RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7555
(322 letters)
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 214 bits (546), Expect = 2e-67
Identities = 57/218 (26%), Positives = 103/218 (47%), Gaps = 6/218 (2%)
Query: 52 GCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLKTTRNRSRLWILFLWLYGSFFA 111
GC + GF L G +++ +L +A++RY VV P+ + N + + + F W+ A
Sbjct: 110 GCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACA 169
Query: 112 SLPLVSSKFRYVPEGFLTSCSFDYL--ASDVWTKGFILTFFCAAWVIPFFIITFCYVRIC 169
+ PLV RY+PEG SC DY + + F++ F ++IP +I FCY ++
Sbjct: 170 APPLVGWS-RYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL- 227
Query: 170 MIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDYHQYIT 229
V +A++ + E + + + ++ + I W PYA +A
Sbjct: 228 --VFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFG 285
Query: 230 PLSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFC 267
P+ IPA F K ++ +P IY + + +F+ ++ C
Sbjct: 286 PIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLC 323
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 213 bits (544), Expect = 4e-66
Identities = 76/226 (33%), Positives = 128/226 (56%), Gaps = 11/226 (4%)
Query: 52 GCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLKT-TRNRSRLWILFLWLYGSFF 110
C++YGFIGG+ G +SI T+A I++DRY V+ P+ K + R+ + I+F+WL+ +
Sbjct: 107 ACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLW 166
Query: 111 ASLPLVSSKFRYVPEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYVRICM 170
A P+ Y EG L +CSFDY++ D T+ IL F + P II FCY I M
Sbjct: 167 AIGPIFGWG-AYTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVM 225
Query: 171 IVIKSG---------MSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGI 221
V ++A Q N E+RL +++ ++ + +SW+PYA +AL+
Sbjct: 226 SVSNHEKEMAAMAKRLNAKELRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQ 285
Query: 222 FDYHQYITPLSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFC 267
F +++TP ++ +P +F KA++ +P IY+++HP+F+ + + F
Sbjct: 286 FGPLEWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFP 331
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 115 bits (291), Expect = 5e-30
Identities = 42/307 (13%), Positives = 113/307 (36%), Gaps = 22/307 (7%)
Query: 4 YILDLNTS-ILLPALCMPITLPNTLPNTYAAVLNKGIIHGSYQRMLIVSGCEIYGFIGGL 62
++++L + + A + + N + +G + C+ + F
Sbjct: 70 FLVNLAFAEASMAAFNTVVNFTYAVHNEW--------YYGLF-------YCKFHNFFPIA 114
Query: 63 TGTVSITTLASIALDRYYVVVYPLDPLKTTRNRSRLWILFLWLYGSFFASLP-LVSSKFR 121
SI ++ ++A DRY +++PL P + + +++ I +W+ + + P S
Sbjct: 115 AVFASIYSMTAVAFDRYMAIIHPLQP-RLSATATKVVICVIWV-LALLLAFPQGYYSTTE 172
Query: 122 YVPEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYVRICMIVIKSGMSASR 181
+P + + + ++ K + + + +P +I + Y + + + S +
Sbjct: 173 TMPSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLWASEIPGDS 232
Query: 182 HAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDYHQYITPLSSMI-PALFC 240
++ + + ++ + + V+ + I W P+ L+ + Y+ + A+
Sbjct: 233 SDRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMW 292
Query: 241 KAA--SCIDPYIYAITHPRFKRELIKMFCYNNKKDLTRTQYYEQPVWRTRASRTYDRSYA 298
A + +P IY + RF+ F + E R ++ +
Sbjct: 293 LAMSSTMYNPIIYCCLNDRFRLGFKHAFRCCPFISAGDYEGLEMKSTRYLQTQGSVYKVS 352
Query: 299 SSENQLN 305
E ++
Sbjct: 353 RLETTIS 359
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 117 bits (294), Expect = 6e-30
Identities = 42/219 (19%), Positives = 83/219 (37%), Gaps = 10/219 (4%)
Query: 53 CEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLKT-TRNRSRLWILFLWLYGSFFA 111
C+ I S TL ++++DRY + +P+ L T ++++ + +W +
Sbjct: 197 CKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWA-LASVV 255
Query: 112 SLPLVSSKFRYVPEGFLTSCSFDY-LASDVWTKGFILTFFCAAWVIPFFIITFCYVRICM 170
+P+ E C + D W F + F ++++P +I+ CY +
Sbjct: 256 GVPVAIM-GSAQVEDEEIECLVEIPTPQDYWGPVFAICIFLFSFIVPVLVISVCYSLMIR 314
Query: 171 IVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDYHQYITP 230
+ + + ++ R I RL +V V+ ++ WTP L
Sbjct: 315 RLRGVRLLSGSREKDRNLRRI-TRLVLV---VVAVFVGCWTPVQVFVLAQGLGVQPSSET 370
Query: 231 LSSMIPALFCKAA--SCIDPYIYAITHPRFKRELIKMFC 267
+++ SC++P +YA FK K C
Sbjct: 371 AVAILRFCTALGYVNSCLNPILYAFLDENFKACFRKFCC 409
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 87.9 bits (218), Expect = 5e-20
Identities = 43/224 (19%), Positives = 91/224 (40%), Gaps = 16/224 (7%)
Query: 53 CEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLD-PLKTTRNRSRLWILFLWLYGSFFA 111
CE++ + L T SI TL IA+DRY + P TR R+++ I +W + +
Sbjct: 84 CELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVS 143
Query: 112 SLPLVSSKFRYVPEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYVRICMI 171
LP++ +R L V + + + ++ IP I+ F +R+
Sbjct: 144 FLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYRE 203
Query: 172 VIK-------SGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDY 224
+ + + ++ L I ++G++ + W P+ + ++ +F
Sbjct: 204 AKEQIRKIDRASKRKTSRVMLMREHKALKTLGI----IMGVFTLCWLPFFLVNIVNVF-- 257
Query: 225 HQYITPLSSMIPALFCKAA-SCIDPYIYAITHPRFKRELIKMFC 267
++ + P + + A S ++P IY P F++ ++
Sbjct: 258 NRDLVPDWLFVAFNWLGYANSAMNPIIYCR-SPDFRKAFKRLLA 300
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 88.4 bits (219), Expect = 1e-19
Identities = 43/245 (17%), Positives = 86/245 (35%), Gaps = 39/245 (15%)
Query: 53 CEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLD-PLKTTRNRSRLWILFLWLYGSFFA 111
CE + I L T SI TL IA+DRY+ + P T+N++R+ IL +W+ +
Sbjct: 255 CEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTS 314
Query: 112 SLPLVSSKFRYVPEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYVRICMI 171
LP+ +R + + + + + + + ++ +P I+ F Y R+
Sbjct: 315 FLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQE 374
Query: 172 VIK----------------------SGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFIS 209
+ G + K E + ++G + +
Sbjct: 375 AKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLC 434
Query: 210 WTPYATIALMGIFDYHQYITPLSSMIPALFCKAA-------SCIDPYIYAITHPRFKREL 262
W P+ + ++ + ++I S +P IY P F+
Sbjct: 435 WLPFFIVNIVHVI--------QDNLIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFRIAF 485
Query: 263 IKMFC 267
++ C
Sbjct: 486 QELLC 490
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 75.7 bits (186), Expect = 2e-15
Identities = 30/172 (17%), Positives = 60/172 (34%), Gaps = 19/172 (11%)
Query: 53 CEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLKT-TRNRSRLWILFLWLYGSFFA 111
C+ I + S+ LA I+LDRY +V+ + + ++ + +W+ +
Sbjct: 119 CKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWI-PALLL 177
Query: 112 SLP-LVSSKFRYVPEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYVRICM 170
++P + + + C Y +D+W F ++P +I CY C+
Sbjct: 178 TIPDFIFANVSEADDR--YICDRFY-PNDLWVVVFQFQHIMVGLILPGIVILSCY---CI 231
Query: 171 IVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIF 222
I+ K S S + + Y TI + +
Sbjct: 232 IISKLSHSGSNIFEMLRIDEGLRL----------KIYKDTEGYYTIGIGHLL 273
Score = 38.4 bits (89), Expect = 0.002
Identities = 16/116 (13%), Positives = 30/116 (25%), Gaps = 21/116 (18%)
Query: 161 ITFCYVRICMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMG 220
+ + S R + + +I +F W PY +
Sbjct: 389 VITTFRTGTWDAYGSKGHQKR------------KALKTTVILILAFFACWLPYYIGISID 436
Query: 221 IFDYHQYITPLSSMIPAL-----FCKAA----SCIDPYIYAITHPRFKRELIKMFC 267
F + I + +A C++P +YA +FK
Sbjct: 437 SFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALT 492
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 73.9 bits (181), Expect = 8e-15
Identities = 34/172 (19%), Positives = 65/172 (37%), Gaps = 18/172 (10%)
Query: 53 CEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLKT-TRNRSRLWILFLWLYGSFFA 111
C+I I SI TL ++++DRY V +P+ L T +++ + W+ S
Sbjct: 89 CKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWI-LSSAI 147
Query: 112 SLPLVSSKFRYVPEGFLTSCSFDY-LASDVWTKGFILTFFCAAWVIPFFIITFCYVRICM 170
LP++ C+ + + W + F A+++P IIT CY + +
Sbjct: 148 GLPVMFM-ATTKYRQGSIDCTLTFSHPTWYWENLLKICVFIFAFIMPVLIITVCYGLM-I 205
Query: 171 IVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIF 222
+ +KS + + ++I Y TI + +
Sbjct: 206 LRLKSVRNIFEMLRIDEGLRLKIYKN-------------TEGYYTIGIGHLL 244
Score = 45.4 bits (107), Expect = 1e-05
Identities = 16/106 (15%), Positives = 33/106 (31%), Gaps = 5/106 (4%)
Query: 164 CYVRICMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFD 223
R ++ + + R+ +V V+ ++ + WTP ++
Sbjct: 353 TPNRAKRVITTFRTGTWDAYEKDRNLRRITRMVLV---VVAVFIVCWTPIHIYVIIKALI 409
Query: 224 YHQYITPLSSMIPALFCKAA--SCIDPYIYAITHPRFKRELIKMFC 267
T + SC++P +YA FKR +
Sbjct: 410 TIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCFREFCI 455
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 63.6 bits (154), Expect = 2e-11
Identities = 30/139 (21%), Positives = 58/139 (41%), Gaps = 1/139 (0%)
Query: 53 CEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLD-PLKTTRNRSRLWILFLWLYGSFFA 111
CE + I L T SI TL IA+DRY+ + P T+N++R+ IL +W+ +
Sbjct: 113 CEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTS 172
Query: 112 SLPLVSSKFRYVPEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYVRICMI 171
LP+ +R + + + + + + + ++ +P I+ F Y R+
Sbjct: 173 FLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQE 232
Query: 172 VIKSGMSASRHAAEQKKRN 190
+ ++ R
Sbjct: 233 AKRQLNIFEMLRIDEGLRL 251
Score = 32.0 bits (72), Expect = 0.28
Identities = 14/108 (12%), Positives = 38/108 (35%), Gaps = 3/108 (2%)
Query: 174 KSGMSASRHAAEQKKRNIEIRLCIVAMGVI-GLWFISWTPYATIALMGIFDYHQYITPLS 232
+ + + K ++ + +G+I G + + W P+ + ++ + + +
Sbjct: 384 RVITTFRTGTWDAYKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVY 443
Query: 233 SMIPALFCKAASCIDPYIYAITHPRFKRELIKMFCYNNKKDLTRTQYY 280
++ + S +P IY P F+ ++ C Y
Sbjct: 444 ILLNWI-GYVNSGFNPLIYCR-SPDFRIAFQELLCLRRSSLKAYGNGY 489
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 61.7 bits (149), Expect = 8e-11
Identities = 31/174 (17%), Positives = 57/174 (32%), Gaps = 31/174 (17%)
Query: 12 ILLPALCMPITLPNTLPNTYAAVLNKGIIHGSYQRMLIVSGCEIYGFIGGLTGTVSITTL 71
I + L +P +A ++ G + GC + SI +L
Sbjct: 68 IAVGVLAIP----------FAITISTGFCAACH-------GCLFIACFVLVLTQSSIFSL 110
Query: 72 ASIALDRYYVVVYPLD-PLKTTRNRSRLWILFLWLYGSFFASLPLV----------SSKF 120
+IA+DRY + PL T R++ I W+ P++
Sbjct: 111 LAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNH 170
Query: 121 RYVPEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYVRICMIVIK 174
+C F+ V + F A ++P ++ Y+RI + +
Sbjct: 171 SQGCGEGQVACLFE---DVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARR 221
Score = 40.5 bits (94), Expect = 5e-04
Identities = 15/113 (13%), Positives = 38/113 (33%), Gaps = 3/113 (2%)
Query: 173 IKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIF-DYHQYITPL 231
+ + A + E+ ++GL+ + W P I F +
Sbjct: 371 VITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLW 430
Query: 232 SSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFC--YNNKKDLTRTQYYEQ 282
+ + S ++P+IYA F++ K+ +++ + ++
Sbjct: 431 LMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPFKAHHHHH 483
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 60.8 bits (147), Expect = 2e-10
Identities = 30/171 (17%), Positives = 54/171 (31%), Gaps = 25/171 (14%)
Query: 12 ILLPALCMPITLPNTLPNTYAAVLNKGIIHGSYQRMLIVSGCEIYGFIGGLTGTVSITTL 71
I + L +P A ++ G + GC + SI +L
Sbjct: 78 IAVGVLAIPF----------AITISTGFCAACH-------GCLFIACFVLVLTQSSIFSL 120
Query: 72 ASIALDRYYVVVYPLD-PLKTTRNRSRLWILFLWLYGSFFASLPLVSSKFRYVPEGFLTS 130
+IA+DRY + PL T R++ I W+ P++ P+
Sbjct: 121 LAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNH 180
Query: 131 CSFD-------YLASDVWTKGFILTFFCAAWVIPFFIITFCYVRICMIVIK 174
V + F A ++P ++ Y+RI + +
Sbjct: 181 SQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARR 231
Score = 38.5 bits (89), Expect = 0.002
Identities = 21/122 (17%), Positives = 46/122 (37%), Gaps = 6/122 (4%)
Query: 167 RICMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMG---VIGLWFISWTPYATIALMGIFD 223
+ +K+ +A ++ R+ + A ++GL+ + W P I F
Sbjct: 321 QAAAEQLKTTRNAYIQKYLERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFC 380
Query: 224 YHQYITPLSSMIPALFCKAA-SCIDPYIYAITHPRFKRELIKMFC--YNNKKDLTRTQYY 280
PL M A+ S ++P+IYA F++ K+ +++ + ++
Sbjct: 381 PDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPFKAHHH 440
Query: 281 EQ 282
Sbjct: 441 HH 442
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 58.2 bits (140), Expect = 1e-09
Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 4/131 (3%)
Query: 65 TVSITTLASIALDRYYVVVYPLD-PLKTTRNRSRLWILFLWLYGSFFASLPLVSSKFRYV 123
T SI ++ + +DRY V PL T+ R+ IL W SF +P++ + +
Sbjct: 93 TASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFL-SFLWVIPILG--WNHF 149
Query: 124 PEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYVRICMIVIKSGMSASRHA 183
+ F + + +P ++ + Y +I V +
Sbjct: 150 MQQTSVRREDKCETDFYDVTWFKVMTAIINFYLPTLLMLWFYAKIYKAVRQHCNIFEMLR 209
Query: 184 AEQKKRNIEIR 194
++ R +
Sbjct: 210 IDEGLRLKIYK 220
Score = 36.2 bits (83), Expect = 0.012
Identities = 14/103 (13%), Positives = 32/103 (31%), Gaps = 1/103 (0%)
Query: 174 KSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDYHQYITPLSS 233
+ N E + ++ + + W PY ++ F
Sbjct: 350 VITTFRTGTWDAYLHMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFC-KNCCNEHLH 408
Query: 234 MIPALFCKAASCIDPYIYAITHPRFKRELIKMFCYNNKKDLTR 276
M S ++P IY + + FK+ ++ + ++L
Sbjct: 409 MFTIWLGYINSTLNPLIYPLCNENFKKTFKRILHIRSGENLYF 451
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 57.0 bits (137), Expect = 2e-09
Identities = 29/131 (22%), Positives = 43/131 (32%), Gaps = 14/131 (10%)
Query: 65 TVSITTLASIALDRYYVVVYPLD-PLKTTRNRSRLWILFLWLYGSFFASLPLV-----SS 118
S+ L I+ DRY+ V PL P+K T + + I W+ SF P +
Sbjct: 108 NASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVL-SFILWAPAILFWQFIV 166
Query: 119 KFRYVPEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYVRICMIVIKSGMS 178
R V +G F AA+ +P I+T Y I
Sbjct: 167 GVRTVEDG-ECYIQFFS------NAAVTFGTAIAAFYLPVIIMTVLYWHISRASKSRINI 219
Query: 179 ASRHAAEQKKR 189
++ R
Sbjct: 220 FEMLRIDEGLR 230
Score = 35.8 bits (82), Expect = 0.015
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 202 VIGLWFISWTPYATIALMGIFDYHQYITPLSSMIPALFCKAASCIDPYIYAITHPRFKRE 261
++ + I+W PY + L+ F + ++ L C S I+P YA+ + FK+
Sbjct: 393 ILLAFIITWAPYNVMVLINTFCAPCIPNTVWTIGYWL-CYINSTINPACYALCNATFKKT 451
Query: 262 LIKMFC 267
+
Sbjct: 452 FKHLLM 457
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 56.0 bits (134), Expect = 6e-09
Identities = 23/153 (15%), Positives = 49/153 (32%), Gaps = 8/153 (5%)
Query: 39 IIHGSYQRMLIVSGCEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLDPLKTTRNRSRL 98
++ G+ L + + + + S+ +L +IA++RY ++ + R L
Sbjct: 121 LLSGATTYKLTPAQWFLREGSMFVALSASVFSLLAIAIERYITMLKMKLHNGSNNFRLFL 180
Query: 99 WILFLWLYGSFFASLPLVSSKFRYVPEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPF 158
I W+ LP++ + + S + F + +
Sbjct: 181 LISACWVISLILGGLPIMG--WNCISALSSCSTVL------PLYHKHYILFCTTVFTLLL 232
Query: 159 FIITFCYVRICMIVIKSGMSASRHAAEQKKRNI 191
I Y RI +V + E + I
Sbjct: 233 LSIVILYCRIYSLVRTRNIFEMLRIDEGLRLKI 265
Score = 38.3 bits (88), Expect = 0.003
Identities = 13/103 (12%), Positives = 33/103 (32%), Gaps = 1/103 (0%)
Query: 166 VRICMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIF-DY 224
+ + A + + + L + V+ ++ W P + L+ +
Sbjct: 390 TPNRAKRVITTFRTGTWDAYASRSSENVALLKTVIIVLSVFIACWAPLFILLLLDVGCKV 449
Query: 225 HQYITPLSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFC 267
+ + S +P IY +T+ +R I++
Sbjct: 450 KTCDILFRAEYFLVLAVLNSGTNPIIYTLTNKEMRRAFIRIMG 492
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 55.1 bits (132), Expect = 1e-08
Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 15/126 (11%)
Query: 53 CEIYGFIGGLTGTVSITTLASIALDRYYVVVYPLD----PLKTTRNRSRLWILFLWLYGS 108
C+++ + + T SI L +I++DRY VV P+ +++ R L I +W+ +
Sbjct: 112 CDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVL-A 170
Query: 109 FFASLPLVSSKFRYVPEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFCYVRI 168
F S PL+ CS F++ ++ +PF + Y RI
Sbjct: 171 FAVSCPLLFGFNTTGDPT---VCSIS-------NPDFVIYSSVVSFYLPFGVTVLVYARI 220
Query: 169 CMIVIK 174
+++ +
Sbjct: 221 YVVLKQ 226
Score = 35.1 bits (80), Expect = 0.026
Identities = 10/95 (10%), Positives = 33/95 (34%), Gaps = 1/95 (1%)
Query: 174 KSGMSASRHAAEQKKRNIEIRLCIVAMGVI-GLWFISWTPYATIALMGIFDYHQYITPLS 232
+ + + + + + ++ G + + W P+ ++ +++P
Sbjct: 377 RVITTFRTGTWDAYGVPLREKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQTCHVSPEL 436
Query: 233 SMIPALFCKAASCIDPYIYAITHPRFKRELIKMFC 267
S ++P IY + F++ +K+
Sbjct: 437 YSATTWLGYVNSALNPVIYTTFNIEFRKAFLKILS 471
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.010
Identities = 40/266 (15%), Positives = 75/266 (28%), Gaps = 76/266 (28%)
Query: 29 NTYAAVLNKGIIHGSYQRMLIVSGCEIYGFIGGLTGTVSITTLASIALDR-YYVVVYPLD 87
+ VLN + ++ + G +I+ L T + + L + Y
Sbjct: 78 GQFDQVLNLCLTE--FENC-YLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAK 134
Query: 88 PLKTTRNRSRLW--------ILFLWLYG------SFFASL--------PLVSSKFRYVPE 125
++ S L+ L ++G +F L LV ++ E
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLVA-IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAE 193
Query: 126 GFLTSCSFDYLASDVWTKGF-ILT------------FFCAAWV-IPF-FIITFC-YVRIC 169
A V+T+G IL + + + P +I YV
Sbjct: 194 TLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTA 253
Query: 170 MI-------VIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGI- 221
+ + A+ H+ +V I SW + I
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQG-----------LVTAVAIAE-TDSWESFFVSVRKAIT 301
Query: 222 --FDYHQYI-------TPLSSMIPAL 238
F +I P +S+ P++
Sbjct: 302 VLF----FIGVRCYEAYPNTSLPPSI 323
Score = 35.8 bits (82), Expect = 0.022
Identities = 35/164 (21%), Positives = 54/164 (32%), Gaps = 46/164 (28%)
Query: 26 TLPNTY--AAVLNKGIIHG----SYQRMLIVSGC---EIYGFIGGLTGTVSITTLASIAL 76
PNT ++L + + S ML +S ++ ++ + I+L
Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSP--MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL 370
Query: 77 ---DRYYVVV-YP--LDPLKTT-R--------NRSRLWILF----LWLYGSFFASLPLVS 117
+ VV P L L T R ++SR I F L F LP V+
Sbjct: 371 VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR--IPFSERKLKFSNRF---LP-VA 424
Query: 118 SKF--RYVPEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFF 159
S F L S D + D+ +F IP +
Sbjct: 425 SPFHSHL-----LVPAS-DLINKDLVKNNV--SFNAKDIQIPVY 460
Score = 35.4 bits (81), Expect = 0.025
Identities = 36/242 (14%), Positives = 63/242 (26%), Gaps = 69/242 (28%)
Query: 96 SRLWILFLWLYGSFFASLPLVSSKFRY------VPEGFLTSCSF-DYLASDVWTKGFILT 148
+ + + L F LP + F E L F Y++S V
Sbjct: 24 TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE--LVG-KFLGYVSSLVEPSKVGQF 80
Query: 149 FFCAAWVIPFFIITFCYVR-ICMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWF 207
+ F + I + + + K + + I+
Sbjct: 81 DQVLNLCLTEFENCYLEGNDIHALA--AKLLQENDTTLVKTKEL-IK------------- 124
Query: 208 ISWTPYATIALMGIFDYHQYITPLSSMIP-ALFCKAASCIDPYIYAI------THPRFKR 260
+ P ALF +A + + AI T F+
Sbjct: 125 ---NYITARIMAK--------RPFDKKSNSALF-RAVGEGNAQLVAIFGGQGNTDDYFE- 171
Query: 261 ELIKMFC-YN-NKKDLTRT----------------QYYEQPV----WRTRASRTYDRSYA 298
EL ++ Y+ DL + + + Q + W S T D+ Y
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 299 SS 300
S
Sbjct: 232 LS 233
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.040
Identities = 42/310 (13%), Positives = 78/310 (25%), Gaps = 102/310 (32%)
Query: 36 NKGI-IHGSYQRMLIVSGCEIYGFIGGLTGTVSITTLASIALDRYYVV------VYPLDP 88
K + I G +L G G T +A Y V ++ L+
Sbjct: 150 AKNVLIDG----VL---GS----------GK---TWVALDVCLSYKVQCKMDFKIFWLNL 189
Query: 89 LKTTRNRSRLWILFLWLY---------GSFFASLPLVSSKFRYVPEGFLTSCSFDYLAS- 138
+ L +L LY +++ L + L S Y
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL--KSKPYENCL 247
Query: 139 ----DVWTKGFILTFFCAAWVIPFFIITFCYVRICMIVIKSGMSASRHAAEQKKRNIEI- 193
+V F ++ C I++ + R ++
Sbjct: 248 LVLLNVQNA----------KAWNAFNLS------CKILLTT-------------RFKQVT 278
Query: 194 -RLCIVAMGVIGLWFISW--TPYATIALMGIFDYHQYITPLSSMIPALFCKAASCIDPYI 250
L I L S TP +L+ +Y+ +P
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLL-----KYLDCRPQDLPREVLT--------- 324
Query: 251 YAITHPRFKRELIKMFCYNNKKDLTRTQYYEQPVWRTRASRTYDRSYASSENQLNRDN-- 308
T+PR + + + + L ++ V + + + S E R
Sbjct: 325 ---TNPR----RLSIIAESIRDGLATWDNWKH-VNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 309 --GVIQADIN 316
V +
Sbjct: 377 RLSVFPPSAH 386
Score = 28.3 bits (62), Expect = 4.3
Identities = 21/129 (16%), Positives = 33/129 (25%), Gaps = 28/129 (21%)
Query: 219 MGIFDYHQYITPLSSMIPALFCKAASCID--------------PYIYAITHPRFK-RELI 263
G Y Y LS A F C D +I L
Sbjct: 11 TGEHQYQ-YKDILSVFEDA-FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 264 KMFCYNNKK-------DLTRTQY---YEQPVWRTRASRTYDRSYASSENQLNRDNGVI-Q 312
++ ++ R Y R R Y ++L DN V +
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 313 ADINRCKTV 321
+++R +
Sbjct: 129 YNVSRLQPY 137
Score = 27.9 bits (61), Expect = 6.6
Identities = 53/387 (13%), Positives = 100/387 (25%), Gaps = 145/387 (37%)
Query: 13 LLPALCMPITLPNTLP---NTYAAVLNKGIIHGSYQRMLIV--------------SGCEI 55
+ P + + ++ A L + + Y+ L+V C+I
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268
Query: 56 YGFIGGL--TGTVSITTLASIALDRYYVVVYPLDPLKTTRNRSRLWILFLWLYGSFFASL 113
L T +T S A + + + L +S +L +L L
Sbjct: 269 ------LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS---LLLKYL-DCRPQDL 318
Query: 114 --------PLVSSKF-RYVPEGFLTSCSFDYLASDVWTKGFILTFFCAAWVIPFFIITFC 164
P S + +G T ++ ++ D T II
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT----------------II--- 359
Query: 165 YVRICMIVIKSGMSASRHAAEQKKR-----------NI-EIRLCIVAMGVIGLWFIS--- 209
+ V++ AE +K +I I L + +WF
Sbjct: 360 --ESSLNVLEP--------AEYRKMFDRLSVFPPSAHIPTILLSL-------IWFDVIKS 402
Query: 210 -----------------WTPYATIALMGI-FDYHQYITPLSSM---------IPALFCK- 241
+TI++ I + + ++ IP F
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 242 --AASCIDPYIYA-ITHPRFKRELIKMFCYNNKKDLTRTQY-----------YEQPVWRT 287
+D Y Y+ I H E + L R + ++ W
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERM------TLFRMVFLDFRFLEQKIRHDSTAWNA 516
Query: 288 RAS--------RTYDRSYASSENQLNR 306
S + Y ++ + R
Sbjct: 517 SGSILNTLQQLKFYKPYICDNDPKYER 543
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane
protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A
1ho9_A 1hod_A
Length = 32
Score = 30.1 bits (68), Expect = 0.069
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 65 TVSITTLASIALDRYYVVVYPLD-PLKTTRNR 95
T SI L +I+LDRY+ + ++ LK T R
Sbjct: 1 TSSIVHLCAISLDRYWSITQAIEYNLKRTPRR 32
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 27.0 bits (59), Expect = 8.1
Identities = 11/63 (17%), Positives = 18/63 (28%), Gaps = 28/63 (44%)
Query: 155 VIPFFIITFCYVRICMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYA 214
V P RI +S E + + +V I++ P+
Sbjct: 141 VPPLI-------RI--------VSG----LELSDTKQKGKKFLV---------IAYEPFE 172
Query: 215 TIA 217
IA
Sbjct: 173 NIA 175
>2gsm_A Cytochrome C oxidase subunit 1; transmembrane protein complex,
oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter
sphaeroides} SCOP: f.24.1.1 PDB: 1m56_A* 3dtu_A* 3fye_A*
3fyi_A* 1m57_A* 3oma_A* 3om3_A* 3omi_A* 3omn_A* 3hb3_A*
1ar1_A* 3ehb_A* 1qle_A*
Length = 566
Score = 26.9 bits (60), Expect = 9.6
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 6/32 (18%)
Query: 57 GFI-----GGLTGTVSITTLASIAL-DRYYVV 82
GF+ GG+TG V D YYVV
Sbjct: 386 GFLFLFTVGGVTGIVLSQASVDRYYHDTYYVV 417
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.140 0.450
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,992,870
Number of extensions: 294792
Number of successful extensions: 634
Number of sequences better than 10.0: 1
Number of HSP's gapped: 583
Number of HSP's successfully gapped: 36
Length of query: 322
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 228
Effective length of database: 4,077,219
Effective search space: 929605932
Effective search space used: 929605932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (26.2 bits)