BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7557
(936 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 269 bits (687), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 161/405 (39%), Positives = 233/405 (57%), Gaps = 22/405 (5%)
Query: 47 KNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQA 106
K N+I V V SD +P P+ F A I+ + + P+PIQ +
Sbjct: 38 KYNNIPVKVTGSD----------VPQPIQHFTSA-DLRDIIIDNVNKSGYKIPTPIQKCS 86
Query: 107 WPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAG-PSVLVMAPTRELATQ 165
P++ SG D++ AQTG+GKT AFLLP L + L P G P V++++PTRELA Q
Sbjct: 87 IPVISSGRDLMACAQTGSGKTAAFLLPIL--SKLLEDPHELELGRPQVVIVSPTRELAIQ 144
Query: 166 IEREVNKIDYKG-LKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAV 224
I E K ++ LK VYGG Q E I GCH++IATPGRL DFV R I +
Sbjct: 145 IFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDT 204
Query: 225 SFVVLDEADRMLDLGFEPQINK--TSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKV 282
FVVLDEADRMLD+GF + + T + + P QT+M SAT+ +++QR+A +++ N V V
Sbjct: 205 RFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFV 264
Query: 283 NVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDL 342
+G + A V Q I +++ K+ L+E + E+ D +VF+ K ++S L
Sbjct: 265 AIGIVG-GACSDVKQTIYEVNKYAKRSKLIEI---LSEQADGTIVFVETKRGADFLASFL 320
Query: 343 ACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSH 402
+ + + S++GD Q RE AL D +G ++ +AT VASRGLD+ ++ HVINYD PS
Sbjct: 321 SEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSK 380
Query: 403 IEEYVHRVGRTGRAGKSGESITLM-TRKDWSHAHEIIPILEEGGH 446
I++YVHR+GRTGR G +G + + KD + A +++ ILE G
Sbjct: 381 IDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQ 425
Score = 254 bits (648), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 151/372 (40%), Positives = 216/372 (58%), Gaps = 21/372 (5%)
Query: 567 KNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQA 626
K N+I V V SD +P P+ F A I+ + + P+PIQ +
Sbjct: 38 KYNNIPVKVTGSD----------VPQPIQHFTSA-DLRDIIIDNVNKSGYKIPTPIQKCS 86
Query: 627 WPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAG-PSVLVMAPTRELATQ 685
P++ SG D++ AQTG+GKT AFLLP L + L P G P V++++PTRELA Q
Sbjct: 87 IPVISSGRDLMACAQTGSGKTAAFLLPIL--SKLLEDPHELELGRPQVVIVSPTRELAIQ 144
Query: 686 IEREVNKIDYKG-LKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAV 744
I E K ++ LK VYGG Q E I GCH++IATPGRL DFV R I +
Sbjct: 145 IFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDT 204
Query: 745 SFVVLDEADRMLDLGFEPQINK--TSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKV 802
FVVLDEADRMLD+GF + + T + + P QT+M SAT+ +++QR+A +++ N V V
Sbjct: 205 RFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFV 264
Query: 803 NVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDL 862
+G + A V Q I +++ K+ L+E + E+ D +VF+ K ++S L
Sbjct: 265 AIGIVG-GACSDVKQTIYEVNKYAKRSKLIEI---LSEQADGTIVFVETKRGADFLASFL 320
Query: 863 ACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSH 922
+ + + S++GD Q RE AL D +G ++ +AT VASRGLD+ ++ HVINYD PS
Sbjct: 321 SEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSK 380
Query: 923 IEEYVHRVGRTG 934
I++YVHR+GRTG
Sbjct: 381 IDDYVHRIGRTG 392
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 260 bits (665), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 145/378 (38%), Positives = 220/378 (58%), Gaps = 19/378 (5%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH------- 139
I+ +E +T P+P+Q A PI+ D++ AQTG+GKT AFLLP L +
Sbjct: 26 IMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEA 85
Query: 140 LQTTPISERAG-----PSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGGKEIEPQL 193
L+ + R G P LV+APTRELA QI E K Y+ ++ VYGG +I Q+
Sbjct: 86 LRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQI 145
Query: 194 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT----SI 249
+ GCH+L+ATPGRL D + R I L ++VLDEADRMLD+GFEPQI + ++
Sbjct: 146 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTM 205
Query: 250 YINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKD 309
R T+M SAT+ K++Q +A+ ++ + + VG + + + +TQK++ ++E +K+
Sbjct: 206 PPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEESDKRS 264
Query: 310 WLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDIT 369
+L++ N + +VF+ K ++ L + S++GD SQ DRE AL
Sbjct: 265 FLLDLL-NATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 323
Query: 370 SGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRK 429
SG + I VAT VA+RGLD+ ++ HVIN+D PS IEEYVHR+GRTGR G G + + +
Sbjct: 324 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNER 383
Query: 430 DWSHAHEIIPILEEGGHE 447
+ + +++ +L E E
Sbjct: 384 NINITKDLLDLLVEAKQE 401
Score = 249 bits (636), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 138/345 (40%), Positives = 205/345 (59%), Gaps = 19/345 (5%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH------- 659
I+ +E +T P+P+Q A PI+ D++ AQTG+GKT AFLLP L +
Sbjct: 26 IMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEA 85
Query: 660 LQTTPISERAG-----PSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGGKELEPQL 713
L+ + R G P LV+APTRELA QI E K Y+ ++ VYGG ++ Q+
Sbjct: 86 LRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQI 145
Query: 714 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT----SI 769
+ GCH+L+ATPGRL D + R I L ++VLDEADRMLD+GFEPQI + ++
Sbjct: 146 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTM 205
Query: 770 YINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKD 829
R T+M SAT+ K++Q +A+ ++ + + VG + + + +TQK++ ++E +K+
Sbjct: 206 PPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEESDKRS 264
Query: 830 WLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDIT 889
+L++ N + +VF+ K ++ L + S++GD SQ DRE AL
Sbjct: 265 FLLDLL-NATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 323
Query: 890 SGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
SG + I VAT VA+RGLD+ ++ HVIN+D PS IEEYVHR+GRTG
Sbjct: 324 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTG 368
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 238 bits (607), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 109/217 (50%), Positives = 156/217 (71%), Gaps = 4/217 (1%)
Query: 590 IPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 649
IP P FK AFQ YP++L+ + + P+PIQ+QAWPI++ G D+I +AQTGTGKT +
Sbjct: 14 IPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLS 73
Query: 650 FLLPALIHTHLQTTPIS--ERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGK 707
+L+P I HL + PIS +R GP +LV+ PTRELA +E E +K YKGLK++C+YGG+
Sbjct: 74 YLMPGFI--HLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGR 131
Query: 708 ELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT 767
Q+E I +G I+IATPGRLND S++L++++++V+DEAD+MLD+ FEPQI K
Sbjct: 132 NRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKI 191
Query: 768 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNV 804
+ + P+RQTVMTSATW V+++A Y+ +P+ V V
Sbjct: 192 LLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228
Score = 238 bits (606), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 109/217 (50%), Positives = 156/217 (71%), Gaps = 4/217 (1%)
Query: 70 IPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 129
IP P FK AFQ YP++L+ + + P+PIQ+QAWPI++ G D+I +AQTGTGKT +
Sbjct: 14 IPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLS 73
Query: 130 FLLPALIHTHLQTTPIS--ERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGK 187
+L+P I HL + PIS +R GP +LV+ PTRELA +E E +K YKGLK++C+YGG+
Sbjct: 74 YLMPGFI--HLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGR 131
Query: 188 EIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT 247
Q+E I +G I+IATPGRLND S++L++++++V+DEAD+MLD+ FEPQI K
Sbjct: 132 NRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKI 191
Query: 248 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNV 284
+ + P+RQTVMTSATW V+++A Y+ +P+ V V
Sbjct: 192 LLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 218 bits (556), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 114/270 (42%), Positives = 171/270 (63%), Gaps = 20/270 (7%)
Query: 540 PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQ 599
PK KN Y+E P++A T ++VE +R+ +T G P PV +F +
Sbjct: 1 PKFEKNFYQEHPDLARRTAQEVETYRRSKE------ITVRGH-------NCPKPVLNFYE 47
Query: 600 AFQHYP-EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHT 658
A ++P ++ + +FT P+ IQAQ WP+ +SG DM+G+AQTG+GKT ++LLPA++H
Sbjct: 48 A--NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHI 105
Query: 659 HLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGGKELEPQLEKI 716
+ Q P ER GP LV+APTRELA Q+++ + LK+ C+YGG PQ+ +
Sbjct: 106 NHQ--PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDL 163
Query: 717 REGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQ 776
G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFEPQI K I P+RQ
Sbjct: 164 ERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 223
Query: 777 TVMTSATWNKDVQRVAKKYMVNPVKVNVGS 806
T+M SATW K+V+++A+ ++ + + +N+G+
Sbjct: 224 TLMWSATWPKEVRQLAEDFLKDYIHINIGA 253
Score = 218 bits (556), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 114/270 (42%), Positives = 171/270 (63%), Gaps = 20/270 (7%)
Query: 20 PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQ 79
PK KN Y+E P++A T ++VE +R+ +T G P PV +F +
Sbjct: 1 PKFEKNFYQEHPDLARRTAQEVETYRRSKE------ITVRGH-------NCPKPVLNFYE 47
Query: 80 AFQHYP-EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHT 138
A ++P ++ + +FT P+ IQAQ WP+ +SG DM+G+AQTG+GKT ++LLPA++H
Sbjct: 48 A--NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHI 105
Query: 139 HLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGGKEIEPQLEKI 196
+ Q P ER GP LV+APTRELA Q+++ + LK+ C+YGG PQ+ +
Sbjct: 106 NHQ--PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDL 163
Query: 197 REGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQ 256
G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFEPQI K I P+RQ
Sbjct: 164 ERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 223
Query: 257 TVMTSATWNKDVQRVAKKYMVNPVKVNVGS 286
T+M SATW K+V+++A+ ++ + + +N+G+
Sbjct: 224 TLMWSATWPKEVRQLAEDFLKDYIHINIGA 253
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 206 bits (524), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 108/256 (42%), Positives = 163/256 (63%), Gaps = 20/256 (7%)
Query: 557 TPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYP-EILRQLENLS 615
T ++VE +R+ +T G P PV +F +A ++P ++ + +
Sbjct: 4 TAQEVETYRRSKE------ITVRGH-------NCPKPVLNFYEA--NFPANVMDVIARQN 48
Query: 616 FTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERA-GPSVL 674
FT P+ IQAQ WP+ +SG DM+G+AQTG+GKT ++LLPA++H + Q P ER GP L
Sbjct: 49 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ--PFLERGDGPICL 106
Query: 675 VMAPTRELATQIEREVNKIDYKG-LKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDF 733
V+APTRELA Q+++ + LK+ C+YGG PQ+ + G I IATPGRL DF
Sbjct: 107 VLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDF 166
Query: 734 VSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAK 793
+ +L+ +++VLDEADRMLD+GFEPQI K I P+RQT+M SATW K+V+++A+
Sbjct: 167 LECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAE 226
Query: 794 KYMVNPVKVNVGSLDL 809
++ + + +N+G+L+L
Sbjct: 227 DFLKDYIHINIGALEL 242
Score = 206 bits (524), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 108/256 (42%), Positives = 163/256 (63%), Gaps = 20/256 (7%)
Query: 37 TPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYP-EILRQLENLS 95
T ++VE +R+ +T G P PV +F +A ++P ++ + +
Sbjct: 4 TAQEVETYRRSKE------ITVRGH-------NCPKPVLNFYEA--NFPANVMDVIARQN 48
Query: 96 FTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERA-GPSVL 154
FT P+ IQAQ WP+ +SG DM+G+AQTG+GKT ++LLPA++H + Q P ER GP L
Sbjct: 49 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ--PFLERGDGPICL 106
Query: 155 VMAPTRELATQIEREVNKIDYKG-LKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDF 213
V+APTRELA Q+++ + LK+ C+YGG PQ+ + G I IATPGRL DF
Sbjct: 107 VLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDF 166
Query: 214 VSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAK 273
+ +L+ +++VLDEADRMLD+GFEPQI K I P+RQT+M SATW K+V+++A+
Sbjct: 167 LECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAE 226
Query: 274 KYMVNPVKVNVGSLDL 289
++ + + +N+G+L+L
Sbjct: 227 DFLKDYIHINIGALEL 242
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 204 bits (519), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/355 (32%), Positives = 198/355 (55%), Gaps = 22/355 (6%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSG-HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI 145
IL + N F P+ IQ + P+ ++ ++++ A+TG+GKT +F +P + +
Sbjct: 17 ILNAIRNKGFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI-------ELV 69
Query: 146 SERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILI 204
+E G +++ PTRELA Q+ E+ + K LK +YGGK I PQ++ ++ +I++
Sbjct: 70 NENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKN-ANIVV 128
Query: 205 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 264
TPGR+ D ++R +++LK V + +LDEAD L+ GF + K N +++ ++ SAT
Sbjct: 129 GTPGRILDHINRGTLNLKNVKYFILDEADEXLNXGFIKDVEKILNACNKDKRILLFSATX 188
Query: 265 NKDVQRVAKKYM--VNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEER 322
+++ +AKKY + +K + + + Q + ++E+E+ + L N +
Sbjct: 189 PREILNLAKKYXGDYSFIKAKINA-------NIEQSYVEVNENERFEALCRLLKNKEFYG 241
Query: 323 DKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVA 382
+VF K ++S L K+ +++GDLSQ RE + RI +ATDV
Sbjct: 242 ---LVFCKTKRDTKELASXLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVX 298
Query: 383 SRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEI 437
SRG+DV DL VINY P + E Y HR+GRTGRAGK G++I+++ R+++ I
Sbjct: 299 SRGIDVNDLNCVINYHLPQNPESYXHRIGRTGRAGKKGKAISIINRREYKKLRYI 353
Score = 183 bits (464), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 107/332 (32%), Positives = 182/332 (54%), Gaps = 22/332 (6%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSG-HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI 665
IL + N F P+ IQ + P+ ++ ++++ A+TG+GKT +F +P + +
Sbjct: 17 ILNAIRNKGFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI-------ELV 69
Query: 666 SERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILI 724
+E G +++ PTRELA Q+ E+ + K LK +YGGK + PQ++ ++ +I++
Sbjct: 70 NENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKN-ANIVV 128
Query: 725 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 784
TPGR+ D ++R +++LK V + +LDEAD L+ GF + K N +++ ++ SAT
Sbjct: 129 GTPGRILDHINRGTLNLKNVKYFILDEADEXLNXGFIKDVEKILNACNKDKRILLFSATX 188
Query: 785 NKDVQRVAKKYM--VNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEER 842
+++ +AKKY + +K + + + Q + ++E+E+ + L N +
Sbjct: 189 PREILNLAKKYXGDYSFIKAKINA-------NIEQSYVEVNENERFEALCRLLKNKEFYG 241
Query: 843 DKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVA 902
+VF K ++S L K+ +++GDLSQ RE + RI +ATDV
Sbjct: 242 ---LVFCKTKRDTKELASXLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVX 298
Query: 903 SRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
SRG+DV DL VINY P + E Y HR+GRTG
Sbjct: 299 SRGIDVNDLNCVINYHLPQNPESYXHRIGRTG 330
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 204 bits (518), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 114/346 (32%), Positives = 192/346 (55%), Gaps = 9/346 (2%)
Query: 86 EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI 145
++LR + F PS IQ +A ++ G D+I +Q+GTGKT F + L Q I
Sbjct: 26 DLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVL-----QCLDI 80
Query: 146 SERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKEIEPQLEKIREGCHILI 204
R L++APTRELA QI++ + + DY ++ GG + + K+ G H++
Sbjct: 81 QVRE-TQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVA 139
Query: 205 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 264
TPGR+ D + R S+ +A+ +VLDEAD ML+ GF+ QI Y+ P Q V+ SAT
Sbjct: 140 GTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATL 199
Query: 265 NKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDK 324
++ + K+M +P+++ V +L + + E+ K D L + +D + +
Sbjct: 200 PHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTIT--Q 257
Query: 325 VMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASR 384
++F K V ++ + S++GD+ Q++RE +++ SG +R+ ++TDV +R
Sbjct: 258 AVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWAR 317
Query: 385 GLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430
GLDVP ++ +INYD P++ E Y+HR+GR+GR G+ G +I + D
Sbjct: 318 GLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDD 363
Score = 194 bits (494), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 109/332 (32%), Positives = 185/332 (55%), Gaps = 9/332 (2%)
Query: 606 EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI 665
++LR + F PS IQ +A ++ G D+I +Q+GTGKT F + L Q I
Sbjct: 26 DLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVL-----QCLDI 80
Query: 666 SERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKELEPQLEKIREGCHILI 724
R L++APTRELA QI++ + + DY ++ GG + + K+ G H++
Sbjct: 81 QVRE-TQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVA 139
Query: 725 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 784
TPGR+ D + R S+ +A+ +VLDEAD ML+ GF+ QI Y+ P Q V+ SAT
Sbjct: 140 GTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATL 199
Query: 785 NKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDK 844
++ + K+M +P+++ V +L + + E+ K D L + +D + +
Sbjct: 200 PHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTIT--Q 257
Query: 845 VMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASR 904
++F K V ++ + S++GD+ Q++RE +++ SG +R+ ++TDV +R
Sbjct: 258 AVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWAR 317
Query: 905 GLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936
GLDVP ++ +INYD P++ E Y+HR+GR+G +
Sbjct: 318 GLDVPQVSLIINYDLPNNRELYIHRIGRSGRY 349
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 204 bits (518), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 115/347 (33%), Positives = 195/347 (56%), Gaps = 11/347 (3%)
Query: 86 EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI 145
++LR + F PS IQ +A ++ G D+I +Q+GTGKT F + L Q I
Sbjct: 48 DLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVL-----QCLDI 102
Query: 146 SERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKEIEPQLEKIREGCHILI 204
R L++APTRELA QI++ + + DY ++ GG + + K+ G H++
Sbjct: 103 QVRE-TQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVA 161
Query: 205 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 264
TPGR+ D + R S+ +A+ +VLDEAD ML+ GF+ QI Y+ P Q V+ SAT
Sbjct: 162 GTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATL 221
Query: 265 NKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDE-KKDWLMEFFDNMDEERD 323
++ + K+M +P+++ V +L + Q + ++ +E K D L + +D +
Sbjct: 222 PHEILEMTNKFMTDPIRILVKRDELTL-EGIKQFFVAVEREEWKFDTLCDLYDTLTIT-- 278
Query: 324 KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 383
+ ++F K V ++ + S++GD+ Q++RE +++ SG +R+ ++TDV +
Sbjct: 279 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA 338
Query: 384 RGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430
RGLDVP ++ +INYD P++ E Y+HR+GR+GR G+ G +I + D
Sbjct: 339 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDD 385
Score = 194 bits (494), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 110/333 (33%), Positives = 188/333 (56%), Gaps = 11/333 (3%)
Query: 606 EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI 665
++LR + F PS IQ +A ++ G D+I +Q+GTGKT F + L Q I
Sbjct: 48 DLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVL-----QCLDI 102
Query: 666 SERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKELEPQLEKIREGCHILI 724
R L++APTRELA QI++ + + DY ++ GG + + K+ G H++
Sbjct: 103 QVRE-TQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVA 161
Query: 725 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 784
TPGR+ D + R S+ +A+ +VLDEAD ML+ GF+ QI Y+ P Q V+ SAT
Sbjct: 162 GTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATL 221
Query: 785 NKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDE-KKDWLMEFFDNMDEERD 843
++ + K+M +P+++ V +L + Q + ++ +E K D L + +D +
Sbjct: 222 PHEILEMTNKFMTDPIRILVKRDELTL-EGIKQFFVAVEREEWKFDTLCDLYDTLTIT-- 278
Query: 844 KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 903
+ ++F K V ++ + S++GD+ Q++RE +++ SG +R+ ++TDV +
Sbjct: 279 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA 338
Query: 904 RGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936
RGLDVP ++ +INYD P++ E Y+HR+GR+G +
Sbjct: 339 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRY 371
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 204 bits (518), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 115/347 (33%), Positives = 195/347 (56%), Gaps = 11/347 (3%)
Query: 86 EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI 145
++LR + F PS IQ +A ++ G D+I +Q+GTGKT F + L Q I
Sbjct: 48 DLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVL-----QCLDI 102
Query: 146 SERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKEIEPQLEKIREGCHILI 204
R L++APTRELA QI++ + + DY ++ GG + + K+ G H++
Sbjct: 103 QVRE-TQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVA 161
Query: 205 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 264
TPGR+ D + R S+ +A+ +VLDEAD ML+ GF+ QI Y+ P Q V+ SAT
Sbjct: 162 GTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATL 221
Query: 265 NKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDE-KKDWLMEFFDNMDEERD 323
++ + K+M +P+++ V +L + Q + ++ +E K D L + +D +
Sbjct: 222 PHEILEMTNKFMTDPIRILVKRDELTL-EGIKQFFVAVEREEWKFDTLCDLYDTLTIT-- 278
Query: 324 KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 383
+ ++F K V ++ + S++GD+ Q++RE +++ SG +R+ ++TDV +
Sbjct: 279 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA 338
Query: 384 RGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430
RGLDVP ++ +INYD P++ E Y+HR+GR+GR G+ G +I + D
Sbjct: 339 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDD 385
Score = 194 bits (493), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 110/333 (33%), Positives = 188/333 (56%), Gaps = 11/333 (3%)
Query: 606 EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI 665
++LR + F PS IQ +A ++ G D+I +Q+GTGKT F + L Q I
Sbjct: 48 DLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVL-----QCLDI 102
Query: 666 SERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKELEPQLEKIREGCHILI 724
R L++APTRELA QI++ + + DY ++ GG + + K+ G H++
Sbjct: 103 QVRE-TQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVA 161
Query: 725 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 784
TPGR+ D + R S+ +A+ +VLDEAD ML+ GF+ QI Y+ P Q V+ SAT
Sbjct: 162 GTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATL 221
Query: 785 NKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDE-KKDWLMEFFDNMDEERD 843
++ + K+M +P+++ V +L + Q + ++ +E K D L + +D +
Sbjct: 222 PHEILEMTNKFMTDPIRILVKRDELTL-EGIKQFFVAVEREEWKFDTLCDLYDTLTIT-- 278
Query: 844 KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 903
+ ++F K V ++ + S++GD+ Q++RE +++ SG +R+ ++TDV +
Sbjct: 279 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA 338
Query: 904 RGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936
RGLDVP ++ +INYD P++ E Y+HR+GR+G +
Sbjct: 339 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRY 371
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 203 bits (517), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 115/347 (33%), Positives = 195/347 (56%), Gaps = 11/347 (3%)
Query: 86 EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI 145
++LR + F PS IQ +A ++ G D+I +Q+GTGKT F + L Q I
Sbjct: 47 DLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVL-----QCLDI 101
Query: 146 SERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKEIEPQLEKIREGCHILI 204
R L++APTRELA QI++ + + DY ++ GG + + K+ G H++
Sbjct: 102 QVRE-TQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVA 160
Query: 205 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 264
TPGR+ D + R S+ +A+ +VLDEAD ML+ GF+ QI Y+ P Q V+ SAT
Sbjct: 161 GTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATL 220
Query: 265 NKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDE-KKDWLMEFFDNMDEERD 323
++ + K+M +P+++ V +L + Q + ++ +E K D L + +D +
Sbjct: 221 PHEILEMTNKFMTDPIRILVKRDELTL-EGIKQFFVAVEREEWKFDTLCDLYDTLTIT-- 277
Query: 324 KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 383
+ ++F K V ++ + S++GD+ Q++RE +++ SG +R+ ++TDV +
Sbjct: 278 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA 337
Query: 384 RGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430
RGLDVP ++ +INYD P++ E Y+HR+GR+GR G+ G +I + D
Sbjct: 338 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDD 384
Score = 194 bits (493), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 110/333 (33%), Positives = 188/333 (56%), Gaps = 11/333 (3%)
Query: 606 EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI 665
++LR + F PS IQ +A ++ G D+I +Q+GTGKT F + L Q I
Sbjct: 47 DLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVL-----QCLDI 101
Query: 666 SERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKELEPQLEKIREGCHILI 724
R L++APTRELA QI++ + + DY ++ GG + + K+ G H++
Sbjct: 102 QVRE-TQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVA 160
Query: 725 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 784
TPGR+ D + R S+ +A+ +VLDEAD ML+ GF+ QI Y+ P Q V+ SAT
Sbjct: 161 GTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATL 220
Query: 785 NKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDE-KKDWLMEFFDNMDEERD 843
++ + K+M +P+++ V +L + Q + ++ +E K D L + +D +
Sbjct: 221 PHEILEMTNKFMTDPIRILVKRDELTL-EGIKQFFVAVEREEWKFDTLCDLYDTLTIT-- 277
Query: 844 KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 903
+ ++F K V ++ + S++GD+ Q++RE +++ SG +R+ ++TDV +
Sbjct: 278 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA 337
Query: 904 RGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936
RGLDVP ++ +INYD P++ E Y+HR+GR+G +
Sbjct: 338 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRY 370
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 203 bits (516), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 113/346 (32%), Positives = 193/346 (55%), Gaps = 9/346 (2%)
Query: 86 EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI 145
++LR + F PS IQ +A ++ G D+I +Q+GTGKT F + L Q I
Sbjct: 11 DLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVL-----QCLDI 65
Query: 146 SERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKEIEPQLEKIREGCHILI 204
R L++APTRELA Q+++ + + DY +++ GG + + K+ G H++
Sbjct: 66 QVRE-TQALILAPTRELAVQVQKGLLALGDYMNVQSHACIGGTNVGEDIRKLDYGQHVVA 124
Query: 205 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 264
TPGR+ D + R S+ +A+ +VLDEAD ML+ GF+ QI Y+ P Q V+ SAT
Sbjct: 125 GTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATL 184
Query: 265 NKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDK 324
+V + K+M +P+++ V +L + + E+ K D L + +D + +
Sbjct: 185 PHEVLEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTIT--Q 242
Query: 325 VMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASR 384
++F K V ++ + S++GD+ Q++RE +++ SG +R+ ++TDV +R
Sbjct: 243 AVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWAR 302
Query: 385 GLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430
GLDVP ++ +INYD P++ E Y+HR+GR+GR G+ G ++ + D
Sbjct: 303 GLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAVNFVKNDD 348
Score = 194 bits (493), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 109/332 (32%), Positives = 186/332 (56%), Gaps = 9/332 (2%)
Query: 606 EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI 665
++LR + F PS IQ +A ++ G D+I +Q+GTGKT F + L Q I
Sbjct: 11 DLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVL-----QCLDI 65
Query: 666 SERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKELEPQLEKIREGCHILI 724
R L++APTRELA Q+++ + + DY +++ GG + + K+ G H++
Sbjct: 66 QVRE-TQALILAPTRELAVQVQKGLLALGDYMNVQSHACIGGTNVGEDIRKLDYGQHVVA 124
Query: 725 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 784
TPGR+ D + R S+ +A+ +VLDEAD ML+ GF+ QI Y+ P Q V+ SAT
Sbjct: 125 GTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATL 184
Query: 785 NKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDK 844
+V + K+M +P+++ V +L + + E+ K D L + +D + +
Sbjct: 185 PHEVLEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTIT--Q 242
Query: 845 VMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASR 904
++F K V ++ + S++GD+ Q++RE +++ SG +R+ ++TDV +R
Sbjct: 243 AVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWAR 302
Query: 905 GLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936
GLDVP ++ +INYD P++ E Y+HR+GR+G +
Sbjct: 303 GLDVPQVSLIINYDLPNNRELYIHRIGRSGRY 334
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 202 bits (514), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 112/346 (32%), Positives = 192/346 (55%), Gaps = 9/346 (2%)
Query: 86 EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI 145
++LR + F PS IQ +A ++ G D+I +Q+GTGKT F + L Q I
Sbjct: 11 DLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVL-----QCLDI 65
Query: 146 SERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKEIEPQLEKIREGCHILI 204
R L++APTRELA Q+++ + + DY ++ GG + + K+ G H++
Sbjct: 66 QVRE-TQALILAPTRELAVQVQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVA 124
Query: 205 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 264
TPGR+ D + R S+ +A+ +VLDEAD ML+ GF+ QI Y+ P Q V+ SAT
Sbjct: 125 GTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATL 184
Query: 265 NKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDK 324
++ + K+M +P+++ V +L + + E+ K D L + +D + +
Sbjct: 185 PHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTIT--Q 242
Query: 325 VMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASR 384
++F K V ++ + S++GD+ Q++RE +++ SG +R+ ++TDV +R
Sbjct: 243 AVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWAR 302
Query: 385 GLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430
GLDVP ++ +INYD P++ E Y+HR+GR+GR G+ G ++ + D
Sbjct: 303 GLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAVNFVKNDD 348
Score = 193 bits (491), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 108/332 (32%), Positives = 185/332 (55%), Gaps = 9/332 (2%)
Query: 606 EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI 665
++LR + F PS IQ +A ++ G D+I +Q+GTGKT F + L Q I
Sbjct: 11 DLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVL-----QCLDI 65
Query: 666 SERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKELEPQLEKIREGCHILI 724
R L++APTRELA Q+++ + + DY ++ GG + + K+ G H++
Sbjct: 66 QVRE-TQALILAPTRELAVQVQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVA 124
Query: 725 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 784
TPGR+ D + R S+ +A+ +VLDEAD ML+ GF+ QI Y+ P Q V+ SAT
Sbjct: 125 GTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATL 184
Query: 785 NKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDK 844
++ + K+M +P+++ V +L + + E+ K D L + +D + +
Sbjct: 185 PHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTIT--Q 242
Query: 845 VMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASR 904
++F K V ++ + S++GD+ Q++RE +++ SG +R+ ++TDV +R
Sbjct: 243 AVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWAR 302
Query: 905 GLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936
GLDVP ++ +INYD P++ E Y+HR+GR+G +
Sbjct: 303 GLDVPQVSLIINYDLPNNRELYIHRIGRSGRY 334
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 184 bits (468), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 112/373 (30%), Positives = 191/373 (51%), Gaps = 34/373 (9%)
Query: 86 EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI 145
E+L + F PSPIQ +A P+ ++G D++ A+ GTGKT AF++P L
Sbjct: 31 ELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTL---------- 80
Query: 146 SERAGPSV-----LVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKEIEPQLEKIREG 199
E+ P + L+M PTRELA Q + V + + G+ + GG + + ++ E
Sbjct: 81 -EKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNET 139
Query: 200 CHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVM 259
HIL+ TPGR+ D SR DL S ++DEAD+ML F+ I + ++ P Q+++
Sbjct: 140 VHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLL 199
Query: 260 TSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMD 319
SAT+ V+ K++ P ++N+ ++ +TQ ++E +K L F +
Sbjct: 200 FSATFPLTVKEFMVKHLHKPYEINL--MEELTLKGITQYYAFVEERQKLHCLNTLFSKL- 256
Query: 320 EERDKVMVFMGRKASVSAMS---SDL--ACQYRKSCSLYGDLSQEDREIALEDITSGYAR 374
+ ++ ++F V ++ +DL +C Y + + Q++R + G R
Sbjct: 257 -QINQAIIFCNSTNRVELLAKKITDLGYSCYYS-----HARMKQQERNKVFHEFRQGKVR 310
Query: 375 ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHA 434
V +D+ +RG+D+ + VIN+DFP E Y+HR+GR+GR G G +I L+ +W+
Sbjct: 311 TLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLI---NWNDR 367
Query: 435 HEIIPILEEGGHE 447
+ I +E G E
Sbjct: 368 FNLYKIEQELGTE 380
Score = 176 bits (445), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 104/342 (30%), Positives = 176/342 (51%), Gaps = 31/342 (9%)
Query: 606 EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI 665
E+L + F PSPIQ +A P+ ++G D++ A+ GTGKT AF++P L
Sbjct: 31 ELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTL---------- 80
Query: 666 SERAGPSV-----LVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKELEPQLEKIREG 719
E+ P + L+M PTRELA Q + V + + G+ + GG L + ++ E
Sbjct: 81 -EKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNET 139
Query: 720 CHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVM 779
HIL+ TPGR+ D SR DL S ++DEAD+ML F+ I + ++ P Q+++
Sbjct: 140 VHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLL 199
Query: 780 TSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMD 839
SAT+ V+ K++ P ++N+ ++ +TQ ++E +K L F +
Sbjct: 200 FSATFPLTVKEFMVKHLHKPYEINL--MEELTLKGITQYYAFVEERQKLHCLNTLFSKL- 256
Query: 840 EERDKVMVFMGRKASVSAMS---SDL--ACQYRKSCSLYGDLSQEDREIALEDITSGYAR 894
+ ++ ++F V ++ +DL +C Y + + Q++R + G R
Sbjct: 257 -QINQAIIFCNSTNRVELLAKKITDLGYSCYYS-----HARMKQQERNKVFHEFRQGKVR 310
Query: 895 ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936
V +D+ +RG+D+ + VIN+DFP E Y+HR+GR+G F
Sbjct: 311 TLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRF 352
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 184 bits (466), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 116/346 (33%), Positives = 193/346 (55%), Gaps = 10/346 (2%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 146
+LR + F PS IQ +A + G+D+I AQ+GTGKT F + L L
Sbjct: 51 LLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL------ 104
Query: 147 ERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKEIEPQLEKIR-EGCHILI 204
+ LV+APTRELA QI++ V + DY G GG + +++K++ E HI++
Sbjct: 105 DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIV 164
Query: 205 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 264
TPGR+ D ++R + K + VLDEAD ML GF+ QI +N N Q V+ SAT
Sbjct: 165 GTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATM 224
Query: 265 NKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDK 324
DV V KK+M +P+++ V +L I + E+ K D L + ++ + +
Sbjct: 225 PSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETL--TITQ 282
Query: 325 VMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASR 384
++F+ + V ++ + + +++GD+ Q++R++ + + SG +R+ + TD+ +R
Sbjct: 283 AVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLAR 342
Query: 385 GLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430
G+DV ++ VINYD P++ E Y+HR+GR GR G+ G +I ++T +D
Sbjct: 343 GIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEED 388
Score = 182 bits (462), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 106/324 (32%), Positives = 177/324 (54%), Gaps = 10/324 (3%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 666
+LR + F PS IQ +A + G+D+I AQ+GTGKT F + L L
Sbjct: 51 LLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL------ 104
Query: 667 ERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKELEPQLEKIR-EGCHILI 724
+ LV+APTRELA QI++ V + DY G GG + +++K++ E HI++
Sbjct: 105 DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIV 164
Query: 725 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 784
TPGR+ D ++R + K + VLDEAD ML GF+ QI +N N Q V+ SAT
Sbjct: 165 GTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATM 224
Query: 785 NKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDK 844
DV V KK+M +P+++ V +L I + E+ K D L + ++ + +
Sbjct: 225 PSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETL--TITQ 282
Query: 845 VMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASR 904
++F+ + V ++ + + +++GD+ Q++R++ + + SG +R+ + TD+ +R
Sbjct: 283 AVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLAR 342
Query: 905 GLDVPDLTHVINYDFPSHIEEYVH 928
G+DV ++ VINYD P++ E Y+H
Sbjct: 343 GIDVQQVSLVINYDLPTNRENYIH 366
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 183 bits (465), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 116/346 (33%), Positives = 193/346 (55%), Gaps = 10/346 (2%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 146
+LR + F PS IQ +A + G+D+I AQ+GTGKT F + L L
Sbjct: 25 LLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL------ 78
Query: 147 ERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKEIEPQLEKIR-EGCHILI 204
+ LV+APTRELA QI++ V + DY G GG + +++K++ E HI++
Sbjct: 79 DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIV 138
Query: 205 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 264
TPGR+ D ++R + K + VLDEAD ML GF+ QI +N N Q V+ SAT
Sbjct: 139 GTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATM 198
Query: 265 NKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDK 324
DV V KK+M +P+++ V +L I + E+ K D L + ++ + +
Sbjct: 199 PSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETL--TITQ 256
Query: 325 VMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASR 384
++F+ + V ++ + + +++GD+ Q++R++ + + SG +R+ + TD+ +R
Sbjct: 257 AVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLAR 316
Query: 385 GLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430
G+DV ++ VINYD P++ E Y+HR+GR GR G+ G +I ++T +D
Sbjct: 317 GIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEED 362
Score = 182 bits (461), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 106/324 (32%), Positives = 177/324 (54%), Gaps = 10/324 (3%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 666
+LR + F PS IQ +A + G+D+I AQ+GTGKT F + L L
Sbjct: 25 LLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL------ 78
Query: 667 ERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKELEPQLEKIR-EGCHILI 724
+ LV+APTRELA QI++ V + DY G GG + +++K++ E HI++
Sbjct: 79 DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIV 138
Query: 725 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 784
TPGR+ D ++R + K + VLDEAD ML GF+ QI +N N Q V+ SAT
Sbjct: 139 GTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATM 198
Query: 785 NKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDK 844
DV V KK+M +P+++ V +L I + E+ K D L + ++ + +
Sbjct: 199 PSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETL--TITQ 256
Query: 845 VMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASR 904
++F+ + V ++ + + +++GD+ Q++R++ + + SG +R+ + TD+ +R
Sbjct: 257 AVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLAR 316
Query: 905 GLDVPDLTHVINYDFPSHIEEYVH 928
G+DV ++ VINYD P++ E Y+H
Sbjct: 317 GIDVQQVSLVINYDLPTNRENYIH 340
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 177 bits (450), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 117/352 (33%), Positives = 191/352 (54%), Gaps = 10/352 (2%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 146
+LR + F PS IQ +A ++ GHD++ AQ+GTGKT F + AL Q S
Sbjct: 33 LLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAAL-----QRIDTS 87
Query: 147 ERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEIEPQLEKIREGCHILIA 205
+A P L++APTRELA QI++ V + + +K GG E +R+ I++
Sbjct: 88 VKA-PQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDA-QIVVG 145
Query: 206 TPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWN 265
TPGR+ D + R + +LDEAD ML GF+ QI + + P Q V+ SAT
Sbjct: 146 TPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMP 205
Query: 266 KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKV 325
DV V K+M NPV++ V +L + + +E+ K + L + +D++ +
Sbjct: 206 NDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSIS--VTQA 263
Query: 326 MVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRG 385
++F + V +++ L ++Y DL Q++R+ +++ SG +RI ++TD+ +RG
Sbjct: 264 VIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARG 323
Query: 386 LDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEI 437
+DV ++ VINYD P++ E Y+HR+GR GR G+ G +I +T +D E+
Sbjct: 324 IDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMREL 375
Score = 174 bits (442), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 108/326 (33%), Positives = 177/326 (54%), Gaps = 10/326 (3%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 666
+LR + F PS IQ +A ++ GHD++ AQ+GTGKT F + AL Q S
Sbjct: 33 LLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAAL-----QRIDTS 87
Query: 667 ERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKELEPQLEKIREGCHILIA 725
+A P L++APTRELA QI++ V + + +K GG E +R+ I++
Sbjct: 88 VKA-PQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDA-QIVVG 145
Query: 726 TPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWN 785
TPGR+ D + R + +LDEAD ML GF+ QI + + P Q V+ SAT
Sbjct: 146 TPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMP 205
Query: 786 KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKV 845
DV V K+M NPV++ V +L + + +E+ K + L + +D++ +
Sbjct: 206 NDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSIS--VTQA 263
Query: 846 MVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRG 905
++F + V +++ L ++Y DL Q++R+ +++ SG +RI ++TD+ +RG
Sbjct: 264 VIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARG 323
Query: 906 LDVPDLTHVINYDFPSHIEEYVHRVG 931
+DV ++ VINYD P++ E Y+HR+G
Sbjct: 324 IDVQQVSLVINYDLPANKENYIHRIG 349
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 175 bits (443), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 95/242 (39%), Positives = 147/242 (60%), Gaps = 10/242 (4%)
Query: 66 PDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTG 125
PD+ N + +F + + P I + S+ P+PIQ A P ++ D++ AQTG+G
Sbjct: 14 PDYSATNVIENFDE-LKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSG 72
Query: 126 KTFAFLLPALIHT---HLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAV 181
KT AFL+P + H L S+ A P L++APTRELA QI E K L++
Sbjct: 73 KTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSC 132
Query: 182 CVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFE 241
VYGG + Q+ +++ GCH+L+ATPGRL DF+ + I L+ ++VLDEADRMLD+GFE
Sbjct: 133 VVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFE 192
Query: 242 PQINK----TSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQ 297
PQI K +++ NRQT+M SAT+ K++Q++A ++ N + + VG + + + ++ Q
Sbjct: 193 PQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVG-STSDSIKQ 251
Query: 298 KI 299
+I
Sbjct: 252 EI 253
Score = 175 bits (443), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 95/242 (39%), Positives = 147/242 (60%), Gaps = 10/242 (4%)
Query: 586 PDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTG 645
PD+ N + +F + + P I + S+ P+PIQ A P ++ D++ AQTG+G
Sbjct: 14 PDYSATNVIENFDE-LKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSG 72
Query: 646 KTFAFLLPALIHT---HLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAV 701
KT AFL+P + H L S+ A P L++APTRELA QI E K L++
Sbjct: 73 KTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSC 132
Query: 702 CVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFE 761
VYGG + Q+ +++ GCH+L+ATPGRL DF+ + I L+ ++VLDEADRMLD+GFE
Sbjct: 133 VVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFE 192
Query: 762 PQINK----TSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQ 817
PQI K +++ NRQT+M SAT+ K++Q++A ++ N + + VG + + + ++ Q
Sbjct: 193 PQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVG-STSDSIKQ 251
Query: 818 KI 819
+I
Sbjct: 252 EI 253
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 173 bits (439), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 110/361 (30%), Positives = 188/361 (52%), Gaps = 13/361 (3%)
Query: 71 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 130
P ++ F+ F PE+LR + + F PS +Q + P + G D++ A++G GKT F
Sbjct: 3 PGHMSGFRD-FLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVF 61
Query: 131 LLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID--YKGLKAVCVYGGKE 188
+L L Q P++ + SVLVM TRELA QI +E + +K +GG
Sbjct: 62 VLATL----QQLEPVTGQV--SVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLS 115
Query: 189 IEPQLEKIREGC-HILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLD-LGFEPQINK 246
I+ E +++ C HI++ TPGR+ S++LK + +LDEAD+ML+ L + +
Sbjct: 116 IKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDEADKMLEQLDMRRDVQE 175
Query: 247 TSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDE 306
+Q +M SAT +K+++ V +K+M +P+++ V H + Q + L ++E
Sbjct: 176 IFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE 235
Query: 307 KKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALE 366
K L + D + E ++V++F+ A++ L Q + +++ + QE+R +
Sbjct: 236 KNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQ 293
Query: 367 DITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLM 426
RI VAT++ RG+D+ + NYD P + Y+HRV R GR G G +IT +
Sbjct: 294 QFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFV 353
Query: 427 T 427
+
Sbjct: 354 S 354
Score = 164 bits (415), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 105/350 (30%), Positives = 181/350 (51%), Gaps = 13/350 (3%)
Query: 591 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 650
P ++ F+ F PE+LR + + F PS +Q + P + G D++ A++G GKT F
Sbjct: 3 PGHMSGFRD-FLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVF 61
Query: 651 LLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID--YKGLKAVCVYGGKE 708
+L L Q P++ + SVLVM TRELA QI +E + +K +GG
Sbjct: 62 VLATL----QQLEPVTGQV--SVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLS 115
Query: 709 LEPQLEKIREGC-HILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLD-LGFEPQINK 766
++ E +++ C HI++ TPGR+ S++LK + +LDEAD+ML+ L + +
Sbjct: 116 IKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDEADKMLEQLDMRRDVQE 175
Query: 767 TSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDE 826
+Q +M SAT +K+++ V +K+M +P+++ V H + Q + L ++E
Sbjct: 176 IFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE 235
Query: 827 KKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALE 886
K L + D + E ++V++F+ A++ L Q + +++ + QE+R +
Sbjct: 236 KNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQ 293
Query: 887 DITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936
RI VAT++ RG+D+ + NYD P + Y+HRV R G F
Sbjct: 294 QFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRF 343
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 172 bits (436), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 109/361 (30%), Positives = 187/361 (51%), Gaps = 12/361 (3%)
Query: 71 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 130
P ++S + F PE+LR + + F PS +Q + P + G D++ A++G GKT F
Sbjct: 3 PGHMSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVF 62
Query: 131 LLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID--YKGLKAVCVYGGKE 188
+L L Q P++ + SVLVM TRELA QI +E + +K +GG
Sbjct: 63 VLATL----QQLEPVTGQV--SVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLS 116
Query: 189 IEPQLEKIREGC-HILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLD-LGFEPQINK 246
I+ E +++ C HI++ TPGR+ S++LK + +LDE D+ML+ L + +
Sbjct: 117 IKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQE 176
Query: 247 TSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDE 306
+Q +M SAT +K+++ V +K+M +P+++ V H + Q + L ++E
Sbjct: 177 IFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE 236
Query: 307 KKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALE 366
K L + D + E ++V++F+ A++ L Q + +++ + QE+R +
Sbjct: 237 KNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQ 294
Query: 367 DITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLM 426
RI VAT++ RG+D+ + NYD P + Y+HRV R GR G G +IT +
Sbjct: 295 QFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFV 354
Query: 427 T 427
+
Sbjct: 355 S 355
Score = 163 bits (412), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 104/350 (29%), Positives = 180/350 (51%), Gaps = 12/350 (3%)
Query: 591 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 650
P ++S + F PE+LR + + F PS +Q + P + G D++ A++G GKT F
Sbjct: 3 PGHMSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVF 62
Query: 651 LLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID--YKGLKAVCVYGGKE 708
+L L Q P++ + SVLVM TRELA QI +E + +K +GG
Sbjct: 63 VLATL----QQLEPVTGQV--SVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLS 116
Query: 709 LEPQLEKIREGC-HILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLD-LGFEPQINK 766
++ E +++ C HI++ TPGR+ S++LK + +LDE D+ML+ L + +
Sbjct: 117 IKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQE 176
Query: 767 TSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDE 826
+Q +M SAT +K+++ V +K+M +P+++ V H + Q + L ++E
Sbjct: 177 IFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE 236
Query: 827 KKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALE 886
K L + D + E ++V++F+ A++ L Q + +++ + QE+R +
Sbjct: 237 KNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQ 294
Query: 887 DITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936
RI VAT++ RG+D+ + NYD P + Y+HRV R G F
Sbjct: 295 QFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRF 344
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 172 bits (435), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 109/361 (30%), Positives = 187/361 (51%), Gaps = 12/361 (3%)
Query: 71 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 130
P ++S + F PE+LR + + F PS +Q + P + G D++ A++G GKT F
Sbjct: 3 PGHMSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVF 62
Query: 131 LLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID--YKGLKAVCVYGGKE 188
+L L Q P++ + SVLVM TRELA QI +E + +K +GG
Sbjct: 63 VLATL----QQLEPVTGQV--SVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLS 116
Query: 189 IEPQLEKIREGC-HILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLD-LGFEPQINK 246
I+ E +++ C HI++ TPGR+ S++LK + +LDE D+ML+ L + +
Sbjct: 117 IKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQE 176
Query: 247 TSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDE 306
+Q +M SAT +K+++ V +K+M +P+++ V H + Q + L ++E
Sbjct: 177 IFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE 236
Query: 307 KKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALE 366
K L + D + E ++V++F+ A++ L Q + +++ + QE+R +
Sbjct: 237 KNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQ 294
Query: 367 DITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLM 426
RI VAT++ RG+D+ + NYD P + Y+HRV R GR G G +IT +
Sbjct: 295 QFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFV 354
Query: 427 T 427
+
Sbjct: 355 S 355
Score = 163 bits (412), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 104/350 (29%), Positives = 180/350 (51%), Gaps = 12/350 (3%)
Query: 591 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 650
P ++S + F PE+LR + + F PS +Q + P + G D++ A++G GKT F
Sbjct: 3 PGHMSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVF 62
Query: 651 LLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID--YKGLKAVCVYGGKE 708
+L L Q P++ + SVLVM TRELA QI +E + +K +GG
Sbjct: 63 VLATL----QQLEPVTGQV--SVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLS 116
Query: 709 LEPQLEKIREGC-HILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLD-LGFEPQINK 766
++ E +++ C HI++ TPGR+ S++LK + +LDE D+ML+ L + +
Sbjct: 117 IKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQE 176
Query: 767 TSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDE 826
+Q +M SAT +K+++ V +K+M +P+++ V H + Q + L ++E
Sbjct: 177 IFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE 236
Query: 827 KKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALE 886
K L + D + E ++V++F+ A++ L Q + +++ + QE+R +
Sbjct: 237 KNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQ 294
Query: 887 DITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936
RI VAT++ RG+D+ + NYD P + Y+HRV R G F
Sbjct: 295 QFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRF 344
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 171 bits (433), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/348 (31%), Positives = 182/348 (52%), Gaps = 28/348 (8%)
Query: 86 EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI 145
+I + + + F + +Q++ P+++ G +++ A+TG+GKT A+ +P L
Sbjct: 4 KIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPIL---------- 53
Query: 146 SERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILI 204
G LV+ PTREL Q+ + I Y K VYGG + Q+ ++R I++
Sbjct: 54 --ELGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVV 110
Query: 205 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 264
ATPGRL D S+ IDL + V++DEAD M ++GF I + + T + SAT
Sbjct: 111 ATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSATI 170
Query: 265 NKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDK 324
+++++V K ++ N ++ + LA V K + + K DW + + E +DK
Sbjct: 171 PEEIRKVVKDFITNYEEIE-ACIGLA---NVEHKFVHV----KDDWRSKV-QALRENKDK 221
Query: 325 -VMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 383
V+VF+ + V+ L + + L GDL Q R ++ G + + TDVAS
Sbjct: 222 GVIVFVRTRNRVAK----LVRLFDNAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVAS 277
Query: 384 RGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDW 431
RGLD+P + VIN+D P + Y+HR+GRTGR G+ GE+IT + + W
Sbjct: 278 RGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFILNEYW 325
Score = 154 bits (390), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/331 (31%), Positives = 171/331 (51%), Gaps = 28/331 (8%)
Query: 606 EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI 665
+I + + + F + +Q++ P+++ G +++ A+TG+GKT A+ +P L
Sbjct: 4 KIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPIL---------- 53
Query: 666 SERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILI 724
G LV+ PTREL Q+ + I Y K VYGG + Q+ ++R I++
Sbjct: 54 --ELGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVV 110
Query: 725 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 784
ATPGRL D S+ IDL + V++DEAD M ++GF I + + T + SAT
Sbjct: 111 ATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSATI 170
Query: 785 NKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDK 844
+++++V K ++ N ++ + LA V K + + K DW + + E +DK
Sbjct: 171 PEEIRKVVKDFITNYEEIE-ACIGLA---NVEHKFVHV----KDDWRSKV-QALRENKDK 221
Query: 845 -VMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 903
V+VF+ + V+ L + + L GDL Q R ++ G + + TDVAS
Sbjct: 222 GVIVFVRTRNRVAK----LVRLFDNAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVAS 277
Query: 904 RGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
RGLD+P + VIN+D P + Y+HR+GRTG
Sbjct: 278 RGLDIPLVEKVINFDAPQDLRTYIHRIGRTG 308
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 171 bits (433), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 115/352 (32%), Positives = 187/352 (53%), Gaps = 10/352 (2%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 146
+LR + F PS IQ +A ++ GHD++ AQ+GTGKT F + AL Q S
Sbjct: 32 LLRGVFGYGFEEPSAIQQRAIXPIIEGHDVLAQAQSGTGKTGTFSIAAL-----QRIDTS 86
Query: 147 ERAGPSVLVMAPTRELATQIEREVNKIDY-KGLKAVCVYGGKEIEPQLEKIREGCHILIA 205
+A P L +APTRELA QI++ V + + +K GG E +R+ I++
Sbjct: 87 VKA-PQALXLAPTRELALQIQKVVXALAFHXDIKVHACIGGTSFVEDAEGLRDA-QIVVG 144
Query: 206 TPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWN 265
TPGR+ D + R + +LDEAD L GF+ QI + + P Q V+ SAT
Sbjct: 145 TPGRVFDNIQRRRFRTDKIKXFILDEADEXLSSGFKEQIYQIFTLLPPTTQVVLLSATXP 204
Query: 266 KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKV 325
DV V K+ NPV++ V +L + + +E+ K + L + +D++ +
Sbjct: 205 NDVLEVTTKFXRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSIS--VTQA 262
Query: 326 MVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRG 385
++F + V +++ L ++Y DL Q++R+ ++ SG +RI ++TD+ +RG
Sbjct: 263 VIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIXKEFRSGSSRILISTDLLARG 322
Query: 386 LDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEI 437
+DV ++ VINYD P++ E Y+HR+GR GR G+ G +I +T +D E+
Sbjct: 323 IDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAXREL 374
Score = 168 bits (425), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/326 (32%), Positives = 173/326 (53%), Gaps = 10/326 (3%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 666
+LR + F PS IQ +A ++ GHD++ AQ+GTGKT F + AL Q S
Sbjct: 32 LLRGVFGYGFEEPSAIQQRAIXPIIEGHDVLAQAQSGTGKTGTFSIAAL-----QRIDTS 86
Query: 667 ERAGPSVLVMAPTRELATQIEREVNKIDY-KGLKAVCVYGGKELEPQLEKIREGCHILIA 725
+A P L +APTRELA QI++ V + + +K GG E +R+ I++
Sbjct: 87 VKA-PQALXLAPTRELALQIQKVVXALAFHXDIKVHACIGGTSFVEDAEGLRDA-QIVVG 144
Query: 726 TPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWN 785
TPGR+ D + R + +LDEAD L GF+ QI + + P Q V+ SAT
Sbjct: 145 TPGRVFDNIQRRRFRTDKIKXFILDEADEXLSSGFKEQIYQIFTLLPPTTQVVLLSATXP 204
Query: 786 KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKV 845
DV V K+ NPV++ V +L + + +E+ K + L + +D++ +
Sbjct: 205 NDVLEVTTKFXRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSIS--VTQA 262
Query: 846 MVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRG 905
++F + V +++ L ++Y DL Q++R+ ++ SG +RI ++TD+ +RG
Sbjct: 263 VIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIXKEFRSGSSRILISTDLLARG 322
Query: 906 LDVPDLTHVINYDFPSHIEEYVHRVG 931
+DV ++ VINYD P++ E Y+HR+G
Sbjct: 323 IDVQQVSLVINYDLPANKENYIHRIG 348
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 169 bits (428), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 121/378 (32%), Positives = 195/378 (51%), Gaps = 28/378 (7%)
Query: 86 EILRQLENLSFTTPSPIQAQAW-PILMS-GHDMIGIAQTGTGKTFAFLLPALIHTHLQTT 143
EI + + + F +P+Q + PIL S HD+I A+TGTGKTFAFL+P I HL T
Sbjct: 31 EIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIP--IFQHLINT 88
Query: 144 PISERAGPSVLVMAPTRELATQIEREVNKI---DYKGLKAVCV--YGGKEIEPQLEKIRE 198
+ +++APTR+LA QIE EV KI +Y K CV GG + + K+ +
Sbjct: 89 KFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNK 148
Query: 199 -GCHILIATPGRLNDFVSRASIDL-KAVSFVVLDEADRMLDLGFEPQINKTSIYINP--- 253
+I+IATPGRL D + + S + V + VLDEADR+L++GF + S +N
Sbjct: 149 LRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNS 208
Query: 254 ----NRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDL---AATHTVTQKIIILDEDE 306
N +T++ SAT + VQ++A M + + ++D A + Q ++I ++
Sbjct: 209 KSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFA 268
Query: 307 KKDWL-MEFFDNMDEERD---KVMVFMGRKASVSAMSSDLACQYRKSC---SLYGDLSQE 359
+ +E +ERD K ++F S + S L +++K +G ++Q
Sbjct: 269 NSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQN 328
Query: 360 DREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKS 419
R ++ + I V TDV +RG+D P++ V+ PS + Y+HR+GRT R+GK
Sbjct: 329 KRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKE 388
Query: 420 GESITLMTRKDWSHAHEI 437
G S+ + + + E+
Sbjct: 389 GSSVLFICKDELPFVREL 406
Score = 154 bits (390), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 115/355 (32%), Positives = 183/355 (51%), Gaps = 28/355 (7%)
Query: 606 EILRQLENLSFTTPSPIQAQAW-PILMS-GHDMIGIAQTGTGKTFAFLLPALIHTHLQTT 663
EI + + + F +P+Q + PIL S HD+I A+TGTGKTFAFL+P I HL T
Sbjct: 31 EIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIP--IFQHLINT 88
Query: 664 PISERAGPSVLVMAPTRELATQIEREVNKI---DYKGLKAVCV--YGGKELEPQLEKIRE 718
+ +++APTR+LA QIE EV KI +Y K CV GG + + K+ +
Sbjct: 89 KFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNK 148
Query: 719 -GCHILIATPGRLNDFVSRASIDL-KAVSFVVLDEADRMLDLGFEPQINKTSIYINP--- 773
+I+IATPGRL D + + S + V + VLDEADR+L++GF + S +N
Sbjct: 149 LRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNS 208
Query: 774 ----NRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDL---AATHTVTQKIIILDEDE 826
N +T++ SAT + VQ++A M + + ++D A + Q ++I ++
Sbjct: 209 KSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFA 268
Query: 827 KKDWL-MEFFDNMDEERD---KVMVFMGRKASVSAMSSDLACQYRKSC---SLYGDLSQE 879
+ +E +ERD K ++F S + S L +++K +G ++Q
Sbjct: 269 NSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQN 328
Query: 880 DREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
R ++ + I V TDV +RG+D P++ V+ PS + Y+HR+GRT
Sbjct: 329 KRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTA 383
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 169 bits (428), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 121/378 (32%), Positives = 195/378 (51%), Gaps = 28/378 (7%)
Query: 86 EILRQLENLSFTTPSPIQAQAW-PILMS-GHDMIGIAQTGTGKTFAFLLPALIHTHLQTT 143
EI + + + F +P+Q + PIL S HD+I A+TGTGKTFAFL+P I HL T
Sbjct: 82 EIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIP--IFQHLINT 139
Query: 144 PISERAGPSVLVMAPTRELATQIEREVNKI---DYKGLKAVCV--YGGKEIEPQLEKIRE 198
+ +++APTR+LA QIE EV KI +Y K CV GG + + K+ +
Sbjct: 140 KFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNK 199
Query: 199 -GCHILIATPGRLNDFVSRASIDL-KAVSFVVLDEADRMLDLGFEPQINKTSIYINP--- 253
+I+IATPGRL D + + S + V + VLDEADR+L++GF + S +N
Sbjct: 200 LRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNS 259
Query: 254 ----NRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDL---AATHTVTQKIIILDEDE 306
N +T++ SAT + VQ++A M + + ++D A + Q ++I ++
Sbjct: 260 KSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFA 319
Query: 307 KKDWL-MEFFDNMDEERD---KVMVFMGRKASVSAMSSDLACQYRKSC---SLYGDLSQE 359
+ +E +ERD K ++F S + S L +++K +G ++Q
Sbjct: 320 NSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQN 379
Query: 360 DREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKS 419
R ++ + I V TDV +RG+D P++ V+ PS + Y+HR+GRT R+GK
Sbjct: 380 KRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKE 439
Query: 420 GESITLMTRKDWSHAHEI 437
G S+ + + + E+
Sbjct: 440 GSSVLFICKDELPFVREL 457
Score = 154 bits (390), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 115/355 (32%), Positives = 183/355 (51%), Gaps = 28/355 (7%)
Query: 606 EILRQLENLSFTTPSPIQAQAW-PILMS-GHDMIGIAQTGTGKTFAFLLPALIHTHLQTT 663
EI + + + F +P+Q + PIL S HD+I A+TGTGKTFAFL+P I HL T
Sbjct: 82 EIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIP--IFQHLINT 139
Query: 664 PISERAGPSVLVMAPTRELATQIEREVNKI---DYKGLKAVCV--YGGKELEPQLEKIRE 718
+ +++APTR+LA QIE EV KI +Y K CV GG + + K+ +
Sbjct: 140 KFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNK 199
Query: 719 -GCHILIATPGRLNDFVSRASIDL-KAVSFVVLDEADRMLDLGFEPQINKTSIYINP--- 773
+I+IATPGRL D + + S + V + VLDEADR+L++GF + S +N
Sbjct: 200 LRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNS 259
Query: 774 ----NRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDL---AATHTVTQKIIILDEDE 826
N +T++ SAT + VQ++A M + + ++D A + Q ++I ++
Sbjct: 260 KSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFA 319
Query: 827 KKDWL-MEFFDNMDEERD---KVMVFMGRKASVSAMSSDLACQYRKSC---SLYGDLSQE 879
+ +E +ERD K ++F S + S L +++K +G ++Q
Sbjct: 320 NSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQN 379
Query: 880 DREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
R ++ + I V TDV +RG+D P++ V+ PS + Y+HR+GRT
Sbjct: 380 KRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTA 434
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 169 bits (427), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 121/378 (32%), Positives = 195/378 (51%), Gaps = 28/378 (7%)
Query: 86 EILRQLENLSFTTPSPIQAQAW-PILMS-GHDMIGIAQTGTGKTFAFLLPALIHTHLQTT 143
EI + + + F +P+Q + PIL S HD+I A+TGTGKTFAFL+P I HL T
Sbjct: 31 EIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIP--IFQHLINT 88
Query: 144 PISERAGPSVLVMAPTRELATQIEREVNKI---DYKGLKAVCV--YGGKEIEPQLEKIRE 198
+ +++APTR+LA QIE EV KI +Y K CV GG + + K+ +
Sbjct: 89 KFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNK 148
Query: 199 -GCHILIATPGRLNDFVSRASIDL-KAVSFVVLDEADRMLDLGFEPQINKTSIYINP--- 253
+I+IATPGRL D + + S + V + VLDEADR+L++GF + S +N
Sbjct: 149 LRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNS 208
Query: 254 ----NRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDL---AATHTVTQKIIILDEDE 306
N +T++ SAT + VQ++A M + + ++D A + Q ++I ++
Sbjct: 209 KSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFA 268
Query: 307 KKDWL-MEFFDNMDEERD---KVMVFMGRKASVSAMSSDLACQYRKSC---SLYGDLSQE 359
+ +E +ERD K ++F S + S L +++K +G ++Q
Sbjct: 269 NSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQN 328
Query: 360 DREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKS 419
R ++ + I V TDV +RG+D P++ V+ PS + Y+HR+GRT R+GK
Sbjct: 329 KRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKE 388
Query: 420 GESITLMTRKDWSHAHEI 437
G S+ + + + E+
Sbjct: 389 GSSVLFICKDELPFVREL 406
Score = 154 bits (390), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 115/355 (32%), Positives = 183/355 (51%), Gaps = 28/355 (7%)
Query: 606 EILRQLENLSFTTPSPIQAQAW-PILMS-GHDMIGIAQTGTGKTFAFLLPALIHTHLQTT 663
EI + + + F +P+Q + PIL S HD+I A+TGTGKTFAFL+P I HL T
Sbjct: 31 EIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIP--IFQHLINT 88
Query: 664 PISERAGPSVLVMAPTRELATQIEREVNKI---DYKGLKAVCV--YGGKELEPQLEKIRE 718
+ +++APTR+LA QIE EV KI +Y K CV GG + + K+ +
Sbjct: 89 KFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNK 148
Query: 719 -GCHILIATPGRLNDFVSRASIDL-KAVSFVVLDEADRMLDLGFEPQINKTSIYINP--- 773
+I+IATPGRL D + + S + V + VLDEADR+L++GF + S +N
Sbjct: 149 LRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNS 208
Query: 774 ----NRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDL---AATHTVTQKIIILDEDE 826
N +T++ SAT + VQ++A M + + ++D A + Q ++I ++
Sbjct: 209 KSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFA 268
Query: 827 KKDWL-MEFFDNMDEERD---KVMVFMGRKASVSAMSSDLACQYRKSC---SLYGDLSQE 879
+ +E +ERD K ++F S + S L +++K +G ++Q
Sbjct: 269 NSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQN 328
Query: 880 DREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
R ++ + I V TDV +RG+D P++ V+ PS + Y+HR+GRT
Sbjct: 329 KRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTA 383
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 107/359 (29%), Positives = 182/359 (50%), Gaps = 28/359 (7%)
Query: 85 PEILRQLENLSFTTPSPIQAQAWPILMSG--HDMIGIAQTGTGKTFAFLLPALIHTHLQT 142
PE+L+ + + F PS IQ +A P+L+ +MI +Q+GTGKT AF L L +
Sbjct: 14 PELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVN--- 70
Query: 143 TPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIRE-GCH 201
E A P + +AP+RELA Q V ++ K + + EK ++
Sbjct: 71 ---PEDASPQAICLAPSRELARQTLEVVQEMG----KFTKITSQLIVPDSFEKNKQINAQ 123
Query: 202 ILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDL-GFEPQINKTSIYINPNRQTVMT 260
+++ TPG + D + R + L+ + VLDEAD MLD G Q + ++ + Q V+
Sbjct: 124 VIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLF 183
Query: 261 SATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD---EDEKKDWLMEFFDN 317
SAT+ V++ AKK + N N L + K + +D E +K D L E +
Sbjct: 184 SATFADAVRQYAKKIVPN---ANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGV 240
Query: 318 MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICV 377
M ++F+ K + + + L + + L+GDL ++R+ ++D G +++ +
Sbjct: 241 M--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLI 298
Query: 378 ATDVASRGLDVPDLTHVINYDFPSHIE------EYVHRVGRTGRAGKSGESITLMTRKD 430
T+V +RG+D+P ++ V+NYD P+ Y+HR+GRTGR G+ G +I+ + K+
Sbjct: 299 TTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 357
Score = 150 bits (378), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 103/345 (29%), Positives = 173/345 (50%), Gaps = 28/345 (8%)
Query: 605 PEILRQLENLSFTTPSPIQAQAWPILMSG--HDMIGIAQTGTGKTFAFLLPALIHTHLQT 662
PE+L+ + + F PS IQ +A P+L+ +MI +Q+GTGKT AF L L +
Sbjct: 14 PELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVN--- 70
Query: 663 TPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIRE-GCH 721
E A P + +AP+RELA Q V ++ K + + EK ++
Sbjct: 71 ---PEDASPQAICLAPSRELARQTLEVVQEMG----KFTKITSQLIVPDSFEKNKQINAQ 123
Query: 722 ILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDL-GFEPQINKTSIYINPNRQTVMT 780
+++ TPG + D + R + L+ + VLDEAD MLD G Q + ++ + Q V+
Sbjct: 124 VIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLF 183
Query: 781 SATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD---EDEKKDWLMEFFDN 837
SAT+ V++ AKK + N N L + K + +D E +K D L E +
Sbjct: 184 SATFADAVRQYAKKIVPN---ANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGV 240
Query: 838 MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICV 897
M ++F+ K + + + L + + L+GDL ++R+ ++D G +++ +
Sbjct: 241 M--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLI 298
Query: 898 ATDVASRGLDVPDLTHVINYDFPSHIE------EYVHRVGRTGEF 936
T+V +RG+D+P ++ V+NYD P+ Y+HR+GRTG F
Sbjct: 299 TTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRF 343
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 158 bits (399), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 107/359 (29%), Positives = 182/359 (50%), Gaps = 28/359 (7%)
Query: 85 PEILRQLENLSFTTPSPIQAQAWPILMSG--HDMIGIAQTGTGKTFAFLLPALIHTHLQT 142
PE+L+ + + F PS IQ +A P+L+ +MI +Q+GTGKT AF L L +
Sbjct: 14 PELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVN--- 70
Query: 143 TPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIRE-GCH 201
E A P + +AP+RELA Q V ++ K + + EK ++
Sbjct: 71 ---PEDASPQAICLAPSRELARQTLEVVQEMG----KFTKITSQLIVPDSFEKNKQINAQ 123
Query: 202 ILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDL-GFEPQINKTSIYINPNRQTVMT 260
+++ TPG + D + R + L+ + VLDEAD MLD G Q + ++ + Q V+
Sbjct: 124 VIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLF 183
Query: 261 SATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD---EDEKKDWLMEFFDN 317
SAT+ V++ AKK + N N L + K + +D E +K D L E +
Sbjct: 184 SATFADAVRQYAKKIVPN---ANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGL 240
Query: 318 MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICV 377
M ++F+ K + + + L + + L+GDL ++R+ ++D G +++ +
Sbjct: 241 M--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLI 298
Query: 378 ATDVASRGLDVPDLTHVINYDFPSHIE------EYVHRVGRTGRAGKSGESITLMTRKD 430
T+V +RG+D+P ++ V+NYD P+ Y+HR+GRTGR G+ G +I+ + K+
Sbjct: 299 TTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 357
Score = 150 bits (378), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 103/345 (29%), Positives = 173/345 (50%), Gaps = 28/345 (8%)
Query: 605 PEILRQLENLSFTTPSPIQAQAWPILMSG--HDMIGIAQTGTGKTFAFLLPALIHTHLQT 662
PE+L+ + + F PS IQ +A P+L+ +MI +Q+GTGKT AF L L +
Sbjct: 14 PELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVN--- 70
Query: 663 TPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIRE-GCH 721
E A P + +AP+RELA Q V ++ K + + EK ++
Sbjct: 71 ---PEDASPQAICLAPSRELARQTLEVVQEMG----KFTKITSQLIVPDSFEKNKQINAQ 123
Query: 722 ILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDL-GFEPQINKTSIYINPNRQTVMT 780
+++ TPG + D + R + L+ + VLDEAD MLD G Q + ++ + Q V+
Sbjct: 124 VIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLF 183
Query: 781 SATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD---EDEKKDWLMEFFDN 837
SAT+ V++ AKK + N N L + K + +D E +K D L E +
Sbjct: 184 SATFADAVRQYAKKIVPN---ANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGL 240
Query: 838 MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICV 897
M ++F+ K + + + L + + L+GDL ++R+ ++D G +++ +
Sbjct: 241 M--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLI 298
Query: 898 ATDVASRGLDVPDLTHVINYDFPSHIE------EYVHRVGRTGEF 936
T+V +RG+D+P ++ V+NYD P+ Y+HR+GRTG F
Sbjct: 299 TTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRF 343
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 157 bits (396), Expect = 3e-38, Method: Composition-based stats.
Identities = 92/205 (44%), Positives = 119/205 (58%), Gaps = 6/205 (2%)
Query: 601 FQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHL 660
F PEIL L TTP+PIQA A P+ + G D+IG A+TGTGKT AF LP I L
Sbjct: 6 FPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALP--IAERL 63
Query: 661 QTTPISERA-GPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREG 719
P ER P LV+ PTRELA Q+ E+ + LK V VYGG Q E + G
Sbjct: 64 --APSQERGRKPRALVLTPTRELALQVASELTAVA-PHLKVVAVYGGTGYGKQKEALLRG 120
Query: 720 CHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVM 779
++ATPGR D++ + +DL V VLDEAD ML +GFE ++ P+RQT++
Sbjct: 121 ADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLL 180
Query: 780 TSATWNKDVQRVAKKYMVNPVKVNV 804
SAT +R+A++YM NPV +NV
Sbjct: 181 FSATLPSWAKRLAERYMKNPVLINV 205
Score = 157 bits (396), Expect = 3e-38, Method: Composition-based stats.
Identities = 92/205 (44%), Positives = 119/205 (58%), Gaps = 6/205 (2%)
Query: 81 FQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHL 140
F PEIL L TTP+PIQA A P+ + G D+IG A+TGTGKT AF LP I L
Sbjct: 6 FPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALP--IAERL 63
Query: 141 QTTPISERA-GPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREG 199
P ER P LV+ PTRELA Q+ E+ + LK V VYGG Q E + G
Sbjct: 64 --APSQERGRKPRALVLTPTRELALQVASELTAVA-PHLKVVAVYGGTGYGKQKEALLRG 120
Query: 200 CHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVM 259
++ATPGR D++ + +DL V VLDEAD ML +GFE ++ P+RQT++
Sbjct: 121 ADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLL 180
Query: 260 TSATWNKDVQRVAKKYMVNPVKVNV 284
SAT +R+A++YM NPV +NV
Sbjct: 181 FSATLPSWAKRLAERYMKNPVLINV 205
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 155 bits (393), Expect = 8e-38, Method: Composition-based stats.
Identities = 91/205 (44%), Positives = 119/205 (58%), Gaps = 6/205 (2%)
Query: 601 FQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHL 660
F PEIL L TTP+PI+A A P+ + G D+IG A+TGTGKT AF LP I L
Sbjct: 6 FPLKPEILEALHGRGLTTPTPIEAAALPLALEGKDLIGQARTGTGKTLAFALP--IAERL 63
Query: 661 QTTPISERA-GPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREG 719
P ER P LV+ PTRELA Q+ E+ + LK V VYGG Q E + G
Sbjct: 64 --APSQERGRKPRALVLTPTRELALQVASELTAVA-PHLKVVAVYGGTGYGKQKEALLRG 120
Query: 720 CHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVM 779
++ATPGR D++ + +DL V VLDEAD ML +GFE ++ P+RQT++
Sbjct: 121 ADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLL 180
Query: 780 TSATWNKDVQRVAKKYMVNPVKVNV 804
SAT +R+A++YM NPV +NV
Sbjct: 181 FSATLPSWAKRLAERYMKNPVLINV 205
Score = 155 bits (392), Expect = 9e-38, Method: Composition-based stats.
Identities = 91/205 (44%), Positives = 119/205 (58%), Gaps = 6/205 (2%)
Query: 81 FQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHL 140
F PEIL L TTP+PI+A A P+ + G D+IG A+TGTGKT AF LP I L
Sbjct: 6 FPLKPEILEALHGRGLTTPTPIEAAALPLALEGKDLIGQARTGTGKTLAFALP--IAERL 63
Query: 141 QTTPISERA-GPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREG 199
P ER P LV+ PTRELA Q+ E+ + LK V VYGG Q E + G
Sbjct: 64 --APSQERGRKPRALVLTPTRELALQVASELTAVA-PHLKVVAVYGGTGYGKQKEALLRG 120
Query: 200 CHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVM 259
++ATPGR D++ + +DL V VLDEAD ML +GFE ++ P+RQT++
Sbjct: 121 ADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLL 180
Query: 260 TSATWNKDVQRVAKKYMVNPVKVNV 284
SAT +R+A++YM NPV +NV
Sbjct: 181 FSATLPSWAKRLAERYMKNPVLINV 205
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 115/395 (29%), Positives = 201/395 (50%), Gaps = 29/395 (7%)
Query: 74 VTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSG--HDMIGIAQTGTGKTFAFL 131
V SF++ + P++L+ + + F PS IQ A P++++ ++I +Q+GTGKT AF+
Sbjct: 40 VKSFEE-LRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 98
Query: 132 LPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID--YKGLKAVCVYGGKEI 189
L L Q P ++ P L ++PT ELA Q + + ++ Y LK G ++
Sbjct: 99 LAMLS----QVEPANKY--PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKL 152
Query: 190 EPQLEKIREGCHILIATPGRLNDFVSRAS-IDLKAVSFVVLDEADRMLDL-GFEPQINKT 247
E + +KI E I+I TPG + D+ S+ ID K + VLDEAD M+ G + Q +
Sbjct: 153 E-RGQKISE--QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRI 209
Query: 248 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEK 307
+ N Q ++ SAT+ V + A+K + +P + + + ++ DEK
Sbjct: 210 QRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEK 269
Query: 308 KDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALED 367
L + + + M+F + + S ++++L+ + + L G++ E R +E
Sbjct: 270 FQALCNLYGAITIA--QAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIER 327
Query: 368 ITSGYARICVATDVASRGLDVPDLTHVINYDFPSHI------EEYVHRVGRTGRAGKSGE 421
G ++ V T+V +RG+DV ++ VIN+D P E Y+HR+GRTGR GK G
Sbjct: 328 FREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGL 387
Query: 422 SITLMTRKDWSHAHEIIPILEEGGHESYMIWRRDS 456
++ ++ D H+ I+ ++E H + I R D+
Sbjct: 388 AVNMV---DSKHSMNILNRIQE--HFNKKIERLDT 417
Score = 135 bits (340), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 105/355 (29%), Positives = 180/355 (50%), Gaps = 24/355 (6%)
Query: 594 VTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSG--HDMIGIAQTGTGKTFAFL 651
V SF++ + P++L+ + + F PS IQ A P++++ ++I +Q+GTGKT AF+
Sbjct: 40 VKSFEE-LRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 98
Query: 652 LPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID--YKGLKAVCVYGGKEL 709
L L Q P ++ P L ++PT ELA Q + + ++ Y LK G +L
Sbjct: 99 LAMLS----QVEPANKY--PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKL 152
Query: 710 EPQLEKIREGCHILIATPGRLNDFVSRAS-IDLKAVSFVVLDEADRMLDL-GFEPQINKT 767
E + +KI E I+I TPG + D+ S+ ID K + VLDEAD M+ G + Q +
Sbjct: 153 E-RGQKISE--QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRI 209
Query: 768 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEK 827
+ N Q ++ SAT+ V + A+K + +P + + + ++ DEK
Sbjct: 210 QRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEK 269
Query: 828 KDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALED 887
L + + + M+F + + S ++++L+ + + L G++ E R +E
Sbjct: 270 FQALCNLYGAITIA--QAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIER 327
Query: 888 ITSGYARICVATDVASRGLDVPDLTHVINYDFPSHI------EEYVHRVGRTGEF 936
G ++ V T+V +RG+DV ++ VIN+D P E Y+HR+GRTG F
Sbjct: 328 FREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRF 382
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/346 (29%), Positives = 173/346 (50%), Gaps = 21/346 (6%)
Query: 102 IQAQAWPILMSG--HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPT 159
IQ +A P+L+S +MIG +Q+GTGKT AF L L P + +AP+
Sbjct: 145 IQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPK------PQAICLAPS 198
Query: 160 RELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASI 219
RELA QI V ++ K + +G K+ P+ KI I+I TPG + D + R +
Sbjct: 199 RELARQIMDVVTEMG-KYTEVKTAFGIKDSVPKGAKI--DAQIVIGTPGTVMDLMKRRQL 255
Query: 220 DLKAVSFVVLDEADRMLDL-GFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVN 278
D + + VLDEAD MLD G Q + + N Q V+ SAT+++ V++ A+++ N
Sbjct: 256 DARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPN 315
Query: 279 PVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAM 338
++ + + +L+ + E+ K + L+E + + + ++F +K + +
Sbjct: 316 ANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLL--TIGQSIIFCKKKDTAEEI 373
Query: 339 SSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYD 398
+ + L G+L R+ ++ G +++ V T+V +RG+DV + V+NYD
Sbjct: 374 ARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYD 433
Query: 399 FP------SHIEEYVHRVGRTGRAGKSGESITLM-TRKDWSHAHEI 437
P + Y+HR+GRTGR G+ G SI + +K W + I
Sbjct: 434 MPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAI 479
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/324 (29%), Positives = 162/324 (50%), Gaps = 20/324 (6%)
Query: 622 IQAQAWPILMSG--HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPT 679
IQ +A P+L+S +MIG +Q+GTGKT AF L L P + +AP+
Sbjct: 145 IQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPK------PQAICLAPS 198
Query: 680 RELATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASI 739
RELA QI V ++ K + +G K+ P+ KI I+I TPG + D + R +
Sbjct: 199 RELARQIMDVVTEMG-KYTEVKTAFGIKDSVPKGAKI--DAQIVIGTPGTVMDLMKRRQL 255
Query: 740 DLKAVSFVVLDEADRMLDL-GFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVN 798
D + + VLDEAD MLD G Q + + N Q V+ SAT+++ V++ A+++ N
Sbjct: 256 DARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPN 315
Query: 799 PVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAM 858
++ + + +L+ + E+ K + L+E + + + ++F +K + +
Sbjct: 316 ANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLL--TIGQSIIFCKKKDTAEEI 373
Query: 859 SSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYD 918
+ + L G+L R+ ++ G +++ V T+V +RG+DV + V+NYD
Sbjct: 374 ARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYD 433
Query: 919 FP------SHIEEYVHRVGRTGEF 936
P + Y+HR+GRTG F
Sbjct: 434 MPLDQAGRPDPQTYLHRIGRTGRF 457
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 120/400 (30%), Positives = 206/400 (51%), Gaps = 39/400 (9%)
Query: 74 VTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSG--HDMIGIAQTGTGKTFAFL 131
V SF++ + P++L+ + + F PS IQ A P++++ ++I +Q+GTGKT AF+
Sbjct: 91 VKSFEE-LRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 149
Query: 132 LPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID--YKGLKAVCVYGGKEI 189
L L Q P ++ P L ++PT ELA Q + + ++ Y LK G ++
Sbjct: 150 LAMLS----QVEPANKY--PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKL 203
Query: 190 EPQLEKIREGCHILIATPGRLNDFVSRAS-IDLKAVSFVVLDEADRMLDL-GFEPQINKT 247
E + +KI E I+I TPG + D+ S+ ID K + VLDEAD M+ G + Q +
Sbjct: 204 E-RGQKISE--QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRI 260
Query: 248 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNP----VKVNVGSLDLAATHTVTQKIIILD 303
+ N Q ++ SAT+ V + A+K + +P +K +LD T+ Q ++
Sbjct: 261 QRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLD-----TIKQYYVLCS 315
Query: 304 -EDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDRE 362
DEK L + + + M+F + + S ++++L+ + + L G++ E R
Sbjct: 316 SRDEKFQALCNLYGAITIA--QAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRA 373
Query: 363 IALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHI------EEYVHRVGRTGRA 416
+E G ++ V T+V +RG+DV ++ VIN+D P E Y+HR+GRTGR
Sbjct: 374 AVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRF 433
Query: 417 GKSGESITLMTRKDWSHAHEIIPILEEGGHESYMIWRRDS 456
GK G ++ ++ D H+ I+ ++E H + I R D+
Sbjct: 434 GKRGLAVNMV---DSKHSMNILNRIQE--HFNKKIERLDT 468
Score = 135 bits (340), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 110/360 (30%), Positives = 185/360 (51%), Gaps = 34/360 (9%)
Query: 594 VTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSG--HDMIGIAQTGTGKTFAFL 651
V SF++ + P++L+ + + F PS IQ A P++++ ++I +Q+GTGKT AF+
Sbjct: 91 VKSFEE-LRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 149
Query: 652 LPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID--YKGLKAVCVYGGKEL 709
L L Q P ++ P L ++PT ELA Q + + ++ Y LK G +L
Sbjct: 150 LAMLS----QVEPANKY--PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKL 203
Query: 710 EPQLEKIREGCHILIATPGRLNDFVSRAS-IDLKAVSFVVLDEADRMLDL-GFEPQINKT 767
E + +KI E I+I TPG + D+ S+ ID K + VLDEAD M+ G + Q +
Sbjct: 204 E-RGQKISE--QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRI 260
Query: 768 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNP----VKVNVGSLDLAATHTVTQKIIILD 823
+ N Q ++ SAT+ V + A+K + +P +K +LD T+ Q ++
Sbjct: 261 QRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLD-----TIKQYYVLCS 315
Query: 824 -EDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDRE 882
DEK L + + + M+F + + S ++++L+ + + L G++ E R
Sbjct: 316 SRDEKFQALCNLYGAITIA--QAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRA 373
Query: 883 IALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHI------EEYVHRVGRTGEF 936
+E G ++ V T+V +RG+DV ++ VIN+D P E Y+HR+GRTG F
Sbjct: 374 AVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRF 433
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 115/395 (29%), Positives = 201/395 (50%), Gaps = 29/395 (7%)
Query: 74 VTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSG--HDMIGIAQTGTGKTFAFL 131
V SF++ + P++L+ + + F PS IQ A P++++ ++I +Q+GTGKT AF+
Sbjct: 24 VKSFEE-LRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 82
Query: 132 LPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID--YKGLKAVCVYGGKEI 189
L L Q P ++ P L ++PT ELA Q + + ++ Y LK G ++
Sbjct: 83 LAMLS----QVEPANKY--PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKL 136
Query: 190 EPQLEKIREGCHILIATPGRLNDFVSRAS-IDLKAVSFVVLDEADRMLDL-GFEPQINKT 247
E + +KI E I+I TPG + D+ S+ ID K + VLDEAD M+ G + Q +
Sbjct: 137 E-RGQKISE--QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRI 193
Query: 248 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEK 307
+ N Q ++ SAT+ V + A+K + +P + + + ++ DEK
Sbjct: 194 QRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEK 253
Query: 308 KDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALED 367
L + + + M+F + + S ++++L+ + + L G++ E R +E
Sbjct: 254 FQALCNLYGAITIA--QAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIER 311
Query: 368 ITSGYARICVATDVASRGLDVPDLTHVINYDFP------SHIEEYVHRVGRTGRAGKSGE 421
G ++ V T+V +RG+DV ++ VIN+D P E Y+HR+GRTGR GK G
Sbjct: 312 FREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGL 371
Query: 422 SITLMTRKDWSHAHEIIPILEEGGHESYMIWRRDS 456
++ ++ D H+ I+ ++E H + I R D+
Sbjct: 372 AVNMV---DSKHSMNILNRIQE--HFNKKIERLDT 401
Score = 135 bits (340), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 105/355 (29%), Positives = 180/355 (50%), Gaps = 24/355 (6%)
Query: 594 VTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSG--HDMIGIAQTGTGKTFAFL 651
V SF++ + P++L+ + + F PS IQ A P++++ ++I +Q+GTGKT AF+
Sbjct: 24 VKSFEE-LRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 82
Query: 652 LPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID--YKGLKAVCVYGGKEL 709
L L Q P ++ P L ++PT ELA Q + + ++ Y LK G +L
Sbjct: 83 LAMLS----QVEPANKY--PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKL 136
Query: 710 EPQLEKIREGCHILIATPGRLNDFVSRAS-IDLKAVSFVVLDEADRMLDL-GFEPQINKT 767
E + +KI E I+I TPG + D+ S+ ID K + VLDEAD M+ G + Q +
Sbjct: 137 E-RGQKISE--QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRI 193
Query: 768 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEK 827
+ N Q ++ SAT+ V + A+K + +P + + + ++ DEK
Sbjct: 194 QRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEK 253
Query: 828 KDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALED 887
L + + + M+F + + S ++++L+ + + L G++ E R +E
Sbjct: 254 FQALCNLYGAITIA--QAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIER 311
Query: 888 ITSGYARICVATDVASRGLDVPDLTHVINYDFP------SHIEEYVHRVGRTGEF 936
G ++ V T+V +RG+DV ++ VIN+D P E Y+HR+GRTG F
Sbjct: 312 FREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRF 366
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 115/395 (29%), Positives = 201/395 (50%), Gaps = 29/395 (7%)
Query: 74 VTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSG--HDMIGIAQTGTGKTFAFL 131
V SF++ + P++L+ + + F PS IQ A P++++ ++I +Q+GTGKT AF+
Sbjct: 61 VKSFEE-LRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 119
Query: 132 LPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID--YKGLKAVCVYGGKEI 189
L L Q P ++ P L ++PT ELA Q + + ++ Y LK G ++
Sbjct: 120 LAMLS----QVEPANKY--PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKL 173
Query: 190 EPQLEKIREGCHILIATPGRLNDFVSRAS-IDLKAVSFVVLDEADRMLDL-GFEPQINKT 247
E + +KI E I+I TPG + D+ S+ ID K + VLDEAD M+ G + Q +
Sbjct: 174 E-RGQKISE--QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRI 230
Query: 248 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEK 307
+ N Q ++ SAT+ V + A+K + +P + + + ++ DEK
Sbjct: 231 QRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEK 290
Query: 308 KDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALED 367
L + + + M+F + + S ++++L+ + + L G++ E R +E
Sbjct: 291 FQALCNLYGAITIA--QAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIER 348
Query: 368 ITSGYARICVATDVASRGLDVPDLTHVINYDFPSHI------EEYVHRVGRTGRAGKSGE 421
G ++ V T+V +RG+DV ++ VIN+D P E Y+HR+GRTGR GK G
Sbjct: 349 FREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGL 408
Query: 422 SITLMTRKDWSHAHEIIPILEEGGHESYMIWRRDS 456
++ ++ D H+ I+ ++E H + I R D+
Sbjct: 409 AVNMV---DSKHSMNILNRIQE--HFNKKIERLDT 438
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 105/355 (29%), Positives = 180/355 (50%), Gaps = 24/355 (6%)
Query: 594 VTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSG--HDMIGIAQTGTGKTFAFL 651
V SF++ + P++L+ + + F PS IQ A P++++ ++I +Q+GTGKT AF+
Sbjct: 61 VKSFEE-LRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 119
Query: 652 LPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID--YKGLKAVCVYGGKEL 709
L L Q P ++ P L ++PT ELA Q + + ++ Y LK G +L
Sbjct: 120 LAMLS----QVEPANKY--PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKL 173
Query: 710 EPQLEKIREGCHILIATPGRLNDFVSRAS-IDLKAVSFVVLDEADRMLDL-GFEPQINKT 767
E + +KI E I+I TPG + D+ S+ ID K + VLDEAD M+ G + Q +
Sbjct: 174 E-RGQKISE--QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRI 230
Query: 768 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEK 827
+ N Q ++ SAT+ V + A+K + +P + + + ++ DEK
Sbjct: 231 QRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEK 290
Query: 828 KDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALED 887
L + + + M+F + + S ++++L+ + + L G++ E R +E
Sbjct: 291 FQALCNLYGAITIA--QAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIER 348
Query: 888 ITSGYARICVATDVASRGLDVPDLTHVINYDFPSHI------EEYVHRVGRTGEF 936
G ++ V T+V +RG+DV ++ VIN+D P E Y+HR+GRTG F
Sbjct: 349 FREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRF 403
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 118/197 (59%), Gaps = 8/197 (4%)
Query: 92 ENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGP 151
+ L +T P+ IQ +A P+ + G D+IG+A+TG+GKT AF LP L L TP A
Sbjct: 59 DQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL--NALLETPQRLFA-- 114
Query: 152 SVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEIEPQLEKIREGCHILIATPGRL 210
LV+ PTRELA QI + + G+++ + GG + Q + + HI+IATPGRL
Sbjct: 115 --LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRL 172
Query: 211 NDFVSRA-SIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQ 269
D + +L+A+ ++V+DEADR+L++ FE +++K I +R+T + SAT K VQ
Sbjct: 173 IDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQ 232
Query: 270 RVAKKYMVNPVKVNVGS 286
++ + + NPVK V S
Sbjct: 233 KLQRAALKNPVKCAVSS 249
Score = 130 bits (327), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 118/197 (59%), Gaps = 8/197 (4%)
Query: 612 ENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGP 671
+ L +T P+ IQ +A P+ + G D+IG+A+TG+GKT AF LP L L TP A
Sbjct: 59 DQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL--NALLETPQRLFA-- 114
Query: 672 SVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKELEPQLEKIREGCHILIATPGRL 730
LV+ PTRELA QI + + G+++ + GG + Q + + HI+IATPGRL
Sbjct: 115 --LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRL 172
Query: 731 NDFVSRA-SIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQ 789
D + +L+A+ ++V+DEADR+L++ FE +++K I +R+T + SAT K VQ
Sbjct: 173 IDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQ 232
Query: 790 RVAKKYMVNPVKVNVGS 806
++ + + NPVK V S
Sbjct: 233 KLQRAALKNPVKCAVSS 249
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain
pdb|1Q0U|B Chain B, Crystal Structure Of The Bstdead N-Terminal Domain
Length = 219
Score = 123 bits (309), Expect = 4e-28, Method: Composition-based stats.
Identities = 76/209 (36%), Positives = 113/209 (54%), Gaps = 11/209 (5%)
Query: 601 FQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHL 660
F P I+ ++ L F P+ IQ + P + G +G +QTGTGKT A+LLP +
Sbjct: 9 FPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESXVGQSQTGTGKTHAYLLP------I 62
Query: 661 QTTPISERAGPSVLVMAPTRELATQIEREVNKIDY-----KGLKAVCVYGGKELEPQLEK 715
ERA ++ APTRELATQI E KI + + A C+ GG + + LEK
Sbjct: 63 XEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRXIVARCLIGGTDKQKALEK 122
Query: 716 IREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNR 775
+ HI+I TPGR+NDF+ ++D+ +V+DEAD LD GF +++ + +
Sbjct: 123 LNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLXLDXGFITDVDQIAARXPKDL 182
Query: 776 QTVMTSATWNKDVQRVAKKYMVNPVKVNV 804
Q ++ SAT + ++ KKY NP V+V
Sbjct: 183 QXLVFSATIPEKLKPFLKKYXENPTFVHV 211
Score = 123 bits (309), Expect = 4e-28, Method: Composition-based stats.
Identities = 76/209 (36%), Positives = 113/209 (54%), Gaps = 11/209 (5%)
Query: 81 FQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHL 140
F P I+ ++ L F P+ IQ + P + G +G +QTGTGKT A+LLP +
Sbjct: 9 FPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESXVGQSQTGTGKTHAYLLP------I 62
Query: 141 QTTPISERAGPSVLVMAPTRELATQIEREVNKIDY-----KGLKAVCVYGGKEIEPQLEK 195
ERA ++ APTRELATQI E KI + + A C+ GG + + LEK
Sbjct: 63 XEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRXIVARCLIGGTDKQKALEK 122
Query: 196 IREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNR 255
+ HI+I TPGR+NDF+ ++D+ +V+DEAD LD GF +++ + +
Sbjct: 123 LNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLXLDXGFITDVDQIAARXPKDL 182
Query: 256 QTVMTSATWNKDVQRVAKKYMVNPVKVNV 284
Q ++ SAT + ++ KKY NP V+V
Sbjct: 183 QXLVFSATIPEKLKPFLKKYXENPTFVHV 211
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 122 bits (306), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 111/200 (55%), Gaps = 8/200 (4%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 146
+LR + F PS IQ +A + G+D+I AQ+GTGKT F + L +
Sbjct: 41 LLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEI------ 94
Query: 147 ERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKEIEPQLEKIR-EGCHILI 204
E LV+APTRELA QI++ + + DY G GG + +++K++ E HI++
Sbjct: 95 EFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVV 154
Query: 205 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 264
TPGR+ D ++R + K + VLDEAD ML GF+ QI + +N + Q V+ SAT
Sbjct: 155 GTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATM 214
Query: 265 NKDVQRVAKKYMVNPVKVNV 284
DV V KK+M +P+++ V
Sbjct: 215 PTDVLEVTKKFMRDPIRILV 234
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 111/200 (55%), Gaps = 8/200 (4%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 666
+LR + F PS IQ +A + G+D+I AQ+GTGKT F + L +
Sbjct: 41 LLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEI------ 94
Query: 667 ERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKELEPQLEKIR-EGCHILI 724
E LV+APTRELA QI++ + + DY G GG + +++K++ E HI++
Sbjct: 95 EFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVV 154
Query: 725 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 784
TPGR+ D ++R + K + VLDEAD ML GF+ QI + +N + Q V+ SAT
Sbjct: 155 GTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATM 214
Query: 785 NKDVQRVAKKYMVNPVKVNV 804
DV V KK+M +P+++ V
Sbjct: 215 PTDVLEVTKKFMRDPIRILV 234
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 119 bits (299), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 107/200 (53%), Gaps = 8/200 (4%)
Query: 606 EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI 665
++LR + F PS IQ +A ++ GHD++ AQ+GTGKT F + AL Q
Sbjct: 31 QLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAAL-----QRIDT 85
Query: 666 SERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKELEPQLEKIREGCHILI 724
S +A P L++APTRELA QI++ V + + +K GG E +R+ I++
Sbjct: 86 SVKA-PQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVV 143
Query: 725 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 784
TPGR+ D + R + +LDEAD ML GF+ QI + + P Q V+ SAT
Sbjct: 144 GTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATM 203
Query: 785 NKDVQRVAKKYMVNPVKVNV 804
DV V K+M NPV++ V
Sbjct: 204 PNDVLEVTTKFMRNPVRILV 223
Score = 119 bits (298), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 107/200 (53%), Gaps = 8/200 (4%)
Query: 86 EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI 145
++LR + F PS IQ +A ++ GHD++ AQ+GTGKT F + AL Q
Sbjct: 31 QLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAAL-----QRIDT 85
Query: 146 SERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEIEPQLEKIREGCHILI 204
S +A P L++APTRELA QI++ V + + +K GG E +R+ I++
Sbjct: 86 SVKA-PQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVV 143
Query: 205 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 264
TPGR+ D + R + +LDEAD ML GF+ QI + + P Q V+ SAT
Sbjct: 144 GTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATM 203
Query: 265 NKDVQRVAKKYMVNPVKVNV 284
DV V K+M NPV++ V
Sbjct: 204 PNDVLEVTTKFMRNPVRILV 223
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 119 bits (298), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 106/199 (53%), Gaps = 8/199 (4%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 666
+LR + F PS IQ +A ++ GHD++ AQ+GTGKT F + AL Q S
Sbjct: 25 LLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAAL-----QRIDTS 79
Query: 667 ERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKELEPQLEKIREGCHILIA 725
+A P L++APTRELA QI++ V + + +K GG E +R+ I++
Sbjct: 80 VKA-PQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVG 137
Query: 726 TPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWN 785
TPGR+ D + R + +LDEAD ML GF+ QI + + P Q V+ SAT
Sbjct: 138 TPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMP 197
Query: 786 KDVQRVAKKYMVNPVKVNV 804
DV V K+M NPV++ V
Sbjct: 198 NDVLEVTTKFMRNPVRILV 216
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 106/199 (53%), Gaps = 8/199 (4%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 146
+LR + F PS IQ +A ++ GHD++ AQ+GTGKT F + AL Q S
Sbjct: 25 LLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAAL-----QRIDTS 79
Query: 147 ERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEIEPQLEKIREGCHILIA 205
+A P L++APTRELA QI++ V + + +K GG E +R+ I++
Sbjct: 80 VKA-PQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVG 137
Query: 206 TPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWN 265
TPGR+ D + R + +LDEAD ML GF+ QI + + P Q V+ SAT
Sbjct: 138 TPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMP 197
Query: 266 KDVQRVAKKYMVNPVKVNV 284
DV V K+M NPV++ V
Sbjct: 198 NDVLEVTTKFMRNPVRILV 216
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
pdb|2G9N|B Chain B, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
Length = 221
Score = 113 bits (282), Expect = 6e-25, Method: Composition-based stats.
Identities = 71/200 (35%), Positives = 103/200 (51%), Gaps = 8/200 (4%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 146
+LR + F PS IQ +A + G+D+I AQ+GTG T F + L L
Sbjct: 26 LLRGIYAYGFEXPSAIQQRAILPCIXGYDVIAQAQSGTGXTATFAISILQQIEL------ 79
Query: 147 ERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKEIEPQLEKIR-EGCHILI 204
+ LV+APTRELA QI+ V + DY G GG + +++ ++ E HI++
Sbjct: 80 DLXATQALVLAPTRELAQQIQXVVMALGDYMGASCHACIGGTNVRAEVQXLQMEAPHIIV 139
Query: 205 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 264
TPGR+ D ++R + + VLDEAD ML GF QI +N N Q V+ SAT
Sbjct: 140 GTPGRVFDMLNRRYLSPXYIXMFVLDEADEMLSRGFXDQIYDIFQXLNSNTQVVLLSATM 199
Query: 265 NKDVQRVAKKYMVNPVKVNV 284
DV V +M +P+++ V
Sbjct: 200 PSDVLEVTXXFMRDPIRILV 219
Score = 112 bits (280), Expect = 9e-25, Method: Composition-based stats.
Identities = 71/200 (35%), Positives = 103/200 (51%), Gaps = 8/200 (4%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 666
+LR + F PS IQ +A + G+D+I AQ+GTG T F + L L
Sbjct: 26 LLRGIYAYGFEXPSAIQQRAILPCIXGYDVIAQAQSGTGXTATFAISILQQIEL------ 79
Query: 667 ERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKELEPQLEKIR-EGCHILI 724
+ LV+APTRELA QI+ V + DY G GG + +++ ++ E HI++
Sbjct: 80 DLXATQALVLAPTRELAQQIQXVVMALGDYMGASCHACIGGTNVRAEVQXLQMEAPHIIV 139
Query: 725 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 784
TPGR+ D ++R + + VLDEAD ML GF QI +N N Q V+ SAT
Sbjct: 140 GTPGRVFDMLNRRYLSPXYIXMFVLDEADEMLSRGFXDQIYDIFQXLNSNTQVVLLSATM 199
Query: 785 NKDVQRVAKKYMVNPVKVNV 804
DV V +M +P+++ V
Sbjct: 200 PSDVLEVTXXFMRDPIRILV 219
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 113 bits (282), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 110/201 (54%), Gaps = 10/201 (4%)
Query: 606 EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI 665
E+L + + + PSPIQ ++ PI +SG D++ A+ GTGK+ A+L+P L L+ I
Sbjct: 13 ELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNI 72
Query: 666 SERAGPSVLVMAPTRELATQIER---EVNKIDYKGLKAVCVYGGKELEPQLEKIREGCHI 722
+V+ PTRELA Q+ + +V+K G K + GG L + ++ + H+
Sbjct: 73 Q------AMVIVPTRELALQVSQICIQVSK-HMGGAKVMATTGGTNLRDDIMRLDDTVHV 125
Query: 723 LIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSA 782
+IATPGR+ D + + + V +VLDEAD++L F + + + NRQ ++ SA
Sbjct: 126 VIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSA 185
Query: 783 TWNKDVQRVAKKYMVNPVKVN 803
T+ VQ+ ++ P ++N
Sbjct: 186 TFPLSVQKFMNSHLEKPYEIN 206
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 110/201 (54%), Gaps = 10/201 (4%)
Query: 86 EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI 145
E+L + + + PSPIQ ++ PI +SG D++ A+ GTGK+ A+L+P L L+ I
Sbjct: 13 ELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNI 72
Query: 146 SERAGPSVLVMAPTRELATQIER---EVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCHI 202
+V+ PTRELA Q+ + +V+K G K + GG + + ++ + H+
Sbjct: 73 Q------AMVIVPTRELALQVSQICIQVSK-HMGGAKVMATTGGTNLRDDIMRLDDTVHV 125
Query: 203 LIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSA 262
+IATPGR+ D + + + V +VLDEAD++L F + + + NRQ ++ SA
Sbjct: 126 VIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSA 185
Query: 263 TWNKDVQRVAKKYMVNPVKVN 283
T+ VQ+ ++ P ++N
Sbjct: 186 TFPLSVQKFMNSHLEKPYEIN 206
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex
With Adp
Length = 236
Score = 113 bits (282), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 78/214 (36%), Positives = 119/214 (55%), Gaps = 14/214 (6%)
Query: 592 NPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFL 651
N +T F F + L+ L+ + + IQ Q + + G D++G A+TG+GKT AFL
Sbjct: 22 NEITRFSD-FPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80
Query: 652 LPALIHTH-LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEL 709
+P L + LQ T G VL+++PTRELA Q + K+ A + GGK+L
Sbjct: 81 VPVLEALYRLQWTSTD---GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDL 137
Query: 710 EPQLEKIREGCHILIATPGRL----NDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQIN 765
+ + E+I +IL+ TPGRL ++ VS + DL+ +VLDEADR+LD+GF +N
Sbjct: 138 KHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQ---MLVLDEADRILDMGFADTMN 193
Query: 766 KTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNP 799
+ RQT++ SAT K V+ +A+ + NP
Sbjct: 194 AVIENLPKKRQTLLFSATQTKSVKDLARLSLKNP 227
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 119/214 (55%), Gaps = 14/214 (6%)
Query: 72 NPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFL 131
N +T F F + L+ L+ + + IQ Q + + G D++G A+TG+GKT AFL
Sbjct: 22 NEITRFSD-FPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80
Query: 132 LPALIHTH-LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEI 189
+P L + LQ T G VL+++PTRELA Q + K+ A + GGK++
Sbjct: 81 VPVLEALYRLQWTSTD---GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDL 137
Query: 190 EPQLEKIREGCHILIATPGRL----NDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQIN 245
+ + E+I +IL+ TPGRL ++ VS + DL+ +VLDEADR+LD+GF +N
Sbjct: 138 KHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQ---MLVLDEADRILDMGFADTMN 193
Query: 246 KTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNP 279
+ RQT++ SAT K V+ +A+ + NP
Sbjct: 194 AVIENLPKKRQTLLFSATQTKSVKDLARLSLKNP 227
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain
pdb|2JGN|B Chain B, Ddx3 Helicase Domain
pdb|2JGN|C Chain C, Ddx3 Helicase Domain
Length = 185
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 93/158 (58%), Gaps = 1/158 (0%)
Query: 290 AATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKS 349
+ + +TQK++ ++E +K+ +L++ N + +VF+ K ++ L +
Sbjct: 15 STSENITQKVVWVEESDKRSFLLDLL-NATGKDSLTLVFVETKKGADSLEDFLYHEGYAC 73
Query: 350 CSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHR 409
S++GD SQ DRE AL SG + I VAT VA+RGLD+ ++ HVIN+D PS IEEYVHR
Sbjct: 74 TSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHR 133
Query: 410 VGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEGGHE 447
+GRTGR G G + + ++ + +++ +L E E
Sbjct: 134 IGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQE 171
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 78/125 (62%), Gaps = 1/125 (0%)
Query: 810 AATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKS 869
+ + +TQK++ ++E +K+ +L++ N + +VF+ K ++ L +
Sbjct: 15 STSENITQKVVWVEESDKRSFLLDLL-NATGKDSLTLVFVETKKGADSLEDFLYHEGYAC 73
Query: 870 CSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHR 929
S++GD SQ DRE AL SG + I VAT VA+RGLD+ ++ HVIN+D PS IEEYVHR
Sbjct: 74 TSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHR 133
Query: 930 VGRTG 934
+GRTG
Sbjct: 134 IGRTG 138
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56
pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Uap56
Length = 220
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 112/204 (54%), Gaps = 10/204 (4%)
Query: 85 PEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTP 144
PE+LR + + F PS +Q + P + G D++ A++G GKT F+L L Q P
Sbjct: 23 PELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL----QQLEP 78
Query: 145 ISERAGPSVLVMAPTRELATQIEREVNKID--YKGLKAVCVYGGKEIEPQLEKIREGC-H 201
++ + SVLVM TRELA QI +E + +K +GG I+ E +++ C H
Sbjct: 79 VTGQV--SVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPH 136
Query: 202 ILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLD-LGFEPQINKTSIYINPNRQTVMT 260
I++ TPGR+ S++LK + +LDE D+ML+ L + + +Q +M
Sbjct: 137 IVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMF 196
Query: 261 SATWNKDVQRVAKKYMVNPVKVNV 284
SAT +K+++ V +K+M +P+++ V
Sbjct: 197 SATLSKEIRPVCRKFMQDPMEIFV 220
Score = 109 bits (273), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 112/204 (54%), Gaps = 10/204 (4%)
Query: 605 PEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTP 664
PE+LR + + F PS +Q + P + G D++ A++G GKT F+L L Q P
Sbjct: 23 PELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL----QQLEP 78
Query: 665 ISERAGPSVLVMAPTRELATQIEREVNKID--YKGLKAVCVYGGKELEPQLEKIREGC-H 721
++ + SVLVM TRELA QI +E + +K +GG ++ E +++ C H
Sbjct: 79 VTGQV--SVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPH 136
Query: 722 ILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLD-LGFEPQINKTSIYINPNRQTVMT 780
I++ TPGR+ S++LK + +LDE D+ML+ L + + +Q +M
Sbjct: 137 IVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMF 196
Query: 781 SATWNKDVQRVAKKYMVNPVKVNV 804
SAT +K+++ V +K+M +P+++ V
Sbjct: 197 SATLSKEIRPVCRKFMQDPMEIFV 220
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 110 bits (274), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 111/193 (57%), Gaps = 14/193 (7%)
Query: 608 LRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPAL-IHTHLQTTPIS 666
L+ ++ + FT + IQ ++ L+ G D++ A+TG+GKT AFL+PA+ + L+ P
Sbjct: 66 LKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMP-- 123
Query: 667 ERAGPSVLVMAPTRELATQI-----EREVNKIDYKGLKAVCVYGGKELEPQLEKIREGCH 721
R G VL+++PTRELA Q E + + GL + GG + +K+ G +
Sbjct: 124 -RNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGL----IMGGSNRSAEAQKLGNGIN 178
Query: 722 ILIATPGRLNDFVSRA-SIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMT 780
I++ATPGRL D + K + +V+DEADR+LD+GFE ++ + + RQT++
Sbjct: 179 IIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLF 238
Query: 781 SATWNKDVQRVAK 793
SAT + V+ +A+
Sbjct: 239 SATQTRKVEDLAR 251
Score = 110 bits (274), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 111/193 (57%), Gaps = 14/193 (7%)
Query: 88 LRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPAL-IHTHLQTTPIS 146
L+ ++ + FT + IQ ++ L+ G D++ A+TG+GKT AFL+PA+ + L+ P
Sbjct: 66 LKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMP-- 123
Query: 147 ERAGPSVLVMAPTRELATQI-----EREVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCH 201
R G VL+++PTRELA Q E + + GL + GG + +K+ G +
Sbjct: 124 -RNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGL----IMGGSNRSAEAQKLGNGIN 178
Query: 202 ILIATPGRLNDFVSRA-SIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMT 260
I++ATPGRL D + K + +V+DEADR+LD+GFE ++ + + RQT++
Sbjct: 179 IIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLF 238
Query: 261 SATWNKDVQRVAK 273
SAT + V+ +A+
Sbjct: 239 SATQTRKVEDLAR 251
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 130/233 (55%), Gaps = 26/233 (11%)
Query: 590 IPNPVTSFKQAFQHYPEILRQLENL---SFTTPSPIQAQAWPILMSGHDMIGIAQTGTGK 646
+P+P+ +F+Q Q Y R L+N+ F P+PIQ QA P+++ G +++ A TG+GK
Sbjct: 20 LPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGK 79
Query: 647 TFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVY- 704
T AF +P L+ P ++ G L+++PTRELA+QI RE+ KI + G + ++
Sbjct: 80 TLAFSIPILMQL---KQPANK--GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHK 134
Query: 705 ---GGKELEPQLEKIREGCHILIATPGRLNDFVSR--ASIDLKAVSFVVLDEADRMLD-- 757
K+ P+ K + IL+ TP RL + + IDL +V ++V+DE+D++ +
Sbjct: 135 AAVAAKKFGPKSSKKFD---ILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDG 191
Query: 758 -LGFEPQINKTSIYINPNRQTV---MTSATWNKDVQRVAKKYMVNPVKVNVGS 806
GF Q+ SI++ V M SAT+ DV++ K + N + V++G+
Sbjct: 192 KTGFRDQL--ASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGA 242
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 130/233 (55%), Gaps = 26/233 (11%)
Query: 70 IPNPVTSFKQAFQHYPEILRQLENL---SFTTPSPIQAQAWPILMSGHDMIGIAQTGTGK 126
+P+P+ +F+Q Q Y R L+N+ F P+PIQ QA P+++ G +++ A TG+GK
Sbjct: 20 LPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGK 79
Query: 127 TFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVY- 184
T AF +P L+ P ++ G L+++PTRELA+QI RE+ KI + G + ++
Sbjct: 80 TLAFSIPILMQL---KQPANK--GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHK 134
Query: 185 ---GGKEIEPQLEKIREGCHILIATPGRLNDFVSR--ASIDLKAVSFVVLDEADRMLD-- 237
K+ P+ K + IL+ TP RL + + IDL +V ++V+DE+D++ +
Sbjct: 135 AAVAAKKFGPKSSKKFD---ILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDG 191
Query: 238 -LGFEPQINKTSIYINPNRQTV---MTSATWNKDVQRVAKKYMVNPVKVNVGS 286
GF Q+ SI++ V M SAT+ DV++ K + N + V++G+
Sbjct: 192 KTGFRDQL--ASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGA 242
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|2OXC|B Chain B, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|3B7G|A Chain A, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
pdb|3B7G|B Chain B, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
Length = 230
Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 106/203 (52%), Gaps = 10/203 (4%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 666
+L L F PSP+Q +A P+ G D+I A++GTGKT F AL + +
Sbjct: 35 VLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIAL------DSLVL 88
Query: 667 ERAGPSVLVMAPTRELATQIEREVNKIDYK--GLKAVCVYGGKELEPQLEKIREGCHILI 724
E +L++APTRE+A QI + I K GL+ GG L ++++ CHI +
Sbjct: 89 ENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKK-CHIAV 147
Query: 725 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLG-FEPQINKTSIYINPNRQTVMTSAT 783
+PGR+ + ++ ++ +LDEAD++L+ G F+ QIN + ++Q + SAT
Sbjct: 148 GSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSAT 207
Query: 784 WNKDVQRVAKKYMVNPVKVNVGS 806
+ + + KYM +P V + S
Sbjct: 208 YPEFLANALTKYMRDPTFVRLNS 230
Score = 102 bits (255), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 106/203 (52%), Gaps = 10/203 (4%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 146
+L L F PSP+Q +A P+ G D+I A++GTGKT F AL + +
Sbjct: 35 VLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIAL------DSLVL 88
Query: 147 ERAGPSVLVMAPTRELATQIEREVNKIDYK--GLKAVCVYGGKEIEPQLEKIREGCHILI 204
E +L++APTRE+A QI + I K GL+ GG + ++++ CHI +
Sbjct: 89 ENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKK-CHIAV 147
Query: 205 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLG-FEPQINKTSIYINPNRQTVMTSAT 263
+PGR+ + ++ ++ +LDEAD++L+ G F+ QIN + ++Q + SAT
Sbjct: 148 GSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSAT 207
Query: 264 WNKDVQRVAKKYMVNPVKVNVGS 286
+ + + KYM +P V + S
Sbjct: 208 YPEFLANALTKYMRDPTFVRLNS 230
>pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain
pdb|2P6N|B Chain B, Human Dead-box Rna Helicase Ddx41, Helicase Domain
Length = 191
Score = 99.4 bits (246), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 83/139 (59%), Gaps = 3/139 (2%)
Query: 290 AATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKS 349
AA+ V Q++ + E+ K +L+E + + V++F +KA V A+ L + ++
Sbjct: 25 AASLDVIQEVEYVKEEAKMVYLLEC---LQKTPPPVLIFAEKKADVDAIHEYLLLKGVEA 81
Query: 350 CSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHR 409
+++G QE+R A+E G + VATDVAS+GLD P + HVINYD P IE YVHR
Sbjct: 82 VAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHR 141
Query: 410 VGRTGRAGKSGESITLMTR 428
+GRTG +G +G + T + +
Sbjct: 142 IGRTGCSGNTGIATTFINK 160
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 75/125 (60%), Gaps = 3/125 (2%)
Query: 810 AATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKS 869
AA+ V Q++ + E+ K +L+E + + V++F +KA V A+ L + ++
Sbjct: 25 AASLDVIQEVEYVKEEAKMVYLLEC---LQKTPPPVLIFAEKKADVDAIHEYLLLKGVEA 81
Query: 870 CSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHR 929
+++G QE+R A+E G + VATDVAS+GLD P + HVINYD P IE YVHR
Sbjct: 82 VAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHR 141
Query: 930 VGRTG 934
+GRTG
Sbjct: 142 IGRTG 146
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p
Length = 226
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 115/233 (49%), Gaps = 24/233 (10%)
Query: 53 VSVVTSDGQIDENPDFQIPNPVTSFKQAFQHY---PEILRQLENLSFTTPSPIQAQAWPI 109
V V +D Q D N +P+ S K +F PE+L+ + + F PS IQ +A P+
Sbjct: 3 VKVKLADIQADPN------SPLYSAK-SFDELGLAPELLKGIYAMKFQKPSKIQERALPL 55
Query: 110 LMSG--HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIE 167
L+ +MI +Q+GTGKT AF L L + E A P + +AP+RELA Q
Sbjct: 56 LLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVN------PEDASPQAICLAPSRELARQTL 109
Query: 168 REVNKIDYKGLKAVCVYGGKEIEPQLEKIRE-GCHILIATPGRLNDFVSRASIDLKAVSF 226
V ++ K + + EK ++ +++ TPG + D + R + L+ +
Sbjct: 110 EVVQEMG----KFTKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKI 165
Query: 227 VVLDEADRMLD-LGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVN 278
VLDEAD MLD G Q + ++ + Q V+ SAT+ V++ AKK + N
Sbjct: 166 FVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPN 218
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 115/233 (49%), Gaps = 24/233 (10%)
Query: 573 VSVVTSDGQIDENPDFQIPNPVTSFKQAFQHY---PEILRQLENLSFTTPSPIQAQAWPI 629
V V +D Q D N +P+ S K +F PE+L+ + + F PS IQ +A P+
Sbjct: 3 VKVKLADIQADPN------SPLYSAK-SFDELGLAPELLKGIYAMKFQKPSKIQERALPL 55
Query: 630 LMSG--HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIE 687
L+ +MI +Q+GTGKT AF L L + E A P + +AP+RELA Q
Sbjct: 56 LLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVN------PEDASPQAICLAPSRELARQTL 109
Query: 688 REVNKIDYKGLKAVCVYGGKELEPQLEKIRE-GCHILIATPGRLNDFVSRASIDLKAVSF 746
V ++ K + + EK ++ +++ TPG + D + R + L+ +
Sbjct: 110 EVVQEMG----KFTKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKI 165
Query: 747 VVLDEADRMLD-LGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVN 798
VLDEAD MLD G Q + ++ + Q V+ SAT+ V++ AKK + N
Sbjct: 166 FVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPN 218
>pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound
To Regulator Of Ribonuclease Activity A (Rraa)
Length = 170
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 70/110 (63%)
Query: 321 ERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATD 380
E + +VF+ ++ V +++ L +C L G++ Q R A++ +T G + VATD
Sbjct: 29 EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD 88
Query: 381 VASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430
VA+RG+D+PD++HV N+D P + Y+HR+GRT RAG+ G +I+L+ D
Sbjct: 89 VAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHD 138
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 59/94 (62%)
Query: 841 ERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATD 900
E + +VF+ ++ V +++ L +C L G++ Q R A++ +T G + VATD
Sbjct: 29 EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD 88
Query: 901 VASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
VA+RG+D+PD++HV N+D P + Y+HR+GRT
Sbjct: 89 VAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTA 122
>pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
pdb|2HJV|B Chain B, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
Length = 163
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 75/136 (55%), Gaps = 2/136 (1%)
Query: 292 THTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCS 351
T + +I + E+ K L + M E D ++F K V+ ++ +L
Sbjct: 7 TRNIEHAVIQVREENKFSLLKDVL--MTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDK 64
Query: 352 LYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVG 411
++G + QEDR + + G R VATDVA+RG+D+ +++ VINYD P E YVHR G
Sbjct: 65 IHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTG 124
Query: 412 RTGRAGKSGESITLMT 427
RTGRAG G++I+ +T
Sbjct: 125 RTGRAGNKGKAISFVT 140
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 2/123 (1%)
Query: 812 THTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCS 871
T + +I + E+ K L + M E D ++F K V+ ++ +L
Sbjct: 7 TRNIEHAVIQVREENKFSLLKDVL--MTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDK 64
Query: 872 LYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVG 931
++G + QEDR + + G R VATDVA+RG+D+ +++ VINYD P E YVHR G
Sbjct: 65 IHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTG 124
Query: 932 RTG 934
RTG
Sbjct: 125 RTG 127
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 114/212 (53%), Gaps = 16/212 (7%)
Query: 594 VTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMS--GHDMIGIAQTGTGKTFAFL 651
V SF++ + P++L+ + + F PS IQ A P++++ ++I +Q+GTGKT AF+
Sbjct: 91 VKSFEE-LRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 149
Query: 652 LPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID--YKGLKAVCVYGGKEL 709
L L Q P ++ P L ++PT ELA Q + + ++ Y LK G +L
Sbjct: 150 LAMLS----QVEPANKY--PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKL 203
Query: 710 EPQLEKIREGCHILIATPGRLNDFVSRAS-IDLKAVSFVVLDEADRMLDL-GFEPQINKT 767
E + +KI E I+I TPG + D+ S+ ID K + VLDEAD M+ G + Q +
Sbjct: 204 E-RGQKISE--QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRI 260
Query: 768 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNP 799
+ N Q ++ SAT+ V + A+K + +P
Sbjct: 261 QRMLPRNCQMLLFSATFEDSVWKFAQKVVPDP 292
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 114/212 (53%), Gaps = 16/212 (7%)
Query: 74 VTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMS--GHDMIGIAQTGTGKTFAFL 131
V SF++ + P++L+ + + F PS IQ A P++++ ++I +Q+GTGKT AF+
Sbjct: 91 VKSFEE-LRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 149
Query: 132 LPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID--YKGLKAVCVYGGKEI 189
L L Q P ++ P L ++PT ELA Q + + ++ Y LK G ++
Sbjct: 150 LAMLS----QVEPANKY--PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKL 203
Query: 190 EPQLEKIREGCHILIATPGRLNDFVSRAS-IDLKAVSFVVLDEADRMLDL-GFEPQINKT 247
E + +KI E I+I TPG + D+ S+ ID K + VLDEAD M+ G + Q +
Sbjct: 204 E-RGQKISE--QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRI 260
Query: 248 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNP 279
+ N Q ++ SAT+ V + A+K + +P
Sbjct: 261 QRMLPRNCQMLLFSATFEDSVWKFAQKVVPDP 292
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 114/212 (53%), Gaps = 16/212 (7%)
Query: 594 VTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMS--GHDMIGIAQTGTGKTFAFL 651
V SF++ + P++L+ + + F PS IQ A P++++ ++I +Q+GTGKT AF+
Sbjct: 24 VKSFEE-LRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 82
Query: 652 LPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID--YKGLKAVCVYGGKEL 709
L L Q P ++ P L ++PT ELA Q + + ++ Y LK G +L
Sbjct: 83 LAMLS----QVEPANKY--PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKL 136
Query: 710 EPQLEKIREGCHILIATPGRLNDFVSRAS-IDLKAVSFVVLDEADRMLDL-GFEPQINKT 767
E + +KI E I+I TPG + D+ S+ ID K + VLDEAD M+ G + Q +
Sbjct: 137 E-RGQKISE--QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRI 193
Query: 768 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNP 799
+ N Q ++ SAT+ V + A+K + +P
Sbjct: 194 QRMLPRNCQMLLFSATFEDSVWKFAQKVVPDP 225
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 114/212 (53%), Gaps = 16/212 (7%)
Query: 74 VTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMS--GHDMIGIAQTGTGKTFAFL 131
V SF++ + P++L+ + + F PS IQ A P++++ ++I +Q+GTGKT AF+
Sbjct: 24 VKSFEE-LRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 82
Query: 132 LPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID--YKGLKAVCVYGGKEI 189
L L Q P ++ P L ++PT ELA Q + + ++ Y LK G ++
Sbjct: 83 LAMLS----QVEPANKY--PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKL 136
Query: 190 EPQLEKIREGCHILIATPGRLNDFVSRAS-IDLKAVSFVVLDEADRMLDL-GFEPQINKT 247
E + +KI E I+I TPG + D+ S+ ID K + VLDEAD M+ G + Q +
Sbjct: 137 E-RGQKISE--QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRI 193
Query: 248 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNP 279
+ N Q ++ SAT+ V + A+K + +P
Sbjct: 194 QRMLPRNCQMLLFSATFEDSVWKFAQKVVPDP 225
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p
Length = 187
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 75/134 (55%), Gaps = 8/134 (5%)
Query: 303 DEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDRE 362
+E +K D L E + M ++F+ K + + + L + + L+GDL ++R+
Sbjct: 18 NEADKFDVLTELYGLM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERD 75
Query: 363 IALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIE------EYVHRVGRTGRA 416
++D G +++ + T+V +RG+D+P ++ V+NYD P+ Y+HR+GRTGR
Sbjct: 76 RLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRF 135
Query: 417 GKSGESITLMTRKD 430
G+ G +I+ + K+
Sbjct: 136 GRKGVAISFVHDKN 149
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 66/120 (55%), Gaps = 8/120 (6%)
Query: 823 DEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDRE 882
+E +K D L E + M ++F+ K + + + L + + L+GDL ++R+
Sbjct: 18 NEADKFDVLTELYGLM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERD 75
Query: 883 IALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIE------EYVHRVGRTGEF 936
++D G +++ + T+V +RG+D+P ++ V+NYD P+ Y+HR+GRTG F
Sbjct: 76 RLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRF 135
>pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAX|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
Length = 193
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 79/154 (51%), Gaps = 6/154 (3%)
Query: 278 NPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSA 337
+P ++N+ ++ VTQ + E +K L F + + ++ ++F V
Sbjct: 4 DPYEINL--MEELTLKGVTQYYAYVTERQKVHCLNTLFSRL--QINQSIIFCNSSQRVEL 59
Query: 338 MSSDLACQYRKSC-SLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVIN 396
++ ++ Q SC ++ + QE R D +G R V TD+ +RG+D+ + VIN
Sbjct: 60 LAKKIS-QLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVIN 118
Query: 397 YDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430
+DFP E Y+HR+GR+GR G G +I L+T D
Sbjct: 119 FDFPKLAETYLHRIGRSGRFGHLGLAINLITYDD 152
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 6/140 (4%)
Query: 798 NPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSA 857
+P ++N+ ++ VTQ + E +K L F + + ++ ++F V
Sbjct: 4 DPYEINL--MEELTLKGVTQYYAYVTERQKVHCLNTLFSRL--QINQSIIFCNSSQRVEL 59
Query: 858 MSSDLACQYRKSC-SLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVIN 916
++ ++ Q SC ++ + QE R D +G R V TD+ +RG+D+ + VIN
Sbjct: 60 LAKKIS-QLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVIN 118
Query: 917 YDFPSHIEEYVHRVGRTGEF 936
+DFP E Y+HR+GR+G F
Sbjct: 119 FDFPKLAETYLHRIGRSGRF 138
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein
Dbp5
Length = 189
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 66/111 (59%), Gaps = 6/111 (5%)
Query: 326 MVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRG 385
++F+ K + + + L + + L+GDL ++R+ ++D G +++ + T+V +RG
Sbjct: 41 IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARG 100
Query: 386 LDVPDLTHVINYDFPSHIE------EYVHRVGRTGRAGKSGESITLMTRKD 430
+D+P ++ V+NYD P+ Y+HR+GRTGR G+ G +I+ + K+
Sbjct: 101 IDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 151
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 57/97 (58%), Gaps = 6/97 (6%)
Query: 846 MVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRG 905
++F+ K + + + L + + L+GDL ++R+ ++D G +++ + T+V +RG
Sbjct: 41 IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARG 100
Query: 906 LDVPDLTHVINYDFPSHIE------EYVHRVGRTGEF 936
+D+P ++ V+NYD P+ Y+HR+GRTG F
Sbjct: 101 IDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGRF 137
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
H337r And Ip6
pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
And Ip6
Length = 188
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 66/111 (59%), Gaps = 6/111 (5%)
Query: 326 MVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRG 385
++F+ K + + + L + + L+GDL ++R+ ++D G +++ + T+V +RG
Sbjct: 40 IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARG 99
Query: 386 LDVPDLTHVINYDFPSHIE------EYVHRVGRTGRAGKSGESITLMTRKD 430
+D+P ++ V+NYD P+ Y+HR+GRTGR G+ G +I+ + K+
Sbjct: 100 IDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 150
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 57/97 (58%), Gaps = 6/97 (6%)
Query: 846 MVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRG 905
++F+ K + + + L + + L+GDL ++R+ ++D G +++ + T+V +RG
Sbjct: 40 IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARG 99
Query: 906 LDVPDLTHVINYDFPSHIE------EYVHRVGRTGEF 936
+D+P ++ V+NYD P+ Y+HR+GRTG F
Sbjct: 100 IDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGRF 136
>pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
pdb|4DB4|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
Length = 256
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 6/124 (4%)
Query: 320 EERD---KVMVFMGRKASVSAMSSDLACQYRKSC---SLYGDLSQEDREIALEDITSGYA 373
+ERD K ++F S + S L +++K +G ++Q R ++ +
Sbjct: 28 KERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDES 87
Query: 374 RICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSH 433
I V TDV +RG+D P++ V+ PS + Y+HR+GRT R+GK G S+ + + +
Sbjct: 88 GILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPF 147
Query: 434 AHEI 437
E+
Sbjct: 148 VREL 151
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 840 EERD---KVMVFMGRKASVSAMSSDLACQYRKSC---SLYGDLSQEDREIALEDITSGYA 893
+ERD K ++F S + S L +++K +G ++Q R ++ +
Sbjct: 28 KERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDES 87
Query: 894 RICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
I V TDV +RG+D P++ V+ PS + Y+HR+GRT
Sbjct: 88 GILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTA 128
>pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|D Chain D, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 6/124 (4%)
Query: 320 EERD---KVMVFMGRKASVSAMSSDLACQYRKSC---SLYGDLSQEDREIALEDITSGYA 373
+ERD K ++F S + S L +++K +G ++Q R ++ +
Sbjct: 28 KERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDES 87
Query: 374 RICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSH 433
I V TDV +RG+D P++ V+ PS + Y+HR+GRT R+GK G S+ + + +
Sbjct: 88 GILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPF 147
Query: 434 AHEI 437
E+
Sbjct: 148 VREL 151
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 840 EERD---KVMVFMGRKASVSAMSSDLACQYRKSC---SLYGDLSQEDREIALEDITSGYA 893
+ERD K ++F S + S L +++K +G ++Q R ++ +
Sbjct: 28 KERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDES 87
Query: 894 RICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
I V TDV +RG+D P++ V+ PS + Y+HR+GRT
Sbjct: 88 GILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTA 128
>pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 6/124 (4%)
Query: 320 EERD---KVMVFMGRKASVSAMSSDLACQYRKSC---SLYGDLSQEDREIALEDITSGYA 373
+ERD K ++F S + S L +++K +G ++Q R ++ +
Sbjct: 28 KERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDES 87
Query: 374 RICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSH 433
I V TDV +RG+D P++ V+ PS + Y+HR+GRT R+GK G S+ + + +
Sbjct: 88 GILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPF 147
Query: 434 AHEI 437
E+
Sbjct: 148 VREL 151
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 840 EERD---KVMVFMGRKASVSAMSSDLACQYRKSC---SLYGDLSQEDREIALEDITSGYA 893
+ERD K ++F S + S L +++K +G ++Q R ++ +
Sbjct: 28 KERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDES 87
Query: 894 RICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
I V TDV +RG+D P++ V+ PS + Y+HR+GRT
Sbjct: 88 GILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTA 128
>pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56
Length = 172
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 2/138 (1%)
Query: 290 AATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKS 349
+ H + Q + L ++EK L + D + E ++V++F+ A++ L Q +
Sbjct: 1 GSLHGLQQYYVKLKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPA 58
Query: 350 CSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHR 409
+++ + QE+R + RI VAT++ RG+D+ + NYD P + Y+HR
Sbjct: 59 IAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHR 118
Query: 410 VGRTGRAGKSGESITLMT 427
V R GR G G +IT ++
Sbjct: 119 VARAGRFGTKGLAITFVS 136
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 2/127 (1%)
Query: 810 AATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKS 869
+ H + Q + L ++EK L + D + E ++V++F+ A++ L Q +
Sbjct: 1 GSLHGLQQYYVKLKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPA 58
Query: 870 CSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHR 929
+++ + QE+R + RI VAT++ RG+D+ + NYD P + Y+HR
Sbjct: 59 IAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHR 118
Query: 930 VGRTGEF 936
V R G F
Sbjct: 119 VARAGRF 125
>pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast
Eif4a
Length = 165
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 81/135 (60%), Gaps = 2/135 (1%)
Query: 303 DEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDRE 362
+E+ K + L + +D++ + ++F + V +++ L ++Y DL Q++R+
Sbjct: 13 EEEYKYECLTDLYDSIS--VTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERD 70
Query: 363 IALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGES 422
+++ SG +RI ++TD+ +RG+DV ++ VINYD P++ E Y+HR+GR GR G+ G +
Sbjct: 71 TIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVA 130
Query: 423 ITLMTRKDWSHAHEI 437
I +T +D E+
Sbjct: 131 INFVTNEDVGAMREL 145
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 67/109 (61%), Gaps = 2/109 (1%)
Query: 823 DEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDRE 882
+E+ K + L + +D++ + ++F + V +++ L ++Y DL Q++R+
Sbjct: 13 EEEYKYECLTDLYDSIS--VTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERD 70
Query: 883 IALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVG 931
+++ SG +RI ++TD+ +RG+DV ++ VINYD P++ E Y+HR+G
Sbjct: 71 TIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIG 119
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 78/358 (21%), Positives = 150/358 (41%), Gaps = 47/358 (13%)
Query: 92 ENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGP 151
E + P Q + ++SG D + + TG GK+ + +PAL+ L
Sbjct: 19 ETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGL----------- 67
Query: 152 SVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCH-----ILIAT 206
+V++P L + ++ +V+++ G+ A C+ + E QLE + GC +L
Sbjct: 68 -TVVVSP---LISLMKDQVDQLQANGVAAACLNSTQTREQQLE-VMTGCRTGQIRLLYIA 122
Query: 207 PGRL--NDFVSRASIDLKAVSFVVLDEADRMLDLG--FEPQINKTSIYINPNRQ------ 256
P RL ++F+ + V V DEA + G F P+ + RQ
Sbjct: 123 PERLMLDNFLEHLA-HWNPVLLAV-DEAHCISQWGHDFRPEYAA----LGQLRQRFPTLP 176
Query: 257 -TVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFF 315
+T+ + Q + + +N + + S D + +++++ + D LM +
Sbjct: 177 FMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNI-----RYMLMEKFKPLDQLMRY- 230
Query: 316 DNMDEERDKV-MVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYAR 374
+ E+R K +++ +A V ++ L + + + + L R E +
Sbjct: 231 --VQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQ 288
Query: 375 ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWS 432
I VAT G++ P++ V+++D P +IE Y GR GR G E++ D +
Sbjct: 289 IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 74/340 (21%), Positives = 143/340 (42%), Gaps = 47/340 (13%)
Query: 612 ENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGP 671
E + P Q + ++SG D + + TG GK+ + +PAL+ L
Sbjct: 19 ETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGL----------- 67
Query: 672 SVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREGCH-----ILIAT 726
+V++P L + ++ +V+++ G+ A C+ + E QLE + GC +L
Sbjct: 68 -TVVVSP---LISLMKDQVDQLQANGVAAACLNSTQTREQQLE-VMTGCRTGQIRLLYIA 122
Query: 727 PGRL--NDFVSRASIDLKAVSFVVLDEADRMLDLG--FEPQINKTSIYINPNRQ------ 776
P RL ++F+ + V V DEA + G F P+ + RQ
Sbjct: 123 PERLMLDNFLEHLA-HWNPVLLAV-DEAHCISQWGHDFRPEYAA----LGQLRQRFPTLP 176
Query: 777 -TVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFF 835
+T+ + Q + + +N + + S D + +++++ + D LM +
Sbjct: 177 FMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNI-----RYMLMEKFKPLDQLMRY- 230
Query: 836 DNMDEERDKV-MVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYAR 894
+ E+R K +++ +A V ++ L + + + + L R E +
Sbjct: 231 --VQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQ 288
Query: 895 ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
I VAT G++ P++ V+++D P +IE Y GR G
Sbjct: 289 IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAG 328
>pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAQ|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAR|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAR|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAS|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
pdb|3EAS|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
Length = 212
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 35/86 (40%), Positives = 48/86 (55%)
Query: 323 DKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVA 382
D+ MVF KA ++ L + +L+GDLSQ +RE L G R+ VATDVA
Sbjct: 32 DRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVA 91
Query: 383 SRGLDVPDLTHVINYDFPSHIEEYVH 408
+RGLD+P + V++Y P E Y H
Sbjct: 92 ARGLDIPQVDLVVHYRLPDRAEAYQH 117
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 35/86 (40%), Positives = 48/86 (55%)
Query: 843 DKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVA 902
D+ MVF KA ++ L + +L+GDLSQ +RE L G R+ VATDVA
Sbjct: 32 DRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVA 91
Query: 903 SRGLDVPDLTHVINYDFPSHIEEYVH 928
+RGLD+P + V++Y P E Y H
Sbjct: 92 ARGLDIPQVDLVVHYRLPDRAEAYQH 117
>pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
pdb|2RB4|B Chain B, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
Length = 175
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 21/135 (15%)
Query: 313 EFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCS---------------LYGDLS 357
+++ + +DK S++ + + CQ R++ L G+L+
Sbjct: 10 QYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELT 69
Query: 358 QEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSH------IEEYVHRVG 411
E R ++ G ++ + T+V +RG+DV +T V+N+D P E Y+HR+G
Sbjct: 70 VEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIG 129
Query: 412 RTGRAGKSGESITLM 426
RTGR GK G + ++
Sbjct: 130 RTGRFGKKGLAFNMI 144
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 21/125 (16%)
Query: 833 EFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCS---------------LYGDLS 877
+++ + +DK S++ + + CQ R++ L G+L+
Sbjct: 10 QYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELT 69
Query: 878 QEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSH------IEEYVHRVG 931
E R ++ G ++ + T+V +RG+DV +T V+N+D P E Y+HR+G
Sbjct: 70 VEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIG 129
Query: 932 RTGEF 936
RTG F
Sbjct: 130 RTGRF 134
>pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including
The C-Terminal Reca Domain, The Dimerization Domain, And
The Rna Binding Domain
Length = 300
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 33/86 (38%), Positives = 48/86 (55%)
Query: 323 DKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVA 382
D+ MVF KA ++ L + +L+GD+SQ +RE + G R+ VATDVA
Sbjct: 29 DRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVA 88
Query: 383 SRGLDVPDLTHVINYDFPSHIEEYVH 408
+RGLD+P + V++Y P E Y H
Sbjct: 89 ARGLDIPQVDLVVHYRMPDRAEAYQH 114
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 33/86 (38%), Positives = 48/86 (55%)
Query: 843 DKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVA 902
D+ MVF KA ++ L + +L+GD+SQ +RE + G R+ VATDVA
Sbjct: 29 DRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVA 88
Query: 903 SRGLDVPDLTHVINYDFPSHIEEYVH 928
+RGLD+P + V++Y P E Y H
Sbjct: 89 ARGLDIPQVDLVVHYRMPDRAEAYQH 114
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 77/348 (22%), Positives = 142/348 (40%), Gaps = 47/348 (13%)
Query: 92 ENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGP 151
E + P Q + ++SG D + + TG GK+ + +PAL+ L
Sbjct: 19 ETFGYQQFRPGQEEIIDTVLSGRDCLVVXPTGGGKSLCYQIPALLLNGL----------- 67
Query: 152 SVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCH-----ILIAT 206
+V++P L + + +V+++ G+ A C+ + E QLE + GC +L
Sbjct: 68 -TVVVSP---LISLXKDQVDQLQANGVAAACLNSTQTREQQLE-VXTGCRTGQIRLLYIA 122
Query: 207 PGRL--NDFVSRASIDLKAVSFVVLDEADRMLDLG--FEPQINKTSIYINPNRQ------ 256
P RL ++F+ + V + +DEA + G F P+ + RQ
Sbjct: 123 PERLXLDNFLEHLA-HWNPV-LLAVDEAHCISQWGHDFRPEYAA----LGQLRQRFPTLP 176
Query: 257 -TVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFF 315
+T+ + Q + + +N + + S D + I EK L +
Sbjct: 177 FXALTATADDTTRQDIVRLLGLNDPLIQISSFD--------RPNIRYXLXEKFKPLDQLX 228
Query: 316 DNMDEERDKV-MVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYAR 374
+ E+R K +++ +A V ++ L + + + + L R E +
Sbjct: 229 RYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQ 288
Query: 375 ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGES 422
I VAT G++ P++ V+++D P +IE Y GR GR G E+
Sbjct: 289 IVVATVAFGXGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEA 336
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 74/340 (21%), Positives = 138/340 (40%), Gaps = 47/340 (13%)
Query: 612 ENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGP 671
E + P Q + ++SG D + + TG GK+ + +PAL+ L
Sbjct: 19 ETFGYQQFRPGQEEIIDTVLSGRDCLVVXPTGGGKSLCYQIPALLLNGL----------- 67
Query: 672 SVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREGCH-----ILIAT 726
+V++P L + + +V+++ G+ A C+ + E QLE + GC +L
Sbjct: 68 -TVVVSP---LISLXKDQVDQLQANGVAAACLNSTQTREQQLE-VXTGCRTGQIRLLYIA 122
Query: 727 PGRL--NDFVSRASIDLKAVSFVVLDEADRMLDLG--FEPQINKTSIYINPNRQ------ 776
P RL ++F+ + V + +DEA + G F P+ + RQ
Sbjct: 123 PERLXLDNFLEHLA-HWNPV-LLAVDEAHCISQWGHDFRPEYAA----LGQLRQRFPTLP 176
Query: 777 -TVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFF 835
+T+ + Q + + +N + + S D + I EK L +
Sbjct: 177 FXALTATADDTTRQDIVRLLGLNDPLIQISSFD--------RPNIRYXLXEKFKPLDQLX 228
Query: 836 DNMDEERDKV-MVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYAR 894
+ E+R K +++ +A V ++ L + + + + L R E +
Sbjct: 229 RYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQ 288
Query: 895 ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
I VAT G++ P++ V+++D P +IE Y GR G
Sbjct: 289 IVVATVAFGXGINKPNVRFVVHFDIPRNIESYYQETGRAG 328
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 11/125 (8%)
Query: 320 EERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGD--------LSQEDREIALEDITSG 371
++ K++VF + + + ++L K+ G LSQ ++++ L++ G
Sbjct: 359 KQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARG 418
Query: 372 YARICVATDVASRGLDVPDLTHVINYD-FPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430
+ VAT V GLDVP++ V+ Y+ PS I + R GRTGR G I LM +
Sbjct: 419 EFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRS-IQRRGRTGRH-MPGRVIILMAKGT 476
Query: 431 WSHAH 435
A+
Sbjct: 477 RDEAY 481
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 840 EERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGD--------LSQEDREIALEDITSG 891
++ K++VF + + + ++L K+ G LSQ ++++ L++ G
Sbjct: 359 KQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARG 418
Query: 892 YARICVATDVASRGLDVPDLTHVINYD-FPSHIEEYVHRVGRTG 934
+ VAT V GLDVP++ V+ Y+ PS I + R GRTG
Sbjct: 419 EFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRS-IQRRGRTG 461
Score = 36.6 bits (83), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 8/113 (7%)
Query: 122 TGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAV 181
TG GKT L+ +I + T + G VL++APT+ L Q ++ + +
Sbjct: 32 TGLGKT---LIAMMIAEYRLT-----KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKI 83
Query: 182 CVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADR 234
G++ + K +++ATP + + + I L+ VS +V DEA R
Sbjct: 84 VALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHR 136
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 8/113 (7%)
Query: 642 TGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAV 701
TG GKT L+ +I + T + G VL++APT+ L Q ++ + +
Sbjct: 32 TGLGKT---LIAMMIAEYRLT-----KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKI 83
Query: 702 CVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADR 754
G++ + K +++ATP + + + I L+ VS +V DEA R
Sbjct: 84 VALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHR 136
>pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2V1X|B Chain B, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2WWY|A Chain A, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
pdb|2WWY|B Chain B, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
Length = 591
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 68/329 (20%), Positives = 129/329 (39%), Gaps = 29/329 (8%)
Query: 101 PIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH--LQTTPISERAGPSVLVMAP 158
P+Q + + M+G ++ + TG GK+ + LPAL L P+ ++V+
Sbjct: 47 PLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVLKQ 106
Query: 159 TRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLND---FVS 215
AT + +K K + A V E++ ++ TP ++ F+S
Sbjct: 107 LGISATMLNASSSKEHVKWVHAEMVNKNSELK-----------LIYVTPEKIAKSKMFMS 155
Query: 216 RASIDLKAVSF--VVLDEADRMLDLG--FEPQINKTSIYIN--PNRQTVMTSATWNKDVQ 269
R +A F + +DE G F P I PN + +AT V
Sbjct: 156 RLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVL 215
Query: 270 RVAKKYM-VNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVF 328
A+K + + S + + ++ ED +D +++ + + + ++
Sbjct: 216 TDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIED-IVKLINGRYKGQSGIIYC 274
Query: 329 MGRKAS--VSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGL 386
+K S V+ +L + + + +L ED+ ++ ++ VAT G+
Sbjct: 275 FSQKDSEQVTVSLQNLGIH---AGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGI 331
Query: 387 DVPDLTHVINYDFPSHIEEYVHRVGRTGR 415
D PD+ VI++ +E Y GR GR
Sbjct: 332 DKPDVRFVIHHSMSKSMENYYQESGRAGR 360
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/328 (20%), Positives = 128/328 (39%), Gaps = 29/328 (8%)
Query: 621 PIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH--LQTTPISERAGPSVLVMAP 678
P+Q + + M+G ++ + TG GK+ + LPAL L P+ ++V+
Sbjct: 47 PLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVLKQ 106
Query: 679 TRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLND---FVS 735
AT + +K K + A V EL+ ++ TP ++ F+S
Sbjct: 107 LGISATMLNASSSKEHVKWVHAEMVNKNSELK-----------LIYVTPEKIAKSKMFMS 155
Query: 736 RASIDLKAVSF--VVLDEADRMLDLG--FEPQINKTSIYIN--PNRQTVMTSATWNKDVQ 789
R +A F + +DE G F P I PN + +AT V
Sbjct: 156 RLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVL 215
Query: 790 RVAKKYM-VNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVF 848
A+K + + S + + ++ ED +D +++ + + + ++
Sbjct: 216 TDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIED-IVKLINGRYKGQSGIIYC 274
Query: 849 MGRKAS--VSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGL 906
+K S V+ +L + + + +L ED+ ++ ++ VAT G+
Sbjct: 275 FSQKDSEQVTVSLQNLGIH---AGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGI 331
Query: 907 DVPDLTHVINYDFPSHIEEYVHRVGRTG 934
D PD+ VI++ +E Y GR G
Sbjct: 332 DKPDVRFVIHHSMSKSMENYYQESGRAG 359
>pdb|2FZL|A Chain A, Structure Of C-Terminal Domain Of Archaeoglobus Fulgidus
Xpb
Length = 219
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 33/69 (47%)
Query: 357 SQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRA 416
S+E+RE LE +G R V++ V G+DVPD + EY+ R+GR R
Sbjct: 144 SREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRP 203
Query: 417 GKSGESITL 425
K + L
Sbjct: 204 SKGKKEAVL 212
Score = 38.1 bits (87), Expect = 0.024, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 877 SQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGR 932
S+E+RE LE +G R V++ V G+DVPD + EY+ R+GR
Sbjct: 144 SREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGR 199
>pdb|2FWR|A Chain A, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|B Chain B, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|C Chain C, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|D Chain D, Structure Of Archaeoglobus Fulgidis Xpb
Length = 472
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%)
Query: 357 SQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRA 416
S+E+RE LE +G R V++ V G+DVPD + EY+ R+GR R
Sbjct: 379 SREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRP 438
Query: 417 GKSGESITL 425
K + L
Sbjct: 439 SKGKKEAVL 447
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 877 SQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGR 932
S+E+RE LE +G R V++ V G+DVPD + EY+ R+GR
Sbjct: 379 SREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGR 434
>pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of
Rig-I
Length = 695
Score = 36.2 bits (82), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 6/124 (4%)
Query: 631 MSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREV 690
M G + I A TG GKTF LL + HL+ P ++ V+ A + Q +
Sbjct: 25 MKGKNTIICAPTGCGKTFVSLL--ICEHHLKKFPQGQKG--KVVFFANQIPVYEQQKSVF 80
Query: 691 NK-IDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASI-DLKAVSFVV 748
+K + G + + G +E+I E I+I TP L + + + +I L + ++
Sbjct: 81 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMI 140
Query: 749 LDEA 752
DE
Sbjct: 141 FDEC 144
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 6/124 (4%)
Query: 111 MSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREV 170
M G + I A TG GKTF LL + HL+ P ++ V+ A + Q +
Sbjct: 25 MKGKNTIICAPTGCGKTFVSLL--ICEHHLKKFPQGQKG--KVVFFANQIPVYEQQKSVF 80
Query: 171 NK-IDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASI-DLKAVSFVV 228
+K + G + + G +E+I E I+I TP L + + + +I L + ++
Sbjct: 81 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMI 140
Query: 229 LDEA 232
DE
Sbjct: 141 FDEC 144
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 370 SGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMT 427
SG I +AT VA G+D+ VI Y++ ++ + + GR GRA G L+T
Sbjct: 458 SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA--RGSKCFLLT 512
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 890 SGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGR 932
SG I +AT VA G+D+ VI Y++ ++ + + GR
Sbjct: 458 SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 500
>pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I
Length = 687
Score = 36.2 bits (82), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 6/124 (4%)
Query: 631 MSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREV 690
M G + I A TG GKTF LL + HL+ P ++ V+ A + Q +
Sbjct: 17 MKGKNTIICAPTGCGKTFVSLL--ICEHHLKKFPQGQKG--KVVFFANQIPVYEQNKSVF 72
Query: 691 NK-IDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASI-DLKAVSFVV 748
+K + G + + G +E+I E I+I TP L + + + +I L + ++
Sbjct: 73 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMI 132
Query: 749 LDEA 752
DE
Sbjct: 133 FDEC 136
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 6/124 (4%)
Query: 111 MSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREV 170
M G + I A TG GKTF LL + HL+ P ++ V+ A + Q +
Sbjct: 17 MKGKNTIICAPTGCGKTFVSLL--ICEHHLKKFPQGQKG--KVVFFANQIPVYEQNKSVF 72
Query: 171 NK-IDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASI-DLKAVSFVV 228
+K + G + + G +E+I E I+I TP L + + + +I L + ++
Sbjct: 73 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMI 132
Query: 229 LDEA 232
DE
Sbjct: 133 FDEC 136
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 370 SGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMT 427
SG I +AT VA G+D+ VI Y++ ++ + + GR GRA G L+T
Sbjct: 450 SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA--RGSKCFLLT 504
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 890 SGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGR 932
SG I +AT VA G+D+ VI Y++ ++ + + GR
Sbjct: 450 SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 492
>pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I
Length = 696
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 6/124 (4%)
Query: 631 MSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREV 690
M G + I A TG GKTF LL + HL+ P ++ V+ A + Q +
Sbjct: 26 MKGKNTIICAPTGCGKTFVSLL--ICEHHLKKFPQGQKG--KVVFFANQIPVYEQNKSVF 81
Query: 691 NK-IDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASI-DLKAVSFVV 748
+K + G + + G +E+I E I+I TP L + + + +I L + ++
Sbjct: 82 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMI 141
Query: 749 LDEA 752
DE
Sbjct: 142 FDEC 145
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 6/124 (4%)
Query: 111 MSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREV 170
M G + I A TG GKTF LL + HL+ P ++ V+ A + Q +
Sbjct: 26 MKGKNTIICAPTGCGKTFVSLL--ICEHHLKKFPQGQKG--KVVFFANQIPVYEQNKSVF 81
Query: 171 NK-IDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASI-DLKAVSFVV 228
+K + G + + G +E+I E I+I TP L + + + +I L + ++
Sbjct: 82 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMI 141
Query: 229 LDEA 232
DE
Sbjct: 142 FDEC 145
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 370 SGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMT 427
SG I +AT VA G+D+ VI Y++ ++ + + GR GRA G L+T
Sbjct: 459 SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA--RGSKCFLLT 513
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 890 SGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGR 932
SG I +AT VA G+D+ VI Y++ ++ + + GR
Sbjct: 459 SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 501
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In
Complex With Unwound Dna
pdb|2P6U|A Chain A, Apo Structure Of The Hel308 Superfamily 2 Helicase
Length = 702
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 10/103 (9%)
Query: 338 MSSDLACQYRKSCSLY-GDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVIN 396
MS LA RK + + L R + + G ++ VAT + G+++P ++
Sbjct: 287 MSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVR 346
Query: 397 --YDFPSH-----IEEYVHRVGRTGRAG--KSGESITLMTRKD 430
Y F + + EY GR GR G + GE+I ++ ++D
Sbjct: 347 SLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRD 389
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 621 PIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTR 680
P QA+A + SG +++ T GKT + A++ ++ G L + P R
Sbjct: 28 PPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEM-AMVREAIK--------GGKSLYVVPLR 78
Query: 681 ELATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASID 740
LA + K + GL+ G + E + E + + C I++ T + + + +
Sbjct: 79 ALAGEKYESFKKWEKIGLRIGISTG--DYESRDEHLGD-CDIIVTTSEKADSLIRNRASW 135
Query: 741 LKAVSFVVLDE 751
+KAVS +V+DE
Sbjct: 136 IKAVSCLVVDE 146
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 101 PIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTR 160
P QA+A + SG +++ T GKT + A++ ++ G L + P R
Sbjct: 28 PPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEM-AMVREAIK--------GGKSLYVVPLR 78
Query: 161 ELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASID 220
LA + K + GL+ G + E + E + + C I++ T + + + +
Sbjct: 79 ALAGEKYESFKKWEKIGLRIGISTG--DYESRDEHLGD-CDIIVTTSEKADSLIRNRASW 135
Query: 221 LKAVSFVVLDE 231
+KAVS +V+DE
Sbjct: 136 IKAVSCLVVDE 146
>pdb|4A2W|A Chain A, Structure Of Full-Length Duck Rig-I
pdb|4A2W|B Chain B, Structure Of Full-Length Duck Rig-I
Length = 936
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 8/125 (6%)
Query: 111 MSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREV 170
++G + + A TG+GKTF +L + H Q P +A +V T+ + ++ V
Sbjct: 261 INGKNALICAPTGSGKTFVSIL--ICEHHFQNMPAGRKAK---VVFLATKVPVYEQQKNV 315
Query: 171 NK--IDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRL-NDFVSRASIDLKAVSFV 227
K + +G + G +EK+ E I++ TP L N F L + +
Sbjct: 316 FKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLM 375
Query: 228 VLDEA 232
+ DE
Sbjct: 376 IFDEC 380
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 8/125 (6%)
Query: 631 MSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREV 690
++G + + A TG+GKTF +L + H Q P +A +V T+ + ++ V
Sbjct: 261 INGKNALICAPTGSGKTFVSIL--ICEHHFQNMPAGRKAK---VVFLATKVPVYEQQKNV 315
Query: 691 NK--IDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRL-NDFVSRASIDLKAVSFV 747
K + +G + G +EK+ E I++ TP L N F L + +
Sbjct: 316 FKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLM 375
Query: 748 VLDEA 752
+ DE
Sbjct: 376 IFDEC 380
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 369 TSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTR 428
TS R+ +AT VA G+D+ V+ Y++ ++ + + GR GRA +G L+T
Sbjct: 691 TSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA--AGSKCILVTS 747
Query: 429 K 429
K
Sbjct: 748 K 748
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 889 TSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGR 932
TS R+ +AT VA G+D+ V+ Y++ ++ + + GR
Sbjct: 691 TSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR 734
>pdb|4A2Q|A Chain A, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|B Chain B, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|D Chain D, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|E Chain E, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
Length = 797
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 8/125 (6%)
Query: 111 MSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREV 170
++G + + A TG+GKTF +L + H Q P +A +V T+ + ++ V
Sbjct: 261 INGKNALICAPTGSGKTFVSIL--ICEHHFQNMPAGRKAK---VVFLATKVPVYEQQKNV 315
Query: 171 NK--IDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRL-NDFVSRASIDLKAVSFV 227
K + +G + G +EK+ E I++ TP L N F L + +
Sbjct: 316 FKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLM 375
Query: 228 VLDEA 232
+ DE
Sbjct: 376 IFDEC 380
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 8/125 (6%)
Query: 631 MSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREV 690
++G + + A TG+GKTF +L + H Q P +A +V T+ + ++ V
Sbjct: 261 INGKNALICAPTGSGKTFVSIL--ICEHHFQNMPAGRKAK---VVFLATKVPVYEQQKNV 315
Query: 691 NK--IDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRL-NDFVSRASIDLKAVSFV 747
K + +G + G +EK+ E I++ TP L N F L + +
Sbjct: 316 FKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLM 375
Query: 748 VLDEA 752
+ DE
Sbjct: 376 IFDEC 380
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 369 TSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTR 428
TS R+ +AT VA G+D+ V+ Y++ ++ + + GR GRA +G L+T
Sbjct: 691 TSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA--AGSKCILVTS 747
Query: 429 K 429
K
Sbjct: 748 K 748
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 889 TSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGR 932
TS R+ +AT VA G+D+ V+ Y++ ++ + + GR
Sbjct: 691 TSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR 734
>pdb|4A2P|A Chain A, Structure Of Duck Rig-I Helicase Domain
pdb|4A36|A Chain A, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
pdb|4A36|B Chain B, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
Length = 556
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 8/125 (6%)
Query: 111 MSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREV 170
++G + + A TG+GKTF +L + H Q P +A +V T+ + ++ V
Sbjct: 20 INGKNALICAPTGSGKTFVSIL--ICEHHFQNMPAGRKAK---VVFLATKVPVYEQQKNV 74
Query: 171 NK--IDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRL-NDFVSRASIDLKAVSFV 227
K + +G + G +EK+ E I++ TP L N F L + +
Sbjct: 75 FKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLM 134
Query: 228 VLDEA 232
+ DE
Sbjct: 135 IFDEC 139
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 8/125 (6%)
Query: 631 MSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREV 690
++G + + A TG+GKTF +L + H Q P +A +V T+ + ++ V
Sbjct: 20 INGKNALICAPTGSGKTFVSIL--ICEHHFQNMPAGRKAK---VVFLATKVPVYEQQKNV 74
Query: 691 NK--IDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRL-NDFVSRASIDLKAVSFV 747
K + +G + G +EK+ E I++ TP L N F L + +
Sbjct: 75 FKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLM 134
Query: 748 VLDEA 752
+ DE
Sbjct: 135 IFDEC 139
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 369 TSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTR 428
TS R+ +AT VA G+D+ V+ Y++ ++ + + GR GRA +G L+T
Sbjct: 450 TSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA--AGSKCILVTS 506
Query: 429 K 429
K
Sbjct: 507 K 507
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 889 TSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGR 932
TS R+ +AT VA G+D+ V+ Y++ ++ + + GR
Sbjct: 450 TSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR 493
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
Length = 780
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 11/104 (10%)
Query: 320 EERDKVMVFMGRKASVSA---MSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARIC 376
EE DK+ V K++V +S ++ +++ ++G LSQE+++ + + G I
Sbjct: 589 EESDKLNV----KSAVEMYEYLSKEVFPEFKLGL-MHGRLSQEEKDRVMLEFAEGRYDIL 643
Query: 377 VATDVASRGLDVPDLTHVINYDFPSHIE-EYVHRV-GRTGRAGK 418
V+T V G+DVP +V+ + P +H++ GR GR G+
Sbjct: 644 VSTTVIEVGIDVPR-ANVMVIENPERFGLAQLHQLRGRVGRGGQ 686
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 14/104 (13%)
Query: 840 EERDKVMVFMGRKASVSA---MSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARIC 896
EE DK+ V K++V +S ++ +++ ++G LSQE+++ + + G I
Sbjct: 589 EESDKLNV----KSAVEMYEYLSKEVFPEFKLGL-MHGRLSQEEKDRVMLEFAEGRYDIL 643
Query: 897 VATDVASRGLDVPDLTHVINYDFP-----SHIEEYVHRVGRTGE 935
V+T V G+DVP +V+ + P + + + RVGR G+
Sbjct: 644 VSTTVIEVGIDVPR-ANVMVIENPERFGLAQLHQLRGRVGRGGQ 686
>pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2
Bound To Amppnp
Length = 997
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 33/180 (18%)
Query: 71 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPI------------LMSGHDMIG 118
P+ + K+ + H ++ ++EN P+P A++WP L G +
Sbjct: 2 PDSMVPVKKEWAHVVDLNHKIENFDELIPNP--ARSWPFELDTFQKEAVYHLEQGDSVFV 59
Query: 119 IAQTGTGKT-FAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG 177
A T GKT A A+ H ++ T + +P + L+ Q R+ K +
Sbjct: 60 AAHTSAGKTVVAEYAIAMAHRNMTKT----------IYTSPIKALSNQKFRDF-KETFDD 108
Query: 178 LKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLD 237
+ + G +I P + LI T L + R + ++ V FV+ DE + D
Sbjct: 109 VNIGLITGDVQINPD-------ANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVND 161
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 71/180 (39%), Gaps = 33/180 (18%)
Query: 591 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPI------------LMSGHDMIG 638
P+ + K+ + H ++ ++EN P+P A++WP L G +
Sbjct: 2 PDSMVPVKKEWAHVVDLNHKIENFDELIPNP--ARSWPFELDTFQKEAVYHLEQGDSVFV 59
Query: 639 IAQTGTGKT-FAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG 697
A T GKT A A+ H ++ T + +P + L+ Q R+ K +
Sbjct: 60 AAHTSAGKTVVAEYAIAMAHRNMTKT----------IYTSPIKALSNQKFRDF-KETFDD 108
Query: 698 LKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLD 757
+ + G ++ P + LI T L + R + ++ V FV+ DE + D
Sbjct: 109 VNIGLITGDVQINPD-------ANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVND 161
>pdb|3AXH|A Chain A, Crystal Structure Of Isomaltase In Complex With Isomaltose
pdb|3AXI|A Chain A, Crystal Structure Of Isomaltase In Complex With Maltose
Length = 589
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 26 VYKEDPEVANMTPEQVEAFRKKNNDISVSVV---TSDGQIDENPDFQIPNPVTSFKQAFQ 82
VY D E ++ +++ +F KK N+ ++ +SD DF+IPN +SFK F
Sbjct: 510 VYGYDFEFIDLDNKKLFSFTKKYNNKTLFAALNFSSDAT-----DFKIPNDDSSFKLEFG 564
Query: 83 HYPE 86
+YP+
Sbjct: 565 NYPK 568
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 546 VYKEDPEVANMTPEQVEAFRKKNNDISVSVV---TSDGQIDENPDFQIPNPVTSFKQAFQ 602
VY D E ++ +++ +F KK N+ ++ +SD DF+IPN +SFK F
Sbjct: 510 VYGYDFEFIDLDNKKLFSFTKKYNNKTLFAALNFSSDAT-----DFKIPNDDSSFKLEFG 564
Query: 603 HYPE 606
+YP+
Sbjct: 565 NYPK 568
>pdb|3A47|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3A4A|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3AJ7|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
Length = 589
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 26 VYKEDPEVANMTPEQVEAFRKKNNDISVSVV---TSDGQIDENPDFQIPNPVTSFKQAFQ 82
VY D E ++ +++ +F KK N+ ++ +SD DF+IPN +SFK F
Sbjct: 510 VYGYDFEFIDLDNKKLFSFTKKYNNKTLFAALNFSSDAT-----DFKIPNDDSSFKLEFG 564
Query: 83 HYPE 86
+YP+
Sbjct: 565 NYPK 568
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 546 VYKEDPEVANMTPEQVEAFRKKNNDISVSVV---TSDGQIDENPDFQIPNPVTSFKQAFQ 602
VY D E ++ +++ +F KK N+ ++ +SD DF+IPN +SFK F
Sbjct: 510 VYGYDFEFIDLDNKKLFSFTKKYNNKTLFAALNFSSDAT-----DFKIPNDDSSFKLEFG 564
Query: 603 HYPE 606
+YP+
Sbjct: 565 NYPK 568
>pdb|3TBK|A Chain A, Mouse Rig-I Atpase Domain
Length = 555
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 370 SGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKS 419
SG I +AT VA G+D+ + VI Y++ ++ + + GR GRA S
Sbjct: 450 SGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKXIQTRGR-GRARDS 498
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 890 SGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGR 932
SG I +AT VA G+D+ + VI Y++ ++ + + GR
Sbjct: 450 SGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKXIQTRGR 492
>pdb|2V1L|A Chain A, Structure Of The Conserved Hypothetical Protein Vc1805
From Pathogenicity Island Vpi-2 Of Vibrio Cholerae O1
Biovar Eltor Str. N16961 Shares Structural Homology With
The Human P32 Protein
Length = 148
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%)
Query: 332 KASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDL 391
K+ V A S ++ +R S D EIAL + G I TD A G P+L
Sbjct: 31 KSEVQATSKEVVMNFRDSSYSAEDGGFHPVEIALSQSSDGQWCIEYITDFAYVGNHFPEL 90
Query: 392 THVINYDF 399
+++DF
Sbjct: 91 ERCLDFDF 98
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%)
Query: 852 KASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDL 911
K+ V A S ++ +R S D EIAL + G I TD A G P+L
Sbjct: 31 KSEVQATSKEVVMNFRDSSYSAEDGGFHPVEIALSQSSDGQWCIEYITDFAYVGNHFPEL 90
Query: 912 THVINYDF 919
+++DF
Sbjct: 91 ERCLDFDF 98
>pdb|3DMQ|A Chain A, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
pdb|3DMQ|B Chain B, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
Length = 968
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/154 (18%), Positives = 63/154 (40%), Gaps = 23/154 (14%)
Query: 305 DEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGD---LSQEDR 361
D + +WL + + + KV+V + A+ + L + +++ + + + DR
Sbjct: 488 DPRVEWLXGYLTSHRSQ--KVLVICAKAATALQLEQVLREREGIRAAVFHEGXSIIERDR 545
Query: 362 EIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGE 421
A A++ + +++ S G + +H + +D P + + R+GR R G+
Sbjct: 546 AAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHXVXFDLPFNPDLLEQRIGRLDRIGQ--- 602
Query: 422 SITLMTRKDWSHAHEI---IPILEEGGHESYMIW 452
AH+I +P LE+ + W
Sbjct: 603 ------------AHDIQIHVPYLEKTAQSVLVRW 624
>pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
pdb|4GL2|B Chain B, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
Length = 699
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 351 SLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRV 410
S + ++Q +++ + +G + +AT VA GLD+ + VI Y ++ V
Sbjct: 443 SEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQAR 502
Query: 411 GRTGRAGKS 419
GR RA +S
Sbjct: 503 GR-ARADES 510
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 871 SLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRV 930
S + ++Q +++ + +G + +AT VA GLD+ + VI Y ++ V
Sbjct: 443 SEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQAR 502
Query: 931 GR 932
GR
Sbjct: 503 GR 504
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,314,792
Number of Sequences: 62578
Number of extensions: 1136736
Number of successful extensions: 3820
Number of sequences better than 100.0: 90
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3263
Number of HSP's gapped (non-prelim): 205
length of query: 936
length of database: 14,973,337
effective HSP length: 108
effective length of query: 828
effective length of database: 8,214,913
effective search space: 6801947964
effective search space used: 6801947964
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)