RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7555
(322 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 122 bits (308), Expect = 4e-33
Identities = 52/203 (25%), Positives = 96/203 (47%), Gaps = 4/203 (1%)
Query: 52 GCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLD-PLKTTRNRSRLWILFLWLYGSFF 110
C++ GF+ + G SI L +I++DRY +V+PL T R+++ IL +W+
Sbjct: 50 LCKLVGFLFVVNGYASILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLL 109
Query: 111 ASLPLVSSKFRYVPEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYVRICM 170
+ PL+ S R V EG +T+C D+ + + + L +V+P +I CY I
Sbjct: 110 SLPPLLFSWLRTVEEGNVTTCLIDFP-EESTKRSYTLLSTLLGFVLPLLVILVCYTLILR 168
Query: 171 IVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDYHQY--I 228
+ K S + A ++ + E + + + V+ ++ + W PY + L+ +
Sbjct: 169 TLRKRARSGASQARAKRSSSKERKAAKMLLVVVVVFVLCWLPYHIVLLLDSLCPLSIWRL 228
Query: 229 TPLSSMIPALFCKAASCIDPYIY 251
P + +I SC++P IY
Sbjct: 229 LPTALLITLWLAYVNSCLNPIIY 251
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 44.4 bits (105), Expect = 4e-05
Identities = 50/233 (21%), Positives = 94/233 (40%), Gaps = 24/233 (10%)
Query: 53 CEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLK-TTRNRSRLWILFLWLYGSFFA 111
C+I + + S+ + +++DRY +V+P+ K T + L +W+ S
Sbjct: 111 CKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWII-SIIE 169
Query: 112 SLPLVSSKFRYVPEGFLTSCSFDYLASDVWTKGFILTFFCA-AWVIPFFIITFCYVRICM 170
+ P++ L C F + W K FI +IP I+ +CY +I +
Sbjct: 170 TTPILFVYTTKKDHETLICCMFYNNKTMNW-KLFINFEINIIGMLIPLTILLYCYSKILI 228
Query: 171 IVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYAT-IALMGIFD------ 223
+ S K+ I++ L IV + VI + + + + ++
Sbjct: 229 TLKGINKSKK------NKKAIKLVLIIVILFVIFWLPFNVSVFVYSLHILHFKSGCKAVK 282
Query: 224 YHQYITPLSSMIPALFCKAASCIDPYIYAITHPRF---KRELIKMFCYNNKKD 273
Y QY ++ +I C CI+P IYA F K++ +K+ ++ K
Sbjct: 283 YIQYALHVTEIISLSHC----CINPLIYAFVSEFFNKHKKKSLKLMFTSSGKS 331
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 41.0 bits (96), Expect = 4e-04
Identities = 53/209 (25%), Positives = 84/209 (40%), Gaps = 26/209 (12%)
Query: 74 IALDRYYVVVYPLDPLKTTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVPE-GFLTSCS 132
I++DRY +VV + + S L + W+ + +V YV L C
Sbjct: 119 ISIDRYILVVNATKIKNKSISLSVLLSVAAWVCSVILSMPAMV---LYYVDNTDNLKQCI 175
Query: 133 F-DYLASDVWTKGFILTFFCAAWVIPFFIITFCYVRICMIVIKSGMSASRHAAEQKKRNI 191
F DY + W+ F VIP I+ +CY +I + +K+ + ++ R+I
Sbjct: 176 FNDYHENFSWSAFFNFEINIFGIVIPLIILIYCYSKI-LYTLKNCKNKNK------TRSI 228
Query: 192 EIRLCIVAMGVIGLWFISWTPY---------ATIALMGIFDYHQYITPLSSMIPALFCKA 242
+I L +V V+ W P+ ++ L+ I YH S I L
Sbjct: 229 KIILTVVTFTVV-----FWVPFNIVLFINSLQSVGLIDIGCYHFKKIVYSIDIAELISFV 283
Query: 243 ASCIDPYIYAITHPRFKRELIKMFCYNNK 271
C++P IYA FK+ MFC N
Sbjct: 284 HCCVNPIIYAFVGKNFKKVFKNMFCRTNN 312
>gnl|CDD|220691 pfam10323, 7TM_GPCR_Srv, Serpentine type 7TM GPCR chemoreceptor
Srv. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srv is a member of the
Srg superfamily of chemoreceptors. Chemoperception is
one of the central senses of soil nematodes like C.
elegans which are otherwise 'blind' and 'deaf'.
Length = 283
Score = 39.9 bits (94), Expect = 9e-04
Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 12/140 (8%)
Query: 63 TGTVSITTLASIALDRYYVVVYPLDPLKTTRNRSRLW--ILFLWLYGSFFASLPLVSSKF 120
T + T ++ ++ +RY + +P+ L +RLW IL WL G + + L ++
Sbjct: 85 TLYIRCTGISFLSTNRYLAICFPISRLTKIWQSARLWKIILIYWLPGLLISLVVLKNTDI 144
Query: 121 RYV-PEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYVRICMIVIKSGMSA 179
Y E D + + C Y + ++ K
Sbjct: 145 YYDNEENMPVVADKDVIQRFTLIALIFVFVTC-------IYCIIAYGALFFVIRKKFNKN 197
Query: 180 SRHAAEQKKRNIEIRLCIVA 199
S+ ++ KR E+RL
Sbjct: 198 SQTKSKSLKR--EVRLAFQV 215
>gnl|CDD|148201 pfam06450, NhaB, Bacterial Na+/H+ antiporter B (NhaB). This family
consists of several bacterial Na+/H+ antiporter B (NhaB)
proteins. The exact function of this family is unknown.
Length = 515
Score = 29.8 bits (67), Expect = 2.2
Identities = 30/125 (24%), Positives = 61/125 (48%), Gaps = 26/125 (20%)
Query: 145 FILTFFCAAWV-IPFFIITF-----CY-------VRICMIVIKSGMSASRHAAEQKKRNI 191
F+++ F A W+ + FI T CY + I + I GM++++H + N+
Sbjct: 37 FLISPFVAGWLLVAEFIFTLAMALKCYPLQPGGLLAIEAVAI--GMTSAKHVKHEIMANL 94
Query: 192 EIRLCIVAMGVIGLWFISWTPYATIALMGIFDYHQYITPLSS--MIPALFCKAASCIDPY 249
E+ L +V M V G++F+ + +F + + + + S ++ FC AA+ + +
Sbjct: 95 EVLLLLVFM-VAGIYFMKQ--------LLLFIFTKLLLKIRSKILLSLAFCFAAAFLSAF 145
Query: 250 IYAIT 254
+ A+T
Sbjct: 146 LDALT 150
>gnl|CDD|220695 pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR chemoreceptor
Srx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srx is part of the Srg
superfamily of chemoreceptors. Chemoperception is one of
the central senses of soil nematodes like C. elegans
which are otherwise 'blind' and 'deaf'.
Length = 275
Score = 29.5 bits (67), Expect = 2.3
Identities = 30/143 (20%), Positives = 55/143 (38%), Gaps = 14/143 (9%)
Query: 55 IYGFIGGLTG----TVSITTLASIALDRYYVVVYPL--DPLKTTRNRSRLWILFLWLYGS 108
+ IGGL +S T I+L+R+ V +P + + +N +++ I F+W+
Sbjct: 65 LNSHIGGLILLGLYEISPLTHLLISLNRFCAVFFPFKYKKIFSIKN-TKIIITFIWIIAI 123
Query: 109 FFASLPLVSS--KFRYVPEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYV 166
++L F Y PE ++ + + F V+ I V
Sbjct: 124 IISTLFYFPLGCHFYYSPESL----TWSFDEDPPCAEIGWYGDFLKNLVL-VIITNIINV 178
Query: 167 RICMIVIKSGMSASRHAAEQKKR 189
+ + K +S + E KKR
Sbjct: 179 ITFIKLRKFSKKSSLSSEESKKR 201
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 29.2 bits (65), Expect = 2.9
Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 25/124 (20%)
Query: 156 IPFFIITFCYVRICMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYAT 215
IP I FCY++I + + +Q K++ + + I+ +I I W P
Sbjct: 284 IPIIIFAFCYIKIILKL------------KQLKKSKKTKSIIIVSIIIICSLICWIPLNI 331
Query: 216 IALMG-IFDYHQYITPLSSMI--------PALFCKAAS----CIDPYIYAITHPRFKREL 262
+ L ++ + + + +S I + +A S CI+P IY + F+ L
Sbjct: 332 VILFATMYSFKGFNSIISEHICGFIKLGYAMMLAEAISLTHCCINPLIYTLIGENFRMHL 391
Query: 263 IKMF 266
+ +F
Sbjct: 392 LMIF 395
>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein
Tyrosine Kinase, Janus kinase 1. Protein Tyrosine
Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic
(c) domain (repeat 2). The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Jak1 is a member of the
Janus kinase (Jak) subfamily of proteins, which are
cytoplasmic (or nonreceptor) tyr kinases containing an
N-terminal FERM domain, followed by a Src homology 2
(SH2) domain, a pseudokinase domain, and a C-terminal
tyr kinase domain. Jaks are crucial for cytokine
receptor signaling. They are activated by
autophosphorylation upon cytokine-induced receptor
aggregation, and subsequently trigger downstream
signaling events such as the phosphorylation of signal
transducers and activators of transcription (STATs).
Jak1 is widely expressed in many tissues. Many cytokines
are dependent on Jak1 for signaling, including those
that use the shared receptor subunits common gamma chain
(IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6,
IL-11, oncostatin M, G-CSF, and IFNs, among others). The
many varied interactions of Jak1 and its ubiquitous
expression suggest many biological roles. Jak1 is
important in neurological development, as well as in
lymphoid development and function. It also plays a role
in the pathophysiology of cardiac hypertrophy and heart
failure. A mutation in the ATP-binding site of Jak1 was
identified in a human uterine leiomyosarcoma cell line,
resulting in defective cytokine induction and antigen
presentation, thus allowing the tumor to evade the
immune system.
Length = 284
Score = 29.1 bits (65), Expect = 3.3
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 115 LVSSKFRYVPEGFLTSCSFDYLASDVWTKGFIL 147
L S F Y PE L F Y+ASDVW+ G L
Sbjct: 172 LDSPVFWYAPE-CLIQSKF-YIASDVWSFGVTL 202
>gnl|CDD|204446 pfam10322, 7TM_GPCR_Sru, Serpentine type 7TM GPCR chemoreceptor
Sru. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Sru is a member of the
Srg superfamily of chemoreceptors. Chemoperception is
one of the central senses of soil nematodes like C.
elegans which are otherwise 'blind' and 'deaf'.
Length = 307
Score = 29.1 bits (66), Expect = 3.4
Identities = 19/123 (15%), Positives = 46/123 (37%), Gaps = 11/123 (8%)
Query: 139 DVWTKGFILTFFCAAWVIPFFIITFCYVRICMIV-IKSGMSASRHAAEQKKRNIEIRLCI 197
W+I I+ + + K +S++R + + +K I + L
Sbjct: 192 FGLKNSIFHLLNSVFWLILCLILNI--LLFVKLRKAKLKLSSNRTSKKSRKAEISLTLTT 249
Query: 198 VAMGVIGLWFISWTPYATIALMGIFDYHQYITPLSSMIPALFCKAASCIDPYIYAITHPR 257
++M + + +++ +F T + +C+ P+++ +THP
Sbjct: 250 ISM------ILPYITNGIFSIVFLFFP--SYTSYILFLRPFGNDLETCVVPWVFYLTHPI 301
Query: 258 FKR 260
FK+
Sbjct: 302 FKK 304
>gnl|CDD|202997 pfam04392, ABC_sub_bind, ABC transporter substrate binding protein.
This family contains many hypothetical proteins and
some ABC transporter substrate binding proteins.
Length = 292
Score = 28.5 bits (64), Expect = 4.1
Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 9/85 (10%)
Query: 51 SGCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLKTTRNRSRLWILFLWLYGSFF 110
SG ++ + + + + S + + P D L + + L +
Sbjct: 158 SGIKVVEA--AVPSSNDVPSAMSSMAGKVDAIFIPTDNLIASAFTA-------VLQEANK 208
Query: 111 ASLPLVSSKFRYVPEGFLTSCSFDY 135
A +P+++S V G + DY
Sbjct: 209 AKIPVITSDTSSVERGACAAVGVDY 233
>gnl|CDD|223017 PHA03235, PHA03235, DNA packaging protein UL33; Provisional.
Length = 409
Score = 28.2 bits (63), Expect = 5.6
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 20/93 (21%)
Query: 26 TLPNTYAAVLNKGIIHGSYQRMLIVSGCEIYGFIGGLTGTVSITTLASIALDRYYVVVYP 85
LP + + N+G++ GS V+GC+ + + TV T+A IA DRY V+
Sbjct: 86 VLP--FIMLSNQGLLSGS------VAGCKFASLLYYASCTVGFATVALIAADRYRVI--- 134
Query: 86 LDPLKTTRNRSRLW------ILFLWLYGSFFAS 112
+ TR RS + + W +
Sbjct: 135 ---HQRTRARSSAYRSTYKILGLTWFASLICSG 164
>gnl|CDD|187845 cd09714, Cas8c'_I-D, CRISPR/Cas system-associated protein Cas8c'.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Large proteins, some contain Zn-finger domain; signature
gene for I-C subtype; also known as Csx13_C family.
Length = 152
Score = 27.5 bits (61), Expect = 6.3
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 257 RFKRELIKMFCYNNKKDLTRTQYYEQPV-------WRTRASRTYDRSYASSENQLNRDNG 309
R + EL KM + D Q++ Q + A+ T +R+ + ++L R+N
Sbjct: 30 RERDELNKMIENSEIWDGEAEQWFVQSFHEALRRIYAKIAADTKERAPETLGDRLKRENE 89
Query: 310 VIQADINRCKT 320
I + + R KT
Sbjct: 90 RIYSSLARAKT 100
>gnl|CDD|132525 TIGR03486, cas_csx13_C, CRISPR-associated protein Cas8a1/Csx13,
MYXAN subtype, C-terminal region. Members of this
family are found among cas (CRISPR-Associated) genes
close to CRISPR repeats in Leptospira interrogans (a
spirochete), Myxococcus xanthus (a
delta-proteobacterium), and Lyngbya sp. PCC 8106 (a
cyanobacterium). It is found with other cas genes in
Anabaena variabilis ATCC 29413. In Lyngbya sp., the
protein is split into two tandem genes. This model
corresponds to the C-terminal region or upstream gene;
the N-terminal region is modelled by TIGR03485.
CRISPR/cas systems are associated with prokaryotic
acquired resistance to phage and other exogenous DNA.
Length = 152
Score = 27.5 bits (61), Expect = 6.6
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 7/71 (9%)
Query: 257 RFKRELIKMFCYNNKKDLTRTQYYEQPV-------WRTRASRTYDRSYASSENQLNRDNG 309
R + EL KM + D Q++ Q + AS T R + ++ R+N
Sbjct: 30 RERDELNKMIENSEIWDSEAEQWFVQSFHEALRRIYAKIASHTKRRGSETLGDRWKRENE 89
Query: 310 VIQADINRCKT 320
I + + R KT
Sbjct: 90 RIYSSLARAKT 100
>gnl|CDD|226748 COG4298, COG4298, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 95
Score = 26.4 bits (58), Expect = 7.0
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 15/52 (28%)
Query: 94 NRSRLWILFLWLYGSFFASLPLVSSKFRYVPEGFLTSCSFDYLASDVWTKGF 145
N S WI+F W +F AS F+ L D+WTKG+
Sbjct: 11 NDSPAWIMFNWA--AFGASY-------------FMLGLGIWLLPVDLWTKGY 47
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.140 0.450
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,592,584
Number of extensions: 1601261
Number of successful extensions: 1986
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1965
Number of HSP's successfully gapped: 76
Length of query: 322
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 225
Effective length of database: 6,635,264
Effective search space: 1492934400
Effective search space used: 1492934400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (26.4 bits)