHHhhccCCCCCCC
Q psy7555 226 QYITPLSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFCYNNKKDLT 275 (322)
Q Consensus 226 ~~~~~~~~~i~~~l~~~~s~~nP~iY~~~~~~fR~~~~~~~~~~~~~~~~ 275 (322)
+..+..++.+..|+.++||.+||+.|+++|+.||+.+++++.|+.+.+..
T Consensus 445 ~CiP~tlW~~gYwLCYINSTiNP~CYALCNatFrkTfk~lL~Cr~~~~~~ 494 (503)
T KOG4220|consen 445 NCIPETLWTFGYWLCYINSTINPLCYALCNATFRKTFKRLLLCRWKKRRT 494 (503)
T ss_pred cccchhHhhhhhheeeecccccHHHHHHHhHHHHHHHHHhheeeecccch
Confidence 56777889999999999999999999999999999999999887766543
No 4
>PHA02834 chemokine receptor-like protein; Provisional
Probab=100.00 E-value=3.7e-39 Score=275.03 Aligned_cols=241 Identities=20% Similarity=0.351 Sum_probs=183.3
Q ss_pred CceeeehhhhHhhhhhccccccccccchhhHHhhhhcccccccceeeeccccchhhhhhhhhhhHHHHHHHHHHhhhhhe
Q psy7555 1 MTTYILDLNTSILLPALCMPITLPNTLPNTYAAVLNKGIIHGSYQRMLIVSGCEIYGFIGGLTGTVSITTLASIALDRYY 80 (322)
Q Consensus 1 ~~~~i~nLai~Dll~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~l~~~~~~~s~~~l~~iaidRy~ 80 (322)
.|+|++|||+||++.++.+|+.+... .++|.+|+..|++.+++...+..+|++++++||+|||.
T Consensus 62 ~n~~i~nLAiaDll~~~~lP~~i~~~----------------~~~w~~g~~~C~~~~~~~~~~~~~Si~tL~~IsidRY~ 125 (323)
T PHA02834 62 VDVYLFNIAMSDLMLVFSFPFIIHND----------------LNEWIFGEFMCKLVLGVYFVGFFSNMFFVTLISIDRYI 125 (323)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH----------------cCCcCCcchHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 47899999999998777888765432 24699999999999999999999999999999999999
Q ss_pred eeeccCCCCCccchhhhhhhhHHHHHHHHHhhccccccccccccCCceecccccccccc-cccchhhhhhhhhhhhhhhh
Q psy7555 81 VVVYPLDPLKTTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVPEGFLTSCSFDYLASD-VWTKGFILTFFCAAWVIPFF 159 (322)
Q Consensus 81 ai~~p~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~-~~~~~~~~~~~~~~~~~p~~ 159 (322)
+|++|.+++..+.+++...++++|+.+++.++|+... +.. ....+...|..+....+ .....+.....++.+++|++
T Consensus 126 aI~~P~~~~~~~~~~~~~~i~~iWi~s~l~~~P~~~~-~~~-~~~~~~~~C~~~~~~~~~~~~~~~~~~~~i~~f~iPl~ 203 (323)
T PHA02834 126 LVVNATKIKNKSISLSVLLSVAAWVCSVILSMPAMVL-YYV-DNTDNLKQCIFNDYHENFSWSAFFNFEINIFGIVIPLI 203 (323)
T ss_pred heeCchhccCCccchHHHHHHHHHHHHHHHHhhHHHH-HHh-ccCCCceEEeccCCccchHHHHHHHHHHHHHHHHHHHH
Confidence 9999998754556777788899999999999988665 221 22223346853222111 11112233345778999999
Q ss_pred hhHHHHHHHHHHHHHhccccccchHHHhhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHhcccccc-------ch--
Q psy7555 160 IITFCYVRICMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDYHQYI-------TP-- 230 (322)
Q Consensus 160 i~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~-------~~-- 230 (322)
++.++|.+|.++++++++ ++++|.+|++++++++|++||+|+.+..++..+.+.... ..
T Consensus 204 ii~~~Y~~I~~~l~~~~~------------~~~~k~~k~~~~vv~~F~icWlPy~i~~~l~~~~~~~~~~~~~~~~~~~~ 271 (323)
T PHA02834 204 ILIYCYSKILYTLKNCKN------------KNKTRSIKIILTVVTFTVVFWVPFNIVLFINSLQSVGLIDIGCYHFKKIV 271 (323)
T ss_pred HHHHHHHHHHHHHHhccC------------cccceEEeehhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHH
Confidence 999999999999987532 234578899999999999999999999887655321111 11
Q ss_pred hhhHHHHHHHHhhcchhhhhhhccChhHHHHHHHhhccCCC
Q psy7555 231 LSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFCYNNK 271 (322)
Q Consensus 231 ~~~~i~~~l~~~~s~~nP~iY~~~~~~fR~~~~~~~~~~~~ 271 (322)
....+..+++++||++||+||++.+++||+++++++++.++
T Consensus 272 ~~~~i~~~l~~~ns~iNPiIY~~~~~~fR~~~~~~~~~~~~ 312 (323)
T PHA02834 272 YSIDIAELISFVHCCVNPIIYAFVGKNFKKVFKNMFCRTNN 312 (323)
T ss_pred HHHHHHHHHHHhhccccHHHHHHhcHHHHHHHHHHHHhhhh
Confidence 12346788999999999999999999999999999876554
No 5
>PHA03235 DNA packaging protein UL33; Provisional
Probab=100.00 E-value=2.4e-38 Score=275.63 Aligned_cols=239 Identities=17% Similarity=0.218 Sum_probs=181.5
Q ss_pred ceeeehhhhHhhhhhccccccccccchhhHHhhhhcccccccceeeeccccchhhhhhhhhhhHHHHHHHHHHhhhhhee
Q psy7555 2 TTYILDLNTSILLPALCMPITLPNTLPNTYAAVLNKGIIHGSYQRMLIVSGCEIYGFIGGLTGTVSITTLASIALDRYYV 81 (322)
Q Consensus 2 ~~~i~nLai~Dll~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~l~~~~~~~s~~~l~~iaidRy~a 81 (322)
|+|++|||++|++.++.+|+.+... ...|..|+..|++.+++...+..+|++++++||+|||++
T Consensus 70 ~~~I~NLAvsDLl~l~~lP~~i~~~----------------~~~~~~g~~~Ck~~~~l~~~~~~~Si~tL~~ISiDRY~a 133 (409)
T PHA03235 70 TLYMTNLYLANLLTVFVLPFIMLSN----------------QGLLSGSVAGCKFASLLYYASCTVGFATVALIAADRYRV 133 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc----------------CccccCCCCeehhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999998777888776421 123444578999999999999999999999999999999
Q ss_pred eeccCCCCCccchhhhhhhhHHHHHHHHHhhccccccccc----ccc-CCceeccccccccccc--ccchhhhhhhhhhh
Q psy7555 82 VVYPLDPLKTTRNRSRLWILFLWLYGSFFASLPLVSSKFR----YVP-EGFLTSCSFDYLASDV--WTKGFILTFFCAAW 154 (322)
Q Consensus 82 i~~p~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~----~~~-~~~~~~C~~~~~~~~~--~~~~~~~~~~~~~~ 154 (322)
|++|.+++..+++++...++++|+.++++++|+.+..+.. ..+ ..+...|...+..+.. ....|.....++.+
T Consensus 134 I~~p~~~~~~~~~~a~~ii~~iWi~sll~s~P~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~y~i~l~i~~f 213 (409)
T PHA03235 134 IHQRTRARSSAYRSTYKILGLTWFASLICSGPAPVYTTVVAHDDVDPEAPGYETCVIYFRADQVKTVLSTFKVLLTLVWG 213 (409)
T ss_pred eechhhccCcccchhhhhHHHHHHHHHHHHHHHHHHHhhhhccccCcCCCCcceeeEeCCchhHHHHHHHHHHHHHHHHH
Confidence 9999876556788899999999999999999876542211 111 1234468654432211 11234555667789
Q ss_pred hhhhhhhHHHHHHHHHHHHHhccccccchHHHhhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHhccc--------c
Q psy7555 155 VIPFFIITFCYVRICMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDYH--------Q 226 (322)
Q Consensus 155 ~~p~~i~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~--------~ 226 (322)
++|+++++++|.+|+++++++.+ ++++|..++++++++.|++||+||.+..++..+... .
T Consensus 214 ~iPl~im~~~Y~~I~~~l~~~~~------------~~~~k~~~~v~iivv~F~iCWlPy~v~~l~~~~~~~~~~~~~~~~ 281 (409)
T PHA03235 214 IAPVVMMTWFYTFFYRTLKRASY------------KKRSRTLTFVCILLLSFLCLQTPFVAIMIFDSYATLIWPSDCEHI 281 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh------------hcchhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCchhh
Confidence 99999999999999999987532 123467788888899999999999998887654211 0
Q ss_pred ccchhhhHHHHHHHHhhcchhhhhhhccChhHHHHHHHhhcc
Q psy7555 227 YITPLSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFCY 268 (322)
Q Consensus 227 ~~~~~~~~i~~~l~~~~s~~nP~iY~~~~~~fR~~~~~~~~~ 268 (322)
........+..+++++|+++||+||++.+++||+++++.+++
T Consensus 282 ~~~~~~~~i~~~La~~ns~lNPiIY~~~~~~FRk~~~~~l~~ 323 (409)
T PHA03235 282 NLRDAVSTLSRLVPNLHCLLNPILYAFLGNDFLKRFRQCFRG 323 (409)
T ss_pred hHHHHHHHHHHHHHHHHHhHhHHHHHHhhHHHHHHHHHHHhh
Confidence 112245667889999999999999999999999999988854
No 6
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=100.00 E-value=9.7e-37 Score=266.81 Aligned_cols=242 Identities=17% Similarity=0.265 Sum_probs=187.0
Q ss_pred CceeeehhhhHhhhhhccccccccccchhhHHhhhhcccccccceeeeccccchhhhhhhhhhhHHHHHHHHHHhhhhhe
Q psy7555 1 MTTYILDLNTSILLPALCMPITLPNTLPNTYAAVLNKGIIHGSYQRMLIVSGCEIYGFIGGLTGTVSITTLASIALDRYY 80 (322)
Q Consensus 1 ~~~~i~nLai~Dll~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~l~~~~~~~s~~~l~~iaidRy~ 80 (322)
.|++++|||++|++.++.+|+++... .++|.+|+..|++..++...+..+++++++++++|||+
T Consensus 132 t~i~llnLAisDLl~~l~lPf~i~~~----------------~~~W~fg~~~Ck~~~~l~~~~~~~Si~~L~~isiDRYl 195 (417)
T PHA02638 132 TDIYIFNLAISDLIFVIDFPFIIYNE----------------FDQWIFGDFMCKVISASYYIGFFSNMFLITLMSIDRYF 195 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH----------------hccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999888889877542 25799999999999999999999999999999999999
Q ss_pred eeeccCCCCC-ccchhhhhhhhHHHHHHHHHhhcccccccccc------ccC--Cceeccccccccccc----ccchhhh
Q psy7555 81 VVVYPLDPLK-TTRNRSRLWILFLWLYGSFFASLPLVSSKFRY------VPE--GFLTSCSFDYLASDV----WTKGFIL 147 (322)
Q Consensus 81 ai~~p~~~~~-~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~------~~~--~~~~~C~~~~~~~~~----~~~~~~~ 147 (322)
||+||.++++ .+++.....++++|+++++.++|+.+...... ..+ .....|...++.+.. +...+..
T Consensus 196 aIv~p~~~~~~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~ 275 (417)
T PHA02638 196 AILYPISFQKYRTFNIGIILCIISWILSLIITSPAYFIFEASNIIFSAQDSNETISNYQCTLIEDNEKNNISFLGRILQF 275 (417)
T ss_pred HHhccccccceecHhhhHhhHhHHHHHHHHHHHHHHHHhhccccccccccCCCCccCCeeeeeccccchhHHHHHHHHHH
Confidence 9999999866 66677788899999999999999977622110 111 123468654432211 1122344
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccchHHHhhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHhccccc
Q psy7555 148 TFFCAAWVIPFFIITFCYVRICMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDYHQY 227 (322)
Q Consensus 148 ~~~~~~~~~p~~i~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~ 227 (322)
...++++++|++++++||.+|++++++.++ ++++|.+|+++++++.|++||+|+.+..++..+.....
T Consensus 276 ~~~i~~f~lPl~vmi~cY~~I~~~L~~~~~------------~~k~k~~rli~~ivi~f~lcW~Py~i~~ll~~~~~~~~ 343 (417)
T PHA02638 276 EINILGMFIPIIIFAFCYIKIILKLKQLKK------------SKKTKSIIIVSIIIICSLICWIPLNIVILFATMYSFKG 343 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------------cccchhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Confidence 456778899999999999999999976432 23456789999999999999999999988876531100
Q ss_pred -------------cchhhhHHHHHHHHhhcchhhhhhhccChhHHHHHHHhhccCC
Q psy7555 228 -------------ITPLSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFCYNN 270 (322)
Q Consensus 228 -------------~~~~~~~i~~~l~~~~s~~nP~iY~~~~~~fR~~~~~~~~~~~ 270 (322)
.......+...++++|+++||++|++.+++||+++++++++..
T Consensus 344 ~~~~~~~~~c~~~~l~~~~~vt~~la~~~sclNPiIY~f~~~~FR~~l~~~~~~~~ 399 (417)
T PHA02638 344 FNSIISEHICGFIKLGYAMMLAEAISLTHCCINPLIYTLIGENFRMHLLMIFRNIF 399 (417)
T ss_pred cccccccccccHHHHHHHHHHHHHHHHHHHhhhHHHHHHhCHHHHHHHHHHHHHhc
Confidence 1123455678899999999999999999999999999885543
No 7
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=100.00 E-value=8.5e-34 Score=244.32 Aligned_cols=244 Identities=17% Similarity=0.261 Sum_probs=187.7
Q ss_pred CceeeehhhhHhhhhhccccccccccchhhHHhhhhcccccccceeeeccccchhhhhhhhhhhHHHHHHHHHHhhhhhe
Q psy7555 1 MTTYILDLNTSILLPALCMPITLPNTLPNTYAAVLNKGIIHGSYQRMLIVSGCEIYGFIGGLTGTVSITTLASIALDRYY 80 (322)
Q Consensus 1 ~~~~i~nLai~Dll~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~l~~~~~~~s~~~l~~iaidRy~ 80 (322)
.|+++.|||++|++.++..|....... .++|.+++..|++..++...+..+|++++++||+|||+
T Consensus 74 ~~~ll~~laisDll~~~~~~~~~~~~~---------------~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~iaidRy~ 138 (335)
T PHA03087 74 MDIYLLNLAVSDLLFVMTLPFQIYYYI---------------LFQWSFGEFACKIVSGLYYIGFYNSMNFITVMSVDRYI 138 (335)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHh---------------CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999987776776653221 35788999999999999999999999999999999999
Q ss_pred eeeccCCCCC-ccchhhhhhhhHHHHHHHHHhhccccccccccccCCceecccccccccccc-cchhhhhhhhhhhhhhh
Q psy7555 81 VVVYPLDPLK-TTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVPEGFLTSCSFDYLASDVW-TKGFILTFFCAAWVIPF 158 (322)
Q Consensus 81 ai~~p~~~~~-~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~-~~~~~~~~~~~~~~~p~ 158 (322)
+|++|.+|+. .+.+++..+++++|+++++.++|+.... ....+.....|...+...... .........++.+++|.
T Consensus 139 aI~~p~~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~~--~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~lP~ 216 (335)
T PHA03087 139 AIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILFVY--TTKKDHETLICCMFYNNKTMNWKLFINFEINIIGMLIPL 216 (335)
T ss_pred HhhccCccccccchhhhHHHHHHHHHHHHHHhccHhhee--eeeccCCCceEEecCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 9999999876 8889999999999999999998876662 222233345676665432221 12222334566789999
Q ss_pred hhhHHHHHHHHHHHHHhccccccchHHHhhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHhccc---c-----ccch
Q psy7555 159 FIITFCYVRICMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDYH---Q-----YITP 230 (322)
Q Consensus 159 ~i~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~---~-----~~~~ 230 (322)
+++.++|.++.++++++++ .++++|+.|++..++++|++||+|+.+..++...... . ....
T Consensus 217 ~ii~~~y~~i~~~l~~~~~-----------~~~~~k~~k~l~~iv~~f~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~ 285 (335)
T PHA03087 217 TILLYCYSKILITLKGINK-----------SKKNKKAIKLVLIIVILFVIFWLPFNVSVFVYSLHILHFKSGCKAVKYIQ 285 (335)
T ss_pred HHHHHHHHHHHHHHHhccc-----------chhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHH
Confidence 9999999999998876532 1345688999999999999999999988766543110 0 1112
Q ss_pred hhhHHHHHHHHhhcchhhhhhhccChhHHHHHHHhhccCCCC
Q psy7555 231 LSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFCYNNKK 272 (322)
Q Consensus 231 ~~~~i~~~l~~~~s~~nP~iY~~~~~~fR~~~~~~~~~~~~~ 272 (322)
....+..++..+|+++||+||++++++||+++++.++....+
T Consensus 286 ~~~~i~~~l~~~ns~~NPiIY~~~~~~fr~~~~~~~~~~~~~ 327 (335)
T PHA03087 286 YALHVTEIISLSHCCINPLIYAFVSEFFNKHKKKSLKLMFTS 327 (335)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHcCHHHHHHHHHHHHHHhhc
Confidence 344567789999999999999999999999999988655433
No 8
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.98 E-value=1.2e-32 Score=228.38 Aligned_cols=233 Identities=25% Similarity=0.520 Sum_probs=192.7
Q ss_pred ceeeehhhhHhhhhhc-cccccccccchhhHHhhhhcccccccceeeeccccchhhhhhhhhhhHHHHHHHHHHhhhhhe
Q psy7555 2 TTYILDLNTSILLPAL-CMPITLPNTLPNTYAAVLNKGIIHGSYQRMLIVSGCEIYGFIGGLTGTVSITTLASIALDRYY 80 (322)
Q Consensus 2 ~~~i~nLai~Dll~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~l~~~~~~~s~~~l~~iaidRy~ 80 (322)
|+|++|||++|++.++ ..|....... .+.|..++..|++..++..++..++.++++++++|||+
T Consensus 20 ~~~l~~Lav~Dll~~~~~~~~~~~~~~---------------~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~dRy~ 84 (257)
T PF00001_consen 20 NILLLNLAVADLLVGLFCIPFYIYSLL---------------FDDWIFSSFLCRIFGFLFYFSSFSSIFSLVAISIDRYL 84 (257)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHH---------------HSSCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccccccccc---------------cccccccccccccccccccccccccccccccccccccc
Confidence 6789999999998655 5555544322 25789999999999999999999999999999999999
Q ss_pred eeeccCCCCC-ccchhhhhhhhHHHHHHHHHhhccccccccccccCCceecccccccccccccchhhhhhhhhhhhhhhh
Q psy7555 81 VVVYPLDPLK-TTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVPEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFF 159 (322)
Q Consensus 81 ai~~p~~~~~-~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 159 (322)
+|++|.+|++ .+++++...++++|++++++++|+.+..+......+....|..+..... ...+.....++.+++|++
T Consensus 85 ~i~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~--~~~~~~~~~~~~~~~p~~ 162 (257)
T PF00001_consen 85 AICHPLRYRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVSDGSQSFCFIDFSSSS--SQIYFIYFFIVFFILPLI 162 (257)
T ss_dssp HHHSHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEESTCCCEEEEESCSSSH--HHHHHHHHHHHHTHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccee
Confidence 9999999977 7889999999999999999999997773333333333667877665433 456777888889999999
Q ss_pred hhHHHHHHHHHHHHHhcccccc--chHHHhhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHhccccc-cchhhhHHH
Q psy7555 160 IITFCYVRICMIVIKSGMSASR--HAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDYHQY-ITPLSSMIP 236 (322)
Q Consensus 160 i~~~~y~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~-~~~~~~~i~ 236 (322)
++.++|.++.+.+++++++... .+..+++.++++|.++++++++++|++||+|+.+..++....+... .......+.
T Consensus 163 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~ 242 (257)
T PF00001_consen 163 IILICYIRILRKLRRQRKRIKSQSSSSSRRRSRRERRAARTLLIIVLVFLLCWLPYFILSLLSVFSPSSSLISSILFYIS 242 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHCTCCHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTSTCSHHHHHHHH
T ss_pred eeeeecccccccccccccccccccccccccccccccccccccccccccccccCCceeHHHHHHHHcCccchhhHHHHHHH
Confidence 9999999999999998875433 2456677788999999999999999999999999999888854442 355678889
Q ss_pred HHHHHhhcchhhhhh
Q psy7555 237 ALFCKAASCIDPYIY 251 (322)
Q Consensus 237 ~~l~~~~s~~nP~iY 251 (322)
.++..+|+++||+||
T Consensus 243 ~~l~~~~s~~nP~iY 257 (257)
T PF00001_consen 243 YFLAFLNSCLNPIIY 257 (257)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCcEEC
Confidence 999999999999998
No 9
>KOG2087|consensus
Probab=99.92 E-value=1.3e-26 Score=189.01 Aligned_cols=246 Identities=21% Similarity=0.352 Sum_probs=183.7
Q ss_pred eeeehhhhHhhhhhccccccccccchhhHHhhhhcccccccceeeeccccchhhhhhhhhhhHHHHHHHHHHhhhhheee
Q psy7555 3 TYILDLNTSILLPALCMPITLPNTLPNTYAAVLNKGIIHGSYQRMLIVSGCEIYGFIGGLTGTVSITTLASIALDRYYVV 82 (322)
Q Consensus 3 ~~i~nLai~Dll~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~l~~~~~~~s~~~l~~iaidRy~ai 82 (322)
+++.|||.+|++.++.+......+. ....-+......|. +...|++.||+..++...|+++++.+++||+++|
T Consensus 61 ~li~~la~ad~~mGiYl~~ia~vD~------~~~gey~~~ai~W~-tg~gC~~aGflavFASElSv~~LT~itlEr~l~i 133 (363)
T KOG2087|consen 61 FLICNLAFADLLMGIYLGLIASVDA------KTRGEYYKHAIDWQ-TGLGCPVAGFLAVFASELSVFLLTLITLERWLSI 133 (363)
T ss_pred HHHHHHHHHHHHcchHHHHHHHhhH------HHHHHHHHHHHhhh-hcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhe
Confidence 5789999999997774444333222 11111122223444 5667999999999999999999999999999999
Q ss_pred eccCCCCC-ccchhhhhhhhHHHHHHHHHhhccccccccccccCCceecccccccccccccchhhhhhhhhhhhhhhhhh
Q psy7555 83 VYPLDPLK-TTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVPEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFII 161 (322)
Q Consensus 83 ~~p~~~~~-~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~ 161 (322)
.+|++.++ ...|....+.+..|+.+.+.++.|+++ ...|... ..|..... ++.....|....++....+.++++
T Consensus 134 ~~p~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~g-~s~Y~~~---~vClPL~~-~~~~s~g~y~~~~l~~N~lafiii 208 (363)
T KOG2087|consen 134 TYPFRLDRKAKLRPLVLILLLGWLFAFLMALLPLFG-ISSYGAS---SVCLPLHI-EEPLSTGYYLVALLGLNLLAFIII 208 (363)
T ss_pred eccccCCCcccccHHHHHHHHHHHHHHHHHhccccC-CCCCccc---ceeeeccc-CCccchhHHHHHHHHHHHHHHHHH
Confidence 99999866 555668999999999999999999888 4444333 47865543 222233367777788889999999
Q ss_pred HHHHHHHHHHHHHhccccccchHHHhhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHhccccccchhhhHHHHHHHH
Q psy7555 162 TFCYVRICMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDYHQYITPLSSMIPALFCK 241 (322)
Q Consensus 162 ~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~i~~~l~~ 241 (322)
..+|++++..+++...+... ...+.++-+..++.+-++||.|..+..+...++.+.........+..++.-
T Consensus 209 a~~Y~~iy~~l~~~~~~~~~---------~~~~~akr~a~LvfTd~icw~Pi~f~~~~al~~~~li~~~~sk~llv~flP 279 (363)
T KOG2087|consen 209 AFSYGKIYCSLRKGDLSATL---------ISTSVAKRMAFLVFTDCICWCPIAFFKFSALIGVELISVSYSKWLLVFFLP 279 (363)
T ss_pred HHHhhhhheeeecCCCcccc---------chhhhhhCeeEEEEccccccCchheeeeHHhcCCcccChhhceeEEEEEEE
Confidence 99999999998776442211 114677888889999999999999999888875443333333345556667
Q ss_pred hhcchhhhhhhccChhHHHHHHHhhccC
Q psy7555 242 AASCIDPYIYAITHPRFKRELIKMFCYN 269 (322)
Q Consensus 242 ~~s~~nP~iY~~~~~~fR~~~~~~~~~~ 269 (322)
+|+++||++|.++++.||+.++.+..+.
T Consensus 280 lns~~NP~LYa~fT~~fk~d~~~l~~k~ 307 (363)
T KOG2087|consen 280 LNSCLNPFLYAFFTPVFKEDLFLLLSKV 307 (363)
T ss_pred cccccCchhHHHcCHHHHHHHHHHHhhc
Confidence 9999999999999999999998876543
No 10
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.79 E-value=6.1e-19 Score=145.25 Aligned_cols=230 Identities=16% Similarity=0.233 Sum_probs=154.2
Q ss_pred CceeeehhhhHhhhhhc-cccccccccchhhHHhhhhcccccccceeeeccccchhhhhhhhhhhHHHHHHHHHHhhhhh
Q psy7555 1 MTTYILDLNTSILLPAL-CMPITLPNTLPNTYAAVLNKGIIHGSYQRMLIVSGCEIYGFIGGLTGTVSITTLASIALDRY 79 (322)
Q Consensus 1 ~~~~i~nLai~Dll~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~l~~~~~~~s~~~l~~iaidRy 79 (322)
+++++..+|++|++.+. .+|.... .+ +.-......|-.+.+...++..++...+.+|++||+
T Consensus 25 ~~~li~~~~~~d~~~~~~~~~~~~~-~~----------------~~~~i~~~~Cf~~~~~~~f~~~~qs~~~l~i~iDr~ 87 (257)
T PF10320_consen 25 CYILICILCFADLICLLGTLPFMLF-LF----------------RDHQITRSECFWQIFFYIFFQCAQSVIMLAIAIDRL 87 (257)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHH-HH----------------hheeccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 35788999999998766 4554442 11 122345667999999999999999999999999999
Q ss_pred eeeeccCCCCC-ccchhhhhhhhHHHHHHHHHhhccccccccccccCCceecccccccccccccchhhhhhhhhhhhhhh
Q psy7555 80 YVVVYPLDPLK-TTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVPEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPF 158 (322)
Q Consensus 80 ~ai~~p~~~~~-~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~p~ 158 (322)
+||+.|.+|+. .+.+..........+.+......... +..++....|.....-.+.....+... .. +.-
T Consensus 88 iaV~~P~~Y~~~~~~~y~~~~~~~~~~~s~~~~~~~~~-----~~~~~~~~~C~pp~a~~~~~~~~~~~~----~~-~in 157 (257)
T PF10320_consen 88 IAVCFPLRYRTISTRKYLIILLIFPVIYSIFFTVIGFL-----YRDDETIVICNPPLAFHGTASQIWSYS----NI-IIN 157 (257)
T ss_pred eeEeehhhhhhcccccchhhHhHHHHHHHHHHHhheeE-----ecCCcccccCCCccccCccHHHHHHHH----HH-HHH
Confidence 99999999988 55554444444444555544332222 223334567876544333222222211 11 222
Q ss_pred hhhHHHHHHHHHHHHHhccccccchHHHhhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHh-ccccccchhhhHHHH
Q psy7555 159 FIITFCYVRICMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIF-DYHQYITPLSSMIPA 237 (322)
Q Consensus 159 ~i~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~-~~~~~~~~~~~~i~~ 237 (322)
+++++.|......+++++++ +.++++|..|.+...++.|+++|.-..+...+... +........+.....
T Consensus 158 v~tvivY~i~~~~~~~k~~~---------~~~~~~kv~ksL~v~v~i~i~~w~~s~~~~~v~~~~~~~~~~~~~i~~~~~ 228 (257)
T PF10320_consen 158 VITVIVYIITIIIFKRKSRS---------NSSRSKKVFKSLKVTVIIFIFSWFLSQIINTVSLALGLDGETIAIIQMYAG 228 (257)
T ss_pred HHHHHHHHHHHHHHHHHccc---------cchhHHHHHHHhhhheeeeeHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 34456666666666665442 33456788899999999999999877766655443 222333334666678
Q ss_pred HHHHhhcchhhhhhhccChhHHHHHHHhh
Q psy7555 238 LFCKAASCIDPYIYAITHPRFKRELIKMF 266 (322)
Q Consensus 238 ~l~~~~s~~nP~iY~~~~~~fR~~~~~~~ 266 (322)
++...+.+.|.+||.++|+|||+++++++
T Consensus 229 i~v~~~~s~~ffV~~~~S~EYR~af~~~~ 257 (257)
T PF10320_consen 229 IFVNISYSQNFFVYYWRSSEYRKAFRELF 257 (257)
T ss_pred HHHHHHHHHHheEEEEcCHHHHHHHHHhC
Confidence 99999999999999999999999999874
No 11
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=99.78 E-value=7.3e-19 Score=150.34 Aligned_cols=257 Identities=15% Similarity=0.127 Sum_probs=178.6
Q ss_pred CceeeehhhhHhhhhhc-cccccccccchhhHHhhhhcccccccc----eeeeccccchhhhhhhhhhhHHHHHHHHHHh
Q psy7555 1 MTTYILDLNTSILLPAL-CMPITLPNTLPNTYAAVLNKGIIHGSY----QRMLIVSGCEIYGFIGGLTGTVSITTLASIA 75 (322)
Q Consensus 1 ~~~~i~nLai~Dll~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~C~~~~~l~~~~~~~s~~~l~~ia 75 (322)
+|+++..+|++|++..+ .++........+ + ...+ ..........+...+...+..+|.|..++||
T Consensus 31 in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~-~---------~~~~C~~~~sy~~~~~~~~~~~l~~~~~~~S~WL~V~mA 100 (318)
T PF10324_consen 31 INILLIGIAICDLLYMLSILIWELFFFIIF-Y---------EDDECIPPYSYFWAYFKLIMESLSDIFRRISIWLGVLMA 100 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-c---------cccCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999998654 555555332210 0 0001 1111122234456788889999999999999
Q ss_pred hhhheeeeccCCCC--C-ccchhhhhhhhHHHHHHHHHhhcccccccccccc--CCceecccccccc--cccc-------
Q psy7555 76 LDRYYVVVYPLDPL--K-TTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVP--EGFLTSCSFDYLA--SDVW------- 141 (322)
Q Consensus 76 idRy~ai~~p~~~~--~-~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~--~~~~~~C~~~~~~--~~~~------- 141 (322)
+.|++++.+|.+.+ + .+++.+...+.++++++.+...+..+........ ......|...... .+.+
T Consensus 101 ~iR~l~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~~~~~~~~p~~~C~~~~~~~~~~~Y~~~~~~~ 180 (318)
T PF10324_consen 101 LIRYLSIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIVEVSDPWVPPPNCSGFPENYTFPRYMLNISEL 180 (318)
T ss_pred HHHHHHHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEEeccccccCCCceeeccccccccccchhhhhh
Confidence 99999999999863 3 5677788888888999999888877653222111 1223457511100 0000
Q ss_pred --------cchhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccchHHHhhhhhhhhhhhhHHHHHHHHHHhhhhH
Q psy7555 142 --------TKGFILTFFCAAWVIPFFIITFCYVRICMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPY 213 (322)
Q Consensus 142 --------~~~~~~~~~~~~~~~p~~i~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~ 213 (322)
...+.....++.-++|.++..+....+.+.+|+.++++++..+++ .+++.+++++++.+++.|+++-+|.
T Consensus 181 ~~~~~~~~~~~~~~~~gi~~kiiP~il~~ilti~Li~~Lrk~~~~r~~~~~~~--~~~~~~tt~li~~~ti~f~i~e~p~ 258 (318)
T PF10324_consen 181 FTENDCLFFRIYFFIDGIFFKIIPCILLPILTILLIIELRKAKKRRKKLSSSK--SKKSDRTTKLILFMTISFLISELPQ 258 (318)
T ss_pred hhhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHhccHhhhcccccc--cccccchHHHHHHHHHHHHHHHHHH
Confidence 011222233444789999999999999999998887655544222 5677889999999999999999999
Q ss_pred HHHHHHHHhcccc----ccchhhhHHHHHHHHhhcchhhhhhhccChhHHHHHHHhhccC
Q psy7555 214 ATIALMGIFDYHQ----YITPLSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFCYN 269 (322)
Q Consensus 214 ~i~~~~~~~~~~~----~~~~~~~~i~~~l~~~~s~~nP~iY~~~~~~fR~~~~~~~~~~ 269 (322)
.+..++..+.... ........+...+..+|+..|++||++++.+||+++|++++|+
T Consensus 259 gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~h~~ic~~mSsqYR~t~~~~f~~k 318 (318)
T PF10324_consen 259 GIIFLLESFFEEDSGLIFIIIQLSIIFNILITINSSIHFFICCFMSSQYRKTVKKLFGCK 318 (318)
T ss_pred HHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHHhccC
Confidence 9999997752221 2223456678889999999999999999999999999999875
No 12
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.66 E-value=3.8e-16 Score=130.33 Aligned_cols=207 Identities=15% Similarity=0.209 Sum_probs=143.3
Q ss_pred chhhhhhhhhhhHHHHHHHHHHhhhhheeeeccC-CCCC-ccchhhhhhhhHHHHHHHHHhhccccccccccccCCceec
Q psy7555 53 CEIYGFIGGLTGTVSITTLASIALDRYYVVVYPL-DPLK-TTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVPEGFLTS 130 (322)
Q Consensus 53 C~~~~~l~~~~~~~s~~~l~~iaidRy~ai~~p~-~~~~-~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (322)
-++.....+..........+++|++||.||++|. ++++ .++.+...++++-|+.++++++|.+......+...++
T Consensus 75 ~~~~~~~~y~~~~~~~~gi~lls~nR~~ai~~P~~~~~~~~~~~~~~~i~~i~wi~p~li~~~~~~~~~~~f~~~~~--- 151 (283)
T PF10323_consen 75 AAIYYNIAYYFLYIQCIGIVLLSLNRYLAICFPTSRHTKFWQPAKIWIIILIQWIPPLLISLPFFFDTDFYFDNEEN--- 151 (283)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhheEEeecHHHhhhccccchhheeeeeehhhhhheeeeeccCceeeecccc---
Confidence 4556667777788889999999999999999999 6655 8999999999999999999999966653444444333
Q ss_pred ccccccccccccchhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccchHHHhhhhhhhhhhhhHHHHHHHHHHhh
Q psy7555 131 CSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYVRICMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISW 210 (322)
Q Consensus 131 C~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 210 (322)
.....+.. ..............+..+..+++|..++..+||+.+ .+++...++.++|.+.+.+..+....+++..
T Consensus 152 --~~~~~d~~-~~~~~~~~~~~~~~~~cv~~iv~Y~~i~~~iRk~~k--~~s~~~s~~~~rE~~L~~~~~i~~~a~~~~~ 226 (283)
T PF10323_consen 152 --MSLFVDPE-FIQRNFLIAFIFVSVTCVICIVCYGIIFIFIRKRNK--KKSKSSSRSRRREIRLAIQVFILFCAFFVIL 226 (283)
T ss_pred --eeeecCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhHhhhhhhhHhHHHHHHHHHHHHHHHHHH
Confidence 11111111 122222333444555667788999999999998875 3444456777888888888877776655543
Q ss_pred hhHHHHHHHHHhccccccchhhhHHHHHHHHhhcchhhhhhhccChhHHHHHHHhhcc
Q psy7555 211 TPYATIALMGIFDYHQYITPLSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFCY 268 (322)
Q Consensus 211 ~P~~i~~~~~~~~~~~~~~~~~~~i~~~l~~~~s~~nP~iY~~~~~~fR~~~~~~~~~ 268 (322)
. +.+...................+-..+..+.|.+||+.-...|+++|+++++.++|
T Consensus 227 ~-~~~~~~~~~~~~~~~~~~~~r~~y~~~~~~~s~inP~~LLi~n~~lr~~~~~~~~~ 283 (283)
T PF10323_consen 227 V-YYIFSNYFAQNFNTDPIFYLRAFYPILNGLLSFINPWMLLIFNKDLRKQVRRMLKC 283 (283)
T ss_pred H-HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhHHhhhccHHHHHHHHHHcCC
Confidence 3 33333332222111112233346677888899999999999999999999998876
No 13
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.62 E-value=5.6e-15 Score=123.47 Aligned_cols=236 Identities=17% Similarity=0.203 Sum_probs=154.7
Q ss_pred ceeeehhhhHhhhhhc-----cccccccccchhhHHhhhhcccccccceeeeccc-cchhhhhhhhhhhHHHHHHHHHHh
Q psy7555 2 TTYILDLNTSILLPAL-----CMPITLPNTLPNTYAAVLNKGIIHGSYQRMLIVS-GCEIYGFIGGLTGTVSITTLASIA 75 (322)
Q Consensus 2 ~~~i~nLai~Dll~~~-----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~C~~~~~l~~~~~~~s~~~l~~ia 75 (322)
+++-.+.|++|.+.++ ..|..+...- ...+. .-.+.+.....+...+.++-.+||
T Consensus 29 ~~l~~~~a~~n~i~~~~~l~~~~P~~~~~~~-------------------~~~~~~~s~~~g~~~~~~y~~~~~~~~lia 89 (274)
T PF10328_consen 29 GILCASQAIANIIICLIFLFWVVPMTLLDIS-------------------FLPSSLNSIIFGFIGMFCYFIGPLSHLLIA 89 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-------------------cCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788999976433 3354443211 11121 233448888999999999999999
Q ss_pred hhhheeeeccCCCCC-ccchhhhhhhhHHHHHHHHHhhccccccccccccCCceecccccccccccccchhhhhhhhhhh
Q psy7555 76 LDRYYVVVYPLDPLK-TTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVPEGFLTSCSFDYLASDVWTKGFILTFFCAAW 154 (322)
Q Consensus 76 idRy~ai~~p~~~~~-~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~ 154 (322)
++|++||..|.+|++ .+.+.+..++++.|++++....+......-.+..+.+. .-+. . ++++.-..+.........
T Consensus 90 iNRf~ai~fP~~y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~~~~C~~~y~~~~-~~~~-~-~~~~~C~~~~~~~~~~~~ 166 (274)
T PF10328_consen 90 INRFCAIFFPFKYKKIFSFKNTIILIAFIWLLSIIISTILYFPDGCYFYYDPET-WSWS-Y-PTDPPCGNYSWYFDFYKN 166 (274)
T ss_pred HHHHheeeeHHHHHhHcCccceehhhhHHHHHHHHHHHHhhhcCCCcceeccce-eeee-c-CCCCccchhhhHHHHHHH
Confidence 999999999999987 89999999999999999977766554311111112111 1111 0 111011112222223333
Q ss_pred hhhhhhhHHHHHHHHHHHHHhcccc-ccchHHHhhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHhccccccchhhh
Q psy7555 155 VIPFFIITFCYVRICMIVIKSGMSA-SRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDYHQYITPLSS 233 (322)
Q Consensus 155 ~~p~~i~~~~y~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~ 233 (322)
..-.+++..++..++.++++.+++. ...+..++++++|.+..+..+...+.|++.++-+.+..-+. ...+..
T Consensus 167 ~~~~~~~~~lni~t~ikl~~~~~~~~~~~~~s~~r~rke~~f~~Qs~~Q~~~~~i~~~~~~~~~~~~-------~~~~~~ 239 (274)
T PF10328_consen 167 FILVIISNILNIITFIKLRKFRKKISVSSSESKKRRRKEIRFFIQSFIQDLLYLIDLIFYFFIPPLS-------SNRWWQ 239 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cccHHH
Confidence 3445666677788888887776655 44455677888999999999999999998887776653321 123333
Q ss_pred HH-HHHHHHhhcchhhhhhhccChhHHHHHHHhh
Q psy7555 234 MI-PALFCKAASCIDPYIYAITHPRFKRELIKMF 266 (322)
Q Consensus 234 ~i-~~~l~~~~s~~nP~iY~~~~~~fR~~~~~~~ 266 (322)
.+ ......+..++|++|+..+|+|+|+..++..
T Consensus 240 F~~~t~~w~~~h~~DG~i~l~fN~~~r~~~~~~~ 273 (274)
T PF10328_consen 240 FFCTTFSWVLVHALDGLIMLIFNSEIRRKIRKKK 273 (274)
T ss_pred HHHHHHHHHHHHHhcceeEeEEcHHHHHHHHhcc
Confidence 33 4444566778999999999999999988753
No 14
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=99.34 E-value=7.5e-11 Score=98.36 Aligned_cols=199 Identities=14% Similarity=0.135 Sum_probs=126.3
Q ss_pred eccccchhhhhhhhhhhHHHHHHHHHHhhhhheeeeccCCCCCccchhhhhhhhHHHHHHHHHhhccccccccccccCCc
Q psy7555 48 LIVSGCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLKTTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVPEGF 127 (322)
Q Consensus 48 ~~~~~C~~~~~l~~~~~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~ 127 (322)
.++..|.+++++..++..++.+-.++||++=|+.+++... -.+|.-....+++|.++++.++.++.. ..+.+.
T Consensus 70 ~~s~lC~~Qafliq~f~~as~lWt~~iA~nly~~~~~~~~---~~~k~e~~Y~l~~wGiPli~a~i~l~~--~~~g~~-- 142 (303)
T PF05462_consen 70 ENSFLCQFQAFLIQFFMLASFLWTLCIAFNLYLTFVKRYD---ELEKLEKYYHLVCWGIPLIPAVIPLIG--NDYGPA-- 142 (303)
T ss_pred CCCcchhhHhHHHHHhhHHHHHHHHHHHHHhhheeEEcCc---cHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCCCC--
Confidence 3477899999999999999999999999999999987533 234555678899999999988876654 333333
Q ss_pred eecccccccccccccchhhhhhhhhhhhhhhhhhH----HHHHHHHHHHHHhccccccchHHHhhhhhhhhhhhhHHHHH
Q psy7555 128 LTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIIT----FCYVRICMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVI 203 (322)
Q Consensus 128 ~~~C~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~----~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 203 (322)
...|+.....+ .+.+ ..+..|+.++. +.+....+...+..+. ..++.++ +..+....+..-.
T Consensus 143 G~WCWI~~~~~-----~~r~----~lfY~Pl~ii~~~~~ilv~i~~~~~y~~~~~-~~sd~~~----~~~~~~~kL~~Yp 208 (303)
T PF05462_consen 143 GNWCWIKPEWD-----VWRF----ALFYIPLWIIIIISAILVGITMRYIYRVIRN-GVSDNKD----KHLKYQLKLVNYP 208 (303)
T ss_pred CCceeecCCCc-----chHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-ccchhHH----HHHHHHHHHHHHH
Confidence 34898753211 1111 12223322211 1111111111111111 1111111 1122223355678
Q ss_pred HHHHHhhhhHHHHHHHHHhccccccchhhhHHHHHHHHhhcchhhhhhhccChhHHHHHHHhhccCC
Q psy7555 204 GLWFISWTPYATIALMGIFDYHQYITPLSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFCYNN 270 (322)
Q Consensus 204 ~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~i~~~l~~~~s~~nP~iY~~~~~~fR~~~~~~~~~~~ 270 (322)
++|++||.|..+..+.+.++. .+.++..+-..++-+...+|.++|++.++-.++-+...+++..
T Consensus 209 ~ifiicw~fa~INRI~~~~~~---~~~~l~~Lh~~~s~lqGf~nsivy~~n~~~~~~~~~~~~~~~~ 272 (303)
T PF05462_consen 209 LIFIICWIFATINRIYNFIGK---NPFWLSVLHVGFSPLQGFFNSIVYGYNNSLMWRYLGSKILCQF 272 (303)
T ss_pred HHHHHHHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 889999999999999987752 2345555666777788999999999999988888877665544
No 15
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=99.34 E-value=1e-11 Score=104.58 Aligned_cols=218 Identities=10% Similarity=0.101 Sum_probs=141.7
Q ss_pred eccccchhhhhhhhhhhHHHHHHHHHHhhhhheeeeccCCC--CCc--cc-hhhhhhhhHHHHHHH--HHhhcccccccc
Q psy7555 48 LIVSGCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDP--LKT--TR-NRSRLWILFLWLYGS--FFASLPLVSSKF 120 (322)
Q Consensus 48 ~~~~~C~~~~~l~~~~~~~s~~~l~~iaidRy~ai~~p~~~--~~~--~~-~~~~~~i~~~w~~~~--~~~~~~~~~~~~ 120 (322)
..+..++...++..+....|.|..+++++--++-|...-+. .+. +- +.....+.+.+++++ ....|.......
T Consensus 77 ~~~~~~~~~~~~~~f~~~~s~W~tt~LsvfYcvKI~~fs~~~Fl~LK~rI~~~v~~lLl~s~l~s~~~~~~~~~~~~~~~ 156 (303)
T PF05296_consen 77 FSENVYKIIDFLWMFSNSSSLWFTTWLSVFYCVKIANFSHPFFLWLKRRISKVVPWLLLGSLLISFLNLLSIPLFIDNHI 156 (303)
T ss_pred hhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHheeeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeee
Confidence 34567889999999999999999999999999999876553 111 11 222245566677777 333443222111
Q ss_pred ccccCCceecccccccccccccchhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccchH--HHhhhhhhhhhhhh
Q psy7555 121 RYVPEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYVRICMIVIKSGMSASRHAA--EQKKRNIEIRLCIV 198 (322)
Q Consensus 121 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~y~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 198 (322)
........+...... ..+.....+......++..+|++++.++...+...++||.|+.+++.. ++.+.+.+.|+.|+
T Consensus 157 ~~~~~~~~~N~t~~~-~~~~~~~~~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n~~g~~~ps~~aH~~a~k~ 235 (303)
T PF05296_consen 157 NNNNTNNSRNSTSNF-QESKSSYFYFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQKNATGFRDPSTEAHIRAIKT 235 (303)
T ss_pred ccccccCCCcceEEe-ecchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHHHHHH
Confidence 111111111111111 111122233344445888999999999999999999999886554432 34566778889999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHhccccccchhhhHHHHHHHHhhcchhhhhhhccChhHHHHHHHhhccCC
Q psy7555 199 AMGVIGLWFISWTPYATIALMGIFDYHQYITPLSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFCYNN 270 (322)
Q Consensus 199 ~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~i~~~l~~~~s~~nP~iY~~~~~~fR~~~~~~~~~~~ 270 (322)
+....+.|+++++-..+....... ........+...+..+.+...|++-.+.|+++|+++++++++.|
T Consensus 236 ~~sfl~ly~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~yps~hs~iLIlgn~KLr~~~~~il~~~k 303 (303)
T PF05296_consen 236 MISFLILYIIYFLSLILSFLSFFF----PENSIWFWVCEIIIALYPSGHSIILILGNPKLRQALLKILWCLK 303 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----ccccHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcC
Confidence 998888887755433322221212 22334556778899999999999999999999999999998754
No 16
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.25 E-value=1.6e-10 Score=97.02 Aligned_cols=199 Identities=15% Similarity=0.174 Sum_probs=124.8
Q ss_pred hhhhhhhhhHHHHHHHHHHhhhhheeeeccCCCCC-ccchhhhhhhhH--HHHHHHHHhhccccccccccccCCceeccc
Q psy7555 56 YGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLK-TTRNRSRLWILF--LWLYGSFFASLPLVSSKFRYVPEGFLTSCS 132 (322)
Q Consensus 56 ~~~l~~~~~~~s~~~l~~iaidRy~ai~~p~~~~~-~~~~~~~~~i~~--~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~ 132 (322)
.|.+...+..++......++++|..-+..|..... +..++....+.+ +|.+-..+..+|..+ ...+.. -.
T Consensus 109 ~G~~~~~~W~~~c~~~i~LainR~~~l~~~~~~~~~F~g~~~~~~l~~~~iY~~y~~~fT~pv~F-ns~~~s------w~ 181 (313)
T PF10321_consen 109 MGCIALGSWCGSCIICILLAINRCCELNFPFKLKFLFEGKRTYIVLFLPIIYGFYFSFFTPPVLF-NSEYMS------WF 181 (313)
T ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHhcchhhHHhhcCceEEeeehhHHHHHHHHHHHcCcccC-CCCcce------Ee
Confidence 35566677788889999999999999998877655 566665544433 333333323344444 111110 11
Q ss_pred ccccc-cccccchhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccchHHHhhhhhhhhhhhhHHHHHHHHHHhhh
Q psy7555 133 FDYLA-SDVWTKGFILTFFCAAWVIPFFIITFCYVRICMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWT 211 (322)
Q Consensus 133 ~~~~~-~~~~~~~~~~~~~~~~~~~p~~i~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 211 (322)
.|... ++.....|......+..++-.+.+..+|..+...++++.+... ..+..+.+++......++.....+.++
T Consensus 182 fDP~i~~g~~~~~Y~N~~~~~nN~~~~~~t~~lY~~l~~~l~~k~~~~~----s~~~~k~~~qI~iQs~iIC~f~~i~a~ 257 (313)
T PF10321_consen 182 FDPMIFEGKSPELYSNIPHTFNNIIVVICTTFLYIYLCYYLIKKSKYST----SSQLSKAQRQIFIQSVIICFFHAIAAV 257 (313)
T ss_pred cCccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----chhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 11101 0111222344444444555577888899999999988866442 334445566666666666655555433
Q ss_pred hHHHHHHHHHhccccccchhhhHHHHHHHHhhcchhhhhhhccChhHHHHHHHhhccCCCC
Q psy7555 212 PYATIALMGIFDYHQYITPLSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFCYNNKK 272 (322)
Q Consensus 212 P~~i~~~~~~~~~~~~~~~~~~~i~~~l~~~~s~~nP~iY~~~~~~fR~~~~~~~~~~~~~ 272 (322)
-|.. +. .-..++++..+.+....+++..+|+||...||..|++++++++.++.+
T Consensus 258 iyv~---m~----f~~~p~~~i~~~~~~Wql~~g~~~iIYl~lNrtIR~~~~k~~~~k~~r 311 (313)
T PF10321_consen 258 IYVY---MQ----FFPPPPWLIIIGQISWQLSHGCPPIIYLTLNRTIRNSVLKMLGPKKIR 311 (313)
T ss_pred HHHe---ee----eecccHHHHHHHHHHHhccCCccceEEEEECHHHHHHHHHHHcccccc
Confidence 3322 12 124566788888999999999999999999999999999999866544
No 17
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=99.18 E-value=2.9e-11 Score=98.08 Aligned_cols=239 Identities=13% Similarity=0.094 Sum_probs=156.8
Q ss_pred ceeeehhhhHhhhhhc--cccccccccchhhHHhhhhcccccccceeeeccccchhhhhhhhhhhHHHHHHHHHHhhhhh
Q psy7555 2 TTYILDLNTSILLPAL--CMPITLPNTLPNTYAAVLNKGIIHGSYQRMLIVSGCEIYGFIGGLTGTVSITTLASIALDRY 79 (322)
Q Consensus 2 ~~~i~nLai~Dll~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~l~~~~~~~s~~~l~~iaidRy 79 (322)
|.-+.+||+++++.++ .+|-..... +.-.+++..|++..++.-++...|+.+.+++++-+-
T Consensus 12 dlIl~hLa~aN~lvLl~rGip~~~~~~-----------------~~~~~~d~gCK~v~Y~~RV~RglSictTCLLSvfQA 74 (265)
T PF03402_consen 12 DLILIHLALANILVLLSRGIPQTMAFF-----------------GWKFFDDIGCKIVFYIYRVARGLSICTTCLLSVFQA 74 (265)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHh-----------------hcccCCCceeeeeeeehHHhchhhHHhhhHHHHHhh
Confidence 5567899999988766 566443321 112358899999999999999999999999999776
Q ss_pred eeeeccCCC-CC---ccchhhhhhhhHHHHHHHHHhhccccccccc--cccC---Cceecccccccccccccchhhhhhh
Q psy7555 80 YVVVYPLDP-LK---TTRNRSRLWILFLWLYGSFFASLPLVSSKFR--YVPE---GFLTSCSFDYLASDVWTKGFILTFF 150 (322)
Q Consensus 80 ~ai~~p~~~-~~---~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~--~~~~---~~~~~C~~~~~~~~~~~~~~~~~~~ 150 (322)
+.|.-.... .+ ..++.....+...|++.+++........... .... .....|........ ....+..+ .
T Consensus 75 ItISP~~s~w~~lK~k~pk~i~~~~~~~Wilnlli~~~~~~~~~~~~n~t~~~~~~~~~yCs~~~~~~~-~~~~~~~~-~ 152 (265)
T PF03402_consen 75 ITISPSNSRWAELKVKAPKYIGPSCLFCWILNLLININVLVYIIATPNSTNNNFTYSLGYCSSVPISYI-VSSLFATL-L 152 (265)
T ss_pred EEEecCCchhhhhhhhcCCccccHHHHHHHHHHhhhcceeEEEEecCccccCceeecCCeEEEEecchh-hhhhhhhH-H
Confidence 666533221 11 3455566677888999888775433321111 1111 12345754322111 11112212 2
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhccccccc--hHHHhhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHhcccccc
Q psy7555 151 CAAWVIPFFIITFCYVRICMIVIKSGMSASRH--AAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDYHQYI 228 (322)
Q Consensus 151 ~~~~~~p~~i~~~~y~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~ 228 (322)
.+-=++.+.+|......|...+.||+++.+.- .....+...|.|+++++++++.+|+..+....++....... ..
T Consensus 153 ~~~D~~fvgLM~~aSgyMV~~L~RH~q~VqhIhs~~~s~r~SpE~RAtktILlLVs~FV~fY~l~si~~~~~~~~--~~- 229 (265)
T PF03402_consen 153 SFRDVLFVGLMIWASGYMVFLLYRHHQQVQHIHSSSLSPRSSPETRATKTILLLVSTFVSFYGLSSILFIYLTSF--KN- 229 (265)
T ss_pred HhhHHHHHHHHHhhhhhheeeeeecccccccCcCCCCCCCCChhHHHhCeEeeHHHHHHHHHhHHHHHHHHHHHh--cC-
Confidence 22234556778888888888888887754432 22334557899999999999999999998887765543332 11
Q ss_pred chhhhHHHHHHHHhhcchhhhhhhccChhHHHHH
Q psy7555 229 TPLSSMIPALFCKAASCIDPYIYAITHPRFKREL 262 (322)
Q Consensus 229 ~~~~~~i~~~l~~~~s~~nP~iY~~~~~~fR~~~ 262 (322)
.+++..+..+++...+++-|++....+++..+-+
T Consensus 230 ~~~~~~~~~~ls~cfptisPfvLI~~d~~i~~~~ 263 (265)
T PF03402_consen 230 SPWLLNISVFLSSCFPTISPFVLISSDKRIIKFL 263 (265)
T ss_pred CcceeEHHHHHhHHhHhhChHHhhccCchHHHHh
Confidence 2344567788999999999999999999887754
No 18
>KOG4193|consensus
Probab=98.92 E-value=5e-08 Score=88.67 Aligned_cols=200 Identities=12% Similarity=0.161 Sum_probs=124.7
Q ss_pred cchhhhhhhhhhhHHHHHHHHHHhhhhheeeeccCCCCCccchhhhhhhhHHHHHHHHHhhccccccccccccCCceecc
Q psy7555 52 GCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLKTTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVPEGFLTSC 131 (322)
Q Consensus 52 ~C~~~~~l~~~~~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C 131 (322)
.|....++..++..+...-+.+++++-|..++.-... ...++.....++.|..++++...........+......+.|
T Consensus 385 ~C~~~a~llhff~LaaF~Wm~leg~hl~~~~v~vf~~--~~~~~~l~~~~~gwg~Pavvv~Isa~~~~~~~~~~~~~~~C 462 (610)
T KOG4193|consen 385 LCIAAAILLHFFFLAAFFWMLLEGFHLYLLLVEVFRS--RPRRRKLLYSLYGWGVPAVVVGVSALVDPDLEGQYGTPRVC 462 (610)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccchHHHHHHHHHhhhhHHHHhheeEEeccCccccccCCce
Confidence 6999999999999999999999999999944432221 34455555557999999998887766634443233334459
Q ss_pred cccccccccccchhhhhhhhhhhhhhhhhhHHHHHHHH----HHHHHhccccccchHHHhhhhhhhhhhhhHHHHHHHHH
Q psy7555 132 SFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYVRIC----MIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWF 207 (322)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~y~~i~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~ 207 (322)
+.+......+ . |+-|+.+++.+++.++ +++.++........ ++....+..+..+.+..+.-
T Consensus 463 Wl~~~~~~~~----~-------F~GPv~~ii~~Ni~~Fv~t~~~l~~~~~~~~~~~----~~~~~~~~~~~~l~L~~lLG 527 (610)
T KOG4193|consen 463 WLDTQNGFIW----S-------FLGPVTLIILVNIVMFVVTLKKLLRRLSKLQPIA----SKLENISLIRSALALLFLLG 527 (610)
T ss_pred EEecCCceEE----E-------EehHHHHHHHHHHHHHHHHHHHHhhcccccCcch----hhHHHHHHHHHHHHHHHHHH
Confidence 8764322111 1 4455555555553333 23322222111111 11111155666666666666
Q ss_pred HhhhhHHHHHHHHHhccccccchhhhHHHHHHHHhhcchhhhhhhccChhHHHHHHHhhccCCCCCCC
Q psy7555 208 ISWTPYATIALMGIFDYHQYITPLSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFCYNNKKDLT 275 (322)
Q Consensus 208 ~~~~P~~i~~~~~~~~~~~~~~~~~~~i~~~l~~~~s~~nP~iY~~~~~~fR~~~~~~~~~~~~~~~~ 275 (322)
+.|. +.++.... .....+.++..++..++..+=.+.|++++++.|++.++.+||.+.....
T Consensus 528 lTW~----fgi~s~~~---~~~~v~~YlFti~NalQG~fIFi~~cll~~kvr~~~~k~~~~~~~~~~~ 588 (610)
T KOG4193|consen 528 LTWI----FGIFSWLP---GTSVVFAYLFTIFNALQGVFIFIFHCLLRKKVRKEYRKWLCCGRGDSSA 588 (610)
T ss_pred HHHH----HHHHHHhc---ccchHHHHHHHHHHHhhhhHhhHhhhhhhHHHHHHHHHHhcccCCCCCC
Confidence 6663 33333221 1445567777888888888889999999999999999999966555433
No 19
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=98.89 E-value=3e-08 Score=83.64 Aligned_cols=247 Identities=16% Similarity=0.123 Sum_probs=143.6
Q ss_pred eeeehhhhHhhhhhccccccccccchhhHHhhhhcccccccceeeeccccchhhhhhhhhhhHHHHHHHHHHhhhhheee
Q psy7555 3 TYILDLNTSILLPALCMPITLPNTLPNTYAAVLNKGIIHGSYQRMLIVSGCEIYGFIGGLTGTVSITTLASIALDRYYVV 82 (322)
Q Consensus 3 ~~i~nLai~Dll~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~l~~~~~~~s~~~l~~iaidRy~ai 82 (322)
+++.|-|+.|++.++...+...-.++.+. .-.++..|.--.+|...|.....+...+...+.+++.+--..||..+
T Consensus 36 ~~l~~~~~~~~~~~~~~~~~q~R~i~~~~----~~~~~~~GpC~~~~~~~C~~~y~~~~~~~~~s~~~i~~sf~yRy~iL 111 (292)
T PF10317_consen 36 ILLLNTAIFDLISIISAFLTQPRIIPNGT----SIAVISYGPCRYFGPWFCFFCYHIMLHFSIHSGWSIILSFYYRYYIL 111 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCC----cEEEEeeecceecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57889999998754422222211111000 00011122233456778888888888999999999999999999999
Q ss_pred eccCCCCCccchhhhhhhhHHHHHHHHHhhccccccccccccCCceecccccccc--------cc--cccchhhhhhhhh
Q psy7555 83 VYPLDPLKTTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVPEGFLTSCSFDYLA--------SD--VWTKGFILTFFCA 152 (322)
Q Consensus 83 ~~p~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~--------~~--~~~~~~~~~~~~~ 152 (322)
.++.. ++++....+++.+..++.......+........+.....-..+... .+ .....+.......
T Consensus 112 ~~~~~----~~~~~i~~~~l~~~p~~~~~i~~~~~~~~~~~~~~~~~~~~p~y~~~~~~i~G~~~~~~~~~~~~~~~~~~ 187 (292)
T PF10317_consen 112 RNPSP----SRKRIIFICILIYIPSFSMLIFFFFSPTDSEPVEAELNQFHPEYNLENYSISGFSDISSPPSLINILIMTI 187 (292)
T ss_pred cCCCC----chhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHhCcccccccceeeeecchhhHHHHHHHHHHHH
Confidence 87644 4566777777777777777664444311111000001111111100 01 1111122222222
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhccccccchHHHhhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHhccccccchhh
Q psy7555 153 AWVIPFFIITFCYVRICMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDYHQYITPLS 232 (322)
Q Consensus 153 ~~~~p~~i~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~ 232 (322)
......+++.++-.++.+.++++..+ -.++.++..++..+.+.+-...=+++..|.....++..++. ......
T Consensus 188 ~~~~~~i~~~~~R~ki~~~L~~~~~~-----~S~~tk~~h~~lv~~Lt~Q~~lP~~~~~p~~~~~~~~~~~~--~~~~~~ 260 (292)
T PF10317_consen 188 PIFPIPIVIFFLRRKILKFLNKKSSS-----MSERTKSMHRQLVKGLTIQALLPLFFYIPGVIIYFLSQFTG--YEHPFL 260 (292)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhh-----cCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc--cccHHH
Confidence 22222233344444555555543221 12344456677888888888888888888888777776642 335556
Q ss_pred hHHHHHHHHhhcchhhhhhhccChhHHHHHHH
Q psy7555 233 SMIPALFCKAASCIDPYIYAITHPRFKRELIK 264 (322)
Q Consensus 233 ~~i~~~l~~~~s~~nP~iY~~~~~~fR~~~~~ 264 (322)
......+..+.+.+||++...+-+.||++++|
T Consensus 261 e~~~~~~~~~~~~~~P~itl~fv~PYR~~i~r 292 (292)
T PF10317_consen 261 EYLIFMLASLPPLIDPLITLYFVRPYRKAILR 292 (292)
T ss_pred HHHHHHHHHHHHHhchHhheeeeHhHHHHhcC
Confidence 66677788889999999999999999999864
No 20
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=98.84 E-value=1.5e-07 Score=78.55 Aligned_cols=227 Identities=13% Similarity=0.138 Sum_probs=117.1
Q ss_pred eehhhhHhhhhhccccccccccc-hhhHHhhhhcccccccceeeeccccchhhhhhhhhhhHHHHHHHHHHhhhhheeee
Q psy7555 5 ILDLNTSILLPALCMPITLPNTL-PNTYAAVLNKGIIHGSYQRMLIVSGCEIYGFIGGLTGTVSITTLASIALDRYYVVV 83 (322)
Q Consensus 5 i~nLai~Dll~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~l~~~~~~~s~~~l~~iaidRy~ai~ 83 (322)
+..||+||+++++.+-.....++ ..++.. +..-..+.+.|+ ..+|........+++.++.|-+.+-|+|-|+.+.
T Consensus 71 l~~la~aDlLaclGVivRS~vWl~~p~~~~--s~s~~~~~d~wp--~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~ 146 (405)
T PF02101_consen 71 LFWLAVADLLACLGVIVRSSVWLGFPNFID--SISDVNGTDIWP--AAFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIR 146 (405)
T ss_pred HHHHHHHHHHhhhhHHHHhhhhhcCCcccc--cccCCCCCcccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheee
Confidence 56899999997664333222221 000000 000011112233 4689998888889999999999999999999987
Q ss_pred ccCCCCCccchhhhhhhhHHHHHHHHHhhccccccccccccCCceecccccccccccccchhhhhhhhhhhhhhhhhhHH
Q psy7555 84 YPLDPLKTTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVPEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITF 163 (322)
Q Consensus 84 ~p~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~ 163 (322)
+--. .......-+++|..+.+++.--... -|.++. ..|.... + +..-.++..-+-.++-++.--+
T Consensus 147 ~~ag-----~~~~~lYH~~aWgl~~lL~~~Gl~~---Ly~Ps~--~~Ce~~l---~--~alphYvttY~PlllVlvaNPi 211 (405)
T PF02101_consen 147 RSAG-----RSTIWLYHMMAWGLPALLCAEGLAM---LYYPSI--SRCESGL---E--HALPHYVTTYIPLLLVLVANPI 211 (405)
T ss_pred ccCC-----CcchhHHHHHHHHHHHHHHHhccce---eecCCH--Hhhhhhh---h--hcchhHHHHHHHHHHHHHhccH
Confidence 5322 1223456678899988887644332 122222 2463221 1 1111111111112222333334
Q ss_pred HHHHHHHHHHHhccccccchHHHhhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHhcc---cc------cc---chh
Q psy7555 164 CYVRICMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDY---HQ------YI---TPL 231 (322)
Q Consensus 164 ~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~---~~------~~---~~~ 231 (322)
.|.+..+++-..-+.+.. .-.++.++.....-+-.+.+.++|.+||+|..+..++..... .. .. ...
T Consensus 212 Ly~~a~~~V~~~lk~r~g-~yT~~ER~l~~~IK~kFf~I~lVF~iCWlpNIINg~LL~~l~~~~~i~~~sl~~~~~a~~t 290 (405)
T PF02101_consen 212 LYIKAVRAVASLLKGRQG-IYTENERRLGAQIKIKFFKIMLVFYICWLPNIINGSLLFYLEMQPDINGGSLKQVRNAALT 290 (405)
T ss_pred HHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHhhcccccccccccchhhHHHH
Confidence 455555554443332211 112222233334445567788899999999998876543311 10 01 113
Q ss_pred hhHHHHHHHHhhcchhhhhh
Q psy7555 232 SSMIPALFCKAASCIDPYIY 251 (322)
Q Consensus 232 ~~~i~~~l~~~~s~~nP~iY 251 (322)
.+++..++.-++.++|-++|
T Consensus 291 ~W~IMaIlNPlQgfLnsLay 310 (405)
T PF02101_consen 291 TWFIMAILNPLQGFLNSLAY 310 (405)
T ss_pred HHHHHHHHhHHHHHHHHHhh
Confidence 34444445555556777775
No 21
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=98.76 E-value=6.1e-09 Score=88.73 Aligned_cols=212 Identities=18% Similarity=0.182 Sum_probs=133.2
Q ss_pred ceeeeccccchhhhhhhhhhhHHHHHHHHHHhhhhheeeeccCCCCCccchhhhhhhhHHHHHHHHHhhccccccccccc
Q psy7555 44 YQRMLIVSGCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLKTTRNRSRLWILFLWLYGSFFASLPLVSSKFRYV 123 (322)
Q Consensus 44 ~~~~~~~~~C~~~~~l~~~~~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~ 123 (322)
+.+..+....+....+...+...+...++.--+.||.++++|.+.+..+.++...+.+..-+.++.......+.......
T Consensus 73 ~~~~~~~~~~~~l~~~y~~~f~~~~~llaihFiYRY~av~~~~~l~~f~~~~~~~w~~~~~~~~~~W~~~~~~~~~~~~~ 152 (307)
T PF10326_consen 73 GPFFLSKSIGQILLAIYCGCFGMSFSLLAIHFIYRYWAVCRPKKLRYFSGWRFIIWFLIPIIFGIIWFLLVYFFFSPDEE 152 (307)
T ss_pred ccccccchheeehhhhhhhhHHHHHHHHHhHhhhheeeeccchhhccccccceeeeehhhhhhcccceEEEeehhccchh
Confidence 44455666777788888889999999999999999999999998665666666655544444444443333222111110
Q ss_pred cCC------------ceec-------ccc-ccccc--ccccchhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHhcccccc
Q psy7555 124 PEG------------FLTS-------CSF-DYLAS--DVWTKGFILTFFCAAWVIPFFIITFCYVRICMIVIKSGMSASR 181 (322)
Q Consensus 124 ~~~------------~~~~-------C~~-~~~~~--~~~~~~~~~~~~~~~~~~p~~i~~~~y~~i~~~~~~~~~~~~~ 181 (322)
.++ +... -.. +...+ -.+..............+.+.++++|-.++++++++..+..
T Consensus 153 ~~~~lr~~~~~~y~~~i~~~~y~~~~~y~~~~nG~~~~~~~~~~~~~~~~~im~~s~~iii~cg~~~~~~i~~~~~~~-- 230 (307)
T PF10326_consen 153 SDEYLREELLENYGLDIDEIPYVGFVYYPKDENGSKELNWPSFIGMLIMCIIMSISFFIIIYCGIKIYKKIKKLSSIM-- 230 (307)
T ss_pred hhhhhccccccccCCCccceeEEEEEEeeeccCCceeechhhheeeeecchhHHhHHHHHHHHHhhhHHHHhcccccc--
Confidence 000 0000 000 00011 12223344445555667889999999999999995554432
Q ss_pred chHHHhhhhhhhhhhhhHHHHHHH-HHHhhhhHHHHHHHHHhccccccchhhhHHHHHHHHhhcchhhhhhhccChhHHH
Q psy7555 182 HAAEQKKRNIEIRLCIVAMGVIGL-WFISWTPYATIALMGIFDYHQYITPLSSMIPALFCKAASCIDPYIYAITHPRFKR 260 (322)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~i~~~-f~~~~~P~~i~~~~~~~~~~~~~~~~~~~i~~~l~~~~s~~nP~iY~~~~~~fR~ 260 (322)
..+.++-+++..+.+++.++. .++...|..+......++-+ .+....+......+.|++||++-.+.-|+||+
T Consensus 231 ---S~~~~~lq~QLf~aLv~Qt~iP~i~~~~P~~~~~~~p~~~i~---~~~~~~~~~~~~~~yP~iDpl~~i~~ik~yR~ 304 (307)
T PF10326_consen 231 ---SSKTRKLQKQLFKALVIQTIIPFIFMYIPVFIVFILPFFGID---LGFFSNIISILISLYPAIDPLPVIFIIKDYRK 304 (307)
T ss_pred ---ChhhHHHHHHHHHHHHHHhhhhheeeecchhheeeeeccCCC---CCccccHhhhhEEEEeehhhheeeEeeHHHHH
Confidence 122334455666666665554 56667899988887766422 22334456677889999999999999999999
Q ss_pred HHH
Q psy7555 261 ELI 263 (322)
Q Consensus 261 ~~~ 263 (322)
+++
T Consensus 305 ~i~ 307 (307)
T PF10326_consen 305 AIK 307 (307)
T ss_pred hhC
Confidence 874
No 22
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=98.56 E-value=1.1e-07 Score=74.97 Aligned_cols=148 Identities=17% Similarity=0.070 Sum_probs=92.3
Q ss_pred eeehhhhHhhhhhc--cc-cccccccchhhHHhhhhcccccccceeeeccccchhhhhhhhhhhHHHHHHHHHHhhhhhe
Q psy7555 4 YILDLNTSILLPAL--CM-PITLPNTLPNTYAAVLNKGIIHGSYQRMLIVSGCEIYGFIGGLTGTVSITTLASIALDRYY 80 (322)
Q Consensus 4 ~i~nLai~Dll~~~--~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~l~~~~~~~s~~~l~~iaidRy~ 80 (322)
+++||.++|++-.+ .+ |..... ++.-..++..|..+|++..++..++-+...+||++=|+
T Consensus 39 LIl~L~~aD~~qal~~~i~~~~~l~-----------------~~~i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l 101 (201)
T PF11710_consen 39 LILNLLLADFIQALAFLISPIRWLA-----------------RGGIIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFL 101 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-----------------cCCeeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999998544 33 322211 23344567899999999999999999999999999999
Q ss_pred eeeccCCCCC--------ccc--hhhhhhhhHHHHHHHHHhhccccccccccccCCceecccccccccccccchhhhhhh
Q psy7555 81 VVVYPLDPLK--------TTR--NRSRLWILFLWLYGSFFASLPLVSSKFRYVPEGFLTSCSFDYLASDVWTKGFILTFF 150 (322)
Q Consensus 81 ai~~p~~~~~--------~~~--~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~ 150 (322)
.+.+|-..++ ..+ ........+.|++...++. .. .....+.+....|+....... +.....
T Consensus 102 ~v~~~~~~~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~la~---i~-~~~~~Y~~~g~WCWi~~~~~~-----~Rl~l~ 172 (201)
T PF11710_consen 102 IVFRPNWKRKRSKNVEGGLYPYRYWVWVIWILVPLLLASLAF---IG-LGGPGYGPAGAWCWIPSRYEW-----YRLWLH 172 (201)
T ss_pred HHhcCccccccccccccceEEeeeeeehHHHHHHHHHHHHHH---hc-cccCcccccCcEEEECCCcHH-----HHHHHH
Confidence 9999922111 111 1122222244444333332 22 122233445678987654322 233333
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhcc
Q psy7555 151 CAAWVIPFFIITFCYVRICMIVIKSGM 177 (322)
Q Consensus 151 ~~~~~~p~~i~~~~y~~i~~~~~~~~~ 177 (322)
-+...+-.+++++.|..++..+|++.|
T Consensus 173 y~~~~~~~~~~i~iY~~if~~lrr~~~ 199 (201)
T PF11710_consen 173 YIWRFIIIFAIIIIYIAIFFYLRRRIR 199 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 344445577888899999999998765
No 23
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=98.42 E-value=1.9e-06 Score=72.23 Aligned_cols=196 Identities=15% Similarity=0.115 Sum_probs=110.4
Q ss_pred cccchhhhhhhhhhhHHHHHHHHHHhhhhheeeeccCCCCC-ccchhhhhhhhHHHHHHHHHhhccccccccccccCCce
Q psy7555 50 VSGCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLK-TTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVPEGFL 128 (322)
Q Consensus 50 ~~~C~~~~~l~~~~~~~s~~~l~~iaidRy~ai~~p~~~~~-~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 128 (322)
.....+..++...+..+...+.+.++++|+-++..|.++.+ .+ +.....++++.++++....+.... ........+.
T Consensus 78 ~~~l~~~~~l~~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~-~~~~~~i~~i~~~p~~~~~~~~~~-~~~~~~~~~~ 155 (275)
T PF02118_consen 78 PFFLNIFYFLQYYFAYVQYLSTILISLNRFTSVLFPIRYEKFWK-RYYWIIIIIIFLLPFSFTWNIFIS-PTYVVYDNGG 155 (275)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHH-hhhhhheeeeeehhHHHHHHHHcc-ccEEEEECCc
Confidence 44577778888999999999999999999999999999977 44 444445555555555544443333 2222222111
Q ss_pred ecccccccccccccchhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccchHHHhhhhhhhhhhhhHHHHHHHHHH
Q psy7555 129 TSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYVRICMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFI 208 (322)
Q Consensus 129 ~~C~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 208 (322)
..-... ... ............+++..++.++++....+++++.++ +.++.|++..+..+.....+++
T Consensus 156 ~~~~~~--~~~--~~~~~~~~~~~~~i~~~ii~i~~~~~~~~~l~~~~~---------~~~~~er~L~~is~~~~~~~~~ 222 (275)
T PF02118_consen 156 FSYSYN--DTV--SWASLSIFSLIYFIIIIIITIITNIITYRRLRKLSK---------RIKSVERNLTIISFIISFVQLL 222 (275)
T ss_pred eEEEEE--ecc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------hhhHHHHHHHHHHHHHHHHHHH
Confidence 111111 000 111111222333444455566667777777765432 2234567777777777777765
Q ss_pred hhhhHHHHHHHHHhccccccchhhhHHHHHHHHhhcchhhhhhhccChhHHHH
Q psy7555 209 SWTPYATIALMGIFDYHQYITPLSSMIPALFCKAASCIDPYIYAITHPRFKRE 261 (322)
Q Consensus 209 ~~~P~~i~~~~~~~~~~~~~~~~~~~i~~~l~~~~s~~nP~iY~~~~~~fR~~ 261 (322)
.-+...+....... +..........+.....=.-+...|++-..++++.|++
T Consensus 223 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~f~sD~ltl~~P~iLl~fs~~vR~~ 274 (275)
T PF02118_consen 223 IAIWQIINSFAFFF-DFLPISSFLYYLLPFASDLLTLSQPYILLIFSKNVRRQ 274 (275)
T ss_pred HHHHHHHHHHHHhh-ccccHHHHHHHHHHHHHHHHHHHHHHHHheECHhhhcc
Confidence 54444442111111 11112223333333333344667799999999999986
No 24
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=98.42 E-value=1.3e-05 Score=68.59 Aligned_cols=214 Identities=12% Similarity=0.020 Sum_probs=115.8
Q ss_pred eeeccccchhhhhhhhhhhHHHHHHHHHHhhhhheeeeccCCCCCccchhhhhhhhHHHHHHHHHhhccccccccccccC
Q psy7555 46 RMLIVSGCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLKTTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVPE 125 (322)
Q Consensus 46 ~~~~~~~C~~~~~l~~~~~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~ 125 (322)
...+...|.+......++...+..+..++.+||++|..+.-+|.+.++.-...+..+.|++++......... ... ++
T Consensus 89 ~~~~~~~C~~lR~~~~~~~~~~~~t~v~l~IER~iAT~~~~~YE~~~~~~Gi~l~~~qi~is~~~~~~~~~~--~~~-~~ 165 (324)
T PF10292_consen 89 MIPSTYRCFILRIPYNFGLFLVSFTTVSLVIERTIATFFSKSYEKSGKWLGILLAFFQILISLLILYFVYSD--EDF-PN 165 (324)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHhh--hhc-cC
Confidence 344566799999999999999999999999999999999999975444433444455555555543322221 111 24
Q ss_pred CceecccccccccccccchhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHhcccccc-chHHHhhhhhhhhhhhhHHHHHH
Q psy7555 126 GFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYVRICMIVIKSGMSASR-HAAEQKKRNIEIRLCIVAMGVIG 204 (322)
Q Consensus 126 ~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~y~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~ 204 (322)
+....|......... .........++.. ++..+.+..++++-+|.+++... +-.++=+..+..+..+.+..++.
T Consensus 166 ~~~~yC~~~~~~~~~-~~~~~~~~~~~~~----i~~~i~f~~L~~~Nkk~r~~~~~~~LS~RYQl~ENl~slr~L~p~~~ 240 (324)
T PF10292_consen 166 ERMYYCQASSSSSPY-RVNIPFIVILVLQ----ILALILFRYLLRKNKKLRKQQKHSTLSERYQLEENLRSLRLLKPFII 240 (324)
T ss_pred ccceeeEEecCCCch-hhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhccCCCcchHHhHHhHHHHHHHHHHHHH
Confidence 445568665433111 1111111111111 22222233333333332221111 12233344566677777776666
Q ss_pred HHHHhhhhHHHHHHHHHhccccccchhhhHHHH--HHHHhhcchhhhhhhccChhHHHHHHHhhc
Q psy7555 205 LWFISWTPYATIALMGIFDYHQYITPLSSMIPA--LFCKAASCIDPYIYAITHPRFKRELIKMFC 267 (322)
Q Consensus 205 ~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~i~~--~l~~~~s~~nP~iY~~~~~~fR~~~~~~~~ 267 (322)
+..+.-+.+.+..+.......+...+....+.. ...-.++.+-|++.....++.|++.++-+.
T Consensus 241 ~~~i~~~~~~~~~~~~~~~~~~~~~~~y~al~e~~~~~P~Y~ii~~~~~~~~~k~~r~~~~~~l~ 305 (324)
T PF10292_consen 241 LSSIFIFFYIFASIFLRLFNPSMSKPNYFALAELNHIFPLYSIISPLILYRKIKKIRKKRKKRLE 305 (324)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655555555544444332122222222222222 234457788888888888888888766554
No 25
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=98.33 E-value=9.4e-06 Score=68.67 Aligned_cols=202 Identities=13% Similarity=0.015 Sum_probs=126.0
Q ss_pred chhhhhhhhhhhHHHHHHHHHHhhhhheeeeccCCCCCccchhhhhhhhHHHHHHHHHhhcccccccccccc----CCce
Q psy7555 53 CEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLKTTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVP----EGFL 128 (322)
Q Consensus 53 C~~~~~l~~~~~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~----~~~~ 128 (322)
+.....+..+......-.++.--+-|+.+|.+..+.++.++.......+...+.+.............+.+. .++-
T Consensus 90 ~h~~~~i~~~l~~~q~~~L~~CF~~KHQaIa~i~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~eeq~~yI~~ny 169 (303)
T PF10327_consen 90 SHYLMTIWIFLFIFQIESLVICFLRKHQAIARILSKHVLPKWFYIFFYFFCILFPFFIFICFYFSGMSREEQMEYIRENY 169 (303)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcCcHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC
Confidence 444445555666666666666678899999998887656665555555555555555544332221111100 0112
Q ss_pred ecccccccccc-------cccchhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccchHHHhhhhhhhhhhhhHHH
Q psy7555 129 TSCSFDYLASD-------VWTKGFILTFFCAAWVIPFFIITFCYVRICMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMG 201 (322)
Q Consensus 129 ~~C~~~~~~~~-------~~~~~~~~~~~~~~~~~p~~i~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (322)
..|......-+ +...........++......+..+++..+++.+++.+++-+ .+..++++++.+.+++
T Consensus 170 P~~~~~F~~l~nf~iY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~~iS-----~~ty~kHk~av~SLi~ 244 (303)
T PF10327_consen 170 PEYLSWFSSLPNFAIYDFNPWFIFFFILAFFGGFLCFVIFIFLTIDMFRMLKKLKKKIS-----KQTYQKHKEAVRSLIA 244 (303)
T ss_pred CchhHHHhcCCCEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----HHHHHHHHHHHHHHHH
Confidence 23332221111 11122233344445556667777888888888877654322 2455677888899998
Q ss_pred HHHHHHHhhhhHHHHHHHHHhccccccchhhhHHHHHHHHhhcchhhhhhhccChhHHHH
Q psy7555 202 VIGLWFISWTPYATIALMGIFDYHQYITPLSSMIPALFCKAASCIDPYIYAITHPRFKRE 261 (322)
Q Consensus 202 i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~i~~~l~~~~s~~nP~iY~~~~~~fR~~ 261 (322)
-..+-.+|.+|..+........ ......+..+.......+|.+|-++..+.++.||+-
T Consensus 245 Q~~~~~i~~~P~~~~~~~~~~~--~~~~q~i~~~~~~~f~~HS~~n~ivli~t~ppYR~f 302 (303)
T PF10327_consen 245 QFATSSICILPPFIFVVVVIFE--FEDAQVISEICLAIFSSHSSVNMIVLIITTPPYRKF 302 (303)
T ss_pred HHHHHHHHHHHHHHhhhhheec--CCCcHHHHHHHHHHHHHhhHhhheeeeEcCcchhhc
Confidence 8888888889998887666553 233345566677788899999999999999999984
No 26
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=98.27 E-value=4.6e-05 Score=64.81 Aligned_cols=210 Identities=15% Similarity=0.162 Sum_probs=121.6
Q ss_pred cccchhhhhhhhhhhHHHHHHHHHHhhhhheeeeccCCCCCccchhhhhhhhHHHHHHHHHhhccccccccccccC----
Q psy7555 50 VSGCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLKTTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVPE---- 125 (322)
Q Consensus 50 ~~~C~~~~~l~~~~~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~---- 125 (322)
+.-..++.++...+......++..+--+||.++....+ +...++......++.++.+.....|.... ..+.+..
T Consensus 82 gv~~~~q~~i~~~~~~~~~~S~~~lFe~R~~~i~~~~~-~~~~~~~r~~~~~~~y~~~~~~~~~~~~~-~pdQ~~~k~~~ 159 (302)
T PF10318_consen 82 GVPTPIQFYIGVTLLAFVGVSILSLFENRYQIIIRNRS-RSLWKKIRIIFIIFNYIIAFLFFIPIYLS-IPDQEEAKQEV 159 (302)
T ss_pred ccChHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccc-cccchhhHHHHHHHHHHHHHHHHHHHhcC-CccHHHHHHHH
Confidence 34467778888888888888889999999999997655 22233334444455566666666665554 2111110
Q ss_pred Cceecccccc-cc-cc----cccchhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccchHHHhhhhhhhhhhhhH
Q psy7555 126 GFLTSCSFDY-LA-SD----VWTKGFILTFFCAAWVIPFFIITFCYVRICMIVIKSGMSASRHAAEQKKRNIEIRLCIVA 199 (322)
Q Consensus 126 ~~~~~C~~~~-~~-~~----~~~~~~~~~~~~~~~~~p~~i~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (322)
.+...|..+. .. .+ .....+......+..++....+.+....+...++++.+ .+..++.++.++|..+.+
T Consensus 160 ~~~~pc~~~~~~~~~~~fv~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~----~~~S~~T~k~Qkkfl~~l 235 (302)
T PF10318_consen 160 LKKYPCPPPEFFDNPPVFVLSTDSWYILIIIIIFLLIIFIQIIFFAFLIIYYLLKSQK----KTMSKKTRKMQKKFLIAL 235 (302)
T ss_pred HhhccCCchhhcCCCCeEEEcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch----hhhCHHHHHHHHHHHHHH
Confidence 0112232211 01 11 00111222333333333334444444455555555543 122334445566666666
Q ss_pred HHHHHHH-HHhhhhHHHHHHHHHhccccccchhhhHHHHHHHHhhcchhhhhhhccChhHHHHHHHhhcc
Q psy7555 200 MGVIGLW-FISWTPYATIALMGIFDYHQYITPLSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFCY 268 (322)
Q Consensus 200 ~~i~~~f-~~~~~P~~i~~~~~~~~~~~~~~~~~~~i~~~l~~~~s~~nP~iY~~~~~~fR~~~~~~~~~ 268 (322)
.+.+++. ++.-.|..........+ ........+...+...++.+.-++..+.++.+|+.+++++||
T Consensus 236 ~iQ~~ip~~~l~~P~~~~~~~~~~~---~~~q~~~n~~~~~~~~HG~~sti~mi~~~~pYR~~~~~~~~~ 302 (302)
T PF10318_consen 236 IIQVLIPFIFLFIPLIYFIISIIFG---YYNQALNNISFIIISLHGIASTIVMILVHKPYRKFLLSLFRC 302 (302)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcc---ccccccchHHHHHHHhccHHHHHHHhhccHHHHHHHHHHhcC
Confidence 6655553 33346887777666553 233445567778888999999999999999999999999987
No 27
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=98.15 E-value=0.0001 Score=64.27 Aligned_cols=191 Identities=16% Similarity=0.156 Sum_probs=92.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHhhhhheeeeccCCCCCccchhhh-hhhhHHHHHHHHHhhccccccccccccCCceecccc
Q psy7555 55 IYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLKTTRNRSR-LWILFLWLYGSFFASLPLVSSKFRYVPEGFLTSCSF 133 (322)
Q Consensus 55 ~~~~l~~~~~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~-~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 133 (322)
+.+++...........+.++++||.+|-..--.|.+.+++... .++++.-++++..+...... .
T Consensus 125 ~~~~l~~~y~~~~~~~~~~~~iER~~AT~~i~dYEk~~R~~I~~~l~~~~~~~~~~~s~~~~~~------~--------- 189 (365)
T PF03125_consen 125 IGGFLRWHYMFSAIFCLLAIVIERCFATYFIKDYEKKSRRWISILLIIFSQIFSIIFSYFVIFN------I--------- 189 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHH------h---------
Confidence 4455666666677899999999999999999999743333222 22233333333333211111 0
Q ss_pred cccccccccchhhhhhhhhhhhhh---hhhhHHHHHHHHHHHHHhccc-cccchHHHhhhhhhhhhhhh---HHHHHHHH
Q psy7555 134 DYLASDVWTKGFILTFFCAAWVIP---FFIITFCYVRICMIVIKSGMS-ASRHAAEQKKRNIEIRLCIV---AMGVIGLW 206 (322)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~p---~~i~~~~y~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~i~~~f 206 (322)
....+.....++..++. +..+-..+.+..+++++.+++ ..=+-+.+=+.+...|..+. +++.++.+
T Consensus 190 -------~~~~~~~~~~~~~~~~~~~~~~~l~~~N~~~~~~l~~~~~~~~~YSLs~RFQi~ENir~l~l~~~~vi~~~~~ 262 (365)
T PF03125_consen 190 -------IPFIFHVIIFIVSNIISFVLFFILYRYNRKRLKKLENPRRKISKYSLSQRFQIKENIRSLKLLKRVVIVIAFF 262 (365)
T ss_pred -------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCceechhhHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 00011111111111111 122222233444444333221 10011122233333444443 33333333
Q ss_pred HHhhhhHHHHHHHHHhccccccchhhhHHHHHHHHhhcchhhhhhhccChhHHHHHHHhhccCC
Q psy7555 207 FISWTPYATIALMGIFDYHQYITPLSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFCYNN 270 (322)
Q Consensus 207 ~~~~~P~~i~~~~~~~~~~~~~~~~~~~i~~~l~~~~s~~nP~iY~~~~~~fR~~~~~~~~~~~ 270 (322)
.+.-+...+ ...++...........+......+++.+=|.+-....++.|+++++.+...+
T Consensus 263 i~~~~~~~~---~~~~~~~~~~~~~~~~~~e~~i~l~~~~i~~~~i~s~~~wrk~f~~~~~~~~ 323 (365)
T PF03125_consen 263 IILCLIILI---LLSFDLSPSYRTILNHIFENCIFLNPIFICPVIIFSVPSWRKEFKRSFPKIR 323 (365)
T ss_pred HHHHHHHHH---HHHHccChhHHHHHHHHHHHHHHHhhHHHHHHHHHcCHHHHHHHHHhhhhhh
Confidence 332122212 2222111222335556677888888988888888999999999998876543
No 28
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=98.10 E-value=0.00023 Score=57.27 Aligned_cols=202 Identities=16% Similarity=0.209 Sum_probs=126.4
Q ss_pred cccchhhhhhhhhhhHHHHHHHHHHhhhhheeeeccCCCCC-ccchhhhhhhhHHHHHHHHHhhccccccccccccC---
Q psy7555 50 VSGCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLK-TTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVPE--- 125 (322)
Q Consensus 50 ~~~C~~~~~l~~~~~~~s~~~l~~iaidRy~ai~~p~~~~~-~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~--- 125 (322)
+..-.+..++..++.++..+.-..+|++|....-....-.+ ..+.-..++...+|++++......... .-+|.++
T Consensus 87 s~~f~~~Sy~idf~h~siLfsNlviaIqR~fVFFfr~~t~~~F~s~~iyiWL~~vWils~~v~~~l~~~-nC~Y~y~~~~ 165 (305)
T PF04789_consen 87 SELFIFMSYLIDFCHYSILFSNLVIAIQRFFVFFFRNLTDKVFESPVIYIWLLLVWILSIGVVYSLMSN-NCRYRYNKWS 165 (305)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhheeeeehhhhhhhccchHHHHHHHHHHHHHHHHHHHHHhC-CCeeeccccc
Confidence 44456778899999999999999999999988774333233 677788888999999998876654333 3333332
Q ss_pred -Cceecccccccc-cccccchhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccchHHHhhhhhhhhhhhhHHHHH
Q psy7555 126 -GFLTSCSFDYLA-SDVWTKGFILTFFCAAWVIPFFIITFCYVRICMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVI 203 (322)
Q Consensus 126 -~~~~~C~~~~~~-~~~~~~~~~~~~~~~~~~~p~~i~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 203 (322)
.....|...... +.+........-.++.+.+|+++..+ |+.+..++...++. ...+.|.+.+|.-..+.
T Consensus 166 ~~y~L~C~~~~~~v~~~~P~~IqiiE~ilQ~~IPi~Il~i-YiAIIiKI~~MKks--------sLnK~Ei~ILKQAifIF 236 (305)
T PF04789_consen 166 KHYQLNCETCNSVVDISPPRGIQIIEIILQFGIPIFILVI-YIAIIIKIIKMKKS--------SLNKNEITILKQAIFIF 236 (305)
T ss_pred ccEEEEcCCCCeeEeeCCCCchhHHHHHHHHhHHHHHHHH-HHHHHHHHHHHhhc--------cCCchhHHHHHHHHHHH
Confidence 334567554111 11334455667788888899876554 55555554443332 22345778888877766
Q ss_pred HHHHHhhhhHHHHHHHHHhccccccchhhhHHHHHHHHhhcchhhhhhhccChhHHHHHHH
Q psy7555 204 GLWFISWTPYATIALMGIFDYHQYITPLSSMIPALFCKAASCIDPYIYAITHPRFKRELIK 264 (322)
Q Consensus 204 ~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~i~~~l~~~~s~~nP~iY~~~~~~fR~~~~~ 264 (322)
+.|-+ +..+..+.....-.....-.+..+...+-....+..|....+.++|.||-+..
T Consensus 237 vlFQ~---ss~VFl~~qt~~~~~~tAFlIKR~iNT~ei~agaatP~ffffTs~eirk~~s~ 294 (305)
T PF04789_consen 237 VLFQA---SSCVFLLCQTFKFNVATAFLIKRIINTMEIFAGAATPCFFFFTSKEIRKLVSS 294 (305)
T ss_pred HHHHH---HHHHHHhheeeeecchHHHHHHHHHHHHHHHhhccCCeEEEEehHHHHHHHHh
Confidence 66543 34333332222111111112333445566677889999999999999988754
No 29
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=98.02 E-value=6.8e-05 Score=63.01 Aligned_cols=153 Identities=15% Similarity=0.101 Sum_probs=98.3
Q ss_pred cchhhhhhhhhhhHHHHHHHHHHhhhhheeeeccCCCCCccchhhhhhhhHHHHHHHHHhhccccccccccccCC---ce
Q psy7555 52 GCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLKTTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVPEG---FL 128 (322)
Q Consensus 52 ~C~~~~~l~~~~~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~---~~ 128 (322)
.=++..++...+.+.+.+.-.+.++-|...+..|.++++..++-....+-++.+.+++++.|.....+.....++ .+
T Consensus 102 ~Lk~l~~~~~~~~Y~s~lf~~Lfc~~Rl~il~~p~~~~~i~~~i~~~~~P~i~i~p~~~~f~~~pa~G~C~Ql~~Pf~fG 181 (307)
T PF10322_consen 102 FLKILVFFYYYFNYSSMLFPVLFCLLRLIILYSPRNHKKICRKIFRIWIPFIFIYPFCFTFPMFPALGYCRQLDPPFPFG 181 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeCccchhHHHHhHHHHHHHHHHHHHHHHHHHccCCcEEEEeCCCCCCCC
Confidence 345667788888999999999999999999999999876777777888888888898888887666222211111 01
Q ss_pred ecccccccccccccchhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccchHHHhhhhhhhhhhhhHHHHHHHHH
Q psy7555 129 TSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYVRICMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWF 207 (322)
Q Consensus 129 ~~C~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~ 207 (322)
.. .... ..+. ..............+-.+.+++.+..++.++|+.+.+..+.+..++.+|.|+..+.+++.+.+-++
T Consensus 182 AI-~I~~-~~~~-~~~~~~~~~l~~s~~~~~~iii~N~lm~~Klr~~k~~l~~~~~s~~~~KAE~SLT~Tmi~mliP~i 257 (307)
T PF10322_consen 182 AI-IITS-TGSW-FNIRNSIFHLFFSIFWMISIIILNILMFFKLRKLKSSLSSQRRSKQSRKAERSLTLTMISMLIPYI 257 (307)
T ss_pred EE-EEEE-Eccc-ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhcccchhhheeHHHHHHHHHHHHH
Confidence 00 0000 0111 111112223333444466777888999999998863223333455666777777777777775553
No 30
>KOG4564|consensus
Probab=97.96 E-value=6.2e-05 Score=66.10 Aligned_cols=198 Identities=12% Similarity=0.132 Sum_probs=126.5
Q ss_pred eccccchhhhhhhhhhhHHHHHHHHHHhhhhheeeeccCCCCCccchhhhhhhhHHHHHHHHHhhccccccccccccCCc
Q psy7555 48 LIVSGCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLKTTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVPEGF 127 (322)
Q Consensus 48 ~~~~~C~~~~~l~~~~~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~ 127 (322)
.+...|+...++...+..+..+-+.+=++.=|-.+.--... .+++.....++.|.++.++..+..+. . .+..+
T Consensus 224 ~~~~~Ck~~~~~~~Yf~~aNf~WmlvEGlYLhtLlv~~~~s---er~~~~~y~~iGWG~P~v~v~~Wai~-r-~~~~d-- 296 (473)
T KOG4564|consen 224 SNPVGCKLLFVFFQYFVLANFFWMLVEGLYLHTLLVVAFFS---ERRYFWLYLLIGWGVPAVFVVVWAIV-R-LYLED-- 296 (473)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeecc---CccHHHHHHHHhhCCcHHHhhhHHhH-h-eeecc--
Confidence 35678999999999999888888888777666555543332 24667778899999999999887666 2 11111
Q ss_pred eecccccccccccccchhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccchHHHhhhhhhhhhhhhHHHHHHHHH
Q psy7555 128 LTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYVRICMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWF 207 (322)
Q Consensus 128 ~~~C~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~ 207 (322)
..|+....... ..++.-.-.++++++-.+..+.|.+.+-++-|....... ...+|++|..++++=+|-
T Consensus 297 -~~CW~~~~~~~------~~WIi~gPi~~ai~vNf~flinIvrILv~KLr~~~~~~~-----~~y~K~vKaTLvLIPLfG 364 (473)
T KOG4564|consen 297 -TGCWDSNDTGH------IWWIIRGPILLAILVNFIFLINIVRILVTKLRASNASET-----DQYRKLVKATLVLIPLFG 364 (473)
T ss_pred -ccccccCCCcc------eEEEEeccHHHHHHHHHHHHHHHHHHHHHHhcCccccch-----HHHHHHHHHHHHHHHHcC
Confidence 16865443211 111222233455666777778888888766654333321 226777777777766665
Q ss_pred HhhhhHHHHHHHHHhccccc-cchhhhHHHHHHHHhhcchhhhhhhccChhHHHHHHHhhccCCC
Q psy7555 208 ISWTPYATIALMGIFDYHQY-ITPLSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFCYNNK 271 (322)
Q Consensus 208 ~~~~P~~i~~~~~~~~~~~~-~~~~~~~i~~~l~~~~s~~nP~iY~~~~~~fR~~~~~~~~~~~~ 271 (322)
+-.+.+. +...+. .......+...+...+..+=-++|++.|+|.|.++|+.+.+.+-
T Consensus 365 I~~ilf~-------~~P~~~~~~~v~~~~~~~L~SfQGf~VAvlYCFlN~EVq~elrr~W~r~~~ 422 (473)
T KOG4564|consen 365 IHYILFA-------FRPDEDTLREVYLYFELFLGSFQGFFVAVLYCFLNGEVQAELRRKWSRWRL 422 (473)
T ss_pred CeeEEEE-------ecCchHHHHHHHHHHHHHHHhccchheehheeecCHHHHHHHHHHHHhcCh
Confidence 4322221 111111 12234445677888888999999999999999999998865543
No 31
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=97.81 E-value=0.00033 Score=58.14 Aligned_cols=74 Identities=15% Similarity=0.234 Sum_probs=54.3
Q ss_pred hhhhhhhhhhhhHHHHHHH-HHHhhhhHHHHHHHHHhccccccchhhhHHHHHHHHhhcchhhhhhhccChhHHHHH
Q psy7555 187 KKRNIEIRLCIVAMGVIGL-WFISWTPYATIALMGIFDYHQYITPLSSMIPALFCKAASCIDPYIYAITHPRFKREL 262 (322)
Q Consensus 187 ~~~~~~~~~~~~~~~i~~~-f~~~~~P~~i~~~~~~~~~~~~~~~~~~~i~~~l~~~~s~~nP~iY~~~~~~fR~~~ 262 (322)
+..+.+++..|.+.+.++. -+++..|-.+......++ .+...+...+.......-|++||+.-.++-|.||+++
T Consensus 236 ~T~~lq~qL~~AL~vQT~IPi~vsf~Pc~~~wy~pif~--i~~~~~~n~~~~iAls~FPf~DPlAii~~lP~~R~ri 310 (310)
T PF10319_consen 236 KTKRLQRQLFKALIVQTVIPICVSFSPCVLSWYGPIFG--IDLGRWNNYFSVIALSAFPFLDPLAIILCLPAFRNRI 310 (310)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHhhccHHHHHhHHHHc--CChhHHHHHHHHHHHHHccccCchHhheecHHhhccC
Confidence 3344555666666665544 456668887777666664 4456778888888888999999999999999999863
No 32
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=97.76 E-value=0.00078 Score=57.70 Aligned_cols=166 Identities=12% Similarity=0.115 Sum_probs=90.0
Q ss_pred eeeeccccchhhhhhhhhhhHHHHHHHHHHhhhhheeeeccCCCCCccchhhhhhhhHHHHHHHHHhhcccccccccccc
Q psy7555 45 QRMLIVSGCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLKTTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVP 124 (322)
Q Consensus 45 ~~~~~~~~C~~~~~l~~~~~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~ 124 (322)
+..+.+..|.....+..++....++.-+++.+||.+|...|..+++.+......+.++.-+.++... .+.. .+...
T Consensus 93 ~i~f~~~eC~~~~~~~~~~~~~~~~~q~aL~idRl~at~~~~~~~~~~~~~g~~l~i~~li~s~~~~--~~i~--~~~p~ 168 (328)
T PF02117_consen 93 SILFTSSECFPYYYFYYFTNSGMIFIQFALTIDRLLATFFPKYYSKKSYIIGIILSILVLILSFITG--FIIY--WDDPL 168 (328)
T ss_pred eeEeecCceeeeehHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHHe--eEEE--eCCCC
Confidence 4567778899999999999999999999999999999988866542222222222222222222222 2222 22333
Q ss_pred CCceecccccccccccccchhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHhccccccchHHHhhhhhhhhhhhhHHHHHH
Q psy7555 125 EGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYVRICMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIG 204 (322)
Q Consensus 125 ~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 204 (322)
++....|............ ....+...+. ++-.+....+.+.-+|..++..=.-.++=+.++....++.+..+.+
T Consensus 169 ~gyv~~C~~~p~~s~~~~~----~~~~~~~~l~-i~~~i~s~~l~~~nkk~e~~~~f~v~~Ry~~~Eni~ST~aI~~i~~ 243 (328)
T PF02117_consen 169 DGYVPSCFYPPKNSVNRFN----IFLIVCFVLT-IFNLIVSIFLMYYNKKKEKKTRFDVNSRYQKRENINSTKAICIISI 243 (328)
T ss_pred ccccccccCCChhHHHHHH----HHHHHHHHHH-HHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556688654322111111 1111111111 1122234444444444434322233334445566778888888888
Q ss_pred HHHHhhhhHHHHHHH
Q psy7555 205 LWFISWTPYATIALM 219 (322)
Q Consensus 205 ~f~~~~~P~~i~~~~ 219 (322)
.-+++.+-|.+...+
T Consensus 244 ~Q~i~~~iys~~v~~ 258 (328)
T PF02117_consen 244 SQFICMFIYSFGVFI 258 (328)
T ss_pred HHHHHHHHHHHHHHH
Confidence 887777777655444
No 33
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=97.72 E-value=7.3e-06 Score=67.31 Aligned_cols=139 Identities=14% Similarity=0.182 Sum_probs=0.0
Q ss_pred cchhhhhhhhhhhHHHHHHHHHHhhhhheeeeccCCCCCccchhhhhhhhHHHHHHHHHhhccccccccccccCCceecc
Q psy7555 52 GCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLKTTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVPEGFLTSC 131 (322)
Q Consensus 52 ~C~~~~~l~~~~~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C 131 (322)
.|...+.+..++..++..-+.+.++|-|..+..+.. ..+++.....++.|.++.+......... ....+...|
T Consensus 71 ~C~~~a~~~hy~~la~f~Wm~~~~~~l~~~~~~~~~---~~~~~~~~~~~~gwg~P~~iv~i~~~~~----~~~y~~~~C 143 (242)
T PF00002_consen 71 LCRAIAILLHYFFLASFFWMLVEAFYLYRLLVKVFN---SSRRRFWWYYLIGWGIPALIVVISVAVN----SDGYGNDNC 143 (242)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchhhhhHhHHHHHHHHHHHHHHHHHhheeEEEeec---ccchhhheeeeeeecCcceeeeeeeeec----ccccccccc
Confidence 599999999999999999999999999999988733 2345666777889999998888766552 111222468
Q ss_pred cccccccccccchhhhhhhhhhhhhhhhhh----HHHHHHHHHHHHHhccccccchHHHhhhhhhh-hhhhhHHHHHHHH
Q psy7555 132 SFDYLASDVWTKGFILTFFCAAWVIPFFII----TFCYVRICMIVIKSGMSASRHAAEQKKRNIEI-RLCIVAMGVIGLW 206 (322)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~----~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~f 206 (322)
+.+.... ... .+..|..++ .+.+..+.+++.++.++.. .++.++++ +..+..+.+..++
T Consensus 144 Wl~~~~~-------~~~----~f~~P~~~~l~in~vi~~~v~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~L~~ll 207 (242)
T PF00002_consen 144 WLSNDWG-------FIW----AFVGPVLIILLINIVIFILVLRVLVRKSRSSD-----KSEKKKRRKKILRASLILLPLL 207 (242)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCCc-------eEE----EEEecccceecccchhheeeEEeehhhhhhhh-----hhhccchhhhHHHHHHHHHHHH
Confidence 5543111 111 122333333 3334445555544433111 11112222 3666666677777
Q ss_pred HHhhhhH
Q psy7555 207 FISWTPY 213 (322)
Q Consensus 207 ~~~~~P~ 213 (322)
-++|...
T Consensus 208 g~~w~~~ 214 (242)
T PF00002_consen 208 GITWLFG 214 (242)
T ss_dssp -------
T ss_pred HHHheee
Confidence 7777764
No 34
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=97.37 E-value=0.00064 Score=44.11 Aligned_cols=71 Identities=10% Similarity=0.175 Sum_probs=55.3
Q ss_pred hhhhhhhhhhhHHHHHHHHHHhhh-hHHHHHHHHHhccccccchhhhHHHHHHHHhhcchhhhhhhccChhH
Q psy7555 188 KRNIEIRLCIVAMGVIGLWFISWT-PYATIALMGIFDYHQYITPLSSMIPALFCKAASCIDPYIYAITHPRF 258 (322)
Q Consensus 188 ~~~~~~~~~~~~~~i~~~f~~~~~-P~~i~~~~~~~~~~~~~~~~~~~i~~~l~~~~s~~nP~iY~~~~~~f 258 (322)
++++-+|.++.+++=-++|+++|+ |+..-.+-...+.......++..+...+..+|+++|-++|.++-+..
T Consensus 3 ~r~~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~~~~~~~p~~~l~~i~~~~~~~~G~VD~lvf~~~erpw 74 (76)
T PF11970_consen 3 RRKRIRRQLRSMFIYPLVYIVLWLFPFAAHRMQYMYEIGHGPSFWLFCIAGFMQPSQGFVDCLVFTLRERPW 74 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHccCHHHhhheeeecccC
Confidence 345567788999999999999999 98776666554333445567888899999999999999999876543
No 35
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=96.96 E-value=0.00093 Score=49.47 Aligned_cols=63 Identities=11% Similarity=0.230 Sum_probs=53.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHhhhhheeeeccCCCCC-ccchhhhhhhhHHHHHHHHHhhccccc
Q psy7555 55 IYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLK-TTRNRSRLWILFLWLYGSFFASLPLVS 117 (322)
Q Consensus 55 ~~~~l~~~~~~~s~~~l~~iaidRy~ai~~p~~~~~-~~~~~~~~~i~~~w~~~~~~~~~~~~~ 117 (322)
-...+..++.....+...+|+++|-.+|.+|.+... ++.+|.+.-+.++.++.+...+.|.+.
T Consensus 46 ~~TL~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~Fs~~kl~~YC~~i~i~~~i~LlIPy~S 109 (153)
T PF03383_consen 46 EVTLFGTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWFSDKKLWIYCGIIAILSFISLLIPYFS 109 (153)
T ss_pred EEeeeehHHHHHHHHHHHHHHHhheEEEEecCCCccccccchhHHHHHHHHHHHHHHHHhhcCC
Confidence 335577888888999999999999999999999865 999999999988888887777776665
No 36
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=96.87 E-value=0.012 Score=49.04 Aligned_cols=159 Identities=9% Similarity=-0.012 Sum_probs=83.5
Q ss_pred ccchhhhhhhhhhhHHHHHHHHHHhhhhheeeeccCCCC---CccchhhhhhhhHHHHHHHHHhhccccccccccccCCc
Q psy7555 51 SGCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPL---KTTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVPEGF 127 (322)
Q Consensus 51 ~~C~~~~~l~~~~~~~s~~~l~~iaidRy~ai~~p~~~~---~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~ 127 (322)
..|.+..-+.......-.....+|+-.=|. |..+-+.. +-++|+...=.++++.++++......+....++.-. +
T Consensus 57 ~wCDI~~kl~~~~~~g~~~a~lcI~r~L~~-I~s~r~~~~~~~~~rr~~~~d~~i~~g~Pil~m~l~yivQ~~Rf~I~-e 134 (283)
T PF02076_consen 57 VWCDISTKLIIGSSVGIPAASLCIMRRLYR-IASARAVSLSRSEKRRRIIIDLLICFGIPILQMALHYIVQGHRFDIV-E 134 (283)
T ss_pred eeeeehHHHHHHHHHHHHHHHHHHHHHHHH-HhccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeEe-c
Confidence 889999888888877766666655554442 33333321 123666777778888888888777666533333322 2
Q ss_pred eecccccccccccccchhhhhhhhhhhhhhhhhhH---HHHHHHHHHHHHhccccccchHHHhhhhhhhhhhhhHHHHHH
Q psy7555 128 LTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIIT---FCYVRICMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIG 204 (322)
Q Consensus 128 ~~~C~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~---~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 204 (322)
...|...... ......+..+-|.++.+ +.-+...+...|++++.++.-+..+..-+..|..| ++.+.+
T Consensus 135 ~~GC~~~~~~--------s~~~~~l~~iwp~i~~lia~vYa~lt~~~f~~rr~~f~~~l~~s~s~l~~~Rf~R-L~~la~ 205 (283)
T PF02076_consen 135 DVGCYPAIYP--------SWPTIFLFIIWPPIFSLIAAVYAILTLRRFIRRRKQFRDILSSSNSGLNTSRFFR-LLALAL 205 (283)
T ss_pred ccCCccCCCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHH-HHHHHH
Confidence 2246543221 11222222222222222 22224444444444322211111111122334444 667888
Q ss_pred HHHHhhhhHHHHHHHH
Q psy7555 205 LWFISWTPYATIALMG 220 (322)
Q Consensus 205 ~f~~~~~P~~i~~~~~ 220 (322)
+.+++.+|..+..+..
T Consensus 206 ~~i~~~~P~~i~~~v~ 221 (283)
T PF02076_consen 206 VIILIYLPLSIYYLVS 221 (283)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8889999999998883
No 37
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=96.59 E-value=0.053 Score=45.06 Aligned_cols=38 Identities=24% Similarity=0.366 Sum_probs=29.3
Q ss_pred hhhhhhhhHHHHHHHHHHhhhhheeeeccCCCCCccch
Q psy7555 57 GFIGGLTGTVSITTLASIALDRYYVVVYPLDPLKTTRN 94 (322)
Q Consensus 57 ~~l~~~~~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~ 94 (322)
+........+.......||+||.+|+..|..|++.+++
T Consensus 85 ~~p~~~~~~iR~~l~~~Ia~dR~~A~~fPI~y~~~r~k 122 (273)
T PF10316_consen 85 GWPSSNLGSIRSILALIIALDRVFAVYFPIFYHNYRKK 122 (273)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCcc
Confidence 44455555778889999999999999999998753333
No 38
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=95.21 E-value=0.36 Score=41.30 Aligned_cols=85 Identities=12% Similarity=0.101 Sum_probs=64.3
Q ss_pred eccccchhhhhhhhhhhHHHHHHHHHHhhhhheeeeccCCCCCccchhhhhhhhHHHHHHHHHhhccccccccccccCCc
Q psy7555 48 LIVSGCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLKTTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVPEGF 127 (322)
Q Consensus 48 ~~~~~C~~~~~l~~~~~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~ 127 (322)
.+...|.+...+.+++..++..--+.+++.=|++...--.+. .-.++....-+++|.++.+.++..+.. ...+.++-
T Consensus 89 ~~~~~C~~~F~l~Yyf~mAa~~WWviLt~~W~lsa~~kw~~e-~i~~~s~yfH~~aW~iP~~~ti~vL~~--~~VdgD~l 165 (328)
T PF01534_consen 89 LENSSCTVVFLLLYYFGMAASLWWVILTLTWFLSAGLKWGSE-AIEKKSSYFHLVAWGIPAVLTIAVLAL--RKVDGDEL 165 (328)
T ss_pred CCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccCcc-hhhhhcchhhhHHhhhhHHHHHHHHHh--cccccccc
Confidence 346789999999998888888888888999998887544432 334667778999999999999877666 55555666
Q ss_pred eecccccc
Q psy7555 128 LTSCSFDY 135 (322)
Q Consensus 128 ~~~C~~~~ 135 (322)
.+.|....
T Consensus 166 tGiC~Vg~ 173 (328)
T PF01534_consen 166 TGICFVGN 173 (328)
T ss_pred cceeEEeC
Confidence 66797653
No 39
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=92.80 E-value=0.13 Score=40.98 Aligned_cols=48 Identities=6% Similarity=0.014 Sum_probs=42.0
Q ss_pred cceeeeccccchhhhhhhhhhhHHHHHHHHHHhhhhheeeeccCCCCC
Q psy7555 43 SYQRMLIVSGCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLK 90 (322)
Q Consensus 43 ~~~~~~~~~~C~~~~~l~~~~~~~s~~~l~~iaidRy~ai~~p~~~~~ 90 (322)
+-+-..+...++.......+..+.+++.-..+++||+.|....-+|.+
T Consensus 75 ~CdLiI~~~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE~ 122 (236)
T PF02175_consen 75 KCDLIIDPTLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYEN 122 (236)
T ss_pred CceEEEchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 345666778899999999999999999999999999999999888863
No 40
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=81.99 E-value=5.7 Score=31.23 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=31.9
Q ss_pred eeccccchhhhhhhhhhhHHHHHHHHHHhhhhheeeeccCC
Q psy7555 47 MLIVSGCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLD 87 (322)
Q Consensus 47 ~~~~~~C~~~~~l~~~~~~~s~~~l~~iaidRy~ai~~p~~ 87 (322)
...-..|.+..-....+..+.-...+++|+|||+-|+.-.|
T Consensus 111 ~ytI~vCSflk~f~S~t~s~~~vip~aVAIyRy~~VV~k~r 151 (226)
T PF06681_consen 111 QYTIFVCSFLKNFTSSTTSCAQVIPVAVAIYRYLIVVLKKR 151 (226)
T ss_pred eEEEEeehHHHhHHHHHhhhhccchhhhhhhhhheeeeccc
Confidence 34667899888777777777777777899999999996444
No 41
>PF13853 7tm_4: Olfactory receptor
Probab=73.69 E-value=0.31 Score=36.37 Aligned_cols=79 Identities=16% Similarity=0.126 Sum_probs=44.4
Q ss_pred hhhhHHHHHHHHHhhccccccccccc--cCCceeccccc----ccccccccchhhhhhhhhhhhhhhhhhHHHHHHHHHH
Q psy7555 98 LWILFLWLYGSFFASLPLVSSKFRYV--PEGFLTSCSFD----YLASDVWTKGFILTFFCAAWVIPFFIITFCYVRICMI 171 (322)
Q Consensus 98 ~~i~~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~C~~~----~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~y~~i~~~ 171 (322)
.+.+..|..+++..++.... ..... ...+.-.|... ...+......+......+..+.|+.+++++|.+|+..
T Consensus 5 ~l~~~~~~~~~~~~l~~~~~-~~~l~~~nii~~f~c~~~ll~LaC~dt~~~~~~~~~~~~~~~~~~~~~Il~SY~~Il~a 83 (144)
T PF13853_consen 5 LLAAGSWLSGLLNSLPHTLL-TLSLCFCNIIHHFCCDPPLLKLACSDTSINEIVGFVVAIFILLGPLLLILFSYIRILRA 83 (144)
T ss_pred hhhHHHHHHHHHHHHHHHHH-HeeCCCCCCCcceeeCHHHhcccCCchhhhheeeecccceeEEEEeeccccceeEEEeh
Confidence 34566777777766665443 11111 11111122200 0112233444555566667789999999999999998
Q ss_pred HHHhcc
Q psy7555 172 VIKSGM 177 (322)
Q Consensus 172 ~~~~~~ 177 (322)
+.|...
T Consensus 84 vlki~S 89 (144)
T PF13853_consen 84 VLKIPS 89 (144)
T ss_pred hhcccc
Confidence 877654
No 42
>KOG4219|consensus
Probab=63.00 E-value=1.1e+02 Score=27.14 Aligned_cols=101 Identities=9% Similarity=0.050 Sum_probs=66.2
Q ss_pred HHHHHHHHHhccccccchHHHhhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHH----HHhccccccchhhhHHHHHHHH
Q psy7555 166 VRICMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALM----GIFDYHQYITPLSSMIPALFCK 241 (322)
Q Consensus 166 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~----~~~~~~~~~~~~~~~i~~~l~~ 241 (322)
.+-++.-+..+.+..+...+.+..++-.|....++++..+--+=.=+|+++... ..........-..+++.-....
T Consensus 233 av~LW~~~~~gd~~d~~~~~~kak~K~vkmliiVV~~FaicWlPyh~y~il~~~~~~i~~~k~i~~vyl~~~WLaMSst~ 312 (423)
T KOG4219|consen 233 AVTLWGRRIPGDQQDRKHEQLKAKKKVVKMLIIVVVIFAICWLPYHIYFILNATNPEINRKKFIQQVYLAIYWLAMSSTC 312 (423)
T ss_pred HHHHHhccCccchhchhhHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555556655444544455555667777777777776655556666666532 1111223444456677777888
Q ss_pred hhcchhhhhhhccChhHHHHHHHhh
Q psy7555 242 AASCIDPYIYAITHPRFKRELIKMF 266 (322)
Q Consensus 242 ~~s~~nP~iY~~~~~~fR~~~~~~~ 266 (322)
.|+.+--+.---++.+||++++-+.
T Consensus 313 yNPiIY~~lN~Rfr~gf~~~fr~cp 337 (423)
T KOG4219|consen 313 YNPIIYCFLNKRFRGGFRRAFRWCP 337 (423)
T ss_pred hccHhhhhhHHHHHHHHhhhhheee
Confidence 8999888888889999999999875
No 43
>KOG4289|consensus
Probab=59.77 E-value=88 Score=32.80 Aligned_cols=176 Identities=10% Similarity=0.062 Sum_probs=90.3
Q ss_pred ccccchhhhhhhhhhhHHHHHHHHHHhhhhheeeeccCCCCCccchhhhhhhhHHHHHHHHHhhccccccccccccCCce
Q psy7555 49 IVSGCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLKTTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVPEGFL 128 (322)
Q Consensus 49 ~~~~C~~~~~l~~~~~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 128 (322)
+...|.+...+..+...+....+.+-++.-|.+...- ..........++.|.++.++....+.. +
T Consensus 2222 nq~~CtvvailLhf~~~stFaWlfl~gLhlYRml~e~-----v~tg~mrfy~~vGwgvPa~itglavgl-------d--- 2286 (2531)
T KOG4289|consen 2222 NQFYCTVVAILLHFTYLSTFAWLFLEGLHLYRMLTEN-----VDTGPMRFYYLVGWGVPALITGLAVGL-------D--- 2286 (2531)
T ss_pred CchhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc-----CCCCceeEEEEeecchhhheeeeeecc-------c---
Confidence 5778999998888888777777777777666665541 233334445566788777665544333 1
Q ss_pred ecccccccccccccchhhhhhhhhhhhhhhhhhHHH--HHHHHHHHHHhccccccchHHHhhhhhhhhhhhhHHHHHHHH
Q psy7555 129 TSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFC--YVRICMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLW 206 (322)
Q Consensus 129 ~~C~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~--y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f 206 (322)
..|+..... ..+..+..|+...+++ |..+.-..-.-+++.. .-..+-..+..+..+++.++.
T Consensus 2287 DfCwlS~h~-----------~LiWsfagPigl~i~ms~~~~~lsa~vSc~~k~~-----~f~kK~~v~~lq~~fl~llll 2350 (2531)
T KOG4289|consen 2287 DFCWLSPHD-----------TLIWSFAGPIGLVILMSFYAAALSARVSCHKKYQ-----VFVKKGNVSVLQHSFLLLLLL 2350 (2531)
T ss_pred ceeecccch-----------heeeeecccceeeehHHHHHHHHHHHHhhhhhhe-----eeeeccchhhhHHHHHHHHHH
Confidence 357654211 0111222232222222 2222111111111000 000111223445555444444
Q ss_pred HHhhhhHHHHHHHHHhccccccchhhhHHHHHHHHhhcchhhhhhhccChhHHHHHH
Q psy7555 207 FISWTPYATIALMGIFDYHQYITPLSSMIPALFCKAASCIDPYIYAITHPRFKRELI 263 (322)
Q Consensus 207 ~~~~~P~~i~~~~~~~~~~~~~~~~~~~i~~~l~~~~s~~nP~iY~~~~~~fR~~~~ 263 (322)
-..|+-. ++.. ....-.+.++...+..+...+--++|+..|.+-|++.+
T Consensus 2351 satwl~~----ll~v----n~~~l~fhyl~a~~~~lqg~~Vlll~cVl~~~~raa~~ 2399 (2531)
T KOG4289|consen 2351 SATWLLG----LLAV----NPDPLEFHYLFASIIGLQGPFVLLLWCVLNIEVRAALK 2399 (2531)
T ss_pred HHHHHHH----HHhc----CCchHHHHHHHHHHHHhhhHHHHHHHhhhcHHHHHhhc
Confidence 4444322 2211 22333455666667777777777889999999999987
No 44
>PF10325 7TM_GPCR_Srz: Serpentine type 7TM GPCR chemoreceptor Srz; InterPro: IPR018817 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class z (Srz), a solo family amongst the superfamilies of chemoreceptors [, ]. The genes encoding Srz appear to be under strong adaptive evolutionary pressure [].
Probab=58.46 E-value=36 Score=28.22 Aligned_cols=110 Identities=15% Similarity=0.231 Sum_probs=56.7
Q ss_pred hhhhhhhHHHHHHHHHHhhhhheeeeccCCC--CCccchhhhhhhhHHHHHHHHHhhccccccccccccCCceecccccc
Q psy7555 58 FIGGLTGTVSITTLASIALDRYYVVVYPLDP--LKTTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVPEGFLTSCSFDY 135 (322)
Q Consensus 58 ~l~~~~~~~s~~~l~~iaidRy~ai~~p~~~--~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~ 135 (322)
+.......+--+.+.++|++|++---.|-.- -..+.+.....+-..+.+..+--+............+.. ..
T Consensus 87 ~~l~i~~~v~~lllsLLAIqRFllyFfP~~Ek~v~~~~k~~~~~I~~lY~~~~~k~i~~~~~~~~~~~~~~~--~~---- 160 (267)
T PF10325_consen 87 FILYIITQVFHLLLSLLAIQRFLLYFFPSSEKYVNFSQKNIKKIIWFLYIFFILKDIVFFIWYFISFNNEST--EE---- 160 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc--hh----
Confidence 3444444556667899999999999999843 225556555555555555444433222220111100000 00
Q ss_pred cccccccchhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHhcc
Q psy7555 136 LASDVWTKGFILTFFCAAWVIPFFIITFCYVRICMIVIKSGM 177 (322)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~p~~i~~~~y~~i~~~~~~~~~ 177 (322)
.+. ...+.....+... +-+.+....|+-|...+||.++
T Consensus 161 --~~~-~~~~~~~~~~~~~-~ll~~S~lLYIPI~isirK~~~ 198 (267)
T PF10325_consen 161 --IET-FSYIYVIFYIILN-ILLFLSALLYIPIFISIRKLSH 198 (267)
T ss_pred --hhH-HHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHhhc
Confidence 000 1111222222333 3356667889999999998765
No 45
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=57.82 E-value=28 Score=22.12 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=21.4
Q ss_pred hhhhhhhhhhhhhhhhhhH-HHHHHHHHHHHHhcc
Q psy7555 144 GFILTFFCAAWVIPFFIIT-FCYVRICMIVIKSGM 177 (322)
Q Consensus 144 ~~~~~~~~~~~~~p~~i~~-~~y~~i~~~~~~~~~ 177 (322)
.+.++..++..+.|++++. ++.+++.+.+.+..+
T Consensus 19 P~~Fl~~vll~LtPlfiisa~lSwkLaK~ie~~er 53 (74)
T PF15086_consen 19 PYEFLTTVLLILTPLFIISAVLSWKLAKAIEKEER 53 (74)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777777877665 445666666655443
No 46
>PHA03235 DNA packaging protein UL33; Provisional
Probab=53.96 E-value=1.3e+02 Score=26.90 Aligned_cols=39 Identities=18% Similarity=0.298 Sum_probs=27.1
Q ss_pred hhhHHHHHHHHhhcchhhhhhhccChhHHHHHHHhhccC
Q psy7555 231 LSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFCYN 269 (322)
Q Consensus 231 ~~~~i~~~l~~~~s~~nP~iY~~~~~~fR~~~~~~~~~~ 269 (322)
....+...-..+|+.+-.++.--+.+.+|+.+++.+.++
T Consensus 290 i~~~La~~ns~lNPiIY~~~~~~FRk~~~~~l~~~l~~~ 328 (409)
T PHA03235 290 LSRLVPNLHCLLNPILYAFLGNDFLKRFRQCFRGELFSR 328 (409)
T ss_pred HHHHHHHHHHhHhHHHHHHhhHHHHHHHHHHHhhhhhhh
Confidence 344555666777888888888778888888887654433
No 47
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=45.47 E-value=43 Score=20.53 Aligned_cols=23 Identities=13% Similarity=0.394 Sum_probs=11.5
Q ss_pred hhhhhhhhhhhHHHHHHHHHHhh
Q psy7555 188 KRNIEIRLCIVAMGVIGLWFISW 210 (322)
Q Consensus 188 ~~~~~~~~~~~~~~i~~~f~~~~ 210 (322)
++++.++...++..+++++++-|
T Consensus 31 ~qk~~~~~~~i~~~~~i~~l~v~ 53 (59)
T PF09889_consen 31 RQKRMRKTQYIFFGIFILFLAVW 53 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555554433
No 48
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=42.07 E-value=65 Score=18.22 Aligned_cols=29 Identities=14% Similarity=-0.059 Sum_probs=15.4
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHhcc
Q psy7555 149 FFCAAWVIPFFIITFCYVRICMIVIKSGM 177 (322)
Q Consensus 149 ~~~~~~~~p~~i~~~~y~~i~~~~~~~~~ 177 (322)
..++..++-+.+..+.-..|+.++++-+.
T Consensus 6 t~iFsvvIil~If~~iGl~IyQkikqIrg 34 (49)
T PF11044_consen 6 TTIFSVVIILGIFAWIGLSIYQKIKQIRG 34 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444555667777766544
No 49
>PF15050 SCIMP: SCIMP protein
Probab=38.71 E-value=74 Score=22.60 Aligned_cols=33 Identities=9% Similarity=0.076 Sum_probs=17.0
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHHHHHHHHhcc
Q psy7555 145 FILTFFCAAWVIPFFIITFCYVRICMIVIKSGM 177 (322)
Q Consensus 145 ~~~~~~~~~~~~p~~i~~~~y~~i~~~~~~~~~ 177 (322)
|.++..+...++.+.+-++.|+.-.+.+|+.++
T Consensus 8 FWiiLAVaII~vS~~lglIlyCvcR~~lRqGkk 40 (133)
T PF15050_consen 8 FWIILAVAIILVSVVLGLILYCVCRWQLRQGKK 40 (133)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 344444444455555555666555555555444
No 50
>KOG4220|consensus
Probab=35.79 E-value=2.1e+02 Score=25.74 Aligned_cols=75 Identities=13% Similarity=0.101 Sum_probs=41.2
Q ss_pred hhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHhccc---------ccc-chhh-hHHHHHHHHhhcchhhhhhhccChhHH
Q psy7555 191 IEIRLCIVAMGVIGLWFISWTPYATIALMGIFDYH---------QYI-TPLS-SMIPALFCKAASCIDPYIYAITHPRFK 259 (322)
Q Consensus 191 ~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~---------~~~-~~~~-~~i~~~l~~~~s~~nP~iY~~~~~~fR 259 (322)
..+|+..|+..--++-++.|.|.....=. ..+.. ... .+++ ......-.++.-.+--++|.-..++-|
T Consensus 143 TtkrA~~MI~~AW~iSfiLWaPaIl~Wqy-ivGkrTv~~~eC~iQFlsnp~iTfGTAiAAFYlPVtiM~~LY~rIyret~ 221 (503)
T KOG4220|consen 143 TTKRAGLMIGAAWVLSFVLWAPAILFWQY-IVGKRTVPDGECYIQFLSNPAITFGTAIAAFYLPVTIMTILYWRIYRETR 221 (503)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhHh-heeeeecCCCceEEEeecCceeehhHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34456666666666677789887654322 11111 001 1111 112233444555566688888888888
Q ss_pred HHHHHhh
Q psy7555 260 RELIKMF 266 (322)
Q Consensus 260 ~~~~~~~ 266 (322)
++.+++-
T Consensus 222 kR~k~~~ 228 (503)
T KOG4220|consen 222 KRQKELA 228 (503)
T ss_pred HHHHhhh
Confidence 8887754
No 51
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=35.39 E-value=84 Score=23.04 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=21.3
Q ss_pred hhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHh
Q psy7555 190 NIEIRLCIVAMGVIGLWFISWTPYATIALMGIF 222 (322)
Q Consensus 190 ~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~ 222 (322)
+..++.....+.....|++++.-+....-...+
T Consensus 32 ~~Hr~~Ml~a~~ls~lFlv~Yl~~~~~~g~~~f 64 (133)
T PF04238_consen 32 KLHRKLMLTAFVLSALFLVSYLYYHFLGGSTPF 64 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 445566677777888888887766655333333
No 52
>COG1007 NuoN NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]
Probab=30.61 E-value=4.3e+02 Score=24.30 Aligned_cols=77 Identities=14% Similarity=0.030 Sum_probs=48.6
Q ss_pred CCccchhhhhhhhHHHHHHHHHhhccccccccccccCCceecccccccccccccchhhhhhhhhhhhhhhhhhHHHHHHH
Q psy7555 89 LKTTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVPEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYVRI 168 (322)
Q Consensus 89 ~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~y~~i 168 (322)
+-..+++........-..-.+..+||..+.|+++.--.. ......+...+..++--.+-.+.|.|+
T Consensus 355 ~GL~~~~P~~A~~~~i~m~SLaGIPP~~GF~gK~~vf~~--------------av~~~~~~Laii~vl~S~isa~YYlRv 420 (475)
T COG1007 355 AGLSKRHPLLAALLTILMLSLAGIPPLAGFWGKFYVFLA--------------AVQAGLWWLAVIAVLNSAISAYYYLRV 420 (475)
T ss_pred ccccccCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHH--------------HHHcChHHHHHHHHHHHHHHHHHHHHH
Confidence 335666667777666677777788998886666533210 001122333344456677888999999
Q ss_pred HHHHHHhcccc
Q psy7555 169 CMIVIKSGMSA 179 (322)
Q Consensus 169 ~~~~~~~~~~~ 179 (322)
.+.+.-.....
T Consensus 421 v~~m~~~~~~~ 431 (475)
T COG1007 421 VKAMYFEEPEG 431 (475)
T ss_pred HHHHHhCCccc
Confidence 99998776543
No 53
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=28.13 E-value=94 Score=19.28 Aligned_cols=28 Identities=7% Similarity=0.066 Sum_probs=12.5
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHh
Q psy7555 148 TFFCAAWVIPFFIITFCYVRICMIVIKS 175 (322)
Q Consensus 148 ~~~~~~~~~p~~i~~~~y~~i~~~~~~~ 175 (322)
..++++.++..++....+.+..+..++.
T Consensus 26 ~~f~~G~llg~l~~~~~~~~~r~~~~~~ 53 (68)
T PF06305_consen 26 IAFLLGALLGWLLSLPSRLRLRRRIRRL 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 54
>PF05241 EBP: Emopamil binding protein ; InterPro: IPR007905 Emopamil binding protein (EBP) is a nonglycosylated type I integral membrane protein of endoplasmic reticulum and shows high level expression in epithelial tissues. The EBP protein has emopamil binding domains, including the sterol acceptor site and the catalytic centre, which show Delta8-Delta7 sterol isomerase activity. Human sterol isomerase, a homologue of mouse EBP, is suggested not only to play a role in cholesterol biosynthesis, but also to affect lipoprotein internalisation. In humans, mutations of EBP are known to cause the genetic disorder of X-linked dominant chondrodysplasia punctata (CDPX2). This syndrome of humans is lethal in most males, and affected females display asymmetric hyperkeratotic skin and skeletal abnormalities [].; GO: 0047750 cholestenol delta-isomerase activity, 0016125 sterol metabolic process, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=24.69 E-value=1.4e+02 Score=23.49 Aligned_cols=36 Identities=8% Similarity=0.001 Sum_probs=28.5
Q ss_pred cchhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHhcc
Q psy7555 142 TKGFILTFFCAAWVIPFFIITFCYVRICMIVIKSGM 177 (322)
Q Consensus 142 ~~~~~~~~~~~~~~~p~~i~~~~y~~i~~~~~~~~~ 177 (322)
.-.|.++...+..++|..++.-++-.+.+..+..++
T Consensus 158 ~W~y~v~~N~iWivvP~~~l~~s~~~i~~a~~~~~~ 193 (194)
T PF05241_consen 158 FWFYFVFPNGIWIVVPLLLLYQSWKEIARAFRAAQK 193 (194)
T ss_pred heeehhhcchHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345567778888999999999999999888776543
No 55
>COG1823 Predicted Na+/dicarboxylate symporter [General function prediction only]
Probab=23.00 E-value=5.4e+02 Score=22.87 Aligned_cols=59 Identities=17% Similarity=0.122 Sum_probs=34.2
Q ss_pred hhhhhHHHHHHHHHHhhhhHHHHHHHHHhccccccc---------------hhhhHHHHHHHHhhcchhhhhhh
Q psy7555 194 RLCIVAMGVIGLWFISWTPYATIALMGIFDYHQYIT---------------PLSSMIPALFCKAASCIDPYIYA 252 (322)
Q Consensus 194 ~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~---------------~~~~~i~~~l~~~~s~~nP~iY~ 252 (322)
.+......=...+++-.+||.++.++......+... -.+.++.+.+...-.-+||+-|.
T Consensus 220 ~t~~~ivM~lV~~VirLTPYgV~AlMtkv~ats~~~~I~~Lg~FivAsY~Ai~~MFvvH~iLL~~~g~NPi~Y~ 293 (458)
T COG1823 220 DTLQSIVMKLVRLVIRLTPYGVLALMTKVVATSNLEDIIKLGSFIVASYIAIFIMFVVHGILLALNGVNPIKYF 293 (458)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHhhccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 344444444455677779999998876542211111 12334445555566788999884
No 56
>PF12166 DUF3595: Protein of unknown function (DUF3595); InterPro: IPR021999 This family of proteins is functionally uncharacterised.This family of proteins is found in eukaryotes. Proteins in this family are typically between 578 and 2525 amino acids in length.
Probab=22.85 E-value=56 Score=29.37 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=25.6
Q ss_pred hhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHhc
Q psy7555 188 KRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFD 223 (322)
Q Consensus 188 ~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~ 223 (322)
++....|...=.++++++.++-|+|..++......+
T Consensus 57 ~~~~~~K~~~G~~~~~~li~iiw~PLllfS~~n~~~ 92 (422)
T PF12166_consen 57 KKPKMVKYLMGGLLLLLLIIIIWFPLLLFSSGNPVG 92 (422)
T ss_pred cCcceEEeeehHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 334445555656677788888999999988776653
No 57
>KOG2575|consensus
Probab=22.84 E-value=85 Score=27.82 Aligned_cols=26 Identities=27% Similarity=0.615 Sum_probs=21.9
Q ss_pred hhhhhhhHHHHHHHHHHhhhhHHHHH
Q psy7555 192 EIRLCIVAMGVIGLWFISWTPYATIA 217 (322)
Q Consensus 192 ~~~~~~~~~~i~~~f~~~~~P~~i~~ 217 (322)
-.+..+.-++++++|.++|.|+....
T Consensus 254 f~ri~~ia~~Vv~TF~iiw~P~~~~~ 279 (510)
T KOG2575|consen 254 FARIIKIALAVVGTFVIIWLPFLLSG 279 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56788888999999999999997543
No 58
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=22.13 E-value=4.5e+02 Score=21.59 Aligned_cols=32 Identities=6% Similarity=-0.170 Sum_probs=17.3
Q ss_pred hhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHH
Q psy7555 188 KRNIEIRLCIVAMGVIGLWFISWTPYATIALM 219 (322)
Q Consensus 188 ~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~ 219 (322)
....+++.-+.+....+.+.+...+..+..+.
T Consensus 88 ~~~~~~~~~r~~~~~~i~~~i~~i~~~~~l~~ 119 (248)
T PF11368_consen 88 NEEYYRKMNRKLEYATIFFNISIIISFLSLFI 119 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555
No 59
>PF15102 TMEM154: TMEM154 protein family
Probab=20.91 E-value=22 Score=26.31 Aligned_cols=8 Identities=25% Similarity=0.443 Sum_probs=3.5
Q ss_pred hhhhhhhh
Q psy7555 151 CAAWVIPF 158 (322)
Q Consensus 151 ~~~~~~p~ 158 (322)
++..++|+
T Consensus 58 iLmIlIP~ 65 (146)
T PF15102_consen 58 ILMILIPL 65 (146)
T ss_pred EEEEeHHH
Confidence 33444553
Done!