RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7555
         (322 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 75.8 bits (185), Expect = 4e-16
 Identities = 52/206 (25%), Positives = 95/206 (46%), Gaps = 6/206 (2%)

Query: 64  GTVSITTLASIALDRYYVVVYPLDPLKTTRNRSRLWILFLWLYGSFFASLPLVSSKFRYV 123
           G +++ +L  +A++RY VV  P+   +   N + + + F W   +   + P +    RY+
Sbjct: 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTW-VMALACAAPPLVGWSRYI 179

Query: 124 PEGFLTSCSFDY--LASDVWTKGFILTFFCAAWVIPFFIITFCYVRICMIVIKSGMSASR 181
           PEG   SC  DY     +   + F++  F   ++IP  +I FCY ++   V ++      
Sbjct: 180 PEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQE 239

Query: 182 HAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFDYHQYITPLSSMIPALFCK 241
            A  QK      R+ I+   ++  + I W PYA +A            P+   IPA F K
Sbjct: 240 SATTQKAEKEVTRMVII---MVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAK 296

Query: 242 AASCIDPYIYAITHPRFKRELIKMFC 267
            ++  +P IY + + +F+  ++   C
Sbjct: 297 TSAVYNPVIYIMMNKQFRNCMVTTLC 322


>d1vr6a1 c.1.10.4 (A:1-338)
           3-deoxy-D-arabino-heptulosonate-7-phosphate synthase
           (DAHP synthase, AroG) {Thermotoga maritima [TaxId:
           2336]}
          Length = 338

 Score = 28.5 bits (63), Expect = 1.0
 Identities = 13/115 (11%), Positives = 30/115 (26%), Gaps = 16/115 (13%)

Query: 149 FFCAAWVIPFFIITFCYVRICMIVIKSGMSASRHAAEQKKRNIEIRLCIVAMGVIGLWFI 208
              A     F +++        +++K G   +          I                 
Sbjct: 182 QIGARNAQNFRLLSKAGSYNKPVLLKRGFMNTIEEFLLSAEYIANSGN------------ 229

Query: 209 SWTPYATIALMGIFDYHQYITPLSSMIPALFCKAASCIDPYIYAITHPRFKRELI 263
                     +  F+     T   S +P +  +      P +   +H   +R+L+
Sbjct: 230 -TKIILCERGIRTFEKATRNTLDISAVPIIRKE---SHLPILVDPSHSGGRRDLV 280


>d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain
           {Alcaligenes eutrophus [TaxId: 106590]}
          Length = 142

 Score = 26.4 bits (57), Expect = 2.8
 Identities = 16/91 (17%), Positives = 28/91 (30%)

Query: 228 ITPLSSMIPALFCKAASCIDPYIYAITHPRFKRELIKMFCYNNKKDLTRTQYYEQPVWRT 287
           +TP+ SM+          +     A                   ++L    +Y+QP+   
Sbjct: 17  LTPMVSMLKVALQAPPRQVVFVHGARNSAVHAMRDRLREAAKTYENLDLFVFYDQPLPED 76

Query: 288 RASRTYDRSYASSENQLNRDNGVIQADINRC 318
              R YD        Q+ +   +  AD   C
Sbjct: 77  VQGRDYDYPGLVDVKQIEKSILLPDADYYIC 107


>d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester
           phosphodiesterase TTHB141 {Thermus thermophilus [TaxId:
           274]}
          Length = 217

 Score = 25.7 bits (55), Expect = 7.9
 Identities = 17/118 (14%), Positives = 34/118 (28%), Gaps = 5/118 (4%)

Query: 177 MSASRHAAEQKKRNIEIRLCIVAMGVIGLWFISWTPYATIALMGIFD--YHQYITPLSSM 234
           + + R A E     +E+ +     GV  +     TP   +  +   D    +   P    
Sbjct: 18  LESFRLALEAGLDGVELDVWPTRDGVFAVRHDPDTPLGPVFQVDYADLKAQEPDLPRLEE 77

Query: 235 IPALFC---KAASCIDPYIYAITHPRFKRELIKMFCYNNKKDLTRTQYYEQPVWRTRA 289
           + AL     +A   ++   +        R L  +        ++          R  A
Sbjct: 78  VLALKEAFPQAVFNVELKSFPGLGEEAARRLAALLRGREGVWVSSFDPLALLALRKAA 135


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.140    0.450 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,242,257
Number of extensions: 57933
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 10
Length of query: 322
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 237
Effective length of database: 1,240,546
Effective search space: 294009402
Effective search space used: 294009402
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.7 bits)