Query psy7557
Match_columns 936
No_of_seqs 768 out of 5509
Neff 9.5
Searched_HMMs 46136
Date Fri Aug 16 21:26:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7557.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7557hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0336|consensus 100.0 9.8E-86 2.1E-90 664.2 31.6 446 4-456 154-599 (629)
2 KOG0331|consensus 100.0 4.2E-78 9E-83 653.7 33.7 426 17-455 16-474 (519)
3 KOG0336|consensus 100.0 3.2E-77 6.9E-82 602.5 31.2 417 513-936 143-559 (629)
4 KOG0333|consensus 100.0 2.7E-72 5.8E-77 585.1 31.6 397 32-445 215-640 (673)
5 KOG0339|consensus 100.0 4.6E-72 1E-76 579.6 31.6 423 16-455 177-601 (731)
6 KOG0331|consensus 100.0 1.5E-71 3.3E-76 602.6 33.6 340 596-936 92-435 (519)
7 PTZ00110 helicase; Provisional 100.0 4.7E-70 1E-74 629.2 44.7 430 11-454 76-509 (545)
8 KOG0330|consensus 100.0 4.6E-71 1E-75 557.1 29.4 365 73-447 59-425 (476)
9 KOG0341|consensus 100.0 6.1E-72 1.3E-76 560.4 19.7 415 22-454 130-554 (610)
10 PLN00206 DEAD-box ATP-dependen 100.0 2.8E-67 6.1E-72 605.2 46.2 429 9-453 67-499 (518)
11 KOG0328|consensus 100.0 1E-67 2.2E-72 509.7 29.6 370 71-450 23-394 (400)
12 COG0513 SrmB Superfamily II DN 100.0 8.4E-66 1.8E-70 587.6 40.6 363 75-444 29-396 (513)
13 KOG0333|consensus 100.0 2.6E-66 5.6E-71 540.4 30.9 389 524-936 194-611 (673)
14 KOG0335|consensus 100.0 1.9E-66 4E-71 552.2 30.1 393 60-454 59-469 (482)
15 KOG0330|consensus 100.0 2.3E-66 4.9E-71 523.2 27.4 333 594-936 60-394 (476)
16 KOG0338|consensus 100.0 1.2E-66 2.5E-71 540.6 25.9 363 75-444 181-548 (691)
17 KOG0334|consensus 100.0 5.4E-65 1.2E-69 577.0 29.6 420 17-452 319-743 (997)
18 KOG0341|consensus 100.0 6.7E-66 1.4E-70 517.0 18.4 384 535-936 123-515 (610)
19 PTZ00110 helicase; Provisional 100.0 5.6E-63 1.2E-67 570.4 42.8 385 538-936 85-471 (545)
20 KOG0340|consensus 100.0 2E-63 4.4E-68 495.9 28.9 366 75-447 7-379 (442)
21 KOG0342|consensus 100.0 2.6E-63 5.7E-68 516.8 30.0 361 74-438 81-446 (543)
22 KOG0339|consensus 100.0 7.4E-63 1.6E-67 511.2 30.2 383 537-936 178-562 (731)
23 KOG0345|consensus 100.0 5E-62 1.1E-66 503.0 32.7 349 81-432 11-367 (567)
24 KOG0326|consensus 100.0 1.9E-63 4.2E-68 487.9 20.5 364 76-450 86-450 (459)
25 KOG0338|consensus 100.0 5.1E-63 1.1E-67 513.4 24.8 335 595-936 181-520 (691)
26 KOG0328|consensus 100.0 2.8E-62 6E-67 472.1 27.1 335 592-936 24-360 (400)
27 COG0513 SrmB Superfamily II DN 100.0 1.8E-61 3.8E-66 552.1 37.9 335 595-936 29-367 (513)
28 PRK04837 ATP-dependent RNA hel 100.0 9.2E-61 2E-65 542.3 42.1 367 74-444 7-377 (423)
29 KOG0343|consensus 100.0 6.5E-62 1.4E-66 509.6 29.6 363 74-445 68-435 (758)
30 PLN00206 DEAD-box ATP-dependen 100.0 2.2E-60 4.8E-65 547.9 44.0 386 535-936 73-462 (518)
31 PRK10590 ATP-dependent RNA hel 100.0 3.7E-60 8E-65 540.2 41.4 365 76-444 2-367 (456)
32 PRK11776 ATP-dependent RNA hel 100.0 5.8E-60 1.2E-64 541.8 40.5 358 75-443 4-363 (460)
33 PRK11634 ATP-dependent RNA hel 100.0 1.6E-59 3.5E-64 545.1 39.4 359 75-443 6-366 (629)
34 PRK04537 ATP-dependent RNA hel 100.0 3.4E-59 7.3E-64 540.4 41.0 366 75-444 9-379 (572)
35 KOG0348|consensus 100.0 2.2E-60 4.8E-65 496.7 27.2 363 72-435 133-560 (708)
36 KOG0346|consensus 100.0 1.5E-59 3.3E-64 479.9 27.5 368 75-444 19-425 (569)
37 KOG0335|consensus 100.0 1.1E-59 2.4E-64 500.5 27.0 350 585-936 64-431 (482)
38 KOG0343|consensus 100.0 4.1E-59 8.8E-64 488.6 28.8 337 594-936 68-409 (758)
39 KOG0951|consensus 100.0 1.2E-57 2.5E-62 515.7 42.2 811 93-936 304-1484(1674)
40 KOG0334|consensus 100.0 2.5E-59 5.5E-64 530.9 28.4 383 538-936 320-707 (997)
41 PRK11192 ATP-dependent RNA hel 100.0 9.6E-58 2.1E-62 520.4 41.6 361 76-442 2-365 (434)
42 KOG0340|consensus 100.0 5.5E-59 1.2E-63 464.2 26.1 335 595-936 7-348 (442)
43 KOG0342|consensus 100.0 1.3E-58 2.8E-63 481.8 29.4 335 597-935 84-423 (543)
44 KOG0345|consensus 100.0 8.8E-58 1.9E-62 471.6 31.2 333 601-936 11-351 (567)
45 PRK01297 ATP-dependent RNA hel 100.0 9.4E-57 2E-61 516.2 42.1 370 72-445 84-458 (475)
46 KOG0326|consensus 100.0 5.7E-59 1.2E-63 456.5 18.6 330 596-936 86-416 (459)
47 KOG0347|consensus 100.0 1.2E-58 2.6E-63 485.2 21.8 371 70-445 176-586 (731)
48 PRK04837 ATP-dependent RNA hel 100.0 9.9E-57 2.1E-61 509.3 38.6 338 595-936 8-349 (423)
49 KOG0952|consensus 100.0 7.3E-58 1.6E-62 512.5 27.0 751 92-863 104-1174(1230)
50 PRK10590 ATP-dependent RNA hel 100.0 2.8E-56 6.1E-61 508.3 39.8 337 596-936 2-339 (456)
51 PRK11776 ATP-dependent RNA hel 100.0 5.3E-56 1.2E-60 509.0 38.5 331 595-936 4-336 (460)
52 PRK11634 ATP-dependent RNA hel 100.0 1.9E-55 4.2E-60 511.1 39.4 332 595-936 6-339 (629)
53 PRK04537 ATP-dependent RNA hel 100.0 2.3E-55 4.9E-60 508.5 39.0 338 595-936 9-351 (572)
54 PTZ00424 helicase 45; Provisio 100.0 5.5E-55 1.2E-59 494.9 41.3 363 73-445 26-390 (401)
55 KOG0346|consensus 100.0 3.3E-56 7.1E-61 455.5 25.6 340 595-936 19-397 (569)
56 KOG0347|consensus 100.0 3.4E-57 7.3E-62 474.3 17.9 341 591-936 177-557 (731)
57 KOG0332|consensus 100.0 1.9E-55 4.1E-60 441.3 27.1 360 72-444 87-459 (477)
58 PRK11192 ATP-dependent RNA hel 100.0 3.7E-54 8.1E-59 490.9 40.1 335 596-936 2-339 (434)
59 KOG0348|consensus 100.0 1.9E-55 4.1E-60 459.8 26.6 344 592-936 133-541 (708)
60 KOG0344|consensus 100.0 7.9E-55 1.7E-59 465.0 26.0 382 66-451 123-517 (593)
61 KOG0327|consensus 100.0 1E-54 2.2E-59 441.6 24.9 369 69-449 20-390 (397)
62 PRK01297 ATP-dependent RNA hel 100.0 6.3E-53 1.4E-57 484.5 41.1 340 593-936 85-429 (475)
63 KOG0337|consensus 100.0 6.1E-54 1.3E-58 436.9 22.9 360 76-443 22-382 (529)
64 KOG4284|consensus 100.0 1.7E-53 3.7E-58 452.9 26.2 356 71-437 21-388 (980)
65 KOG0332|consensus 100.0 6.9E-53 1.5E-57 422.9 23.3 331 593-936 88-430 (477)
66 PTZ00424 helicase 45; Provisio 100.0 3.7E-51 8.1E-56 463.6 39.2 334 593-936 26-361 (401)
67 KOG0350|consensus 100.0 4.4E-52 9.6E-57 432.0 25.2 350 87-443 148-554 (620)
68 TIGR03817 DECH_helic helicase/ 100.0 4.3E-51 9.3E-56 484.3 35.7 343 83-442 21-401 (742)
69 PLN03137 ATP-dependent DNA hel 100.0 7E-50 1.5E-54 466.3 34.6 336 81-438 442-796 (1195)
70 KOG0327|consensus 100.0 1.1E-50 2.3E-55 412.4 23.5 335 590-936 21-357 (397)
71 KOG4284|consensus 100.0 5.6E-50 1.2E-54 426.1 25.7 336 590-936 20-366 (980)
72 KOG0337|consensus 100.0 4.8E-50 1E-54 408.5 18.8 333 596-936 22-355 (529)
73 TIGR03817 DECH_helic helicase/ 100.0 2.3E-48 5E-53 461.0 34.9 317 603-936 21-373 (742)
74 TIGR00614 recQ_fam ATP-depende 100.0 2.6E-48 5.6E-53 444.1 33.7 326 93-439 6-343 (470)
75 TIGR00580 mfd transcription-re 100.0 6E-47 1.3E-51 451.6 36.6 385 84-495 437-840 (926)
76 KOG0344|consensus 100.0 3.4E-48 7.3E-53 414.2 22.4 347 586-936 123-482 (593)
77 PRK11057 ATP-dependent DNA hel 100.0 6.1E-47 1.3E-51 443.5 33.7 329 87-438 13-352 (607)
78 KOG0350|consensus 100.0 1.1E-47 2.3E-52 399.3 22.8 325 605-936 146-527 (620)
79 KOG0329|consensus 100.0 3.3E-48 7.1E-53 369.1 14.9 312 75-430 42-356 (387)
80 PLN03137 ATP-dependent DNA hel 100.0 2.2E-46 4.8E-51 437.1 33.3 314 601-936 442-774 (1195)
81 PRK10689 transcription-repair 100.0 5.1E-46 1.1E-50 453.2 36.4 381 88-495 591-989 (1147)
82 PRK02362 ski2-like helicase; P 100.0 8.9E-47 1.9E-51 453.9 28.4 335 77-430 3-398 (737)
83 PRK13767 ATP-dependent helicas 100.0 8.8E-46 1.9E-50 448.2 36.2 357 83-443 18-413 (876)
84 TIGR01389 recQ ATP-dependent D 100.0 8.1E-46 1.8E-50 436.3 32.4 326 90-438 4-340 (591)
85 TIGR00614 recQ_fam ATP-depende 100.0 6.2E-45 1.3E-49 416.3 32.6 303 613-936 6-320 (470)
86 PRK00254 ski2-like helicase; P 100.0 3.3E-45 7.2E-50 439.2 31.1 336 76-430 2-389 (720)
87 PRK13767 ATP-dependent helicas 100.0 6.6E-45 1.4E-49 440.6 33.0 332 603-936 18-384 (876)
88 PRK02362 ski2-like helicase; P 100.0 2.5E-45 5.3E-50 441.4 28.7 325 597-936 3-382 (737)
89 KOG0329|consensus 100.0 4.9E-46 1.1E-50 354.2 16.0 297 596-936 43-342 (387)
90 TIGR02621 cas3_GSU0051 CRISPR- 100.0 9.4E-44 2E-48 410.7 32.0 314 94-428 12-390 (844)
91 PRK11057 ATP-dependent DNA hel 100.0 2.1E-43 4.6E-48 413.6 33.7 306 608-936 14-330 (607)
92 PRK00254 ski2-like helicase; P 100.0 8.8E-44 1.9E-48 426.9 30.5 326 596-935 2-372 (720)
93 PRK10917 ATP-dependent DNA hel 100.0 3.4E-43 7.4E-48 416.0 34.8 355 90-471 254-630 (681)
94 PRK01172 ski2-like helicase; P 100.0 1.7E-43 3.7E-48 423.1 29.0 332 77-430 3-379 (674)
95 TIGR00643 recG ATP-dependent D 100.0 1.6E-42 3.6E-47 407.9 34.0 359 87-471 225-607 (630)
96 TIGR01389 recQ ATP-dependent D 100.0 1.4E-42 3.1E-47 408.8 32.9 300 614-936 9-318 (591)
97 COG0514 RecQ Superfamily II DN 100.0 6.1E-43 1.3E-47 387.4 27.8 330 89-440 7-348 (590)
98 COG1201 Lhr Lhr-like helicases 100.0 1.6E-42 3.5E-47 398.0 30.2 356 83-446 8-380 (814)
99 TIGR02621 cas3_GSU0051 CRISPR- 100.0 3.8E-42 8.3E-47 397.4 32.2 302 614-936 12-377 (844)
100 PRK01172 ski2-like helicase; P 100.0 3E-42 6.5E-47 412.3 28.5 322 597-936 3-363 (674)
101 COG1201 Lhr Lhr-like helicases 100.0 1.3E-41 2.9E-46 390.5 27.8 325 603-935 8-347 (814)
102 PRK10689 transcription-repair 100.0 1.4E-39 3E-44 397.0 42.6 303 607-936 590-906 (1147)
103 PRK09751 putative ATP-dependen 100.0 2.2E-40 4.8E-45 404.4 31.4 304 118-426 1-382 (1490)
104 TIGR00580 mfd transcription-re 100.0 2.2E-39 4.7E-44 386.9 35.4 304 606-936 439-757 (926)
105 COG1204 Superfamily II helicas 100.0 3.7E-40 8.1E-45 385.3 26.3 334 83-428 16-407 (766)
106 PRK09751 putative ATP-dependen 100.0 9.4E-40 2E-44 399.0 29.9 294 638-936 1-371 (1490)
107 PHA02653 RNA helicase NPH-II; 100.0 2.3E-39 4.9E-44 373.8 31.0 310 101-431 167-516 (675)
108 PRK09401 reverse gyrase; Revie 100.0 5.9E-39 1.3E-43 392.3 35.3 289 87-401 69-410 (1176)
109 COG0514 RecQ Superfamily II DN 100.0 1.6E-39 3.4E-44 360.3 25.2 301 614-936 13-324 (590)
110 PRK14701 reverse gyrase; Provi 100.0 3.3E-39 7.1E-44 402.0 30.5 330 85-438 66-465 (1638)
111 PRK10917 ATP-dependent DNA hel 100.0 2.6E-38 5.6E-43 374.4 33.2 303 608-936 252-576 (681)
112 PRK12898 secA preprotein trans 100.0 2.3E-38 5E-43 358.6 30.2 319 93-430 99-587 (656)
113 COG1202 Superfamily II helicas 100.0 5.3E-39 1.2E-43 339.2 20.9 334 81-430 199-554 (830)
114 PRK09401 reverse gyrase; Revie 100.0 7.6E-38 1.6E-42 382.6 32.5 302 607-934 69-429 (1176)
115 COG1204 Superfamily II helicas 100.0 1.4E-38 3E-43 372.2 24.8 321 603-935 16-392 (766)
116 TIGR00643 recG ATP-dependent D 100.0 1.4E-37 3E-42 366.2 32.3 305 607-936 225-553 (630)
117 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.9E-37 4E-42 366.8 31.8 300 105-431 9-338 (819)
118 COG1197 Mfd Transcription-repa 100.0 4E-37 8.7E-42 357.4 32.2 385 83-494 579-982 (1139)
119 KOG0349|consensus 100.0 3.1E-38 6.7E-43 321.9 18.9 276 153-429 289-615 (725)
120 COG1111 MPH1 ERCC4-like helica 100.0 2.4E-36 5.1E-41 318.5 31.4 327 96-433 13-485 (542)
121 KOG0352|consensus 100.0 8.3E-38 1.8E-42 318.7 19.7 332 86-438 6-371 (641)
122 TIGR01054 rgy reverse gyrase. 100.0 1.4E-36 3E-41 372.2 34.4 291 86-401 66-409 (1171)
123 PRK14701 reverse gyrase; Provi 100.0 7.3E-37 1.6E-41 381.0 32.4 307 605-935 66-442 (1638)
124 PRK11664 ATP-dependent RNA hel 100.0 5.4E-37 1.2E-41 364.1 29.6 299 106-431 13-341 (812)
125 PRK09200 preprotein translocas 100.0 5.2E-37 1.1E-41 355.2 28.7 380 15-431 13-543 (790)
126 PHA02653 RNA helicase NPH-II; 100.0 8.7E-37 1.9E-41 352.4 30.2 297 620-936 166-502 (675)
127 TIGR01587 cas3_core CRISPR-ass 100.0 3.7E-37 8.1E-42 343.0 24.2 301 115-431 1-338 (358)
128 PHA02558 uvsW UvsW helicase; P 100.0 1.3E-36 2.9E-41 349.1 28.3 310 96-427 112-450 (501)
129 COG1202 Superfamily II helicas 100.0 8.6E-37 1.9E-41 322.5 21.5 319 601-935 199-537 (830)
130 KOG0349|consensus 100.0 3.5E-37 7.6E-42 314.2 17.6 263 671-936 287-602 (725)
131 TIGR03714 secA2 accessory Sec 100.0 1.4E-36 3.1E-41 347.7 24.8 320 94-431 67-539 (762)
132 KOG0351|consensus 100.0 2.4E-36 5.3E-41 354.7 27.2 330 90-439 256-602 (941)
133 COG1111 MPH1 ERCC4-like helica 100.0 1.6E-35 3.4E-40 312.3 29.6 310 616-935 13-468 (542)
134 COG1200 RecG RecG-like helicas 100.0 1.4E-35 2.9E-40 326.9 29.3 357 88-471 253-632 (677)
135 TIGR00963 secA preprotein tran 100.0 1.1E-35 2.4E-40 338.0 28.0 319 94-431 53-519 (745)
136 PHA02558 uvsW UvsW helicase; P 100.0 1E-35 2.2E-40 341.9 27.8 299 616-936 112-439 (501)
137 TIGR01587 cas3_core CRISPR-ass 100.0 9.7E-36 2.1E-40 331.6 24.9 286 635-936 1-319 (358)
138 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.3E-34 2.7E-39 342.8 31.9 286 625-936 9-324 (819)
139 KOG0952|consensus 100.0 3E-35 6.6E-40 331.1 23.7 319 612-935 104-475 (1230)
140 TIGR01054 rgy reverse gyrase. 100.0 1.8E-34 3.9E-39 353.7 32.3 292 606-922 66-410 (1171)
141 PRK12898 secA preprotein trans 100.0 1.8E-34 3.8E-39 327.1 29.7 304 614-936 100-573 (656)
142 PRK11664 ATP-dependent RNA hel 100.0 2.8E-34 6.2E-39 340.9 30.4 286 625-936 12-327 (812)
143 TIGR03158 cas3_cyano CRISPR-as 100.0 7.1E-34 1.5E-38 312.1 30.2 291 622-934 1-357 (357)
144 TIGR03158 cas3_cyano CRISPR-as 100.0 6.7E-34 1.5E-38 312.2 28.7 291 102-414 1-357 (357)
145 COG1205 Distinct helicase fami 100.0 5.7E-34 1.2E-38 338.5 29.0 337 83-429 55-422 (851)
146 KOG0351|consensus 100.0 4E-34 8.6E-39 336.1 26.0 310 607-936 253-579 (941)
147 PRK13766 Hef nuclease; Provisi 100.0 2.8E-33 6E-38 342.0 34.6 327 96-433 13-483 (773)
148 KOG0354|consensus 100.0 1.8E-33 3.8E-38 315.1 26.8 323 96-429 60-529 (746)
149 KOG0352|consensus 100.0 2.1E-34 4.5E-39 294.0 15.7 313 606-936 6-349 (641)
150 KOG0354|consensus 100.0 4.1E-33 8.8E-38 312.2 25.9 310 617-936 61-517 (746)
151 PRK09200 preprotein translocas 100.0 6.1E-33 1.3E-37 321.5 28.3 305 614-936 75-528 (790)
152 COG1205 Distinct helicase fami 100.0 1.1E-32 2.5E-37 327.4 28.9 320 605-935 57-408 (851)
153 PRK11131 ATP-dependent RNA hel 100.0 2.2E-32 4.7E-37 328.6 30.0 299 106-432 82-414 (1294)
154 PRK13766 Hef nuclease; Provisi 100.0 5.7E-32 1.2E-36 330.5 34.0 311 616-936 13-467 (773)
155 KOG0353|consensus 100.0 3.2E-33 7E-38 280.8 18.5 339 81-439 76-477 (695)
156 TIGR03714 secA2 accessory Sec 100.0 5.6E-32 1.2E-36 310.1 27.6 305 614-936 67-524 (762)
157 TIGR00963 secA preprotein tran 100.0 5.1E-32 1.1E-36 308.2 26.8 304 614-936 53-504 (745)
158 TIGR00603 rad25 DNA repair hel 100.0 1.2E-31 2.5E-36 307.7 26.3 320 98-445 255-625 (732)
159 PRK05580 primosome assembly pr 100.0 1.4E-30 2.9E-35 307.1 31.6 314 98-432 144-552 (679)
160 KOG0353|consensus 100.0 4E-31 8.6E-36 265.8 18.6 308 601-928 76-403 (695)
161 TIGR00603 rad25 DNA repair hel 100.0 1.4E-30 3.1E-35 298.8 23.3 291 618-936 255-587 (732)
162 TIGR01967 DEAH_box_HrpA ATP-de 100.0 3.3E-30 7.2E-35 311.2 26.4 314 94-432 60-407 (1283)
163 KOG0951|consensus 100.0 2.2E-30 4.7E-35 295.2 23.2 315 614-935 305-686 (1674)
164 PRK11131 ATP-dependent RNA hel 100.0 1.5E-29 3.2E-34 304.3 29.8 284 626-936 82-399 (1294)
165 PRK13104 secA preprotein trans 100.0 8.2E-30 1.8E-34 294.0 23.3 382 12-430 14-588 (896)
166 PRK05580 primosome assembly pr 100.0 2.3E-28 5.1E-33 288.2 32.6 299 618-936 144-536 (679)
167 KOG0947|consensus 100.0 7.6E-29 1.6E-33 276.3 22.5 339 93-457 293-750 (1248)
168 PRK12904 preprotein translocas 100.0 9.8E-29 2.1E-33 285.2 23.9 380 14-430 15-574 (830)
169 PRK09694 helicase Cas3; Provis 100.0 3.5E-28 7.6E-33 287.6 28.8 308 617-936 285-662 (878)
170 PRK12899 secA preprotein trans 100.0 1.4E-28 3.1E-33 282.7 23.9 196 15-236 16-228 (970)
171 cd00268 DEADc DEAD-box helicas 100.0 2.1E-28 4.5E-33 249.8 22.7 198 81-282 4-202 (203)
172 PRK09694 helicase Cas3; Provis 100.0 3.3E-28 7.1E-33 287.9 26.7 311 97-418 285-664 (878)
173 TIGR00595 priA primosomal prot 100.0 4.6E-28 1E-32 275.5 26.4 293 117-430 1-382 (505)
174 cd00268 DEADc DEAD-box helicas 100.0 3.7E-28 8E-33 248.0 22.7 198 601-802 4-202 (203)
175 COG1061 SSL2 DNA or RNA helica 100.0 3.8E-28 8.2E-33 273.2 22.4 293 98-416 36-376 (442)
176 PRK12906 secA preprotein trans 100.0 5.4E-28 1.2E-32 278.0 23.7 379 15-430 15-554 (796)
177 KOG0948|consensus 100.0 3E-28 6.5E-33 265.0 19.8 308 98-429 129-539 (1041)
178 COG1061 SSL2 DNA or RNA helica 100.0 9.1E-28 2E-32 270.1 24.1 293 618-935 36-375 (442)
179 COG1200 RecG RecG-like helicas 100.0 2.2E-27 4.8E-32 262.3 26.4 304 607-936 252-578 (677)
180 COG4581 Superfamily II RNA hel 100.0 1.1E-27 2.5E-32 279.3 24.0 317 90-429 112-537 (1041)
181 TIGR01967 DEAH_box_HrpA ATP-de 100.0 2E-27 4.3E-32 287.4 26.8 299 614-936 60-392 (1283)
182 KOG0947|consensus 100.0 1.1E-27 2.4E-32 267.0 21.6 300 610-935 290-707 (1248)
183 PRK04914 ATP-dependent helicas 100.0 1.4E-26 3.1E-31 275.5 29.6 332 98-443 152-617 (956)
184 TIGR00595 priA primosomal prot 99.9 2.3E-26 5.1E-31 261.5 25.3 280 637-936 1-368 (505)
185 KOG0950|consensus 99.9 6.6E-27 1.4E-31 263.6 19.5 333 90-439 215-621 (1008)
186 COG4581 Superfamily II RNA hel 99.9 2.8E-26 6.1E-31 267.7 23.8 305 609-936 111-522 (1041)
187 PRK13107 preprotein translocas 99.9 1.7E-26 3.8E-31 265.5 20.6 382 14-431 16-593 (908)
188 PRK13104 secA preprotein trans 99.9 1.3E-25 2.8E-30 259.3 26.2 306 614-935 79-573 (896)
189 KOG0948|consensus 99.9 1.3E-26 2.8E-31 252.3 16.0 300 614-935 126-523 (1041)
190 PRK04914 ATP-dependent helicas 99.9 2.1E-25 4.7E-30 265.6 27.1 306 618-936 152-590 (956)
191 PRK11448 hsdR type I restricti 99.9 6E-25 1.3E-29 268.0 27.1 308 98-418 413-802 (1123)
192 COG1197 Mfd Transcription-repa 99.9 3.2E-23 6.9E-28 242.1 38.7 298 612-936 589-900 (1139)
193 PRK12904 preprotein translocas 99.9 1.2E-24 2.6E-29 251.5 26.0 303 614-935 78-559 (830)
194 PRK12899 secA preprotein trans 99.9 1.7E-24 3.8E-29 249.2 27.0 148 598-756 64-228 (970)
195 COG4098 comFA Superfamily II D 99.9 4E-24 8.6E-29 214.2 25.8 301 98-427 97-414 (441)
196 PRK11448 hsdR type I restricti 99.9 2.4E-24 5.2E-29 262.7 28.8 306 618-936 413-800 (1123)
197 COG4098 comFA Superfamily II D 99.9 1.3E-23 2.9E-28 210.5 25.2 289 618-936 97-401 (441)
198 KOG0950|consensus 99.9 3.9E-25 8.5E-30 249.4 15.9 314 607-936 212-596 (1008)
199 PRK12906 secA preprotein trans 99.9 6E-24 1.3E-28 244.8 23.5 304 614-936 77-540 (796)
200 PF00270 DEAD: DEAD/DEAH box h 99.9 2.3E-24 4.9E-29 213.3 17.3 164 100-270 1-168 (169)
201 PF00270 DEAD: DEAD/DEAH box h 99.9 3.7E-24 8E-29 211.8 17.1 164 620-790 1-168 (169)
202 PRK13107 preprotein translocas 99.9 2.8E-22 6E-27 231.1 22.9 303 614-935 79-577 (908)
203 COG1643 HrpA HrpA-like helicas 99.9 1.1E-21 2.3E-26 228.8 27.3 305 104-431 56-389 (845)
204 COG1203 CRISPR-associated heli 99.9 2.6E-22 5.7E-27 239.5 21.9 324 98-430 195-551 (733)
205 PRK12900 secA preprotein trans 99.9 4.4E-22 9.6E-27 229.9 20.8 129 300-430 576-712 (1025)
206 COG1203 CRISPR-associated heli 99.9 1.8E-21 3.9E-26 232.3 21.8 311 618-936 195-535 (733)
207 KOG0922|consensus 99.9 9.1E-21 2E-25 207.7 25.0 305 104-432 57-393 (674)
208 COG1110 Reverse gyrase [DNA re 99.9 3E-20 6.5E-25 211.0 26.6 286 87-400 71-416 (1187)
209 TIGR00631 uvrb excinuclease AB 99.9 3.7E-20 8E-25 215.7 27.7 134 305-439 425-563 (655)
210 PRK12326 preprotein translocas 99.8 2.4E-19 5.1E-24 202.0 25.8 376 15-430 16-548 (764)
211 PRK05298 excinuclease ABC subu 99.8 1.4E-19 3.1E-24 212.9 24.6 144 306-450 430-587 (652)
212 KOG0949|consensus 99.8 7.3E-20 1.6E-24 205.4 20.3 159 615-785 509-672 (1330)
213 KOG0949|consensus 99.8 1.2E-19 2.7E-24 203.6 21.8 158 98-266 511-673 (1330)
214 PLN03142 Probable chromatin-re 99.8 1.7E-19 3.7E-24 216.0 24.4 320 98-430 169-600 (1033)
215 COG1643 HrpA HrpA-like helicas 99.8 3.4E-19 7.4E-24 208.0 25.5 288 626-935 58-374 (845)
216 KOG0923|consensus 99.8 3.5E-19 7.7E-24 192.5 21.8 306 100-430 267-607 (902)
217 KOG0924|consensus 99.8 4.1E-19 8.8E-24 192.2 21.6 308 100-430 358-698 (1042)
218 COG1198 PriA Primosomal protei 99.8 4.4E-19 9.5E-24 204.0 23.3 316 98-433 198-607 (730)
219 TIGR00631 uvrb excinuclease AB 99.8 2E-18 4.3E-23 201.3 28.4 112 825-936 425-541 (655)
220 TIGR01407 dinG_rel DnaQ family 99.8 3.4E-18 7.4E-23 208.9 30.0 332 84-429 232-814 (850)
221 PRK13103 secA preprotein trans 99.8 1.3E-18 2.8E-23 201.1 22.4 380 14-430 16-592 (913)
222 COG0556 UvrB Helicase subunit 99.8 2.6E-18 5.7E-23 182.5 22.8 167 254-429 386-557 (663)
223 PLN03142 Probable chromatin-re 99.8 3.9E-18 8.4E-23 204.5 26.7 306 618-936 169-584 (1033)
224 COG1110 Reverse gyrase [DNA re 99.8 3.2E-18 6.8E-23 194.8 24.1 286 607-920 71-416 (1187)
225 TIGR00348 hsdR type I site-spe 99.8 4.5E-18 9.8E-23 201.2 26.5 300 99-416 239-634 (667)
226 KOG0926|consensus 99.8 1.4E-18 2.9E-23 191.4 19.1 302 107-429 265-704 (1172)
227 COG4096 HsdR Type I site-speci 99.8 7.4E-19 1.6E-23 197.2 17.3 297 97-416 164-525 (875)
228 COG4096 HsdR Type I site-speci 99.8 5.5E-18 1.2E-22 190.3 23.8 297 617-936 164-525 (875)
229 TIGR01407 dinG_rel DnaQ family 99.8 1E-17 2.2E-22 204.8 28.2 305 603-920 231-755 (850)
230 TIGR00348 hsdR type I site-spe 99.8 6.5E-18 1.4E-22 199.8 25.6 300 618-935 238-633 (667)
231 KOG4150|consensus 99.8 2E-18 4.3E-23 183.1 18.4 330 89-429 277-640 (1034)
232 KOG0920|consensus 99.8 7.6E-18 1.7E-22 195.5 24.8 316 100-432 175-547 (924)
233 smart00487 DEXDc DEAD-like hel 99.8 4.6E-18 9.9E-23 173.0 20.6 187 93-286 3-192 (201)
234 KOG0922|consensus 99.8 1.6E-17 3.4E-22 182.5 25.4 289 624-935 57-377 (674)
235 smart00487 DEXDc DEAD-like hel 99.8 5.8E-18 1.3E-22 172.3 20.8 187 613-806 3-192 (201)
236 COG1198 PriA Primosomal protei 99.8 6.4E-18 1.4E-22 194.5 23.2 300 617-936 197-590 (730)
237 PRK05298 excinuclease ABC subu 99.8 6.6E-17 1.4E-21 190.5 28.0 112 825-936 429-545 (652)
238 KOG4150|consensus 99.8 9.4E-18 2E-22 178.0 17.4 334 590-936 260-627 (1034)
239 PRK12903 secA preprotein trans 99.8 5.4E-17 1.2E-21 185.5 24.1 376 17-430 15-540 (925)
240 COG0556 UvrB Helicase subunit 99.8 6.6E-17 1.4E-21 172.0 23.1 154 774-935 386-544 (663)
241 KOG1123|consensus 99.8 5.2E-18 1.1E-22 177.8 13.1 293 617-936 301-634 (776)
242 PRK12900 secA preprotein trans 99.7 2.9E-17 6.3E-22 190.5 19.5 115 820-936 576-698 (1025)
243 CHL00122 secA preprotein trans 99.7 2.5E-16 5.3E-21 181.6 23.9 337 15-389 11-491 (870)
244 KOG0920|consensus 99.7 3.3E-16 7.2E-21 182.0 24.7 301 620-936 175-532 (924)
245 KOG0923|consensus 99.7 2.1E-16 4.6E-21 171.3 20.4 297 620-936 267-594 (902)
246 cd00079 HELICc Helicase superf 99.7 9.9E-17 2.1E-21 151.1 14.6 121 305-425 11-131 (131)
247 KOG0924|consensus 99.7 4.4E-16 9.5E-21 169.0 20.2 294 620-936 358-685 (1042)
248 PRK12326 preprotein translocas 99.7 2.7E-15 5.9E-20 169.6 25.5 302 614-935 75-533 (764)
249 PRK07246 bifunctional ATP-depe 99.7 4.1E-15 8.8E-20 179.0 27.6 289 91-400 239-724 (820)
250 PRK12902 secA preprotein trans 99.7 2.9E-15 6.4E-20 172.2 24.8 277 94-389 82-506 (939)
251 KOG1123|consensus 99.7 3.8E-16 8.3E-21 163.9 13.6 307 97-430 301-654 (776)
252 KOG0926|consensus 99.7 9.8E-16 2.1E-20 169.2 17.1 292 625-935 263-691 (1172)
253 PF00271 Helicase_C: Helicase 99.7 5.3E-17 1.2E-21 137.0 5.4 77 341-417 2-78 (78)
254 PRK07246 bifunctional ATP-depe 99.7 2.6E-14 5.6E-19 172.1 28.1 290 610-920 238-724 (820)
255 PF00271 Helicase_C: Helicase 99.6 3.8E-16 8.2E-21 131.8 8.3 76 861-936 2-77 (78)
256 cd00079 HELICc Helicase superf 99.6 4.6E-15 9.9E-20 139.7 13.8 112 825-936 11-122 (131)
257 TIGR03117 cas_csf4 CRISPR-asso 99.6 4E-13 8.8E-18 154.2 31.0 80 320-401 468-561 (636)
258 COG4889 Predicted helicase [Ge 99.6 1.4E-15 3.1E-20 168.9 10.0 330 86-426 149-585 (1518)
259 PRK13103 secA preprotein trans 99.6 3.6E-14 7.9E-19 164.7 20.8 302 614-935 79-577 (913)
260 KOG0925|consensus 99.6 3.2E-14 6.9E-19 149.4 18.2 322 82-430 31-388 (699)
261 PRK08074 bifunctional ATP-depe 99.6 1.8E-13 4E-18 168.1 27.6 109 321-429 751-893 (928)
262 COG4889 Predicted helicase [Ge 99.6 7.1E-15 1.5E-19 163.5 13.5 309 616-935 159-571 (1518)
263 cd00046 DEXDc DEAD-like helica 99.6 2.6E-14 5.6E-19 136.4 15.6 144 634-784 1-144 (144)
264 cd00046 DEXDc DEAD-like helica 99.6 2.8E-14 6E-19 136.3 15.8 144 114-264 1-144 (144)
265 KOG0385|consensus 99.6 8.4E-14 1.8E-18 154.1 20.8 316 98-430 167-600 (971)
266 KOG0953|consensus 99.6 2.2E-14 4.8E-19 153.3 14.4 263 116-427 194-475 (700)
267 PRK12903 secA preprotein trans 99.6 3.5E-13 7.7E-18 154.7 23.2 302 614-935 75-525 (925)
268 TIGR03117 cas_csf4 CRISPR-asso 99.5 2.2E-12 4.8E-17 148.2 29.1 79 841-921 469-561 (636)
269 PRK08074 bifunctional ATP-depe 99.5 1E-12 2.3E-17 161.5 27.1 80 841-920 751-834 (928)
270 KOG0385|consensus 99.5 6.5E-13 1.4E-17 147.2 21.6 305 618-935 167-583 (971)
271 PF04851 ResIII: Type III rest 99.5 6.3E-14 1.4E-18 140.5 12.0 151 618-785 3-183 (184)
272 PF04851 ResIII: Type III rest 99.5 7.7E-14 1.7E-18 139.9 12.5 151 98-265 3-183 (184)
273 PRK12901 secA preprotein trans 99.5 3.6E-13 7.8E-18 156.7 19.3 129 300-430 606-742 (1112)
274 KOG0953|consensus 99.5 1.8E-13 3.8E-18 146.5 14.7 255 633-936 191-461 (700)
275 smart00490 HELICc helicase sup 99.5 4E-14 8.7E-19 120.9 7.4 81 337-417 2-82 (82)
276 CHL00122 secA preprotein trans 99.5 2.3E-12 5E-17 149.2 22.0 277 614-909 73-491 (870)
277 smart00490 HELICc helicase sup 99.5 1.8E-13 3.9E-18 116.8 8.6 80 857-936 2-81 (82)
278 PRK11747 dinG ATP-dependent DN 99.4 3.9E-11 8.5E-16 143.0 28.9 117 310-429 522-674 (697)
279 TIGR02562 cas3_yersinia CRISPR 99.4 1.2E-11 2.7E-16 144.9 20.5 316 609-935 399-878 (1110)
280 TIGR02562 cas3_yersinia CRISPR 99.4 9.2E-12 2E-16 146.0 18.8 311 98-419 408-882 (1110)
281 KOG0925|consensus 99.4 3.4E-11 7.4E-16 127.0 21.0 305 603-936 32-375 (699)
282 PRK14873 primosome assembly pr 99.4 2.7E-11 5.9E-16 141.4 20.7 282 119-429 166-539 (665)
283 KOG0387|consensus 99.4 5.9E-11 1.3E-15 132.7 22.0 128 305-432 529-661 (923)
284 PRK12902 secA preprotein trans 99.3 6.8E-11 1.5E-15 136.8 22.3 277 614-909 82-506 (939)
285 KOG0387|consensus 99.3 8.8E-11 1.9E-15 131.3 22.2 304 617-935 204-642 (923)
286 PRK11747 dinG ATP-dependent DN 99.3 3.3E-10 7.2E-15 135.1 28.6 88 830-920 522-615 (697)
287 KOG0384|consensus 99.3 9.5E-12 2.1E-16 144.9 12.8 318 97-430 369-812 (1373)
288 COG1199 DinG Rad3-related DNA 99.3 1.4E-10 3.1E-15 139.7 23.4 105 321-428 478-616 (654)
289 KOG0390|consensus 99.3 2.1E-10 4.6E-15 132.0 21.5 100 330-429 603-707 (776)
290 PRK14873 primosome assembly pr 99.3 1.4E-10 3E-15 135.6 20.2 134 642-792 169-311 (665)
291 KOG1000|consensus 99.3 3.2E-09 6.9E-14 112.7 28.1 333 96-445 196-624 (689)
292 PF06862 DUF1253: Protein of u 99.2 2.5E-09 5.3E-14 117.1 25.4 289 149-438 36-424 (442)
293 KOG0384|consensus 99.2 5.7E-11 1.2E-15 138.6 12.8 305 617-935 369-795 (1373)
294 COG1199 DinG Rad3-related DNA 99.2 9.8E-10 2.1E-14 132.5 23.7 77 841-920 478-558 (654)
295 TIGR00604 rad3 DNA repair heli 99.2 4.6E-09 9.9E-14 126.6 27.4 73 95-173 7-83 (705)
296 KOG0390|consensus 99.2 3.7E-09 8.1E-14 121.9 25.0 307 617-935 237-691 (776)
297 KOG0389|consensus 99.2 1.4E-09 3E-14 121.8 19.7 127 305-431 760-890 (941)
298 PF02399 Herpes_ori_bp: Origin 99.1 3.1E-09 6.7E-14 122.1 20.5 287 116-429 52-388 (824)
299 PF02399 Herpes_ori_bp: Origin 99.1 3.7E-09 8E-14 121.5 20.6 274 635-933 51-373 (824)
300 KOG0392|consensus 99.1 2E-09 4.4E-14 125.4 18.2 326 98-431 975-1456(1549)
301 KOG1000|consensus 99.1 1.7E-08 3.7E-13 107.3 23.1 300 617-933 197-591 (689)
302 COG0653 SecA Preprotein transl 99.1 1.3E-09 2.8E-14 126.1 16.1 318 94-430 77-546 (822)
303 PF06862 DUF1253: Protein of u 99.1 2.6E-08 5.7E-13 109.1 24.6 261 669-930 36-390 (442)
304 TIGR00604 rad3 DNA repair heli 99.1 4.7E-08 1E-12 117.9 28.0 74 614-693 6-83 (705)
305 KOG0389|consensus 99.0 1E-08 2.2E-13 115.0 19.3 108 826-933 761-876 (941)
306 PF07652 Flavi_DEAD: Flaviviru 99.0 1E-09 2.2E-14 99.7 8.6 136 632-788 3-140 (148)
307 KOG0392|consensus 99.0 9.3E-09 2E-13 120.0 18.3 309 619-935 976-1438(1549)
308 PF07652 Flavi_DEAD: Flaviviru 99.0 7.4E-10 1.6E-14 100.6 7.4 136 112-268 3-140 (148)
309 PRK12901 secA preprotein trans 99.0 1E-08 2.2E-13 120.4 18.4 114 820-935 606-727 (1112)
310 smart00488 DEXDc2 DEAD-like he 98.9 1.4E-08 3.1E-13 108.1 13.8 76 614-693 5-84 (289)
311 smart00489 DEXDc3 DEAD-like he 98.9 1.4E-08 3.1E-13 108.1 13.8 76 614-693 5-84 (289)
312 smart00489 DEXDc3 DEAD-like he 98.9 1.4E-08 3E-13 108.2 12.8 73 98-173 8-84 (289)
313 smart00488 DEXDc2 DEAD-like he 98.9 1.4E-08 3E-13 108.2 12.8 73 98-173 8-84 (289)
314 KOG0386|consensus 98.8 1.6E-08 3.5E-13 116.2 10.9 123 305-427 709-834 (1157)
315 KOG0386|consensus 98.8 2.8E-08 6E-13 114.4 12.1 111 825-935 709-822 (1157)
316 KOG2340|consensus 98.8 1.5E-07 3.2E-12 101.3 15.0 340 97-438 215-677 (698)
317 PF00176 SNF2_N: SNF2 family N 98.8 7.7E-08 1.7E-12 104.7 13.5 145 633-785 25-173 (299)
318 PF07517 SecA_DEAD: SecA DEAD- 98.7 9.4E-08 2E-12 98.7 12.8 190 14-236 11-210 (266)
319 PF00176 SNF2_N: SNF2 family N 98.7 8.9E-08 1.9E-12 104.2 13.2 145 113-265 25-173 (299)
320 COG0610 Type I site-specific r 98.7 7E-07 1.5E-11 109.7 21.6 286 114-416 274-636 (962)
321 COG0610 Type I site-specific r 98.7 8.4E-07 1.8E-11 109.0 21.9 138 634-785 274-414 (962)
322 KOG2340|consensus 98.6 5.1E-07 1.1E-11 97.2 14.1 317 616-933 214-648 (698)
323 KOG1002|consensus 98.6 3.2E-06 6.9E-11 90.2 19.7 90 843-932 639-736 (791)
324 KOG4439|consensus 98.6 7.3E-07 1.6E-11 99.1 14.7 77 856-932 760-839 (901)
325 KOG1002|consensus 98.6 5.1E-06 1.1E-10 88.7 20.1 126 306-431 620-751 (791)
326 PF07517 SecA_DEAD: SecA DEAD- 98.5 1.2E-06 2.7E-11 90.5 12.4 130 613-756 73-210 (266)
327 KOG0921|consensus 98.5 7.8E-07 1.7E-11 101.2 11.0 307 111-429 391-774 (1282)
328 KOG4439|consensus 98.4 1.9E-06 4.1E-11 96.0 13.3 120 304-423 727-850 (901)
329 TIGR00596 rad1 DNA repair prot 98.4 3.5E-06 7.5E-11 100.6 16.6 67 199-265 7-73 (814)
330 COG0653 SecA Preprotein transl 98.4 6.8E-06 1.5E-10 95.8 18.0 306 614-935 77-531 (822)
331 KOG0388|consensus 98.3 9.4E-06 2E-10 90.3 14.5 111 825-935 1027-1138(1185)
332 COG0553 HepA Superfamily II DN 98.2 2E-05 4.4E-10 99.4 17.5 110 826-935 692-806 (866)
333 TIGR00596 rad1 DNA repair prot 98.2 7.8E-06 1.7E-10 97.7 12.7 68 718-785 6-73 (814)
334 KOG0921|consensus 98.2 1.3E-05 2.9E-10 91.5 12.7 297 628-935 388-761 (1282)
335 PRK15483 type III restriction- 98.2 1.9E-05 4.1E-10 94.4 14.4 142 634-786 60-240 (986)
336 PF13086 AAA_11: AAA domain; P 98.1 1.1E-05 2.4E-10 84.1 10.3 74 618-692 1-75 (236)
337 PRK15483 type III restriction- 98.1 2.5E-05 5.3E-10 93.4 13.9 73 372-444 501-583 (986)
338 PF13086 AAA_11: AAA domain; P 98.1 9.6E-06 2.1E-10 84.6 9.3 74 98-172 1-75 (236)
339 PF02562 PhoH: PhoH-like prote 97.9 8.9E-05 1.9E-09 73.6 11.9 143 98-261 4-153 (205)
340 PF13604 AAA_30: AAA domain; P 97.9 3.7E-05 8E-10 77.2 8.1 120 98-263 1-130 (196)
341 COG3587 Restriction endonuclea 97.9 0.0005 1.1E-08 79.2 17.7 74 371-444 482-568 (985)
342 PF02562 PhoH: PhoH-like prote 97.9 0.0001 2.2E-09 73.2 10.8 145 618-783 4-155 (205)
343 KOG1015|consensus 97.8 0.001 2.2E-08 77.0 18.7 109 828-936 1128-1262(1567)
344 COG3587 Restriction endonuclea 97.8 0.00046 1E-08 79.5 15.8 46 891-936 482-527 (985)
345 PF13604 AAA_30: AAA domain; P 97.8 9.6E-05 2.1E-09 74.2 8.7 120 618-783 1-130 (196)
346 KOG1802|consensus 97.6 0.00031 6.7E-09 78.3 10.3 85 610-705 402-486 (935)
347 PF13872 AAA_34: P-loop contai 97.6 0.0005 1.1E-08 71.5 11.2 161 618-791 37-227 (303)
348 PF13307 Helicase_C_2: Helicas 97.6 8.2E-05 1.8E-09 72.6 5.3 107 321-429 8-150 (167)
349 PF13872 AAA_34: P-loop contai 97.5 0.00089 1.9E-08 69.6 12.1 161 98-271 37-227 (303)
350 PF09848 DUF2075: Uncharacteri 97.5 0.0021 4.6E-08 71.2 15.9 107 116-250 4-117 (352)
351 PF09848 DUF2075: Uncharacteri 97.5 0.0027 5.8E-08 70.4 16.6 108 635-770 3-117 (352)
352 TIGR00376 DNA helicase, putati 97.5 0.00063 1.4E-08 80.6 11.9 67 617-692 156-223 (637)
353 KOG1803|consensus 97.5 0.0005 1.1E-08 76.6 9.9 65 98-171 185-250 (649)
354 TIGR00376 DNA helicase, putati 97.5 0.00071 1.5E-08 80.2 11.9 66 98-172 157-223 (637)
355 PF12340 DUF3638: Protein of u 97.5 0.00084 1.8E-08 67.3 10.5 133 615-757 21-186 (229)
356 KOG0391|consensus 97.4 0.00071 1.5E-08 79.8 9.9 109 825-933 1259-1375(1958)
357 PF13245 AAA_19: Part of AAA d 97.3 0.00049 1.1E-08 56.8 6.0 60 106-170 2-62 (76)
358 PF14617 CMS1: U3-containing 9 97.3 0.0004 8.7E-09 71.0 6.7 87 148-234 124-212 (252)
359 PRK10536 hypothetical protein; 97.3 0.0037 8.1E-08 64.0 13.1 143 94-260 55-209 (262)
360 PRK10536 hypothetical protein; 97.3 0.0045 9.7E-08 63.4 13.2 144 614-781 55-210 (262)
361 PF13245 AAA_19: Part of AAA d 97.3 0.00064 1.4E-08 56.1 5.8 60 626-690 2-62 (76)
362 PF12340 DUF3638: Protein of u 97.3 0.004 8.6E-08 62.5 12.5 131 98-237 23-186 (229)
363 KOG1803|consensus 97.2 0.0015 3.2E-08 72.9 10.3 65 618-691 185-250 (649)
364 KOG1802|consensus 97.2 0.0018 3.9E-08 72.5 10.7 84 90-184 402-485 (935)
365 PF13307 Helicase_C_2: Helicas 97.2 0.00042 9.1E-09 67.6 5.1 77 842-920 9-91 (167)
366 KOG0388|consensus 97.2 0.00075 1.6E-08 75.7 7.4 127 304-430 1026-1155(1185)
367 PF14617 CMS1: U3-containing 9 97.2 0.00077 1.7E-08 69.0 6.9 86 668-753 124-211 (252)
368 KOG1132|consensus 97.2 0.0028 6.1E-08 73.7 11.5 79 618-696 21-136 (945)
369 COG0553 HepA Superfamily II DN 97.0 0.003 6.5E-08 79.8 11.5 125 306-430 692-823 (866)
370 TIGR01448 recD_rel helicase, p 97.0 0.0051 1.1E-07 74.3 12.4 131 94-261 320-450 (720)
371 KOG0391|consensus 97.0 0.004 8.6E-08 73.8 10.6 122 305-430 1259-1388(1958)
372 PRK10875 recD exonuclease V su 96.9 0.0085 1.8E-07 70.3 13.4 136 100-261 154-299 (615)
373 PRK10875 recD exonuclease V su 96.9 0.0049 1.1E-07 72.3 11.1 141 620-783 154-301 (615)
374 TIGR01447 recD exodeoxyribonuc 96.9 0.0069 1.5E-07 71.0 11.8 140 100-261 147-293 (586)
375 TIGR01448 recD_rel helicase, p 96.9 0.0093 2E-07 72.0 13.2 134 613-783 319-452 (720)
376 KOG1132|consensus 96.8 0.0055 1.2E-07 71.3 10.4 83 98-181 21-140 (945)
377 PRK13889 conjugal transfer rel 96.8 0.011 2.5E-07 72.5 13.1 64 93-166 342-406 (988)
378 TIGR01447 recD exodeoxyribonuc 96.7 0.012 2.7E-07 68.9 12.5 142 621-783 148-295 (586)
379 TIGR02768 TraA_Ti Ti-type conj 96.6 0.02 4.3E-07 69.5 13.6 61 98-167 352-413 (744)
380 PRK13889 conjugal transfer rel 96.6 0.023 5E-07 70.0 14.0 128 612-783 341-470 (988)
381 TIGR02768 TraA_Ti Ti-type conj 96.6 0.027 5.8E-07 68.4 14.2 124 614-781 349-474 (744)
382 COG1875 NYN ribonuclease and A 96.6 0.0069 1.5E-07 63.8 7.8 141 614-781 224-385 (436)
383 PRK14974 cell division protein 96.5 0.019 4.2E-07 62.2 10.9 55 222-276 221-276 (336)
384 PF00580 UvrD-helicase: UvrD/R 96.5 0.0061 1.3E-07 66.6 7.3 68 99-173 1-68 (315)
385 COG1875 NYN ribonuclease and A 96.4 0.014 2.9E-07 61.7 9.0 141 94-261 224-385 (436)
386 COG3421 Uncharacterized protei 96.4 0.066 1.4E-06 59.9 14.4 148 638-803 2-182 (812)
387 PRK04296 thymidine kinase; Pro 96.4 0.005 1.1E-07 61.5 5.5 108 115-263 4-114 (190)
388 PRK06526 transposase; Provisio 96.4 0.017 3.8E-07 60.2 9.7 22 110-131 95-116 (254)
389 KOG1805|consensus 96.4 0.012 2.6E-07 69.3 8.9 134 83-236 658-809 (1100)
390 PF13401 AAA_22: AAA domain; P 96.3 0.027 5.8E-07 52.4 9.9 18 113-130 4-21 (131)
391 KOG1015|consensus 96.3 0.0077 1.7E-07 70.1 6.9 119 306-424 1126-1270(1567)
392 PRK06526 transposase; Provisio 96.3 0.018 4E-07 60.0 9.2 22 630-651 95-116 (254)
393 PF00580 UvrD-helicase: UvrD/R 96.2 0.0094 2E-07 65.1 7.3 68 619-693 1-68 (315)
394 PF13401 AAA_22: AAA domain; P 96.2 0.0068 1.5E-07 56.5 5.1 19 633-651 4-22 (131)
395 TIGR02760 TraI_TIGR conjugativ 96.2 0.28 6.1E-06 65.8 21.5 238 98-372 429-686 (1960)
396 PRK08181 transposase; Validate 96.2 0.066 1.4E-06 56.2 12.6 58 620-687 89-150 (269)
397 PRK08181 transposase; Validate 96.1 0.033 7.1E-07 58.5 10.2 58 100-167 89-150 (269)
398 PRK14974 cell division protein 96.1 0.044 9.6E-07 59.4 11.0 55 742-796 221-276 (336)
399 PF05970 PIF1: PIF1-like helic 96.1 0.0091 2E-07 66.3 6.0 60 98-166 1-66 (364)
400 cd00009 AAA The AAA+ (ATPases 96.1 0.04 8.6E-07 52.1 9.8 18 633-650 19-36 (151)
401 smart00492 HELICc3 helicase su 96.0 0.025 5.4E-07 53.1 7.9 50 352-401 27-79 (141)
402 PRK13826 Dtr system oriT relax 96.0 0.073 1.6E-06 66.1 13.7 133 87-263 371-505 (1102)
403 PF05970 PIF1: PIF1-like helic 95.9 0.022 4.8E-07 63.3 8.4 60 618-686 1-66 (364)
404 cd00009 AAA The AAA+ (ATPases 95.9 0.051 1.1E-06 51.3 9.9 18 113-130 19-36 (151)
405 KOG1805|consensus 95.9 0.027 5.8E-07 66.5 8.8 135 603-757 658-810 (1100)
406 PRK04296 thymidine kinase; Pro 95.7 0.047 1E-06 54.5 9.0 36 634-678 3-38 (190)
407 smart00382 AAA ATPases associa 95.6 0.017 3.6E-07 54.3 5.2 19 633-651 2-20 (148)
408 smart00491 HELICc2 helicase su 95.6 0.032 7E-07 52.5 6.9 43 359-401 31-80 (142)
409 TIGR02760 TraI_TIGR conjugativ 95.6 0.83 1.8E-05 61.5 21.9 238 618-892 429-686 (1960)
410 smart00382 AAA ATPases associa 95.5 0.015 3.3E-07 54.5 4.5 19 113-131 2-20 (148)
411 PRK13826 Dtr system oriT relax 95.5 0.16 3.4E-06 63.2 14.1 135 605-783 369-505 (1102)
412 cd01120 RecA-like_NTPases RecA 95.5 0.078 1.7E-06 51.3 9.4 38 116-162 2-39 (165)
413 PRK07952 DNA replication prote 95.3 0.14 3E-06 53.0 10.9 107 634-787 100-208 (244)
414 PRK12377 putative replication 95.3 0.13 2.7E-06 53.5 10.4 48 633-690 101-148 (248)
415 PRK08116 hypothetical protein; 95.2 0.22 4.7E-06 52.7 12.3 47 114-170 115-161 (268)
416 PRK08727 hypothetical protein; 95.2 0.06 1.3E-06 55.7 7.8 16 114-129 42-57 (233)
417 PRK11889 flhF flagellar biosyn 95.2 0.17 3.6E-06 55.3 11.2 129 114-276 242-375 (436)
418 PRK06893 DNA replication initi 95.1 0.043 9.4E-07 56.6 6.6 47 221-267 89-137 (229)
419 PRK11889 flhF flagellar biosyn 95.1 0.25 5.5E-06 54.0 12.2 129 633-796 241-375 (436)
420 cd01120 RecA-like_NTPases RecA 95.0 0.12 2.5E-06 50.0 9.0 38 636-682 2-39 (165)
421 PRK07952 DNA replication prote 95.0 0.27 5.9E-06 50.9 11.9 47 221-267 160-208 (244)
422 PRK12377 putative replication 94.9 0.18 3.9E-06 52.3 10.2 47 114-170 102-148 (248)
423 smart00492 HELICc3 helicase su 94.9 0.099 2.1E-06 49.1 7.6 51 870-920 25-78 (141)
424 KOG0989|consensus 94.8 0.076 1.6E-06 55.0 7.1 45 739-784 125-169 (346)
425 PRK05642 DNA replication initi 94.8 0.1 2.2E-06 54.0 8.3 46 221-266 95-141 (234)
426 COG2805 PilT Tfp pilus assembl 94.7 0.11 2.3E-06 53.8 7.9 52 589-660 100-151 (353)
427 PRK06835 DNA replication prote 94.7 0.39 8.4E-06 52.2 12.8 46 632-687 182-227 (329)
428 PRK08084 DNA replication initi 94.7 0.07 1.5E-06 55.3 6.8 18 113-130 45-62 (235)
429 PHA02533 17 large terminase pr 94.7 0.14 3.1E-06 59.4 9.9 147 618-784 59-210 (534)
430 COG2805 PilT Tfp pilus assembl 94.7 0.087 1.9E-06 54.4 7.1 50 69-139 100-150 (353)
431 PRK12723 flagellar biosynthesi 94.7 0.16 3.5E-06 56.2 9.9 55 221-275 252-309 (388)
432 PRK12723 flagellar biosynthesi 94.6 0.36 7.8E-06 53.5 12.4 130 633-795 174-309 (388)
433 PRK08727 hypothetical protein; 94.6 0.15 3.3E-06 52.7 8.9 16 634-649 42-57 (233)
434 KOG1001|consensus 94.6 0.12 2.7E-06 61.0 9.1 141 115-266 154-294 (674)
435 PF03354 Terminase_1: Phage Te 94.6 0.099 2.1E-06 60.5 8.3 149 101-261 1-160 (477)
436 TIGR03420 DnaA_homol_Hda DnaA 94.5 0.12 2.6E-06 53.3 8.1 20 112-131 37-56 (226)
437 PRK08116 hypothetical protein; 94.5 0.44 9.6E-06 50.3 12.3 47 634-690 115-161 (268)
438 PHA02533 17 large terminase pr 94.5 0.18 4E-06 58.4 10.0 122 98-237 59-183 (534)
439 COG3421 Uncharacterized protei 94.4 0.13 2.7E-06 57.8 8.0 77 198-275 80-175 (812)
440 PF00448 SRP54: SRP54-type pro 94.4 0.14 3.1E-06 51.2 7.8 54 222-275 82-136 (196)
441 PRK06921 hypothetical protein; 94.4 0.42 9E-06 50.4 11.7 46 112-166 116-161 (266)
442 PRK14722 flhF flagellar biosyn 94.4 0.4 8.6E-06 52.7 11.8 68 724-795 200-269 (374)
443 PF05621 TniB: Bacterial TniB 94.3 0.12 2.6E-06 54.3 7.3 114 114-254 62-178 (302)
444 PF13871 Helicase_C_4: Helicas 94.3 0.081 1.8E-06 55.1 6.0 82 363-444 52-145 (278)
445 PRK14722 flhF flagellar biosyn 94.3 0.19 4.1E-06 55.2 9.2 56 221-276 213-270 (374)
446 smart00491 HELICc2 helicase su 94.2 0.11 2.4E-06 48.8 6.3 43 878-920 30-79 (142)
447 PF03354 Terminase_1: Phage Te 94.2 0.14 2.9E-06 59.4 8.4 150 621-782 1-161 (477)
448 PRK13894 conjugal transfer ATP 94.2 0.099 2.1E-06 56.5 6.8 67 87-162 123-190 (319)
449 cd01124 KaiC KaiC is a circadi 94.1 0.18 3.8E-06 50.2 8.0 48 116-173 2-49 (187)
450 PRK05642 DNA replication initi 94.1 0.18 3.9E-06 52.2 8.2 44 742-786 96-141 (234)
451 PRK06921 hypothetical protein; 94.1 0.47 1E-05 50.0 11.4 45 633-686 117-161 (266)
452 PRK09183 transposase/IS protei 94.1 0.71 1.5E-05 48.5 12.7 47 630-686 99-145 (259)
453 COG1484 DnaC DNA replication p 94.1 0.063 1.4E-06 56.1 4.8 93 91-232 76-176 (254)
454 KOG1131|consensus 94.0 0.55 1.2E-05 51.9 11.7 59 96-159 14-76 (755)
455 PRK06835 DNA replication prote 93.9 0.66 1.4E-05 50.4 12.3 46 112-167 182-227 (329)
456 PTZ00112 origin recognition co 93.9 0.45 9.8E-06 56.8 11.5 17 222-238 868-884 (1164)
457 PRK06893 DNA replication initi 93.9 0.087 1.9E-06 54.4 5.3 47 741-787 89-137 (229)
458 KOG1001|consensus 93.8 0.24 5.2E-06 58.7 9.5 85 844-928 541-627 (674)
459 KOG0989|consensus 93.8 0.11 2.5E-06 53.7 5.8 43 220-263 126-168 (346)
460 TIGR03420 DnaA_homol_Hda DnaA 93.8 0.21 4.5E-06 51.5 8.0 20 632-651 37-56 (226)
461 KOG0701|consensus 93.8 0.039 8.4E-07 69.9 2.9 92 844-935 294-397 (1606)
462 PRK00149 dnaA chromosomal repl 93.7 0.29 6.2E-06 56.3 9.8 49 114-170 149-197 (450)
463 PTZ00112 origin recognition co 93.6 0.58 1.3E-05 56.0 11.8 37 403-439 487-530 (1164)
464 PRK13833 conjugal transfer pro 93.6 0.18 3.9E-06 54.4 7.3 65 89-162 121-186 (323)
465 PRK09183 transposase/IS protei 93.6 0.38 8.1E-06 50.6 9.5 22 110-131 99-120 (259)
466 PRK06731 flhF flagellar biosyn 93.6 0.71 1.5E-05 48.5 11.5 131 112-276 74-209 (270)
467 PRK12422 chromosomal replicati 93.5 0.3 6.6E-06 55.5 9.4 50 222-271 201-252 (445)
468 TIGR00064 ftsY signal recognit 93.5 0.8 1.7E-05 48.5 12.0 54 223-276 154-214 (272)
469 PRK08903 DnaA regulatory inact 93.5 0.25 5.4E-06 51.0 8.0 18 632-649 41-58 (227)
470 PRK08903 DnaA regulatory inact 93.5 0.26 5.7E-06 50.8 8.1 43 223-266 90-133 (227)
471 PRK08084 DNA replication initi 93.4 0.31 6.8E-06 50.5 8.6 18 633-650 45-62 (235)
472 PRK14087 dnaA chromosomal repl 93.4 0.19 4.1E-06 57.3 7.5 110 634-788 142-253 (450)
473 PRK11331 5-methylcytosine-spec 93.3 0.28 6.2E-06 54.7 8.4 33 99-131 180-212 (459)
474 cd01124 KaiC KaiC is a circadi 93.3 0.22 4.9E-06 49.5 7.1 48 636-693 2-49 (187)
475 PRK11054 helD DNA helicase IV; 93.3 0.28 6.1E-06 58.9 8.9 70 97-173 195-264 (684)
476 PF00004 AAA: ATPase family as 93.2 0.8 1.7E-05 42.2 10.3 17 223-239 58-74 (132)
477 TIGR00362 DnaA chromosomal rep 93.2 0.21 4.5E-06 56.7 7.3 17 114-130 137-153 (405)
478 KOG0701|consensus 93.1 0.036 7.8E-07 70.2 1.2 94 324-417 294-399 (1606)
479 COG4962 CpaF Flp pilus assembl 93.1 0.15 3.3E-06 54.0 5.6 60 95-164 154-214 (355)
480 PRK10919 ATP-dependent DNA hel 93.1 0.17 3.7E-06 61.0 6.8 69 98-173 2-70 (672)
481 PRK13894 conjugal transfer ATP 93.0 0.22 4.7E-06 53.9 6.9 66 608-682 124-190 (319)
482 TIGR02881 spore_V_K stage V sp 92.9 0.54 1.2E-05 49.6 9.6 19 114-132 43-61 (261)
483 PRK14087 dnaA chromosomal repl 92.9 0.29 6.4E-06 55.8 8.0 110 114-268 142-253 (450)
484 PF00004 AAA: ATPase family as 92.9 0.79 1.7E-05 42.3 9.8 17 743-759 58-74 (132)
485 PF00308 Bac_DnaA: Bacterial d 92.9 0.14 3E-06 52.4 4.8 48 221-268 95-144 (219)
486 cd01122 GP4d_helicase GP4d_hel 92.8 0.28 6.2E-06 52.1 7.5 41 630-678 27-67 (271)
487 PRK00149 dnaA chromosomal repl 92.8 0.67 1.5E-05 53.3 10.9 48 634-689 149-196 (450)
488 COG1444 Predicted P-loop ATPas 92.8 2.3 5.1E-05 50.5 15.1 148 90-265 206-357 (758)
489 PF13173 AAA_14: AAA domain 92.7 0.88 1.9E-05 42.0 9.7 38 223-263 61-98 (128)
490 PRK06731 flhF flagellar biosyn 92.7 1.3 2.8E-05 46.6 11.9 130 632-796 74-209 (270)
491 PF00308 Bac_DnaA: Bacterial d 92.7 0.25 5.3E-06 50.6 6.5 107 635-788 36-144 (219)
492 PRK14086 dnaA chromosomal repl 92.7 0.29 6.2E-06 57.0 7.5 48 741-788 375-424 (617)
493 TIGR02782 TrbB_P P-type conjug 92.6 0.39 8.5E-06 51.5 8.1 66 88-162 108-174 (299)
494 TIGR00064 ftsY signal recognit 92.6 1.2 2.6E-05 47.2 11.6 55 742-796 153-214 (272)
495 TIGR01547 phage_term_2 phage t 92.5 0.35 7.5E-06 54.7 8.0 133 116-266 4-142 (396)
496 PF13173 AAA_14: AAA domain 92.5 0.86 1.9E-05 42.1 9.3 38 743-783 61-98 (128)
497 PRK13833 conjugal transfer pro 92.5 0.33 7.1E-06 52.4 7.2 63 611-682 123-186 (323)
498 PRK14088 dnaA chromosomal repl 92.5 0.88 1.9E-05 51.9 11.1 49 743-791 194-244 (440)
499 PRK14086 dnaA chromosomal repl 92.5 0.31 6.8E-06 56.7 7.5 48 221-268 375-424 (617)
500 PRK10919 ATP-dependent DNA hel 92.5 0.24 5.1E-06 59.8 6.9 69 618-693 2-70 (672)
No 1
>KOG0336|consensus
Probab=100.00 E-value=9.8e-86 Score=664.16 Aligned_cols=446 Identities=52% Similarity=0.846 Sum_probs=423.2
Q ss_pred hhcccchHhhhhcccCCccccccCcCCccccCCCHHHHHHHHhhCCCceEEeecCCCccCCCCCCCCCCcccChHHhhcC
Q psy7557 4 LMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQH 83 (936)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~f~~~~~~ 83 (936)
+.+-+-+.++.+|.++||+.|+||++++++++|+.++++.||+++.++++++... ....++|+|+.+|+++|+-
T Consensus 154 ~~~~~l~~e~~kW~~lpPi~knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K~------gekrpIPnP~ctFddAFq~ 227 (629)
T KOG0336|consen 154 IREARLKDEKFKWAKLPPIKKNFYKESNETSNLSKEQLQEWRKENFNITCDDLKE------GEKRPIPNPVCTFDDAFQC 227 (629)
T ss_pred HHHHHhhhhhcccccCCchhhhhhhcCchhccCCHHHHHHHHHcCCcEEeccccc------CCcccCCCCcCcHHHHHhh
Confidence 3344456677899999999999999999999999999999999999999986542 2345799999999999999
Q ss_pred CHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHH
Q psy7557 84 YPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELA 163 (936)
Q Consensus 84 ~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La 163 (936)
.|++++++++.||.+|||||++|||.+++|.|++++|+||+|||++|++|.+.++..++.......+|.+|+++|||+||
T Consensus 228 ~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLa 307 (629)
T KOG0336|consen 228 YPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELA 307 (629)
T ss_pred hHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888777778899999999999999
Q ss_pred HHHHHHHHhccCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHH
Q psy7557 164 TQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQ 243 (936)
Q Consensus 164 ~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~ 243 (936)
.|+.-++.++.+.+.+.+|+|||.....+...++.|.+|+++||++|.++...+.+++..+.|||+||||+|+|+||+++
T Consensus 308 lqie~e~~kysyng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpq 387 (629)
T KOG0336|consen 308 LQIEGEVKKYSYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQ 387 (629)
T ss_pred HHHHhHHhHhhhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhccCCCC
Q psy7557 244 INKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERD 323 (936)
Q Consensus 244 ~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~ 323 (936)
+++|+-.++|++|+++.|||||+.++.++..|+.+|+.+.++..++.....++|.+++..+.+|...+..++..+ ....
T Consensus 388 IrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~m-s~nd 466 (629)
T KOG0336|consen 388 IRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANM-SSND 466 (629)
T ss_pred HHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhc-CCCc
Confidence 999999999999999999999999999999999999999999999999999999998888889988877777777 6788
Q ss_pred cEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEecCCCCc
Q psy7557 324 KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHI 403 (936)
Q Consensus 324 ~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~ 403 (936)
++||||.++..|+.|+..|.-.|+.+..+||+-.|.+|+..+++|++|+++||||||+++||+|+|+|++|+|||+|.++
T Consensus 467 KvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nI 546 (629)
T KOG0336|consen 467 KVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNI 546 (629)
T ss_pred eEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHhhcCCccchhhhhcc
Q psy7557 404 EEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEGGHESYMIWRRDS 456 (936)
Q Consensus 404 ~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 456 (936)
+.|+||+||+||+|+.|.+++|++..|+..+.+|+++|++++|++|....++.
T Consensus 547 eeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL~~mA 599 (629)
T KOG0336|consen 547 EEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVPDELVRMA 599 (629)
T ss_pred HHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999998765544
No 2
>KOG0331|consensus
Probab=100.00 E-value=4.2e-78 Score=653.67 Aligned_cols=426 Identities=43% Similarity=0.730 Sum_probs=385.4
Q ss_pred ccCCccccccCcCCccccCCCHHHHHHHHhhCCCceEEeecCCCccCCCCCCCCCCcccC--------------------
Q psy7557 17 AREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTS-------------------- 76 (936)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~-------------------- 76 (936)
..+.++.+++|.+.+........+.+.+++++. +++.+.. ++|.|+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~v~~~~-----------~~p~p~~~~~~~~~~~~~~~~~~~~~~~ 83 (519)
T KOG0331|consen 16 LDLSPFDKNFYKEHPSVKKRGSAEVERKRKKNE-ITVKGGD-----------SVPKPVKSFEESGFPAKVLEEIPKLSRS 83 (519)
T ss_pred cccCcccccccccccccccccccccccccCcce-eeccCCC-----------CCCCCccchhcccCCccccccccccccc
Confidence 467889999999998888888877777765543 3333221 23333333
Q ss_pred ---------hHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCC
Q psy7557 77 ---------FKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISE 147 (936)
Q Consensus 77 ---------f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~ 147 (936)
|.+ +++++++...++..||..|||||.++||.+++|+|++++|.||||||++|++|++.++.........
T Consensus 84 ~~~~~~~~~f~~-~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~ 162 (519)
T KOG0331|consen 84 SGESDSSAAFQE-LGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSR 162 (519)
T ss_pred cccCCcchhhhc-ccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccC
Confidence 333 4677788888999999999999999999999999999999999999999999999999864333445
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHhcc-CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceE
Q psy7557 148 RAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSF 226 (936)
Q Consensus 148 ~~~~~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~ 226 (936)
..+|++|||+||||||.|+.+.+.+|+ ..++++.|+|||.+...|...+.+|++|+|||||||.++++.+.++++++.|
T Consensus 163 ~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~y 242 (519)
T KOG0331|consen 163 GDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTY 242 (519)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeE
Confidence 679999999999999999999999985 4578899999999999999999999999999999999999999999999999
Q ss_pred EEEccchhhhcCCCHHHHHHHHhhc-CCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCC-CcccCCceEEEEEEeCc
Q psy7557 227 VVLDEADRMLDLGFEPQINKTSIYI-NPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSL-DLAATHTVTQKIIILDE 304 (936)
Q Consensus 227 lViDEah~l~~~~~~~~~~~i~~~~-~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~ 304 (936)
+|+||||+|+++||+++++.|+..+ ++.+|++++|||||..++.++..|+.+|+.+.++.. .....+.+.|.+..++.
T Consensus 243 lVLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~ 322 (519)
T KOG0331|consen 243 LVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDE 322 (519)
T ss_pred EEeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCH
Confidence 9999999999999999999999999 677799999999999999999999999999999976 67788899999999999
Q ss_pred hhhHHHHHHHHHhcc-CCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccc
Q psy7557 305 DEKKDWLMEFFDNMD-EERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 383 (936)
Q Consensus 305 ~~k~~~l~~~l~~~~-~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~ 383 (936)
..|...|..+|.... ...+++||||+|++.|+.++..|...++++.++||+++|.+|..+++.|++|+..||||||+++
T Consensus 323 ~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAa 402 (519)
T KOG0331|consen 323 TAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAA 402 (519)
T ss_pred HHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEccccc
Confidence 999999999998874 5677999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHhhcCCccchhhhhc
Q psy7557 384 RGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEGGHESYMIWRRD 455 (936)
Q Consensus 384 ~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 455 (936)
||+|+|+|++|||||+|.++++|+||+|||||+|+.|.|++|++..+...+..+++.++++++.++......
T Consensus 403 RGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~~ 474 (519)
T KOG0331|consen 403 RGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLEY 474 (519)
T ss_pred ccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998765433
No 3
>KOG0336|consensus
Probab=100.00 E-value=3.2e-77 Score=602.50 Aligned_cols=417 Identities=52% Similarity=0.842 Sum_probs=394.2
Q ss_pred CCCCCCccHHHHHhhccHHHhhhhcccCccccCCccCChhhhCCCHHHHHHHHhhcCCceeeeecCCCCcCCCCCCCCCC
Q psy7557 513 RHIDPEPTMEELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPN 592 (936)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 592 (936)
.+..+...+|....-.-+.++.+|.+.+|+.++||++..+...|+++++++|++++..++..... +....++|+
T Consensus 143 ae~~pl~~we~~~~~~l~~e~~kW~~lpPi~knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K------~gekrpIPn 216 (629)
T KOG0336|consen 143 AEPEPLIDWESIREARLKDEKFKWAKLPPIKKNFYKESNETSNLSKEQLQEWRKENFNITCDDLK------EGEKRPIPN 216 (629)
T ss_pred CCCCccccHHHHHHHHhhhhhcccccCCchhhhhhhcCchhccCCHHHHHHHHHcCCcEEecccc------cCCcccCCC
Confidence 34445557887777777788899999999999999999999999999999999999988877443 233457999
Q ss_pred CcCChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCE
Q psy7557 593 PVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPS 672 (936)
Q Consensus 593 ~~~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~ 672 (936)
|+.+|+++|.-++++++++++.||.+|||||+||||.+++|.|++++|.||+|||++|++|.+.|+..++.......+|.
T Consensus 217 P~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~ 296 (629)
T KOG0336|consen 217 PVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPG 296 (629)
T ss_pred CcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEEEecCHHHHHHHHHHHHhccCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEccc
Q psy7557 673 VLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEA 752 (936)
Q Consensus 673 ~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEa 752 (936)
+|+++||||||.|+.-.+.++.+.+.+.+|+|||.+...+...++.+.+|+++||++|.++...+.+++..+.|+|+|||
T Consensus 297 ~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEA 376 (629)
T KOG0336|consen 297 VLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEA 376 (629)
T ss_pred eEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhccCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHH
Q psy7557 753 DRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLM 832 (936)
Q Consensus 753 h~l~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 832 (936)
|+|+++||.+++++|+--++|++|+++.|||||..++.++..|+.+|+.+.++..++...+.+.|.+++..+.+|...+.
T Consensus 377 DrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~ 456 (629)
T KOG0336|consen 377 DRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQ 456 (629)
T ss_pred hhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888889998888
Q ss_pred HHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCC
Q psy7557 833 EFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLT 912 (936)
Q Consensus 833 ~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~ 912 (936)
.+...+ +...++||||.++-.|+.|+..|.-.|+.+-.+||+-.|.+|+.+++.|++|+++||||||+++||+|+|++.
T Consensus 457 ~f~~~m-s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiT 535 (629)
T KOG0336|consen 457 FFVANM-SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDIT 535 (629)
T ss_pred HHHHhc-CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcc
Confidence 888877 6678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCChhhhHhhhhhccCC
Q psy7557 913 HVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 913 ~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
||+|||+|.++++|+||+||+||+
T Consensus 536 HV~NyDFP~nIeeYVHRvGrtGRa 559 (629)
T KOG0336|consen 536 HVYNYDFPRNIEEYVHRVGRTGRA 559 (629)
T ss_pred eeeccCCCccHHHHHHHhcccccC
Confidence 999999999999999999999996
No 4
>KOG0333|consensus
Probab=100.00 E-value=2.7e-72 Score=585.13 Aligned_cols=397 Identities=41% Similarity=0.621 Sum_probs=363.8
Q ss_pred cccCCCHHHHHHHHhhCCCceEEeecCCCccCCCCCCCCCCcccChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHh
Q psy7557 32 EVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILM 111 (936)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~ 111 (936)
....|++.+|..|+...+ +++.+ -.+|+|+.+|++ .+++.++++.+.+.||..|+|||.+|||..+
T Consensus 215 ~l~Em~~rdwri~redyn-is~kg------------~~lpnplrnwEE-~~~P~e~l~~I~~~~y~eptpIqR~aipl~l 280 (673)
T KOG0333|consen 215 VLAEMTERDWRIFREDYN-ISIKG------------GRLPNPLRNWEE-SGFPLELLSVIKKPGYKEPTPIQRQAIPLGL 280 (673)
T ss_pred hHHhcCCccceeeeccee-eeecC------------CCCCccccChhh-cCCCHHHHHHHHhcCCCCCchHHHhhccchh
Confidence 455677777777776554 44432 368999999999 4899999999999999999999999999999
Q ss_pred cCCcEEEEecCCCCcchhchHHHHHHhhcCCC--C-CCCCCCCEEEEEcCcHHHHHHHHHHHHhcc-CCCCEEEEEeCCc
Q psy7557 112 SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTT--P-ISERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGK 187 (936)
Q Consensus 112 ~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~--~-~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~ 187 (936)
+.+|+|++|.||||||++|++|++..+...+. . .....||.++||+|||+||+||.++-.+|+ +.+++++.+.||.
T Consensus 281 Q~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~ 360 (673)
T KOG0333|consen 281 QNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGL 360 (673)
T ss_pred ccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEeccc
Confidence 99999999999999999999999988755431 1 123579999999999999999999999984 6799999999999
Q ss_pred cchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHHHhhcCC--------------
Q psy7557 188 EIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINP-------------- 253 (936)
Q Consensus 188 ~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~-------------- 253 (936)
...++--++..||+|+||||++|.+.|.+..+.++++.++|+||||+|+|+||++++..++.+++.
T Consensus 361 s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~ 440 (673)
T KOG0333|consen 361 SFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEE 440 (673)
T ss_pred chhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHH
Confidence 999998899999999999999999999999999999999999999999999999999999998863
Q ss_pred -----------CCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhccCCC
Q psy7557 254 -----------NRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEER 322 (936)
Q Consensus 254 -----------~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~ 322 (936)
-+|+++||||+|+.+..+++.|+.+|+.+.++... .....+.|.++.++.++|...|.+++.+. ..
T Consensus 441 ~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~g-k~~~rveQ~v~m~~ed~k~kkL~eil~~~--~~ 517 (673)
T KOG0333|consen 441 RVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAG-KPTPRVEQKVEMVSEDEKRKKLIEILESN--FD 517 (673)
T ss_pred HHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCC-CCccchheEEEEecchHHHHHHHHHHHhC--CC
Confidence 16999999999999999999999999999999877 44667999999999999999999999985 67
Q ss_pred CcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEecCCCC
Q psy7557 323 DKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSH 402 (936)
Q Consensus 323 ~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s 402 (936)
+++|||+|+++.|+.+|+.|...+++++.+||+.+|++|+.+++.|++|..+||||||+++||||||+|++|||||++++
T Consensus 518 ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaks 597 (673)
T KOG0333|consen 518 PPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKS 597 (673)
T ss_pred CCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHhhcC
Q psy7557 403 IEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEGG 445 (936)
Q Consensus 403 ~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~ 445 (936)
+++|+||||||||+|+.|.|++|+++.|...+.+|.+.+.++-
T Consensus 598 ieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~es~ 640 (673)
T KOG0333|consen 598 IEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQALRESV 640 (673)
T ss_pred HHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999888554
No 5
>KOG0339|consensus
Probab=100.00 E-value=4.6e-72 Score=579.61 Aligned_cols=423 Identities=37% Similarity=0.605 Sum_probs=395.0
Q ss_pred cccCCccccccCcCCccccCCCHHHHHHHHhhCCCceEEeecCCCccCCCCCCCCCCcccChHHhhcCCHHHHHHHHhCC
Q psy7557 16 WAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLS 95 (936)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~f~~~~~~~~~l~~~l~~~g 95 (936)
..++++|.++||.++++++.++..+.-.++..++ +.+. ++..|+|+++|++ |+++..|+.++.+..
T Consensus 177 ~i~y~p~~kdfy~e~esI~gl~~~d~~~~r~~Ln-lrv~------------g~s~~rpvtsfeh-~gfDkqLm~airk~E 242 (731)
T KOG0339|consen 177 EIDYEPFNKDFYEEHESIEGLTKMDVIDLRLTLN-LRVS------------GSSPPRPVTSFEH-FGFDKQLMTAIRKSE 242 (731)
T ss_pred hccccccccccccChhhhhccccccchhhHhhhc-ceec------------cCCCCCCcchhhh-cCchHHHHHHHhhhh
Confidence 3478899999999999999999999988887775 4443 3578999999998 799999999999999
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhc-c
Q psy7557 96 FTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI-D 174 (936)
Q Consensus 96 ~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~-~ 174 (936)
|++|||+|.+++|.+++|+|++.+|-||||||.+|++|++.|++.+.. ...+.+|..||+|||||||.|++.++++| .
T Consensus 243 y~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~e-L~~g~gPi~vilvPTrela~Qi~~eaKkf~K 321 (731)
T KOG0339|consen 243 YEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPE-LKPGEGPIGVILVPTRELASQIFSEAKKFGK 321 (731)
T ss_pred cccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhh-hcCCCCCeEEEEeccHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999987653 23478999999999999999999999999 4
Q ss_pred CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHHHhhcCCC
Q psy7557 175 YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPN 254 (936)
Q Consensus 175 ~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~ 254 (936)
..|++++++|||.+.++|...++.|+.|||||||||++++.-+..++.++.||||||||+|+++||+++++.|...++++
T Consensus 322 ~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpd 401 (731)
T KOG0339|consen 322 AYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPD 401 (731)
T ss_pred hccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCc-hhhHHHHHHHHHhccCCCCcEEEEeCchH
Q psy7557 255 RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDE-DEKKDWLMEFFDNMDEERDKVMVFMGRKA 333 (936)
Q Consensus 255 ~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~iVF~~~~~ 333 (936)
+|+++||||++..++.+++.++.+|+.+..+... .....+.|.+.++.. ..|..||..-|..+ ...+++|||+..+.
T Consensus 402 rQtllFsaTf~~kIe~lard~L~dpVrvVqg~vg-ean~dITQ~V~V~~s~~~Kl~wl~~~L~~f-~S~gkvlifVTKk~ 479 (731)
T KOG0339|consen 402 RQTLLFSATFKKKIEKLARDILSDPVRVVQGEVG-EANEDITQTVSVCPSEEKKLNWLLRHLVEF-SSEGKVLIFVTKKA 479 (731)
T ss_pred ceEEEeeccchHHHHHHHHHHhcCCeeEEEeehh-ccccchhheeeeccCcHHHHHHHHHHhhhh-ccCCcEEEEEeccC
Confidence 9999999999999999999999999999988665 456778998877765 56888998888776 45689999999999
Q ss_pred HHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCc
Q psy7557 334 SVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRT 413 (936)
Q Consensus 334 ~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRa 413 (936)
.++.++..|...++++..+||+|.|.+|++++..|+.+...||||||+++||+|||++..|||||+.++++.|.||+||+
T Consensus 480 ~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrt 559 (731)
T KOG0339|consen 480 DAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRT 559 (731)
T ss_pred CHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeEEEEecccChhhHHhHHHHHhhcCCccchhhhhc
Q psy7557 414 GRAGKSGESITLMTRKDWSHAHEIIPILEEGGHESYMIWRRD 455 (936)
Q Consensus 414 gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 455 (936)
||+|..|.+++++++.|..++..|++.|+.++|.+|..|+..
T Consensus 560 gRag~kGvayTlvTeKDa~fAG~LVnnLe~agQnVP~~l~dl 601 (731)
T KOG0339|consen 560 GRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDELMDL 601 (731)
T ss_pred ccccccceeeEEechhhHHHhhHHHHHHhhccccCChHHHHH
Confidence 999999999999999999999999999999999999887643
No 6
>KOG0331|consensus
Probab=100.00 E-value=1.5e-71 Score=602.60 Aligned_cols=340 Identities=44% Similarity=0.794 Sum_probs=320.2
Q ss_pred ChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEE
Q psy7557 596 SFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLV 675 (936)
Q Consensus 596 ~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~li 675 (936)
.|.+ +++++++...|+..||..|||||.++||.++.|+|++++|.|||||||+|++|++.++...........+|++||
T Consensus 92 ~f~~-~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLV 170 (519)
T KOG0331|consen 92 AFQE-LGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLV 170 (519)
T ss_pred hhhc-ccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEE
Confidence 4555 678899999999999999999999999999999999999999999999999999999986434445577999999
Q ss_pred EecCHHHHHHHHHHHHhcc-CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccch
Q psy7557 676 MAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADR 754 (936)
Q Consensus 676 l~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~ 754 (936)
|+||||||.|+.+.+..++ ..+++.+|+|||.+...|...+.++++|+||||+|+.+++..+.+.++++.|+|+||||+
T Consensus 171 L~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADr 250 (519)
T KOG0331|consen 171 LAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADR 250 (519)
T ss_pred EcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHh
Confidence 9999999999999999995 456889999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCHHHHHHHhhhc-CCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCC-CcccCCceEEEEEEcCcchhHHHHH
Q psy7557 755 MLDLGFEPQINKTSIYI-NPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSL-DLAATHTVTQKIIILDEDEKKDWLM 832 (936)
Q Consensus 755 l~~~~~~~~~~~i~~~~-~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~k~~~l~ 832 (936)
|+++||+++++.|...+ ++.+|++++|||||.+++.++..|+.+|+.+.++.. .....+.+.|.+..++...|...|.
T Consensus 251 MldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~ 330 (519)
T KOG0331|consen 251 MLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLG 330 (519)
T ss_pred hhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHH
Confidence 99999999999999999 677799999999999999999999999999999876 6778889999999999999999999
Q ss_pred HHHHhcc-CCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCC
Q psy7557 833 EFFDNMD-EERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDL 911 (936)
Q Consensus 833 ~~l~~~~-~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v 911 (936)
.++..+. ...+++||||+|++.|++++..|...++++.++||+++|.+|+.+++.|++|+..||||||+++||+|+|+|
T Consensus 331 ~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV 410 (519)
T KOG0331|consen 331 KLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDV 410 (519)
T ss_pred HHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccc
Confidence 9999885 456799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEccCCCChhhhHhhhhhccCC
Q psy7557 912 THVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 912 ~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
++|||||+|.++++|+||+|||||+
T Consensus 411 ~lVInydfP~~vEdYVHRiGRTGRa 435 (519)
T KOG0331|consen 411 DLVINYDFPNNVEDYVHRIGRTGRA 435 (519)
T ss_pred cEEEeCCCCCCHHHHHhhcCccccC
Confidence 9999999999999999999999994
No 7
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=4.7e-70 Score=629.19 Aligned_cols=430 Identities=43% Similarity=0.723 Sum_probs=390.6
Q ss_pred Hhhhhcc--cCCccccccCcCCccccCCCHHHHHHHHhhCCCceEEeecCCCccCCCCCCCCCCcccChHHhhcCCHHHH
Q psy7557 11 KERDKWA--REPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEIL 88 (936)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~f~~~~~~~~~l~ 88 (936)
...-+|. .++++.|++|.++++++.+++++++.+++++. +++.. +.++|.|+.+|++ +++++.++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~-----------g~~~p~p~~~f~~-~~l~~~l~ 142 (545)
T PTZ00110 76 LQPIDWKSINLVPFEKNFYKEHPEVSALSSKEVDEIRKEKE-ITIIA-----------GENVPKPVVSFEY-TSFPDYIL 142 (545)
T ss_pred cCCCCCccccccchhhhcccCChhhhcCCHHHHHHHHHhcC-cEEec-----------CCCCCcccCCHhh-cCCCHHHH
Confidence 3345564 57899999999999999999999999998764 44321 1367999999998 58999999
Q ss_pred HHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHH
Q psy7557 89 RQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIER 168 (936)
Q Consensus 89 ~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~ 168 (936)
+.|.+.||.+|||+|.++||.+++|+|++++||||||||++|++|++.++..+.. .....+|.+|||+||||||.|+.+
T Consensus 143 ~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~-~~~~~gp~~LIL~PTreLa~Qi~~ 221 (545)
T PTZ00110 143 KSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPL-LRYGDGPIVLVLAPTRELAEQIRE 221 (545)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhccc-ccCCCCcEEEEECChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988865422 122457899999999999999999
Q ss_pred HHHhcc-CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHH
Q psy7557 169 EVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT 247 (936)
Q Consensus 169 ~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i 247 (936)
.+++|. ..++++.+++||.+...+...+..+++|+|+||++|.+++.++...++++++|||||||+|++++|.+++.++
T Consensus 222 ~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~i 301 (545)
T PTZ00110 222 QCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKI 301 (545)
T ss_pred HHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHH
Confidence 999985 4578999999999999998899999999999999999999998889999999999999999999999999999
Q ss_pred HhhcCCCCcEEEEEeccchHHHHHHHHhcC-CCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhccCCCCcEE
Q psy7557 248 SIYINPNRQTVMTSATWNKDVQRVAKKYMV-NPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVM 326 (936)
Q Consensus 248 ~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~i 326 (936)
+..+++++|+++||||+|..++.+++.++. +|+.+.++.........+.+.+..+...+|...|..++........++|
T Consensus 302 l~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~L 381 (545)
T PTZ00110 302 VSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKIL 381 (545)
T ss_pred HHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEE
Confidence 999999999999999999999999998886 6888888776656667788999888888899999988887655678999
Q ss_pred EEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEecCCCCcccc
Q psy7557 327 VFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEY 406 (936)
Q Consensus 327 VF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y 406 (936)
|||++++.|+.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||++++||||+|+|++|||||+|.++++|
T Consensus 382 IF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~y 461 (545)
T PTZ00110 382 IFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDY 461 (545)
T ss_pred EEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcccCCCceeEEEEecccChhhHHhHHHHHhhcCCccchhhhh
Q psy7557 407 VHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEGGHESYMIWRR 454 (936)
Q Consensus 407 ~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 454 (936)
+||+|||||+|+.|.|++|+++++...+.+++++|+++++++|.....
T Consensus 462 vqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~ 509 (545)
T PTZ00110 462 VHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQPVPPELEK 509 (545)
T ss_pred HHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHccCCCCHHHHH
Confidence 999999999999999999999999999999999999999999975443
No 8
>KOG0330|consensus
Probab=100.00 E-value=4.6e-71 Score=557.11 Aligned_cols=365 Identities=36% Similarity=0.557 Sum_probs=344.1
Q ss_pred cccChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCE
Q psy7557 73 PVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPS 152 (936)
Q Consensus 73 p~~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~ 152 (936)
...+|.+ +++.|++++++..+||+.||+||+++||.++.|+|+|+.|.||||||.+|++|++.+++.++ ..+.
T Consensus 59 ~~~sf~d-Lgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p------~~~~ 131 (476)
T KOG0330|consen 59 SFKSFAD-LGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEP------KLFF 131 (476)
T ss_pred hhcchhh-cCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCC------CCce
Confidence 4557888 79999999999999999999999999999999999999999999999999999999998743 3489
Q ss_pred EEEEcCcHHHHHHHHHHHHhcc-CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHH-cCCcCCCCceEEEEc
Q psy7557 153 VLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVS-RASIDLKAVSFVVLD 230 (936)
Q Consensus 153 ~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~-~~~~~~~~~~~lViD 230 (936)
++|++||||||.||.++|+.++ ..|+++.++.||.+...+...+.+.+||+|||||+|++++. .+.++++.++++|+|
T Consensus 132 ~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlD 211 (476)
T KOG0330|consen 132 ALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLD 211 (476)
T ss_pred EEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhc
Confidence 9999999999999999999995 67999999999999999999999999999999999999998 578899999999999
Q ss_pred cchhhhcCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHH
Q psy7557 231 EADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDW 310 (936)
Q Consensus 231 Eah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 310 (936)
|||+++++.|.+.+.+|+..++..+|+++||||+|..+.++....+.+|..+.+.... ..-..+.|.+.+++...|...
T Consensus 212 EADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky-~tv~~lkQ~ylfv~~k~K~~y 290 (476)
T KOG0330|consen 212 EADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKY-QTVDHLKQTYLFVPGKDKDTY 290 (476)
T ss_pred hHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchh-cchHHhhhheEeccccccchh
Confidence 9999999999999999999999999999999999999999999999999999877665 345678999999999999999
Q ss_pred HHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCC
Q psy7557 311 LMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPD 390 (936)
Q Consensus 311 l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~ 390 (936)
|..+++.. .+..+||||++...+..++-.|+..|+.+..+||+|++..|.-.++.|++|...||||||+++||+|+|.
T Consensus 291 LV~ll~e~--~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~ 368 (476)
T KOG0330|consen 291 LVYLLNEL--AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPH 368 (476)
T ss_pred HHHHHHhh--cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCC
Confidence 99999986 4589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHhhcCCc
Q psy7557 391 LTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEGGHE 447 (936)
Q Consensus 391 v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 447 (936)
|++|||||+|.+..+|+||+||+||+|+.|.+++|++..|.+.+..+...+.....+
T Consensus 369 Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~ 425 (476)
T KOG0330|consen 369 VDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPE 425 (476)
T ss_pred ceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999999999999999999999999999888877643
No 9
>KOG0341|consensus
Probab=100.00 E-value=6.1e-72 Score=560.43 Aligned_cols=415 Identities=39% Similarity=0.634 Sum_probs=379.7
Q ss_pred cccccCcCCccccCCCHHHHHHHHhhCCCceEEeecCCCccCCCCCCCCCCcccChHHhhcCCHHHHHHHHhCCCCCCcH
Q psy7557 22 IIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSP 101 (936)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~f~~~~~~~~~l~~~l~~~g~~~~~~ 101 (936)
-.+--|+++-.+.+||.++.+..|+..+ |.+.+ -.+|+|+.||.+ +.++..+++.|++.|+.+|||
T Consensus 130 Pi~T~WkPP~hir~mS~e~~e~vRk~~~-I~veG------------d~ipPPIksF~e-MKFP~~~L~~lk~KGI~~PTp 195 (610)
T KOG0341|consen 130 PIKTAWKPPRHIRKMSEEQRELVRKQLH-ILVEG------------DDIPPPIKSFKE-MKFPKPLLRGLKKKGIVHPTP 195 (610)
T ss_pred cchhccCCcHHHHHhhHHHHHHHHHhhe-EEeeC------------CCCCCchhhhhh-ccCCHHHHHHHHhcCCCCCCc
Confidence 3445567777889999999999999876 44442 368999999999 588999999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcC--CCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhc------
Q psy7557 102 IQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQ--TTPISERAGPSVLVMAPTRELATQIEREVNKI------ 173 (936)
Q Consensus 102 ~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~--~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~------ 173 (936)
||.+.+|.+++|||+|++|-||||||++|.+|++...+.+ ..|...+.||..||+||+||||.|+++.+..|
T Consensus 196 IQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e 275 (610)
T KOG0341|consen 196 IQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQE 275 (610)
T ss_pred eeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999877654 34566788999999999999999999888775
Q ss_pred -cCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHHHhhcC
Q psy7557 174 -DYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYIN 252 (936)
Q Consensus 174 -~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~ 252 (936)
+...+++..+.||.+..++...++.|.+|+|+|||||.|++.++.+++.-++|+++||||+|.|+||+..++.++..+.
T Consensus 276 ~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK 355 (610)
T KOG0341|consen 276 AGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFK 355 (610)
T ss_pred cCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHh
Confidence 3446788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCch
Q psy7557 253 PNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRK 332 (936)
Q Consensus 253 ~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~ 332 (936)
..+|+++||||+|..++.+++..+..|+.++++... +.+-++.|.+.++..+.|..+|++.+.. ..++++|||..+
T Consensus 356 ~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAG-AAsldViQevEyVkqEaKiVylLeCLQK---T~PpVLIFaEkK 431 (610)
T KOG0341|consen 356 GQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAG-AASLDVIQEVEYVKQEAKIVYLLECLQK---TSPPVLIFAEKK 431 (610)
T ss_pred hhhheeeeeccccHHHHHHHHhhcccceEEeccccc-ccchhHHHHHHHHHhhhhhhhHHHHhcc---CCCceEEEeccc
Confidence 999999999999999999999999999999999887 4466777888888888888888777765 478999999999
Q ss_pred HHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCC
Q psy7557 333 ASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGR 412 (936)
Q Consensus 333 ~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GR 412 (936)
..++.+.++|.-.|..+..+|||.+|++|...++.|+.|+.+||||||+++.|+|+|++.+|||||+|.+++.|+||+||
T Consensus 432 ~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGR 511 (610)
T KOG0341|consen 432 ADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGR 511 (610)
T ss_pred cChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCceeEEEEeccc-ChhhHHhHHHHHhhcCCccchhhhh
Q psy7557 413 TGRAGKSGESITLMTRK-DWSHAHEIIPILEEGGHESYMIWRR 454 (936)
Q Consensus 413 agR~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~ 454 (936)
+||.|+.|.|.+|+++. +...+.+|..+|.+++|++|.+...
T Consensus 512 TGRsg~~GiATTfINK~~~esvLlDLK~LL~EakQ~vP~~L~~ 554 (610)
T KOG0341|consen 512 TGRSGKTGIATTFINKNQEESVLLDLKHLLQEAKQEVPPVLAE 554 (610)
T ss_pred cCCCCCcceeeeeecccchHHHHHHHHHHHHHhhccCCHHHHH
Confidence 99999999999999986 5677889999999999999987644
No 10
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=2.8e-67 Score=605.15 Aligned_cols=429 Identities=29% Similarity=0.474 Sum_probs=383.2
Q ss_pred chHhhhhcccCCccccccCcCCccccC-CCHHHHHHHHhhCCCceEEeecCCCccCCCCCCCCCCcccChHHhhcCCHHH
Q psy7557 9 DRKERDKWAREPKIIKNVYKEDPEVAN-MTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEI 87 (936)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~f~~~~~~~~~l 87 (936)
.....-+|+.++++.++||..+++... ++.++++.+|++++ +.+.+ .++|.|+.+|++ +++++.+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-i~~~g------------~~~p~pi~~f~~-~~l~~~l 132 (518)
T PLN00206 67 VAVGAPKPKRLPATDECFYVRDPGSTSGLSSSQAELLRRKLE-IHVKG------------EAVPPPILSFSS-CGLPPKL 132 (518)
T ss_pred CCcCCCchhhcCCcCCcCCccCcchhccCCHHHHHHHHHHCC-CEecC------------CCCCchhcCHHh-CCCCHHH
Confidence 344556788889999999998887754 99999999998774 55432 267999999998 5899999
Q ss_pred HHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCC-CCCCCCCEEEEEcCcHHHHHHH
Q psy7557 88 LRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTP-ISERAGPSVLVMAPTRELATQI 166 (936)
Q Consensus 88 ~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~-~~~~~~~~~lil~Pt~~La~Q~ 166 (936)
+++|.+.||.+|||+|.+|||.+++|+|++++||||||||++|++|++.++...... .....++++|||+||||||.|+
T Consensus 133 ~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi 212 (518)
T PLN00206 133 LLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQV 212 (518)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887643211 1123678999999999999999
Q ss_pred HHHHHhcc-CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHH
Q psy7557 167 EREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQIN 245 (936)
Q Consensus 167 ~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~ 245 (936)
++.++.+. ..++++..++||.....+...+..+++|+|+||++|.+++.++.+.++++++|||||||+|+++||+.++.
T Consensus 213 ~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~ 292 (518)
T PLN00206 213 EDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVM 292 (518)
T ss_pred HHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHH
Confidence 99999874 45788999999999998888888899999999999999999988899999999999999999999999999
Q ss_pred HHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhccCCCCcE
Q psy7557 246 KTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKV 325 (936)
Q Consensus 246 ~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~ 325 (936)
.+...++ ++|+++||||+++.++.++..++.++..+.++... .....+.+.+..+....+...+.+++.......+++
T Consensus 293 ~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~-~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~ 370 (518)
T PLN00206 293 QIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPN-RPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPA 370 (518)
T ss_pred HHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCC-CCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCE
Confidence 9988774 68999999999999999999999999988877654 344567788888888888888888887664556789
Q ss_pred EEEeCchHHHHHHHHHhhh-cCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEecCCCCcc
Q psy7557 326 MVFMGRKASVSAMSSDLAC-QYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIE 404 (936)
Q Consensus 326 iVF~~~~~~~~~l~~~L~~-~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~ 404 (936)
||||+++..++.++..|.. .++.+..+||+|++.+|..+++.|++|+.+|||||++++||||+|++++|||||+|.++.
T Consensus 371 iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~ 450 (518)
T PLN00206 371 VVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIK 450 (518)
T ss_pred EEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHH
Confidence 9999999999999999975 688999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHhhcCCccchhhh
Q psy7557 405 EYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEGGHESYMIWR 453 (936)
Q Consensus 405 ~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 453 (936)
+|+||+|||||.|..|.+++|++.++...+.++++.++.+++.+|....
T Consensus 451 ~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~vp~~l~ 499 (518)
T PLN00206 451 EYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSGAAIPRELA 499 (518)
T ss_pred HHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 9999999999999999999999999999999999999999999887543
No 11
>KOG0328|consensus
Probab=100.00 E-value=1e-67 Score=509.74 Aligned_cols=370 Identities=32% Similarity=0.558 Sum_probs=346.6
Q ss_pred CCcccChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCC
Q psy7557 71 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAG 150 (936)
Q Consensus 71 p~p~~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~ 150 (936)
-.++.+|++ +++.+++++++...||++|+.+|+.|+|.+++|+|+++.|.+|+|||.+|.+.++..+... .+.
T Consensus 23 ~~v~~~F~~-Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~------~r~ 95 (400)
T KOG0328|consen 23 VKVIPTFDD-MGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS------VRE 95 (400)
T ss_pred cccccchhh-cCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc------cce
Confidence 467889998 6999999999999999999999999999999999999999999999999998877665432 345
Q ss_pred CEEEEEcCcHHHHHHHHHHHHhcc-CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEE
Q psy7557 151 PSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVL 229 (936)
Q Consensus 151 ~~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lVi 229 (936)
.+++|++||||||.|+.+.+..++ +.++.+..+.||.+..+....+..|.+++.+|||++.+++.++.+.-+.++++|+
T Consensus 96 tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVL 175 (400)
T KOG0328|consen 96 TQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVL 175 (400)
T ss_pred eeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEe
Confidence 689999999999999999999986 5799999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhcCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchh-hH
Q psy7557 230 DEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDE-KK 308 (936)
Q Consensus 230 DEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-k~ 308 (936)
||||.|++.||..++..+..++|++.|++++|||+|.++.+...+|+.+|+.+.+...+.. ...++|.++.++.++ |+
T Consensus 176 DEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdelt-lEgIKqf~v~ve~EewKf 254 (400)
T KOG0328|consen 176 DEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELT-LEGIKQFFVAVEKEEWKF 254 (400)
T ss_pred ccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCc-hhhhhhheeeechhhhhH
Confidence 9999999999999999999999999999999999999999999999999999999887754 456888888888777 99
Q ss_pred HHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCC
Q psy7557 309 DWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDV 388 (936)
Q Consensus 309 ~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDi 388 (936)
+.|.++...+ .-.+.+|||||+..+++|.+.++..++.+.++||+|++++|..++++|++|+.+||++||+.+||+|+
T Consensus 255 dtLcdLYd~L--tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv 332 (400)
T KOG0328|consen 255 DTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDV 332 (400)
T ss_pred hHHHHHhhhh--ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCc
Confidence 9999998876 46799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHhhcCCccch
Q psy7557 389 PDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEGGHESYM 450 (936)
Q Consensus 389 p~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 450 (936)
|.|++|||||+|.+.+.|+||+||.||.|+.|.++.|+..+|.+.++++.+++.-.-.+.|+
T Consensus 333 ~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~ 394 (400)
T KOG0328|consen 333 QQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPM 394 (400)
T ss_pred ceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999877766665
No 12
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.4e-66 Score=587.63 Aligned_cols=363 Identities=43% Similarity=0.705 Sum_probs=334.0
Q ss_pred cChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEE
Q psy7557 75 TSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVL 154 (936)
Q Consensus 75 ~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~l 154 (936)
.+|++ +++++.+++++.++||.+|||||.++||.++.|+|+++.|+||||||++|++|++..+.... ......+|
T Consensus 29 ~~F~~-l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~----~~~~~~aL 103 (513)
T COG0513 29 PEFAS-LGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV----ERKYVSAL 103 (513)
T ss_pred CCHhh-cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccc----ccCCCceE
Confidence 67887 78999999999999999999999999999999999999999999999999999999965321 11111299
Q ss_pred EEcCcHHHHHHHHHHHHhccC-C-CCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccc
Q psy7557 155 VMAPTRELATQIEREVNKIDY-K-GLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEA 232 (936)
Q Consensus 155 il~Pt~~La~Q~~~~~~~~~~-~-~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEa 232 (936)
|++||||||.|+++.+..+.. . ++++..++||.+...+...+..++|||||||||++|++.++.++++.+.++|+|||
T Consensus 104 il~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEA 183 (513)
T COG0513 104 ILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEA 183 (513)
T ss_pred EECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccH
Confidence 999999999999999999853 4 78999999999999999999989999999999999999999999999999999999
Q ss_pred hhhhcCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCc-ccCCceEEEEEEeCchh-hHHH
Q psy7557 233 DRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDL-AATHTVTQKIIILDEDE-KKDW 310 (936)
Q Consensus 233 h~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~-k~~~ 310 (936)
|+|+++||.+++..|+..+++++|+++||||+|..+..++..++.+|..+.+..... .....+.|.++.+.... |...
T Consensus 184 DrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~ 263 (513)
T COG0513 184 DRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLEL 263 (513)
T ss_pred hhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888874332 25678999999999876 9999
Q ss_pred HHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCC
Q psy7557 311 LMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPD 390 (936)
Q Consensus 311 l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~ 390 (936)
|..++... ...++||||+|+..++.++..|...|+++..+||+|+|++|..+++.|++|+.+||||||+++||||+|+
T Consensus 264 L~~ll~~~--~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~ 341 (513)
T COG0513 264 LLKLLKDE--DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPD 341 (513)
T ss_pred HHHHHhcC--CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccc
Confidence 99998875 3447999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEecCCCCccccccCCCCcccCCCceeEEEEeccc-ChhhHHhHHHHHhhc
Q psy7557 391 LTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRK-DWSHAHEIIPILEEG 444 (936)
Q Consensus 391 v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~ 444 (936)
|++|||||+|.+.++|+||+|||||+|+.|.+++|+++. |...+..+.+.+...
T Consensus 342 v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 342 VSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred cceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999986 888888888876554
No 13
>KOG0333|consensus
Probab=100.00 E-value=2.6e-66 Score=540.37 Aligned_cols=389 Identities=39% Similarity=0.615 Sum_probs=344.9
Q ss_pred HHhhccHHHhhhhcccCccccCCccCChhhhCCCHHHHHHHHhhcCCceeeeecCCCCcCCCCCCCCCCCcCChHHhhcC
Q psy7557 524 LMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQH 603 (936)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~f~~~~~l 603 (936)
+...++...+..|.+-|+. .....+|++.+|..|+..++ +++.. -.+|+|+.+|++ .++
T Consensus 194 ~qk~~k~~~k~~~DdrhW~-------~k~l~Em~~rdwri~redyn-is~kg------------~~lpnplrnwEE-~~~ 252 (673)
T KOG0333|consen 194 LQKVCKKEAKSGWDDRHWS-------EKVLAEMTERDWRIFREDYN-ISIKG------------GRLPNPLRNWEE-SGF 252 (673)
T ss_pred HHHhhhhhhhccccccchh-------hhhHHhcCCccceeeeccee-eeecC------------CCCCccccChhh-cCC
Confidence 3344444445555544432 23566778887777765544 33332 268999999999 479
Q ss_pred CHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCC--C-CccCCCCEEEEEecCH
Q psy7557 604 YPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTT--P-ISERAGPSVLVMAPTR 680 (936)
Q Consensus 604 ~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~--~-~~~~~~~~~lil~Pt~ 680 (936)
+.++++.+.+.||..|+|||.+|+|..++.+|+|++|.||||||++|++|++..+...+. . .....||.+++++|||
T Consensus 253 P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptR 332 (673)
T KOG0333|consen 253 PLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTR 332 (673)
T ss_pred CHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHH
Confidence 999999999999999999999999999999999999999999999999999987755331 1 1235699999999999
Q ss_pred HHHHHHHHHHHhcc-CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCC
Q psy7557 681 ELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLG 759 (936)
Q Consensus 681 ~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~ 759 (936)
+||+||.+.-.+|+ ..+++++.+.||.+.+++--++..||+|+||||++|.+.+.+..+-++++.+||+||||+|+|+|
T Consensus 333 eLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmg 412 (673)
T KOG0333|consen 333 ELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMG 412 (673)
T ss_pred HHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhccc
Confidence 99999999999984 67899999999999999988999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhhhcCC-------------------------CceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCc
Q psy7557 760 FEPQINKTSIYINP-------------------------NRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHT 814 (936)
Q Consensus 760 ~~~~~~~i~~~~~~-------------------------~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 814 (936)
|.+++..++..++. -+|+++||||+|+.+..+++.|+.+|+.+.++... .....
T Consensus 413 fE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~g-k~~~r 491 (673)
T KOG0333|consen 413 FEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAG-KPTPR 491 (673)
T ss_pred ccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCC-CCccc
Confidence 99999999998862 16999999999999999999999999999999876 44566
Q ss_pred eEEEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCc
Q psy7557 815 VTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYAR 894 (936)
Q Consensus 815 ~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~ 894 (936)
+.|.+.++....|...|.+++.+. ..+|+|||+|+++.|+.+|..|.+.++.++.+||+-+|++|+.+++.|++|..+
T Consensus 492 veQ~v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~d 569 (673)
T KOG0333|consen 492 VEQKVEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGD 569 (673)
T ss_pred hheEEEEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCC
Confidence 899999999999999999999986 578999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 895 ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 895 vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
||||||+++||||+|+|++|||||+++++++|+|||||||||
T Consensus 570 IlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRA 611 (673)
T KOG0333|consen 570 ILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRA 611 (673)
T ss_pred EEEEecccccCCCCCccceeeecchhhhHHHHHHHhcccccc
Confidence 999999999999999999999999999999999999999997
No 14
>KOG0335|consensus
Probab=100.00 E-value=1.9e-66 Score=552.20 Aligned_cols=393 Identities=38% Similarity=0.635 Sum_probs=357.7
Q ss_pred CccCCCCCCCCCCcccChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhh
Q psy7557 60 GQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH 139 (936)
Q Consensus 60 ~~~~~~~~~~~p~p~~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~ 139 (936)
..+.+.++.++|.++.+|.+ -.+.+.+..+++..||..|||+|+.+||.+..|+|+++||+||||||.+|++|++.+++
T Consensus 59 ~i~v~~~G~~~p~~i~~f~~-~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~ 137 (482)
T KOG0335|consen 59 DIPVKVSGRDVPPHIPTFDE-AILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLL 137 (482)
T ss_pred ceeeeccCCccCCCcccccc-cchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHH
Confidence 33445667889999999986 46778889999999999999999999999999999999999999999999999999887
Q ss_pred cCCC----CCCCCCCCEEEEEcCcHHHHHHHHHHHHhcc-CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHH
Q psy7557 140 LQTT----PISERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFV 214 (936)
Q Consensus 140 ~~~~----~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l 214 (936)
.... .......|.++|++||||||.|++++.+++. ..+++++.+|||.+...+...+..+|+|+|+|||+|.+++
T Consensus 138 ~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~ 217 (482)
T KOG0335|consen 138 DEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLI 217 (482)
T ss_pred hcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhh
Confidence 6532 1111236999999999999999999999986 4689999999999999999999999999999999999999
Q ss_pred HcCCcCCCCceEEEEccchhhhc-CCCHHHHHHHHhhcC----CCCcEEEEEeccchHHHHHHHHhcCC-CEEEEeCCCC
Q psy7557 215 SRASIDLKAVSFVVLDEADRMLD-LGFEPQINKTSIYIN----PNRQTVMTSATWNKDVQRVAKKYMVN-PVKVNVGSLD 288 (936)
Q Consensus 215 ~~~~~~~~~~~~lViDEah~l~~-~~~~~~~~~i~~~~~----~~~q~~~~SAT~~~~~~~~~~~~~~~-~~~i~~~~~~ 288 (936)
..+.+.+++++++|+||||+|+| +||.+++++|..+.. ..+|++|||||+|..+..++..++.+ .+.+.++...
T Consensus 218 e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg 297 (482)
T KOG0335|consen 218 ERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVG 297 (482)
T ss_pred hcceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeec
Confidence 99999999999999999999999 999999999998874 37899999999999999999988887 6777776665
Q ss_pred cccCCceEEEEEEeCchhhHHHHHHHHHhccC--CCC-----cEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHH
Q psy7557 289 LAATHTVTQKIIILDEDEKKDWLMEFFDNMDE--ERD-----KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDR 361 (936)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~--~~~-----~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R 361 (936)
....++.|.+..+.+.+|...|++++..... ..+ +++|||.+++.|..++..|...+++...+||+.+|.+|
T Consensus 298 -~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er 376 (482)
T KOG0335|consen 298 -STSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIER 376 (482)
T ss_pred -cccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHH
Confidence 4577899999999999999999999986531 233 89999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHHHHH
Q psy7557 362 EIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPIL 441 (936)
Q Consensus 362 ~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l 441 (936)
.+.++.|++|++.|||||++++||+|+|+|++|||||+|.+..+|+||+|||||.|+.|.++.|++..+...++.|.++|
T Consensus 377 ~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l 456 (482)
T KOG0335|consen 377 EQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEIL 456 (482)
T ss_pred HHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCccchhhhh
Q psy7557 442 EEGGHESYMIWRR 454 (936)
Q Consensus 442 ~~~~~~~~~~~~~ 454 (936)
.++++++|.....
T Consensus 457 ~ea~q~vP~wl~~ 469 (482)
T KOG0335|consen 457 TEANQEVPQWLSE 469 (482)
T ss_pred HHhcccCcHHHHh
Confidence 9999999975544
No 15
>KOG0330|consensus
Probab=100.00 E-value=2.3e-66 Score=523.20 Aligned_cols=333 Identities=36% Similarity=0.564 Sum_probs=313.9
Q ss_pred cCChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEE
Q psy7557 594 VTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSV 673 (936)
Q Consensus 594 ~~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~ 673 (936)
..+|.+ +++.|++++++...||..||+||+++||.++.|+|+|+.|.||||||.+|++|++.+++.++ ..+.+
T Consensus 60 ~~sf~d-Lgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p------~~~~~ 132 (476)
T KOG0330|consen 60 FKSFAD-LGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEP------KLFFA 132 (476)
T ss_pred hcchhh-cCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCC------CCceE
Confidence 456777 78999999999999999999999999999999999999999999999999999999998753 35899
Q ss_pred EEEecCHHHHHHHHHHHHhcc-CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHH-cCCCCCCCceEEEEcc
Q psy7557 674 LVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVS-RASIDLKAVSFVVLDE 751 (936)
Q Consensus 674 lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~-~~~~~~~~i~~lViDE 751 (936)
+|++||||||.||.+++..++ ..|++++++.||.+...+...+.+.+||+|||||+|++++. .+.+++..++++|+||
T Consensus 133 lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDE 212 (476)
T KOG0330|consen 133 LVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDE 212 (476)
T ss_pred EEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhch
Confidence 999999999999999999994 67999999999999999999999999999999999999998 4678899999999999
Q ss_pred cchhccCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHH
Q psy7557 752 ADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWL 831 (936)
Q Consensus 752 ah~l~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 831 (936)
||+++++.|...+.+|+..++..+|+++||||+|..+.++....+.+|..+.+.... .....+.|.+.+++...|..+|
T Consensus 213 ADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky-~tv~~lkQ~ylfv~~k~K~~yL 291 (476)
T KOG0330|consen 213 ADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKY-QTVDHLKQTYLFVPGKDKDTYL 291 (476)
T ss_pred HHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchh-cchHHhhhheEeccccccchhH
Confidence 999999999999999999999999999999999999999999999999999877654 4455688999999999999999
Q ss_pred HHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCC
Q psy7557 832 MEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDL 911 (936)
Q Consensus 832 ~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v 911 (936)
+++++.. .+.++||||++...++.++-.|..+|+.+..+||.|++..|.-.++.|++|...||||||+++||+|+|.|
T Consensus 292 V~ll~e~--~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~V 369 (476)
T KOG0330|consen 292 VYLLNEL--AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHV 369 (476)
T ss_pred HHHHHhh--cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCc
Confidence 9999987 44889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEccCCCChhhhHhhhhhccCC
Q psy7557 912 THVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 912 ~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
++|||||+|.+..+||||+||+||+
T Consensus 370 d~VVNyDiP~~skDYIHRvGRtaRa 394 (476)
T KOG0330|consen 370 DVVVNYDIPTHSKDYIHRVGRTARA 394 (476)
T ss_pred eEEEecCCCCcHHHHHHHccccccc
Confidence 9999999999999999999999996
No 16
>KOG0338|consensus
Probab=100.00 E-value=1.2e-66 Score=540.57 Aligned_cols=363 Identities=35% Similarity=0.527 Sum_probs=331.0
Q ss_pred cChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEE
Q psy7557 75 TSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVL 154 (936)
Q Consensus 75 ~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~l 154 (936)
.||.+ ++|+..+++++..+||..|||||.++||.++-|+|+++||.||||||.||++|+|.+++..+.. ....+||
T Consensus 181 ~sF~~-mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~---~~~TRVL 256 (691)
T KOG0338|consen 181 ESFQS-MNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK---VAATRVL 256 (691)
T ss_pred hhHHh-cccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc---CcceeEE
Confidence 47877 6999999999999999999999999999999999999999999999999999999999876532 4567899
Q ss_pred EEcCcHHHHHHHHHHHHhcc-CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcC-CcCCCCceEEEEccc
Q psy7557 155 VMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRA-SIDLKAVSFVVLDEA 232 (936)
Q Consensus 155 il~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-~~~~~~~~~lViDEa 232 (936)
||+||||||.|++...++++ +..+.++.+.||-+...|...++.++||||+|||||+|++.+. .++++++..+|+|||
T Consensus 257 VL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEA 336 (691)
T KOG0338|consen 257 VLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEA 336 (691)
T ss_pred EEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechH
Confidence 99999999999999999875 5679999999999999999999999999999999999999875 788999999999999
Q ss_pred hhhhcCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeC---chhhHH
Q psy7557 233 DRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD---EDEKKD 309 (936)
Q Consensus 233 h~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~k~~ 309 (936)
|+|++.||..++..|+..++.++|+++||||++..+.+++...+.+|+.+.+.+.... ...+.|.++.+. +..+..
T Consensus 337 DRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~-a~~LtQEFiRIR~~re~dRea 415 (691)
T KOG0338|consen 337 DRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDT-APKLTQEFIRIRPKREGDREA 415 (691)
T ss_pred HHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCcccc-chhhhHHHheeccccccccHH
Confidence 9999999999999999999999999999999999999999999999999999887644 345666665443 334555
Q ss_pred HHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCC
Q psy7557 310 WLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVP 389 (936)
Q Consensus 310 ~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip 389 (936)
.+..++... ....+|||+.|++.|..+.-.|...|.++..+||.|+|.+|...++.|++++++||||||+++||+||+
T Consensus 416 ~l~~l~~rt--f~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~ 493 (691)
T KOG0338|consen 416 MLASLITRT--FQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIE 493 (691)
T ss_pred HHHHHHHHh--cccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCcc
Confidence 666666654 468999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHhhc
Q psy7557 390 DLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEG 444 (936)
Q Consensus 390 ~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 444 (936)
+|.+||||++|.++..|+||+|||+|+|+.|.+++|+.++|.+.++.+++.-...
T Consensus 494 gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~~~a 548 (691)
T KOG0338|consen 494 GVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSSTKA 548 (691)
T ss_pred ceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhhhhc
Confidence 9999999999999999999999999999999999999999999888888765433
No 17
>KOG0334|consensus
Probab=100.00 E-value=5.4e-65 Score=576.98 Aligned_cols=420 Identities=40% Similarity=0.656 Sum_probs=390.9
Q ss_pred ccCCccccccCcCCccccCCCHHHHHHHHhhCCCceEEeecCCCccCCCCCCCCCCcccChHHhhcCCHHHHHHHHhCCC
Q psy7557 17 AREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSF 96 (936)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~f~~~~~~~~~l~~~l~~~g~ 96 (936)
..+.+|.++||.+.++++.|+.++++.++.....+.+.+ ..+|.|+.+|.+ .++...++..++++||
T Consensus 319 ~~~epFRknfy~e~~di~~ms~~eV~~yr~~l~~i~v~g------------~~~pkpv~sW~q-~gl~~~il~tlkkl~y 385 (997)
T KOG0334|consen 319 ISYEPFRKNFYIEVRDIKRMSAAEVDEYRCELDGIKVKG------------KECPKPVTSWTQ-CGLSSKILETLKKLGY 385 (997)
T ss_pred ccchhhhhcccccchhHHHHHHHHHHHhhcCccceeecc------------CCCCcccchHhh-CCchHHHHHHHHHhcC
Confidence 357889999999999999999999999998887666664 378999999999 5999999999999999
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhcc-C
Q psy7557 97 TTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID-Y 175 (936)
Q Consensus 97 ~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~-~ 175 (936)
..|+|||.+|||++++|+|+|++|.||||||++|++|++.|+..++... .+.||.+||++|||+||.|+++.+++|. .
T Consensus 386 ~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~-~gdGPi~li~aPtrela~QI~r~~~kf~k~ 464 (997)
T KOG0334|consen 386 EKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLE-EGDGPIALILAPTRELAMQIHREVRKFLKL 464 (997)
T ss_pred CCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChh-hCCCceEEEEcCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999998886544 4669999999999999999999999984 6
Q ss_pred CCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCC---cCCCCceEEEEccchhhhcCCCHHHHHHHHhhcC
Q psy7557 176 KGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRAS---IDLKAVSFVVLDEADRMLDLGFEPQINKTSIYIN 252 (936)
Q Consensus 176 ~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~---~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~ 252 (936)
.+++++++|||.....++..+++|+.|+|+|||+.+|++-.+. .++.++.++|+||||+|+++||.+++..|+..++
T Consensus 465 l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlr 544 (997)
T KOG0334|consen 465 LGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLR 544 (997)
T ss_pred cCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcc
Confidence 7999999999999999999999999999999999999986544 3466677999999999999999999999999999
Q ss_pred CCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeC-chhhHHHHHHHHHhccCCCCcEEEEeCc
Q psy7557 253 PNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD-EDEKKDWLMEFFDNMDEERDKVMVFMGR 331 (936)
Q Consensus 253 ~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~~~~~~iVF~~~ 331 (936)
+++|+++||||+|..++.++...+..|+.+.++... ..+..+.|.+.++. +.+|+..|.++|.... ...++||||.+
T Consensus 545 pdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~s-vV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~-e~~~tiiFv~~ 622 (997)
T KOG0334|consen 545 PDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRS-VVCKEVTQVVRVCAIENEKFLKLLELLGERY-EDGKTIIFVDK 622 (997)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccce-eEeccceEEEEEecCchHHHHHHHHHHHHHh-hcCCEEEEEcC
Confidence 999999999999999999999999999998888554 56788999999998 8899999999998874 47899999999
Q ss_pred hHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEecCCCCccccccCCC
Q psy7557 332 KASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVG 411 (936)
Q Consensus 332 ~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~G 411 (936)
...|+.+.+.|...++.+..+||+.++.+|..++++|++|.+.+||||++++||+|++++.+|||||+|...++|+||.|
T Consensus 623 qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~g 702 (997)
T KOG0334|consen 623 QEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVG 702 (997)
T ss_pred chHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCceeEEEEecccChhhHHhHHHHHhhcCCccchhh
Q psy7557 412 RTGRAGKSGESITLMTRKDWSHAHEIIPILEEGGHESYMIW 452 (936)
Q Consensus 412 RagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 452 (936)
||||+|+.|.|++|+++++.+.+.+|.+.++..++..|...
T Consensus 703 RTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P~~l 743 (997)
T KOG0334|consen 703 RTGRAGRKGAAVTFITPDQLKYAGDLCKALELSKQPVPKLL 743 (997)
T ss_pred ccccCCccceeEEEeChHHhhhHHHHHHHHHhccCCCchHH
Confidence 99999999999999999999999999999999999888644
No 18
>KOG0341|consensus
Probab=100.00 E-value=6.7e-66 Score=516.95 Aligned_cols=384 Identities=39% Similarity=0.640 Sum_probs=346.5
Q ss_pred hhcccCccccCCccCChhhhCCCHHHHHHHHhhcCCceeeeecCCCCcCCCCCCCCCCCcCChHHhhcCCHHHHHHHHhC
Q psy7557 535 KWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENL 614 (936)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~f~~~~~l~~~~~~~l~~~ 614 (936)
+......-.+..|+++-.+.+|+.++.+..++++. |.+.+. .+|+|+.+|.+ ..++..+++.|++.
T Consensus 123 kGi~Y~ePi~T~WkPP~hir~mS~e~~e~vRk~~~-I~veGd------------~ipPPIksF~e-MKFP~~~L~~lk~K 188 (610)
T KOG0341|consen 123 KGITYEEPIKTAWKPPRHIRKMSEEQRELVRKQLH-ILVEGD------------DIPPPIKSFKE-MKFPKPLLRGLKKK 188 (610)
T ss_pred CCCcccCcchhccCCcHHHHHhhHHHHHHHHHhhe-EEeeCC------------CCCCchhhhhh-ccCCHHHHHHHHhc
Confidence 34444445667889999999999999999998875 334332 67999999999 68899999999999
Q ss_pred CCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccC--CCCccCCCCEEEEEecCHHHHHHHHHHHHh
Q psy7557 615 SFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQT--TPISERAGPSVLVMAPTRELATQIEREVNK 692 (936)
Q Consensus 615 g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~--~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 692 (936)
|+.+|||||.|.+|.+++|+|+|++|-||||||++|.+|++...+.+. .|+.++.||..|||||+||||.|+++.+..
T Consensus 189 GI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~ 268 (610)
T KOG0341|consen 189 GIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQ 268 (610)
T ss_pred CCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987776543 467788999999999999999999998887
Q ss_pred c-------cCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHH
Q psy7557 693 I-------DYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQIN 765 (936)
Q Consensus 693 ~-------~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~ 765 (936)
| +.+.++...+.||.+...+...++.|.||+|+||+||.+++..+.+++.-++|+++||||+|+++||...++
T Consensus 269 ~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir 348 (610)
T KOG0341|consen 269 YVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIR 348 (610)
T ss_pred HHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHH
Confidence 6 355688899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHHHHhccCCCCcE
Q psy7557 766 KTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKV 845 (936)
Q Consensus 766 ~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~ 845 (936)
.|+..+...+|+++||||+|..++.+++..+..|+.++++.... ..-++.|.+.++....|.-+|++-++. ..+|+
T Consensus 349 ~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGA-AsldViQevEyVkqEaKiVylLeCLQK---T~PpV 424 (610)
T KOG0341|consen 349 TIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGA-ASLDVIQEVEYVKQEAKIVYLLECLQK---TSPPV 424 (610)
T ss_pred HHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccc-cchhHHHHHHHHHhhhhhhhHHHHhcc---CCCce
Confidence 99999999999999999999999999999999999999998763 445566666677777776666555554 46899
Q ss_pred EEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEEccCCCChhh
Q psy7557 846 MVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEE 925 (936)
Q Consensus 846 iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~ 925 (936)
+|||..+..++.+.++|--.|..+..+||+.+|++|...++.|+.|+.+||||||+++.|+|+|++.||||||+|..++.
T Consensus 425 LIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIEN 504 (610)
T KOG0341|consen 425 LIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIEN 504 (610)
T ss_pred EEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhhccCC
Q psy7557 926 YVHRVGRTGEF 936 (936)
Q Consensus 926 yiqr~GRaGR~ 936 (936)
|+||+|||||.
T Consensus 505 YVHRIGRTGRs 515 (610)
T KOG0341|consen 505 YVHRIGRTGRS 515 (610)
T ss_pred HHHHhcccCCC
Confidence 99999999994
No 19
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=5.6e-63 Score=570.43 Aligned_cols=385 Identities=45% Similarity=0.756 Sum_probs=348.4
Q ss_pred ccCccccCCccCChhhhCCCHHHHHHHHhhcCCceeeeecCCCCcCCCCCCCCCCCcCChHHhhcCCHHHHHHHHhCCCC
Q psy7557 538 REPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFT 617 (936)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~f~~~~~l~~~~~~~l~~~g~~ 617 (936)
...++.+++|.+++++..++.++++.+++... +.+. . +..+|.|+.+|++ +++++.+++.|+++||+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~--~---------g~~~p~p~~~f~~-~~l~~~l~~~l~~~g~~ 151 (545)
T PTZ00110 85 NLVPFEKNFYKEHPEVSALSSKEVDEIRKEKE-ITII--A---------GENVPKPVVSFEY-TSFPDYILKSLKNAGFT 151 (545)
T ss_pred cccchhhhcccCChhhhcCCHHHHHHHHHhcC-cEEe--c---------CCCCCcccCCHhh-cCCCHHHHHHHHHCCCC
Confidence 35688899999999999999999999987754 3321 0 1257899999998 68999999999999999
Q ss_pred CCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhcc-CC
Q psy7557 618 TPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID-YK 696 (936)
Q Consensus 618 ~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~-~~ 696 (936)
+|||+|.++||.+++|+|+|++||||||||++|++|++.++..+.. .....+|.+|||+||||||.|+.+.+.++. ..
T Consensus 152 ~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~-~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~ 230 (545)
T PTZ00110 152 EPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPL-LRYGDGPIVLVLAPTRELAEQIREQCNKFGASS 230 (545)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhccc-ccCCCCcEEEEECChHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999988765432 123457899999999999999999999985 45
Q ss_pred CCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHHHhhhcCCCce
Q psy7557 697 GLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQ 776 (936)
Q Consensus 697 ~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q 776 (936)
++++.+++||.....+...+..+++|+|+||++|.+++.++...++++++|||||||+|++++|..++..+...+++++|
T Consensus 231 ~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q 310 (545)
T PTZ00110 231 KIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 310 (545)
T ss_pred CccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCe
Confidence 78899999999998898899999999999999999999998888999999999999999999999999999999999999
Q ss_pred EEEEEecCChHHHHHHHHhcC-CCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHHH
Q psy7557 777 TVMTSATWNKDVQRVAKKYMV-NPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASV 855 (936)
Q Consensus 777 ~v~~SAT~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~ 855 (936)
++++|||+|..+..++..++. +|+.+.++.........+.+.+..+....|...|..++........++||||++++.|
T Consensus 311 ~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a 390 (545)
T PTZ00110 311 TLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGA 390 (545)
T ss_pred EEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHH
Confidence 999999999999999998875 6888888776655667788888888888888889888887755678999999999999
Q ss_pred HHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccC
Q psy7557 856 SAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGE 935 (936)
Q Consensus 856 ~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR 935 (936)
+.++..|...++.+..+||+|++++|..+++.|++|+.+|||||++++||||+|+|++||+||+|.++++|+||+|||||
T Consensus 391 ~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR 470 (545)
T PTZ00110 391 DFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGR 470 (545)
T ss_pred HHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q psy7557 936 F 936 (936)
Q Consensus 936 ~ 936 (936)
+
T Consensus 471 ~ 471 (545)
T PTZ00110 471 A 471 (545)
T ss_pred C
Confidence 5
No 20
>KOG0340|consensus
Probab=100.00 E-value=2e-63 Score=495.86 Aligned_cols=366 Identities=33% Similarity=0.492 Sum_probs=329.4
Q ss_pred cChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEE
Q psy7557 75 TSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVL 154 (936)
Q Consensus 75 ~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~l 154 (936)
..|+. +++.+++.+.++.+|+++|||+|..+||.++.|+|+|.||.||||||.+|.+|++..+... ..|-.++
T Consensus 7 ~~F~~-LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsed------P~giFal 79 (442)
T KOG0340|consen 7 KPFSI-LGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSED------PYGIFAL 79 (442)
T ss_pred Cchhh-cCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccC------CCcceEE
Confidence 35777 7999999999999999999999999999999999999999999999999999999988543 4577899
Q ss_pred EEcCcHHHHHHHHHHHHhcc-CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcC----CcCCCCceEEEE
Q psy7557 155 VMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRA----SIDLKAVSFVVL 229 (936)
Q Consensus 155 il~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~----~~~~~~~~~lVi 229 (936)
|+.||||||.|+.++|..++ ..++++..++||.+.-.+...+...+|++|+|||++.+++..+ ...+++++++|+
T Consensus 80 vlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVl 159 (442)
T KOG0340|consen 80 VLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVL 159 (442)
T ss_pred EecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEe
Confidence 99999999999999999986 5799999999999999898889899999999999999998765 345899999999
Q ss_pred ccchhhhcCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeC-CCCcccCCceEEEEEEeCchhhH
Q psy7557 230 DEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVG-SLDLAATHTVTQKIIILDEDEKK 308 (936)
Q Consensus 230 DEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~k~ 308 (936)
||||++++..|...+..+...+|..+|.++||||+...+..+.......+...... ..+......+.|.++.++...|.
T Consensus 160 DEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkd 239 (442)
T KOG0340|consen 160 DEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKD 239 (442)
T ss_pred cchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhH
Confidence 99999999999999999999999999999999999988776655444433222222 23445667889999999999999
Q ss_pred HHHHHHHHhccC-CCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCC
Q psy7557 309 DWLMEFFDNMDE-ERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLD 387 (936)
Q Consensus 309 ~~l~~~l~~~~~-~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiD 387 (936)
.+++..+..+.+ ..+.++||+++..+|+.++..|...++.+.++||.|+|.+|...+..|+++.++||||||+++||+|
T Consensus 240 aYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLD 319 (442)
T KOG0340|consen 240 AYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLD 319 (442)
T ss_pred HHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCC
Confidence 999999998855 5789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHhhcCCc
Q psy7557 388 VPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEGGHE 447 (936)
Q Consensus 388 ip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 447 (936)
||.|++|||||.|+++.+|+||+||++|+|+.|.+++|+++.|.+..+.+.+-+...-.+
T Consensus 320 IP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e 379 (442)
T KOG0340|consen 320 IPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTE 379 (442)
T ss_pred CCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999999999999999999999888888766655433
No 21
>KOG0342|consensus
Probab=100.00 E-value=2.6e-63 Score=516.76 Aligned_cols=361 Identities=34% Similarity=0.533 Sum_probs=327.7
Q ss_pred ccChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEE
Q psy7557 74 VTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSV 153 (936)
Q Consensus 74 ~~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~ 153 (936)
...|++ ..+++..+++++.+||.++|++|..+++.++.|+|+++.|.||||||+||++|++..+...... ...+..+
T Consensus 81 ~~~f~~-~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~--~r~~~~v 157 (543)
T KOG0342|consen 81 TFRFEE-GSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFK--PRNGTGV 157 (543)
T ss_pred hhHhhc-cccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccC--CCCCeeE
Confidence 334555 6899999999999999999999999999999999999999999999999999999998765432 2467789
Q ss_pred EEEcCcHHHHHHHHHHHHhc-cCC-CCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcC-CcCCCCceEEEEc
Q psy7557 154 LVMAPTRELATQIEREVNKI-DYK-GLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRA-SIDLKAVSFVVLD 230 (936)
Q Consensus 154 lil~Pt~~La~Q~~~~~~~~-~~~-~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-~~~~~~~~~lViD 230 (936)
+|++||||||.|++.+++++ .++ ++.+..+.||........++.++++|+|+|||||.|++.+. .+.+.+++++|+|
T Consensus 158 lIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlD 237 (543)
T KOG0342|consen 158 LIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLD 237 (543)
T ss_pred EEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEee
Confidence 99999999999999999996 445 89999999999999888889889999999999999999875 4556778999999
Q ss_pred cchhhhcCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcC-CCEEEEeCCCCcc-cCCceEEEEEEeCchhhH
Q psy7557 231 EADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMV-NPVKVNVGSLDLA-ATHTVTQKIIILDEDEKK 308 (936)
Q Consensus 231 Eah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~-~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~k~ 308 (936)
|||+++++||+..+.+|...++..+|+++||||.|+.++++++-.+. +|+.+.+...... ....+.|.+++++...++
T Consensus 238 EADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f 317 (543)
T KOG0342|consen 238 EADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRF 317 (543)
T ss_pred cchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchH
Confidence 99999999999999999999999999999999999999999987664 5888887665433 335588889999988889
Q ss_pred HHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCC
Q psy7557 309 DWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDV 388 (936)
Q Consensus 309 ~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDi 388 (936)
..++.+++++.. ..++||||.|...+..+++.|+....+|..+||+++|..|..+..+|++.+..||||||++|||+|+
T Consensus 318 ~ll~~~LKk~~~-~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~ 396 (543)
T KOG0342|consen 318 SLLYTFLKKNIK-RYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDI 396 (543)
T ss_pred HHHHHHHHHhcC-CceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCC
Confidence 999999998743 3899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHH
Q psy7557 389 PDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEII 438 (936)
Q Consensus 389 p~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~ 438 (936)
|+|++||+||+|.+.++|+||+|||||.|+.|.+++++.+.+..+++.|.
T Consensus 397 P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 397 PDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred CCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh
Confidence 99999999999999999999999999999999999999999988766665
No 22
>KOG0339|consensus
Probab=100.00 E-value=7.4e-63 Score=511.23 Aligned_cols=383 Identities=38% Similarity=0.639 Sum_probs=353.3
Q ss_pred cccCccccCCccCChhhhCCCHHHHHHHHhhcCCceeeeecCCCCcCCCCCCCCCCCcCChHHhhcCCHHHHHHHHhCCC
Q psy7557 537 AREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSF 616 (936)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~f~~~~~l~~~~~~~l~~~g~ 616 (936)
....++.++||.++.++..+++.+.-.++...+ +.+. +...|.|+++|++ |+++..+..++.+..|
T Consensus 178 i~y~p~~kdfy~e~esI~gl~~~d~~~~r~~Ln-lrv~------------g~s~~rpvtsfeh-~gfDkqLm~airk~Ey 243 (731)
T KOG0339|consen 178 IDYEPFNKDFYEEHESIEGLTKMDVIDLRLTLN-LRVS------------GSSPPRPVTSFEH-FGFDKQLMTAIRKSEY 243 (731)
T ss_pred ccccccccccccChhhhhccccccchhhHhhhc-ceec------------cCCCCCCcchhhh-cCchHHHHHHHhhhhc
Confidence 356789999999999999999999888776654 3332 3467999999998 8899999999999999
Q ss_pred CCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhcc-C
Q psy7557 617 TTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID-Y 695 (936)
Q Consensus 617 ~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~-~ 695 (936)
++|||+|.+++|..++|+|++.+|-||||||.||++|++.|++.+.. ...+.+|..||+|||||||.|++.++++|+ .
T Consensus 244 ~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~e-L~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ 322 (731)
T KOG0339|consen 244 EKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPE-LKPGEGPIGVILVPTRELASQIFSEAKKFGKA 322 (731)
T ss_pred ccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhh-hcCCCCCeEEEEeccHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999988754 334789999999999999999999999994 6
Q ss_pred CCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHHHhhhcCCCc
Q psy7557 696 KGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNR 775 (936)
Q Consensus 696 ~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~~~~~ 775 (936)
.+++++++|||.+..+|...|+.++.|||||||||++++..+..++.++.||||||||+|+++||.++++.|...++|++
T Consensus 323 ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdr 402 (731)
T KOG0339|consen 323 YGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDR 402 (731)
T ss_pred ccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcC-cchhHHHHHHHHHhccCCCCcEEEEcCChHH
Q psy7557 776 QTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD-EDEKKDWLMEFFDNMDEERDKVMVFMGRKAS 854 (936)
Q Consensus 776 q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~ 854 (936)
|+++||||++..++.+++.++.+|+.+..+... .....+.|.+.+|. ...|..||...|-.. ...+++|||+..+..
T Consensus 403 QtllFsaTf~~kIe~lard~L~dpVrvVqg~vg-ean~dITQ~V~V~~s~~~Kl~wl~~~L~~f-~S~gkvlifVTKk~~ 480 (731)
T KOG0339|consen 403 QTLLFSATFKKKIEKLARDILSDPVRVVQGEVG-EANEDITQTVSVCPSEEKKLNWLLRHLVEF-SSEGKVLIFVTKKAD 480 (731)
T ss_pred eEEEeeccchHHHHHHHHHHhcCCeeEEEeehh-ccccchhheeeeccCcHHHHHHHHHHhhhh-ccCCcEEEEEeccCC
Confidence 999999999999999999999999999888655 34566788877776 456888988888776 345789999999999
Q ss_pred HHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhcc
Q psy7557 855 VSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934 (936)
Q Consensus 855 ~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaG 934 (936)
++.++..|...++.+..+||+|.|.+|.+++..|+.+...||||||+++||+|||++..|||||+-.+++.|.||+||+|
T Consensus 481 ~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtg 560 (731)
T KOG0339|consen 481 AEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTG 560 (731)
T ss_pred HHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q psy7557 935 EF 936 (936)
Q Consensus 935 R~ 936 (936)
|+
T Consensus 561 Ra 562 (731)
T KOG0339|consen 561 RA 562 (731)
T ss_pred cc
Confidence 96
No 23
>KOG0345|consensus
Probab=100.00 E-value=5e-62 Score=502.98 Aligned_cols=349 Identities=33% Similarity=0.534 Sum_probs=313.8
Q ss_pred hcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcH
Q psy7557 81 FQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTR 160 (936)
Q Consensus 81 ~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~ 160 (936)
.+|++++++++...||...||+|..+||.+++++|+++-|+||||||+||++|++..+........ .....+|||+|||
T Consensus 11 ~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~-~~~vgalIIsPTR 89 (567)
T KOG0345|consen 11 PPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTP-PGQVGALIISPTR 89 (567)
T ss_pred CCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCC-ccceeEEEecCcH
Confidence 346799999999999999999999999999999999999999999999999999988744322111 1134689999999
Q ss_pred HHHHHHHHHHHhcc--CCCCEEEEEeCCccchHHHHHhhc-CCcEEEeCCchhHHHHHcCC--cCCCCceEEEEccchhh
Q psy7557 161 ELATQIEREVNKID--YKGLKAVCVYGGKEIEPQLEKIRE-GCHILIATPGRLNDFVSRAS--IDLKAVSFVVLDEADRM 235 (936)
Q Consensus 161 ~La~Q~~~~~~~~~--~~~~~~~~~~gg~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~l~~~~--~~~~~~~~lViDEah~l 235 (936)
|||.||.+.+..|. ..++.+.++.||....+.....++ +++|+|||||||.+++.+.. +++..+.++|+||||++
T Consensus 90 ELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrL 169 (567)
T KOG0345|consen 90 ELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRL 169 (567)
T ss_pred HHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhH
Confidence 99999999999874 358899999999998888877665 48999999999999998853 45669999999999999
Q ss_pred hcCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCc-ccCCceEEEEEEeCchhhHHHHHHH
Q psy7557 236 LDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDL-AATHTVTQKIIILDEDEKKDWLMEF 314 (936)
Q Consensus 236 ~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~~ 314 (936)
+|+||...++.|+..+|..+++-+||||....+.++.+..++||+.+.+..... ..+..+...+..|...+|...++++
T Consensus 170 ldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~ 249 (567)
T KOG0345|consen 170 LDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHL 249 (567)
T ss_pred hcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887653 2456688889999999999999999
Q ss_pred HHhccCCCCcEEEEeCchHHHHHHHHHhhhc--CCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCc
Q psy7557 315 FDNMDEERDKVMVFMGRKASVSAMSSDLACQ--YRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLT 392 (936)
Q Consensus 315 l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~ 392 (936)
+... ..+++|||.+|...++..+..+... ...++.+||.|.+..|..+++.|+...-.+|+|||+++||||||+|+
T Consensus 250 L~~~--~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD 327 (567)
T KOG0345|consen 250 LNNN--KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGID 327 (567)
T ss_pred Hhcc--ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCce
Confidence 9984 6789999999999999998888754 57889999999999999999999998899999999999999999999
Q ss_pred EEEEecCCCCccccccCCCCcccCCCceeEEEEecccChh
Q psy7557 393 HVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWS 432 (936)
Q Consensus 393 ~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~ 432 (936)
+||+||+|.+...|+||+|||||.|+.|.|++|+.+.+..
T Consensus 328 ~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~a 367 (567)
T KOG0345|consen 328 LVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEA 367 (567)
T ss_pred EEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHH
Confidence 9999999999999999999999999999999999996543
No 24
>KOG0326|consensus
Probab=100.00 E-value=1.9e-63 Score=487.91 Aligned_cols=364 Identities=28% Similarity=0.486 Sum_probs=339.0
Q ss_pred ChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEE
Q psy7557 76 SFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLV 155 (936)
Q Consensus 76 ~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~li 155 (936)
.|++ +.+.++++..+.+.||+.|+|+|.++||.+++|+|+++.|..|+|||.+|.+|++..+... ...-+++|
T Consensus 86 efEd-~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~------~~~IQ~~i 158 (459)
T KOG0326|consen 86 EFED-YCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK------KNVIQAII 158 (459)
T ss_pred cHHH-hhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc------ccceeEEE
Confidence 5777 6899999999999999999999999999999999999999999999999999999887542 45678999
Q ss_pred EcCcHHHHHHHHHHHHhcc-CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchh
Q psy7557 156 MAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADR 234 (936)
Q Consensus 156 l~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~ 234 (936)
++||||||.|+.+.+..++ ..++++...+||.+..+..-++...++++|+||||++|++.++--.++++..+|+||||.
T Consensus 159 lVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADK 238 (459)
T KOG0326|consen 159 LVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADK 238 (459)
T ss_pred EeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhh
Confidence 9999999999999999885 568999999999999999999988999999999999999999999999999999999999
Q ss_pred hhcCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHH
Q psy7557 235 MLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEF 314 (936)
Q Consensus 235 l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 314 (936)
+++..|.+.+.+++..+|+++|++++|||+|-.+..+..+++.+|..|+.... -....+.|.+-++.+.+|...|..+
T Consensus 239 lLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~e--Ltl~GvtQyYafV~e~qKvhCLntL 316 (459)
T KOG0326|consen 239 LLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEE--LTLKGVTQYYAFVEERQKVHCLNTL 316 (459)
T ss_pred hhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhh--hhhcchhhheeeechhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999987653 3456799999999999999999888
Q ss_pred HHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEE
Q psy7557 315 FDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHV 394 (936)
Q Consensus 315 l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~V 394 (936)
+..+ .-.+.|||||+.+.++-+|..+.+.|+.+.++|+.|.|+.|++++.+|++|.++.|||||.+.||||+++|++|
T Consensus 317 fskL--qINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvV 394 (459)
T KOG0326|consen 317 FSKL--QINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVV 394 (459)
T ss_pred HHHh--cccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEE
Confidence 8876 56899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHhhcCCccch
Q psy7557 395 INYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEGGHESYM 450 (936)
Q Consensus 395 I~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 450 (936)
||||+|++.++|+||+||+||.|..|.|+.+++-+|...+..+.+-|...-..+|.
T Consensus 395 INFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~ 450 (459)
T KOG0326|consen 395 INFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPS 450 (459)
T ss_pred EecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCC
Confidence 99999999999999999999999999999999999988888888877665555553
No 25
>KOG0338|consensus
Probab=100.00 E-value=5.1e-63 Score=513.42 Aligned_cols=335 Identities=35% Similarity=0.527 Sum_probs=305.4
Q ss_pred CChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEE
Q psy7557 595 TSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVL 674 (936)
Q Consensus 595 ~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~l 674 (936)
.+|.+ ++|+.++++++..+||..|||||..+||..+-|+|+++||.||||||.||.+|+|+.++..+.. ....+||
T Consensus 181 ~sF~~-mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~---~~~TRVL 256 (691)
T KOG0338|consen 181 ESFQS-MNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK---VAATRVL 256 (691)
T ss_pred hhHHh-cccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc---CcceeEE
Confidence 46776 7999999999999999999999999999999999999999999999999999999999875532 4567999
Q ss_pred EEecCHHHHHHHHHHHHhcc-CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcC-CCCCCCceEEEEccc
Q psy7557 675 VMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRA-SIDLKAVSFVVLDEA 752 (936)
Q Consensus 675 il~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~-~~~~~~i~~lViDEa 752 (936)
||+||||||.|++...+++. +..+.++.+.||.+...|...|+.++||+|+|||||.+++++. .++++++..+|+|||
T Consensus 257 VL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEA 336 (691)
T KOG0338|consen 257 VLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEA 336 (691)
T ss_pred EEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechH
Confidence 99999999999999999884 5679999999999999999999999999999999999999886 678999999999999
Q ss_pred chhccCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcC---cchhHH
Q psy7557 753 DRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD---EDEKKD 829 (936)
Q Consensus 753 h~l~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~k~~ 829 (936)
|+|++.||..++..|...++.++|+++|||||+..+.+++...+.+|+.+.+++...... .+.|.++.+. +..+..
T Consensus 337 DRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~-~LtQEFiRIR~~re~dRea 415 (691)
T KOG0338|consen 337 DRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAP-KLTQEFIRIRPKREGDREA 415 (691)
T ss_pred HHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccch-hhhHHHheeccccccccHH
Confidence 999999999999999999999999999999999999999999999999999988664443 3444444332 445667
Q ss_pred HHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCC
Q psy7557 830 WLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVP 909 (936)
Q Consensus 830 ~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip 909 (936)
.+..++... ...++|||+.|+..|..+.-.|.-.|..++-+||.|+|.+|...++.|++++++||||||+++||+||+
T Consensus 416 ~l~~l~~rt--f~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~ 493 (691)
T KOG0338|consen 416 MLASLITRT--FQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIE 493 (691)
T ss_pred HHHHHHHHh--cccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCcc
Confidence 777777766 367899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 910 DLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 910 ~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
+|..||||++|.++..|+||+|||.|+
T Consensus 494 gV~tVINy~mP~t~e~Y~HRVGRTARA 520 (691)
T KOG0338|consen 494 GVQTVINYAMPKTIEHYLHRVGRTARA 520 (691)
T ss_pred ceeEEEeccCchhHHHHHHHhhhhhhc
Confidence 999999999999999999999999875
No 26
>KOG0328|consensus
Probab=100.00 E-value=2.8e-62 Score=472.07 Aligned_cols=335 Identities=33% Similarity=0.592 Sum_probs=310.4
Q ss_pred CCcCChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCC
Q psy7557 592 NPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGP 671 (936)
Q Consensus 592 ~~~~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~ 671 (936)
.++.+|++ .++.+++++.++..||++|+.+|+.|++.+++|+|++++|.+|+|||.+|.+.++..+... .+..
T Consensus 24 ~v~~~F~~-Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~------~r~t 96 (400)
T KOG0328|consen 24 KVIPTFDD-MGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS------VRET 96 (400)
T ss_pred ccccchhh-cCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc------ccee
Confidence 56778988 7999999999999999999999999999999999999999999999999998887655332 3457
Q ss_pred EEEEEecCHHHHHHHHHHHHhcc-CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEc
Q psy7557 672 SVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLD 750 (936)
Q Consensus 672 ~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViD 750 (936)
++||++||||||.|+.+.+..++ +.++.+..+.||.+..+...++..|.+++.+|||++.+++++..+..+.++++|+|
T Consensus 97 Q~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLD 176 (400)
T KOG0328|consen 97 QALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLD 176 (400)
T ss_pred eEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEec
Confidence 89999999999999999999995 67899999999999999999999999999999999999999999999999999999
Q ss_pred ccchhccCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcC-cchhHH
Q psy7557 751 EADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD-EDEKKD 829 (936)
Q Consensus 751 Eah~l~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~k~~ 829 (936)
|||.|++.||..++-.+.+.+||+.|++++|||+|.++.+....|+.+|+.+.+...+..... ++++++-++ +..|++
T Consensus 177 EaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEg-IKqf~v~ve~EewKfd 255 (400)
T KOG0328|consen 177 EADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEG-IKQFFVAVEKEEWKFD 255 (400)
T ss_pred cHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhh-hhhheeeechhhhhHh
Confidence 999999999999999999999999999999999999999999999999999999887765444 556555554 556999
Q ss_pred HHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCC
Q psy7557 830 WLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVP 909 (936)
Q Consensus 830 ~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip 909 (936)
.|+++...+ .-.+.+|||||++.++.|.+.++...+.+.++||+|.+++|+.+.+.|++|+.+||++||+.+||+|+|
T Consensus 256 tLcdLYd~L--tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~ 333 (400)
T KOG0328|consen 256 TLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQ 333 (400)
T ss_pred HHHHHhhhh--ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcc
Confidence 999998876 346789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 910 DLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 910 ~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
.|++|||||+|.+.+.||||+||.||+
T Consensus 334 qVslviNYDLP~nre~YIHRIGRSGRF 360 (400)
T KOG0328|consen 334 QVSLVINYDLPNNRELYIHRIGRSGRF 360 (400)
T ss_pred eeEEEEecCCCccHHHHhhhhcccccc
Confidence 999999999999999999999999996
No 27
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-61 Score=552.09 Aligned_cols=335 Identities=44% Similarity=0.721 Sum_probs=308.6
Q ss_pred CChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEE
Q psy7557 595 TSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVL 674 (936)
Q Consensus 595 ~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~l 674 (936)
.+|++ +++++.++++|.++||..|||||.++||.++.|+|+++.|+||||||+||++|++..+.... ......+|
T Consensus 29 ~~F~~-l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~----~~~~~~aL 103 (513)
T COG0513 29 PEFAS-LGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV----ERKYVSAL 103 (513)
T ss_pred CCHhh-cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccc----ccCCCceE
Confidence 67887 78999999999999999999999999999999999999999999999999999999865321 11111199
Q ss_pred EEecCHHHHHHHHHHHHhccC-C-CCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEccc
Q psy7557 675 VMAPTRELATQIEREVNKIDY-K-GLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEA 752 (936)
Q Consensus 675 il~Pt~~La~Q~~~~~~~~~~-~-~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEa 752 (936)
|++||||||.|+++.+..+.. . ++++++++||.+...+...++.++|||||||+|+.+++.++.+.++.+.++|+|||
T Consensus 104 il~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEA 183 (513)
T COG0513 104 ILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEA 183 (513)
T ss_pred EECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccH
Confidence 999999999999999999853 3 68999999999999999999999999999999999999999999999999999999
Q ss_pred chhccCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCc-ccCCceEEEEEEcCcch-hHHH
Q psy7557 753 DRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDL-AATHTVTQKIIILDEDE-KKDW 830 (936)
Q Consensus 753 h~l~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~-k~~~ 830 (936)
|+|+++||.+.+..|...+++++|+++||||+|..+..++..++.+|..+.+..... .....+.|.+..+.... |...
T Consensus 184 DrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~ 263 (513)
T COG0513 184 DRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLEL 263 (513)
T ss_pred hhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888874332 25677899999998776 9999
Q ss_pred HHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCC
Q psy7557 831 LMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPD 910 (936)
Q Consensus 831 l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~ 910 (936)
|..++.... ..++||||+|+..|+.++..|...|+.+..+||+|+|++|..+++.|++|+.+||||||+++||||+|+
T Consensus 264 L~~ll~~~~--~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~ 341 (513)
T COG0513 264 LLKLLKDED--EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPD 341 (513)
T ss_pred HHHHHhcCC--CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccc
Confidence 999988763 347999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 911 LTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 911 v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
+++|||||+|.+.++|+||+|||||+
T Consensus 342 v~~VinyD~p~~~e~yvHRiGRTgRa 367 (513)
T COG0513 342 VSHVINYDLPLDPEDYVHRIGRTGRA 367 (513)
T ss_pred cceeEEccCCCCHHHheeccCccccC
Confidence 99999999999999999999999996
No 28
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=9.2e-61 Score=542.27 Aligned_cols=367 Identities=38% Similarity=0.564 Sum_probs=328.4
Q ss_pred ccChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCC-CCCCCCE
Q psy7557 74 VTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI-SERAGPS 152 (936)
Q Consensus 74 ~~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~-~~~~~~~ 152 (936)
-.+|++ +++++.++++|.+.||..|||+|.+|||.+++|+|++++||||||||++|++|++..+....... ....+++
T Consensus 7 ~~~f~~-~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~ 85 (423)
T PRK04837 7 EQKFSD-FALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPR 85 (423)
T ss_pred CCCHhh-CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCce
Confidence 357888 79999999999999999999999999999999999999999999999999999998886533211 1134689
Q ss_pred EEEEcCcHHHHHHHHHHHHhcc-CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEcc
Q psy7557 153 VLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDE 231 (936)
Q Consensus 153 ~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDE 231 (936)
+|||+||+|||.|+++.+..+. ..++++..++||.....+...+..+++|+|+||++|.+++.++.+.+++++++||||
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDE 165 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDE 165 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEec
Confidence 9999999999999999999874 568999999999988888888888899999999999999998889999999999999
Q ss_pred chhhhcCCCHHHHHHHHhhcCC--CCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHH
Q psy7557 232 ADRMLDLGFEPQINKTSIYINP--NRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKD 309 (936)
Q Consensus 232 ah~l~~~~~~~~~~~i~~~~~~--~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~ 309 (936)
||+++++||...+..+...++. .++.++||||++..+..++..++.+|..+.+.... .....+.+.+.......|..
T Consensus 166 ad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~-~~~~~i~~~~~~~~~~~k~~ 244 (423)
T PRK04837 166 ADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQ-KTGHRIKEELFYPSNEEKMR 244 (423)
T ss_pred HHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCC-cCCCceeEEEEeCCHHHHHH
Confidence 9999999999999999988874 56789999999999999999999999888776544 23455677777777778888
Q ss_pred HHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCC
Q psy7557 310 WLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVP 389 (936)
Q Consensus 310 ~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip 389 (936)
.+..++... ...++||||+++..|+.+++.|...++++..+||+|++.+|..+++.|++|+++|||||++++||||+|
T Consensus 245 ~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip 322 (423)
T PRK04837 245 LLQTLIEEE--WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIP 322 (423)
T ss_pred HHHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCcc
Confidence 888887653 467999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHhhc
Q psy7557 390 DLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEG 444 (936)
Q Consensus 390 ~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 444 (936)
++++|||||+|.+..+|+||+|||||+|+.|.|++|+++.|...+..+.+.+...
T Consensus 323 ~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~ 377 (423)
T PRK04837 323 AVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHS 377 (423)
T ss_pred ccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999888777776665443
No 29
>KOG0343|consensus
Probab=100.00 E-value=6.5e-62 Score=509.59 Aligned_cols=363 Identities=32% Similarity=0.496 Sum_probs=330.7
Q ss_pred ccChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEE
Q psy7557 74 VTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSV 153 (936)
Q Consensus 74 ~~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~ 153 (936)
+..|++ |+++...+++|+..+|..||.+|.++||.++.|+|+|+.|.||||||+||++|++.++... .|....|--+
T Consensus 68 ~~kF~d-lpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~--kWs~~DGlGa 144 (758)
T KOG0343|consen 68 IKKFAD-LPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRL--KWSPTDGLGA 144 (758)
T ss_pred hhhHHh-CCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHc--CCCCCCCcee
Confidence 346877 7999999999999999999999999999999999999999999999999999999988643 3455778889
Q ss_pred EEEcCcHHHHHHHHHHHHhcc-CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcC-CcCCCCceEEEEcc
Q psy7557 154 LVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRA-SIDLKAVSFVVLDE 231 (936)
Q Consensus 154 lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-~~~~~~~~~lViDE 231 (936)
|||+||||||.|+++.+.+.+ ...+.++.+.||.+......++ ++++|+|||||||+.+|... .++.+++.+||+||
T Consensus 145 lIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDE 223 (758)
T KOG0343|consen 145 LIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDE 223 (758)
T ss_pred EEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEecc
Confidence 999999999999999999986 5789999999999987776666 45999999999999999775 67788999999999
Q ss_pred chhhhcCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCC-cccCCceEEEEEEeCchhhHHH
Q psy7557 232 ADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLD-LAATHTVTQKIIILDEDEKKDW 310 (936)
Q Consensus 232 ah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~k~~~ 310 (936)
||+|+||||...+..|+..+|+.+|+++||||.+..+.++++..+.||..|.+.... ...+.++.|.++++...+|++.
T Consensus 224 ADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~ 303 (758)
T KOG0343|consen 224 ADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDM 303 (758)
T ss_pred HHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHH
Confidence 999999999999999999999999999999999999999999999999999887433 5677889999999999999999
Q ss_pred HHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhc--CCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCC
Q psy7557 311 LMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQ--YRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDV 388 (936)
Q Consensus 311 l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDi 388 (936)
|+.++..+ ...+.|||+.|.+.+..+++.++.. |+++..+||.|+|..|..++..|-..+.-||+|||+++||+|+
T Consensus 304 L~sFI~sh--lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDF 381 (758)
T KOG0343|consen 304 LWSFIKSH--LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDF 381 (758)
T ss_pred HHHHHHhc--cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCC
Confidence 99999987 4679999999999999999999864 7888999999999999999999999999999999999999999
Q ss_pred CCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHhhcC
Q psy7557 389 PDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEGG 445 (936)
Q Consensus 389 p~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~ 445 (936)
|.|++||++|+|.++++|+||+||++|.+..|.+++++++++... ++..|+..+
T Consensus 382 paVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~---~l~~Lq~k~ 435 (758)
T KOG0343|consen 382 PAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEA---MLKKLQKKK 435 (758)
T ss_pred cccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHH---HHHHHHHcC
Confidence 999999999999999999999999999999999999999998443 344444443
No 30
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=2.2e-60 Score=547.93 Aligned_cols=386 Identities=30% Similarity=0.499 Sum_probs=339.6
Q ss_pred hhcccCccccCCccCChhhhC-CCHHHHHHHHhhcCCceeeeecCCCCcCCCCCCCCCCCcCChHHhhcCCHHHHHHHHh
Q psy7557 535 KWAREPKIIKNVYKEDPEVAN-MTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLEN 613 (936)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~f~~~~~l~~~~~~~l~~ 613 (936)
+|...+++.+++|..+++... ++.++++.+++..+ +.+.+ ..+|.|+.+|++ +++++.+++.|.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-i~~~g------------~~~p~pi~~f~~-~~l~~~l~~~L~~ 138 (518)
T PLN00206 73 KPKRLPATDECFYVRDPGSTSGLSSSQAELLRRKLE-IHVKG------------EAVPPPILSFSS-CGLPPKLLLNLET 138 (518)
T ss_pred chhhcCCcCCcCCccCcchhccCCHHHHHHHHHHCC-CEecC------------CCCCchhcCHHh-CCCCHHHHHHHHH
Confidence 345567778889998877754 99999999988764 44432 257899999998 6899999999999
Q ss_pred CCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCC-CccCCCCEEEEEecCHHHHHHHHHHHHh
Q psy7557 614 LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTP-ISERAGPSVLVMAPTRELATQIEREVNK 692 (936)
Q Consensus 614 ~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~-~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 692 (936)
.||..|||+|.+|||.+++|+|++++||||||||++|++|++.++...... .....++++|||+||||||.|+.+.++.
T Consensus 139 ~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~ 218 (518)
T PLN00206 139 AGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKV 218 (518)
T ss_pred cCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999887543211 1223678999999999999999999988
Q ss_pred cc-CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHHHhhhc
Q psy7557 693 ID-YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYI 771 (936)
Q Consensus 693 ~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~ 771 (936)
+. ..++++..++||.....+...+..+++|+|+||++|.+++.++...++++++|||||||+|+++||...+..+...+
T Consensus 219 l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l 298 (518)
T PLN00206 219 LGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQAL 298 (518)
T ss_pred HhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhC
Confidence 74 45688899999999998888888999999999999999999988899999999999999999999999999988877
Q ss_pred CCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCC
Q psy7557 772 NPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGR 851 (936)
Q Consensus 772 ~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s 851 (936)
+..|++++|||++..+..++..++.++..+.++... .....+.+.+..+....+...+.+++.......+++||||++
T Consensus 299 -~~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~-~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s 376 (518)
T PLN00206 299 -SQPQVLLFSATVSPEVEKFASSLAKDIILISIGNPN-RPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSS 376 (518)
T ss_pred -CCCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCC-CCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCC
Confidence 468999999999999999999999999988876654 334556777778888888888888887665556789999999
Q ss_pred hHHHHHHHHHHHh-cCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEEccCCCChhhhHhhh
Q psy7557 852 KASVSAMSSDLAC-QYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRV 930 (936)
Q Consensus 852 ~~~~~~l~~~L~~-~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~ 930 (936)
+..++.++..|.. .+..+..+||+|++.+|..+++.|++|+.+|||||++++||||+|++++||+||+|.++.+|+||+
T Consensus 377 ~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRi 456 (518)
T PLN00206 377 RLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQI 456 (518)
T ss_pred chhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhc
Confidence 9999999999975 588999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCC
Q psy7557 931 GRTGEF 936 (936)
Q Consensus 931 GRaGR~ 936 (936)
|||||+
T Consensus 457 GRaGR~ 462 (518)
T PLN00206 457 GRASRM 462 (518)
T ss_pred cccccC
Confidence 999995
No 31
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=3.7e-60 Score=540.21 Aligned_cols=365 Identities=38% Similarity=0.644 Sum_probs=328.5
Q ss_pred ChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEE
Q psy7557 76 SFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLV 155 (936)
Q Consensus 76 ~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~li 155 (936)
+|++ +++++.++++|.++||.+|||+|.+|||.+++|+|++++||||||||++|++|++..+............+++||
T Consensus 2 ~f~~-l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLi 80 (456)
T PRK10590 2 SFDS-LGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALI 80 (456)
T ss_pred CHHH-cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEE
Confidence 5777 689999999999999999999999999999999999999999999999999999988754322212233568999
Q ss_pred EcCcHHHHHHHHHHHHhcc-CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchh
Q psy7557 156 MAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADR 234 (936)
Q Consensus 156 l~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~ 234 (936)
|+||++||.|+.+.++.+. ..++++..++||.+...+...+..+++|+|+||++|.+++....+.++++++|||||||+
T Consensus 81 l~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ 160 (456)
T PRK10590 81 LTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADR 160 (456)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHH
Confidence 9999999999999999864 568899999999998888888888899999999999999988888899999999999999
Q ss_pred hhcCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHH
Q psy7557 235 MLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEF 314 (936)
Q Consensus 235 l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 314 (936)
|++++|...+..++..++..+|+++||||++..+..++..++.+|..+.+.... .....+.+.+..++...+...+..+
T Consensus 161 ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~l 239 (456)
T PRK10590 161 MLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRN-TASEQVTQHVHFVDKKRKRELLSQM 239 (456)
T ss_pred HhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEeccc-ccccceeEEEEEcCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888765543 3345677778788877777777766
Q ss_pred HHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEE
Q psy7557 315 FDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHV 394 (936)
Q Consensus 315 l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~V 394 (936)
+.. ....++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++|
T Consensus 240 ~~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~V 317 (456)
T PRK10590 240 IGK--GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHV 317 (456)
T ss_pred HHc--CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEE
Confidence 654 345789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHhhc
Q psy7557 395 INYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEG 444 (936)
Q Consensus 395 I~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 444 (936)
||||+|.+..+|+||+|||||+|..|.|++|++.+|...++.+.+.+...
T Consensus 318 I~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~ 367 (456)
T PRK10590 318 VNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367 (456)
T ss_pred EEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999998888888876644
No 32
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=5.8e-60 Score=541.76 Aligned_cols=358 Identities=35% Similarity=0.578 Sum_probs=329.1
Q ss_pred cChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEE
Q psy7557 75 TSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVL 154 (936)
Q Consensus 75 ~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~l 154 (936)
.+|++ +++++.++++|.++||.+|||+|.+|||.+++|+|++++||||||||++|++|++..+... ..++++|
T Consensus 4 ~~f~~-l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~------~~~~~~l 76 (460)
T PRK11776 4 TAFST-LPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK------RFRVQAL 76 (460)
T ss_pred CChhh-cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc------cCCceEE
Confidence 46877 6899999999999999999999999999999999999999999999999999999887432 2356899
Q ss_pred EEcCcHHHHHHHHHHHHhcc--CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccc
Q psy7557 155 VMAPTRELATQIEREVNKID--YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEA 232 (936)
Q Consensus 155 il~Pt~~La~Q~~~~~~~~~--~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEa 232 (936)
|++||++||.|+.+.++.+. ..++++..++||.+...+...+..+++|+|+||++|.+++.++.+.++++++||+|||
T Consensus 77 il~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEa 156 (460)
T PRK11776 77 VLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEA 156 (460)
T ss_pred EEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECH
Confidence 99999999999999999874 2478999999999999998888889999999999999999998889999999999999
Q ss_pred hhhhcCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHH
Q psy7557 233 DRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLM 312 (936)
Q Consensus 233 h~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 312 (936)
|+|+++||...+..++..+++.+|+++||||+|+.+..++..++.+|..+.+.... ....+.+.++.+....|...+.
T Consensus 157 d~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~~~~~k~~~l~ 234 (460)
T PRK11776 157 DRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH--DLPAIEQRFYEVSPDERLPALQ 234 (460)
T ss_pred HHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC--CCCCeeEEEEEeCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988876543 2455888888888888988888
Q ss_pred HHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCc
Q psy7557 313 EFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLT 392 (936)
Q Consensus 313 ~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~ 392 (936)
.++... ...++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|+.+|||||++++||+|+|+++
T Consensus 235 ~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~ 312 (460)
T PRK11776 235 RLLLHH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALE 312 (460)
T ss_pred HHHHhc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCC
Confidence 888764 457899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHhh
Q psy7557 393 HVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEE 443 (936)
Q Consensus 393 ~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 443 (936)
+||+||+|.+..+|+||+|||||+|..|.|++|++++|...+..+.+.+..
T Consensus 313 ~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~ 363 (460)
T PRK11776 313 AVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGR 363 (460)
T ss_pred eEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999998877777766654
No 33
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.6e-59 Score=545.10 Aligned_cols=359 Identities=36% Similarity=0.604 Sum_probs=327.6
Q ss_pred cChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEE
Q psy7557 75 TSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVL 154 (936)
Q Consensus 75 ~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~l 154 (936)
.+|.+ +++++.++++|.++||.+|||+|.++||.++.|+|+|++||||||||++|++|++..+... ..++++|
T Consensus 6 ~~f~~-l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~------~~~~~~L 78 (629)
T PRK11634 6 TTFAD-LGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE------LKAPQIL 78 (629)
T ss_pred CCHhh-cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc------cCCCeEE
Confidence 35887 6899999999999999999999999999999999999999999999999999999876431 3467999
Q ss_pred EEcCcHHHHHHHHHHHHhcc--CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccc
Q psy7557 155 VMAPTRELATQIEREVNKID--YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEA 232 (936)
Q Consensus 155 il~Pt~~La~Q~~~~~~~~~--~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEa 232 (936)
||+||++||.|+++.+..+. ..++.+..++||.....+...+..+++|+|+||+++.+++.++.+.++++++||||||
T Consensus 79 IL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEA 158 (629)
T PRK11634 79 VLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEA 158 (629)
T ss_pred EEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccH
Confidence 99999999999999999874 2478999999999998888888889999999999999999999899999999999999
Q ss_pred hhhhcCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHH
Q psy7557 233 DRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLM 312 (936)
Q Consensus 233 h~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 312 (936)
|.|++++|...+..++..++...|+++||||+|+.+..+++.++.+|..+.+.... .....+.+.+..+....|...|.
T Consensus 159 d~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~-~~~~~i~q~~~~v~~~~k~~~L~ 237 (629)
T PRK11634 159 DEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSV-TTRPDISQSYWTVWGMRKNEALV 237 (629)
T ss_pred HHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCcc-ccCCceEEEEEEechhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999888776544 23456778888888888888888
Q ss_pred HHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCc
Q psy7557 313 EFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLT 392 (936)
Q Consensus 313 ~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~ 392 (936)
.++... ...++||||+++..+..+++.|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|+
T Consensus 238 ~~L~~~--~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~ 315 (629)
T PRK11634 238 RFLEAE--DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERIS 315 (629)
T ss_pred HHHHhc--CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCC
Confidence 888764 457899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHhh
Q psy7557 393 HVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEE 443 (936)
Q Consensus 393 ~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 443 (936)
+|||||+|.+.++|+||+|||||+|+.|.|++|+++.|...++.+.+.+..
T Consensus 316 ~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~ 366 (629)
T PRK11634 316 LVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 (629)
T ss_pred EEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999887777776665543
No 34
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.4e-59 Score=540.36 Aligned_cols=366 Identities=37% Similarity=0.553 Sum_probs=326.4
Q ss_pred cChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCC-CCCCCCCEE
Q psy7557 75 TSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTP-ISERAGPSV 153 (936)
Q Consensus 75 ~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~-~~~~~~~~~ 153 (936)
.+|++ +++++.++++|.+.||.+|||+|.++||.+++|+|++++||||||||++|++|++..+...... .....++++
T Consensus 9 ~~f~~-l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~ra 87 (572)
T PRK04537 9 LTFSS-FDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRA 87 (572)
T ss_pred CChhh-cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 46887 7899999999999999999999999999999999999999999999999999999887543211 011235899
Q ss_pred EEEcCcHHHHHHHHHHHHhcc-CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcC-CcCCCCceEEEEcc
Q psy7557 154 LVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRA-SIDLKAVSFVVLDE 231 (936)
Q Consensus 154 lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-~~~~~~~~~lViDE 231 (936)
|||+||+|||.|+++.+.+|. ..++++..++||.....+...+..+++|+|+||++|.+++.+. .+.+..+++|||||
T Consensus 88 LIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDE 167 (572)
T PRK04537 88 LILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDE 167 (572)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecC
Confidence 999999999999999999975 5689999999999988888888888999999999999998765 56789999999999
Q ss_pred chhhhcCCCHHHHHHHHhhcCC--CCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHH
Q psy7557 232 ADRMLDLGFEPQINKTSIYINP--NRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKD 309 (936)
Q Consensus 232 ah~l~~~~~~~~~~~i~~~~~~--~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~ 309 (936)
||+|++++|...+..++..++. .+|+++||||++..+..+...++.+|..+.+.... .....+.+.+......+|..
T Consensus 168 Ah~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~k~~ 246 (572)
T PRK04537 168 ADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETET-ITAARVRQRIYFPADEEKQT 246 (572)
T ss_pred HHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEecccc-ccccceeEEEEecCHHHHHH
Confidence 9999999999999999998876 78999999999999999999999998777665443 23456778888888888888
Q ss_pred HHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCC
Q psy7557 310 WLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVP 389 (936)
Q Consensus 310 ~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip 389 (936)
.+..++... ...++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|
T Consensus 247 ~L~~ll~~~--~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip 324 (572)
T PRK04537 247 LLLGLLSRS--EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHID 324 (572)
T ss_pred HHHHHHhcc--cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCcc
Confidence 888877653 467999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHhhc
Q psy7557 390 DLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEG 444 (936)
Q Consensus 390 ~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 444 (936)
+|++|||||+|.+..+|+||+|||||.|..|.|++|+++.+...+.++.+.+...
T Consensus 325 ~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~ 379 (572)
T PRK04537 325 GVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQK 379 (572)
T ss_pred CCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999998888888887766543
No 35
>KOG0348|consensus
Probab=100.00 E-value=2.2e-60 Score=496.72 Aligned_cols=363 Identities=32% Similarity=0.519 Sum_probs=317.5
Q ss_pred CcccChHHhhcCCHHHHHHHHh-CCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCC
Q psy7557 72 NPVTSFKQAFQHYPEILRQLEN-LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAG 150 (936)
Q Consensus 72 ~p~~~f~~~~~~~~~l~~~l~~-~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~ 150 (936)
---..|.. +++++.+...|.+ +++..||.+|.++||.+++|+|+++.|+||||||++|++|+++.+........+..|
T Consensus 133 fts~~f~~-LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G 211 (708)
T KOG0348|consen 133 FTSAAFAS-LGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDG 211 (708)
T ss_pred cccccchh-cCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCC
Confidence 33456777 7999999999976 899999999999999999999999999999999999999999999877666667889
Q ss_pred CEEEEEcCcHHHHHHHHHHHHhcc--CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHc-CCcCCCCceEE
Q psy7557 151 PSVLVMAPTRELATQIEREVNKID--YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSR-ASIDLKAVSFV 227 (936)
Q Consensus 151 ~~~lil~Pt~~La~Q~~~~~~~~~--~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~~~l 227 (936)
+.+|||+||||||.|+|+.++++. ..=+..+.+.||........++++|++|+|+|||||.|++.+ ..+.++++++|
T Consensus 212 ~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwl 291 (708)
T KOG0348|consen 212 PYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWL 291 (708)
T ss_pred ceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEE
Confidence 999999999999999999999973 223445667899999999999999999999999999999987 46789999999
Q ss_pred EEccchhhhcCCCHHHHHHHHhhcC-------------CCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCC-------
Q psy7557 228 VLDEADRMLDLGFEPQINKTSIYIN-------------PNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSL------- 287 (936)
Q Consensus 228 ViDEah~l~~~~~~~~~~~i~~~~~-------------~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~------- 287 (936)
|+||||++++.||+..+..|+..+. +..|.+++|||+...+.+++..-+.||+.|..+..
T Consensus 292 VlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~ 371 (708)
T KOG0348|consen 292 VLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPK 371 (708)
T ss_pred EecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcc
Confidence 9999999999999999999988762 23688999999999999999999999998872211
Q ss_pred -----------------CcccCCceEEEEEEeCchhhHHHHHHHHHhcc--CCCCcEEEEeCchHHHHHHHHHhhhc---
Q psy7557 288 -----------------DLAATHTVTQKIIILDEDEKKDWLMEFFDNMD--EERDKVMVFMGRKASVSAMSSDLACQ--- 345 (936)
Q Consensus 288 -----------------~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~--~~~~~~iVF~~~~~~~~~l~~~L~~~--- 345 (936)
....+..+.|.+.+++..-+...|..++.+.- ....++|||+.+.+.++.-+..|.+.
T Consensus 372 ~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~ 451 (708)
T KOG0348|consen 372 DKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLS 451 (708)
T ss_pred hhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhc
Confidence 12345667888999999888888888776642 33458999999999999888877642
Q ss_pred -------------------CCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEecCCCCcccc
Q psy7557 346 -------------------YRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEY 406 (936)
Q Consensus 346 -------------------~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y 406 (936)
+.+..-+||+|+|++|..+++.|+...-.||.|||+++||+|+|+|++||+||+|.+.++|
T Consensus 452 ~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~ady 531 (708)
T KOG0348|consen 452 HLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADY 531 (708)
T ss_pred ccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHH
Confidence 2345669999999999999999999998999999999999999999999999999999999
Q ss_pred ccCCCCcccCCCceeEEEEecccChhhHH
Q psy7557 407 VHRVGRTGRAGKSGESITLMTRKDWSHAH 435 (936)
Q Consensus 407 ~qr~GRagR~g~~g~~~~~~~~~~~~~~~ 435 (936)
+||+|||+|+|..|.+++|+.+.+.+...
T Consensus 532 lHRvGRTARaG~kG~alLfL~P~Eaey~~ 560 (708)
T KOG0348|consen 532 LHRVGRTARAGEKGEALLFLLPSEAEYVN 560 (708)
T ss_pred HHHhhhhhhccCCCceEEEecccHHHHHH
Confidence 99999999999999999999999987433
No 36
>KOG0346|consensus
Probab=100.00 E-value=1.5e-59 Score=479.89 Aligned_cols=368 Identities=29% Similarity=0.456 Sum_probs=335.0
Q ss_pred cChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEE
Q psy7557 75 TSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVL 154 (936)
Q Consensus 75 ~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~l 154 (936)
.+|++ |++++.+++++.+.||.+||-+|+.|||.++.|+|+++.|.||||||++|++|+++.++..........++.++
T Consensus 19 ktFe~-~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~ 97 (569)
T KOG0346|consen 19 KTFEE-FGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAV 97 (569)
T ss_pred ccHHH-hCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeE
Confidence 47988 89999999999999999999999999999999999999999999999999999999988765444567799999
Q ss_pred EEcCcHHHHHHHHHHHHhc---cCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCC-cCCCCceEEEEc
Q psy7557 155 VMAPTRELATQIEREVNKI---DYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRAS-IDLKAVSFVVLD 230 (936)
Q Consensus 155 il~Pt~~La~Q~~~~~~~~---~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~-~~~~~~~~lViD 230 (936)
|++||||||+|++..+.++ +...++++-+...++.......+...++|+|+||+++.+++..+. ..+..+.++|+|
T Consensus 98 iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvD 177 (569)
T KOG0346|consen 98 ILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVD 177 (569)
T ss_pred EEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEec
Confidence 9999999999999999886 455677777776666666666777779999999999999998886 668899999999
Q ss_pred cchhhhcCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHH
Q psy7557 231 EADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDW 310 (936)
Q Consensus 231 Eah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 310 (936)
|||.++..||+..+.++...+|+..|.++||||+..++..+-+.++.+|+.+.....+...+..+.|..+.|++.+|+-.
T Consensus 178 EADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKfll 257 (569)
T KOG0346|consen 178 EADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLL 257 (569)
T ss_pred hhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999988888778899999999999999988
Q ss_pred HHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEec----------
Q psy7557 311 LMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATD---------- 380 (936)
Q Consensus 311 l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~---------- 380 (936)
++.+++-. --.++.|||+|+.+.|..+--.|...|++.+.+.|.|+...|..++++|..|.++++||||
T Consensus 258 lyallKL~-LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~ee 336 (569)
T KOG0346|consen 258 LYALLKLR-LIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEE 336 (569)
T ss_pred HHHHHHHH-HhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhc
Confidence 88877642 3478999999999999999999999999999999999999999999999999999999999
Q ss_pred -------------------------ccccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccChhhHH
Q psy7557 381 -------------------------VASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAH 435 (936)
Q Consensus 381 -------------------------~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~ 435 (936)
-++||||+..|.+|+|||+|.++..|+||+|||+|++++|.+++|+.+.+.....
T Consensus 337 e~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~ 416 (569)
T KOG0346|consen 337 EVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKE 416 (569)
T ss_pred cccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhh
Confidence 2469999999999999999999999999999999999999999999999877666
Q ss_pred hHHHHHhhc
Q psy7557 436 EIIPILEEG 444 (936)
Q Consensus 436 ~l~~~l~~~ 444 (936)
.+.+.+...
T Consensus 417 ~le~~~~d~ 425 (569)
T KOG0346|consen 417 SLESILKDE 425 (569)
T ss_pred HHHHHHhhH
Confidence 666666543
No 37
>KOG0335|consensus
Probab=100.00 E-value=1.1e-59 Score=500.47 Aligned_cols=350 Identities=40% Similarity=0.676 Sum_probs=317.4
Q ss_pred CCCCCCCCCcCChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCC
Q psy7557 585 NPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTP 664 (936)
Q Consensus 585 ~~~~~~p~~~~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~ 664 (936)
..+...|.++..|.+ -.+...+..+++..||..|||+|+.+||.+..|+|++++|+||||||.||++|++.+++.....
T Consensus 64 ~~G~~~p~~i~~f~~-~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~ 142 (482)
T KOG0335|consen 64 VSGRDVPPHIPTFDE-AILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPE 142 (482)
T ss_pred ccCCccCCCcccccc-cchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcc
Confidence 345677888889886 4677888999999999999999999999999999999999999999999999999988765321
Q ss_pred ----CccCCCCEEEEEecCHHHHHHHHHHHHhcc-CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCC
Q psy7557 665 ----ISERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASI 739 (936)
Q Consensus 665 ----~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~ 739 (936)
......|.+||++||||||.|++++.+++. ..+++++..|||.+...+...+.++|||+|||||+|.+++..+.+
T Consensus 143 ~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i 222 (482)
T KOG0335|consen 143 DRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKI 222 (482)
T ss_pred cCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhccee
Confidence 111236999999999999999999999985 468899999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEcccchhcc-CCCHHHHHHHhhhcC----CCceEEEEEecCChHHHHHHHHhcCC-CeEEEeCCCCcccCC
Q psy7557 740 DLKAVSFVVLDEADRMLD-LGFEPQINKTSIYIN----PNRQTVMTSATWNKDVQRVAKKYMVN-PVKVNVGSLDLAATH 813 (936)
Q Consensus 740 ~~~~i~~lViDEah~l~~-~~~~~~~~~i~~~~~----~~~q~v~~SAT~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~ 813 (936)
.+++++++|+||||+|+| ++|.++++.|..... ..+|+++||||+|..+..++..++.+ .+.+.++... ....
T Consensus 223 ~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg-~~~~ 301 (482)
T KOG0335|consen 223 SLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVG-STSE 301 (482)
T ss_pred ehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeec-cccc
Confidence 999999999999999999 999999999988874 37899999999999999998888886 7777777665 4567
Q ss_pred ceEEEEEEcCcchhHHHHHHHHHhccC--CCC-----cEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHH
Q psy7557 814 TVTQKIIILDEDEKKDWLMEFFDNMDE--ERD-----KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALE 886 (936)
Q Consensus 814 ~~~~~~~~~~~~~k~~~l~~~l~~~~~--~~~-----~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~ 886 (936)
.+.|.+..+.+..|...|++++..... ... +++|||.+++.|..++..|...++....+||+.++.+|.+.++
T Consensus 302 ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~ 381 (482)
T KOG0335|consen 302 NITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALN 381 (482)
T ss_pred cceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHH
Confidence 789999999999999999999986531 233 8999999999999999999999999999999999999999999
Q ss_pred HhhcCCCcEEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 887 DITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 887 ~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
.|++|++.+||||++++||+|+|+|+|||+||+|.++.+|+||||||||+
T Consensus 382 ~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~ 431 (482)
T KOG0335|consen 382 DFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRV 431 (482)
T ss_pred HhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccC
Confidence 99999999999999999999999999999999999999999999999995
No 38
>KOG0343|consensus
Probab=100.00 E-value=4.1e-59 Score=488.59 Aligned_cols=337 Identities=33% Similarity=0.510 Sum_probs=310.6
Q ss_pred cCChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEE
Q psy7557 594 VTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSV 673 (936)
Q Consensus 594 ~~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~ 673 (936)
+..|++ |+++...+++|+..+|..||.+|.++||..+.|+|+++.|.||||||+||++|+++++.... |....|--|
T Consensus 68 ~~kF~d-lpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~k--Ws~~DGlGa 144 (758)
T KOG0343|consen 68 IKKFAD-LPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLK--WSPTDGLGA 144 (758)
T ss_pred hhhHHh-CCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcC--CCCCCCcee
Confidence 346777 78999999999999999999999999999999999999999999999999999999987643 556678889
Q ss_pred EEEecCHHHHHHHHHHHHhcc-CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcC-CCCCCCceEEEEcc
Q psy7557 674 LVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRA-SIDLKAVSFVVLDE 751 (936)
Q Consensus 674 lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~-~~~~~~i~~lViDE 751 (936)
|||.||||||.|+++.+.+.+ ..++..+.+.||.+.......+. +++|+|||||||+.++... .+..+++.++|+||
T Consensus 145 lIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDE 223 (758)
T KOG0343|consen 145 LIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDE 223 (758)
T ss_pred EEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcceEEEecc
Confidence 999999999999999999986 55788999999999887766664 4899999999999999875 56788999999999
Q ss_pred cchhccCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCC-cccCCceEEEEEEcCcchhHHH
Q psy7557 752 ADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLD-LAATHTVTQKIIILDEDEKKDW 830 (936)
Q Consensus 752 ah~l~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~k~~~ 830 (936)
||+|+++||...+..|...+|+.+|+++||||.+..+.++++..+.+|..+.+.... ...+..+.|.+++++...|.+.
T Consensus 224 ADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~ 303 (758)
T KOG0343|consen 224 ADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDM 303 (758)
T ss_pred HHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHH
Confidence 999999999999999999999999999999999999999999999999999988443 5667789999999999999999
Q ss_pred HHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhc--CCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCC
Q psy7557 831 LMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQ--YRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDV 908 (936)
Q Consensus 831 l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~--~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidi 908 (936)
|..++..+ ...+.|||++|.+++..++..|..+ |+.+..+||.|+|..|..++..|-..+.-||+|||+++||+|+
T Consensus 304 L~sFI~sh--lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDF 381 (758)
T KOG0343|consen 304 LWSFIKSH--LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDF 381 (758)
T ss_pred HHHHHHhc--cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCC
Confidence 99999987 4678999999999999999999875 5677889999999999999999999999999999999999999
Q ss_pred CCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 909 PDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 909 p~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
|.|++||++|+|.++++||||+||++|+
T Consensus 382 paVdwViQ~DCPedv~tYIHRvGRtAR~ 409 (758)
T KOG0343|consen 382 PAVDWVIQVDCPEDVDTYIHRVGRTARY 409 (758)
T ss_pred cccceEEEecCchhHHHHHHHhhhhhcc
Confidence 9999999999999999999999999996
No 39
>KOG0951|consensus
Probab=100.00 E-value=1.2e-57 Score=515.68 Aligned_cols=811 Identities=19% Similarity=0.217 Sum_probs=520.7
Q ss_pred hCCCCCCcHHHHHHHHHHhcC-CcEEEEecCCCCcchhchHHHHHHhhcCCCC--CCCCCCCEEEEEcCcHHHHHHHHHH
Q psy7557 93 NLSFTTPSPIQAQAWPILMSG-HDMIGIAQTGTGKTFAFLLPALIHTHLQTTP--ISERAGPSVLVMAPTRELATQIERE 169 (936)
Q Consensus 93 ~~g~~~~~~~Q~~ai~~~~~g-~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~--~~~~~~~~~lil~Pt~~La~Q~~~~ 169 (936)
-.|+.+++++|+...++++.+ .|+++|||||+|||.++++.+++.+..+... .......+++|++|+++|++.+...
T Consensus 304 F~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~Vgs 383 (1674)
T KOG0951|consen 304 FFGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGS 383 (1674)
T ss_pred cccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHH
Confidence 357788999999999999876 6899999999999999999999988665331 1123466899999999999999998
Q ss_pred HHh-ccCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcC---CCCceEEEEccchhhhcCCCHHHHH
Q psy7557 170 VNK-IDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASID---LKAVSFVVLDEADRMLDLGFEPQIN 245 (936)
Q Consensus 170 ~~~-~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~---~~~~~~lViDEah~l~~~~~~~~~~ 245 (936)
|.+ +...|++|...+|+.....+.. .+.+|+|+|||+| |.+.++.-+ .+-++++|+||.|.+.|. .++.++
T Consensus 384 fSkRla~~GI~V~ElTgD~~l~~~qi---eeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIHLLhDd-RGpvLE 458 (1674)
T KOG0951|consen 384 FSKRLAPLGITVLELTGDSQLGKEQI---EETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIHLLHDD-RGPVLE 458 (1674)
T ss_pred HHhhccccCcEEEEecccccchhhhh---hcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhhhcccc-cchHHH
Confidence 876 7889999999999877654422 4589999999999 778776443 345799999999976553 456665
Q ss_pred HHHhhc-------CCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHH-------H
Q psy7557 246 KTSIYI-------NPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDW-------L 311 (936)
Q Consensus 246 ~i~~~~-------~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~-------l 311 (936)
.|.... ....+++++|||+| +..+++..+..++..+.. ......+.++.|.++-+........ .
T Consensus 459 SIVaRt~r~ses~~e~~RlVGLSATLP-Ny~DV~~Fl~v~~~glf~-fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~ 536 (1674)
T KOG0951|consen 459 SIVARTFRRSESTEEGSRLVGLSATLP-NYEDVASFLRVDPEGLFY-FDSSYRPVPLKQQYIGITEKKPLKRFQAMNEAC 536 (1674)
T ss_pred HHHHHHHHHhhhcccCceeeeecccCC-chhhhHHHhccCcccccc-cCcccCcCCccceEeccccCCchHHHHHHHHHH
Confidence 554433 34789999999999 566777777777633333 2333567888999887776543322 2
Q ss_pred HHHHHhccCCCCcEEEEeCchHHHHHHHHHhhh-------------------------------------cCCceeeecC
Q psy7557 312 MEFFDNMDEERDKVMVFMGRKASVSAMSSDLAC-------------------------------------QYRKSCSLYG 354 (936)
Q Consensus 312 ~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~-------------------------------------~~~~~~~~h~ 354 (936)
++-+-.+ ...+++||||++|+++.+.|+.++. ..++.+.||+
T Consensus 537 yeKVm~~-agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhA 615 (1674)
T KOG0951|consen 537 YEKVLEH-AGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHA 615 (1674)
T ss_pred HHHHHHh-CCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeecc
Confidence 3323333 2348999999999999999888762 1246677999
Q ss_pred CCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEE----EecCC------CCccccccCCCCcccCCCc--eeE
Q psy7557 355 DLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVI----NYDFP------SHIEEYVHRVGRTGRAGKS--GES 422 (936)
Q Consensus 355 ~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI----~~d~p------~s~~~y~qr~GRagR~g~~--g~~ 422 (936)
||++.+|..+++.|++|.++|||+|.+++||+|+|+.+++| .||+- .++.+.+||.|||||.+.. |.+
T Consensus 616 Gl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~geg 695 (1674)
T KOG0951|consen 616 GLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEG 695 (1674)
T ss_pred CCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCce
Confidence 99999999999999999999999999999999999999998 67763 4788999999999999654 777
Q ss_pred EEEecccChhhHHhHHH---------------HHhhcCCcc------chhhhhccccceeEeecCC--------------
Q psy7557 423 ITLMTRKDWSHAHEIIP---------------ILEEGGHES------YMIWRRDSRIALHVILEGG-------------- 467 (936)
Q Consensus 423 ~~~~~~~~~~~~~~l~~---------------~l~~~~~~~------~~~~~~~~~~~~~~~~~~~-------------- 467 (936)
+++...++......+++ -+...-... -.-|...+....+......
T Consensus 696 iiit~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~Gv~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le 775 (1674)
T KOG0951|consen 696 IIITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLGVRSARDAVDWLGYTYLYVRMVRNPTLYGVSPEASDRLLE 775 (1674)
T ss_pred eeccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcchhhHHHHHhhhcceeeEEeeccCchhccCCcccchHHHH
Confidence 77777666544332211 111000000 0002211111101000000
Q ss_pred ----------------------------------ceeeecccCCCcchhhhcc--------cchhhh-----------hc
Q psy7557 468 ----------------------------------EEVVEEEEGGEDGMEILVG--------VDLEVV-----------ME 494 (936)
Q Consensus 468 ----------------------------------~~~~~~~e~~~~~~~~~~~--------~~l~~~-----------~~ 494 (936)
.++...++..+..+..+.. -++.+. .+
T Consensus 776 ~~r~~lvhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~s~~~yn~~L~~~~~~i~lfrifs~seEfk~~svr 855 (1674)
T KOG0951|consen 776 QRRADLVHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITHGSMATYNELLKETMSEIDLFRIFSKSEEFKYVSVR 855 (1674)
T ss_pred HHHhhhHHHHHhhHhhcCccccccccCcccchhhccccceeeeecchHHHHHhhhhhhhccchhhhhhhhccccccCCcc
Confidence 1111112222222222211 001000 22
Q ss_pred cchhhhHHHhhhhhcccCCCCCCCc---------------------------------------------------cHHH
Q psy7557 495 GEEEGEVAIQMINKIDLGRHIDPEP---------------------------------------------------TMEE 523 (936)
Q Consensus 495 ~e~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------~~~~ 523 (936)
.++..+.....+..+.+.++.-.++ ....
T Consensus 856 ~~ek~el~~l~~~vpIpire~l~~p~akinvllq~yiS~lk~eG~al~~dmv~i~q~agRl~Ra~fei~l~rgw~~~~~~ 935 (1674)
T KOG0951|consen 856 EEEKMELAKLLERVPIPIRENLDEPSAKINVLLQSYISQLKLEGFALTSDMVYITQSAGRLFRALFEIVLKRGWAGLAQM 935 (1674)
T ss_pred HHHHHHhhhhcccCCcCchhccccchHHHHHHHHHHHhhcccccceeeeeEEEeccchHHHHHHHHHHHhhcCcchHHHH
Confidence 3333444444445555555443332 2347
Q ss_pred HHhhccHHHhhhhcccCccccCCccCChhhhCCCHHHH--------------------------HHHHhhcCCcee----
Q psy7557 524 LMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQV--------------------------EAFRKKNNDISV---- 573 (936)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~---- 573 (936)
++.+||+.++++|....|.+++.-.+.+-..++...+. -.+-......++
T Consensus 936 ~l~~ck~v~~r~w~~~~plrqf~~~~~ev~~~lE~k~~~~~r~~~l~~~elg~lI~~~k~G~~l~~~~~~fpk~s~~~~v 1015 (1674)
T KOG0951|consen 936 ALNLCKMVEKRMWPTQTPLRQFKGCPKEVLRRLEKKELPWGRYYDLDPAELGELIGVPKMGKPLHLFIRQFPKLSVSAHV 1015 (1674)
T ss_pred HHHhHhHhhhhcccccCchhhcCCCCHHHHHHHHhccCcchhhhccCHHHHHHHhcCcccChhHHHHHHhcccceeeeee
Confidence 78899999999999998887775544433332222211 000000000000
Q ss_pred ---------------------------------eeecCCCCcC----------------CCCCCCCCCCc----------
Q psy7557 574 ---------------------------------SVVTSDGQID----------------ENPDFQIPNPV---------- 594 (936)
Q Consensus 574 ---------------------------------~~~~~~~~~~----------------~~~~~~~p~~~---------- 594 (936)
-+...++... ..-+.--|+|.
T Consensus 1016 qpitr~~~~~~l~i~~~f~wd~~vh~~~e~F~i~ved~dge~il~~e~~~~~k~~~~v~ft~~~~~~pP~~fi~lvSd~w 1095 (1674)
T KOG0951|consen 1016 QPITRSVYRVELTITPDFDWDDKVHGSVEPFWIIVEDTDGEKILHHEFFLLKKKEHTVNFTVPLFEPPPQYFIRLVSDRW 1095 (1674)
T ss_pred eeeeeeEEEEEEEEeecccchhhhcccccceEEEEEccCccceeeeeeEEeccCceEEEEEeecCCCCCceEEEEeeccc
Confidence 0000000000 00000111111
Q ss_pred --------CChHHh-----hc-------CCHHHHHHHHhCC----CCCCcHHHHHHHHhhhc-CCcEEEEecCCCCcchh
Q psy7557 595 --------TSFKQA-----FQ-------HYPEILRQLENLS----FTTPSPIQAQAWPILMS-GHDMIGIAQTGTGKTFA 649 (936)
Q Consensus 595 --------~~f~~~-----~~-------l~~~~~~~l~~~g----~~~p~~iQ~~ai~~~l~-g~d~i~~apTGsGKTl~ 649 (936)
.+|..+ ++ +-+.-..+|.+.. |...+|+|.++++.+.+ +++++++||+|||||.|
T Consensus 1096 l~s~~~~Pvsfr~l~lpek~p~pt~lld~~~~~~~~l~N~~~~~lf~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ 1175 (1674)
T KOG0951|consen 1096 LHSETVLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNPSFETLFQDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTAC 1175 (1674)
T ss_pred cCCCcccccchhhccCcccCCCCchhhhccccchhccCCcchhhhccccCCceEEEEeeeecccceEEEecCCCCchhHH
Confidence 123221 11 1111222333332 23458999999999885 56899999999999999
Q ss_pred hHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHh-cc-CCCCEEEEEECCccchHHHHHHhcCceEEEeCc
Q psy7557 650 FLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK-ID-YKGLKAVCVYGGKELEPQLEKIREGCHILIATP 727 (936)
Q Consensus 650 ~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~-~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp 727 (936)
+.++++. .....++++++|..+.+..++..|.+ +. ..|..++.++|..+.+-. +....+|+|+||
T Consensus 1176 ae~a~l~----------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~lk---l~~~~~vii~tp 1242 (1674)
T KOG0951|consen 1176 AELALLR----------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDLK---LLQKGQVIISTP 1242 (1674)
T ss_pred HHHHhcC----------CccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCccccchH---HhhhcceEEech
Confidence 9988773 13456899999999999876666644 43 357788888877665533 444579999999
Q ss_pred hHHHHHHHcCCCCCCCceEEEEcccchhccCC------CHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeE
Q psy7557 728 GRLNDFVSRASIDLKAVSFVVLDEADRMLDLG------FEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVK 801 (936)
Q Consensus 728 ~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~------~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~ 801 (936)
++|..+ + ..+.+++.|.||.|.+.+.+ .-. +++|...+.++.+++++|..+. +.+++ .+....-.
T Consensus 1243 e~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q~~k~ir~v~ls~~la-na~d~--ig~s~~~v 1313 (1674)
T KOG0951|consen 1243 EQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQLEKKIRVVALSSSLA-NARDL--IGASSSGV 1313 (1674)
T ss_pred hHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHHHHhheeEEEeehhhc-cchhh--ccccccce
Confidence 999665 2 57889999999999877432 112 7788888889999999999885 44554 12222222
Q ss_pred EEeCCCCcccCCceE-EEEEEcCcc----hhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhc-----------
Q psy7557 802 VNVGSLDLAATHTVT-QKIIILDED----EKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQ----------- 865 (936)
Q Consensus 802 i~~~~~~~~~~~~~~-~~~~~~~~~----~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~----------- 865 (936)
++..+.....+..+. |.+...... ...+..+..+..+...+++.+||++++++|..++..|...
T Consensus 1314 ~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~ 1393 (1674)
T KOG0951|consen 1314 FNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLS 1393 (1674)
T ss_pred eecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHH
Confidence 222222211111111 111111111 1122234445555567899999999999999888766421
Q ss_pred -------------CCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEE----ccC------CCC
Q psy7557 866 -------------YRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVIN----YDF------PSH 922 (936)
Q Consensus 866 -------------~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~----~d~------p~s 922 (936)
..+++ |-+|+..+...+-..|..|.++|+|...- .+|+-....-+|+. ||. +-+
T Consensus 1394 ~~e~~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~ 1470 (1674)
T KOG0951|consen 1394 ELEECDETLRESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYP 1470 (1674)
T ss_pred HHhcchHhhhhccccccc--ccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEEecceeecccccccccCc
Confidence 12333 88999999999999999999999999877 99988865555552 332 345
Q ss_pred hhhhHhhhhhccCC
Q psy7557 923 IEEYVHRVGRTGEF 936 (936)
Q Consensus 923 ~~~yiqr~GRaGR~ 936 (936)
+.+..||+|+|.|+
T Consensus 1471 i~~ll~m~G~a~~~ 1484 (1674)
T KOG0951|consen 1471 IAELLQMVGLASGA 1484 (1674)
T ss_pred hhHHHHHhhhhcCC
Confidence 88999999999874
No 40
>KOG0334|consensus
Probab=100.00 E-value=2.5e-59 Score=530.87 Aligned_cols=383 Identities=42% Similarity=0.687 Sum_probs=354.9
Q ss_pred ccCccccCCccCChhhhCCCHHHHHHHHhhcCCceeeeecCCCCcCCCCCCCCCCCcCChHHhhcCCHHHHHHHHhCCCC
Q psy7557 538 REPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFT 617 (936)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~f~~~~~l~~~~~~~l~~~g~~ 617 (936)
...+++++||.+..+++.|+.++++.++.....+.+... .+|.|+.+|.+ .++...+++.++++||.
T Consensus 320 ~~epFRknfy~e~~di~~ms~~eV~~yr~~l~~i~v~g~------------~~pkpv~sW~q-~gl~~~il~tlkkl~y~ 386 (997)
T KOG0334|consen 320 SYEPFRKNFYIEVRDIKRMSAAEVDEYRCELDGIKVKGK------------ECPKPVTSWTQ-CGLSSKILETLKKLGYE 386 (997)
T ss_pred cchhhhhcccccchhHHHHHHHHHHHhhcCccceeeccC------------CCCcccchHhh-CCchHHHHHHHHHhcCC
Confidence 457789999999999999999999999988877666543 78999999998 58999999999999999
Q ss_pred CCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhcc-CC
Q psy7557 618 TPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID-YK 696 (936)
Q Consensus 618 ~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~-~~ 696 (936)
.|+|||.+|||++++|+|+|++|-||||||++|++|++.|...++.. ..+.||.+||++|||+||.||.+.++.|. ..
T Consensus 387 k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~-~~gdGPi~li~aPtrela~QI~r~~~kf~k~l 465 (997)
T KOG0334|consen 387 KPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPL-EEGDGPIALILAPTRELAMQIHREVRKFLKLL 465 (997)
T ss_pred CCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCCh-hhCCCceEEEEcCCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999887654 44669999999999999999999999984 57
Q ss_pred CCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCC---CCCCCceEEEEcccchhccCCCHHHHHHHhhhcCC
Q psy7557 697 GLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRAS---IDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINP 773 (936)
Q Consensus 697 ~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~---~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~~~ 773 (936)
+++++++|||.....++..+++|+.|+|||||++.+++-.+. .++.++.++|+||||+|++++|.+++..|+..+++
T Consensus 466 ~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrp 545 (997)
T KOG0334|consen 466 GIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRP 545 (997)
T ss_pred CceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcch
Confidence 999999999999999999999999999999999999886543 35677779999999999999999999999999999
Q ss_pred CceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcC-cchhHHHHHHHHHhccCCCCcEEEEcCCh
Q psy7557 774 NRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD-EDEKKDWLMEFFDNMDEERDKVMVFMGRK 852 (936)
Q Consensus 774 ~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~~~~~~iIF~~s~ 852 (936)
.+|+++||||+|..++.++...+..|+.+.++... .....+.+.+.++. +..|+..|..++.... ...++||||.+.
T Consensus 546 drQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~s-vV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~-e~~~tiiFv~~q 623 (997)
T KOG0334|consen 546 DRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRS-VVCKEVTQVVRVCAIENEKFLKLLELLGERY-EDGKTIIFVDKQ 623 (997)
T ss_pred hhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccce-eEeccceEEEEEecCchHHHHHHHHHHHHHh-hcCCEEEEEcCc
Confidence 99999999999999999999999999998888654 56677888888888 8999999999998874 478999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhh
Q psy7557 853 ASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGR 932 (936)
Q Consensus 853 ~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GR 932 (936)
..|+.+...|...++.+..+||+.++.+|..++++|++|.+.+||||++++||+|++++.+|||||+|...++|+||+||
T Consensus 624 e~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gR 703 (997)
T KOG0334|consen 624 EKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGR 703 (997)
T ss_pred hHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q psy7557 933 TGEF 936 (936)
Q Consensus 933 aGR~ 936 (936)
|||+
T Consensus 704 Tgra 707 (997)
T KOG0334|consen 704 TGRA 707 (997)
T ss_pred cccC
Confidence 9996
No 41
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=9.6e-58 Score=520.43 Aligned_cols=361 Identities=34% Similarity=0.556 Sum_probs=322.7
Q ss_pred ChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEE
Q psy7557 76 SFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLV 155 (936)
Q Consensus 76 ~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~li 155 (936)
+|++ +++++.+++.|.+.||.+|+++|.++||.++.|+|++++||||||||++|++|++.++.... .....++++||
T Consensus 2 ~f~~-l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~--~~~~~~~~~li 78 (434)
T PRK11192 2 TFSE-LELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFP--RRKSGPPRILI 78 (434)
T ss_pred CHhh-cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcc--ccCCCCceEEE
Confidence 5777 78999999999999999999999999999999999999999999999999999998886532 12234579999
Q ss_pred EcCcHHHHHHHHHHHHhcc-CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchh
Q psy7557 156 MAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADR 234 (936)
Q Consensus 156 l~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~ 234 (936)
++||++||.|+++.+..+. ..++++..++||.....+...+..+++|+|+||++|.+++..+.+.++++++|||||||+
T Consensus 79 l~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~ 158 (434)
T PRK11192 79 LTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADR 158 (434)
T ss_pred ECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHH
Confidence 9999999999999999874 568999999999998888777878899999999999999999888899999999999999
Q ss_pred hhcCCCHHHHHHHHhhcCCCCcEEEEEeccch-HHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCc-hhhHHHHH
Q psy7557 235 MLDLGFEPQINKTSIYINPNRQTVMTSATWNK-DVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDE-DEKKDWLM 312 (936)
Q Consensus 235 l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~ 312 (936)
|++++|...+..+...++...|+++||||++. .+..+...++.+|..+....... ....+.+.+..++. ..|...+.
T Consensus 159 ~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~i~~~~~~~~~~~~k~~~l~ 237 (434)
T PRK11192 159 MLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRR-ERKKIHQWYYRADDLEHKTALLC 237 (434)
T ss_pred HhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcc-cccCceEEEEEeCCHHHHHHHHH
Confidence 99999999999999989888999999999985 57888888999998887765442 33456666666653 56777777
Q ss_pred HHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCc
Q psy7557 313 EFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLT 392 (936)
Q Consensus 313 ~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~ 392 (936)
.++.. ....++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+++
T Consensus 238 ~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~ 315 (434)
T PRK11192 238 HLLKQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVS 315 (434)
T ss_pred HHHhc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCC
Confidence 77664 2467999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHh
Q psy7557 393 HVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILE 442 (936)
Q Consensus 393 ~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~ 442 (936)
+|||||+|.+..+|+||+|||||+|..|.|++|++..|...+..+.+++.
T Consensus 316 ~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~ 365 (434)
T PRK11192 316 HVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIE 365 (434)
T ss_pred EEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999888888776665
No 42
>KOG0340|consensus
Probab=100.00 E-value=5.5e-59 Score=464.17 Aligned_cols=335 Identities=33% Similarity=0.499 Sum_probs=302.2
Q ss_pred CChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEE
Q psy7557 595 TSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVL 674 (936)
Q Consensus 595 ~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~l 674 (936)
..|+. +++++++.+.|+.+|+..|||+|..|||.++.|+|+|++|.||||||++|.+|++..+... ..|-.++
T Consensus 7 ~~F~~-LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsed------P~giFal 79 (442)
T KOG0340|consen 7 KPFSI-LGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSED------PYGIFAL 79 (442)
T ss_pred Cchhh-cCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccC------CCcceEE
Confidence 45776 7999999999999999999999999999999999999999999999999999999888543 4577899
Q ss_pred EEecCHHHHHHHHHHHHhcc-CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcC----CCCCCCceEEEE
Q psy7557 675 VMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRA----SIDLKAVSFVVL 749 (936)
Q Consensus 675 il~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~----~~~~~~i~~lVi 749 (936)
|+.||||||.|+.++|..++ ..++++..++||.+.-.+...|...+|++|+|||++.+++..+ ...+++++++|+
T Consensus 80 vlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVl 159 (442)
T KOG0340|consen 80 VLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVL 159 (442)
T ss_pred EecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEe
Confidence 99999999999999999986 5689999999999999998899999999999999999998876 235899999999
Q ss_pred cccchhccCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCC-CCcccCCceEEEEEEcCcchhH
Q psy7557 750 DEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGS-LDLAATHTVTQKIIILDEDEKK 828 (936)
Q Consensus 750 DEah~l~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~k~ 828 (936)
||||++++..|...++-+...+|+.+|.++||||++..+..+...-...+....+.. .+.+....+.+.++.++...+.
T Consensus 160 DEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkd 239 (442)
T KOG0340|consen 160 DEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKD 239 (442)
T ss_pred cchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhH
Confidence 999999999999999999999999999999999998777665444333322222222 3446667788999999999999
Q ss_pred HHHHHHHHhccC-CCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCC
Q psy7557 829 DWLMEFFDNMDE-ERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLD 907 (936)
Q Consensus 829 ~~l~~~l~~~~~-~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gid 907 (936)
.+++.++..+.. +.+.++||+|+..+|+.++..|....+.+.++||.|+|++|...+.+|+++..+||||||+++||+|
T Consensus 240 aYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLD 319 (442)
T KOG0340|consen 240 AYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLD 319 (442)
T ss_pred HHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCC
Confidence 999999998865 5788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 908 VPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 908 ip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
||.|++|||||+|.++.+||||+||+.|+
T Consensus 320 IP~V~LVvN~diPr~P~~yiHRvGRtARA 348 (442)
T KOG0340|consen 320 IPTVELVVNHDIPRDPKDYIHRVGRTARA 348 (442)
T ss_pred CCceeEEEecCCCCCHHHHHHhhcchhcc
Confidence 99999999999999999999999999885
No 43
>KOG0342|consensus
Probab=100.00 E-value=1.3e-58 Score=481.76 Aligned_cols=335 Identities=35% Similarity=0.547 Sum_probs=304.5
Q ss_pred hHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEE
Q psy7557 597 FKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVM 676 (936)
Q Consensus 597 f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil 676 (936)
|++ +.+++..+++++.+||..+|++|..+++.++.|+|+++.|.||||||+||++|+++.+..... ....+-.++|+
T Consensus 84 f~~-~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~--~~r~~~~vlIi 160 (543)
T KOG0342|consen 84 FEE-GSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKF--KPRNGTGVLII 160 (543)
T ss_pred hhc-cccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhccc--CCCCCeeEEEe
Confidence 444 689999999999999999999999999999999999999999999999999999999876543 33467889999
Q ss_pred ecCHHHHHHHHHHHHhcc-CC-CCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcC-CCCCCCceEEEEcccc
Q psy7557 677 APTRELATQIEREVNKID-YK-GLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRA-SIDLKAVSFVVLDEAD 753 (936)
Q Consensus 677 ~Pt~~La~Q~~~~~~~~~-~~-~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~-~~~~~~i~~lViDEah 753 (936)
|||||||.|++.+++.+. +. ++.+..+.||.........+.++++|+|+|||||.+++.+. .+.++.++++|+||||
T Consensus 161 ~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD 240 (543)
T KOG0342|consen 161 CPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD 240 (543)
T ss_pred cccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch
Confidence 999999999999999873 33 78999999999999999999999999999999999999885 4556788999999999
Q ss_pred hhccCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcC-CCeEEEeCCCCc-ccCCceEEEEEEcCcchhHHHH
Q psy7557 754 RMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMV-NPVKVNVGSLDL-AATHTVTQKIIILDEDEKKDWL 831 (936)
Q Consensus 754 ~l~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~-~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l 831 (936)
++++.||+..+..|...++..+|+++||||.|..+++++.-.+. +|..+++..... .....+.|.+.+++...++..+
T Consensus 241 rlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll 320 (543)
T KOG0342|consen 241 RLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLL 320 (543)
T ss_pred hhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHH
Confidence 99999999999999999999999999999999999999987654 588887655433 3445678888889988888889
Q ss_pred HHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCC
Q psy7557 832 MEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDL 911 (936)
Q Consensus 832 ~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v 911 (936)
+.++..+.. ..++||||+|...+..+++.|.....+|..+||+++|..|..+...|++.+..|||||||+|||+|+|+|
T Consensus 321 ~~~LKk~~~-~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V 399 (543)
T KOG0342|consen 321 YTFLKKNIK-RYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDV 399 (543)
T ss_pred HHHHHHhcC-CceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCc
Confidence 999988743 3899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEccCCCChhhhHhhhhhccC
Q psy7557 912 THVINYDFPSHIEEYVHRVGRTGE 935 (936)
Q Consensus 912 ~~VI~~d~p~s~~~yiqr~GRaGR 935 (936)
++||+||+|.+.++||||+|||||
T Consensus 400 ~~VvQ~~~P~d~~~YIHRvGRTaR 423 (543)
T KOG0342|consen 400 DWVVQYDPPSDPEQYIHRVGRTAR 423 (543)
T ss_pred eEEEEeCCCCCHHHHHHHhccccc
Confidence 999999999999999999999999
No 44
>KOG0345|consensus
Probab=100.00 E-value=8.8e-58 Score=471.58 Aligned_cols=333 Identities=33% Similarity=0.520 Sum_probs=298.7
Q ss_pred hcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCH
Q psy7557 601 FQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTR 680 (936)
Q Consensus 601 ~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~ 680 (936)
.+|++++++++...||...||+|..+||.+++++|+++.|+||||||+||++|+++.+..+..... ...--+|||+|||
T Consensus 11 ~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~-~~~vgalIIsPTR 89 (567)
T KOG0345|consen 11 PPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTP-PGQVGALIISPTR 89 (567)
T ss_pred CCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCC-ccceeEEEecCcH
Confidence 356799999999999999999999999999999999999999999999999999988854332111 1124689999999
Q ss_pred HHHHHHHHHHHhcc--CCCCEEEEEECCccchHHHHHHhc-CceEEEeCchHHHHHHHcC--CCCCCCceEEEEcccchh
Q psy7557 681 ELATQIEREVNKID--YKGLKAVCVYGGKELEPQLEKIRE-GCHILIATPGRLNDFVSRA--SIDLKAVSFVVLDEADRM 755 (936)
Q Consensus 681 ~La~Q~~~~~~~~~--~~~~~~~~~~gg~~~~~~~~~l~~-~~~IiV~Tp~~l~~~l~~~--~~~~~~i~~lViDEah~l 755 (936)
|||.||.+.+..|. ..++++.+++||.........+++ ++.|+|||||||.+++.+. .++++.+.++|+||||++
T Consensus 90 ELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrL 169 (567)
T KOG0345|consen 90 ELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRL 169 (567)
T ss_pred HHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhH
Confidence 99999999999873 368899999999998888777664 6889999999999999885 345669999999999999
Q ss_pred ccCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCc-ccCCceEEEEEEcCcchhHHHHHHH
Q psy7557 756 LDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDL-AATHTVTQKIIILDEDEKKDWLMEF 834 (936)
Q Consensus 756 ~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~~ 834 (936)
+++||...++.|+..+|..+++-+||||....+.++....++||+.+.+..... ..+..+...+..|....|...++.+
T Consensus 170 ldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~ 249 (567)
T KOG0345|consen 170 LDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHL 249 (567)
T ss_pred hcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887653 2445577788899999999999999
Q ss_pred HHhccCCCCcEEEEcCChHHHHHHHHHHHhc--CCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCC
Q psy7557 835 FDNMDEERDKVMVFMGRKASVSAMSSDLACQ--YRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLT 912 (936)
Q Consensus 835 l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~--~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~ 912 (936)
+... ..+++|||.+|...++..+..|... ...++.+||.|.+..|..+++.|++....+|+|||+++||||||+|+
T Consensus 250 L~~~--~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD 327 (567)
T KOG0345|consen 250 LNNN--KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGID 327 (567)
T ss_pred Hhcc--ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCce
Confidence 9985 5689999999999999999888764 56789999999999999999999998899999999999999999999
Q ss_pred EEEEccCCCChhhhHhhhhhccCC
Q psy7557 913 HVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 913 ~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
+||+||+|.+...|+||+|||||+
T Consensus 328 ~VvQ~DpP~~~~~FvHR~GRTaR~ 351 (567)
T KOG0345|consen 328 LVVQFDPPKDPSSFVHRCGRTARA 351 (567)
T ss_pred EEEecCCCCChhHHHhhcchhhhc
Confidence 999999999999999999999995
No 45
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=9.4e-57 Score=516.19 Aligned_cols=370 Identities=38% Similarity=0.607 Sum_probs=327.9
Q ss_pred CcccChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCC-CCCC
Q psy7557 72 NPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS-ERAG 150 (936)
Q Consensus 72 ~p~~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~-~~~~ 150 (936)
....+|.+ +++++.++++|.+.||.+|+++|.++|+.+++|+|++++||||||||++|++|++..+........ ....
T Consensus 84 ~~~~~f~~-~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~ 162 (475)
T PRK01297 84 EGKTRFHD-FNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGE 162 (475)
T ss_pred cCCCCHhH-CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCC
Confidence 34557887 689999999999999999999999999999999999999999999999999999988765432111 1125
Q ss_pred CEEEEEcCcHHHHHHHHHHHHhcc-CCCCEEEEEeCCccchHHHHHhhc-CCcEEEeCCchhHHHHHcCCcCCCCceEEE
Q psy7557 151 PSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIRE-GCHILIATPGRLNDFVSRASIDLKAVSFVV 228 (936)
Q Consensus 151 ~~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lV 228 (936)
+++|||+||++||.|+++.++.+. ..++++..++||.+...+...+.. .++|+|+||++|.+++.++...++++++||
T Consensus 163 ~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lV 242 (475)
T PRK01297 163 PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMV 242 (475)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEE
Confidence 799999999999999999999874 568899999999888777776654 589999999999999988888899999999
Q ss_pred EccchhhhcCCCHHHHHHHHhhcCC--CCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchh
Q psy7557 229 LDEADRMLDLGFEPQINKTSIYINP--NRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDE 306 (936)
Q Consensus 229 iDEah~l~~~~~~~~~~~i~~~~~~--~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 306 (936)
|||||++++++|...+.++...++. ++|++++|||++.++..++..++.+|..+.+..... ....+.+.+..+...+
T Consensus 243 iDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~ 321 (475)
T PRK01297 243 LDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENV-ASDTVEQHVYAVAGSD 321 (475)
T ss_pred echHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcC-CCCcccEEEEEecchh
Confidence 9999999999999999999888754 679999999999999999999999998887765542 3345677777777788
Q ss_pred hHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCC
Q psy7557 307 KKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGL 386 (936)
Q Consensus 307 k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gi 386 (936)
+...+..++... ...++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++||
T Consensus 322 k~~~l~~ll~~~--~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GI 399 (475)
T PRK01297 322 KYKLLYNLVTQN--PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGI 399 (475)
T ss_pred HHHHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCC
Confidence 888888777653 457999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHhhcC
Q psy7557 387 DVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEGG 445 (936)
Q Consensus 387 Dip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~ 445 (936)
|+|++++||+||+|.|+.+|+||+|||||.|+.|.+++|++++|...+..+.+++....
T Consensus 400 Di~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~ 458 (475)
T PRK01297 400 HIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKI 458 (475)
T ss_pred cccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999998888888888776553
No 46
>KOG0326|consensus
Probab=100.00 E-value=5.7e-59 Score=456.48 Aligned_cols=330 Identities=28% Similarity=0.530 Sum_probs=307.8
Q ss_pred ChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEE
Q psy7557 596 SFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLV 675 (936)
Q Consensus 596 ~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~li 675 (936)
.|++ +.|.++++..+.+.||..|+|+|.++||.+++|+|+++.|..|+|||.||.+|+++.+.. ....-+++|
T Consensus 86 efEd-~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~------~~~~IQ~~i 158 (459)
T KOG0326|consen 86 EFED-YCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDP------KKNVIQAII 158 (459)
T ss_pred cHHH-hhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCc------cccceeEEE
Confidence 4766 678999999999999999999999999999999999999999999999999999987743 234568999
Q ss_pred EecCHHHHHHHHHHHHhcc-CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccch
Q psy7557 676 MAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADR 754 (936)
Q Consensus 676 l~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~ 754 (936)
++||||||.|+.+.+..++ ..++++...+||.+..+.+-.+....+++|+||||++++..++--.++++.++|+||||.
T Consensus 159 lVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADK 238 (459)
T KOG0326|consen 159 LVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADK 238 (459)
T ss_pred EeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhh
Confidence 9999999999999999985 568999999999999999888888899999999999999999988899999999999999
Q ss_pred hccCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHH
Q psy7557 755 MLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEF 834 (936)
Q Consensus 755 l~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 834 (936)
+++..|.+.++.+...+|+++|++++|||+|-.+..+..+++.+|..++.-.. -....+.|++-++.+..|...|..+
T Consensus 239 lLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~e--Ltl~GvtQyYafV~e~qKvhCLntL 316 (459)
T KOG0326|consen 239 LLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEE--LTLKGVTQYYAFVEERQKVHCLNTL 316 (459)
T ss_pred hhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhh--hhhcchhhheeeechhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999998876432 3445688999999999999999998
Q ss_pred HHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEE
Q psy7557 835 FDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHV 914 (936)
Q Consensus 835 l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~V 914 (936)
+.++ .-...||||||...++.+|..+.+.|+.+.++|+.|.|+.|..++.+|++|.++.|||||.+.||||++++++|
T Consensus 317 fskL--qINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvV 394 (459)
T KOG0326|consen 317 FSKL--QINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVV 394 (459)
T ss_pred HHHh--cccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEE
Confidence 8887 45678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCChhhhHhhhhhccCC
Q psy7557 915 INYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 915 I~~d~p~s~~~yiqr~GRaGR~ 936 (936)
||||+|++.++|+||+||+||+
T Consensus 395 INFDfpk~aEtYLHRIGRsGRF 416 (459)
T KOG0326|consen 395 INFDFPKNAETYLHRIGRSGRF 416 (459)
T ss_pred EecCCCCCHHHHHHHccCCccC
Confidence 9999999999999999999996
No 47
>KOG0347|consensus
Probab=100.00 E-value=1.2e-58 Score=485.20 Aligned_cols=371 Identities=31% Similarity=0.454 Sum_probs=316.4
Q ss_pred CCCcccChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcC-CcEEEEecCCCCcchhchHHHHHHhhcCCCC----
Q psy7557 70 IPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSG-HDMIGIAQTGTGKTFAFLLPALIHTHLQTTP---- 144 (936)
Q Consensus 70 ~p~p~~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g-~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~---- 144 (936)
.+-.++.|.+ |.++++++++|.++||.+||+||+.++|.+..| .|+++.|.||||||+||.||++..+......
T Consensus 176 ~~~DvsAW~~-l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~ 254 (731)
T KOG0347|consen 176 SKVDVSAWKN-LFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQEL 254 (731)
T ss_pred cccChHHHhc-CCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhh
Confidence 3445667877 589999999999999999999999999999999 7999999999999999999999854332211
Q ss_pred -CCCCCCC--EEEEEcCcHHHHHHHHHHHHhcc-CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCc-
Q psy7557 145 -ISERAGP--SVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASI- 219 (936)
Q Consensus 145 -~~~~~~~--~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~- 219 (936)
.....++ .+||++||||||.|+.+.+..+. ..++++..++||.....|.+.+...++|||||||||+.++..+..
T Consensus 255 ~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~ 334 (731)
T KOG0347|consen 255 SNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTH 334 (731)
T ss_pred hhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhh
Confidence 0112334 49999999999999999999975 579999999999999999888888899999999999999987644
Q ss_pred --CCCCceEEEEccchhhhcCCCHHHHHHHHhhcC-----CCCcEEEEEeccchH---------------------HHHH
Q psy7557 220 --DLKAVSFVVLDEADRMLDLGFEPQINKTSIYIN-----PNRQTVMTSATWNKD---------------------VQRV 271 (936)
Q Consensus 220 --~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~-----~~~q~~~~SAT~~~~---------------------~~~~ 271 (936)
+++++++||+||||||++.|....+..++..+. ..+|++.||||++-. ++.+
T Consensus 335 l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~L 414 (731)
T KOG0347|consen 335 LGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHL 414 (731)
T ss_pred hhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHH
Confidence 578899999999999999998888888877764 468999999998532 1223
Q ss_pred HHH--hcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCce
Q psy7557 272 AKK--YMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKS 349 (936)
Q Consensus 272 ~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~ 349 (936)
.+. +...|..|...+.. .....+....+.|...+|.-.|+.++..+ .+++|||||++..+..|+-.|...++..
T Consensus 415 mk~ig~~~kpkiiD~t~q~-~ta~~l~Es~I~C~~~eKD~ylyYfl~ry---PGrTlVF~NsId~vKRLt~~L~~L~i~p 490 (731)
T KOG0347|consen 415 MKKIGFRGKPKIIDLTPQS-ATASTLTESLIECPPLEKDLYLYYFLTRY---PGRTLVFCNSIDCVKRLTVLLNNLDIPP 490 (731)
T ss_pred HHHhCccCCCeeEecCcch-hHHHHHHHHhhcCCccccceeEEEEEeec---CCceEEEechHHHHHHHHHHHhhcCCCC
Confidence 332 23356555555443 33344555566677778877777777665 7899999999999999999999999999
Q ss_pred eeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEeccc
Q psy7557 350 CSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRK 429 (936)
Q Consensus 350 ~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~ 429 (936)
..+|+.|.|.+|...++.|++....||||||+++||+|||+|.|||||..|++.+-|+||.|||+|++..|.+++++.+.
T Consensus 491 ~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~ 570 (731)
T KOG0347|consen 491 LPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQ 570 (731)
T ss_pred chhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHhHHHHHhhcC
Q psy7557 430 DWSHAHEIIPILEEGG 445 (936)
Q Consensus 430 ~~~~~~~l~~~l~~~~ 445 (936)
+...+..|.+-|....
T Consensus 571 e~~~~~KL~ktL~k~~ 586 (731)
T KOG0347|consen 571 EVGPLKKLCKTLKKKE 586 (731)
T ss_pred HhHHHHHHHHHHhhcc
Confidence 9999999999888765
No 48
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=9.9e-57 Score=509.31 Aligned_cols=338 Identities=38% Similarity=0.585 Sum_probs=303.1
Q ss_pred CChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCC-ccCCCCEE
Q psy7557 595 TSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI-SERAGPSV 673 (936)
Q Consensus 595 ~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~-~~~~~~~~ 673 (936)
.+|++ +++++.++++|.++||..|||+|.+|||.+++|+|++++||||||||++|++|++..+....... ....++++
T Consensus 8 ~~f~~-~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 8 QKFSD-FALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCHhh-CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 57877 78999999999999999999999999999999999999999999999999999998876533211 12346899
Q ss_pred EEEecCHHHHHHHHHHHHhcc-CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEccc
Q psy7557 674 LVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEA 752 (936)
Q Consensus 674 lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEa 752 (936)
|||+||+|||.|+.+.+..+. ..++++..++||.....+...+..+++|+|+||+++.+++.+..+.++++++||||||
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEa 166 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEA 166 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecH
Confidence 999999999999999998874 5689999999999888888888888999999999999999988889999999999999
Q ss_pred chhccCCCHHHHHHHhhhcCC--CceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHH
Q psy7557 753 DRMLDLGFEPQINKTSIYINP--NRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDW 830 (936)
Q Consensus 753 h~l~~~~~~~~~~~i~~~~~~--~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 830 (936)
|+|++++|...+..+...++. .+|.+++|||++..+..++..++.+|..+.+.... .....+.+.+.+.....|...
T Consensus 167 d~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~-~~~~~i~~~~~~~~~~~k~~~ 245 (423)
T PRK04837 167 DRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRL 245 (423)
T ss_pred HHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCC-cCCCceeEEEEeCCHHHHHHH
Confidence 999999999999999888874 56789999999999999999999999888776543 233456666777777788888
Q ss_pred HHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCC
Q psy7557 831 LMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPD 910 (936)
Q Consensus 831 l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~ 910 (936)
+..++... ...++||||+++..|+.++..|...++.+..+||+|++++|..+++.|++|+++|||||++++||||+|+
T Consensus 246 l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~ 323 (423)
T PRK04837 246 LQTLIEEE--WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPA 323 (423)
T ss_pred HHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccc
Confidence 88887654 4578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 911 LTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 911 v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
+++|||||+|.+..+|+||+|||||+
T Consensus 324 v~~VI~~d~P~s~~~yiqR~GR~gR~ 349 (423)
T PRK04837 324 VTHVFNYDLPDDCEDYVHRIGRTGRA 349 (423)
T ss_pred cCEEEEeCCCCchhheEeccccccCC
Confidence 99999999999999999999999995
No 49
>KOG0952|consensus
Probab=100.00 E-value=7.3e-58 Score=512.50 Aligned_cols=751 Identities=18% Similarity=0.207 Sum_probs=472.6
Q ss_pred HhCCCCCCcHHHHHHHHHHh-cCCcEEEEecCCCCcchhchHHHHHHhhcCCCC-CCCCCCCEEEEEcCcHHHHHHHHHH
Q psy7557 92 ENLSFTTPSPIQAQAWPILM-SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTP-ISERAGPSVLVMAPTRELATQIERE 169 (936)
Q Consensus 92 ~~~g~~~~~~~Q~~ai~~~~-~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~-~~~~~~~~~lil~Pt~~La~Q~~~~ 169 (936)
.-.+|++++.+|+.++|.+. ++.|+|+|||||||||..|+|.++..+..+... ....++.+++||+|+++||.++++.
T Consensus 104 ~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~ 183 (1230)
T KOG0952|consen 104 GFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDK 183 (1230)
T ss_pred hcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHH
Confidence 34678899999999999987 567999999999999999999999888642211 1124678999999999999999999
Q ss_pred HHh-ccCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCc----CCCCceEEEEccchhhhcCCCHHHH
Q psy7557 170 VNK-IDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASI----DLKAVSFVVLDEADRMLDLGFEPQI 244 (936)
Q Consensus 170 ~~~-~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~----~~~~~~~lViDEah~l~~~~~~~~~ 244 (936)
+.+ |...|++|..++|+.+..+.. + ..++|+|+|||+| |++.++.. .++.+++|||||+|.+.|. .++.+
T Consensus 184 ~~kkl~~~gi~v~ELTGD~ql~~te--i-~~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGpvl 258 (1230)
T KOG0952|consen 184 FSKKLAPLGISVRELTGDTQLTKTE--I-ADTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGPVL 258 (1230)
T ss_pred HhhhcccccceEEEecCcchhhHHH--H-HhcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeehhhcCc-ccchH
Confidence 876 888999999999998876654 2 3499999999999 77766543 3688999999999977654 45666
Q ss_pred HHHHhh-------cCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCch---hhH----HH
Q psy7557 245 NKTSIY-------INPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDED---EKK----DW 310 (936)
Q Consensus 245 ~~i~~~-------~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~k~----~~ 310 (936)
+.|+.. .....++|++|||+| +.++++.++..+|..-.........+..+.+.++..+.. .+. +.
T Consensus 259 EtiVaRtlr~vessqs~IRivgLSATlP-N~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~ 337 (1230)
T KOG0952|consen 259 ETIVARTLRLVESSQSMIRIVGLSATLP-NYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEV 337 (1230)
T ss_pred HHHHHHHHHHHHhhhhheEEEEeeccCC-CHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHH
Confidence 555443 346789999999999 788999998888765555555566778888888776654 111 11
Q ss_pred HHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcC-----------------------CceeeecCCCCHHHHHHHHHH
Q psy7557 311 LMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQY-----------------------RKSCSLYGDLSQEDREIALED 367 (936)
Q Consensus 311 l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~-----------------------~~~~~~h~~~~~~~R~~~~~~ 367 (936)
.++.+..+...+.+++|||++++.+...|+.|.... .....+|+||..++|..+++.
T Consensus 338 ~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~ 417 (1230)
T KOG0952|consen 338 CYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKE 417 (1230)
T ss_pred HHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHH
Confidence 222223333568999999999999999999887431 234569999999999999999
Q ss_pred hhcCCcEEEEEecccccCCCCCCCcEEE----EecCCC------CccccccCCCCcccC--CCceeEEEEecccChhhHH
Q psy7557 368 ITSGYARICVATDVASRGLDVPDLTHVI----NYDFPS------HIEEYVHRVGRTGRA--GKSGESITLMTRKDWSHAH 435 (936)
Q Consensus 368 f~~g~~~vLvaT~~~~~GiDip~v~~VI----~~d~p~------s~~~y~qr~GRagR~--g~~g~~~~~~~~~~~~~~~ 435 (936)
|..|.++|||||++++||+|+|+..++| .||..+ ++.+.+|.+|||||+ +..|.++++.+.+...++.
T Consensus 418 F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~ 497 (1230)
T KOG0952|consen 418 FKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYE 497 (1230)
T ss_pred HhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHH
Confidence 9999999999999999999999988887 566554 577889999999998 4569999998887666544
Q ss_pred hHH---------------HHHhhcC--Cccc-----hhhhhccccceeEeecCC--------------------------
Q psy7557 436 EII---------------PILEEGG--HESY-----MIWRRDSRIALHVILEGG-------------------------- 467 (936)
Q Consensus 436 ~l~---------------~~l~~~~--~~~~-----~~~~~~~~~~~~~~~~~~-------------------------- 467 (936)
.|+ +.|...- ..+. -.|...+.+..+...+..
T Consensus 498 sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVRm~KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~ 577 (1230)
T KOG0952|consen 498 SLLTGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYLYVRMRKNPMAYGISYEELEPDPRLESHRRELCLVA 577 (1230)
T ss_pred HHHcCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhceeEEEEeccChHHhhhhhhcccCCchHHHHHHHHHHHH
Confidence 333 2222111 0111 125555543333211100
Q ss_pred ----cee--------------------eecccCCCcchhhhccc------------------chhhh-hccchhhhHHHh
Q psy7557 468 ----EEV--------------------VEEEEGGEDGMEILVGV------------------DLEVV-MEGEEEGEVAIQ 504 (936)
Q Consensus 468 ----~~~--------------------~~~~e~~~~~~~~~~~~------------------~l~~~-~~~e~~~~~~~~ 504 (936)
.+. ...++..++.++...+. ++... .+.+|..+....
T Consensus 578 ~~~L~~~qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~nn~~k~~~se~~iL~lis~aeEfs~ik~R~eE~k~l~el 657 (1230)
T KOG0952|consen 578 AMELDKVQMIRFDERTGYLKSTDLGRVASNYYIKYETMETFNNLPKSFYSEDDILALISMAEEFSQIKVREEEKKELKEL 657 (1230)
T ss_pred HHHhhhhheEEEecccceEcccchhhhhhhhhhhhHHHHHHHhcccccCCHHHHHHHHHhhHhhhhhhhhhhhHHHHHHH
Confidence 000 11112222222222110 00000 223333333333
Q ss_pred hhhh-cccCCCC-------------------CCCc-----------------------------cHHHHHhhccHHHhhh
Q psy7557 505 MINK-IDLGRHI-------------------DPEP-----------------------------TMEELMALSDRKERDK 535 (936)
Q Consensus 505 ~~~~-~~~~~~~-------------------~~~~-----------------------------~~~~~~~~~~~~~~~~ 535 (936)
+... ....... +..+ ..-.++.++++.++++
T Consensus 658 ~~~~~~~~~~~~~~gk~nil~q~~Is~~~~~~f~L~sD~~yv~qna~ri~ralf~i~~~~~~~~~~~~~l~l~k~ier~m 737 (1230)
T KOG0952|consen 658 NEDSCEKYPFGGEKGKVNILLQAYISRTEVKDFSLMSDSLYVAQNAGRISRALFQIVLRQNWHLLSNRMLNLCKRIERRM 737 (1230)
T ss_pred HhcccccccccccchhHHHHHHhhhhccceeeeeeccCcccccccHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 3310 0000000 0000 1115667889999999
Q ss_pred hcccCccccCCccCCh------hhhCCCHHHHHHHHhh------------------------------------------
Q psy7557 536 WAREPKIIKNVYKEDP------EVANMTPEQVEAFRKK------------------------------------------ 567 (936)
Q Consensus 536 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~------------------------------------------ 567 (936)
|....+..+..-..+. ....+...+...+++.
T Consensus 738 w~~~~~l~qf~~~~~~~~~~~~~l~~L~~~~~g~~w~~~~~~~k~l~~ip~v~v~a~~~p~t~~vlri~~~~~~~f~w~~ 817 (1230)
T KOG0952|consen 738 WDFFIPLKQFTLLLNRKERKKLTLLLLRKDELGELWHNVPYGLKQLSGIPLVNVEALIQPITRNVLRIEVAITPDFEWND 817 (1230)
T ss_pred HhhhhhhhcCCcccchhhhhcchHHhhhhhhhccccccCchhhhhhccCCceehhhhhccchhhhheeeeccCCceEEec
Confidence 9887665443322220 1111222111000000
Q ss_pred ----cCCceeeeecCCCCcC------------C--------CCCC--CCCCCc-----------------CCh-------
Q psy7557 568 ----NNDISVSVVTSDGQID------------E--------NPDF--QIPNPV-----------------TSF------- 597 (936)
Q Consensus 568 ----~~~~~~~~~~~~~~~~------------~--------~~~~--~~p~~~-----------------~~f------- 597 (936)
....++.....+.... . ..+. ++|..+ .+|
T Consensus 818 ~~hg~~g~~i~~ed~~~~~i~h~e~~~~~~~~~~~s~~lvf~ipis~pLps~~~~~~~s~~~l~~e~~~~~s~~~~il~~ 897 (1230)
T KOG0952|consen 818 GIHGKAGQPIFKEDSSLLPILHIEVFLVNCKKVNESQLLVFTIPISDPLPSQIRHRAVSDNWLGAETVYPLSFQHLILPD 897 (1230)
T ss_pred ccccccCceeEeecCCCCcceeeeeehhhhhhhhhhhheeEEeecccCCccceEEeeecccccCCceeccccccceeccc
Confidence 0000000000000000 0 0000 011100 011
Q ss_pred -----HHhhcCCHHHHHHHHhC----CCCCCcHHHHHHHHhhh-cCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCcc
Q psy7557 598 -----KQAFQHYPEILRQLENL----SFTTPSPIQAQAWPILM-SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISE 667 (936)
Q Consensus 598 -----~~~~~l~~~~~~~l~~~----g~~~p~~iQ~~ai~~~l-~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~ 667 (936)
.+.+.+.|....+|.+- -+....|+|.+.+..+. ...++++.+|||+|||++|.++++.....
T Consensus 898 ~~~~~t~ll~l~plp~~~L~~~~~e~~~~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~------- 970 (1230)
T KOG0952|consen 898 NEPPLTELLDLRPLPSSALKNVVFEALYKYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSY------- 970 (1230)
T ss_pred cccccccccccCCCcchhhccccHHHhhcccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhcc-------
Confidence 11122222222233222 23456788888888776 45789999999999999999988865533
Q ss_pred CCCCEEEEEecCHHHHHHHHHHHHhc-cCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCC--CCCCCc
Q psy7557 668 RAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRAS--IDLKAV 744 (936)
Q Consensus 668 ~~~~~~lil~Pt~~La~Q~~~~~~~~-~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~--~~~~~i 744 (936)
.++.+++|++|.++|+..-.+.+... ...|++++.+.|....+.. . ...++++|+||++|.++.++|. -.++++
T Consensus 971 ~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~tgd~~pd~~--~-v~~~~~~ittpek~dgi~Rsw~~r~~v~~v 1047 (1230)
T KOG0952|consen 971 YPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIELTGDVTPDVK--A-VREADIVITTPEKWDGISRSWQTRKYVQSV 1047 (1230)
T ss_pred CCCccEEEEcCCchhhcccccchhhhcccCCceeEeccCccCCChh--h-eecCceEEcccccccCccccccchhhhccc
Confidence 56789999999999988766666553 3448999999987766522 2 2347999999999999998763 458999
Q ss_pred eEEEEcccchhccCCCHHHHHH-------HhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEE
Q psy7557 745 SFVVLDEADRMLDLGFEPQINK-------TSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQ 817 (936)
Q Consensus 745 ~~lViDEah~l~~~~~~~~~~~-------i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 817 (936)
+.+|+||.|++.+. ..+.++. +.....+.+|.+++|.- ..+..++++|+...+. .+..+ ...+....-
T Consensus 1048 ~~iv~de~hllg~~-rgPVle~ivsr~n~~s~~t~~~vr~~glsta-~~na~dla~wl~~~~~-~nf~~--svrpvp~~~ 1122 (1230)
T KOG0952|consen 1048 SLIVLDEIHLLGED-RGPVLEVIVSRMNYISSQTEEPVRYLGLSTA-LANANDLADWLNIKDM-YNFRP--SVRPVPLEV 1122 (1230)
T ss_pred cceeecccccccCC-CcceEEEEeeccccCccccCcchhhhhHhhh-hhccHHHHHHhCCCCc-CCCCc--ccccCCceE
Confidence 99999999986553 3333333 33334456677777744 3567778888765554 11111 111111111
Q ss_pred ------EEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHH
Q psy7557 818 ------KIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLA 863 (936)
Q Consensus 818 ------~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~ 863 (936)
...+|+.+..++..........++.+|++||+.++++....+..|.
T Consensus 1123 ~i~gfp~~~~cprm~smnkpa~qaik~~sp~~p~lifv~srrqtrlta~~li 1174 (1230)
T KOG0952|consen 1123 HIDGFPGQHYCPRMMSMNKPAFQAIKTHSPIKPVLIFVSSRRQTRLTALDLI 1174 (1230)
T ss_pred eecCCCchhcchhhhhcccHHHHHHhcCCCCCceEEEeecccccccchHhHH
Confidence 1134444444443333333445788999999999988776666654
No 50
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2.8e-56 Score=508.35 Aligned_cols=337 Identities=38% Similarity=0.653 Sum_probs=302.0
Q ss_pred ChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEE
Q psy7557 596 SFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLV 675 (936)
Q Consensus 596 ~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~li 675 (936)
+|++ +++++.++++|.++||..|||+|.+|||.+++|+|++++||||||||++|++|++..+............+++||
T Consensus 2 ~f~~-l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLi 80 (456)
T PRK10590 2 SFDS-LGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALI 80 (456)
T ss_pred CHHH-cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEE
Confidence 5766 689999999999999999999999999999999999999999999999999999988754322112223468999
Q ss_pred EecCHHHHHHHHHHHHhcc-CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccch
Q psy7557 676 MAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADR 754 (936)
Q Consensus 676 l~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~ 754 (936)
|+||++||.|+.+.++.+. ..++++..++||.+...+...+..+++|+|+||++|.+++....+.++++++|||||||+
T Consensus 81 l~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ 160 (456)
T PRK10590 81 LTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADR 160 (456)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHH
Confidence 9999999999999999874 567899999999999888888888899999999999999988888899999999999999
Q ss_pred hccCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHH
Q psy7557 755 MLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEF 834 (936)
Q Consensus 755 l~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 834 (936)
|++++|...+..++..++...|+++||||++..+..++.+++.+|..+.+.... .....+.+.+.+++...+...+..+
T Consensus 161 ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~l 239 (456)
T PRK10590 161 MLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRN-TASEQVTQHVHFVDKKRKRELLSQM 239 (456)
T ss_pred HhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEeccc-ccccceeEEEEEcCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999887765443 2334567777777777777777776
Q ss_pred HHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEE
Q psy7557 835 FDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHV 914 (936)
Q Consensus 835 l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~V 914 (936)
+... ...++||||+++..++.++..|...++.+..+||+|++++|..+++.|++|+++|||||+++++|||+|+|++|
T Consensus 240 ~~~~--~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~V 317 (456)
T PRK10590 240 IGKG--NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHV 317 (456)
T ss_pred HHcC--CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEE
Confidence 6543 45789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCChhhhHhhhhhccCC
Q psy7557 915 INYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 915 I~~d~p~s~~~yiqr~GRaGR~ 936 (936)
||||+|.+..+|+||+|||||+
T Consensus 318 I~~~~P~~~~~yvqR~GRaGR~ 339 (456)
T PRK10590 318 VNYELPNVPEDYVHRIGRTGRA 339 (456)
T ss_pred EEeCCCCCHHHhhhhccccccC
Confidence 9999999999999999999995
No 51
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=5.3e-56 Score=508.96 Aligned_cols=331 Identities=35% Similarity=0.584 Sum_probs=304.1
Q ss_pred CChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEE
Q psy7557 595 TSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVL 674 (936)
Q Consensus 595 ~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~l 674 (936)
.+|++ +++++.++++|.++||..|||+|.+|||.+++|+|++++||||||||++|++|++..+... ..++++|
T Consensus 4 ~~f~~-l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~------~~~~~~l 76 (460)
T PRK11776 4 TAFST-LPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK------RFRVQAL 76 (460)
T ss_pred CChhh-cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc------cCCceEE
Confidence 46777 6899999999999999999999999999999999999999999999999999999877421 2356899
Q ss_pred EEecCHHHHHHHHHHHHhcc--CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEccc
Q psy7557 675 VMAPTRELATQIEREVNKID--YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEA 752 (936)
Q Consensus 675 il~Pt~~La~Q~~~~~~~~~--~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEa 752 (936)
|++||+|||.|+.+.++.+. ..++++..++||.+...+...+..+++|+|+||++|.+++.++.+.++++++||+|||
T Consensus 77 il~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEa 156 (460)
T PRK11776 77 VLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEA 156 (460)
T ss_pred EEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECH
Confidence 99999999999999999875 3478999999999999998889889999999999999999998888999999999999
Q ss_pred chhccCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHH
Q psy7557 753 DRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLM 832 (936)
Q Consensus 753 h~l~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 832 (936)
|+|++++|...+..+...+++.+|+++||||+|+.+..++..++.+|..+.+.... ....+.+.++.+....|...+.
T Consensus 157 d~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~~~~~k~~~l~ 234 (460)
T PRK11776 157 DRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH--DLPAIEQRFYEVSPDERLPALQ 234 (460)
T ss_pred HHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC--CCCCeeEEEEEeCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988876543 2344777788888888888888
Q ss_pred HHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCC
Q psy7557 833 EFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLT 912 (936)
Q Consensus 833 ~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~ 912 (936)
.++... ...++||||+++..++.++..|...+..+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 235 ~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~ 312 (460)
T PRK11776 235 RLLLHH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALE 312 (460)
T ss_pred HHHHhc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCC
Confidence 888765 356899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCChhhhHhhhhhccCC
Q psy7557 913 HVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 913 ~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
+||+||+|.+..+|+||+|||||+
T Consensus 313 ~VI~~d~p~~~~~yiqR~GRtGR~ 336 (460)
T PRK11776 313 AVINYELARDPEVHVHRIGRTGRA 336 (460)
T ss_pred eEEEecCCCCHhHhhhhcccccCC
Confidence 999999999999999999999995
No 52
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.9e-55 Score=511.09 Aligned_cols=332 Identities=37% Similarity=0.616 Sum_probs=303.0
Q ss_pred CChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEE
Q psy7557 595 TSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVL 674 (936)
Q Consensus 595 ~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~l 674 (936)
.+|.+ +++++.++++|.++||.+|+|+|.++||.++.|+|+|++||||||||++|++|++..+... ..++++|
T Consensus 6 ~~f~~-l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~------~~~~~~L 78 (629)
T PRK11634 6 TTFAD-LGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE------LKAPQIL 78 (629)
T ss_pred CCHhh-cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc------cCCCeEE
Confidence 45877 6899999999999999999999999999999999999999999999999999999776431 3467999
Q ss_pred EEecCHHHHHHHHHHHHhcc--CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEccc
Q psy7557 675 VMAPTRELATQIEREVNKID--YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEA 752 (936)
Q Consensus 675 il~Pt~~La~Q~~~~~~~~~--~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEa 752 (936)
||+||++||.|+++.+..+. ..++.++.++||.+...+...+..+++|+|+||+++.+++.++.+.++++++||||||
T Consensus 79 IL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEA 158 (629)
T PRK11634 79 VLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEA 158 (629)
T ss_pred EEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccH
Confidence 99999999999999999874 2478999999999999888888889999999999999999998889999999999999
Q ss_pred chhccCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHH
Q psy7557 753 DRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLM 832 (936)
Q Consensus 753 h~l~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 832 (936)
|+|++++|...+..++..++...|+++||||+|..+..++..++.+|..+.+..... ....+.+.+..+....|...+.
T Consensus 159 d~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~-~~~~i~q~~~~v~~~~k~~~L~ 237 (629)
T PRK11634 159 DEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVT-TRPDISQSYWTVWGMRKNEALV 237 (629)
T ss_pred HHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccc-cCCceEEEEEEechhhHHHHHH
Confidence 999999999999999999999999999999999999999999999998887765432 3345667777777778888888
Q ss_pred HHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCC
Q psy7557 833 EFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLT 912 (936)
Q Consensus 833 ~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~ 912 (936)
.++... ...++||||+|+..+..++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|+
T Consensus 238 ~~L~~~--~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~ 315 (629)
T PRK11634 238 RFLEAE--DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERIS 315 (629)
T ss_pred HHHHhc--CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCC
Confidence 887754 456899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCChhhhHhhhhhccCC
Q psy7557 913 HVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 913 ~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
+|||||+|.+.++|+||+|||||+
T Consensus 316 ~VI~~d~P~~~e~yvqRiGRtGRa 339 (629)
T PRK11634 316 LVVNYDIPMDSESYVHRIGRTGRA 339 (629)
T ss_pred EEEEeCCCCCHHHHHHHhccccCC
Confidence 999999999999999999999996
No 53
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.3e-55 Score=508.52 Aligned_cols=338 Identities=38% Similarity=0.570 Sum_probs=300.7
Q ss_pred CChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCC-CccCCCCEE
Q psy7557 595 TSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTP-ISERAGPSV 673 (936)
Q Consensus 595 ~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~-~~~~~~~~~ 673 (936)
.+|++ |++++.++++|.++||..|||+|.++||.+++|+|++++||||||||++|++|++..+...... .....++++
T Consensus 9 ~~f~~-l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~ra 87 (572)
T PRK04537 9 LTFSS-FDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRA 87 (572)
T ss_pred CChhh-cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 36877 7899999999999999999999999999999999999999999999999999999887543211 111235799
Q ss_pred EEEecCHHHHHHHHHHHHhcc-CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcC-CCCCCCceEEEEcc
Q psy7557 674 LVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRA-SIDLKAVSFVVLDE 751 (936)
Q Consensus 674 lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~-~~~~~~i~~lViDE 751 (936)
|||+||+|||.|+++.+..+. ..++++..++||.....+...+..+++|+|+||++|.+++.++ .+.++.+++|||||
T Consensus 88 LIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDE 167 (572)
T PRK04537 88 LILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDE 167 (572)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecC
Confidence 999999999999999999885 5578999999999998888888888999999999999998875 46789999999999
Q ss_pred cchhccCCCHHHHHHHhhhcCC--CceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHH
Q psy7557 752 ADRMLDLGFEPQINKTSIYINP--NRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKD 829 (936)
Q Consensus 752 ah~l~~~~~~~~~~~i~~~~~~--~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~ 829 (936)
||+|++++|...+..++..++. .+|+++||||++..+..+...++.+|..+.+.... .....+.+.+.......+..
T Consensus 168 Ah~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~k~~ 246 (572)
T PRK04537 168 ADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETET-ITAARVRQRIYFPADEEKQT 246 (572)
T ss_pred HHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEecccc-ccccceeEEEEecCHHHHHH
Confidence 9999999999999999988875 78999999999999999999999888777665443 23345677777788888888
Q ss_pred HHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCC
Q psy7557 830 WLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVP 909 (936)
Q Consensus 830 ~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip 909 (936)
.+..++... ...++||||+++..|+.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|
T Consensus 247 ~L~~ll~~~--~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip 324 (572)
T PRK04537 247 LLLGLLSRS--EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHID 324 (572)
T ss_pred HHHHHHhcc--cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCcc
Confidence 888877653 467899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 910 DLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 910 ~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
+|++|||||+|.+..+|+||+|||||+
T Consensus 325 ~V~~VInyd~P~s~~~yvqRiGRaGR~ 351 (572)
T PRK04537 325 GVKYVYNYDLPFDAEDYVHRIGRTARL 351 (572)
T ss_pred CCCEEEEcCCCCCHHHHhhhhcccccC
Confidence 999999999999999999999999995
No 54
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=5.5e-55 Score=494.87 Aligned_cols=363 Identities=29% Similarity=0.537 Sum_probs=320.4
Q ss_pred cccChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCE
Q psy7557 73 PVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPS 152 (936)
Q Consensus 73 p~~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~ 152 (936)
.+.+|++ +++++.+.+++.+.||..|+|+|.+||+.+++|+|++++||||||||++|++|++..+... ..+++
T Consensus 26 ~~~~~~~-l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~------~~~~~ 98 (401)
T PTZ00424 26 IVDSFDA-LKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD------LNACQ 98 (401)
T ss_pred ccCCHhh-CCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC------CCCce
Confidence 3568888 6899999999999999999999999999999999999999999999999999999776321 34678
Q ss_pred EEEEcCcHHHHHHHHHHHHhcc-CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEcc
Q psy7557 153 VLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDE 231 (936)
Q Consensus 153 ~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDE 231 (936)
+||++||++||.|+.+.+..+. ..++.+..++||.....+...+..+++|+|+||+++.+++.++...+++++++|+||
T Consensus 99 ~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDE 178 (401)
T PTZ00424 99 ALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDE 178 (401)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEec
Confidence 9999999999999999998874 456788888899888888888888899999999999999988888899999999999
Q ss_pred chhhhcCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCc-hhhHHH
Q psy7557 232 ADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDE-DEKKDW 310 (936)
Q Consensus 232 ah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~k~~~ 310 (936)
||++++.+|...+..+...++++.|++++|||+|+....+...++.+|..+.+..... ....+.+.+..+.. ..+...
T Consensus 179 ah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 257 (401)
T PTZ00424 179 ADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDEL-TLEGIRQFYVAVEKEEWKFDT 257 (401)
T ss_pred HHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCc-ccCCceEEEEecChHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998776655432 23445555555543 335555
Q ss_pred HHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCC
Q psy7557 311 LMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPD 390 (936)
Q Consensus 311 l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~ 390 (936)
+..++... ...++||||+++..++.+++.|...+..+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|+
T Consensus 258 l~~~~~~~--~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~ 335 (401)
T PTZ00424 258 LCDLYETL--TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQ 335 (401)
T ss_pred HHHHHHhc--CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCccc
Confidence 66655543 4578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHhhcC
Q psy7557 391 LTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEGG 445 (936)
Q Consensus 391 v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~ 445 (936)
+++||+||+|.+..+|+||+|||||.|+.|.|++|+++++...+..+.+.+....
T Consensus 336 v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~ 390 (401)
T PTZ00424 336 VSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQI 390 (401)
T ss_pred CCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcc
Confidence 9999999999999999999999999999999999999999888888877666443
No 55
>KOG0346|consensus
Probab=100.00 E-value=3.3e-56 Score=455.46 Aligned_cols=340 Identities=29% Similarity=0.458 Sum_probs=312.5
Q ss_pred CChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEE
Q psy7557 595 TSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVL 674 (936)
Q Consensus 595 ~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~l 674 (936)
.+|++ |+|++.+++++.++||..||-||+.|||.++.|+|+++.|.||||||+||++|+++.++..........++.++
T Consensus 19 ktFe~-~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~ 97 (569)
T KOG0346|consen 19 KTFEE-FGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAV 97 (569)
T ss_pred ccHHH-hCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeE
Confidence 47887 89999999999999999999999999999999999999999999999999999999988766554567899999
Q ss_pred EEecCHHHHHHHHHHHHhc---cCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCC-CCCCCceEEEEc
Q psy7557 675 VMAPTRELATQIEREVNKI---DYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRAS-IDLKAVSFVVLD 750 (936)
Q Consensus 675 il~Pt~~La~Q~~~~~~~~---~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~-~~~~~i~~lViD 750 (936)
|++||+|||+|++..+.++ +...++++-+....+.......+...++|+|+||+++..++..+. ..+..+.++|+|
T Consensus 98 iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvD 177 (569)
T KOG0346|consen 98 ILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVD 177 (569)
T ss_pred EEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEec
Confidence 9999999999999999886 455777777776666666667777789999999999999998876 568899999999
Q ss_pred ccchhccCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHH
Q psy7557 751 EADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDW 830 (936)
Q Consensus 751 Eah~l~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 830 (936)
|||.++..||...+..+...+|+..|.+++|||++.++..+-+.++.+|+.+.....+......+.|+.+.|.+.+|+-.
T Consensus 178 EADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKfll 257 (569)
T KOG0346|consen 178 EADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLL 257 (569)
T ss_pred hhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999988888888899999999999898887
Q ss_pred HHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecc----------
Q psy7557 831 LMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATD---------- 900 (936)
Q Consensus 831 l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~---------- 900 (936)
++.++.-. --.+++|||+|+.+.|..+.-.|.+.|++.|.++|.|+..-|..+++.|..|-.+++||||
T Consensus 258 lyallKL~-LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~ee 336 (569)
T KOG0346|consen 258 LYALLKLR-LIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEE 336 (569)
T ss_pred HHHHHHHH-HhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhc
Confidence 77766543 3468899999999999999999999999999999999999999999999999999999999
Q ss_pred -------------------------cCccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 901 -------------------------VASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 901 -------------------------~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
-.+||||+.+|.+|+|||+|.+...||||+|||+|+
T Consensus 337 e~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg 397 (569)
T KOG0346|consen 337 EVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARG 397 (569)
T ss_pred cccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccC
Confidence 246999999999999999999999999999999996
No 56
>KOG0347|consensus
Probab=100.00 E-value=3.4e-57 Score=474.29 Aligned_cols=341 Identities=32% Similarity=0.481 Sum_probs=291.0
Q ss_pred CCCcCChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcC-CcEEEEecCCCCcchhhHHHHHHHhhccCCC-----
Q psy7557 591 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSG-HDMIGIAQTGTGKTFAFLLPALIHTHLQTTP----- 664 (936)
Q Consensus 591 p~~~~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g-~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~----- 664 (936)
+-.+..|.+ |.++++++++|.++||..|||||..++|.++.| .|+++.|.||||||+||.+|++..+......
T Consensus 177 ~~DvsAW~~-l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~ 255 (731)
T KOG0347|consen 177 KVDVSAWKN-LFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELS 255 (731)
T ss_pred ccChHHHhc-CCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhh
Confidence 344556666 589999999999999999999999999999999 6999999999999999999999844332211
Q ss_pred --CccCCCCEEEEEecCHHHHHHHHHHHHhcc-CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCC--
Q psy7557 665 --ISERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASI-- 739 (936)
Q Consensus 665 --~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~-- 739 (936)
..++..+.+||++||||||.|+.+.+..+. ..++++..++||.....|.+.|...++|||||||||+.++..+..
T Consensus 256 ~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l 335 (731)
T KOG0347|consen 256 NTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHL 335 (731)
T ss_pred hHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhh
Confidence 112334469999999999999999999874 679999999999999999999999999999999999999987654
Q ss_pred -CCCCceEEEEcccchhccCCCHHHHHHHhhhcC-----CCceEEEEEecCChH---------------------HHHHH
Q psy7557 740 -DLKAVSFVVLDEADRMLDLGFEPQINKTSIYIN-----PNRQTVMTSATWNKD---------------------VQRVA 792 (936)
Q Consensus 740 -~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~~-----~~~q~v~~SAT~~~~---------------------~~~~~ 792 (936)
++++++++|+||+|+|++.|+...+..++..+. +.+|++.||||++-. ++.+.
T Consensus 336 ~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lm 415 (731)
T KOG0347|consen 336 GNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLM 415 (731)
T ss_pred hhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHH
Confidence 578999999999999999998888888877764 568999999997422 22233
Q ss_pred HH--hcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceE
Q psy7557 793 KK--YMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSC 870 (936)
Q Consensus 793 ~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~ 870 (936)
+. +..+|..+...+.. .....+....+.|+..+|..+|++++..+ .+++|||||++..+..|+..|...++...
T Consensus 416 k~ig~~~kpkiiD~t~q~-~ta~~l~Es~I~C~~~eKD~ylyYfl~ry---PGrTlVF~NsId~vKRLt~~L~~L~i~p~ 491 (731)
T KOG0347|consen 416 KKIGFRGKPKIIDLTPQS-ATASTLTESLIECPPLEKDLYLYYFLTRY---PGRTLVFCNSIDCVKRLTVLLNNLDIPPL 491 (731)
T ss_pred HHhCccCCCeeEecCcch-hHHHHHHHHhhcCCccccceeEEEEEeec---CCceEEEechHHHHHHHHHHHhhcCCCCc
Confidence 33 22456666555543 34445555566778888888888888776 57899999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 871 SLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 871 ~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
.+|+.|.|++|.+.+++|++....|||||||++||+|||+|.|||||.+|.+.+-|+||.|||+||
T Consensus 492 ~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA 557 (731)
T KOG0347|consen 492 PLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARA 557 (731)
T ss_pred hhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999996
No 57
>KOG0332|consensus
Probab=100.00 E-value=1.9e-55 Score=441.33 Aligned_cols=360 Identities=31% Similarity=0.491 Sum_probs=315.3
Q ss_pred CcccChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcC--CcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCC
Q psy7557 72 NPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSG--HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERA 149 (936)
Q Consensus 72 ~p~~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g--~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~ 149 (936)
-.+.||++ ++|.|++++++..++|.+|+.||..|+|.++.. +|+|..+.+|+|||.||.+.+|.++.. ...
T Consensus 87 yS~ksFee-L~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~------~~~ 159 (477)
T KOG0332|consen 87 YSAKSFEE-LRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDP------DVV 159 (477)
T ss_pred cccccHHh-hCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCc------ccc
Confidence 46789999 699999999999999999999999999999976 799999999999999999999987743 245
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHhcc-CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHc-CCcCCCCceEE
Q psy7557 150 GPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSR-ASIDLKAVSFV 227 (936)
Q Consensus 150 ~~~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~~~l 227 (936)
.|+++.|+||||||.|+-+.+.+++ ..++++.....|....+- -.-..+|+|+|||.+.|++.+ +.+.++.++.+
T Consensus 160 ~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG---~~i~eqIviGTPGtv~Dlm~klk~id~~kikvf 236 (477)
T KOG0332|consen 160 VPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRG---NKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVF 236 (477)
T ss_pred CCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccC---CcchhheeeCCCccHHHHHHHHHhhChhhceEE
Confidence 7899999999999999999999985 346777776665411110 000158999999999999988 78899999999
Q ss_pred EEccchhhhc-CCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeC-ch
Q psy7557 228 VLDEADRMLD-LGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD-ED 305 (936)
Q Consensus 228 ViDEah~l~~-~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~ 305 (936)
|+||||.|++ .||.++-.+|...++++.|+++||||+...+..++.....++..+.+...+.. ..++.|.++.|. ..
T Consensus 237 VlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~-L~~IkQlyv~C~~~~ 315 (477)
T KOG0332|consen 237 VLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELA-LDNIKQLYVLCACRD 315 (477)
T ss_pred EecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhcc-ccchhhheeeccchh
Confidence 9999999987 67999999999999999999999999999999999999999998888877754 456777776665 56
Q ss_pred hhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccC
Q psy7557 306 EKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRG 385 (936)
Q Consensus 306 ~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~G 385 (936)
+|.+.|.++.... .-++.||||.|+++|.+++..|...|+.+..+||+|.-.+|..+++.|+.|+.+|||+|++++||
T Consensus 316 ~K~~~l~~lyg~~--tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARG 393 (477)
T KOG0332|consen 316 DKYQALVNLYGLL--TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARG 393 (477)
T ss_pred hHHHHHHHHHhhh--hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcc
Confidence 7888888866554 56899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEecCCC------CccccccCCCCcccCCCceeEEEEeccc-ChhhHHhHHHHHhhc
Q psy7557 386 LDVPDLTHVINYDFPS------HIEEYVHRVGRTGRAGKSGESITLMTRK-DWSHAHEIIPILEEG 444 (936)
Q Consensus 386 iDip~v~~VI~~d~p~------s~~~y~qr~GRagR~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~ 444 (936)
||++.|++|||||+|. +.++|+||+|||||.|+.|.++.|++.+ .+..+..+.+++...
T Consensus 394 iDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~ 459 (477)
T KOG0332|consen 394 IDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMK 459 (477)
T ss_pred cccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhc
Confidence 9999999999999995 7899999999999999999999999875 466666777777544
No 58
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=3.7e-54 Score=490.92 Aligned_cols=335 Identities=34% Similarity=0.558 Sum_probs=298.3
Q ss_pred ChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEE
Q psy7557 596 SFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLV 675 (936)
Q Consensus 596 ~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~li 675 (936)
+|++ +++++.+++.|.++||..|+|+|.++|+.++.|+|++++||||||||++|++|++.++.... .....++++||
T Consensus 2 ~f~~-l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~--~~~~~~~~~li 78 (434)
T PRK11192 2 TFSE-LELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFP--RRKSGPPRILI 78 (434)
T ss_pred CHhh-cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcc--ccCCCCceEEE
Confidence 4776 78999999999999999999999999999999999999999999999999999998876432 22234579999
Q ss_pred EecCHHHHHHHHHHHHhcc-CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccch
Q psy7557 676 MAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADR 754 (936)
Q Consensus 676 l~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~ 754 (936)
++||++||.|+.+.+..+. ..++++..++||.....+...+..+++|+|+||++|.+++.+..+.++++++|||||||+
T Consensus 79 l~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~ 158 (434)
T PRK11192 79 LTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADR 158 (434)
T ss_pred ECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHH
Confidence 9999999999999999874 567899999999998888888888899999999999999999888899999999999999
Q ss_pred hccCCCHHHHHHHhhhcCCCceEEEEEecCCh-HHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCc-chhHHHHH
Q psy7557 755 MLDLGFEPQINKTSIYINPNRQTVMTSATWNK-DVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDE-DEKKDWLM 832 (936)
Q Consensus 755 l~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~ 832 (936)
|++++|...+..+...++...|+++||||++. .+..+...++.+|..+...... .....+.+.+..++. ..+...+.
T Consensus 159 ~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~~k~~~l~ 237 (434)
T PRK11192 159 MLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSR-RERKKIHQWYYRADDLEHKTALLC 237 (434)
T ss_pred HhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCc-ccccCceEEEEEeCCHHHHHHHHH
Confidence 99999999999999999889999999999985 5788888899999888776543 233445666655553 56677777
Q ss_pred HHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCC
Q psy7557 833 EFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLT 912 (936)
Q Consensus 833 ~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~ 912 (936)
.++... ...++||||+++..|+.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+++
T Consensus 238 ~l~~~~--~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~ 315 (434)
T PRK11192 238 HLLKQP--EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVS 315 (434)
T ss_pred HHHhcC--CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCC
Confidence 776642 457899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCChhhhHhhhhhccCC
Q psy7557 913 HVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 913 ~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
+|||||+|.+..+|+||+|||||+
T Consensus 316 ~VI~~d~p~s~~~yiqr~GR~gR~ 339 (434)
T PRK11192 316 HVINFDMPRSADTYLHRIGRTGRA 339 (434)
T ss_pred EEEEECCCCCHHHHhhcccccccC
Confidence 999999999999999999999995
No 59
>KOG0348|consensus
Probab=100.00 E-value=1.9e-55 Score=459.82 Aligned_cols=344 Identities=33% Similarity=0.510 Sum_probs=296.3
Q ss_pred CCcCChHHhhcCCHHHHHHHHh-CCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCC
Q psy7557 592 NPVTSFKQAFQHYPEILRQLEN-LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAG 670 (936)
Q Consensus 592 ~~~~~f~~~~~l~~~~~~~l~~-~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~ 670 (936)
-.-..|.. +++++.+...|+. +++..||.+|.++||.++.|+|+++.|+||||||++|++|+++.+........+..|
T Consensus 133 fts~~f~~-LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G 211 (708)
T KOG0348|consen 133 FTSAAFAS-LGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDG 211 (708)
T ss_pred cccccchh-cCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCC
Confidence 33456777 7999999999865 799999999999999999999999999999999999999999999877666667889
Q ss_pred CEEEEEecCHHHHHHHHHHHHhccCC--CCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcC-CCCCCCceEE
Q psy7557 671 PSVLVMAPTRELATQIEREVNKIDYK--GLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRA-SIDLKAVSFV 747 (936)
Q Consensus 671 ~~~lil~Pt~~La~Q~~~~~~~~~~~--~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~-~~~~~~i~~l 747 (936)
+.+|||+||||||.|+++.++++... =+.-+.+.||.........|++|++|+|+|||||.+++.+- .+.++++++|
T Consensus 212 ~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwl 291 (708)
T KOG0348|consen 212 PYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWL 291 (708)
T ss_pred ceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEE
Confidence 99999999999999999999998422 24456788999888888999999999999999999999875 5678999999
Q ss_pred EEcccchhccCCCHHHHHHHhhhcC-------------CCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCC-------
Q psy7557 748 VLDEADRMLDLGFEPQINKTSIYIN-------------PNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSL------- 807 (936)
Q Consensus 748 ViDEah~l~~~~~~~~~~~i~~~~~-------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~------- 807 (936)
|+||+|++++.||...+..|+..+. +..|-+++|||++..+.+++...+.+|+.+.....
T Consensus 292 VlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~ 371 (708)
T KOG0348|consen 292 VLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPK 371 (708)
T ss_pred EecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcc
Confidence 9999999999999999999887762 24688999999999999999999999998872110
Q ss_pred -----------------CcccCCceEEEEEEcCcchhHHHHHHHHHhc--cCCCCcEEEEcCChHHHHHHHHHHHhc---
Q psy7557 808 -----------------DLAATHTVTQKIIILDEDEKKDWLMEFFDNM--DEERDKVMVFMGRKASVSAMSSDLACQ--- 865 (936)
Q Consensus 808 -----------------~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~~~~iIF~~s~~~~~~l~~~L~~~--- 865 (936)
....+..+.|.+.+++...+.-.|..++.+. .....++|||+++.+.++.-+..|.+.
T Consensus 372 ~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~ 451 (708)
T KOG0348|consen 372 DKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLS 451 (708)
T ss_pred hhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhc
Confidence 0233445667788888877777777666554 234558999999999999999888742
Q ss_pred -------------------CCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEEccCCCChhhh
Q psy7557 866 -------------------YRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEY 926 (936)
Q Consensus 866 -------------------~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~y 926 (936)
..+..-+||+|+|++|..++..|...+-.||+||||++||+|+|+|.+||+||+|.+..+|
T Consensus 452 ~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~ady 531 (708)
T KOG0348|consen 452 HLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADY 531 (708)
T ss_pred ccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHH
Confidence 1245669999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhccCC
Q psy7557 927 VHRVGRTGEF 936 (936)
Q Consensus 927 iqr~GRaGR~ 936 (936)
+||+|||.|+
T Consensus 532 lHRvGRTARa 541 (708)
T KOG0348|consen 532 LHRVGRTARA 541 (708)
T ss_pred HHHhhhhhhc
Confidence 9999999985
No 60
>KOG0344|consensus
Probab=100.00 E-value=7.9e-55 Score=464.96 Aligned_cols=382 Identities=31% Similarity=0.464 Sum_probs=330.0
Q ss_pred CCCCCCCcccChHHh---hcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCC
Q psy7557 66 PDFQIPNPVTSFKQA---FQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQT 142 (936)
Q Consensus 66 ~~~~~p~p~~~f~~~---~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~ 142 (936)
.++++|.|+.+|.+. +..++.+++++...||..|+|+|.+|+|.++.++|+++|||||||||++|.+|++.++....
T Consensus 123 ~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~ 202 (593)
T KOG0344|consen 123 DGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLS 202 (593)
T ss_pred cCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhh
Confidence 357889999999863 55678899999999999999999999999999999999999999999999999999986543
Q ss_pred CCCCCCCCCEEEEEcCcHHHHHHHHHHHHhccC---CCCEEEEEeCCcc-chHHHHHhhcCCcEEEeCCchhHHHHHcCC
Q psy7557 143 TPISERAGPSVLVMAPTRELATQIEREVNKIDY---KGLKAVCVYGGKE-IEPQLEKIREGCHILIATPGRLNDFVSRAS 218 (936)
Q Consensus 143 ~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~---~~~~~~~~~gg~~-~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~ 218 (936)
. .....|-+++|+.|||+||.|+++++.+|.. .+.++........ ...........++|+|+||-++..++..+.
T Consensus 203 ~-~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~ 281 (593)
T KOG0344|consen 203 Q-EKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGK 281 (593)
T ss_pred c-ccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCC
Confidence 2 1224578999999999999999999999862 2344433322211 111111222237999999999999988775
Q ss_pred --cCCCCceEEEEccchhhhcC-CCHHHHHHHHhhcC-CCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCc
Q psy7557 219 --IDLKAVSFVVLDEADRMLDL-GFEPQINKTSIYIN-PNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHT 294 (936)
Q Consensus 219 --~~~~~~~~lViDEah~l~~~-~~~~~~~~i~~~~~-~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 294 (936)
+.+..+.++|+||||++++. +|..++..|...+. ++..+-+||||++.++++.+...+.++..+.++..+. ....
T Consensus 282 ~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~s-a~~~ 360 (593)
T KOG0344|consen 282 LNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNS-ANET 360 (593)
T ss_pred ccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchh-Hhhh
Confidence 77999999999999999998 89999999987764 6788889999999999999999999999999887764 3566
Q ss_pred eEEEEEEeC-chhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHh-hhcCCceeeecCCCCHHHHHHHHHHhhcCC
Q psy7557 295 VTQKIIILD-EDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDL-ACQYRKSCSLYGDLSQEDREIALEDITSGY 372 (936)
Q Consensus 295 ~~~~~~~~~-~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L-~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~ 372 (936)
+.|..++|. +..|+-.+.+++... -.++++||+.+...|..|+..| ...++.+.++||..++.+|..+++.|+.|+
T Consensus 361 V~QelvF~gse~~K~lA~rq~v~~g--~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~ 438 (593)
T KOG0344|consen 361 VDQELVFCGSEKGKLLALRQLVASG--FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGK 438 (593)
T ss_pred hhhhheeeecchhHHHHHHHHHhcc--CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccC
Confidence 777766655 556777777777764 6789999999999999999999 788999999999999999999999999999
Q ss_pred cEEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHhhcCCccchh
Q psy7557 373 ARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEGGHESYMI 451 (936)
Q Consensus 373 ~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 451 (936)
++||+||++++||+|+.++++|||||+|.+..+|+||+||+||+|+.|.|++|++..|....+.+.+.++.+|.++|.-
T Consensus 439 IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~sG~evpe~ 517 (593)
T KOG0344|consen 439 IWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQSGCEVPEK 517 (593)
T ss_pred eeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHHcCCcchHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999864
No 61
>KOG0327|consensus
Probab=100.00 E-value=1e-54 Score=441.64 Aligned_cols=369 Identities=32% Similarity=0.519 Sum_probs=335.5
Q ss_pred CCCCcccChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCC
Q psy7557 69 QIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISER 148 (936)
Q Consensus 69 ~~p~p~~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~ 148 (936)
++-.-+.||++ ++|.+++++.+...||.+|+.||++||+.+..|.|+++.+++|+|||.+|.++++..+... .
T Consensus 20 n~~evvdsfdd-m~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~------~ 92 (397)
T KOG0327|consen 20 NWNEVVDSFDD-MNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS------V 92 (397)
T ss_pred cHHHHhhhhhh-cCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcc------h
Confidence 45556779998 6999999999999999999999999999999999999999999999999999999887332 3
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHhcc-CCCCEEEEEeCCccchHHHHHhhc-CCcEEEeCCchhHHHHHcCCcCCCCceE
Q psy7557 149 AGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIRE-GCHILIATPGRLNDFVSRASIDLKAVSF 226 (936)
Q Consensus 149 ~~~~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~ 226 (936)
....+++++|||+||.|+.+....++ ..+.++..+.||.....+..++.. +++|+|+|||++.+++....+..+.+++
T Consensus 93 ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKm 172 (397)
T KOG0327|consen 93 KETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKM 172 (397)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeE
Confidence 45689999999999999998888875 567888888898887755555544 4899999999999999999888889999
Q ss_pred EEEccchhhhcCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchh
Q psy7557 227 VVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDE 306 (936)
Q Consensus 227 lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 306 (936)
+|+||||.|+..||..++..++..++++.|++++|||+|+++..+.+.++.+|+.+.+...+.. ...++|.++.+...+
T Consensus 173 fvlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~lt-l~gikq~~i~v~k~~ 251 (397)
T KOG0327|consen 173 FVLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELT-LEGIKQFYINVEKEE 251 (397)
T ss_pred EeecchHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhh-hhheeeeeeeccccc
Confidence 9999999999999999999999999999999999999999999999999999999999888755 567888888888888
Q ss_pred hHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCC
Q psy7557 307 KKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGL 386 (936)
Q Consensus 307 k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gi 386 (936)
|...|.++.+. -.+.+||||++..+..+...|..+++.+..+||+|.+.+|..+++.|+.|..+|||.|+.++||+
T Consensus 252 k~~~l~dl~~~----~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argi 327 (397)
T KOG0327|consen 252 KLDTLCDLYRR----VTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGI 327 (397)
T ss_pred cccHHHHHHHh----hhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeecccccccc
Confidence 99999998883 47899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHhhcCCccc
Q psy7557 387 DVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEGGHESY 449 (936)
Q Consensus 387 Dip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 449 (936)
|+-+++.|||||+|....+|+||+||+||.|++|.++.+++..|...++++.+++...-.+.|
T Consensus 328 dv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p 390 (397)
T KOG0327|consen 328 DVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELP 390 (397)
T ss_pred chhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecc
Confidence 999999999999999999999999999999999999999999999988888876654433333
No 62
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.3e-53 Score=484.53 Aligned_cols=340 Identities=38% Similarity=0.627 Sum_probs=299.9
Q ss_pred CcCChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCc-cCCCC
Q psy7557 593 PVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS-ERAGP 671 (936)
Q Consensus 593 ~~~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~-~~~~~ 671 (936)
...+|.+ +++++.++++|.++||..|+|+|.++|+.+++|+|++++||||||||++|++|++..+........ ...++
T Consensus 85 ~~~~f~~-~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~ 163 (475)
T PRK01297 85 GKTRFHD-FNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEP 163 (475)
T ss_pred CCCCHhH-CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCc
Confidence 3457777 689999999999999999999999999999999999999999999999999999988765322111 12257
Q ss_pred EEEEEecCHHHHHHHHHHHHhcc-CCCCEEEEEECCccchHHHHHHhc-CceEEEeCchHHHHHHHcCCCCCCCceEEEE
Q psy7557 672 SVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIRE-GCHILIATPGRLNDFVSRASIDLKAVSFVVL 749 (936)
Q Consensus 672 ~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~-~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lVi 749 (936)
++|||+||++||.|+.+.++.+. ..++++..++||.+...+...+.. .++|+|+||++|.+++.++...++++++|||
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lVi 243 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVL 243 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEe
Confidence 99999999999999999999884 557899999999888877777654 5899999999999999988889999999999
Q ss_pred cccchhccCCCHHHHHHHhhhcCC--CceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchh
Q psy7557 750 DEADRMLDLGFEPQINKTSIYINP--NRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEK 827 (936)
Q Consensus 750 DEah~l~~~~~~~~~~~i~~~~~~--~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k 827 (936)
||||++++++|...+..+...++. ..|++++|||++.++..++..++.+|..+.+..... ....+.+.+..+....+
T Consensus 244 DEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~k 322 (475)
T PRK01297 244 DEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENV-ASDTVEQHVYAVAGSDK 322 (475)
T ss_pred chHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcC-CCCcccEEEEEecchhH
Confidence 999999999999999999888753 579999999999999999999999998887765442 23345666677777778
Q ss_pred HHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCC
Q psy7557 828 KDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLD 907 (936)
Q Consensus 828 ~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gid 907 (936)
...+..++... ...++||||+++..++.++..|...++.+..+||++++++|.++++.|++|+++|||||+++++|||
T Consensus 323 ~~~l~~ll~~~--~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GID 400 (475)
T PRK01297 323 YKLLYNLVTQN--PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIH 400 (475)
T ss_pred HHHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCc
Confidence 88888777653 4568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 908 VPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 908 ip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
+|++++||+||+|.|..+|+||+|||||+
T Consensus 401 i~~v~~VI~~~~P~s~~~y~Qr~GRaGR~ 429 (475)
T PRK01297 401 IDGISHVINFTLPEDPDDYVHRIGRTGRA 429 (475)
T ss_pred ccCCCEEEEeCCCCCHHHHHHhhCccCCC
Confidence 99999999999999999999999999995
No 63
>KOG0337|consensus
Probab=100.00 E-value=6.1e-54 Score=436.91 Aligned_cols=360 Identities=33% Similarity=0.536 Sum_probs=332.1
Q ss_pred ChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEE
Q psy7557 76 SFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLV 155 (936)
Q Consensus 76 ~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~li 155 (936)
+|.. ++|+..+++++.+.||+.|||+|++.||.++.|+|++..|.||||||.||++|+++++.... ..|.++++
T Consensus 22 ~fqs-mgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-----~~g~Rali 95 (529)
T KOG0337|consen 22 GFQS-MGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-----QTGLRALI 95 (529)
T ss_pred Cccc-cCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-----ccccceee
Confidence 4554 79999999999999999999999999999999999999999999999999999999986542 45789999
Q ss_pred EcCcHHHHHHHHHHHHhcc-CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchh
Q psy7557 156 MAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADR 234 (936)
Q Consensus 156 l~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~ 234 (936)
++|||+||.|..+.++.++ ..+++..+++||....+++..+..++|||+|||+++.++.-.-.+.++.+.|+|+||||+
T Consensus 96 lsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadr 175 (529)
T KOG0337|consen 96 LSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADR 175 (529)
T ss_pred ccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhH
Confidence 9999999999999999985 568899999999999999999999999999999999888777778899999999999999
Q ss_pred hhcCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHH
Q psy7557 235 MLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEF 314 (936)
Q Consensus 235 l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 314 (936)
++++||.+++.+++..++.++|+++||||+|..+-++++..+.+|+.+.++... .....+...+..+...+|...|+.+
T Consensus 176 lfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvet-kise~lk~~f~~~~~a~K~aaLl~i 254 (529)
T KOG0337|consen 176 LFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVET-KISELLKVRFFRVRKAEKEAALLSI 254 (529)
T ss_pred HHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhh-hcchhhhhheeeeccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988855433 4556677788889999999999998
Q ss_pred HHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEE
Q psy7557 315 FDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHV 394 (936)
Q Consensus 315 l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~V 394 (936)
+... ...++++|||.|+..++.+...|...|+.+..++|.|++..|..-+.+|+.++..+||.||+++||+|+|-.+.|
T Consensus 255 l~~~-~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnv 333 (529)
T KOG0337|consen 255 LGGR-IKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNV 333 (529)
T ss_pred Hhcc-ccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCcccccc
Confidence 8876 335689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHhh
Q psy7557 395 INYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEE 443 (936)
Q Consensus 395 I~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 443 (936)
||||+|.+...|+||+||+.|+|+.|.+|.++...+...+-+|-..+.+
T Consensus 334 inyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr 382 (529)
T KOG0337|consen 334 INYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGR 382 (529)
T ss_pred ccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCC
Confidence 9999999999999999999999999999999999998877777666654
No 64
>KOG4284|consensus
Probab=100.00 E-value=1.7e-53 Score=452.88 Aligned_cols=356 Identities=29% Similarity=0.461 Sum_probs=320.2
Q ss_pred CCcccChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCC
Q psy7557 71 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAG 150 (936)
Q Consensus 71 p~p~~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~ 150 (936)
|.-...|++ +.+...++..|+..+|..||++|..|||.++.+.|+|+.|.+|+|||++|.+.++..+... ...
T Consensus 21 ~~~~~~fe~-l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~------~~~ 93 (980)
T KOG4284|consen 21 SNCTPGFEQ-LALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR------SSH 93 (980)
T ss_pred cCCCCCHHH-HHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcc------cCc
Confidence 444557888 5788999999999999999999999999999999999999999999999999888766432 457
Q ss_pred CEEEEEcCcHHHHHHHHHHHHhccC--CCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEE
Q psy7557 151 PSVLVMAPTRELATQIEREVNKIDY--KGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVV 228 (936)
Q Consensus 151 ~~~lil~Pt~~La~Q~~~~~~~~~~--~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lV 228 (936)
++++|++||||+|.|+.+.+.+++. .|+++....||........+++. ++|+||||||+..++..+.++.+.++++|
T Consensus 94 ~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n~s~vrlfV 172 (980)
T KOG4284|consen 94 IQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMNMSHVRLFV 172 (980)
T ss_pred ceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCCccceeEEE
Confidence 8999999999999999999999865 79999999999998888777755 89999999999999999999999999999
Q ss_pred Eccchhhhc-CCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCch--
Q psy7557 229 LDEADRMLD-LGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDED-- 305 (936)
Q Consensus 229 iDEah~l~~-~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-- 305 (936)
+||||.|++ ..|..++..|...+|..+|+++||||.|.++.+.+.+||.+|..+.....+. ....++|.+..+...
T Consensus 173 LDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~-~L~GikQyv~~~~s~nn 251 (980)
T KOG4284|consen 173 LDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDV-QLFGIKQYVVAKCSPNN 251 (980)
T ss_pred eccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCc-eeechhheeeeccCCcc
Confidence 999999998 5599999999999999999999999999999999999999999998777653 345577776655442
Q ss_pred ------hhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEe
Q psy7557 306 ------EKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVAT 379 (936)
Q Consensus 306 ------~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT 379 (936)
.|...|-.++... +..+.||||+....|+.++..|...|+.+.++.|.|+|.+|..+++.++.-.++|||+|
T Consensus 252 sveemrlklq~L~~vf~~i--py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsT 329 (980)
T KOG4284|consen 252 SVEEMRLKLQKLTHVFKSI--PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVST 329 (980)
T ss_pred hHHHHHHHHHHHHHHHhhC--chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEec
Confidence 3667777777775 56799999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccCh-hhHHhH
Q psy7557 380 DVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDW-SHAHEI 437 (936)
Q Consensus 380 ~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~-~~~~~l 437 (936)
|.-+||||-|+|++|||.|+|.+.++|.||||||||.|..|.+++|+..... +.+..+
T Consensus 330 DLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 330 DLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred chhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHH
Confidence 9999999999999999999999999999999999999999999999987643 555555
No 65
>KOG0332|consensus
Probab=100.00 E-value=6.9e-53 Score=422.87 Aligned_cols=331 Identities=31% Similarity=0.514 Sum_probs=290.8
Q ss_pred CcCChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcC--CcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCC
Q psy7557 593 PVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSG--HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAG 670 (936)
Q Consensus 593 ~~~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g--~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~ 670 (936)
.+.+|++ ++|.|++++.|+.++|+.|+.||..|+|.++.. +|+|+++..|+|||.||.+.|+.++.. ....
T Consensus 88 S~ksFee-L~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~------~~~~ 160 (477)
T KOG0332|consen 88 SAKSFEE-LRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDP------DVVV 160 (477)
T ss_pred ccccHHh-hCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCc------cccC
Confidence 4578999 799999999999999999999999999999975 799999999999999999999987743 2457
Q ss_pred CEEEEEecCHHHHHHHHHHHHhccC-CCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHc-CCCCCCCceEEE
Q psy7557 671 PSVLVMAPTRELATQIEREVNKIDY-KGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSR-ASIDLKAVSFVV 748 (936)
Q Consensus 671 ~~~lil~Pt~~La~Q~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~-~~~~~~~i~~lV 748 (936)
|.++.|+||||||.|+.+.+.+++. .+++....+.|....+. ..+ ..+|+|+||+.+.+++.. ..+.+..++.+|
T Consensus 161 PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG-~~i--~eqIviGTPGtv~Dlm~klk~id~~kikvfV 237 (477)
T KOG0332|consen 161 PQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRG-NKL--TEQIVIGTPGTVLDLMLKLKCIDLEKIKVFV 237 (477)
T ss_pred CCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccC-Ccc--hhheeeCCCccHHHHHHHHHhhChhhceEEE
Confidence 8999999999999999999999863 35666666655521111 111 158999999999999988 778899999999
Q ss_pred Ecccchhcc-CCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEc-Ccch
Q psy7557 749 LDEADRMLD-LGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIIL-DEDE 826 (936)
Q Consensus 749 iDEah~l~~-~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~ 826 (936)
+||||.|++ .||..+-..|...++++.|+++||||+...+..++.+..++|..+.+...+.... .+.|.+..| .+..
T Consensus 238 lDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~-~IkQlyv~C~~~~~ 316 (477)
T KOG0332|consen 238 LDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALD-NIKQLYVLCACRDD 316 (477)
T ss_pred ecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhcccc-chhhheeeccchhh
Confidence 999999986 5799999999999999999999999999999999999999999998888776554 456665555 5678
Q ss_pred hHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCC
Q psy7557 827 KKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGL 906 (936)
Q Consensus 827 k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gi 906 (936)
|.+.|.++.... .-+..||||.|+..|..++..+...|+.+.++||+|+-.+|..+++.|+.|..+|||+|++++|||
T Consensus 317 K~~~l~~lyg~~--tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGi 394 (477)
T KOG0332|consen 317 KYQALVNLYGLL--TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGI 394 (477)
T ss_pred HHHHHHHHHhhh--hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhccc
Confidence 889898876655 457899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEccCC------CChhhhHhhhhhccCC
Q psy7557 907 DVPDLTHVINYDFP------SHIEEYVHRVGRTGEF 936 (936)
Q Consensus 907 dip~v~~VI~~d~p------~s~~~yiqr~GRaGR~ 936 (936)
|++.|++|||||+| .+.++|+||+|||||+
T Consensus 395 Dv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRF 430 (477)
T KOG0332|consen 395 DVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRF 430 (477)
T ss_pred ccceEEEEEecCCccccCCCCCHHHHHHHhcccccc
Confidence 99999999999999 5789999999999997
No 66
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=3.7e-51 Score=463.57 Aligned_cols=334 Identities=30% Similarity=0.561 Sum_probs=293.8
Q ss_pred CcCChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCE
Q psy7557 593 PVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPS 672 (936)
Q Consensus 593 ~~~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~ 672 (936)
...+|++ +++++.+.++|.++||..|+|+|.+||+.+++|+|++++||||||||++|++|++..+... ..+++
T Consensus 26 ~~~~~~~-l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~------~~~~~ 98 (401)
T PTZ00424 26 IVDSFDA-LKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD------LNACQ 98 (401)
T ss_pred ccCCHhh-CCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC------CCCce
Confidence 3567887 7899999999999999999999999999999999999999999999999999999776321 34678
Q ss_pred EEEEecCHHHHHHHHHHHHhcc-CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcc
Q psy7557 673 VLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDE 751 (936)
Q Consensus 673 ~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDE 751 (936)
+||++||++||.|+.+.+..++ ..++.+..++||.....+...+..+++|+|+||+++.+++.+....++++++|||||
T Consensus 99 ~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDE 178 (401)
T PTZ00424 99 ALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDE 178 (401)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEec
Confidence 9999999999999999998874 456778888999888888888888899999999999999988888899999999999
Q ss_pred cchhccCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCc-chhHHH
Q psy7557 752 ADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDE-DEKKDW 830 (936)
Q Consensus 752 ah~l~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~k~~~ 830 (936)
||++++.+|...+..+...++++.|++++|||+|.....+...++.+|..+.+...... ...+.+.+..+.. ..+...
T Consensus 179 ah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 257 (401)
T PTZ00424 179 ADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELT-LEGIRQFYVAVEKEEWKFDT 257 (401)
T ss_pred HHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcc-cCCceEEEEecChHHHHHHH
Confidence 99999999999999999999999999999999999999999999989887766554322 2334555544443 345556
Q ss_pred HHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCC
Q psy7557 831 LMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPD 910 (936)
Q Consensus 831 l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~ 910 (936)
+..++... ...++||||+++..++.++..|...+..+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|+
T Consensus 258 l~~~~~~~--~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~ 335 (401)
T PTZ00424 258 LCDLYETL--TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQ 335 (401)
T ss_pred HHHHHHhc--CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCccc
Confidence 66666543 3468999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 911 LTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 911 v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
+++||+||+|.+..+|+||+|||||.
T Consensus 336 v~~VI~~~~p~s~~~y~qr~GRagR~ 361 (401)
T PTZ00424 336 VSLVINYDLPASPENYIHRIGRSGRF 361 (401)
T ss_pred CCEEEEECCCCCHHHEeecccccccC
Confidence 99999999999999999999999994
No 67
>KOG0350|consensus
Probab=100.00 E-value=4.4e-52 Score=431.95 Aligned_cols=350 Identities=27% Similarity=0.429 Sum_probs=297.0
Q ss_pred HHHHHHhCCCCCCcHHHHHHHHHHhc---------CCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEc
Q psy7557 87 ILRQLENLSFTTPSPIQAQAWPILMS---------GHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMA 157 (936)
Q Consensus 87 l~~~l~~~g~~~~~~~Q~~ai~~~~~---------g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~ 157 (936)
+.+++.++++++..|+|.+.+|.++. ++|+.+.||||||||++|.||+++.+.... -+.-++|||+
T Consensus 148 ~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~-----v~~LRavViv 222 (620)
T KOG0350|consen 148 IDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRP-----VKRLRAVVIV 222 (620)
T ss_pred HHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCC-----ccceEEEEEe
Confidence 55678999999999999999998852 589999999999999999999998775432 2346899999
Q ss_pred CcHHHHHHHHHHHHhcc-CCCCEEEEEeCCccchHHHHHhhcC-C----cEEEeCCchhHHHHHc-CCcCCCCceEEEEc
Q psy7557 158 PTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREG-C----HILIATPGRLNDFVSR-ASIDLKAVSFVVLD 230 (936)
Q Consensus 158 Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~-~----~Iiv~Tp~~l~~~l~~-~~~~~~~~~~lViD 230 (936)
||++|+.|+++.|.++. ..|+.|+.+.|..+..+...++.+. + ||+|+|||||.|++.. ..+++++++++|||
T Consensus 223 Ptr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVID 302 (620)
T KOG0350|consen 223 PTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVID 302 (620)
T ss_pred eHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEec
Confidence 99999999999999985 6789998899988888887777654 3 8999999999999985 68999999999999
Q ss_pred cchhhhcCCCHHHHHHHHhhcC----------------------------------CCCcEEEEEeccchHHHHHHHHhc
Q psy7557 231 EADRMLDLGFEPQINKTSIYIN----------------------------------PNRQTVMTSATWNKDVQRVAKKYM 276 (936)
Q Consensus 231 Eah~l~~~~~~~~~~~i~~~~~----------------------------------~~~q~~~~SAT~~~~~~~~~~~~~ 276 (936)
|||||++..|...+..++..+. +..+.+.+|||+......+...-+
T Consensus 303 EADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l 382 (620)
T KOG0350|consen 303 EADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTL 382 (620)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhc
Confidence 9999998777665554433321 112478899999887777777777
Q ss_pred CCCEEEEeCC---CCcccCCceEEEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhh----hcCCce
Q psy7557 277 VNPVKVNVGS---LDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLA----CQYRKS 349 (936)
Q Consensus 277 ~~~~~i~~~~---~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~----~~~~~~ 349 (936)
..|....+.. .....+..+.+..+.++...|...++.++... ...++|+|+++...+..++..|. ....++
T Consensus 383 ~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~--k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~ 460 (620)
T KOG0350|consen 383 HIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN--KLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKV 460 (620)
T ss_pred CCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh--hcceEEEEecchHHHHHHHHHHHHHhccccchh
Confidence 7774444432 33456667777888888888888888888764 57899999999999999998887 345666
Q ss_pred eeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEeccc
Q psy7557 350 CSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRK 429 (936)
Q Consensus 350 ~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~ 429 (936)
..+.|++++..|...++.|..|.++||||||+++||+|+.+|+.|||||+|.+..+|+||+|||||+|+.|.|+++++..
T Consensus 461 s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~ 540 (620)
T KOG0350|consen 461 SEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKH 540 (620)
T ss_pred hhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccc
Confidence 77999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHhHHHHHhh
Q psy7557 430 DWSHAHEIIPILEE 443 (936)
Q Consensus 430 ~~~~~~~l~~~l~~ 443 (936)
+..++.++++....
T Consensus 541 ~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 541 EKRLFSKLLKKTNL 554 (620)
T ss_pred cchHHHHHHHHhcc
Confidence 99998888876554
No 68
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=4.3e-51 Score=484.26 Aligned_cols=343 Identities=19% Similarity=0.266 Sum_probs=271.1
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHH
Q psy7557 83 HYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTREL 162 (936)
Q Consensus 83 ~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~L 162 (936)
+++.+.++|.+.||++|+++|.+|||.+++|+|+++++|||||||+||++|++..+.. ..++++|||+|||||
T Consensus 21 l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~-------~~~~~aL~l~PtraL 93 (742)
T TIGR03817 21 AHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALAD-------DPRATALYLAPTKAL 93 (742)
T ss_pred CCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhh-------CCCcEEEEEcChHHH
Confidence 6789999999999999999999999999999999999999999999999999988753 236799999999999
Q ss_pred HHHHHHHHHhccCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcC----CcCCCCceEEEEccchhhhcC
Q psy7557 163 ATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRA----SIDLKAVSFVVLDEADRMLDL 238 (936)
Q Consensus 163 a~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~----~~~~~~~~~lViDEah~l~~~ 238 (936)
|.|+.+.++++...++++..+.|+.+ ..+...+..+++|+|+||++|...+... ...++++++|||||||.|.+
T Consensus 94 a~q~~~~l~~l~~~~i~v~~~~Gdt~-~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g- 171 (742)
T TIGR03817 94 AADQLRAVRELTLRGVRPATYDGDTP-TEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG- 171 (742)
T ss_pred HHHHHHHHHHhccCCeEEEEEeCCCC-HHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-
Confidence 99999999998755778776666655 5555667778999999999986543221 12378999999999999976
Q ss_pred CCHHHHHHHHh-------hcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeC--------
Q psy7557 239 GFEPQINKTSI-------YINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD-------- 303 (936)
Q Consensus 239 ~~~~~~~~i~~-------~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-------- 303 (936)
.|+..+..++. ..+.++|++++|||+++.. .++..++..|..+ +.... ..... .+......
T Consensus 172 ~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~-~~~~~l~g~~~~~-i~~~~-~~~~~-~~~~~~~p~~~~~~~~ 247 (742)
T TIGR03817 172 VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPA-AAASRLIGAPVVA-VTEDG-SPRGA-RTVALWEPPLTELTGE 247 (742)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHH-HHHHHHcCCCeEE-ECCCC-CCcCc-eEEEEecCCccccccc
Confidence 36666544433 3356789999999999765 4677778777654 32221 11111 11111111
Q ss_pred ---------chhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhc--------CCceeeecCCCCHHHHHHHHH
Q psy7557 304 ---------EDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQ--------YRKSCSLYGDLSQEDREIALE 366 (936)
Q Consensus 304 ---------~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~--------~~~~~~~h~~~~~~~R~~~~~ 366 (936)
..++...+..++. .+.++||||+|++.++.++..|... +.++..+||++++++|..+++
T Consensus 248 ~~~~~r~~~~~~~~~~l~~l~~----~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~ 323 (742)
T TIGR03817 248 NGAPVRRSASAEAADLLADLVA----EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELER 323 (742)
T ss_pred cccccccchHHHHHHHHHHHHH----CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHH
Confidence 1133344444443 3579999999999999999988764 567889999999999999999
Q ss_pred HhhcCCcEEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEeccc--ChhhHHhHHHHHh
Q psy7557 367 DITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRK--DWSHAHEIIPILE 442 (936)
Q Consensus 367 ~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~--~~~~~~~l~~~l~ 442 (936)
+|++|++++|||||++++|||+|++++|||||+|.++.+|+||+|||||.|+.|.++++.+.+ |...+....++++
T Consensus 324 ~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~ 401 (742)
T TIGR03817 324 ALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFD 401 (742)
T ss_pred HHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999998744 4333444433333
No 69
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=7e-50 Score=466.29 Aligned_cols=336 Identities=21% Similarity=0.270 Sum_probs=263.7
Q ss_pred hcCCHHHHHHHHh-CCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCc
Q psy7557 81 FQHYPEILRQLEN-LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPT 159 (936)
Q Consensus 81 ~~~~~~l~~~l~~-~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt 159 (936)
|+....+...+++ +||..++|+|.++|+.++.|+|+++++|||+|||+||++|++.. ++.+|||+|+
T Consensus 442 fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------------~GiTLVISPL 509 (1195)
T PLN03137 442 FPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------------PGITLVISPL 509 (1195)
T ss_pred CCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------------CCcEEEEeCH
Confidence 3344555555555 79999999999999999999999999999999999999999842 3579999999
Q ss_pred HHHHHHHHHHHHhccCCCCEEEEEeCCccchHHHHHhh------cCCcEEEeCCchhHH--HHHcC---CcCCCCceEEE
Q psy7557 160 RELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIR------EGCHILIATPGRLND--FVSRA---SIDLKAVSFVV 228 (936)
Q Consensus 160 ~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~------~~~~Iiv~Tp~~l~~--~l~~~---~~~~~~~~~lV 228 (936)
++|+.++...+.. .++++..+.++....++...+. ..++|+|+|||+|.. .+.+. ......+.+||
T Consensus 510 iSLmqDQV~~L~~---~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIV 586 (1195)
T PLN03137 510 VSLIQDQIMNLLQ---ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFV 586 (1195)
T ss_pred HHHHHHHHHHHHh---CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceec
Confidence 9998765555444 5789999999988766644333 348999999999852 22221 11234589999
Q ss_pred EccchhhhcCC--CHHHHHHH--HhhcCCCCcEEEEEeccchHHHHHHHHhcC--CCEEEEeCCCCcccCCceEEEEEEe
Q psy7557 229 LDEADRMLDLG--FEPQINKT--SIYINPNRQTVMTSATWNKDVQRVAKKYMV--NPVKVNVGSLDLAATHTVTQKIIIL 302 (936)
Q Consensus 229 iDEah~l~~~~--~~~~~~~i--~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~ 302 (936)
|||||++++|| |++.+..+ +....++.|+++||||+++.+...+...+. ++..+.. ... ..++. +.++
T Consensus 587 IDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~-Sf~---RpNL~--y~Vv 660 (1195)
T PLN03137 587 IDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQ-SFN---RPNLW--YSVV 660 (1195)
T ss_pred cCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeec-ccC---ccceE--EEEe
Confidence 99999999998 88888764 333446789999999999988875554432 3333221 111 12222 2222
Q ss_pred Cchh-hHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecc
Q psy7557 303 DEDE-KKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDV 381 (936)
Q Consensus 303 ~~~~-k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~ 381 (936)
.... ....+..++... ......||||++++.++.+++.|...|+.+..|||+|++.+|..+++.|..|+++|||||++
T Consensus 661 ~k~kk~le~L~~~I~~~-~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdA 739 (1195)
T PLN03137 661 PKTKKCLEDIDKFIKEN-HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVA 739 (1195)
T ss_pred ccchhHHHHHHHHHHhc-ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEech
Confidence 3222 234455555433 23567899999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHH
Q psy7557 382 ASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEII 438 (936)
Q Consensus 382 ~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~ 438 (936)
++||||+|+|++|||||+|.|+++|+||+|||||+|..|.|++|++..|......++
T Consensus 740 FGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI 796 (1195)
T PLN03137 740 FGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMI 796 (1195)
T ss_pred hhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988876655555
No 70
>KOG0327|consensus
Probab=100.00 E-value=1.1e-50 Score=412.41 Aligned_cols=335 Identities=33% Similarity=0.550 Sum_probs=304.6
Q ss_pred CCCCcCChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCC
Q psy7557 590 IPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERA 669 (936)
Q Consensus 590 ~p~~~~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~ 669 (936)
+-.-+.+|++ ++|.+.+++.++..||.+|+.||+.||..+..|.|+++.+++|+|||.+|.++++..+.. ...
T Consensus 21 ~~evvdsfdd-m~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~------~~k 93 (397)
T KOG0327|consen 21 WNEVVDSFDD-MNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM------SVK 93 (397)
T ss_pred HHHHhhhhhh-cCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc------chH
Confidence 3445678988 799999999999999999999999999999999999999999999999999999977632 134
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhcc-CCCCEEEEEECCccchHHHHHHh-cCceEEEeCchHHHHHHHcCCCCCCCceEE
Q psy7557 670 GPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIR-EGCHILIATPGRLNDFVSRASIDLKAVSFV 747 (936)
Q Consensus 670 ~~~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~-~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~l 747 (936)
...|++++|||+||.|+.+....++ ..+.++..+.||.....+...++ .+++|+|+||+++.+++....+..+.++++
T Consensus 94 e~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmf 173 (397)
T KOG0327|consen 94 ETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMF 173 (397)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEE
Confidence 5689999999999999998888875 45778888889888775555444 458999999999999999988888899999
Q ss_pred EEcccchhccCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchh
Q psy7557 748 VLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEK 827 (936)
Q Consensus 748 ViDEah~l~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k 827 (936)
|+||||.|+..||..++..++..++++.|++++|||+|.++..+.+.++.+|+.+.+...+.. ...++|.+..+...+|
T Consensus 174 vlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~lt-l~gikq~~i~v~k~~k 252 (397)
T KOG0327|consen 174 VLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELT-LEGIKQFYINVEKEEK 252 (397)
T ss_pred eecchHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhh-hhheeeeeeecccccc
Confidence 999999999999999999999999999999999999999999999999999999999887754 4557777777777779
Q ss_pred HHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCC
Q psy7557 828 KDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLD 907 (936)
Q Consensus 828 ~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gid 907 (936)
...|+.+... ....+||||+++.+..+...|...++.+.++||+|.+.+|..++..|++|..+|||.|+.++||+|
T Consensus 253 ~~~l~dl~~~----~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argid 328 (397)
T KOG0327|consen 253 LDTLCDLYRR----VTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGID 328 (397)
T ss_pred ccHHHHHHHh----hhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccc
Confidence 9999998883 367899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 908 VPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 908 ip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
+-+++.|||||+|....+|+||+||+||+
T Consensus 329 v~~~slvinydlP~~~~~yihR~gr~gr~ 357 (397)
T KOG0327|consen 329 VQQVSLVVNYDLPARKENYIHRIGRAGRF 357 (397)
T ss_pred hhhcceeeeeccccchhhhhhhccccccc
Confidence 99999999999999999999999999996
No 71
>KOG4284|consensus
Probab=100.00 E-value=5.6e-50 Score=426.12 Aligned_cols=336 Identities=29% Similarity=0.470 Sum_probs=302.5
Q ss_pred CCCCcCChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCC
Q psy7557 590 IPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERA 669 (936)
Q Consensus 590 ~p~~~~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~ 669 (936)
.|.....|++ +.+..+++..|+..+|..||++|..|||.++.+.|+|++|.+|+|||++|.+.++..+.. +..
T Consensus 20 ~~~~~~~fe~-l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~------~~~ 92 (980)
T KOG4284|consen 20 QSNCTPGFEQ-LALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS------RSS 92 (980)
T ss_pred ccCCCCCHHH-HHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc------ccC
Confidence 4555667888 568899999999999999999999999999999999999999999999999888876643 245
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhccC--CCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEE
Q psy7557 670 GPSVLVMAPTRELATQIEREVNKIDY--KGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFV 747 (936)
Q Consensus 670 ~~~~lil~Pt~~La~Q~~~~~~~~~~--~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~l 747 (936)
.+.++|++||||+|.|+.+.+.+++. .|.++....||.........++. ++|+||||||+..++..+.++.++++++
T Consensus 93 ~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n~s~vrlf 171 (980)
T KOG4284|consen 93 HIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMNMSHVRLF 171 (980)
T ss_pred cceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCCccceeEE
Confidence 78999999999999999999999864 79999999999998887777755 8999999999999999999999999999
Q ss_pred EEcccchhcc-CCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcc-
Q psy7557 748 VLDEADRMLD-LGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDED- 825 (936)
Q Consensus 748 ViDEah~l~~-~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~- 825 (936)
|+||||.+++ ..|..++..|...+|..+|+++||||.|.++.+++..++++|..+..+..+... ..++|++......
T Consensus 172 VLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L-~GikQyv~~~~s~n 250 (980)
T KOG4284|consen 172 VLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQL-FGIKQYVVAKCSPN 250 (980)
T ss_pred EeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCcee-echhheeeeccCCc
Confidence 9999999998 569999999999999999999999999999999999999999999887766433 4466665544432
Q ss_pred -------hhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEe
Q psy7557 826 -------EKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVA 898 (936)
Q Consensus 826 -------~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVa 898 (936)
.|...|-.++... +-...||||+....|+-++..|...|+++.++.|.|+|.+|..+++.++.-.++|||+
T Consensus 251 nsveemrlklq~L~~vf~~i--py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVs 328 (980)
T KOG4284|consen 251 NSVEEMRLKLQKLTHVFKSI--PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVS 328 (980)
T ss_pred chHHHHHHHHHHHHHHHhhC--chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEe
Confidence 3666777777776 4467899999999999999999999999999999999999999999999999999999
Q ss_pred cccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 899 TDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 899 T~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
||..+||||-+++++|||.|+|.+.++|.||||||||+
T Consensus 329 TDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRF 366 (980)
T KOG4284|consen 329 TDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRF 366 (980)
T ss_pred cchhhccCCccccceEEecCCCcchHHHHHHhhhcccc
Confidence 99999999999999999999999999999999999997
No 72
>KOG0337|consensus
Probab=100.00 E-value=4.8e-50 Score=408.52 Aligned_cols=333 Identities=34% Similarity=0.541 Sum_probs=306.9
Q ss_pred ChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEE
Q psy7557 596 SFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLV 675 (936)
Q Consensus 596 ~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~li 675 (936)
+|.. ++|+..+++++.+.||+.|||+|++.+|.++.|+|++..|.||||||.||++|+++.+.... ..|-++++
T Consensus 22 ~fqs-mgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-----~~g~Rali 95 (529)
T KOG0337|consen 22 GFQS-MGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-----QTGLRALI 95 (529)
T ss_pred Cccc-cCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-----ccccceee
Confidence 4544 78999999999999999999999999999999999999999999999999999999886432 45789999
Q ss_pred EecCHHHHHHHHHHHHhcc-CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccch
Q psy7557 676 MAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADR 754 (936)
Q Consensus 676 l~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~ 754 (936)
++|||+||.|..+.++.++ ..+++.++++||....+++..+..++|||+|||+++..+.-...+.++.+.|||+||+|+
T Consensus 96 lsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadr 175 (529)
T KOG0337|consen 96 LSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADR 175 (529)
T ss_pred ccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhH
Confidence 9999999999999999986 568899999999999999999999999999999999888777778899999999999999
Q ss_pred hccCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHH
Q psy7557 755 MLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEF 834 (936)
Q Consensus 755 l~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 834 (936)
++++||.+++..++..++.++|+++||||+|..+-++++..+.+|+.+.+... .......+..+..+...+|...|..+
T Consensus 176 lfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldve-tkise~lk~~f~~~~~a~K~aaLl~i 254 (529)
T KOG0337|consen 176 LFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVE-TKISELLKVRFFRVRKAEKEAALLSI 254 (529)
T ss_pred HHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehh-hhcchhhhhheeeeccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998885443 24555667778888999999999998
Q ss_pred HHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEE
Q psy7557 835 FDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHV 914 (936)
Q Consensus 835 l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~V 914 (936)
+.... ..++++|||.|+.+++.+...|...++.+..++|.|++..|...+.+|+.++..+||.||+++||+|+|-.+.|
T Consensus 255 l~~~~-~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnv 333 (529)
T KOG0337|consen 255 LGGRI-KDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNV 333 (529)
T ss_pred Hhccc-cccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCcccccc
Confidence 88773 35689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCChhhhHhhhhhccCC
Q psy7557 915 INYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 915 I~~d~p~s~~~yiqr~GRaGR~ 936 (936)
||||+|.+..-|+||+||+.|+
T Consensus 334 inyd~p~~~klFvhRVgr~ara 355 (529)
T KOG0337|consen 334 INYDFPPDDKLFVHRVGRVARA 355 (529)
T ss_pred ccccCCCCCceEEEEecchhhc
Confidence 9999999999999999998774
No 73
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=2.3e-48 Score=460.99 Aligned_cols=317 Identities=19% Similarity=0.252 Sum_probs=253.5
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHH
Q psy7557 603 HYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTREL 682 (936)
Q Consensus 603 l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~L 682 (936)
+++.+.+.|++.||+.|+|+|.+|||.+++|+|+++.+|||||||+||++|++..+.. .+++++|||+|||||
T Consensus 21 l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~-------~~~~~aL~l~PtraL 93 (742)
T TIGR03817 21 AHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALAD-------DPRATALYLAPTKAL 93 (742)
T ss_pred CCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhh-------CCCcEEEEEcChHHH
Confidence 6788999999999999999999999999999999999999999999999999988753 246799999999999
Q ss_pred HHHHHHHHHhccCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHc----CCCCCCCceEEEEcccchhccC
Q psy7557 683 ATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSR----ASIDLKAVSFVVLDEADRMLDL 758 (936)
Q Consensus 683 a~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~----~~~~~~~i~~lViDEah~l~~~ 758 (936)
|.|+.+.++.+...++++..+.|+.. ..+...+..+++|+|+||+++...+.. +...++++++|||||||.|.+
T Consensus 94 a~q~~~~l~~l~~~~i~v~~~~Gdt~-~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g- 171 (742)
T TIGR03817 94 AADQLRAVRELTLRGVRPATYDGDTP-TEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG- 171 (742)
T ss_pred HHHHHHHHHHhccCCeEEEEEeCCCC-HHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-
Confidence 99999999998755777766666554 555567778899999999998753322 223478999999999999876
Q ss_pred CCHHHHHHHhhh-------cCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcC--------
Q psy7557 759 GFEPQINKTSIY-------INPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD-------- 823 (936)
Q Consensus 759 ~~~~~~~~i~~~-------~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-------- 823 (936)
.|...+..++.. .+.++|++++|||++... .++.+++..|..+. .... ...... +......
T Consensus 172 ~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~-~~~~~l~g~~~~~i-~~~~-~~~~~~-~~~~~~p~~~~~~~~ 247 (742)
T TIGR03817 172 VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPA-AAASRLIGAPVVAV-TEDG-SPRGAR-TVALWEPPLTELTGE 247 (742)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHH-HHHHHHcCCCeEEE-CCCC-CCcCce-EEEEecCCccccccc
Confidence 366554444333 356789999999998765 46777777776543 2221 111111 1111111
Q ss_pred ---------cchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhc--------CCceEEEeCCCCHHHHHHHHH
Q psy7557 824 ---------EDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQ--------YRKSCSLYGDLSQEDREIALE 886 (936)
Q Consensus 824 ---------~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~--------~~~~~~~h~~l~~~~R~~~~~ 886 (936)
...+...+..++. ...++||||+|++.|+.++..|... +..+..+||++++++|..+++
T Consensus 248 ~~~~~r~~~~~~~~~~l~~l~~----~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~ 323 (742)
T TIGR03817 248 NGAPVRRSASAEAADLLADLVA----EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELER 323 (742)
T ss_pred cccccccchHHHHHHHHHHHHH----CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHH
Confidence 1123344444443 3578999999999999999988764 567889999999999999999
Q ss_pred HhhcCCCcEEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 887 DITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 887 ~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
.|++|++++||||+++++|||+|++++||+||+|.+..+|+||+|||||+
T Consensus 324 ~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~ 373 (742)
T TIGR03817 324 ALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRR 373 (742)
T ss_pred HHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCC
Confidence 99999999999999999999999999999999999999999999999995
No 74
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.6e-48 Score=444.10 Aligned_cols=326 Identities=19% Similarity=0.302 Sum_probs=257.9
Q ss_pred hCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHh
Q psy7557 93 NLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK 172 (936)
Q Consensus 93 ~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 172 (936)
.+||..|+|+|.+||+.+++|+|+++++|||||||++|++|++. .+..+||++||++|+.|+.+.++.
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~------------~~~~~lVi~P~~~L~~dq~~~l~~ 73 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC------------SDGITLVISPLISLMEDQVLQLKA 73 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH------------cCCcEEEEecHHHHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999999884 134689999999999998888876
Q ss_pred ccCCCCEEEEEeCCccchHH---HHHhhcC-CcEEEeCCchhHHHH-HcCCc-CCCCceEEEEccchhhhcCC--CHHHH
Q psy7557 173 IDYKGLKAVCVYGGKEIEPQ---LEKIREG-CHILIATPGRLNDFV-SRASI-DLKAVSFVVLDEADRMLDLG--FEPQI 244 (936)
Q Consensus 173 ~~~~~~~~~~~~gg~~~~~~---~~~~~~~-~~Iiv~Tp~~l~~~l-~~~~~-~~~~~~~lViDEah~l~~~~--~~~~~ 244 (936)
+ ++.+..+.++...... ...+..+ ++|+++||+++.... ....+ ...++++|||||||++++|| |++.+
T Consensus 74 ~---gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~ 150 (470)
T TIGR00614 74 S---GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDY 150 (470)
T ss_pred c---CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHH
Confidence 4 6777777776554432 2233333 899999999975322 11112 46789999999999999988 77777
Q ss_pred HHHHh--hcCCCCcEEEEEeccchHHHHHHHHhc--CCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhccC
Q psy7557 245 NKTSI--YINPNRQTVMTSATWNKDVQRVAKKYM--VNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDE 320 (936)
Q Consensus 245 ~~i~~--~~~~~~q~~~~SAT~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~ 320 (936)
..+.. ...++.+++++|||+++.+.......+ .+|..+..... ..++...+.. ........+..++... .
T Consensus 151 ~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~----r~nl~~~v~~-~~~~~~~~l~~~l~~~-~ 224 (470)
T TIGR00614 151 KALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFD----RPNLYYEVRR-KTPKILEDLLRFIRKE-F 224 (470)
T ss_pred HHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCC----CCCcEEEEEe-CCccHHHHHHHHHHHh-c
Confidence 66532 233678999999999988766554443 34544332221 1222222211 1223445566666532 3
Q ss_pred CCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEecCC
Q psy7557 321 ERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFP 400 (936)
Q Consensus 321 ~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p 400 (936)
.+..+||||++++.++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++||||++|
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P 304 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLP 304 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCC
Confidence 45667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCCcccCCCceeEEEEecccChhhHHhHHH
Q psy7557 401 SHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIP 439 (936)
Q Consensus 401 ~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~ 439 (936)
.|+++|+||+|||||.|..|.|++|+++.|....+.++.
T Consensus 305 ~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 305 KSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred CCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 999999999999999999999999999999877666654
No 75
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=6e-47 Score=451.61 Aligned_cols=385 Identities=18% Similarity=0.195 Sum_probs=309.1
Q ss_pred CHHHHHHHHh-CCCCCCcHHHHHHHHHHhcC------CcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEE
Q psy7557 84 YPEILRQLEN-LSFTTPSPIQAQAWPILMSG------HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVM 156 (936)
Q Consensus 84 ~~~l~~~l~~-~g~~~~~~~Q~~ai~~~~~g------~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil 156 (936)
+..+.+.+.+ .+| +|||+|.+||+.++++ +|.++|||||||||.+|++|++..+. .+++++|+
T Consensus 437 ~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~---------~g~qvlvL 506 (926)
T TIGR00580 437 DLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL---------DGKQVAVL 506 (926)
T ss_pred CHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH---------hCCeEEEE
Confidence 3445555544 688 6999999999999875 79999999999999999999987663 35789999
Q ss_pred cCcHHHHHHHHHHHHh-ccCCCCEEEEEeCCccchH---HHHHhhcC-CcEEEeCCchhHHHHHcCCcCCCCceEEEEcc
Q psy7557 157 APTRELATQIEREVNK-IDYKGLKAVCVYGGKEIEP---QLEKIREG-CHILIATPGRLNDFVSRASIDLKAVSFVVLDE 231 (936)
Q Consensus 157 ~Pt~~La~Q~~~~~~~-~~~~~~~~~~~~gg~~~~~---~~~~~~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDE 231 (936)
+||++||.|+++.+++ +...++++..++|+....+ ....+..| ++||||||.. + .+.+.+++++++||||
T Consensus 507 vPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l-~~~v~f~~L~llVIDE 581 (926)
T TIGR00580 507 VPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----L-QKDVKFKDLGLLIIDE 581 (926)
T ss_pred eCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----h-hCCCCcccCCEEEeec
Confidence 9999999999999998 4566888888888765433 34445554 8999999942 2 3456789999999999
Q ss_pred chhhhcCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHH
Q psy7557 232 ADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWL 311 (936)
Q Consensus 232 ah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 311 (936)
+|++ .......+..+++++|+++||||+++....++.....++..+...+.. ...+...+.......-...+
T Consensus 582 ahrf-----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~---R~~V~t~v~~~~~~~i~~~i 653 (926)
T TIGR00580 582 EQRF-----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED---RLPVRTFVMEYDPELVREAI 653 (926)
T ss_pred cccc-----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC---ccceEEEEEecCHHHHHHHH
Confidence 9994 333445556677889999999998888777777777788777655432 12344433322221111222
Q ss_pred HHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhc--CCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCC
Q psy7557 312 MEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQ--YRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVP 389 (936)
Q Consensus 312 ~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip 389 (936)
.. .. ..+++++|||+++..++.+++.|... +.++..+||+|++.+|+.++++|++|+++|||||+++++|||+|
T Consensus 654 ~~---el-~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp 729 (926)
T TIGR00580 654 RR---EL-LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIP 729 (926)
T ss_pred HH---HH-HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccc
Confidence 22 22 34689999999999999999999875 67899999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCC-CccccccCCCCcccCCCceeEEEEecccC--hhhHHhHHHHHhhcC--CccchhhhhccccceeEee
Q psy7557 390 DLTHVINYDFPS-HIEEYVHRVGRTGRAGKSGESITLMTRKD--WSHAHEIIPILEEGG--HESYMIWRRDSRIALHVIL 464 (936)
Q Consensus 390 ~v~~VI~~d~p~-s~~~y~qr~GRagR~g~~g~~~~~~~~~~--~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~ 464 (936)
++++||++++|. +..+|+||+||+||.|+.|.|++++.+.+ .+...+.++.+++.. ...+.++.+|.++++.+.+
T Consensus 730 ~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~~~~~g~gf~ia~~Dl~~Rg~G~~ 809 (926)
T TIGR00580 730 NANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQEFSELGAGFKIALHDLEIRGAGNL 809 (926)
T ss_pred cCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHHhhcchhhHHHHHHHHHhcCCcCC
Confidence 999999999976 67899999999999999999999997654 356667777777664 2588999999999999999
Q ss_pred cCCceeeecccCCCcchhhhcccchhhhhcc
Q psy7557 465 EGGEEVVEEEEGGEDGMEILVGVDLEVVMEG 495 (936)
Q Consensus 465 ~~~~~~~~~~e~~~~~~~~~~~~~l~~~~~~ 495 (936)
.|.+|++.....+.+.+..++..+++.+..+
T Consensus 810 lG~~QsG~~~~~~~~~~~~~l~~a~~~~~~~ 840 (926)
T TIGR00580 810 LGEEQSGHIESIGFDLYMELLEEAIEELKGG 840 (926)
T ss_pred CCCcccCchhhccHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999988888776543
No 76
>KOG0344|consensus
Probab=100.00 E-value=3.4e-48 Score=414.23 Aligned_cols=347 Identities=31% Similarity=0.452 Sum_probs=294.3
Q ss_pred CCCCCCCCcCChHHh---hcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccC
Q psy7557 586 PDFQIPNPVTSFKQA---FQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQT 662 (936)
Q Consensus 586 ~~~~~p~~~~~f~~~---~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~ 662 (936)
.+..+|.|+.+|.++ +...+.+++.+...||..|+|+|.+|+|.++.++|+++|||||||||++|.+|++.++....
T Consensus 123 ~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~ 202 (593)
T KOG0344|consen 123 DGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLS 202 (593)
T ss_pred cCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhh
Confidence 355789999999863 55678899999999999999999999999999999999999999999999999998886532
Q ss_pred CCCccCCCCEEEEEecCHHHHHHHHHHHHhccC---CCCEEEEEECCcc-chHHHHHHhcCceEEEeCchHHHHHHHcCC
Q psy7557 663 TPISERAGPSVLVMAPTRELATQIEREVNKIDY---KGLKAVCVYGGKE-LEPQLEKIREGCHILIATPGRLNDFVSRAS 738 (936)
Q Consensus 663 ~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~---~~~~~~~~~gg~~-~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~ 738 (936)
. .....|-+++|+.|||+||.|++.++.++.. .+..+........ ..+........++|+|+||-++..++..+.
T Consensus 203 ~-~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~ 281 (593)
T KOG0344|consen 203 Q-EKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGK 281 (593)
T ss_pred c-ccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCC
Confidence 2 2234577999999999999999999999862 2333333322211 112222233347999999999999998875
Q ss_pred --CCCCCceEEEEcccchhccC-CCHHHHHHHhhhc-CCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCc
Q psy7557 739 --IDLKAVSFVVLDEADRMLDL-GFEPQINKTSIYI-NPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHT 814 (936)
Q Consensus 739 --~~~~~i~~lViDEah~l~~~-~~~~~~~~i~~~~-~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 814 (936)
+.+..+.++|+||+|++++. .|..++..|...+ .++..+-+||||++..+++++.....++..+.++..+.. ...
T Consensus 282 ~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa-~~~ 360 (593)
T KOG0344|consen 282 LNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSA-NET 360 (593)
T ss_pred ccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhH-hhh
Confidence 67899999999999999998 8999999987766 477888899999999999999999999999999887654 445
Q ss_pred eEEEEEEc-CcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHH-HhcCCceEEEeCCCCHHHHHHHHHHhhcCC
Q psy7557 815 VTQKIIIL-DEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDL-ACQYRKSCSLYGDLSQEDREIALEDITSGY 892 (936)
Q Consensus 815 ~~~~~~~~-~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L-~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~ 892 (936)
+.|...+| .+..|.-.+.+++... -.+|++||+.+.+.|.+|+..| ...++.+..+||+.++.+|+++++.|+.|+
T Consensus 361 V~QelvF~gse~~K~lA~rq~v~~g--~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~ 438 (593)
T KOG0344|consen 361 VDQELVFCGSEKGKLLALRQLVASG--FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGK 438 (593)
T ss_pred hhhhheeeecchhHHHHHHHHHhcc--CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccC
Confidence 66665555 4566777777777765 5689999999999999999999 788999999999999999999999999999
Q ss_pred CcEEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 893 ARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 893 ~~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
++|||||++++||+|+.++++|||||+|.+..+|+||+||+||+
T Consensus 439 IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRa 482 (593)
T KOG0344|consen 439 IWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRA 482 (593)
T ss_pred eeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCC
Confidence 99999999999999999999999999999999999999999996
No 77
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=6.1e-47 Score=443.46 Aligned_cols=329 Identities=21% Similarity=0.333 Sum_probs=260.1
Q ss_pred HHHHHHh-CCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHH
Q psy7557 87 ILRQLEN-LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQ 165 (936)
Q Consensus 87 l~~~l~~-~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q 165 (936)
..+.|++ .||.+|+|+|.++|+.+++|+|+++++|||+|||++|++|++.. +..+||++|+++|+.|
T Consensus 13 ~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------------~g~tlVisPl~sL~~d 80 (607)
T PRK11057 13 AKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------------DGLTLVVSPLISLMKD 80 (607)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------------CCCEEEEecHHHHHHH
Confidence 3444544 79999999999999999999999999999999999999999842 3468999999999999
Q ss_pred HHHHHHhccCCCCEEEEEeCCccchHHH---HHhhcC-CcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCC--
Q psy7557 166 IEREVNKIDYKGLKAVCVYGGKEIEPQL---EKIREG-CHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLG-- 239 (936)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~~~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~-- 239 (936)
+.+.++.+ ++.+..+.++....... ..+..+ .+++++||+++........+...+++++||||||++.+||
T Consensus 81 qv~~l~~~---gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~ 157 (607)
T PRK11057 81 QVDQLLAN---GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHD 157 (607)
T ss_pred HHHHHHHc---CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCc
Confidence 98888874 67777777765544332 233333 7899999999863222223345578999999999999987
Q ss_pred CHHHHHHHHhh--cCCCCcEEEEEeccchHHHHHHHHh--cCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHH
Q psy7557 240 FEPQINKTSIY--INPNRQTVMTSATWNKDVQRVAKKY--MVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFF 315 (936)
Q Consensus 240 ~~~~~~~i~~~--~~~~~q~~~~SAT~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l 315 (936)
|++.+..+... ..++.+++++|||+++......... +.+|.... .... ..++. +..+....+...+...+
T Consensus 158 fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~-~~~~---r~nl~--~~v~~~~~~~~~l~~~l 231 (607)
T PRK11057 158 FRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-SSFD---RPNIR--YTLVEKFKPLDQLMRYV 231 (607)
T ss_pred ccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEE-CCCC---CCcce--eeeeeccchHHHHHHHH
Confidence 77776655322 2357899999999998876544333 34554333 2211 11221 22233334455566666
Q ss_pred HhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEE
Q psy7557 316 DNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVI 395 (936)
Q Consensus 316 ~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI 395 (936)
... .+.++||||+|++.|+.+++.|...++.+..+||+|++++|..+++.|+.|+++|||||+++++|||+|+|++||
T Consensus 232 ~~~--~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI 309 (607)
T PRK11057 232 QEQ--RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVV 309 (607)
T ss_pred Hhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEE
Confidence 543 467899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHH
Q psy7557 396 NYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEII 438 (936)
Q Consensus 396 ~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~ 438 (936)
|||+|.|.++|+||+|||||.|..|.|++|+++.|....+.++
T Consensus 310 ~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred EeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999877655554
No 78
>KOG0350|consensus
Probab=100.00 E-value=1.1e-47 Score=399.30 Aligned_cols=325 Identities=27% Similarity=0.430 Sum_probs=272.5
Q ss_pred HHHHHHHHhCCCCCCcHHHHHHHHhhh---------cCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEE
Q psy7557 605 PEILRQLENLSFTTPSPIQAQAWPILM---------SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLV 675 (936)
Q Consensus 605 ~~~~~~l~~~g~~~p~~iQ~~ai~~~l---------~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~li 675 (936)
..+..++.+++++..+|+|..++|.++ .++|+.+.||||||||+||.||+++.+...+ -+.-++||
T Consensus 146 a~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~-----v~~LRavV 220 (620)
T KOG0350|consen 146 ATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRP-----VKRLRAVV 220 (620)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCC-----ccceEEEE
Confidence 345667999999999999999999986 2689999999999999999999998875432 23468999
Q ss_pred EecCHHHHHHHHHHHHhcc-CCCCEEEEEECCccchHHHHHHhcC-----ceEEEeCchHHHHHHHc-CCCCCCCceEEE
Q psy7557 676 MAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREG-----CHILIATPGRLNDFVSR-ASIDLKAVSFVV 748 (936)
Q Consensus 676 l~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~-----~~IiV~Tp~~l~~~l~~-~~~~~~~i~~lV 748 (936)
|+||++|+.|+++.|.++. ..|+.++.+.|..+..+...+|.+. .||+|+|||||.+++.+ ..+.+++++|+|
T Consensus 221 ivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLV 300 (620)
T KOG0350|consen 221 IVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLV 300 (620)
T ss_pred EeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEE
Confidence 9999999999999999985 6788888899988888888887664 38999999999999985 578899999999
Q ss_pred EcccchhccCCCHHHHHHHhhhcC----------------------------------CCceEEEEEecCChHHHHHHHH
Q psy7557 749 LDEADRMLDLGFEPQINKTSIYIN----------------------------------PNRQTVMTSATWNKDVQRVAKK 794 (936)
Q Consensus 749 iDEah~l~~~~~~~~~~~i~~~~~----------------------------------~~~q~v~~SAT~~~~~~~~~~~ 794 (936)
|||||+|++..|..++..+...+. +..+.+.+|||++.+...+...
T Consensus 301 IDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l 380 (620)
T KOG0350|consen 301 IDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDL 380 (620)
T ss_pred echHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhh
Confidence 999999998776665554433321 2235789999999888888877
Q ss_pred hcCCCeEEEeCC---CCcccCCceEEEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHH----hcCC
Q psy7557 795 YMVNPVKVNVGS---LDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLA----CQYR 867 (936)
Q Consensus 795 ~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~----~~~~ 867 (936)
-+..|....+.. ........+.+..+.+....+.-.++.++... +..++|+|+++...+..++..|. ....
T Consensus 381 ~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~--k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~ 458 (620)
T KOG0350|consen 381 TLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN--KLNRTLCFVNSVSSANRLAHVLKVEFCSDNF 458 (620)
T ss_pred hcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh--hcceEEEEecchHHHHHHHHHHHHHhccccc
Confidence 777885444432 22344555667777777778888888888775 56789999999999999998887 3345
Q ss_pred ceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 868 KSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 868 ~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
.+..+.|+++.+.|.+.++.|..|.++||||||+++||+|+.++++|||||+|.+..+|+||+||||||
T Consensus 459 ~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARA 527 (620)
T KOG0350|consen 459 KVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARA 527 (620)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccc
Confidence 667799999999999999999999999999999999999999999999999999999999999999996
No 79
>KOG0329|consensus
Probab=100.00 E-value=3.3e-48 Score=369.05 Aligned_cols=312 Identities=34% Similarity=0.553 Sum_probs=280.0
Q ss_pred cChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEE
Q psy7557 75 TSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVL 154 (936)
Q Consensus 75 ~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~l 154 (936)
+.|.+ |-+.|++++++-..||.+|+.+|.++||.+.-|.|++..|.+|-|||.+|.+..++.+-.. .....++
T Consensus 42 sgfrd-fllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv------~g~vsvl 114 (387)
T KOG0329|consen 42 SGFRD-FLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPV------DGQVSVL 114 (387)
T ss_pred cchhh-hhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCC------CCeEEEE
Confidence 34777 6799999999999999999999999999999999999999999999999999988776321 2356789
Q ss_pred EEcCcHHHHHHHHHHHHhcc--CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccc
Q psy7557 155 VMAPTRELATQIEREVNKID--YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEA 232 (936)
Q Consensus 155 il~Pt~~La~Q~~~~~~~~~--~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEa 232 (936)
++|.|||||-|+.++..+|. ..++++...+||...+.....+++.++|+|+||||++.+..++.+++++++.+|+|||
T Consensus 115 vmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEc 194 (387)
T KOG0329|consen 115 VMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDEC 194 (387)
T ss_pred EEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhH
Confidence 99999999999998888875 3589999999999999998888888999999999999999999999999999999999
Q ss_pred hhhhc-CCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHH
Q psy7557 233 DRMLD-LGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWL 311 (936)
Q Consensus 233 h~l~~-~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 311 (936)
|.|++ ...+..++.|....|...|+++||||++++++..+++|+.||..+.+.....-..+.+.|.++...+.+|...+
T Consensus 195 dkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl 274 (387)
T KOG0329|consen 195 DKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKL 274 (387)
T ss_pred HHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhh
Confidence 99876 45788999999999999999999999999999999999999999988876656677889999999999999999
Q ss_pred HHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCC
Q psy7557 312 MEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDL 391 (936)
Q Consensus 312 ~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v 391 (936)
.++++.+ ..++++||+.+... | + | ..+ ||||++++||+|+..+
T Consensus 275 ~dLLd~L--eFNQVvIFvKsv~R-------l--------------~----------f---~kr-~vat~lfgrgmdierv 317 (387)
T KOG0329|consen 275 NDLLDVL--EFNQVVIFVKSVQR-------L--------------S----------F---QKR-LVATDLFGRGMDIERV 317 (387)
T ss_pred hhhhhhh--hhcceeEeeehhhh-------h--------------h----------h---hhh-hHHhhhhccccCcccc
Confidence 9999886 57899999987654 0 0 2 223 8999999999999999
Q ss_pred cEEEEecCCCCccccccCCCCcccCCCceeEEEEecccC
Q psy7557 392 THVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430 (936)
Q Consensus 392 ~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~ 430 (936)
+.|+|||+|.+..+|+||+|||||.|..|.+++|++..+
T Consensus 318 Ni~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~ 356 (387)
T KOG0329|consen 318 NIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 356 (387)
T ss_pred eeeeccCCCCCchHHHHHhhhhhccccccceeehhcchh
Confidence 999999999999999999999999999999999998654
No 80
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=2.2e-46 Score=437.08 Aligned_cols=314 Identities=21% Similarity=0.253 Sum_probs=243.1
Q ss_pred hcCCHHHHHHHHh-CCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecC
Q psy7557 601 FQHYPEILRQLEN-LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPT 679 (936)
Q Consensus 601 ~~l~~~~~~~l~~-~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt 679 (936)
|++...+...+++ +||..|+|+|.++|+.++.|+|+++++|||+|||+||++|++. .++.+|||+|+
T Consensus 442 fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~------------~~GiTLVISPL 509 (1195)
T PLN03137 442 FPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALI------------CPGITLVISPL 509 (1195)
T ss_pred CCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHH------------cCCcEEEEeCH
Confidence 4445555555554 7999999999999999999999999999999999999999983 24579999999
Q ss_pred HHHHHHHHHHHHhccCCCCEEEEEECCccchHHHHHHh------cCceEEEeCchHHHH--HHHcC---CCCCCCceEEE
Q psy7557 680 RELATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIR------EGCHILIATPGRLND--FVSRA---SIDLKAVSFVV 748 (936)
Q Consensus 680 ~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~------~~~~IiV~Tp~~l~~--~l~~~---~~~~~~i~~lV 748 (936)
++|+.++...+. ..++++..+.|+.....+...+. ..++|+++|||+|.. .+.+. ......+.+||
T Consensus 510 iSLmqDQV~~L~---~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIV 586 (1195)
T PLN03137 510 VSLIQDQIMNLL---QANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFV 586 (1195)
T ss_pred HHHHHHHHHHHH---hCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceec
Confidence 999874444443 35789999999988776655443 247999999999852 22211 11235589999
Q ss_pred EcccchhccCC--CHHHHHHH--hhhcCCCceEEEEEecCChHHHHHHHHhc--CCCeEEEeCCCCcccCCceEEEEEEc
Q psy7557 749 LDEADRMLDLG--FEPQINKT--SIYINPNRQTVMTSATWNKDVQRVAKKYM--VNPVKVNVGSLDLAATHTVTQKIIIL 822 (936)
Q Consensus 749 iDEah~l~~~~--~~~~~~~i--~~~~~~~~q~v~~SAT~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~ 822 (936)
|||||++++|| |++.+..+ +...-+..|+++||||++..+...+...+ .++..+.... . ..++. +.+.
T Consensus 587 IDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf-~---RpNL~--y~Vv 660 (1195)
T PLN03137 587 IDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSF-N---RPNLW--YSVV 660 (1195)
T ss_pred cCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeeccc-C---ccceE--EEEe
Confidence 99999999998 88887764 33334678999999999998887544433 2333322211 1 11222 2222
Q ss_pred Ccc-hhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEeccc
Q psy7557 823 DED-EKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDV 901 (936)
Q Consensus 823 ~~~-~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~ 901 (936)
... .....+..++... ......||||++++.|+.++..|...++.+..|||+|++++|..+++.|++|+++|||||++
T Consensus 661 ~k~kk~le~L~~~I~~~-~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdA 739 (1195)
T PLN03137 661 PKTKKCLEDIDKFIKEN-HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVA 739 (1195)
T ss_pred ccchhHHHHHHHHHHhc-ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEech
Confidence 222 2234455555433 23467899999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 902 ASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 902 ~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
++||||+|+|++||||++|.|+++|+||+|||||.
T Consensus 740 FGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRD 774 (1195)
T PLN03137 740 FGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRD 774 (1195)
T ss_pred hhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCC
Confidence 99999999999999999999999999999999994
No 81
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=5.1e-46 Score=453.17 Aligned_cols=381 Identities=17% Similarity=0.164 Sum_probs=306.1
Q ss_pred HHHHHhCCCCCCcHHHHHHHHHHhcC------CcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHH
Q psy7557 88 LRQLENLSFTTPSPIQAQAWPILMSG------HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRE 161 (936)
Q Consensus 88 ~~~l~~~g~~~~~~~Q~~ai~~~~~g------~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~ 161 (936)
.+....++| +||++|.+||+.++++ +|+++|||||||||.+|+.+++..+ ..+++++||+||++
T Consensus 591 ~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~---------~~g~qvlvLvPT~e 660 (1147)
T PRK10689 591 QLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV---------ENHKQVAVLVPTTL 660 (1147)
T ss_pred HHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHH---------HcCCeEEEEeCcHH
Confidence 344566888 7999999999999987 8999999999999999998887654 34789999999999
Q ss_pred HHHHHHHHHHh-ccCCCCEEEEEeCCccchHHHHH---hhc-CCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhh
Q psy7557 162 LATQIEREVNK-IDYKGLKAVCVYGGKEIEPQLEK---IRE-GCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRML 236 (936)
Q Consensus 162 La~Q~~~~~~~-~~~~~~~~~~~~gg~~~~~~~~~---~~~-~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~ 236 (936)
||.|+++.+++ +...++++..++|+.+..++... +.. .++|+|+||+.+ +..+.+++++++||||+|++
T Consensus 661 LA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL-----~~~v~~~~L~lLVIDEahrf- 734 (1147)
T PRK10689 661 LAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL-----QSDVKWKDLGLLIVDEEHRF- 734 (1147)
T ss_pred HHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH-----hCCCCHhhCCEEEEechhhc-
Confidence 99999999987 55567888888888776655433 333 489999999643 24456889999999999996
Q ss_pred cCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHH
Q psy7557 237 DLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFD 316 (936)
Q Consensus 237 ~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~ 316 (936)
|+. ....+..+++++|+++||||+++....++...+.++..+...... ...+.+.+........... ++.
T Consensus 735 --G~~--~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~---r~~v~~~~~~~~~~~~k~~---il~ 804 (1147)
T PRK10689 735 --GVR--HKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR---RLAVKTFVREYDSLVVREA---ILR 804 (1147)
T ss_pred --chh--HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC---CCCceEEEEecCcHHHHHH---HHH
Confidence 332 234456677899999999999888888888888999888765432 1233333332222111122 222
Q ss_pred hccCCCCcEEEEeCchHHHHHHHHHhhhc--CCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEE
Q psy7557 317 NMDEERDKVMVFMGRKASVSAMSSDLACQ--YRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHV 394 (936)
Q Consensus 317 ~~~~~~~~~iVF~~~~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~V 394 (936)
.. ..+++++||||++..++.+++.|... +.++..+||+|++.+|..++++|++|+++|||||+++++|||+|++++|
T Consensus 805 el-~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~V 883 (1147)
T PRK10689 805 EI-LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTI 883 (1147)
T ss_pred HH-hcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEE
Confidence 22 23579999999999999999999887 6789999999999999999999999999999999999999999999999
Q ss_pred EEecCC-CCccccccCCCCcccCCCceeEEEEecccC--hhhHHhHHHHHhhcCC--ccchhhhhccccceeEeecCCce
Q psy7557 395 INYDFP-SHIEEYVHRVGRTGRAGKSGESITLMTRKD--WSHAHEIIPILEEGGH--ESYMIWRRDSRIALHVILEGGEE 469 (936)
Q Consensus 395 I~~d~p-~s~~~y~qr~GRagR~g~~g~~~~~~~~~~--~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 469 (936)
|..+.. .+..+|+||+||+||.|+.|.|++++.... ...+.+.++.+++... ..+.++++|.++++.+.+.|.+|
T Consensus 884 Ii~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~~~~~~~~~~rl~~~~~~~~lg~gf~~a~~dl~~rg~g~~~g~~q 963 (1147)
T PRK10689 884 IIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQ 963 (1147)
T ss_pred EEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCCcccCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCccCCCCcc
Confidence 955443 255679999999999999999999886543 3456666666666542 57899999999999999999999
Q ss_pred eeecccCCCcchhhhcccchhhhhcc
Q psy7557 470 VVEEEEGGEDGMEILVGVDLEVVMEG 495 (936)
Q Consensus 470 ~~~~~e~~~~~~~~~~~~~l~~~~~~ 495 (936)
.++....+++.+..++..+++.+..+
T Consensus 964 ~g~~~~~g~~~y~~~l~~~~~~~~~~ 989 (1147)
T PRK10689 964 SGQMETIGFSLYMELLENAVDALKAG 989 (1147)
T ss_pred CCCccccCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999877544
No 82
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=8.9e-47 Score=453.91 Aligned_cols=335 Identities=22% Similarity=0.331 Sum_probs=262.3
Q ss_pred hHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHH-HhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEE
Q psy7557 77 FKQAFQHYPEILRQLENLSFTTPSPIQAQAWPI-LMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLV 155 (936)
Q Consensus 77 f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~-~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~li 155 (936)
|++ +++++.+++.+++.||.+|+|+|.+|++. +++|+|++++||||||||++|.+|++..+. .+.++||
T Consensus 3 ~~~-l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~---------~~~kal~ 72 (737)
T PRK02362 3 IAE-LPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA---------RGGKALY 72 (737)
T ss_pred hhh-cCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh---------cCCcEEE
Confidence 555 57999999999999999999999999998 678999999999999999999999998773 3568999
Q ss_pred EcCcHHHHHHHHHHHHhccCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhh
Q psy7557 156 MAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRM 235 (936)
Q Consensus 156 l~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l 235 (936)
++||++||.|+++.++++...++++..++|+...... ....++|+|+|||++..++.++...+++++++|+||+|.+
T Consensus 73 i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l 149 (737)
T PRK02362 73 IVPLRALASEKFEEFERFEELGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLI 149 (737)
T ss_pred EeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECcccc
Confidence 9999999999999999876668999999998765432 2245899999999998888776666889999999999999
Q ss_pred hcCCCHHHHHHHHhhc---CCCCcEEEEEeccchHHHHHHHHhcCC-------CEEEEeC--CCCcccCCceEEEEEEeC
Q psy7557 236 LDLGFEPQINKTSIYI---NPNRQTVMTSATWNKDVQRVAKKYMVN-------PVKVNVG--SLDLAATHTVTQKIIILD 303 (936)
Q Consensus 236 ~~~~~~~~~~~i~~~~---~~~~q~~~~SAT~~~~~~~~~~~~~~~-------~~~i~~~--~~~~~~~~~~~~~~~~~~ 303 (936)
.+.++++.++.++..+ .++.|++++|||+++ ..+++.++... |+.+... ......... .+......
T Consensus 150 ~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n-~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~-~~~~~~~~ 227 (737)
T PRK02362 150 DSANRGPTLEVTLAKLRRLNPDLQVVALSATIGN-ADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDD-SQREVEVP 227 (737)
T ss_pred CCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCC-HHHHHHHhCCCcccCCCCCCCCeeeEecCCeecccc-ccccCCCc
Confidence 9988888888776554 578999999999984 45555544322 1111110 000000000 00000000
Q ss_pred -chhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcC------------------------------------
Q psy7557 304 -EDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQY------------------------------------ 346 (936)
Q Consensus 304 -~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~------------------------------------ 346 (936)
.......+.+.+ ..++++||||++++.|+.++..|....
T Consensus 228 ~~~~~~~~~~~~~----~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~ 303 (737)
T PRK02362 228 SKDDTLNLVLDTL----EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVA 303 (737)
T ss_pred cchHHHHHHHHHH----HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHH
Confidence 111222222222 356899999999999999888876431
Q ss_pred CceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEE----ec-----CCCCccccccCCCCcccCC
Q psy7557 347 RKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVIN----YD-----FPSHIEEYVHRVGRTGRAG 417 (936)
Q Consensus 347 ~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~d-----~p~s~~~y~qr~GRagR~g 417 (936)
.++..|||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.+..+|+||+|||||+|
T Consensus 304 ~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g 383 (737)
T PRK02362 304 KGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPG 383 (737)
T ss_pred hCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCC
Confidence 36788999999999999999999999999999999999999999999997 77 5889999999999999998
Q ss_pred Cc--eeEEEEecccC
Q psy7557 418 KS--GESITLMTRKD 430 (936)
Q Consensus 418 ~~--g~~~~~~~~~~ 430 (936)
.. |.+++++...+
T Consensus 384 ~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 384 LDPYGEAVLLAKSYD 398 (737)
T ss_pred CCCCceEEEEecCch
Confidence 76 99999987643
No 83
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=8.8e-46 Score=448.20 Aligned_cols=357 Identities=18% Similarity=0.263 Sum_probs=260.3
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHH
Q psy7557 83 HYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTREL 162 (936)
Q Consensus 83 ~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~L 162 (936)
++|.+.+.+.+ +|..|||+|.+|||.+++|+|++++||||||||++|++|++.++...........++++||++||++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 55666666555 79999999999999999999999999999999999999999887643211111346789999999999
Q ss_pred HHHHHHHHHh-------c----c-C-CCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCc--CCCCceEE
Q psy7557 163 ATQIEREVNK-------I----D-Y-KGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASI--DLKAVSFV 227 (936)
Q Consensus 163 a~Q~~~~~~~-------~----~-~-~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~--~~~~~~~l 227 (936)
|.|+++.+.. + + . .++++...+|+.........+.+.++|+|+|||+|..++....+ .++++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999886552 1 1 1 26788889999887777667777899999999999877765433 47899999
Q ss_pred EEccchhhhcCCCHHHH----HHHHhhcCCCCcEEEEEeccchHHHHHHHHhcC-------CCEEEEeCCCCcccCCceE
Q psy7557 228 VLDEADRMLDLGFEPQI----NKTSIYINPNRQTVMTSATWNKDVQRVAKKYMV-------NPVKVNVGSLDLAATHTVT 296 (936)
Q Consensus 228 ViDEah~l~~~~~~~~~----~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~~~ 296 (936)
||||||.+.+..++..+ .++....++..|++++|||+++ ...++..+.. .+..+.-.. ......+.
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~-~~~va~~L~~~~~~~~~r~~~iv~~~--~~k~~~i~ 253 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEP-LEEVAKFLVGYEDDGEPRDCEIVDAR--FVKPFDIK 253 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCC-HHHHHHHhcCccccCCCCceEEEccC--CCccceEE
Confidence 99999999987665544 3444444567899999999975 3444443322 122221111 00011111
Q ss_pred EE-----EEEeCchhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhc------CCceeeecCCCCHHHHHHHH
Q psy7557 297 QK-----IIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQ------YRKSCSLYGDLSQEDREIAL 365 (936)
Q Consensus 297 ~~-----~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~------~~~~~~~h~~~~~~~R~~~~ 365 (936)
.. ............+...+.......+++||||||+..|+.++..|... +..+..+||+|++++|..++
T Consensus 254 v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve 333 (876)
T PRK13767 254 VISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVE 333 (876)
T ss_pred EeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHH
Confidence 00 00111112223333444333334678999999999999999999863 46789999999999999999
Q ss_pred HHhhcCCcEEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccC-CCceeEEEEecc-cChhhHHhHHHHHhh
Q psy7557 366 EDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRA-GKSGESITLMTR-KDWSHAHEIIPILEE 443 (936)
Q Consensus 366 ~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~-g~~g~~~~~~~~-~~~~~~~~l~~~l~~ 443 (936)
+.|++|+++|||||+++++|||+|++++||+|+.|.++.+|+||+|||||. |..+.++++... .|.-....+.+...+
T Consensus 334 ~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~e~~~~~~~~~~ 413 (876)
T PRK13767 334 EKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLVECAVLLKKARE 413 (876)
T ss_pred HHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCchhHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999987 444555555543 333333334444443
No 84
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=8.1e-46 Score=436.34 Aligned_cols=326 Identities=21% Similarity=0.368 Sum_probs=263.9
Q ss_pred HHHh-CCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHH
Q psy7557 90 QLEN-LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIER 168 (936)
Q Consensus 90 ~l~~-~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~ 168 (936)
.|++ +||.+++|+|.++|+.+++|+|+++++|||+|||++|++|++.. +..++|++|+++|+.|+.+
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------------~g~~lVisPl~sL~~dq~~ 71 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------------KGLTVVISPLISLMKDQVD 71 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------------CCcEEEEcCCHHHHHHHHH
Confidence 3444 79999999999999999999999999999999999999998842 3468999999999999888
Q ss_pred HHHhccCCCCEEEEEeCCccchHHH---HHhhc-CCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCC--CHH
Q psy7557 169 EVNKIDYKGLKAVCVYGGKEIEPQL---EKIRE-GCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLG--FEP 242 (936)
Q Consensus 169 ~~~~~~~~~~~~~~~~gg~~~~~~~---~~~~~-~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~--~~~ 242 (936)
.++.+ ++.+..+.++.+..... ..+.. ..+|+++||+++........+...++++|||||||++.+|| |++
T Consensus 72 ~l~~~---gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp 148 (591)
T TIGR01389 72 QLRAA---GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRP 148 (591)
T ss_pred HHHHc---CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHH
Confidence 88874 67788887776654432 22333 48999999999865443344556789999999999999987 888
Q ss_pred HHHHHHhhc--CCCCcEEEEEeccchHHHHHHHHhcC--CCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhc
Q psy7557 243 QINKTSIYI--NPNRQTVMTSATWNKDVQRVAKKYMV--NPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNM 318 (936)
Q Consensus 243 ~~~~i~~~~--~~~~q~~~~SAT~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~ 318 (936)
.+..+.... -+..+++++|||.++.+.......+. ++..+. .... ..++ .+.......+...+.+.+...
T Consensus 149 ~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~-~~~~---r~nl--~~~v~~~~~~~~~l~~~l~~~ 222 (591)
T TIGR01389 149 EYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEFI-TSFD---RPNL--RFSVVKKNNKQKFLLDYLKKH 222 (591)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe-cCCC---CCCc--EEEEEeCCCHHHHHHHHHHhc
Confidence 777665432 23566999999999888766655543 333332 1111 1122 222334455667777777764
Q ss_pred cCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEec
Q psy7557 319 DEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYD 398 (936)
Q Consensus 319 ~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d 398 (936)
.+.++||||++++.++.+++.|...++++..+||+|++++|..+++.|.+|+++|||||+++++|||+|+|++|||||
T Consensus 223 --~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~ 300 (591)
T TIGR01389 223 --RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYD 300 (591)
T ss_pred --CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcC
Confidence 367899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHH
Q psy7557 399 FPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEII 438 (936)
Q Consensus 399 ~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~ 438 (936)
+|.|+++|+||+|||||.|..|.|++++++.|......++
T Consensus 301 ~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i 340 (591)
T TIGR01389 301 MPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRI 340 (591)
T ss_pred CCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHH
Confidence 9999999999999999999999999999999887655554
No 85
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=6.2e-45 Score=416.26 Aligned_cols=303 Identities=19% Similarity=0.285 Sum_probs=235.9
Q ss_pred hCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHh
Q psy7557 613 NLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK 692 (936)
Q Consensus 613 ~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 692 (936)
.+||+.|+|+|.++|+.+++|+|+++++|||||||++|++|++. .++.+||++||++|+.|+.+.++.
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~------------~~~~~lVi~P~~~L~~dq~~~l~~ 73 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC------------SDGITLVISPLISLMEDQVLQLKA 73 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH------------cCCcEEEEecHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999873 245799999999999988888776
Q ss_pred ccCCCCEEEEEECCccchHHH---HHHhc-CceEEEeCchHHHHHH-HcCCC-CCCCceEEEEcccchhccCC--CHHHH
Q psy7557 693 IDYKGLKAVCVYGGKELEPQL---EKIRE-GCHILIATPGRLNDFV-SRASI-DLKAVSFVVLDEADRMLDLG--FEPQI 764 (936)
Q Consensus 693 ~~~~~~~~~~~~gg~~~~~~~---~~l~~-~~~IiV~Tp~~l~~~l-~~~~~-~~~~i~~lViDEah~l~~~~--~~~~~ 764 (936)
+ ++.+..+.|+....... ..+.. .++|+++||+++.... ....+ ...++++|||||||++++|| |++.+
T Consensus 74 ~---gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~ 150 (470)
T TIGR00614 74 S---GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDY 150 (470)
T ss_pred c---CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHH
Confidence 4 67777777765544322 22333 3799999999975322 01111 46789999999999999987 77777
Q ss_pred HHHhh--hcCCCceEEEEEecCChHHHHHHHHh--cCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHHHHhccC
Q psy7557 765 NKTSI--YINPNRQTVMTSATWNKDVQRVAKKY--MVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDE 840 (936)
Q Consensus 765 ~~i~~--~~~~~~q~v~~SAT~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~ 840 (936)
..+.. ...++.|++++|||+++.+....... +.+|..+..... ..++...+. .........+..++... .
T Consensus 151 ~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~----r~nl~~~v~-~~~~~~~~~l~~~l~~~-~ 224 (470)
T TIGR00614 151 KALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFD----RPNLYYEVR-RKTPKILEDLLRFIRKE-F 224 (470)
T ss_pred HHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCC----CCCcEEEEE-eCCccHHHHHHHHHHHh-c
Confidence 66532 23468899999999998876554443 345544433221 111221111 11113344455555532 2
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEEccCC
Q psy7557 841 ERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFP 920 (936)
Q Consensus 841 ~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~p 920 (936)
..+.+||||++++.|+.++..|...++.+..+||+|++++|..+++.|++|+++|||||+++++|||+|+|++||||++|
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P 304 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLP 304 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCC
Confidence 45667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhHhhhhhccCC
Q psy7557 921 SHIEEYVHRVGRTGEF 936 (936)
Q Consensus 921 ~s~~~yiqr~GRaGR~ 936 (936)
.|.++|+||+|||||.
T Consensus 305 ~s~~~y~Qr~GRaGR~ 320 (470)
T TIGR00614 305 KSMESYYQESGRAGRD 320 (470)
T ss_pred CCHHHHHhhhcCcCCC
Confidence 9999999999999994
No 86
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=3.3e-45 Score=439.17 Aligned_cols=336 Identities=19% Similarity=0.247 Sum_probs=263.9
Q ss_pred ChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHH-HhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEE
Q psy7557 76 SFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPI-LMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVL 154 (936)
Q Consensus 76 ~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~-~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~l 154 (936)
+|++ +++++.+.+.+++.||.+|+|+|.+|++. +++|+|++++||||||||++|.+|++.++.. .+.++|
T Consensus 2 ~~~~-l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~--------~~~~~l 72 (720)
T PRK00254 2 KVDE-LRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR--------EGGKAV 72 (720)
T ss_pred cHHH-cCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh--------cCCeEE
Confidence 4556 57899999999999999999999999996 7899999999999999999999999987742 356899
Q ss_pred EEcCcHHHHHHHHHHHHhccCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchh
Q psy7557 155 VMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADR 234 (936)
Q Consensus 155 il~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~ 234 (936)
||+|+++||.|+++.++.+...++++..++|+.+....+ ...++|+|+||++|..++.++...+++++++|+||+|.
T Consensus 73 ~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~~---~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~ 149 (720)
T PRK00254 73 YLVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTDEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHL 149 (720)
T ss_pred EEeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCchhh---hccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCc
Confidence 999999999999999998766789999999987654332 24589999999999888877666789999999999999
Q ss_pred hhcCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceE-----EEEEEeCch--hh
Q psy7557 235 MLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVT-----QKIIILDED--EK 307 (936)
Q Consensus 235 l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~~~--~k 307 (936)
+.+.+++..+..++..+..+.|++++|||+++ ..+++.++...... .. ..+..+. +.+...... .+
T Consensus 150 l~~~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~wl~~~~~~----~~--~rpv~l~~~~~~~~~~~~~~~~~~~ 222 (720)
T PRK00254 150 IGSYDRGATLEMILTHMLGRAQILGLSATVGN-AEELAEWLNAELVV----SD--WRPVKLRKGVFYQGFLFWEDGKIER 222 (720)
T ss_pred cCCccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHHHhCCcccc----CC--CCCCcceeeEecCCeeeccCcchhc
Confidence 99999999999999998889999999999984 56666654322211 00 0111111 111111111 11
Q ss_pred H-HHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhh---------------------------------cCCceeeec
Q psy7557 308 K-DWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLAC---------------------------------QYRKSCSLY 353 (936)
Q Consensus 308 ~-~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~---------------------------------~~~~~~~~h 353 (936)
. ......+......++++||||+|++.|+.++..|.. ...++..||
T Consensus 223 ~~~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hH 302 (720)
T PRK00254 223 FPNSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHH 302 (720)
T ss_pred chHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeC
Confidence 0 111112222223468999999999999887766632 123588999
Q ss_pred CCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEE-------ecCCC-CccccccCCCCcccCC--CceeEE
Q psy7557 354 GDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVIN-------YDFPS-HIEEYVHRVGRTGRAG--KSGESI 423 (936)
Q Consensus 354 ~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~-------~d~p~-s~~~y~qr~GRagR~g--~~g~~~ 423 (936)
|+|++++|..+++.|++|.++|||||+++++|+|+|++++||. ++.|. ++.+|+||+|||||.| ..|.++
T Consensus 303 agl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~i 382 (720)
T PRK00254 303 AGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAI 382 (720)
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEE
Confidence 9999999999999999999999999999999999999999993 55544 5679999999999975 569999
Q ss_pred EEecccC
Q psy7557 424 TLMTRKD 430 (936)
Q Consensus 424 ~~~~~~~ 430 (936)
++++.++
T Consensus 383 i~~~~~~ 389 (720)
T PRK00254 383 IVATTEE 389 (720)
T ss_pred EEecCcc
Confidence 9988654
No 87
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=6.6e-45 Score=440.60 Aligned_cols=332 Identities=19% Similarity=0.267 Sum_probs=247.3
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHH
Q psy7557 603 HYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTREL 682 (936)
Q Consensus 603 l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~L 682 (936)
+++.+.+.+++ +|..|||+|.+|||.+++|+|++++||||||||++|.+|++..+...........+.++||++||++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 45555555554 89999999999999999999999999999999999999999887643211111346789999999999
Q ss_pred HHHHHHHHHh-------c----c-C-CCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCC--CCCCceEE
Q psy7557 683 ATQIEREVNK-------I----D-Y-KGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASI--DLKAVSFV 747 (936)
Q Consensus 683 a~Q~~~~~~~-------~----~-~-~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~--~~~~i~~l 747 (936)
+.|+++.+.. + + . .++++...+|+.+.......+.+.++|+|+|||+|..++.+... .++++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999876542 1 1 1 26788889998887777677777899999999999888765533 47899999
Q ss_pred EEcccchhccCCCHHHH----HHHhhhcCCCceEEEEEecCChHHHHHHHHhcCC-----CeEEEeCCCCcccCCceEEE
Q psy7557 748 VLDEADRMLDLGFEPQI----NKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVN-----PVKVNVGSLDLAATHTVTQK 818 (936)
Q Consensus 748 ViDEah~l~~~~~~~~~----~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~~ 818 (936)
||||||.+.+..+...+ .++....++..|++++|||+++ ...++.++... +..+.+..........+...
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~-~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~ 255 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEP-LEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVI 255 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCC-HHHHHHHhcCccccCCCCceEEEccCCCccceEEEe
Confidence 99999999876655443 4444444578899999999964 45555554321 21111111100000001000
Q ss_pred -----EEEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhc------CCceEEEeCCCCHHHHHHHHHH
Q psy7557 819 -----IIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQ------YRKSCSLYGDLSQEDREIALED 887 (936)
Q Consensus 819 -----~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~------~~~~~~~h~~l~~~~R~~~~~~ 887 (936)
............+...+.......+++||||||+..|+.++..|... +.++..|||+|++++|..+++.
T Consensus 256 ~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~ 335 (876)
T PRK13767 256 SPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEK 335 (876)
T ss_pred ccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHH
Confidence 00011111222333333333234578999999999999999999863 3578999999999999999999
Q ss_pred hhcCCCcEEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 888 ITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 888 F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
|++|+++|||||+++++|||+|++++||+|+.|.++.+|+||+|||||.
T Consensus 336 fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~ 384 (876)
T PRK13767 336 LKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHR 384 (876)
T ss_pred HHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCC
Confidence 9999999999999999999999999999999999999999999999983
No 88
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=2.5e-45 Score=441.45 Aligned_cols=325 Identities=21% Similarity=0.291 Sum_probs=252.7
Q ss_pred hHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHh-hhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEE
Q psy7557 597 FKQAFQHYPEILRQLENLSFTTPSPIQAQAWPI-LMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLV 675 (936)
Q Consensus 597 f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~-~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~li 675 (936)
|++ +++++.+++.+.+.||.+|+|+|.+|++. +++|+|++++||||||||++|.+|++..+. .+.++||
T Consensus 3 ~~~-l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~---------~~~kal~ 72 (737)
T PRK02362 3 IAE-LPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA---------RGGKALY 72 (737)
T ss_pred hhh-cCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh---------cCCcEEE
Confidence 455 57899999999999999999999999998 678999999999999999999999998773 3678999
Q ss_pred EecCHHHHHHHHHHHHhccCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchh
Q psy7557 676 MAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRM 755 (936)
Q Consensus 676 l~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l 755 (936)
++|+++||.|+++.++++...++++..++|+...... ....++|+|+|||++..+++++...+++++++|+||+|.+
T Consensus 73 i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l 149 (737)
T PRK02362 73 IVPLRALASEKFEEFERFEELGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLI 149 (737)
T ss_pred EeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECcccc
Confidence 9999999999999999886668999999998655432 2245899999999999999877667899999999999999
Q ss_pred ccCCCHHHHHHHhhhc---CCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCccc----CCc--eEEEEEEcCcch
Q psy7557 756 LDLGFEPQINKTSIYI---NPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAA----THT--VTQKIIILDEDE 826 (936)
Q Consensus 756 ~~~~~~~~~~~i~~~~---~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~--~~~~~~~~~~~~ 826 (936)
.+.++...++.+...+ .+..|++++|||++ +..+++.|+....+.....+..... ... ............
T Consensus 150 ~d~~rg~~le~il~rl~~~~~~~qii~lSATl~-n~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~ 228 (737)
T PRK02362 150 DSANRGPTLEVTLAKLRRLNPDLQVVALSATIG-NADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPS 228 (737)
T ss_pred CCCcchHHHHHHHHHHHhcCCCCcEEEEcccCC-CHHHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccCCCcc
Confidence 9888888887765544 57899999999996 4566766654322111000000000 000 000000011111
Q ss_pred hHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcC------------------------------------CceE
Q psy7557 827 KKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQY------------------------------------RKSC 870 (936)
Q Consensus 827 k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~------------------------------------~~~~ 870 (936)
+.. ....+......++++||||+|++.|+.++..|.... .+++
T Consensus 229 ~~~-~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva 307 (737)
T PRK02362 229 KDD-TLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAA 307 (737)
T ss_pred chH-HHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEE
Confidence 111 122222222356789999999999999988876431 3788
Q ss_pred EEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEE----cc-----CCCChhhhHhhhhhccCC
Q psy7557 871 SLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVIN----YD-----FPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 871 ~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~----~d-----~p~s~~~yiqr~GRaGR~ 936 (936)
.|||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.+..+|+||+|||||.
T Consensus 308 ~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~ 382 (737)
T PRK02362 308 FHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRP 382 (737)
T ss_pred eecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCC
Confidence 9999999999999999999999999999999999999999999997 76 688999999999999994
No 89
>KOG0329|consensus
Probab=100.00 E-value=4.9e-46 Score=354.24 Aligned_cols=297 Identities=34% Similarity=0.547 Sum_probs=266.7
Q ss_pred ChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEE
Q psy7557 596 SFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLV 675 (936)
Q Consensus 596 ~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~li 675 (936)
-|.+ |-+.|++++++-..||.+|+.+|.++||...-|.|++++|.+|.|||.+|+++.++.+.- ......+|+
T Consensus 43 gfrd-fllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiep------v~g~vsvlv 115 (387)
T KOG0329|consen 43 GFRD-FLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEP------VDGQVSVLV 115 (387)
T ss_pred chhh-hhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCC------CCCeEEEEE
Confidence 4666 678999999999999999999999999999999999999999999999999998876621 133567999
Q ss_pred EecCHHHHHHHHHHHHhcc--CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccc
Q psy7557 676 MAPTRELATQIEREVNKID--YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEAD 753 (936)
Q Consensus 676 l~Pt~~La~Q~~~~~~~~~--~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah 753 (936)
+|.|||||-|+.+...+|+ .+++++...+||.........+++.++|+|+|||++..+.+++.+++++++.+|+||||
T Consensus 116 mchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcd 195 (387)
T KOG0329|consen 116 MCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECD 195 (387)
T ss_pred EeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHH
Confidence 9999999999999888875 45899999999999999989999999999999999999999999999999999999999
Q ss_pred hhccC-CCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHH
Q psy7557 754 RMLDL-GFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLM 832 (936)
Q Consensus 754 ~l~~~-~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 832 (936)
.|+++ ..+..+..|.+..|...|+++||||++++++..+++++.+|..+.+.....-..+.+.|++....+.+|...+.
T Consensus 196 kmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~ 275 (387)
T KOG0329|consen 196 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLN 275 (387)
T ss_pred HHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhh
Confidence 99864 57888999999999999999999999999999999999999999888766666778888888899999999999
Q ss_pred HHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCC
Q psy7557 833 EFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLT 912 (936)
Q Consensus 833 ~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~ 912 (936)
+++..+ .-..++||+.+... | + | ..+ +|||++++||+|+..++
T Consensus 276 dLLd~L--eFNQVvIFvKsv~R-------l--------------~----------f---~kr-~vat~lfgrgmdiervN 318 (387)
T KOG0329|consen 276 DLLDVL--EFNQVVIFVKSVQR-------L--------------S----------F---QKR-LVATDLFGRGMDIERVN 318 (387)
T ss_pred hhhhhh--hhcceeEeeehhhh-------h--------------h----------h---hhh-hHHhhhhccccCcccce
Confidence 999887 56789999988765 1 0 2 123 89999999999999999
Q ss_pred EEEEccCCCChhhhHhhhhhccCC
Q psy7557 913 HVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 913 ~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
.|+|||+|.+.++|+||+|||||+
T Consensus 319 i~~NYdmp~~~DtYlHrv~rAgrf 342 (387)
T KOG0329|consen 319 IVFNYDMPEDSDTYLHRVARAGRF 342 (387)
T ss_pred eeeccCCCCCchHHHHHhhhhhcc
Confidence 999999999999999999999996
No 90
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=9.4e-44 Score=410.66 Aligned_cols=314 Identities=18% Similarity=0.208 Sum_probs=247.7
Q ss_pred CCCCCCcHHHHHHHHHHhcCC-cEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEE-EEEcCcHHHHHHHHHHHH
Q psy7557 94 LSFTTPSPIQAQAWPILMSGH-DMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSV-LVMAPTRELATQIEREVN 171 (936)
Q Consensus 94 ~g~~~~~~~Q~~ai~~~~~g~-d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~-lil~Pt~~La~Q~~~~~~ 171 (936)
.||. |||||.+++|.++.|+ ++++.+|||||||.+|.++.+.. .. ....++. ++++|||+||.|+++.++
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~------~~~~~~rLv~~vPtReLa~Qi~~~~~ 83 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EI------GAKVPRRLVYVVNRRTVVDQVTEEAE 83 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cc------cccccceEEEeCchHHHHHHHHHHHH
Confidence 4896 9999999999999998 57778999999999765444421 11 1233444 457799999999999998
Q ss_pred hccC------------------------CCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcC-------
Q psy7557 172 KIDY------------------------KGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASID------- 220 (936)
Q Consensus 172 ~~~~------------------------~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~------- 220 (936)
+++. .++++..++||.+...++..+..+++|||||+ |++.++.++
T Consensus 84 ~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg~~~ 159 (844)
T TIGR02621 84 KIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGYGCGF 159 (844)
T ss_pred HHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCcccccccccc
Confidence 8742 14889999999999999999999999999994 666655542
Q ss_pred ---------CCCceEEEEccchhhhcCCCHHHHHHHHhhc--CCC---CcEEEEEeccchHHHHHHHHhcCCCEEEEeCC
Q psy7557 221 ---------LKAVSFVVLDEADRMLDLGFEPQINKTSIYI--NPN---RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGS 286 (936)
Q Consensus 221 ---------~~~~~~lViDEah~l~~~~~~~~~~~i~~~~--~~~---~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~ 286 (936)
++++++||||||| ++++|...+..|...+ ++. +|+++||||+|..+..+...++.++..+.+..
T Consensus 160 ~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~ 237 (844)
T TIGR02621 160 KSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLK 237 (844)
T ss_pred ccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeeccc
Confidence 6889999999999 7899999999999964 332 69999999999988888888888887766654
Q ss_pred CCcccCCceEEEEEEeCchhhHHHHHHHHHh-ccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHH---
Q psy7557 287 LDLAATHTVTQKIIILDEDEKKDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDRE--- 362 (936)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~--- 362 (936)
.... ...+.+ ++.++...|...+...+.. ....++++||||||++.|..+++.|...++ ..+||+|++.+|.
T Consensus 238 ~~l~-a~ki~q-~v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~ 313 (844)
T TIGR02621 238 KRLA-AKKIVK-LVPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLV 313 (844)
T ss_pred cccc-ccceEE-EEecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHH
Confidence 3322 233444 3344444454443333222 223467899999999999999999998776 8899999999999
Q ss_pred --HHHHHhhc----CC-------cEEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCce-eEEEEecc
Q psy7557 363 --IALEDITS----GY-------ARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSG-ESITLMTR 428 (936)
Q Consensus 363 --~~~~~f~~----g~-------~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g-~~~~~~~~ 428 (936)
.+++.|++ |+ .+|||||+++++||||+. ++||++..| .++|+||+||+||.|+.| .++++++.
T Consensus 314 ~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 314 KKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred HHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 88999987 54 789999999999999986 899998877 689999999999999864 44666644
No 91
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=2.1e-43 Score=413.63 Aligned_cols=306 Identities=21% Similarity=0.318 Sum_probs=238.3
Q ss_pred HHHHHh-CCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHH
Q psy7557 608 LRQLEN-LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQI 686 (936)
Q Consensus 608 ~~~l~~-~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~ 686 (936)
.+.|++ +||..|+|+|.++++.+++|+|+++++|||+|||++|++|++.. +..+||++|+++|+.|+
T Consensus 14 ~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------------~g~tlVisPl~sL~~dq 81 (607)
T PRK11057 14 KQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------------DGLTLVVSPLISLMKDQ 81 (607)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------------CCCEEEEecHHHHHHHH
Confidence 344443 79999999999999999999999999999999999999999832 34689999999999998
Q ss_pred HHHHHhccCCCCEEEEEECCccchHHHH---HHhc-CceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCC--C
Q psy7557 687 EREVNKIDYKGLKAVCVYGGKELEPQLE---KIRE-GCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLG--F 760 (936)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~-~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~--~ 760 (936)
.+.++.+ ++.+.++.++........ .+.. ..+++++||+++........+...++++|||||||++.+|| |
T Consensus 82 v~~l~~~---gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~f 158 (607)
T PRK11057 82 VDQLLAN---GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDF 158 (607)
T ss_pred HHHHHHc---CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcc
Confidence 8888764 677777777665544322 2333 36899999999863222122334578999999999999987 7
Q ss_pred HHHHHHHhhh--cCCCceEEEEEecCChHHHHHHHH-h-cCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHHHH
Q psy7557 761 EPQINKTSIY--INPNRQTVMTSATWNKDVQRVAKK-Y-MVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFD 836 (936)
Q Consensus 761 ~~~~~~i~~~--~~~~~q~v~~SAT~~~~~~~~~~~-~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~ 836 (936)
++.+..+... ..++.+++++|||+++........ + +.+|....... . ..++. +.......+...+...+.
T Consensus 159 r~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~-~---r~nl~--~~v~~~~~~~~~l~~~l~ 232 (607)
T PRK11057 159 RPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSF-D---RPNIR--YTLVEKFKPLDQLMRYVQ 232 (607)
T ss_pred cHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCC-C---CCcce--eeeeeccchHHHHHHHHH
Confidence 7776655332 236789999999999877654333 3 34554333221 1 11111 222233334445555555
Q ss_pred hccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEE
Q psy7557 837 NMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVIN 916 (936)
Q Consensus 837 ~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~ 916 (936)
.. ..+++||||+|++.|+.++..|...++.+..+||+|++++|..+++.|++|+++|||||+++++|||+|+|++|||
T Consensus 233 ~~--~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~ 310 (607)
T PRK11057 233 EQ--RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVH 310 (607)
T ss_pred hc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEE
Confidence 43 4578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChhhhHhhhhhccCC
Q psy7557 917 YDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 917 ~d~p~s~~~yiqr~GRaGR~ 936 (936)
||+|.|.++|+||+|||||.
T Consensus 311 ~d~P~s~~~y~Qr~GRaGR~ 330 (607)
T PRK11057 311 FDIPRNIESYYQETGRAGRD 330 (607)
T ss_pred eCCCCCHHHHHHHhhhccCC
Confidence 99999999999999999994
No 92
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=8.8e-44 Score=426.92 Aligned_cols=326 Identities=18% Similarity=0.233 Sum_probs=253.8
Q ss_pred ChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHh-hhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEE
Q psy7557 596 SFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPI-LMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVL 674 (936)
Q Consensus 596 ~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~-~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~l 674 (936)
.|++ +++++.+.+.+++.||.+|+|+|.+|++. +++|+|++++||||||||++|.+|++.++.. .+.++|
T Consensus 2 ~~~~-l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~--------~~~~~l 72 (720)
T PRK00254 2 KVDE-LRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR--------EGGKAV 72 (720)
T ss_pred cHHH-cCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh--------cCCeEE
Confidence 3555 57899999999999999999999999996 7899999999999999999999999987642 357899
Q ss_pred EEecCHHHHHHHHHHHHhccCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccch
Q psy7557 675 VMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADR 754 (936)
Q Consensus 675 il~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~ 754 (936)
||+|+++||.|+++.++.+...++++..++|+.+.... ....++|+|+||+++..++++....++++++||+||+|.
T Consensus 73 ~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~ 149 (720)
T PRK00254 73 YLVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHL 149 (720)
T ss_pred EEeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCc
Confidence 99999999999999999876678999999998765432 234589999999999999887767789999999999999
Q ss_pred hccCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcch--h-HHHH
Q psy7557 755 MLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDE--K-KDWL 831 (936)
Q Consensus 755 l~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--k-~~~l 831 (936)
+.+.++...++.+...+..+.|++++|||++. ..+++.++..........+..... ....+......... + ....
T Consensus 150 l~~~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~wl~~~~~~~~~rpv~l~~-~~~~~~~~~~~~~~~~~~~~~~ 227 (720)
T PRK00254 150 IGSYDRGATLEMILTHMLGRAQILGLSATVGN-AEELAEWLNAELVVSDWRPVKLRK-GVFYQGFLFWEDGKIERFPNSW 227 (720)
T ss_pred cCCccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHHHhCCccccCCCCCCccee-eEecCCeeeccCcchhcchHHH
Confidence 99888999999999988889999999999974 577777654332111111111000 00111111111110 0 0111
Q ss_pred HHHHHhccCCCCcEEEEcCChHHHHHHHHHHHh---------------------------------cCCceEEEeCCCCH
Q psy7557 832 MEFFDNMDEERDKVMVFMGRKASVSAMSSDLAC---------------------------------QYRKSCSLYGDLSQ 878 (936)
Q Consensus 832 ~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~---------------------------------~~~~~~~~h~~l~~ 878 (936)
...+......++++||||+|++.|+.++..|.. ...+++.|||+|++
T Consensus 228 ~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~ 307 (720)
T PRK00254 228 ESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGR 307 (720)
T ss_pred HHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCH
Confidence 112222222467899999999999888766642 12468999999999
Q ss_pred HHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEE-------ccCCC-ChhhhHhhhhhccC
Q psy7557 879 EDREIALEDITSGYARICVATDVASRGLDVPDLTHVIN-------YDFPS-HIEEYVHRVGRTGE 935 (936)
Q Consensus 879 ~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~-------~d~p~-s~~~yiqr~GRaGR 935 (936)
++|..+++.|++|.++|||||+++++|+|+|++++||. ++.|. +..+|+||+|||||
T Consensus 308 ~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR 372 (720)
T PRK00254 308 TERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGR 372 (720)
T ss_pred HHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCC
Confidence 99999999999999999999999999999999999994 55543 57799999999999
No 93
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=3.4e-43 Score=415.98 Aligned_cols=355 Identities=20% Similarity=0.228 Sum_probs=269.7
Q ss_pred HHHhCCCCCCcHHHHHHHHHHhcC------CcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHH
Q psy7557 90 QLENLSFTTPSPIQAQAWPILMSG------HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELA 163 (936)
Q Consensus 90 ~l~~~g~~~~~~~Q~~ai~~~~~g------~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La 163 (936)
....++| +||++|.+|++.+.++ +|++++||||||||++|++|++..+ ..+.+++|++||++||
T Consensus 254 ~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~---------~~g~q~lilaPT~~LA 323 (681)
T PRK10917 254 FLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAI---------EAGYQAALMAPTEILA 323 (681)
T ss_pred HHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHH---------HcCCeEEEEeccHHHH
Confidence 3455788 7999999999999876 4899999999999999999998766 3477999999999999
Q ss_pred HHHHHHHHhcc-CCCCEEEEEeCCccch---HHHHHhhcC-CcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcC
Q psy7557 164 TQIEREVNKID-YKGLKAVCVYGGKEIE---PQLEKIREG-CHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDL 238 (936)
Q Consensus 164 ~Q~~~~~~~~~-~~~~~~~~~~gg~~~~---~~~~~~~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~ 238 (936)
.|+++.++++. ..++++..++|+.... .....+..| ++|+||||+.+.+ .+.+++++++|+||+|++.
T Consensus 324 ~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg-- 396 (681)
T PRK10917 324 EQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFG-- 396 (681)
T ss_pred HHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhh--
Confidence 99999999964 5689999999998753 344455555 9999999987743 4468899999999999963
Q ss_pred CCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhc
Q psy7557 239 GFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNM 318 (936)
Q Consensus 239 ~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~ 318 (936)
......+......+++++||||+.+....+......++..+...+.. ...+...+.. . .+...+++.+...
T Consensus 397 ---~~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~---r~~i~~~~~~--~-~~~~~~~~~i~~~ 467 (681)
T PRK10917 397 ---VEQRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPG---RKPITTVVIP--D-SRRDEVYERIREE 467 (681)
T ss_pred ---HHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCC---CCCcEEEEeC--c-ccHHHHHHHHHHH
Confidence 22233333345568999999998776655444333333333222211 1223333322 2 2223344444443
Q ss_pred cCCCCcEEEEeCch--------HHHHHHHHHhhhc--CCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCC
Q psy7557 319 DEERDKVMVFMGRK--------ASVSAMSSDLACQ--YRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDV 388 (936)
Q Consensus 319 ~~~~~~~iVF~~~~--------~~~~~l~~~L~~~--~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDi 388 (936)
...+.+++|||+.. ..+..+++.|... +.++..+||+|++.+|..++++|++|+++|||||+++++|||+
T Consensus 468 ~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDi 547 (681)
T PRK10917 468 IAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDV 547 (681)
T ss_pred HHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCccc
Confidence 35678999999854 4566777888765 4689999999999999999999999999999999999999999
Q ss_pred CCCcEEEEecCCC-CccccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHhhcCCccchhhhhccccceeEeecCC
Q psy7557 389 PDLTHVINYDFPS-HIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEGGHESYMIWRRDSRIALHVILEGG 467 (936)
Q Consensus 389 p~v~~VI~~d~p~-s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (936)
|++++||++++|. +...|.||+||+||.|..|.|+++++........+.++.++.. .+.+.+...+.++++.+-..|.
T Consensus 548 p~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~~~-~dgf~iae~dl~~rg~g~~~g~ 626 (681)
T PRK10917 548 PNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMRET-NDGFVIAEKDLELRGPGELLGT 626 (681)
T ss_pred CCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHHHHh-cchHHHHHHhHhhCCCccccCc
Confidence 9999999999997 5788889999999999999999999755445566677777765 3566777788887777666666
Q ss_pred ceee
Q psy7557 468 EEVV 471 (936)
Q Consensus 468 ~~~~ 471 (936)
.|.+
T Consensus 627 ~q~g 630 (681)
T PRK10917 627 RQSG 630 (681)
T ss_pred eecC
Confidence 6554
No 94
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.7e-43 Score=423.08 Aligned_cols=332 Identities=20% Similarity=0.257 Sum_probs=255.9
Q ss_pred hHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEE
Q psy7557 77 FKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVM 156 (936)
Q Consensus 77 f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil 156 (936)
|++ +++++.+++.+.+.||. |+|+|.++++.+.+|+|++++||||||||++|.++++..+. .+.++||+
T Consensus 3 ~~~-~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~---------~~~k~v~i 71 (674)
T PRK01172 3 ISD-LGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFL---------AGLKSIYI 71 (674)
T ss_pred Hhh-cCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHH---------hCCcEEEE
Confidence 555 67899999999999996 99999999999999999999999999999999999887763 25689999
Q ss_pred cCcHHHHHHHHHHHHhccCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhh
Q psy7557 157 APTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRML 236 (936)
Q Consensus 157 ~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~ 236 (936)
+|+++||.|+++.++++...|+++...+|+...... ....++|+|+|||++..++.+....+++++++|+||||++.
T Consensus 72 ~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~ 148 (674)
T PRK01172 72 VPLRSLAMEKYEELSRLRSLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIG 148 (674)
T ss_pred echHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhcc
Confidence 999999999999999876678899888887664432 22458999999999988887766668999999999999999
Q ss_pred cCCCHHHHHHHHhh---cCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEE-----EeCchh-h
Q psy7557 237 DLGFEPQINKTSIY---INPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKII-----ILDEDE-K 307 (936)
Q Consensus 237 ~~~~~~~~~~i~~~---~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~-k 307 (936)
+.++++.++.+... .+++.|++++|||+++ ..+++.++......... .+..+...+. ..+... .
T Consensus 149 d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~wl~~~~~~~~~------r~vpl~~~i~~~~~~~~~~~~~~ 221 (674)
T PRK01172 149 DEDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQWLNASLIKSNF------RPVPLKLGILYRKRLILDGYERS 221 (674)
T ss_pred CCCccHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHHHhCCCccCCCC------CCCCeEEEEEecCeeeecccccc
Confidence 88888877776543 4578999999999974 56666654322211000 1111111111 111111 1
Q ss_pred HHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcC-------------------------CceeeecCCCCHHHHH
Q psy7557 308 KDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQY-------------------------RKSCSLYGDLSQEDRE 362 (936)
Q Consensus 308 ~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~-------------------------~~~~~~h~~~~~~~R~ 362 (936)
...+..++......++++||||++++.++.++..|.... .++..+||+|++++|.
T Consensus 222 ~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~ 301 (674)
T PRK01172 222 QVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRR 301 (674)
T ss_pred cccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHH
Confidence 111333344333457899999999999999998886431 2577899999999999
Q ss_pred HHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEecC---------CCCccccccCCCCcccCCC--ceeEEEEecccC
Q psy7557 363 IALEDITSGYARICVATDVASRGLDVPDLTHVINYDF---------PSHIEEYVHRVGRTGRAGK--SGESITLMTRKD 430 (936)
Q Consensus 363 ~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~---------p~s~~~y~qr~GRagR~g~--~g~~~~~~~~~~ 430 (936)
.+++.|++|.++|||||+++++|+|+|+..+|| +|. |-+..+|.||+|||||.|. .|.+++++...+
T Consensus 302 ~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~ 379 (674)
T PRK01172 302 FIEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPA 379 (674)
T ss_pred HHHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcc
Confidence 999999999999999999999999999865554 443 4477889999999999985 577888876543
No 95
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=1.6e-42 Score=407.89 Aligned_cols=359 Identities=20% Similarity=0.253 Sum_probs=266.5
Q ss_pred HHHHHHhCCCCCCcHHHHHHHHHHhcC------CcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcH
Q psy7557 87 ILRQLENLSFTTPSPIQAQAWPILMSG------HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTR 160 (936)
Q Consensus 87 l~~~l~~~g~~~~~~~Q~~ai~~~~~g------~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~ 160 (936)
+.+.+..++| +||++|.+||+.++++ .+.+++||||||||++|++|++..+ ..+.+++|++||+
T Consensus 225 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~---------~~g~qvlilaPT~ 294 (630)
T TIGR00643 225 LTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAI---------EAGYQVALMAPTE 294 (630)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHH---------HcCCcEEEECCHH
Confidence 3456677899 7999999999999876 3689999999999999999998766 3467899999999
Q ss_pred HHHHHHHHHHHhc-cCCCCEEEEEeCCccchH---HHHHhhcC-CcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhh
Q psy7557 161 ELATQIEREVNKI-DYKGLKAVCVYGGKEIEP---QLEKIREG-CHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRM 235 (936)
Q Consensus 161 ~La~Q~~~~~~~~-~~~~~~~~~~~gg~~~~~---~~~~~~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l 235 (936)
+||.|+++.++++ ...++++..++|+..... .+..+..+ ++|+|+||+.+.+ .+.+.+++++||||+|++
T Consensus 295 ~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~f 369 (630)
T TIGR00643 295 ILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRF 369 (630)
T ss_pred HHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhc
Confidence 9999999999996 456899999999977654 34455544 8999999987743 356789999999999985
Q ss_pred hcCCCHHHHHHHHhhcC--CCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHH
Q psy7557 236 LDLGFEPQINKTSIYIN--PNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLME 313 (936)
Q Consensus 236 ~~~~~~~~~~~i~~~~~--~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 313 (936)
... +...+..... ..+++++||||+.+....+......+...+...+.. ...+...+ +....+ ..++.
T Consensus 370 g~~----qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~---r~~i~~~~--~~~~~~-~~~~~ 439 (630)
T TIGR00643 370 GVE----QRKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPG---RKPITTVL--IKHDEK-DIVYE 439 (630)
T ss_pred cHH----HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCC---CCceEEEE--eCcchH-HHHHH
Confidence 321 1122222222 268999999998765544433222222222111111 12233322 222222 44455
Q ss_pred HHHhccCCCCcEEEEeCch--------HHHHHHHHHhhhc--CCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccc
Q psy7557 314 FFDNMDEERDKVMVFMGRK--------ASVSAMSSDLACQ--YRKSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 383 (936)
Q Consensus 314 ~l~~~~~~~~~~iVF~~~~--------~~~~~l~~~L~~~--~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~ 383 (936)
.+......+.+++|||+.. ..+..+++.|... +..+..+||+|++.+|..+++.|++|+.+|||||++++
T Consensus 440 ~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie 519 (630)
T TIGR00643 440 FIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIE 519 (630)
T ss_pred HHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceee
Confidence 5544334578999999876 4566777777653 67899999999999999999999999999999999999
Q ss_pred cCCCCCCCcEEEEecCCC-CccccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHhhcCCccchhhhhccccceeE
Q psy7557 384 RGLDVPDLTHVINYDFPS-HIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEGGHESYMIWRRDSRIALHV 462 (936)
Q Consensus 384 ~GiDip~v~~VI~~d~p~-s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 462 (936)
+|||+|++++||+++.|. +...|.||+||+||.|..|.|++++.........+.++.+... .+.+.+...+.++++.+
T Consensus 520 ~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~~~~~~~~~rl~~~~~~-~dgf~iae~dl~~Rg~g 598 (630)
T TIGR00643 520 VGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKNPKSESAKKRLRVMADT-LDGFVIAEEDLELRGPG 598 (630)
T ss_pred cCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECCCCCHHHHHHHHHHHhh-cccHHHHHHHHhcCCCc
Confidence 999999999999999997 6788899999999999999999999544445555566666654 35566677787777766
Q ss_pred eecCCceee
Q psy7557 463 ILEGGEEVV 471 (936)
Q Consensus 463 ~~~~~~~~~ 471 (936)
-..|.+|++
T Consensus 599 ~~~g~~QsG 607 (630)
T TIGR00643 599 DLLGTKQSG 607 (630)
T ss_pred ccCCCcccC
Confidence 666666655
No 96
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.4e-42 Score=408.83 Aligned_cols=300 Identities=20% Similarity=0.364 Sum_probs=241.3
Q ss_pred CCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc
Q psy7557 614 LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693 (936)
Q Consensus 614 ~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 693 (936)
+||++|+|+|.++|+.+++|+|+++++|||+|||+||++|++. .+..++|++|+++|+.|..+.++.+
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~------------~~g~~lVisPl~sL~~dq~~~l~~~ 76 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALL------------LKGLTVVISPLISLMKDQVDQLRAA 76 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHH------------cCCcEEEEcCCHHHHHHHHHHHHHc
Confidence 8999999999999999999999999999999999999999883 1346899999999999888888774
Q ss_pred cCCCCEEEEEECCccchHHHHH---Hh-cCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCC--CHHHHHHH
Q psy7557 694 DYKGLKAVCVYGGKELEPQLEK---IR-EGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLG--FEPQINKT 767 (936)
Q Consensus 694 ~~~~~~~~~~~gg~~~~~~~~~---l~-~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~--~~~~~~~i 767 (936)
++.+..+.++.+....... +. ...+|+++||+++........+...++++|||||||++.+|| |++.+..+
T Consensus 77 ---gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l 153 (591)
T TIGR01389 77 ---GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRL 153 (591)
T ss_pred ---CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHH
Confidence 6778888887765544322 22 347999999999865433334456789999999999999877 78777766
Q ss_pred hhhc--CCCceEEEEEecCChHHHHHHHHhc--CCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHHHHhccCCCC
Q psy7557 768 SIYI--NPNRQTVMTSATWNKDVQRVAKKYM--VNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERD 843 (936)
Q Consensus 768 ~~~~--~~~~q~v~~SAT~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~ 843 (936)
.... -+..+++++|||+++.+.......+ .++..+. .... ..++ .+.......+...+.+++... ...
T Consensus 154 ~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~-~~~~---r~nl--~~~v~~~~~~~~~l~~~l~~~--~~~ 225 (591)
T TIGR01389 154 GSLAERFPQVPRIALTATADAETRQDIRELLRLADANEFI-TSFD---RPNL--RFSVVKKNNKQKFLLDYLKKH--RGQ 225 (591)
T ss_pred HHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe-cCCC---CCCc--EEEEEeCCCHHHHHHHHHHhc--CCC
Confidence 4433 2456699999999988876555444 2333332 1111 1112 122333445666777777664 257
Q ss_pred cEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEEccCCCCh
Q psy7557 844 KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHI 923 (936)
Q Consensus 844 ~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~p~s~ 923 (936)
++||||+|++.|+.++..|...++.+..+||+|++++|..+++.|.+|+++|||||+++++|||+|++++||||++|.|.
T Consensus 226 ~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~ 305 (591)
T TIGR01389 226 SGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNL 305 (591)
T ss_pred CEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhhhccCC
Q psy7557 924 EEYVHRVGRTGEF 936 (936)
Q Consensus 924 ~~yiqr~GRaGR~ 936 (936)
++|+||+|||||.
T Consensus 306 ~~y~Q~~GRaGR~ 318 (591)
T TIGR01389 306 ESYYQEAGRAGRD 318 (591)
T ss_pred HHHhhhhccccCC
Confidence 9999999999994
No 97
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=6.1e-43 Score=387.40 Aligned_cols=330 Identities=22% Similarity=0.340 Sum_probs=260.6
Q ss_pred HHHHh-CCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHH
Q psy7557 89 RQLEN-LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIE 167 (936)
Q Consensus 89 ~~l~~-~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~ 167 (936)
..|+. +||...+|-|.++|..+++|+|+++.+|||+||++||.+|++.. ...+|||+|..+|-..+.
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~------------~G~TLVVSPLiSLM~DQV 74 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL------------EGLTLVVSPLISLMKDQV 74 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc------------CCCEEEECchHHHHHHHH
Confidence 34544 69999999999999999999999999999999999999999843 236899999999955554
Q ss_pred HHHHhccCCCCEEEEEeCCccchHH---HHHhhcC-CcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCC--CH
Q psy7557 168 REVNKIDYKGLKAVCVYGGKEIEPQ---LEKIREG-CHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLG--FE 241 (936)
Q Consensus 168 ~~~~~~~~~~~~~~~~~gg~~~~~~---~~~~~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~--~~ 241 (936)
+.++ ..|+.+..+.+..+..+. +..+..| .++++-+||++..--....+.-..+.++||||||++.+|| |+
T Consensus 75 ~~l~---~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFR 151 (590)
T COG0514 75 DQLE---AAGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFR 151 (590)
T ss_pred HHHH---HcCceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccC
Confidence 4444 467888888777554433 3445555 7999999999854333233335678899999999999998 99
Q ss_pred HHHHHHHhhcC--CCCcEEEEEeccchHHHHHHHHhcC--CCEEEEeCCCCcccCCceEEEEEEeC-chhhHHHHHHHHH
Q psy7557 242 PQINKTSIYIN--PNRQTVMTSATWNKDVQRVAKKYMV--NPVKVNVGSLDLAATHTVTQKIIILD-EDEKKDWLMEFFD 316 (936)
Q Consensus 242 ~~~~~i~~~~~--~~~q~~~~SAT~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~ 316 (936)
+.+.++..... ++.+++++|||.++.+...+...+. ++..+...... .++...+.... ...+..++.+
T Consensus 152 P~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdR----pNi~~~v~~~~~~~~q~~fi~~--- 224 (590)
T COG0514 152 PDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDR----PNLALKVVEKGEPSDQLAFLAT--- 224 (590)
T ss_pred HhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCC----chhhhhhhhcccHHHHHHHHHh---
Confidence 99998765543 4789999999999998876655443 33333332221 22222222211 2233332222
Q ss_pred hccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEE
Q psy7557 317 NMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVIN 396 (936)
Q Consensus 317 ~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~ 396 (936)
......+..||||.|++.++.+++.|...|+.+..|||||+.++|+.+.+.|..++++|+|||.++++|||.|||++|||
T Consensus 225 ~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH 304 (590)
T COG0514 225 VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIH 304 (590)
T ss_pred hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEE
Confidence 12245667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHHHH
Q psy7557 397 YDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPI 440 (936)
Q Consensus 397 ~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~ 440 (936)
||+|.|+++|+|.+|||||+|.+..|++|+++.|......+++.
T Consensus 305 ~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 305 YDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred ecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 99999999999999999999999999999999998866666554
No 98
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.6e-42 Score=398.03 Aligned_cols=356 Identities=23% Similarity=0.286 Sum_probs=278.5
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHH
Q psy7557 83 HYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTREL 162 (936)
Q Consensus 83 ~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~L 162 (936)
++|.+.+.++.. |++|||.|.+|||.+.+|+|+|++||||||||+++.+|++..+.... +.....+..+|||+|.|+|
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~-~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG-KGKLEDGIYALYISPLKAL 85 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc-CCCCCCceEEEEeCcHHHH
Confidence 678889999888 99999999999999999999999999999999999999999987653 1223457889999999999
Q ss_pred HHHHHHHHHhc-cCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCC--cCCCCceEEEEccchhhhcCC
Q psy7557 163 ATQIEREVNKI-DYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRAS--IDLKAVSFVVLDEADRMLDLG 239 (936)
Q Consensus 163 a~Q~~~~~~~~-~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~--~~~~~~~~lViDEah~l~~~~ 239 (936)
..++.+.+... ...|+++..-+|+.+........++.+||+|+|||.|.-++.... -.|.+++++|+||+|.+.+..
T Consensus 86 n~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 86 NNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccc
Confidence 99999999985 467899988899888877777788889999999999977776532 348999999999999987655
Q ss_pred CHHH----HHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCC--CEEEEeCCCCcccCCceEEEEEEeCch-----hhH
Q psy7557 240 FEPQ----INKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVN--PVKVNVGSLDLAATHTVTQKIIILDED-----EKK 308 (936)
Q Consensus 240 ~~~~----~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~k~ 308 (936)
.+.+ ++++....+ +.|.+++|||.. +....++++... +..|.-.... ......+...... .-.
T Consensus 166 RG~~Lsl~LeRL~~l~~-~~qRIGLSATV~-~~~~varfL~g~~~~~~Iv~~~~~----k~~~i~v~~p~~~~~~~~~~~ 239 (814)
T COG1201 166 RGVQLALSLERLRELAG-DFQRIGLSATVG-PPEEVAKFLVGFGDPCEIVDVSAA----KKLEIKVISPVEDLIYDEELW 239 (814)
T ss_pred cchhhhhhHHHHHhhCc-ccEEEeehhccC-CHHHHHHHhcCCCCceEEEEcccC----CcceEEEEecCCccccccchh
Confidence 4443 344444445 899999999998 566777776655 4444322211 1222222221111 112
Q ss_pred HHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcC-CceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCC
Q psy7557 309 DWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQY-RKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLD 387 (936)
Q Consensus 309 ~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~-~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiD 387 (936)
..++..+.........++||+||+..++.++..|...+ ..+..|||.++.+.|..++++|++|+.+++|||+.++-|||
T Consensus 240 ~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGID 319 (814)
T COG1201 240 AALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGID 319 (814)
T ss_pred HHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccc
Confidence 22333333333334689999999999999999999887 88999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEecCCCCccccccCCCCcccC-CCceeEEEEeccc-ChhhHHhHHHHHhhcCC
Q psy7557 388 VPDLTHVINYDFPSHIEEYVHRVGRTGRA-GKSGESITLMTRK-DWSHAHEIIPILEEGGH 446 (936)
Q Consensus 388 ip~v~~VI~~d~p~s~~~y~qr~GRagR~-g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~ 446 (936)
+.+++.||+|+.|+++..++||+||+|+. |....++++.... |.-....+.+.+.....
T Consensus 320 iG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~l 380 (814)
T COG1201 320 IGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKL 380 (814)
T ss_pred cCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999976 6667888777652 33334444444444443
No 99
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=3.8e-42 Score=397.36 Aligned_cols=302 Identities=19% Similarity=0.209 Sum_probs=237.2
Q ss_pred CCCCCCcHHHHHHHHhhhcCC-cEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEE-EEecCHHHHHHHHHHHH
Q psy7557 614 LSFTTPSPIQAQAWPILMSGH-DMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVL-VMAPTRELATQIEREVN 691 (936)
Q Consensus 614 ~g~~~p~~iQ~~ai~~~l~g~-d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~l-il~Pt~~La~Q~~~~~~ 691 (936)
.||+ |+|||.+++|.++.|+ ++++.||||||||.+|.++++... . ....++.| +++|||+||.|+++.+.
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~-~------~~~~~~rLv~~vPtReLa~Qi~~~~~ 83 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVE-I------GAKVPRRLVYVVNRRTVVDQVTEEAE 83 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcccc-c------cccccceEEEeCchHHHHHHHHHHHH
Confidence 4896 9999999999999998 677789999999997665544211 1 12344455 47799999999999998
Q ss_pred hccC------------------------CCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCC--------
Q psy7557 692 KIDY------------------------KGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASI-------- 739 (936)
Q Consensus 692 ~~~~------------------------~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~-------- 739 (936)
+++. .++++..++||.+...+...+..+++|||||+ +++.++.+
T Consensus 84 ~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg~~~ 159 (844)
T TIGR02621 84 KIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGYGCGF 159 (844)
T ss_pred HHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCcccccccccc
Confidence 8742 14889999999999999999999999999995 44444443
Q ss_pred --------CCCCceEEEEcccchhccCCCHHHHHHHhhhc--CCC---ceEEEEEecCChHHHHHHHHhcCCCeEEEeCC
Q psy7557 740 --------DLKAVSFVVLDEADRMLDLGFEPQINKTSIYI--NPN---RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGS 806 (936)
Q Consensus 740 --------~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~--~~~---~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~ 806 (936)
.+++++++|||||| ++++|...+..|...+ ++. +|+++||||++.++..+...++.++..+.+..
T Consensus 160 ~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~ 237 (844)
T TIGR02621 160 KSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLK 237 (844)
T ss_pred ccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeeccc
Confidence 26889999999999 7889999999999864 332 69999999999988888888887887666544
Q ss_pred CCcccCCceEEEEEEcCcchhHHHHHHHHH-hccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHH---
Q psy7557 807 LDLAATHTVTQKIIILDEDEKKDWLMEFFD-NMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDRE--- 882 (936)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~-~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~--- 882 (936)
.... ...+.+. .......+...+...+. ......+++||||||+..|+.++..|...++ ..+||+|++.+|.
T Consensus 238 ~~l~-a~ki~q~-v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~ 313 (844)
T TIGR02621 238 KRLA-AKKIVKL-VPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLV 313 (844)
T ss_pred cccc-ccceEEE-EecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHH
Confidence 3322 2233343 33333344433333222 1223457899999999999999999998776 8999999999999
Q ss_pred --HHHHHhhc----CC-------CcEEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 883 --IALEDITS----GY-------ARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 883 --~~~~~F~~----g~-------~~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
.+++.|++ |+ ..|||||+++++|||++. ++||++..| .++|+||+||+||+
T Consensus 314 ~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~ 377 (844)
T TIGR02621 314 KKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRF 377 (844)
T ss_pred HHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCC
Confidence 88999987 54 689999999999999986 899998887 79999999999995
No 100
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=3e-42 Score=412.32 Aligned_cols=322 Identities=20% Similarity=0.246 Sum_probs=248.2
Q ss_pred hHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEE
Q psy7557 597 FKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVM 676 (936)
Q Consensus 597 f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil 676 (936)
|++ +++++.+++.+.+.+|. |+|+|.++++.+.+|+|++++||||||||++|.++++..+. .+.++||+
T Consensus 3 ~~~-~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~---------~~~k~v~i 71 (674)
T PRK01172 3 ISD-LGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFL---------AGLKSIYI 71 (674)
T ss_pred Hhh-cCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHH---------hCCcEEEE
Confidence 444 67899999999999995 99999999999999999999999999999999999987763 25689999
Q ss_pred ecCHHHHHHHHHHHHhccCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhc
Q psy7557 677 APTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRML 756 (936)
Q Consensus 677 ~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~ 756 (936)
+|+++||.|+++.++++...+.++...+|+...... ....++|+|+|||++..++.++...++++++||+||||++.
T Consensus 72 ~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~ 148 (674)
T PRK01172 72 VPLRSLAMEKYEELSRLRSLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIG 148 (674)
T ss_pred echHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhcc
Confidence 999999999999999876678888888887655432 22458999999999999998887778999999999999998
Q ss_pred cCCCHHHHHHHhhh---cCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEE-EEEEcCcch-hHHHH
Q psy7557 757 DLGFEPQINKTSIY---INPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQ-KIIILDEDE-KKDWL 831 (936)
Q Consensus 757 ~~~~~~~~~~i~~~---~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~-k~~~l 831 (936)
+.++...++.+... .+++.|++++|||++ +..+++.|+....+.....+... ...+.. ......... ....+
T Consensus 149 d~~rg~~le~ll~~~~~~~~~~riI~lSATl~-n~~~la~wl~~~~~~~~~r~vpl--~~~i~~~~~~~~~~~~~~~~~~ 225 (674)
T PRK01172 149 DEDRGPTLETVLSSARYVNPDARILALSATVS-NANELAQWLNASLIKSNFRPVPL--KLGILYRKRLILDGYERSQVDI 225 (674)
T ss_pred CCCccHHHHHHHHHHHhcCcCCcEEEEeCccC-CHHHHHHHhCCCccCCCCCCCCe--EEEEEecCeeeecccccccccH
Confidence 88877777766543 457899999999996 45677776643322111111100 000000 000111111 11113
Q ss_pred HHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhc-------------------------CCceEEEeCCCCHHHHHHHHH
Q psy7557 832 MEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQ-------------------------YRKSCSLYGDLSQEDREIALE 886 (936)
Q Consensus 832 ~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~-------------------------~~~~~~~h~~l~~~~R~~~~~ 886 (936)
..++......++++||||++++.|+.++..|... ..+++.|||+|++++|..+++
T Consensus 226 ~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~ 305 (674)
T PRK01172 226 NSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEE 305 (674)
T ss_pred HHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHH
Confidence 3334433345689999999999999999888653 135788999999999999999
Q ss_pred HhhcCCCcEEEecccCccCCCCCCCCEEEEccC---------CCChhhhHhhhhhccCC
Q psy7557 887 DITSGYARICVATDVASRGLDVPDLTHVINYDF---------PSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 887 ~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~---------p~s~~~yiqr~GRaGR~ 936 (936)
.|++|.++|||||+++++|+|+|+..+|| +|. |.+..+|.||+|||||.
T Consensus 306 ~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~ 363 (674)
T PRK01172 306 MFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRP 363 (674)
T ss_pred HHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCC
Confidence 99999999999999999999999865555 333 45788999999999994
No 101
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.3e-41 Score=390.54 Aligned_cols=325 Identities=24% Similarity=0.285 Sum_probs=259.6
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHH
Q psy7557 603 HYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTREL 682 (936)
Q Consensus 603 l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~L 682 (936)
++|.+.+.++.. |..|||.|.+|||.+.+|+|++++||||||||+|+.+|++..+.... +.....+-.+|||+|.|+|
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~-~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG-KGKLEDGIYALYISPLKAL 85 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc-CCCCCCceEEEEeCcHHHH
Confidence 678888889888 99999999999999999999999999999999999999998887652 1122456789999999999
Q ss_pred HHHHHHHHHhcc-CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCC--CCCCCceEEEEcccchhccCC
Q psy7557 683 ATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRAS--IDLKAVSFVVLDEADRMLDLG 759 (936)
Q Consensus 683 a~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~--~~~~~i~~lViDEah~l~~~~ 759 (936)
.+.+...+..+. ..|+.+..-+|.++........++.+||+|+|||.|.-++.... -.+.++++||+||.|.+.+..
T Consensus 86 n~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 86 NNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccc
Confidence 999999998874 67888888888888777777788889999999999988776543 258999999999999987544
Q ss_pred CH----HHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCC--CeEEEeCCCCcccCCceEEEEEEcCcc-----hhH
Q psy7557 760 FE----PQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVN--PVKVNVGSLDLAATHTVTQKIIILDED-----EKK 828 (936)
Q Consensus 760 ~~----~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~k~ 828 (936)
.. -.++++....+ +.|.+++|||.. +....++++... +..+..... .......+...... .-.
T Consensus 166 RG~~Lsl~LeRL~~l~~-~~qRIGLSATV~-~~~~varfL~g~~~~~~Iv~~~~----~k~~~i~v~~p~~~~~~~~~~~ 239 (814)
T COG1201 166 RGVQLALSLERLRELAG-DFQRIGLSATVG-PPEEVAKFLVGFGDPCEIVDVSA----AKKLEIKVISPVEDLIYDEELW 239 (814)
T ss_pred cchhhhhhHHHHHhhCc-ccEEEeehhccC-CHHHHHHHhcCCCCceEEEEccc----CCcceEEEEecCCccccccchh
Confidence 33 33455555555 899999999996 666777777655 333332211 11112122111111 112
Q ss_pred HHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcC-CceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCC
Q psy7557 829 DWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQY-RKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLD 907 (936)
Q Consensus 829 ~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~-~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gid 907 (936)
..++..+.........+|||+||+..++.++..|.+.+ ..+..|||.++.+.|..+++.|++|+.+++|||+.++-|||
T Consensus 240 ~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGID 319 (814)
T COG1201 240 AALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGID 319 (814)
T ss_pred HHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccc
Confidence 22333333333344689999999999999999999988 88999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEccCCCChhhhHhhhhhccC
Q psy7557 908 VPDLTHVINYDFPSHIEEYVHRVGRTGE 935 (936)
Q Consensus 908 ip~v~~VI~~d~p~s~~~yiqr~GRaGR 935 (936)
+.++++||||+.|.++..++||+||+|+
T Consensus 320 iG~vdlVIq~~SP~sV~r~lQRiGRsgH 347 (814)
T COG1201 320 IGDIDLVIQLGSPKSVNRFLQRIGRAGH 347 (814)
T ss_pred cCCceEEEEeCCcHHHHHHhHhcccccc
Confidence 9999999999999999999999999996
No 102
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1.4e-39 Score=396.97 Aligned_cols=303 Identities=17% Similarity=0.188 Sum_probs=237.5
Q ss_pred HHHHHHhCCCCCCcHHHHHHHHhhhcC------CcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCH
Q psy7557 607 ILRQLENLSFTTPSPIQAQAWPILMSG------HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTR 680 (936)
Q Consensus 607 ~~~~l~~~g~~~p~~iQ~~ai~~~l~g------~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~ 680 (936)
..+...+++| .||++|.+||+.++++ +|++++|+||||||.+|+.+++..+ ..+++++||+||+
T Consensus 590 ~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~---------~~g~qvlvLvPT~ 659 (1147)
T PRK10689 590 YQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV---------ENHKQVAVLVPTT 659 (1147)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHH---------HcCCeEEEEeCcH
Confidence 3455677899 7999999999999987 8999999999999999998877554 2478999999999
Q ss_pred HHHHHHHHHHHhc-cCCCCEEEEEECCccchHHHHHH---hc-CceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchh
Q psy7557 681 ELATQIEREVNKI-DYKGLKAVCVYGGKELEPQLEKI---RE-GCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRM 755 (936)
Q Consensus 681 ~La~Q~~~~~~~~-~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l 755 (936)
+||.|+++.+++. ...++++..++|+.+...+...+ .+ +++|+||||+.+ +..+.+++++++||||+|++
T Consensus 660 eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL-----~~~v~~~~L~lLVIDEahrf 734 (1147)
T PRK10689 660 LLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL-----QSDVKWKDLGLLIVDEEHRF 734 (1147)
T ss_pred HHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH-----hCCCCHhhCCEEEEechhhc
Confidence 9999999999874 45578888888887766655433 33 489999999643 23456789999999999997
Q ss_pred ccCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHHH
Q psy7557 756 LDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFF 835 (936)
Q Consensus 756 ~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l 835 (936)
|+. . ......+++++|+++||||+++....++...+.++..+...+.. ...+.+.+.......... .++
T Consensus 735 ---G~~-~-~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~---r~~v~~~~~~~~~~~~k~---~il 803 (1147)
T PRK10689 735 ---GVR-H-KERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR---RLAVKTFVREYDSLVVRE---AIL 803 (1147)
T ss_pred ---chh-H-HHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC---CCCceEEEEecCcHHHHH---HHH
Confidence 332 2 23345567899999999999888888888888888877654432 122333332222211111 222
Q ss_pred HhccCCCCcEEEEcCChHHHHHHHHHHHhc--CCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCE
Q psy7557 836 DNMDEERDKVMVFMGRKASVSAMSSDLACQ--YRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTH 913 (936)
Q Consensus 836 ~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~--~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~ 913 (936)
... ..+++++||||++..++.++..|... +.++..+||+|++.+|..++..|++|+++|||||+++++|+|+|++++
T Consensus 804 ~el-~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~ 882 (1147)
T PRK10689 804 REI-LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANT 882 (1147)
T ss_pred HHH-hcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCE
Confidence 222 23578999999999999999999987 678999999999999999999999999999999999999999999999
Q ss_pred EEEccCC-CChhhhHhhhhhccCC
Q psy7557 914 VINYDFP-SHIEEYVHRVGRTGEF 936 (936)
Q Consensus 914 VI~~d~p-~s~~~yiqr~GRaGR~ 936 (936)
||..+.. .+..+|+||+||+||.
T Consensus 883 VIi~~ad~fglaq~~Qr~GRvGR~ 906 (1147)
T PRK10689 883 IIIERADHFGLAQLHQLRGRVGRS 906 (1147)
T ss_pred EEEecCCCCCHHHHHHHhhccCCC
Confidence 9954432 2456799999999995
No 103
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=2.2e-40 Score=404.42 Aligned_cols=304 Identities=22% Similarity=0.295 Sum_probs=228.4
Q ss_pred EEecCCCCcchhchHHHHHHhhcCCCCC----CCCCCCEEEEEcCcHHHHHHHHHHHHh----c-------c--CCCCEE
Q psy7557 118 GIAQTGTGKTFAFLLPALIHTHLQTTPI----SERAGPSVLVMAPTRELATQIEREVNK----I-------D--YKGLKA 180 (936)
Q Consensus 118 ~~apTGsGKT~~~~lp~l~~~~~~~~~~----~~~~~~~~lil~Pt~~La~Q~~~~~~~----~-------~--~~~~~~ 180 (936)
++||||||||++|.+|++..+.....+. ....+.++|||+|+++|+.|+++.++. + + ..++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999998886542110 113468999999999999999998864 1 1 247889
Q ss_pred EEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcC-CcCCCCceEEEEccchhhhcCC----CHHHHHHHHhhcCCCC
Q psy7557 181 VCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRA-SIDLKAVSFVVLDEADRMLDLG----FEPQINKTSIYINPNR 255 (936)
Q Consensus 181 ~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-~~~~~~~~~lViDEah~l~~~~----~~~~~~~i~~~~~~~~ 255 (936)
...+|+.+..++...+++.++|+|+|||+|..++.++ ...++++++|||||+|.|.+.. +...+.++...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 9999999888777777778999999999998887654 3468999999999999998754 3455667766677789
Q ss_pred cEEEEEeccchHHHHHHHHhcC-CCEEEEeCCCCcccCCceEEEEEEeCchhh--------------------HHHH-HH
Q psy7557 256 QTVMTSATWNKDVQRVAKKYMV-NPVKVNVGSLDLAATHTVTQKIIILDEDEK--------------------KDWL-ME 313 (936)
Q Consensus 256 q~~~~SAT~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k--------------------~~~l-~~ 313 (936)
|+|++|||+++ ..++++++.. +|+.+.... . .....+.. ++.+....+ ...+ ..
T Consensus 161 QrIgLSATI~n-~eevA~~L~g~~pv~Iv~~~-~-~r~~~l~v-~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~ 236 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVAAFLGGDRPVTVVNPP-A-MRHPQIRI-VVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETG 236 (1490)
T ss_pred eEEEEEeeCCC-HHHHHHHhcCCCCEEEECCC-C-CcccceEE-EEecCchhhccccccccccccchhhhhhhhHHHHHH
Confidence 99999999986 5666665543 355553221 1 11122221 111111100 0011 12
Q ss_pred HHHhccCCCCcEEEEeCchHHHHHHHHHhhhcC---------------------------------CceeeecCCCCHHH
Q psy7557 314 FFDNMDEERDKVMVFMGRKASVSAMSSDLACQY---------------------------------RKSCSLYGDLSQED 360 (936)
Q Consensus 314 ~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~---------------------------------~~~~~~h~~~~~~~ 360 (936)
++... ....++||||||+..|+.++..|+... ..+..|||+|++++
T Consensus 237 il~~i-~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkee 315 (1490)
T PRK09751 237 ILDEV-LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQ 315 (1490)
T ss_pred HHHHH-hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHH
Confidence 22222 245789999999999999999887542 12567999999999
Q ss_pred HHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccC-CCceeEEEEe
Q psy7557 361 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRA-GKSGESITLM 426 (936)
Q Consensus 361 R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~-g~~g~~~~~~ 426 (936)
|..+++.|++|++++||||+++++|||+|++++||||+.|.++.+|+||+|||||. |..+.++++.
T Consensus 316 R~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p 382 (1490)
T PRK09751 316 RAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFP 382 (1490)
T ss_pred HHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999997 3345555433
No 104
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=2.2e-39 Score=386.89 Aligned_cols=304 Identities=18% Similarity=0.207 Sum_probs=235.3
Q ss_pred HHHHHH-HhCCCCCCcHHHHHHHHhhhcC------CcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEec
Q psy7557 606 EILRQL-ENLSFTTPSPIQAQAWPILMSG------HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAP 678 (936)
Q Consensus 606 ~~~~~l-~~~g~~~p~~iQ~~ai~~~l~g------~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~P 678 (936)
.+.+.+ ..++| .|||+|.+||+.++++ +|.+++||||||||.+|++|++..+. .+++++|++|
T Consensus 439 ~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~---------~g~qvlvLvP 508 (926)
T TIGR00580 439 EWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL---------DGKQVAVLVP 508 (926)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH---------hCCeEEEEeC
Confidence 344444 45799 6999999999999975 79999999999999999999987663 3679999999
Q ss_pred CHHHHHHHHHHHHhc-cCCCCEEEEEECCccchHH---HHHHhcC-ceEEEeCchHHHHHHHcCCCCCCCceEEEEcccc
Q psy7557 679 TRELATQIEREVNKI-DYKGLKAVCVYGGKELEPQ---LEKIREG-CHILIATPGRLNDFVSRASIDLKAVSFVVLDEAD 753 (936)
Q Consensus 679 t~~La~Q~~~~~~~~-~~~~~~~~~~~gg~~~~~~---~~~l~~~-~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah 753 (936)
|++||.|+++.++++ ...++++..++|+...... ...+..| ++||||||..+ +..+.+++++++||||+|
T Consensus 509 T~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEah 583 (926)
T TIGR00580 509 TTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQ 583 (926)
T ss_pred cHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeeccc
Confidence 999999999999985 4557888888887664433 3344454 89999999432 345678999999999999
Q ss_pred hhccCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHH
Q psy7557 754 RMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLME 833 (936)
Q Consensus 754 ~l~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 833 (936)
++. ......+..+++++|+++||||+++...........++..+...+.. ...+...+..... ..+..
T Consensus 584 rfg-----v~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~---R~~V~t~v~~~~~----~~i~~ 651 (926)
T TIGR00580 584 RFG-----VKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED---RLPVRTFVMEYDP----ELVRE 651 (926)
T ss_pred ccc-----hhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC---ccceEEEEEecCH----HHHHH
Confidence 852 22334445566789999999998777666665566677666544322 1223333322221 11222
Q ss_pred HHHhccCCCCcEEEEcCChHHHHHHHHHHHhc--CCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCC
Q psy7557 834 FFDNMDEERDKVMVFMGRKASVSAMSSDLACQ--YRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDL 911 (936)
Q Consensus 834 ~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~--~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v 911 (936)
.+......+++++|||+++..++.++..|... +..+..+||+|++++|..+++.|++|+++|||||+++++|+|+|++
T Consensus 652 ~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v 731 (926)
T TIGR00580 652 AIRRELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNA 731 (926)
T ss_pred HHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccC
Confidence 22211234578999999999999999999885 5789999999999999999999999999999999999999999999
Q ss_pred CEEEEccCCC-ChhhhHhhhhhccCC
Q psy7557 912 THVINYDFPS-HIEEYVHRVGRTGEF 936 (936)
Q Consensus 912 ~~VI~~d~p~-s~~~yiqr~GRaGR~ 936 (936)
++||+++.|. +..+|+||+||+||.
T Consensus 732 ~~VIi~~a~~~gls~l~Qr~GRvGR~ 757 (926)
T TIGR00580 732 NTIIIERADKFGLAQLYQLRGRVGRS 757 (926)
T ss_pred CEEEEecCCCCCHHHHHHHhcCCCCC
Confidence 9999999975 678999999999995
No 105
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=3.7e-40 Score=385.34 Aligned_cols=334 Identities=22% Similarity=0.291 Sum_probs=269.2
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHHHHHH-HhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHH
Q psy7557 83 HYPEILRQLENLSFTTPSPIQAQAWPI-LMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRE 161 (936)
Q Consensus 83 ~~~~l~~~l~~~g~~~~~~~Q~~ai~~-~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~ 161 (936)
+.+.+.+.+...|+.++.|-|+.++.. +.+|+|+++|+|||||||+++++.++..+.. .+.+++|+||+++
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~--------~~~k~vYivPlkA 87 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLE--------GGGKVVYIVPLKA 87 (766)
T ss_pred ccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHh--------cCCcEEEEeChHH
Confidence 556677778888888888777777766 4567999999999999999999999988753 2578999999999
Q ss_pred HHHHHHHHHHhccCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCH
Q psy7557 162 LATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFE 241 (936)
Q Consensus 162 La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~ 241 (936)
||.|++++++++...|+++...+|+.+..... ..+++|+|+|||+|-..+.+....+..+++|||||+|.+.+...+
T Consensus 88 La~Ek~~~~~~~~~~GirV~~~TgD~~~~~~~---l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG 164 (766)
T COG1204 88 LAEEKYEEFSRLEELGIRVGISTGDYDLDDER---LARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRG 164 (766)
T ss_pred HHHHHHHHhhhHHhcCCEEEEecCCcccchhh---hccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccC
Confidence 99999999998888999999999998866532 245899999999997666666667889999999999999888777
Q ss_pred HHHHHHHhhcC---CCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchh------hHHHHH
Q psy7557 242 PQINKTSIYIN---PNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDE------KKDWLM 312 (936)
Q Consensus 242 ~~~~~i~~~~~---~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------k~~~l~ 312 (936)
+.++.+....+ ...|++++|||+| +..+++.+.-.++....+.+..........+.+....... ..+..+
T Consensus 165 ~~lE~iv~r~~~~~~~~rivgLSATlp-N~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~ 243 (766)
T COG1204 165 PVLESIVARMRRLNELIRIVGLSATLP-NAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLAL 243 (766)
T ss_pred ceehhHHHHHHhhCcceEEEEEeeecC-CHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHH
Confidence 77777666553 3479999999998 7788999888777755555555555555566665555333 233444
Q ss_pred HHHHhccCCCCcEEEEeCchHHHHHHHHHhhhc-------------------------------------CCceeeecCC
Q psy7557 313 EFFDNMDEERDKVMVFMGRKASVSAMSSDLACQ-------------------------------------YRKSCSLYGD 355 (936)
Q Consensus 313 ~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~h~~ 355 (936)
..+......+++++|||++++.+...|+.|... -.++..||+|
T Consensus 244 ~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAG 323 (766)
T COG1204 244 ELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAG 323 (766)
T ss_pred HHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccC
Confidence 444444577899999999999999998888720 1245669999
Q ss_pred CCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEE----Eec-----CCCCccccccCCCCcccCCCc--eeEEE
Q psy7557 356 LSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVI----NYD-----FPSHIEEYVHRVGRTGRAGKS--GESIT 424 (936)
Q Consensus 356 ~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI----~~d-----~p~s~~~y~qr~GRagR~g~~--g~~~~ 424 (936)
|+.++|..+.+.|+.|+++|||||+++++|+|+|+-++|| .|| .+-++.+|+||+|||||.|-. |.+++
T Consensus 324 L~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i 403 (766)
T COG1204 324 LPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAII 403 (766)
T ss_pred CCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEE
Confidence 9999999999999999999999999999999999988888 577 456789999999999999866 67777
Q ss_pred Eecc
Q psy7557 425 LMTR 428 (936)
Q Consensus 425 ~~~~ 428 (936)
+.+.
T Consensus 404 ~~~~ 407 (766)
T COG1204 404 LATS 407 (766)
T ss_pred EecC
Confidence 7643
No 106
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=9.4e-40 Score=398.97 Aligned_cols=294 Identities=23% Similarity=0.291 Sum_probs=223.1
Q ss_pred EEecCCCCcchhhHHHHHHHhhccCCC----CccCCCCEEEEEecCHHHHHHHHHHHHh----c-------c--CCCCEE
Q psy7557 638 GIAQTGTGKTFAFLLPALIHTHLQTTP----ISERAGPSVLVMAPTRELATQIEREVNK----I-------D--YKGLKA 700 (936)
Q Consensus 638 ~~apTGsGKTl~~~lp~l~~~~~~~~~----~~~~~~~~~lil~Pt~~La~Q~~~~~~~----~-------~--~~~~~~ 700 (936)
++||||||||+||.+|++..+..+..+ .....+.++|||+|+++|+.|+.+.++. + + ..++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999888654211 0113468999999999999999998864 1 1 246888
Q ss_pred EEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcC-CCCCCCceEEEEcccchhccCC----CHHHHHHHhhhcCCCc
Q psy7557 701 VCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRA-SIDLKAVSFVVLDEADRMLDLG----FEPQINKTSIYINPNR 775 (936)
Q Consensus 701 ~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~-~~~~~~i~~lViDEah~l~~~~----~~~~~~~i~~~~~~~~ 775 (936)
...+|+.+...+...+++.+||+|+|||+|..++.+. ...++++++|||||+|.|.+.. +...+.++...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 9999998888777777778999999999999887654 3468999999999999998653 3455666766677789
Q ss_pred eEEEEEecCChHHHHHHHHhcC-CCeEEEeCCCCcccCCceEEEEEEcCcchh--------------------HHHH-HH
Q psy7557 776 QTVMTSATWNKDVQRVAKKYMV-NPVKVNVGSLDLAATHTVTQKIIILDEDEK--------------------KDWL-ME 833 (936)
Q Consensus 776 q~v~~SAT~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k--------------------~~~l-~~ 833 (936)
|+|++|||+++ ...+++++.. .|+.+..... .....+... .......+ ...+ ..
T Consensus 161 QrIgLSATI~n-~eevA~~L~g~~pv~Iv~~~~--~r~~~l~v~-vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~ 236 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVAAFLGGDRPVTVVNPPA--MRHPQIRIV-VPVANMDDVSSVASGTGEDSHAGREGSIWPYIETG 236 (1490)
T ss_pred eEEEEEeeCCC-HHHHHHHhcCCCCEEEECCCC--CcccceEEE-EecCchhhccccccccccccchhhhhhhhHHHHHH
Confidence 99999999975 5677766653 3555532211 111122211 11111000 0011 12
Q ss_pred HHHhccCCCCcEEEEcCChHHHHHHHHHHHhcC---------------------------------CceEEEeCCCCHHH
Q psy7557 834 FFDNMDEERDKVMVFMGRKASVSAMSSDLACQY---------------------------------RKSCSLYGDLSQED 880 (936)
Q Consensus 834 ~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~---------------------------------~~~~~~h~~l~~~~ 880 (936)
++... ....++||||||++.|+.++..|+... ..+..|||+|++++
T Consensus 237 il~~i-~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkee 315 (1490)
T PRK09751 237 ILDEV-LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQ 315 (1490)
T ss_pred HHHHH-hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHH
Confidence 23222 235789999999999999999997642 12568999999999
Q ss_pred HHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 881 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 881 R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
|..+++.|++|++++||||+++++|||++++++||||+.|.++.+|+||+|||||.
T Consensus 316 R~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 316 RAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999983
No 107
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=2.3e-39 Score=373.81 Aligned_cols=310 Identities=17% Similarity=0.213 Sum_probs=233.8
Q ss_pred HHHHHHHHHHhcCCcEEEEecCCCCcchh---------chHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHH
Q psy7557 101 PIQAQAWPILMSGHDMIGIAQTGTGKTFA---------FLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVN 171 (936)
Q Consensus 101 ~~Q~~ai~~~~~g~d~l~~apTGsGKT~~---------~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~ 171 (936)
.+|.++++.+++|+|++++|+||||||.+ |++|.+..+.... ....+++++|++||||||.|+...+.
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~---~~~~~~~ilvt~PrreLa~qi~~~i~ 243 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID---PNFIERPIVLSLPRVALVRLHSITLL 243 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc---cccCCcEEEEECcHHHHHHHHHHHHH
Confidence 58999999999999999999999999987 4444443331100 01345689999999999999999987
Q ss_pred hc-cC---CCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHH
Q psy7557 172 KI-DY---KGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT 247 (936)
Q Consensus 172 ~~-~~---~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i 247 (936)
+. +. .+.++...+||... .+......+.+|+|+|++.. ...++++++|||||||.+...+ ..+..+
T Consensus 244 ~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~--DllL~l 313 (675)
T PHA02653 244 KSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG--DIIIAV 313 (675)
T ss_pred HHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccch--hHHHHH
Confidence 63 22 36778889999873 22222333679999998631 1247899999999999987766 334444
Q ss_pred Hhhc-CCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeC----------chhhHHHHHHHHH
Q psy7557 248 SIYI-NPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD----------EDEKKDWLMEFFD 316 (936)
Q Consensus 248 ~~~~-~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----------~~~k~~~l~~~l~ 316 (936)
+... +..+|+++||||++.++..+ ..++.+|..+.+... ....+.+.+.... ...+. .+...+.
T Consensus 314 lk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr---t~~pV~~~yi~~~~~~~~~~~y~~~~k~-~~l~~L~ 388 (675)
T PHA02653 314 ARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG---TLFPISEVYVKNKYNPKNKRAYIEEEKK-NIVTALK 388 (675)
T ss_pred HHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC---cCCCeEEEEeecCcccccchhhhHHHHH-HHHHHHH
Confidence 4333 33469999999999888776 578888888876532 2245555554322 11222 2233333
Q ss_pred hc-cCCCCcEEEEeCchHHHHHHHHHhhhc--CCceeeecCCCCHHHHHHHHHHh-hcCCcEEEEEecccccCCCCCCCc
Q psy7557 317 NM-DEERDKVMVFMGRKASVSAMSSDLACQ--YRKSCSLYGDLSQEDREIALEDI-TSGYARICVATDVASRGLDVPDLT 392 (936)
Q Consensus 317 ~~-~~~~~~~iVF~~~~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~R~~~~~~f-~~g~~~vLvaT~~~~~GiDip~v~ 392 (936)
.. ...++++||||+++.+++.+++.|... ++.+..+||+|++. +++++.| ++|+.+||||||+++||||+|+|+
T Consensus 389 ~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~ 466 (675)
T PHA02653 389 KYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNAT 466 (675)
T ss_pred HhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCee
Confidence 22 123578999999999999999999877 68899999999985 5677777 789999999999999999999999
Q ss_pred EEEEec---CCC---------CccccccCCCCcccCCCceeEEEEecccCh
Q psy7557 393 HVINYD---FPS---------HIEEYVHRVGRTGRAGKSGESITLMTRKDW 431 (936)
Q Consensus 393 ~VI~~d---~p~---------s~~~y~qr~GRagR~g~~g~~~~~~~~~~~ 431 (936)
+||++| .|. |.++|+||+|||||. ++|.|+.|+++++.
T Consensus 467 ~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 467 HVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred EEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 999999 565 778999999999999 78999999998874
No 108
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=5.9e-39 Score=392.29 Aligned_cols=289 Identities=24% Similarity=0.318 Sum_probs=228.8
Q ss_pred HHHHHHh-CCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHH
Q psy7557 87 ILRQLEN-LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQ 165 (936)
Q Consensus 87 l~~~l~~-~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q 165 (936)
..+.+++ .|+ +|+++|..++|.++.|+|++++||||||||. |.+|+...+. ..+++++||+||++||.|
T Consensus 69 ~~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~--------~~g~~alIL~PTreLa~Q 138 (1176)
T PRK09401 69 FEKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLA--------KKGKKSYIIFPTRLLVEQ 138 (1176)
T ss_pred HHHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHH--------hcCCeEEEEeccHHHHHH
Confidence 3445544 577 8999999999999999999999999999996 5555554432 247899999999999999
Q ss_pred HHHHHHhcc-CCCCEEEEEeCCccc-----hHHHHHhhc-CCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhc-
Q psy7557 166 IEREVNKID-YKGLKAVCVYGGKEI-----EPQLEKIRE-GCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLD- 237 (936)
Q Consensus 166 ~~~~~~~~~-~~~~~~~~~~gg~~~-----~~~~~~~~~-~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~- 237 (936)
+++.++++. ..++.+..++|+... ..+...+.. +++|+|+||++|.+.+. .+...+++++|+||||+|++
T Consensus 139 i~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~ 216 (1176)
T PRK09401 139 VVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKS 216 (1176)
T ss_pred HHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhc
Confidence 999999975 457777777776542 333444554 48999999999998876 45566799999999999996
Q ss_pred ----------CCCH-HHHHHHHhhcCC------------------------CCcEEEEEeccchH-HHHHHHHhcCCCEE
Q psy7557 238 ----------LGFE-PQINKTSIYINP------------------------NRQTVMTSATWNKD-VQRVAKKYMVNPVK 281 (936)
Q Consensus 238 ----------~~~~-~~~~~i~~~~~~------------------------~~q~~~~SAT~~~~-~~~~~~~~~~~~~~ 281 (936)
+||. ..+..++..++. ..|+++||||+++. +.. .++.++..
T Consensus 217 ~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~ 293 (1176)
T PRK09401 217 SKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLG 293 (1176)
T ss_pred ccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccce
Confidence 6784 677777766654 68999999999864 332 23445555
Q ss_pred EEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCchHH---HHHHHHHhhhcCCceeeecCCCCH
Q psy7557 282 VNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKAS---VSAMSSDLACQYRKSCSLYGDLSQ 358 (936)
Q Consensus 282 i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~---~~~l~~~L~~~~~~~~~~h~~~~~ 358 (936)
+.++.... ...++.+.++.+. ++...+..++..+ +.++||||+++.. ++.+++.|...|+++..+||+|
T Consensus 294 ~~v~~~~~-~~rnI~~~yi~~~--~k~~~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-- 365 (1176)
T PRK09401 294 FEVGSPVF-YLRNIVDSYIVDE--DSVEKLVELVKRL---GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-- 365 (1176)
T ss_pred EEecCccc-ccCCceEEEEEcc--cHHHHHHHHHHhc---CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH--
Confidence 66655432 3456777776555 5667778877765 3589999999877 9999999999999999999999
Q ss_pred HHHHHHHHHhhcCCcEEEEE----ecccccCCCCCC-CcEEEEecCCC
Q psy7557 359 EDREIALEDITSGYARICVA----TDVASRGLDVPD-LTHVINYDFPS 401 (936)
Q Consensus 359 ~~R~~~~~~f~~g~~~vLva----T~~~~~GiDip~-v~~VI~~d~p~ 401 (936)
...+++|++|+++|||| ||+++||||+|+ |++|||||+|.
T Consensus 366 ---~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 366 ---ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred ---HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 23459999999999999 699999999999 89999999996
No 109
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.6e-39 Score=360.28 Aligned_cols=301 Identities=22% Similarity=0.346 Sum_probs=236.0
Q ss_pred CCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc
Q psy7557 614 LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693 (936)
Q Consensus 614 ~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 693 (936)
+||..++|-|.++|..+++|+|+++..|||+||++||++|++.. ...+|||+|..+| +.+++..+
T Consensus 13 fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~------------~G~TLVVSPLiSL---M~DQV~~l 77 (590)
T COG0514 13 FGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL------------EGLTLVVSPLISL---MKDQVDQL 77 (590)
T ss_pred hCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc------------CCCEEEECchHHH---HHHHHHHH
Confidence 68999999999999999999999999999999999999999842 2378999999999 55555555
Q ss_pred cCCCCEEEEEECCccchHHH---HHHhcC-ceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCC--CHHHHHHH
Q psy7557 694 DYKGLKAVCVYGGKELEPQL---EKIREG-CHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLG--FEPQINKT 767 (936)
Q Consensus 694 ~~~~~~~~~~~gg~~~~~~~---~~l~~~-~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~--~~~~~~~i 767 (936)
...|+.+.++.+..+.+... ..+..| .+++.-+||++..--....+.-.++.++|||||||+.+|| |++.+..+
T Consensus 78 ~~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~l 157 (590)
T COG0514 78 EAAGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRL 157 (590)
T ss_pred HHcCceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHH
Confidence 55688999888876655443 334444 7999999999854322222235568899999999999998 99999887
Q ss_pred hhhcC--CCceEEEEEecCChHHHHHHHHhc--CCCeEEEeCCCCcccCCceEEEEEEcC-cchhHHHHHHHHHhccCCC
Q psy7557 768 SIYIN--PNRQTVMTSATWNKDVQRVAKKYM--VNPVKVNVGSLDLAATHTVTQKIIILD-EDEKKDWLMEFFDNMDEER 842 (936)
Q Consensus 768 ~~~~~--~~~q~v~~SAT~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~~~ 842 (936)
..... ++.+++++|||.++.+...+...+ ..+..+....... ++...+.... ...+..++.+ ......
T Consensus 158 g~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRp----Ni~~~v~~~~~~~~q~~fi~~---~~~~~~ 230 (590)
T COG0514 158 GRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRP----NLALKVVEKGEPSDQLAFLAT---VLPQLS 230 (590)
T ss_pred HHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCc----hhhhhhhhcccHHHHHHHHHh---hccccC
Confidence 66543 488999999999998887555443 3443333332211 1111111111 1222222222 223456
Q ss_pred CcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEEccCCCC
Q psy7557 843 DKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSH 922 (936)
Q Consensus 843 ~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~p~s 922 (936)
+..||||.|++.++.++..|...|+.+..+||||+.++|+.+.+.|..++++|+|||.++++|||.|||++|||||+|.|
T Consensus 231 ~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s 310 (590)
T COG0514 231 KSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGS 310 (590)
T ss_pred CCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHhhhhhccCC
Q psy7557 923 IEEYVHRVGRTGEF 936 (936)
Q Consensus 923 ~~~yiqr~GRaGR~ 936 (936)
+++|.|-+|||||.
T Consensus 311 ~EsYyQE~GRAGRD 324 (590)
T COG0514 311 IESYYQETGRAGRD 324 (590)
T ss_pred HHHHHHHHhhccCC
Confidence 99999999999994
No 110
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=3.3e-39 Score=401.97 Aligned_cols=330 Identities=18% Similarity=0.202 Sum_probs=260.3
Q ss_pred HHHHHHHHh-CCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHH
Q psy7557 85 PEILRQLEN-LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELA 163 (936)
Q Consensus 85 ~~l~~~l~~-~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La 163 (936)
.++.+.+++ .|| +|+++|.+++|.+++|+|++++||||||||++++++++... ..++++|||+||++|+
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~---------~~g~~aLVl~PTreLa 135 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA---------LKGKKCYIILPTTLLV 135 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH---------hcCCeEEEEECHHHHH
Confidence 445666766 899 79999999999999999999999999999997666655432 2467899999999999
Q ss_pred HHHHHHHHhccC---CCCEEEEEeCCccchHHH---HHhhcC-CcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhh
Q psy7557 164 TQIEREVNKIDY---KGLKAVCVYGGKEIEPQL---EKIREG-CHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRML 236 (936)
Q Consensus 164 ~Q~~~~~~~~~~---~~~~~~~~~gg~~~~~~~---~~~~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~ 236 (936)
.|+++.++.+.. .++++..++||.+..++. ..+.++ ++|+|+||++|.+.+... . ..+++++|+||||+|+
T Consensus 136 ~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD~ml 213 (1638)
T PRK14701 136 KQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVDAFL 213 (1638)
T ss_pred HHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECceecc
Confidence 999999999742 357778888988766553 345555 899999999998876542 1 2679999999999998
Q ss_pred c-----------CCCHHHHHH----HHh----------------------hcCCCCc-EEEEEeccchHHHHHHHHhcCC
Q psy7557 237 D-----------LGFEPQINK----TSI----------------------YINPNRQ-TVMTSATWNKDVQRVAKKYMVN 278 (936)
Q Consensus 237 ~-----------~~~~~~~~~----i~~----------------------~~~~~~q-~~~~SAT~~~~~~~~~~~~~~~ 278 (936)
+ +||.+++.. ++. .+++.+| ++++|||+++.. ....++.+
T Consensus 214 ~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~--~~~~l~~~ 291 (1638)
T PRK14701 214 KASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKG--DRVKLYRE 291 (1638)
T ss_pred ccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchh--HHHHHhhc
Confidence 6 588888764 321 2244556 577999998642 12234567
Q ss_pred CEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCchHH---HHHHHHHhhhcCCceeeecCC
Q psy7557 279 PVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKAS---VSAMSSDLACQYRKSCSLYGD 355 (936)
Q Consensus 279 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~---~~~l~~~L~~~~~~~~~~h~~ 355 (936)
+..+.++... ....++.+.++.++...+ ..+..++... +.++||||++++. |+.+++.|...|+++..+||+
T Consensus 292 ~l~f~v~~~~-~~lr~i~~~yi~~~~~~k-~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~ 366 (1638)
T PRK14701 292 LLGFEVGSGR-SALRNIVDVYLNPEKIIK-EHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK 366 (1638)
T ss_pred CeEEEecCCC-CCCCCcEEEEEECCHHHH-HHHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch
Confidence 7777776654 334567777766655544 5677777665 4689999999876 589999999999999999995
Q ss_pred CCHHHHHHHHHHhhcCCcEEEEEe----cccccCCCCCC-CcEEEEecCCC---CccccccCC-------------CCcc
Q psy7557 356 LSQEDREIALEDITSGYARICVAT----DVASRGLDVPD-LTHVINYDFPS---HIEEYVHRV-------------GRTG 414 (936)
Q Consensus 356 ~~~~~R~~~~~~f~~g~~~vLvaT----~~~~~GiDip~-v~~VI~~d~p~---s~~~y~qr~-------------GRag 414 (936)
|..++++|++|+++||||| ++++||||+|+ |++|||||+|+ +++.|.|.. ||+|
T Consensus 367 -----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~ 441 (1638)
T PRK14701 367 -----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEEL 441 (1638)
T ss_pred -----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhc
Confidence 8899999999999999999 58999999999 99999999999 999888877 9999
Q ss_pred cCCCceeEEEEecccChhhHHhHH
Q psy7557 415 RAGKSGESITLMTRKDWSHAHEII 438 (936)
Q Consensus 415 R~g~~g~~~~~~~~~~~~~~~~l~ 438 (936)
|.|..+.+++.+...+...++.++
T Consensus 442 ~~g~~~~~~~~~~~~~~~~~~~~l 465 (1638)
T PRK14701 442 KEGIPIEGVLDVFPEDVEFLRSIL 465 (1638)
T ss_pred ccCCcchhHHHhHHHHHHHHHHHh
Confidence 999998888666556555555444
No 111
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=2.6e-38 Score=374.45 Aligned_cols=303 Identities=20% Similarity=0.226 Sum_probs=227.8
Q ss_pred HHHHHhCCCCCCcHHHHHHHHhhhcC------CcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHH
Q psy7557 608 LRQLENLSFTTPSPIQAQAWPILMSG------HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRE 681 (936)
Q Consensus 608 ~~~l~~~g~~~p~~iQ~~ai~~~l~g------~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~ 681 (936)
.+....++| .||++|.+|++.+.++ .|.+++||||||||++|++|++..+ ..|.+++|++||++
T Consensus 252 ~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~---------~~g~q~lilaPT~~ 321 (681)
T PRK10917 252 KKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAI---------EAGYQAALMAPTEI 321 (681)
T ss_pred HHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHH---------HcCCeEEEEeccHH
Confidence 445567899 7999999999999876 4899999999999999999998766 34789999999999
Q ss_pred HHHHHHHHHHhcc-CCCCEEEEEECCccchH---HHHHHhcC-ceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhc
Q psy7557 682 LATQIEREVNKID-YKGLKAVCVYGGKELEP---QLEKIREG-CHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRML 756 (936)
Q Consensus 682 La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~---~~~~l~~~-~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~ 756 (936)
||.|+++.++++. ..++++..++|+..... ....+.+| ++|+||||+.+.+ ...+++++++||||+|++.
T Consensus 322 LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg 396 (681)
T PRK10917 322 LAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFG 396 (681)
T ss_pred HHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhh
Confidence 9999999999874 45799999999987533 33445554 8999999987743 4468899999999999863
Q ss_pred cCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHHHH
Q psy7557 757 DLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFD 836 (936)
Q Consensus 757 ~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~ 836 (936)
.. . ...+.......++++||||+.+....+......++..+...+. ....+...+. ... +...+...+.
T Consensus 397 ~~-q----r~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~---~r~~i~~~~~--~~~-~~~~~~~~i~ 465 (681)
T PRK10917 397 VE-Q----RLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPP---GRKPITTVVI--PDS-RRDEVYERIR 465 (681)
T ss_pred HH-H----HHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCC---CCCCcEEEEe--Ccc-cHHHHHHHHH
Confidence 22 1 2222223456899999999876554443322223222221111 1122333222 222 2233334444
Q ss_pred hccCCCCcEEEEcCCh--------HHHHHHHHHHHhc--CCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCC
Q psy7557 837 NMDEERDKVMVFMGRK--------ASVSAMSSDLACQ--YRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGL 906 (936)
Q Consensus 837 ~~~~~~~~~iIF~~s~--------~~~~~l~~~L~~~--~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gi 906 (936)
.....+.+++|||+.. ..+..++..|... +..+..+||+|++++|..+++.|++|+++|||||+++++|+
T Consensus 466 ~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~Gi 545 (681)
T PRK10917 466 EEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGV 545 (681)
T ss_pred HHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCc
Confidence 3335567999999954 4566778888765 35899999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEccCCC-ChhhhHhhhhhccCC
Q psy7557 907 DVPDLTHVINYDFPS-HIEEYVHRVGRTGEF 936 (936)
Q Consensus 907 dip~v~~VI~~d~p~-s~~~yiqr~GRaGR~ 936 (936)
|+|++++||+++.|. ....|.||+||+||.
T Consensus 546 Dip~v~~VIi~~~~r~gls~lhQ~~GRvGR~ 576 (681)
T PRK10917 546 DVPNATVMVIENAERFGLAQLHQLRGRVGRG 576 (681)
T ss_pred ccCCCcEEEEeCCCCCCHHHHHHHhhcccCC
Confidence 999999999999997 578888999999995
No 112
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2.3e-38 Score=358.59 Aligned_cols=319 Identities=22% Similarity=0.230 Sum_probs=252.8
Q ss_pred hCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHh
Q psy7557 93 NLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK 172 (936)
Q Consensus 93 ~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 172 (936)
.+|. .|+|+|..++|.++.|+ |+.+.||+|||++|.+|++... ..|+.++|++||++||.|.++.+..
T Consensus 99 ~lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~a---------l~G~~v~VvTptreLA~qdae~~~~ 166 (656)
T PRK12898 99 VLGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAA---------LAGLPVHVITVNDYLAERDAELMRP 166 (656)
T ss_pred HhCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHh---------hcCCeEEEEcCcHHHHHHHHHHHHH
Confidence 3566 89999999999999999 9999999999999999999765 3478999999999999999999999
Q ss_pred c-cCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchh-HHHHHcCC-------------------------cCCCCce
Q psy7557 173 I-DYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRL-NDFVSRAS-------------------------IDLKAVS 225 (936)
Q Consensus 173 ~-~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~-------------------------~~~~~~~ 225 (936)
+ ...|+++.+++||.+. +..+...++||+|+|...+ .|.|..+. .....+.
T Consensus 167 l~~~lGlsv~~i~gg~~~--~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~ 244 (656)
T PRK12898 167 LYEALGLTVGCVVEDQSP--DERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLH 244 (656)
T ss_pred HHhhcCCEEEEEeCCCCH--HHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccc
Confidence 5 5679999999999753 3455566799999999987 45543321 1135578
Q ss_pred EEEEccchhhh-cCC-----------------CHH--------------------------------HHHHHHhh-----
Q psy7557 226 FVVLDEADRML-DLG-----------------FEP--------------------------------QINKTSIY----- 250 (936)
Q Consensus 226 ~lViDEah~l~-~~~-----------------~~~--------------------------------~~~~i~~~----- 250 (936)
+.||||+|.++ |.. +.. .++.++..
T Consensus 245 ~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~ 324 (656)
T PRK12898 245 FAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAW 324 (656)
T ss_pred eeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhc
Confidence 99999999765 100 000 00000000
Q ss_pred -------------c------CCC---------------------------------------------------------
Q psy7557 251 -------------I------NPN--------------------------------------------------------- 254 (936)
Q Consensus 251 -------------~------~~~--------------------------------------------------------- 254 (936)
+ ..+
T Consensus 325 ~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~ 404 (656)
T PRK12898 325 RGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRF 404 (656)
T ss_pred ccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHH
Confidence 0 000
Q ss_pred ----CcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeC
Q psy7557 255 ----RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMG 330 (936)
Q Consensus 255 ----~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~ 330 (936)
..+.+||||.+....++...|..+++.|...... .....+.++.++..+|...+.+.+......+.++||||+
T Consensus 405 Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~---~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~ 481 (656)
T PRK12898 405 FRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS---QRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTR 481 (656)
T ss_pred HHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc---cceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 0567999999988888999999898777655433 222344566778888999999988876555678999999
Q ss_pred chHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCC---CCc-----EEEEecCCCC
Q psy7557 331 RKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVP---DLT-----HVINYDFPSH 402 (936)
Q Consensus 331 ~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip---~v~-----~VI~~d~p~s 402 (936)
|+..++.++..|...++++..+||++++ |+..+..|+.+...|+||||+++||+||+ +|. +||+|++|.|
T Consensus 482 t~~~se~L~~~L~~~gi~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s 559 (656)
T PRK12898 482 SVAASERLSALLREAGLPHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDS 559 (656)
T ss_pred cHHHHHHHHHHHHHCCCCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCC
Confidence 9999999999999999999999998654 44555556666667999999999999999 676 9999999999
Q ss_pred ccccccCCCCcccCCCceeEEEEecccC
Q psy7557 403 IEEYVHRVGRTGRAGKSGESITLMTRKD 430 (936)
Q Consensus 403 ~~~y~qr~GRagR~g~~g~~~~~~~~~~ 430 (936)
...|+||+|||||.|.+|.+++|++..|
T Consensus 560 ~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 560 ARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred HHHHHHhcccccCCCCCeEEEEEechhH
Confidence 9999999999999999999999999876
No 113
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=5.3e-39 Score=339.15 Aligned_cols=334 Identities=20% Similarity=0.272 Sum_probs=272.2
Q ss_pred hcCCHHHHHHHHhCCCCCCcHHHHHHHHH-HhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCc
Q psy7557 81 FQHYPEILRQLENLSFTTPSPIQAQAWPI-LMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPT 159 (936)
Q Consensus 81 ~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~-~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt 159 (936)
+.+++.+.+.|+..|++++.|+|.-|+.. ++.|+|.+++++|+||||++.-++-+..++ ..|.+.||++|.
T Consensus 199 Ldipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l--------~~g~KmlfLvPL 270 (830)
T COG1202 199 LDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLL--------SGGKKMLFLVPL 270 (830)
T ss_pred cCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHH--------hCCCeEEEEehh
Confidence 56888999999999999999999999988 569999999999999999998887776654 347799999999
Q ss_pred HHHHHHHHHHHHh-ccCCCCEEEEEeCCccchHHH----HHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchh
Q psy7557 160 RELATQIEREVNK-IDYKGLKAVCVYGGKEIEPQL----EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADR 234 (936)
Q Consensus 160 ~~La~Q~~~~~~~-~~~~~~~~~~~~gg~~~~~~~----~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~ 234 (936)
.+||+|-++.|+. |...++++..-.|-....... .......||||+|.+-+-.++..+ ..+.++..+||||+|.
T Consensus 271 VALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiHt 349 (830)
T COG1202 271 VALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIHT 349 (830)
T ss_pred HHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeeeee
Confidence 9999999999987 788899988777754333221 112224799999999995555444 7799999999999999
Q ss_pred hhcCCCHHHHHHHH---hhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeC-chhhHHH
Q psy7557 235 MLDLGFEPQINKTS---IYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD-EDEKKDW 310 (936)
Q Consensus 235 l~~~~~~~~~~~i~---~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~k~~~ 310 (936)
+-+...++.+..+. .++-++.|++.+|||.. +...+++.+..+++... ..+.++..+++++. ..+|.+.
T Consensus 350 L~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVg-Np~elA~~l~a~lV~y~------~RPVplErHlvf~~~e~eK~~i 422 (830)
T COG1202 350 LEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVG-NPEELAKKLGAKLVLYD------ERPVPLERHLVFARNESEKWDI 422 (830)
T ss_pred ccchhcccchhhHHHHHHHhCCCCeEEEEEeecC-ChHHHHHHhCCeeEeec------CCCCChhHeeeeecCchHHHHH
Confidence 88766555555443 34457899999999997 56788888877776654 23455666677776 6778777
Q ss_pred HHHHHHhc------cCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEeccccc
Q psy7557 311 LMEFFDNM------DEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASR 384 (936)
Q Consensus 311 l~~~l~~~------~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~ 384 (936)
+..+.+.- ....+++|||++|++.|..+|..|...|+++..||+||+..+|..++..|.++.+.++|+|.+++.
T Consensus 423 i~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~A 502 (830)
T COG1202 423 IARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAA 502 (830)
T ss_pred HHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhc
Confidence 77666532 245789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEE---EecCC-CCccccccCCCCcccCCCc--eeEEEEecccC
Q psy7557 385 GLDVPDLTHVI---NYDFP-SHIEEYVHRVGRTGRAGKS--GESITLMTRKD 430 (936)
Q Consensus 385 GiDip~v~~VI---~~d~p-~s~~~y~qr~GRagR~g~~--g~~~~~~~~~~ 430 (936)
|+|+|+-.+|+ -++.- -|+.+|.||.|||||.+.+ |..++++.+..
T Consensus 503 GVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~ 554 (830)
T COG1202 503 GVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGK 554 (830)
T ss_pred CCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCCh
Confidence 99999766655 22332 2889999999999999765 88888887764
No 114
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=7.6e-38 Score=382.60 Aligned_cols=302 Identities=23% Similarity=0.288 Sum_probs=237.1
Q ss_pred HHHHHHh-CCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHH
Q psy7557 607 ILRQLEN-LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQ 685 (936)
Q Consensus 607 ~~~~l~~-~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q 685 (936)
..+.+++ .|+ .|+|+|..++|.++.|+|++++||||||||+ |.+|+...+. ..+++++||+||++||.|
T Consensus 69 ~~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~--------~~g~~alIL~PTreLa~Q 138 (1176)
T PRK09401 69 FEKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLA--------KKGKKSYIIFPTRLLVEQ 138 (1176)
T ss_pred HHHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHH--------hcCCeEEEEeccHHHHHH
Confidence 3344433 578 8999999999999999999999999999996 5555554432 247899999999999999
Q ss_pred HHHHHHhcc-CCCCEEEEEECCccc-----hHHHHHHhc-CceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhcc-
Q psy7557 686 IEREVNKID-YKGLKAVCVYGGKEL-----EPQLEKIRE-GCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLD- 757 (936)
Q Consensus 686 ~~~~~~~~~-~~~~~~~~~~gg~~~-----~~~~~~l~~-~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~- 757 (936)
+.+.++.+. ..++.+..++|+... ..+...+.. +++|+|+||+++.+.+. .+...+++++|+||||+|++
T Consensus 139 i~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~ 216 (1176)
T PRK09401 139 VVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKS 216 (1176)
T ss_pred HHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhc
Confidence 999999985 346777777776542 223344554 48999999999998876 34566799999999999996
Q ss_pred ----------CCCH-HHHHHHhhhcCC------------------------CceEEEEEecCChH-HHHHHHHhcCCCeE
Q psy7557 758 ----------LGFE-PQINKTSIYINP------------------------NRQTVMTSATWNKD-VQRVAKKYMVNPVK 801 (936)
Q Consensus 758 ----------~~~~-~~~~~i~~~~~~------------------------~~q~v~~SAT~~~~-~~~~~~~~~~~~~~ 801 (936)
.||. ..+..+...++. ..|++++|||+++. +.. .++.++..
T Consensus 217 ~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~ 293 (1176)
T PRK09401 217 SKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLG 293 (1176)
T ss_pred ccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccce
Confidence 6785 567777666553 68999999999864 332 23345555
Q ss_pred EEeCCCCcccCCceEEEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHH---HHHHHHHHHhcCCceEEEeCCCCH
Q psy7557 802 VNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKAS---VSAMSSDLACQYRKSCSLYGDLSQ 878 (936)
Q Consensus 802 i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~---~~~l~~~L~~~~~~~~~~h~~l~~ 878 (936)
+.++.... ...++.+.+..+. .+...+..++... +.++||||+++.. |+.++..|...|+.+..+||+|
T Consensus 294 ~~v~~~~~-~~rnI~~~yi~~~--~k~~~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-- 365 (1176)
T PRK09401 294 FEVGSPVF-YLRNIVDSYIVDE--DSVEKLVELVKRL---GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-- 365 (1176)
T ss_pred EEecCccc-ccCCceEEEEEcc--cHHHHHHHHHHhc---CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH--
Confidence 66555432 3345666665554 5667778877665 2579999999877 9999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCcEEEe----cccCccCCCCCC-CCEEEEccCCC------ChhhhHhhhhhcc
Q psy7557 879 EDREIALEDITSGYARICVA----TDVASRGLDVPD-LTHVINYDFPS------HIEEYVHRVGRTG 934 (936)
Q Consensus 879 ~~R~~~~~~F~~g~~~vLVa----T~~~~~Gidip~-v~~VI~~d~p~------s~~~yiqr~GRaG 934 (936)
...+++|++|+++|||| ||+++||||+|+ |++|||||+|. ..+.|.||+||+-
T Consensus 366 ---~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 366 ---ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLL 429 (1176)
T ss_pred ---HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHH
Confidence 23459999999999999 699999999999 89999999997 6788999999983
No 115
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.4e-38 Score=372.20 Aligned_cols=321 Identities=20% Similarity=0.261 Sum_probs=259.7
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHHHHHhhh-cCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHH
Q psy7557 603 HYPEILRQLENLSFTTPSPIQAQAWPILM-SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRE 681 (936)
Q Consensus 603 l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l-~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~ 681 (936)
+.+.+.+.++..|+.+++|-|+.++...+ .|+|+++++|||||||+.+++.++..+.. .+.+++|+||+++
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~--------~~~k~vYivPlkA 87 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLE--------GGGKVVYIVPLKA 87 (766)
T ss_pred ccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHh--------cCCcEEEEeChHH
Confidence 55667888888899888888888876654 67999999999999999999999987753 2678999999999
Q ss_pred HHHHHHHHHHhccCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCH
Q psy7557 682 LATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFE 761 (936)
Q Consensus 682 La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~ 761 (936)
||.|.++.++++...|+++...+|+.+.... ...+++|+|+|||+|..++++....+..+++|||||+|.+.+....
T Consensus 88 La~Ek~~~~~~~~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG 164 (766)
T COG1204 88 LAEEKYEEFSRLEELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRG 164 (766)
T ss_pred HHHHHHHHhhhHHhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccC
Confidence 9999999999888889999999998876653 2245899999999999999988888999999999999998887666
Q ss_pred HHHHHHhhhcC---CCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcch------hHHHHH
Q psy7557 762 PQINKTSIYIN---PNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDE------KKDWLM 832 (936)
Q Consensus 762 ~~~~~i~~~~~---~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------k~~~l~ 832 (936)
+.++.+...++ +..|++++|||+| +..+++.|+..++......+..........+.+....... ..+...
T Consensus 165 ~~lE~iv~r~~~~~~~~rivgLSATlp-N~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~ 243 (766)
T COG1204 165 PVLESIVARMRRLNELIRIVGLSATLP-NAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLAL 243 (766)
T ss_pred ceehhHHHHHHhhCcceEEEEEeeecC-CHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHH
Confidence 66666655543 4589999999996 7889999988777744444444333333444444444222 334444
Q ss_pred HHHHhccCCCCcEEEEcCChHHHHHHHHHHHh-------------------------------------cCCceEEEeCC
Q psy7557 833 EFFDNMDEERDKVMVFMGRKASVSAMSSDLAC-------------------------------------QYRKSCSLYGD 875 (936)
Q Consensus 833 ~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~-------------------------------------~~~~~~~~h~~ 875 (936)
.++......++++||||+|++.+...+..|.. ...+++.||+|
T Consensus 244 ~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAG 323 (766)
T COG1204 244 ELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAG 323 (766)
T ss_pred HHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccC
Confidence 55555557789999999999999999988872 01356789999
Q ss_pred CCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEE----Ecc-----CCCChhhhHhhhhhccC
Q psy7557 876 LSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVI----NYD-----FPSHIEEYVHRVGRTGE 935 (936)
Q Consensus 876 l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI----~~d-----~p~s~~~yiqr~GRaGR 935 (936)
|+.++|..+++.|+.|+++|||||+++++|+|+|+-.+|| .|+ .+.+.-+|+||.|||||
T Consensus 324 L~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGR 392 (766)
T COG1204 324 LPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGR 392 (766)
T ss_pred CCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCC
Confidence 9999999999999999999999999999999999888877 377 56678999999999999
No 116
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=1.4e-37 Score=366.17 Aligned_cols=305 Identities=22% Similarity=0.275 Sum_probs=226.3
Q ss_pred HHHHHHhCCCCCCcHHHHHHHHhhhcC------CcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCH
Q psy7557 607 ILRQLENLSFTTPSPIQAQAWPILMSG------HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTR 680 (936)
Q Consensus 607 ~~~~l~~~g~~~p~~iQ~~ai~~~l~g------~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~ 680 (936)
+.+.++.++| .||++|.+|++.++++ .+.+++||||||||++|++|++..+ ..|.+++|++||+
T Consensus 225 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~---------~~g~qvlilaPT~ 294 (630)
T TIGR00643 225 LTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAI---------EAGYQVALMAPTE 294 (630)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHH---------HcCCcEEEECCHH
Confidence 4566788999 8999999999999876 3689999999999999999998766 2477899999999
Q ss_pred HHHHHHHHHHHhcc-CCCCEEEEEECCccchH---HHHHHhcC-ceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchh
Q psy7557 681 ELATQIEREVNKID-YKGLKAVCVYGGKELEP---QLEKIREG-CHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRM 755 (936)
Q Consensus 681 ~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~---~~~~l~~~-~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l 755 (936)
+||.|+++.++++. ..++++..++|+..... ....+.++ ++|+|+||+.+.+ ...+++++++||||+|++
T Consensus 295 ~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~f 369 (630)
T TIGR00643 295 ILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRF 369 (630)
T ss_pred HHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhc
Confidence 99999999999874 45899999999987654 33344443 7999999987753 456889999999999986
Q ss_pred ccCCCHHHHHHHhhhcC--CCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHH
Q psy7557 756 LDLGFEPQINKTSIYIN--PNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLME 833 (936)
Q Consensus 756 ~~~~~~~~~~~i~~~~~--~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 833 (936)
... +...+..... ..+++++||||+.+....+......+...+. .... ....+...+ .....+ ..++.
T Consensus 370 g~~----qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~--~~p~-~r~~i~~~~--~~~~~~-~~~~~ 439 (630)
T TIGR00643 370 GVE----QRKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIID--ELPP-GRKPITTVL--IKHDEK-DIVYE 439 (630)
T ss_pred cHH----HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeec--cCCC-CCCceEEEE--eCcchH-HHHHH
Confidence 422 1122222222 2678999999976644333222111211111 1110 011222222 222222 33444
Q ss_pred HHHhccCCCCcEEEEcCCh--------HHHHHHHHHHHhc--CCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCc
Q psy7557 834 FFDNMDEERDKVMVFMGRK--------ASVSAMSSDLACQ--YRKSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 903 (936)
Q Consensus 834 ~l~~~~~~~~~~iIF~~s~--------~~~~~l~~~L~~~--~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~ 903 (936)
.+......+.+++|||+.. ..+..++..|... +..+..+||+|++++|..+++.|++|+.+|||||++++
T Consensus 440 ~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie 519 (630)
T TIGR00643 440 FIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIE 519 (630)
T ss_pred HHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceee
Confidence 4444334567899999875 4566777777654 56789999999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEccCCC-ChhhhHhhhhhccCC
Q psy7557 904 RGLDVPDLTHVINYDFPS-HIEEYVHRVGRTGEF 936 (936)
Q Consensus 904 ~Gidip~v~~VI~~d~p~-s~~~yiqr~GRaGR~ 936 (936)
+|+|+|++++||+++.|. +...|.||+||+||.
T Consensus 520 ~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~ 553 (630)
T TIGR00643 520 VGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRG 553 (630)
T ss_pred cCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccC
Confidence 999999999999999996 678889999999995
No 117
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.9e-37 Score=366.77 Aligned_cols=300 Identities=20% Similarity=0.289 Sum_probs=233.9
Q ss_pred HHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHh-cc-CCCCEEEE
Q psy7557 105 QAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK-ID-YKGLKAVC 182 (936)
Q Consensus 105 ~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~-~~-~~~~~~~~ 182 (936)
+.+..+.++++++++|+||||||.+|.+|++.... .+.+++|+.|||++|.|+++.+.+ ++ ..|..+..
T Consensus 9 ~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~---------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy 79 (819)
T TIGR01970 9 ALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG---------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGY 79 (819)
T ss_pred HHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc---------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEE
Confidence 34455667789999999999999999999886541 245899999999999999999865 43 33556666
Q ss_pred EeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccch-hhhcCCCHHH-HHHHHhhcCCCCcEEEE
Q psy7557 183 VYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEAD-RMLDLGFEPQ-INKTSIYINPNRQTVMT 260 (936)
Q Consensus 183 ~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah-~l~~~~~~~~-~~~i~~~~~~~~q~~~~ 260 (936)
..++.. .....++|+|+|||+|.+++... ..++++++|||||+| ++++.++.-. +..+...++++.|+++|
T Consensus 80 ~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlm 152 (819)
T TIGR01970 80 RVRGEN------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAM 152 (819)
T ss_pred EEcccc------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEE
Confidence 555533 22345799999999999988764 579999999999999 6787766543 34555667889999999
Q ss_pred EeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhH-----HHHHHHHHhccCCCCcEEEEeCchHHH
Q psy7557 261 SATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKK-----DWLMEFFDNMDEERDKVMVFMGRKASV 335 (936)
Q Consensus 261 SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~-----~~l~~~l~~~~~~~~~~iVF~~~~~~~ 335 (936)
|||++... ...|+.++..+.+... ...+.+.+......++. ..+...+. ...+++|||++++.++
T Consensus 153 SATl~~~~---l~~~l~~~~vI~~~gr----~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~---~~~g~iLVFlpg~~eI 222 (819)
T TIGR01970 153 SATLDGER---LSSLLPDAPVVESEGR----SFPVEIRYLPLRGDQRLEDAVSRAVEHALA---SETGSILVFLPGQAEI 222 (819)
T ss_pred eCCCCHHH---HHHHcCCCcEEEecCc----ceeeeeEEeecchhhhHHHHHHHHHHHHHH---hcCCcEEEEECCHHHH
Confidence 99998654 3566666555544332 23455555554444332 12222322 2367899999999999
Q ss_pred HHHHHHhhh---cCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEecCCCC----------
Q psy7557 336 SAMSSDLAC---QYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSH---------- 402 (936)
Q Consensus 336 ~~l~~~L~~---~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s---------- 402 (936)
+.+++.|.. .++.+..+||+|++++|..+++.|++|+.+||||||++++|||||+|++||++++|+.
T Consensus 223 ~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~ 302 (819)
T TIGR01970 223 RRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGIT 302 (819)
T ss_pred HHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCc
Confidence 999999987 3688999999999999999999999999999999999999999999999999999862
Q ss_pred --------ccccccCCCCcccCCCceeEEEEecccCh
Q psy7557 403 --------IEEYVHRVGRTGRAGKSGESITLMTRKDW 431 (936)
Q Consensus 403 --------~~~y~qr~GRagR~g~~g~~~~~~~~~~~ 431 (936)
..+|+||+|||||. .+|.||.++++.+.
T Consensus 303 ~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~ 338 (819)
T TIGR01970 303 RLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQH 338 (819)
T ss_pred eeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHH
Confidence 23589999999999 79999999998764
No 118
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=4e-37 Score=357.40 Aligned_cols=385 Identities=17% Similarity=0.171 Sum_probs=318.9
Q ss_pred CCHHHHHHHHh-CCCCCCcHHHHHHHHHHhcC------CcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEE
Q psy7557 83 HYPEILRQLEN-LSFTTPSPIQAQAWPILMSG------HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLV 155 (936)
Q Consensus 83 ~~~~l~~~l~~-~g~~~~~~~Q~~ai~~~~~g------~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~li 155 (936)
.+.+....+.. .+| .-||-|..||..+.+. +|-|+||..|.|||.+++-+++..+ ..|++|.|
T Consensus 579 ~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV---------~~GKQVAv 648 (1139)
T COG1197 579 PDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAV---------MDGKQVAV 648 (1139)
T ss_pred CChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHh---------cCCCeEEE
Confidence 34445555544 566 6799999999998753 6999999999999999999999877 45789999
Q ss_pred EcCcHHHHHHHHHHHHh-ccCCCCEEEEEeCCccch---HHHHHhhcC-CcEEEeCCchhHHHHHcCCcCCCCceEEEEc
Q psy7557 156 MAPTRELATQIEREVNK-IDYKGLKAVCVYGGKEIE---PQLEKIREG-CHILIATPGRLNDFVSRASIDLKAVSFVVLD 230 (936)
Q Consensus 156 l~Pt~~La~Q~~~~~~~-~~~~~~~~~~~~gg~~~~---~~~~~~~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViD 230 (936)
+|||.-||+|+++.|+. |...++++..+..=.+.+ .....+++| .|||||| +.|.++.+.++++.++|||
T Consensus 649 LVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT-----HrLL~kdv~FkdLGLlIID 723 (1139)
T COG1197 649 LVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT-----HRLLSKDVKFKDLGLLIID 723 (1139)
T ss_pred EcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEec-----hHhhCCCcEEecCCeEEEe
Confidence 99999999999999987 888899998886544443 335566677 8999999 7777788899999999999
Q ss_pred cchhhhcCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHH
Q psy7557 231 EADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDW 310 (936)
Q Consensus 231 Eah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 310 (936)
|-|+ |+..-+.-++.++.+..++-+|||+-|....++...+++...|.+.+.+. ..+...+...++.--.+.
T Consensus 724 EEqR-----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R---~pV~T~V~~~d~~~ireA 795 (1139)
T COG1197 724 EEQR-----FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDR---LPVKTFVSEYDDLLIREA 795 (1139)
T ss_pred chhh-----cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCC---cceEEEEecCChHHHHHH
Confidence 9999 66667777778889999999999999999999999999988887766542 234433332232222233
Q ss_pred HHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhc--CCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCC
Q psy7557 311 LMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQ--YRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDV 388 (936)
Q Consensus 311 l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDi 388 (936)
+.. ++ ..++++...+|+.++.+.+++.|+.. ..+++..||.|+..+-+.++..|.+|+++|||||.+.+.||||
T Consensus 796 I~R---El-~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDI 871 (1139)
T COG1197 796 ILR---EL-LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDI 871 (1139)
T ss_pred HHH---HH-hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCC
Confidence 332 22 45899999999999999999999876 3567889999999999999999999999999999999999999
Q ss_pred CCCcEEEEecCCC-CccccccCCCCcccCCCceeEEEEecccC--hhhHHhHHHHHhhcC--CccchhhhhccccceeEe
Q psy7557 389 PDLTHVINYDFPS-HIEEYVHRVGRTGRAGKSGESITLMTRKD--WSHAHEIIPILEEGG--HESYMIWRRDSRIALHVI 463 (936)
Q Consensus 389 p~v~~VI~~d~p~-s~~~y~qr~GRagR~g~~g~~~~~~~~~~--~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~~ 463 (936)
|+++++|..+.-. ..++..|..||+||..+.|+|++++.+.+ .+.+.+.++.+++.. ..++.++++|.++|+.+.
T Consensus 872 PnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI~~~~~LGaGf~lA~~DLeIRGaGN 951 (1139)
T COG1197 872 PNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIASFTELGAGFKLAMHDLEIRGAGN 951 (1139)
T ss_pred CCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCccccCHHHHHHHHHHHhhhhcCchHHHHhcchhcccccc
Confidence 9999999776643 68999999999999999999999998754 455666677666643 467889999999999999
Q ss_pred ecCCceeeecccCCCcchhhhcccchhhhhc
Q psy7557 464 LEGGEEVVEEEEGGEDGMEILVGVDLEVVME 494 (936)
Q Consensus 464 ~~~~~~~~~~~e~~~~~~~~~~~~~l~~~~~ 494 (936)
++|.+|++++.+.|++.|.++++++++.+..
T Consensus 952 lLG~eQSG~I~~VGf~LY~~mLeeAI~~lk~ 982 (1139)
T COG1197 952 LLGEEQSGHIESVGFDLYMEMLEEAIAALKG 982 (1139)
T ss_pred ccCccccCchheecHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999987644
No 119
>KOG0349|consensus
Probab=100.00 E-value=3.1e-38 Score=321.89 Aligned_cols=276 Identities=28% Similarity=0.464 Sum_probs=223.6
Q ss_pred EEEEcCcHHHHHHHHHHHHhcc----CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEE
Q psy7557 153 VLVMAPTRELATQIEREVNKID----YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVV 228 (936)
Q Consensus 153 ~lil~Pt~~La~Q~~~~~~~~~----~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lV 228 (936)
++|+-|.||||.|.++++++|. ...++...+.||.-...|...+..|.+|+|+||+|+.+.++.+.+.+..++++|
T Consensus 289 avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crFlv 368 (725)
T KOG0349|consen 289 AVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRFLV 368 (725)
T ss_pred eeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEEEE
Confidence 7999999999999999887763 234566688899999999999999999999999999999999999999999999
Q ss_pred EccchhhhcCCCHHHHHHHHhhcC------CCCcEEEEEeccch-HHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEE
Q psy7557 229 LDEADRMLDLGFEPQINKTSIYIN------PNRQTVMTSATWNK-DVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIII 301 (936)
Q Consensus 229 iDEah~l~~~~~~~~~~~i~~~~~------~~~q~~~~SAT~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 301 (936)
+||||.++..|+...+.++...++ ...|.+.+|||+.. ++..+..+.|.-|..+.....+. .+..+.+.+..
T Consensus 369 lDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~-vpetvHhvv~l 447 (725)
T KOG0349|consen 369 LDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDL-VPETVHHVVKL 447 (725)
T ss_pred ecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccc-cchhhccceee
Confidence 999999999999999998877775 24699999999852 45566667777776666554432 23333332222
Q ss_pred eCch------------------------------hhHHHHHHHHHh-------ccCCCCcEEEEeCchHHHHHHHHHhhh
Q psy7557 302 LDED------------------------------EKKDWLMEFFDN-------MDEERDKVMVFMGRKASVSAMSSDLAC 344 (936)
Q Consensus 302 ~~~~------------------------------~k~~~l~~~l~~-------~~~~~~~~iVF~~~~~~~~~l~~~L~~ 344 (936)
+... +....-..+++. -.....+.||||.|+..|+.|.+++..
T Consensus 448 v~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~q 527 (725)
T KOG0349|consen 448 VCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQ 527 (725)
T ss_pred cCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHH
Confidence 1110 000011111110 012357899999999999999999998
Q ss_pred cC---CceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCcee
Q psy7557 345 QY---RKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGE 421 (936)
Q Consensus 345 ~~---~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~ 421 (936)
.+ +.+.++||+..+.+|...++.|+.+..+.|||||+++||+||.++.++||..+|.+...|+||+||+||+.+-|.
T Consensus 528 kgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermgl 607 (725)
T KOG0349|consen 528 KGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGL 607 (725)
T ss_pred cCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcce
Confidence 76 578889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccc
Q psy7557 422 SITLMTRK 429 (936)
Q Consensus 422 ~~~~~~~~ 429 (936)
||+++...
T Consensus 608 aislvat~ 615 (725)
T KOG0349|consen 608 AISLVATV 615 (725)
T ss_pred eEEEeecc
Confidence 99998643
No 120
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.4e-36 Score=318.52 Aligned_cols=327 Identities=22% Similarity=0.254 Sum_probs=242.6
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhcc-
Q psy7557 96 FTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID- 174 (936)
Q Consensus 96 ~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~- 174 (936)
.-+++.||......++.+ |+|++.|||-|||.++++-+...+.. ..+ ++|+++||+-|+.|+.+.|.++.
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~-------~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ 83 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRW-------FGG-KVLFLAPTKPLVLQHAEFCRKVTG 83 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHh-------cCC-eEEEecCCchHHHHHHHHHHHHhC
Confidence 347889999888888775 99999999999999988876655532 234 89999999999999999999953
Q ss_pred CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHHHhhcCCC
Q psy7557 175 YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPN 254 (936)
Q Consensus 175 ~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~ 254 (936)
...-.++.++|.....+. .......+|+|+||+.+.+-+..+.+++.++.++|||||||-....-...+.+.......+
T Consensus 84 ip~~~i~~ltGev~p~~R-~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~ 162 (542)
T COG1111 84 IPEDEIAALTGEVRPEER-EELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKN 162 (542)
T ss_pred CChhheeeecCCCChHHH-HHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccC
Confidence 344567777777665544 4444558999999999999999999999999999999999977655555555544445567
Q ss_pred CcEEEEEeccchHH---HHHHHHhcCCCEEEEeCCCCcc-----------------------------------------
Q psy7557 255 RQTVMTSATWNKDV---QRVAKKYMVNPVKVNVGSLDLA----------------------------------------- 290 (936)
Q Consensus 255 ~q~~~~SAT~~~~~---~~~~~~~~~~~~~i~~~~~~~~----------------------------------------- 290 (936)
+.++++|||+..+. +..+..+....+.+........
T Consensus 163 ~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~ 242 (542)
T COG1111 163 PLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKEL 242 (542)
T ss_pred ceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88999999975443 2233333222211111000000
Q ss_pred ----cCCce--------E-------EE-----------------------------------------------------
Q psy7557 291 ----ATHTV--------T-------QK----------------------------------------------------- 298 (936)
Q Consensus 291 ----~~~~~--------~-------~~----------------------------------------------------- 298 (936)
....+ . ..
T Consensus 243 g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~ 322 (542)
T COG1111 243 GVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAK 322 (542)
T ss_pred CceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHH
Confidence 00000 0 00
Q ss_pred ------------------EEEeCchhhHHHHHHHHHhcc--CCCCcEEEEeCchHHHHHHHHHhhhcCCcee-ee-----
Q psy7557 299 ------------------IIILDEDEKKDWLMEFFDNMD--EERDKVMVFMGRKASVSAMSSDLACQYRKSC-SL----- 352 (936)
Q Consensus 299 ------------------~~~~~~~~k~~~l~~~l~~~~--~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~-~~----- 352 (936)
...--...|.+.+.+++.... ....++|||++.+.+|+.+..+|...+..+. .+
T Consensus 323 ~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~ 402 (542)
T COG1111 323 SLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQAS 402 (542)
T ss_pred HHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccc
Confidence 000001223333444443322 3457999999999999999999999887774 22
Q ss_pred ---cCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEeccc
Q psy7557 353 ---YGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRK 429 (936)
Q Consensus 353 ---h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~ 429 (936)
..||+|.++.+++++|+.|.++|||||++.++|+|||+++.||.|++-.|...++||.|||||. +.|..+++++++
T Consensus 403 r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~g 481 (542)
T COG1111 403 REGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEG 481 (542)
T ss_pred cccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecC
Confidence 2589999999999999999999999999999999999999999999999999999999999999 899999999998
Q ss_pred Chhh
Q psy7557 430 DWSH 433 (936)
Q Consensus 430 ~~~~ 433 (936)
+.+.
T Consensus 482 trde 485 (542)
T COG1111 482 TRDE 485 (542)
T ss_pred chHH
Confidence 5443
No 121
>KOG0352|consensus
Probab=100.00 E-value=8.3e-38 Score=318.74 Aligned_cols=332 Identities=19% Similarity=0.230 Sum_probs=251.4
Q ss_pred HHHHHHHh-CCCCCC-cHHHHHHHHHHhcC-CcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHH
Q psy7557 86 EILRQLEN-LSFTTP-SPIQAQAWPILMSG-HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTREL 162 (936)
Q Consensus 86 ~l~~~l~~-~g~~~~-~~~Q~~ai~~~~~g-~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~L 162 (936)
.+.+.|++ +|+.+. ++.|.+|+.++..+ +|+.+++|||+||++||.+|+|.+ +...||+.|..+|
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~------------~gITIV~SPLiAL 73 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH------------GGITIVISPLIAL 73 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh------------CCeEEEehHHHHH
Confidence 35567766 688766 89999999998755 699999999999999999999853 3389999999999
Q ss_pred HHHHHHHHHhccCCCCEEEEEeCCcc---chHHHHHh---hcCCcEEEeCCchhHHHH----HcCCcCCCCceEEEEccc
Q psy7557 163 ATQIEREVNKIDYKGLKAVCVYGGKE---IEPQLEKI---REGCHILIATPGRLNDFV----SRASIDLKAVSFVVLDEA 232 (936)
Q Consensus 163 a~Q~~~~~~~~~~~~~~~~~~~gg~~---~~~~~~~~---~~~~~Iiv~Tp~~l~~~l----~~~~~~~~~~~~lViDEa 232 (936)
..++.+.+.++. +++..+..-.+ .+.....+ +....+++.|||....-. .++..+-..+.|+|+|||
T Consensus 74 IkDQiDHL~~LK---Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEA 150 (641)
T KOG0352|consen 74 IKDQIDHLKRLK---VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEA 150 (641)
T ss_pred HHHHHHHHHhcC---CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechh
Confidence 888777777752 33333333222 22222223 334689999999753321 222333456899999999
Q ss_pred hhhhcCC--CHHHHHHHHhhc--CCCCcEEEEEeccchHHHHHH--HHhcCCCEEEEeCCCCcccCCceEEEEEEeC---
Q psy7557 233 DRMLDLG--FEPQINKTSIYI--NPNRQTVMTSATWNKDVQRVA--KKYMVNPVKVNVGSLDLAATHTVTQKIIILD--- 303 (936)
Q Consensus 233 h~l~~~~--~~~~~~~i~~~~--~~~~q~~~~SAT~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--- 303 (936)
|++..|| |++++.++-... -++...+.++||.++.+++.+ ...+.+|+-+.-.+.- ....++-+.
T Consensus 151 HCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~F------R~NLFYD~~~K~ 224 (641)
T KOG0352|consen 151 HCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTF------RDNLFYDNHMKS 224 (641)
T ss_pred hhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcch------hhhhhHHHHHHH
Confidence 9999998 899888875443 368899999999999887643 3346778766432211 011111000
Q ss_pred -chhhHHHHHHHHHhc-----------cCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcC
Q psy7557 304 -EDEKKDWLMEFFDNM-----------DEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSG 371 (936)
Q Consensus 304 -~~~k~~~l~~~l~~~-----------~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g 371 (936)
-.+-...|.++-... +...+-.||||.|++.|+.++-.|.+.|++...+|+|+...+|.++.+.|.+|
T Consensus 225 ~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~ 304 (641)
T KOG0352|consen 225 FITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNN 304 (641)
T ss_pred HhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcC
Confidence 011222333333221 12345679999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHH
Q psy7557 372 YARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEII 438 (936)
Q Consensus 372 ~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~ 438 (936)
++.|++||..+++|+|-|+|++|||+++|.|+..|.|..|||||+|...+|=++++.+|.....-|+
T Consensus 305 ~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi 371 (641)
T KOG0352|consen 305 EIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLV 371 (641)
T ss_pred CCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987665554
No 122
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=1.4e-36 Score=372.20 Aligned_cols=291 Identities=21% Similarity=0.297 Sum_probs=222.2
Q ss_pred HHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHH
Q psy7557 86 EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQ 165 (936)
Q Consensus 86 ~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q 165 (936)
++.+.+.+....+|+++|..++|.++.|+|++++||||||||+ |.+|+...+. ..+++++||+||++||.|
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~--------~~g~~vLIL~PTreLa~Q 136 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLA--------KKGKRCYIILPTTLLVIQ 136 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHH--------hcCCeEEEEeCHHHHHHH
Confidence 3455565544458999999999999999999999999999997 6677665543 236899999999999999
Q ss_pred HHHHHHhcc-CCCCEEE---EEeCCccchHH---HHHhhcC-CcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhc
Q psy7557 166 IEREVNKID-YKGLKAV---CVYGGKEIEPQ---LEKIREG-CHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLD 237 (936)
Q Consensus 166 ~~~~~~~~~-~~~~~~~---~~~gg~~~~~~---~~~~~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~ 237 (936)
+++.++++. ..++.+. .++||.+...+ +..+.++ ++|+|+||++|.+.+..-. . +++++|+||||+|++
T Consensus 137 i~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 137 VAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDVDALLK 213 (1171)
T ss_pred HHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeChHhhhh
Confidence 999999975 3344433 46688766544 3344444 9999999999988776421 2 899999999999998
Q ss_pred -----------CCCHHH-HHHHH----------------------hhcCCCCc--EEEEEec-cchHHHHHHHHhcCCCE
Q psy7557 238 -----------LGFEPQ-INKTS----------------------IYINPNRQ--TVMTSAT-WNKDVQRVAKKYMVNPV 280 (936)
Q Consensus 238 -----------~~~~~~-~~~i~----------------------~~~~~~~q--~~~~SAT-~~~~~~~~~~~~~~~~~ 280 (936)
+||.++ +..++ ..++..+| ++++||| +|..+.. .++.++.
T Consensus 214 ~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll 290 (1171)
T TIGR01054 214 ASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELL 290 (1171)
T ss_pred ccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHccccc
Confidence 688764 44432 22344555 5679999 5654432 3455666
Q ss_pred EEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCch---HHHHHHHHHhhhcCCceeeecCCCC
Q psy7557 281 KVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRK---ASVSAMSSDLACQYRKSCSLYGDLS 357 (936)
Q Consensus 281 ~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~---~~~~~l~~~L~~~~~~~~~~h~~~~ 357 (936)
.+.++... ....++.+.+..... +...+.+++... +.++||||+++ +.|+.+++.|...|+++..+||+|+
T Consensus 291 ~~~v~~~~-~~~r~I~~~~~~~~~--~~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~ 364 (1171)
T TIGR01054 291 GFEVGGGS-DTLRNVVDVYVEDED--LKETLLEIVKKL---GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP 364 (1171)
T ss_pred ceEecCcc-ccccceEEEEEeccc--HHHHHHHHHHHc---CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC
Confidence 66666543 234556666654443 245566777665 46899999999 9999999999999999999999997
Q ss_pred HHHHHHHHHHhhcCCcEEEEEe----cccccCCCCCC-CcEEEEecCCC
Q psy7557 358 QEDREIALEDITSGYARICVAT----DVASRGLDVPD-LTHVINYDFPS 401 (936)
Q Consensus 358 ~~~R~~~~~~f~~g~~~vLvaT----~~~~~GiDip~-v~~VI~~d~p~ 401 (936)
+ .+++.|++|+++||||| |+++||||+|+ |++|||||+|.
T Consensus 365 ~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 365 K----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred H----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 3 68999999999999994 99999999999 89999999873
No 123
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=7.3e-37 Score=381.05 Aligned_cols=307 Identities=18% Similarity=0.211 Sum_probs=240.8
Q ss_pred HHHHHHHHh-CCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHH
Q psy7557 605 PEILRQLEN-LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELA 683 (936)
Q Consensus 605 ~~~~~~l~~-~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La 683 (936)
.++.+.+++ +|| .|+++|.+++|.+++|+|++++||||||||++++++++... ..++++|||+||++|+
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~---------~~g~~aLVl~PTreLa 135 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA---------LKGKKCYIILPTTLLV 135 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH---------hcCCeEEEEECHHHHH
Confidence 445666766 899 69999999999999999999999999999997666655332 2467999999999999
Q ss_pred HHHHHHHHhccC---CCCEEEEEECCccchHHH---HHHhcC-ceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhc
Q psy7557 684 TQIEREVNKIDY---KGLKAVCVYGGKELEPQL---EKIREG-CHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRML 756 (936)
Q Consensus 684 ~Q~~~~~~~~~~---~~~~~~~~~gg~~~~~~~---~~l~~~-~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~ 756 (936)
.|+.+.++.+.. .++++..++||.+...+. ..+.++ ++|+|+||+++.+.+... ...+++++|+||||+|+
T Consensus 136 ~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD~ml 213 (1638)
T PRK14701 136 KQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVDAFL 213 (1638)
T ss_pred HHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECceecc
Confidence 999999999742 356778889998776653 345554 899999999998776542 12779999999999998
Q ss_pred c-----------CCCHHHHHH----Hhh----------------------hcCCCce-EEEEEecCChHHHHHHHHhcCC
Q psy7557 757 D-----------LGFEPQINK----TSI----------------------YINPNRQ-TVMTSATWNKDVQRVAKKYMVN 798 (936)
Q Consensus 757 ~-----------~~~~~~~~~----i~~----------------------~~~~~~q-~v~~SAT~~~~~~~~~~~~~~~ 798 (936)
+ .||.+.+.. ++. .++...| ++++|||+++... ...++.+
T Consensus 214 ~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~--~~~l~~~ 291 (1638)
T PRK14701 214 KASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD--RVKLYRE 291 (1638)
T ss_pred ccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH--HHHHhhc
Confidence 6 478887764 321 1234455 6779999985311 2234467
Q ss_pred CeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHH---HHHHHHHHHhcCCceEEEeCC
Q psy7557 799 PVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKAS---VSAMSSDLACQYRKSCSLYGD 875 (936)
Q Consensus 799 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~---~~~l~~~L~~~~~~~~~~h~~ 875 (936)
+..+.++... ....++.+.+..+....+ ..+..++... +..+||||+++.. |+.++..|...|+.+..+||+
T Consensus 292 ~l~f~v~~~~-~~lr~i~~~yi~~~~~~k-~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~ 366 (1638)
T PRK14701 292 LLGFEVGSGR-SALRNIVDVYLNPEKIIK-EHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK 366 (1638)
T ss_pred CeEEEecCCC-CCCCCcEEEEEECCHHHH-HHHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch
Confidence 7777776654 334456666665554444 4677777664 3579999999875 589999999999999999995
Q ss_pred CCHHHHHHHHHHhhcCCCcEEEec----ccCccCCCCCC-CCEEEEccCCC---ChhhhHhhh-------------hhcc
Q psy7557 876 LSQEDREIALEDITSGYARICVAT----DVASRGLDVPD-LTHVINYDFPS---HIEEYVHRV-------------GRTG 934 (936)
Q Consensus 876 l~~~~R~~~~~~F~~g~~~vLVaT----~~~~~Gidip~-v~~VI~~d~p~---s~~~yiqr~-------------GRaG 934 (936)
|..++++|++|+++||||| ++++||||+|+ |++|||||+|. +++.|.|.. ||+|
T Consensus 367 -----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~ 441 (1638)
T PRK14701 367 -----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEEL 441 (1638)
T ss_pred -----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhc
Confidence 8999999999999999999 58999999999 99999999999 888777765 8888
Q ss_pred C
Q psy7557 935 E 935 (936)
Q Consensus 935 R 935 (936)
|
T Consensus 442 ~ 442 (1638)
T PRK14701 442 K 442 (1638)
T ss_pred c
Confidence 7
No 124
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=5.4e-37 Score=364.05 Aligned_cols=299 Identities=19% Similarity=0.300 Sum_probs=232.3
Q ss_pred HHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHh-cc-CCCCEEEEE
Q psy7557 106 AWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK-ID-YKGLKAVCV 183 (936)
Q Consensus 106 ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~-~~-~~~~~~~~~ 183 (936)
.+..+.++++++++||||||||.+|.+|++.... .+.+++|++|||++|.|+++.+.+ ++ ..|..+...
T Consensus 13 i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~---------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~ 83 (812)
T PRK11664 13 LLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG---------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYR 83 (812)
T ss_pred HHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC---------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEE
Confidence 3445567789999999999999999998885431 234899999999999999999865 43 346677777
Q ss_pred eCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchh-hhcCCCH-HHHHHHHhhcCCCCcEEEEE
Q psy7557 184 YGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADR-MLDLGFE-PQINKTSIYINPNRQTVMTS 261 (936)
Q Consensus 184 ~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~-l~~~~~~-~~~~~i~~~~~~~~q~~~~S 261 (936)
+++.... ....+|+|+|||+|.+++... ..++++++|||||+|. .++.++. ..+..+...++++.|+++||
T Consensus 84 vr~~~~~------~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmS 156 (812)
T PRK11664 84 MRAESKV------GPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMS 156 (812)
T ss_pred ecCcccc------CCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEe
Confidence 7765422 134689999999999988764 5799999999999995 4554432 23345566678899999999
Q ss_pred eccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHH-----HHHHHHHhccCCCCcEEEEeCchHHHH
Q psy7557 262 ATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKD-----WLMEFFDNMDEERDKVMVFMGRKASVS 336 (936)
Q Consensus 262 AT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~-----~l~~~l~~~~~~~~~~iVF~~~~~~~~ 336 (936)
||++... ...++.++..+.+... ...+.+.+.......+.. .+...+. ...+.+|||++++.+++
T Consensus 157 ATl~~~~---l~~~~~~~~~I~~~gr----~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~---~~~g~iLVFlpg~~ei~ 226 (812)
T PRK11664 157 ATLDNDR---LQQLLPDAPVIVSEGR----SFPVERRYQPLPAHQRFDEAVARATAELLR---QESGSLLLFLPGVGEIQ 226 (812)
T ss_pred cCCCHHH---HHHhcCCCCEEEecCc----cccceEEeccCchhhhHHHHHHHHHHHHHH---hCCCCEEEEcCCHHHHH
Confidence 9998652 3456666555544322 234666665555444432 2222222 23689999999999999
Q ss_pred HHHHHhhh---cCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEecCCCC-----------
Q psy7557 337 AMSSDLAC---QYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSH----------- 402 (936)
Q Consensus 337 ~l~~~L~~---~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s----------- 402 (936)
.+++.|.. .++.+..+||+|++.+|..+++.|++|+.+||||||++++|||||+|++||+++.|+.
T Consensus 227 ~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~ 306 (812)
T PRK11664 227 RVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTR 306 (812)
T ss_pred HHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcce
Confidence 99999986 5678899999999999999999999999999999999999999999999999887753
Q ss_pred -------ccccccCCCCcccCCCceeEEEEecccCh
Q psy7557 403 -------IEEYVHRVGRTGRAGKSGESITLMTRKDW 431 (936)
Q Consensus 403 -------~~~y~qr~GRagR~g~~g~~~~~~~~~~~ 431 (936)
..+|.||.|||||. .+|.|+.++++.+.
T Consensus 307 L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 307 LVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred eEEEeechhhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 35799999999999 69999999998764
No 125
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=5.2e-37 Score=355.18 Aligned_cols=380 Identities=19% Similarity=0.247 Sum_probs=268.5
Q ss_pred hcccCCccccccCcCCccccCCCHHHHHHHHhhCCCceEEeecCCCccCCCCCCCCCCcccCh-HHhhcCCHHHHHHH-H
Q psy7557 15 KWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSF-KQAFQHYPEILRQL-E 92 (936)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~f-~~~~~~~~~l~~~l-~ 92 (936)
...++.++...+..-.+....+++++..........- +. .| ..+... .++|.+ +.++. .
T Consensus 13 ~l~~~~~~~~~i~~~~~~~~~lsd~~L~~~~~~~~~~-l~----~~-----------~~l~~~~~eafA~---vrea~~R 73 (790)
T PRK09200 13 RLKKYRKIVKQINKLEGKMSSLSDEELRQKTIEFKER-LA----SG-----------KTLDDILPEAFAV---VREAAKR 73 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HH----cC-----------CchHHHHHHHHHH---HHHHHHH
Confidence 3444445555555666788899998876543322100 00 01 000000 122211 22222 2
Q ss_pred hCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHh
Q psy7557 93 NLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK 172 (936)
Q Consensus 93 ~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 172 (936)
.+|. .|+++|..+++.+.+|+ |+.+.||+|||++|++|++...+ .|+.++|++||++||.|.++.+..
T Consensus 74 ~~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al---------~G~~v~VvTpt~~LA~qd~e~~~~ 141 (790)
T PRK09200 74 VLGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL---------EGKGVHLITVNDYLAKRDAEEMGQ 141 (790)
T ss_pred HhCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH---------cCCCeEEEeCCHHHHHHHHHHHHH
Confidence 3577 89999999999999887 99999999999999999986653 477899999999999999999999
Q ss_pred c-cCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchh-HHHHHcCC------cCCCCceEEEEccchhhh-cCC----
Q psy7557 173 I-DYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRL-NDFVSRAS------IDLKAVSFVVLDEADRML-DLG---- 239 (936)
Q Consensus 173 ~-~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~------~~~~~~~~lViDEah~l~-~~~---- 239 (936)
+ ...|+++++++||.+...+... ..+++|++|||+++ .|++..+. ..++.+.++|+||||.|+ |..
T Consensus 142 l~~~lGl~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpl 220 (790)
T PRK09200 142 VYEFLGLTVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPL 220 (790)
T ss_pred HHhhcCCeEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCce
Confidence 5 5789999999999885444333 35699999999999 56555432 346789999999999876 110
Q ss_pred -----------CHHHHHHHHhhcCC--------CC---------------------------------------------
Q psy7557 240 -----------FEPQINKTSIYINP--------NR--------------------------------------------- 255 (936)
Q Consensus 240 -----------~~~~~~~i~~~~~~--------~~--------------------------------------------- 255 (936)
+......+...+.+ ..
T Consensus 221 iisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~ 300 (790)
T PRK09200 221 IISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFK 300 (790)
T ss_pred eeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhh
Confidence 11112222221111 01
Q ss_pred ----------------------------------------------------------------cEEEEEeccchHHHHH
Q psy7557 256 ----------------------------------------------------------------QTVMTSATWNKDVQRV 271 (936)
Q Consensus 256 ----------------------------------------------------------------q~~~~SAT~~~~~~~~ 271 (936)
.+.+||.|....-..+
T Consensus 301 ~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~ 380 (790)
T PRK09200 301 RDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEF 380 (790)
T ss_pred cCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHH
Confidence 2334444443333333
Q ss_pred HHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceee
Q psy7557 272 AKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCS 351 (936)
Q Consensus 272 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~ 351 (936)
...|..+.+.|. ....... .-....+++...+|...+...+......+.++||||+|+..++.++..|...++++..
T Consensus 381 ~~~Y~l~v~~IP--t~kp~~r-~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~ 457 (790)
T PRK09200 381 FEVYNMEVVQIP--TNRPIIR-IDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNL 457 (790)
T ss_pred HHHhCCcEEECC--CCCCccc-ccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEE
Confidence 333332222221 1110000 0112234567778888888888775456889999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCC---CCCc-----EEEEecCCCCccccccCCCCcccCCCceeEE
Q psy7557 352 LYGDLSQEDREIALEDITSGYARICVATDVASRGLDV---PDLT-----HVINYDFPSHIEEYVHRVGRTGRAGKSGESI 423 (936)
Q Consensus 352 ~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDi---p~v~-----~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~ 423 (936)
+||++.+.++..+...++.| +|+||||+++||+|| |+|. +||+|++|.|...|+||+|||||.|.+|.++
T Consensus 458 L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~ 535 (790)
T PRK09200 458 LNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQ 535 (790)
T ss_pred ecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEE
Confidence 99999999998888888777 799999999999999 7998 9999999999999999999999999999999
Q ss_pred EEecccCh
Q psy7557 424 TLMTRKDW 431 (936)
Q Consensus 424 ~~~~~~~~ 431 (936)
+|++..|.
T Consensus 536 ~~is~eD~ 543 (790)
T PRK09200 536 FFISLEDD 543 (790)
T ss_pred EEEcchHH
Confidence 99998763
No 126
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=8.7e-37 Score=352.38 Aligned_cols=297 Identities=17% Similarity=0.216 Sum_probs=218.8
Q ss_pred cHHHHHHHHhhhcCCcEEEEecCCCCcchh---------hHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHH
Q psy7557 620 SPIQAQAWPILMSGHDMIGIAQTGTGKTFA---------FLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREV 690 (936)
Q Consensus 620 ~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~---------~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~ 690 (936)
..+|.++++.+++|++++++|+||||||.+ |++|.+..+.... ....+++++|++||||||.|+...+
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~---~~~~~~~ilvt~PrreLa~qi~~~i 242 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID---PNFIERPIVLSLPRVALVRLHSITL 242 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc---cccCCcEEEEECcHHHHHHHHHHHH
Confidence 458999999999999999999999999986 4444443331100 1234568999999999999999998
Q ss_pred Hhc-c---CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHH
Q psy7557 691 NKI-D---YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINK 766 (936)
Q Consensus 691 ~~~-~---~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~ 766 (936)
.+. + ..+..+...+||... .+......+.+|+|+|++.. ...++++++|||||||.+...+ ..+..
T Consensus 243 ~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~--DllL~ 312 (675)
T PHA02653 243 LKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG--DIIIA 312 (675)
T ss_pred HHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccch--hHHHH
Confidence 764 2 236778889999763 22222223579999997521 1247899999999999987765 33333
Q ss_pred Hhhhc-CCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcC----------cchhHHHHHHHH
Q psy7557 767 TSIYI-NPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD----------EDEKKDWLMEFF 835 (936)
Q Consensus 767 i~~~~-~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----------~~~k~~~l~~~l 835 (936)
+.... +..+|+++||||++.++..+ ..++.+|..+.+... ....+.+.+.... ...+.. +...+
T Consensus 313 llk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr---t~~pV~~~yi~~~~~~~~~~~y~~~~k~~-~l~~L 387 (675)
T PHA02653 313 VARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG---TLFPISEVYVKNKYNPKNKRAYIEEEKKN-IVTAL 387 (675)
T ss_pred HHHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC---cCCCeEEEEeecCcccccchhhhHHHHHH-HHHHH
Confidence 33333 33469999999999888776 577788888776532 2234444433221 111222 23333
Q ss_pred Hhc-cCCCCcEEEEcCChHHHHHHHHHHHhc--CCceEEEeCCCCHHHHHHHHHHh-hcCCCcEEEecccCccCCCCCCC
Q psy7557 836 DNM-DEERDKVMVFMGRKASVSAMSSDLACQ--YRKSCSLYGDLSQEDREIALEDI-TSGYARICVATDVASRGLDVPDL 911 (936)
Q Consensus 836 ~~~-~~~~~~~iIF~~s~~~~~~l~~~L~~~--~~~~~~~h~~l~~~~R~~~~~~F-~~g~~~vLVaT~~~~~Gidip~v 911 (936)
... ....+.+||||+++.+++.++..|... +..+..+||+|++. +++++.| ++|+.+|||||+++++|||+|+|
T Consensus 388 ~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V 465 (675)
T PHA02653 388 KKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNA 465 (675)
T ss_pred HHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCe
Confidence 322 123568999999999999999999877 68899999999975 5677777 78999999999999999999999
Q ss_pred CEEEEcc---CCC---------ChhhhHhhhhhccCC
Q psy7557 912 THVINYD---FPS---------HIEEYVHRVGRTGEF 936 (936)
Q Consensus 912 ~~VI~~d---~p~---------s~~~yiqr~GRaGR~ 936 (936)
++||++| .|. |.++|+||+|||||.
T Consensus 466 ~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~ 502 (675)
T PHA02653 466 THVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV 502 (675)
T ss_pred eEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC
Confidence 9999999 665 888999999999995
No 127
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=3.7e-37 Score=342.97 Aligned_cols=301 Identities=19% Similarity=0.164 Sum_probs=212.3
Q ss_pred cEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhccCCCCEEEEEeCCccch----
Q psy7557 115 DMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIE---- 190 (936)
Q Consensus 115 d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~---- 190 (936)
|++++||||||||++|++|++..+.. ..+.+++|++|+++|+.|+++.+..+... .+..++|+....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~-------~~~~~ii~v~P~~~L~~q~~~~l~~~f~~--~~~~~~~~~~~~~~~~ 71 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS-------QKADRVIIALPTRATINAMYRRAKELFGS--NLGLLHSSSSFKRIKE 71 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh-------CCCCeEEEEeehHHHHHHHHHHHHHHhCc--ccEEeeccHHHHHHhc
Confidence 68999999999999999999876532 34568999999999999999999985222 334444432210
Q ss_pred --------HHHHHhh------cCCcEEEeCCchhHHHHHcCC----cCCC--CceEEEEccchhhhcCCCHHHHHHHHhh
Q psy7557 191 --------PQLEKIR------EGCHILIATPGRLNDFVSRAS----IDLK--AVSFVVLDEADRMLDLGFEPQINKTSIY 250 (936)
Q Consensus 191 --------~~~~~~~------~~~~Iiv~Tp~~l~~~l~~~~----~~~~--~~~~lViDEah~l~~~~~~~~~~~i~~~ 250 (936)
....... ...+|+|+||+++...+.... ..+. ..+++||||||.+.++++.. +..++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~ 150 (358)
T TIGR01587 72 MGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEV 150 (358)
T ss_pred cCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHH
Confidence 1111110 126899999999988766521 1111 23799999999998875544 4444444
Q ss_pred c-CCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEe--CchhhHHHHHHHHHhccCCCCcEEE
Q psy7557 251 I-NPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIIL--DEDEKKDWLMEFFDNMDEERDKVMV 327 (936)
Q Consensus 251 ~-~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~k~~~l~~~l~~~~~~~~~~iV 327 (936)
+ ..+.|+++||||+|..+.+++..+...+......... ......+.+..+ ....+...+..++... ..++++||
T Consensus 151 l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~lV 227 (358)
T TIGR01587 151 LKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKE--ERRFERHRFIKIESDKVGEISSLERLLEFI-KKGGKIAI 227 (358)
T ss_pred HHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCcc--ccccccccceeeccccccCHHHHHHHHHHh-hCCCeEEE
Confidence 4 3578999999999987777766654432211111110 000112222222 1234455555555443 34689999
Q ss_pred EeCchHHHHHHHHHhhhcCC--ceeeecCCCCHHHHHH----HHHHhhcCCcEEEEEecccccCCCCCCCcEEEEecCCC
Q psy7557 328 FMGRKASVSAMSSDLACQYR--KSCSLYGDLSQEDREI----ALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPS 401 (936)
Q Consensus 328 F~~~~~~~~~l~~~L~~~~~--~~~~~h~~~~~~~R~~----~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~ 401 (936)
||++++.++.+++.|...+. .+..+||++++.+|.. +++.|++|+.+|||||+++++|+|+| +++||++..|
T Consensus 228 f~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~- 305 (358)
T TIGR01587 228 IVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP- 305 (358)
T ss_pred EECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC-
Confidence 99999999999999988765 4889999999999976 48899999999999999999999995 8999999877
Q ss_pred CccccccCCCCcccCCCc----eeEEEEecccCh
Q psy7557 402 HIEEYVHRVGRTGRAGKS----GESITLMTRKDW 431 (936)
Q Consensus 402 s~~~y~qr~GRagR~g~~----g~~~~~~~~~~~ 431 (936)
..+|+||+||+||.|+. |..+++....+.
T Consensus 306 -~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~ 338 (358)
T TIGR01587 306 -IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEG 338 (358)
T ss_pred -HHHHHHHhccccCCCCCCCCCCeEEEEeecCCC
Confidence 78999999999999765 356666655443
No 128
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=1.3e-36 Score=349.12 Aligned_cols=310 Identities=16% Similarity=0.152 Sum_probs=225.6
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhccC
Q psy7557 96 FTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDY 175 (936)
Q Consensus 96 ~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 175 (936)
...|+++|.+|++.++.+++.++++|||+|||+++...+ ..... ....++|||+||++|+.|+.+.++++..
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~-~~~~~-------~~~~~vLilvpt~eL~~Q~~~~l~~~~~ 183 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLS-RYYLE-------NYEGKVLIIVPTTSLVTQMIDDFVDYRL 183 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH-HHHHh-------cCCCeEEEEECcHHHHHHHHHHHHHhcc
Confidence 458999999999999999999999999999999765422 22211 2234899999999999999999999753
Q ss_pred -CCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHHHhhcCCC
Q psy7557 176 -KGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPN 254 (936)
Q Consensus 176 -~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~ 254 (936)
....+..+.+|.... .+.+|+|+||+++.+... ..+++++++|+||||++... .+..++..+++.
T Consensus 184 ~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~~ 249 (501)
T PHA02558 184 FPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGK----SLTSIITKLDNC 249 (501)
T ss_pred ccccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccch----hHHHHHHhhhcc
Confidence 234455666765432 347999999999876432 24678999999999998754 455666666667
Q ss_pred CcEEEEEeccchHHHHHH-HHhcCCCEEEEeCCCCccc-----CCceEE--------------------EE-EEeCchhh
Q psy7557 255 RQTVMTSATWNKDVQRVA-KKYMVNPVKVNVGSLDLAA-----THTVTQ--------------------KI-IILDEDEK 307 (936)
Q Consensus 255 ~q~~~~SAT~~~~~~~~~-~~~~~~~~~i~~~~~~~~~-----~~~~~~--------------------~~-~~~~~~~k 307 (936)
+++++||||++....... -..+..|+...+...+... ...+.. .+ .......+
T Consensus 250 ~~~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~R 329 (501)
T PHA02558 250 KFKFGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKR 329 (501)
T ss_pred ceEEEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHH
Confidence 899999999864321111 0111122222211100000 000000 00 01122233
Q ss_pred HHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEe-cccccCC
Q psy7557 308 KDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVAT-DVASRGL 386 (936)
Q Consensus 308 ~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT-~~~~~Gi 386 (936)
...+...+......+.+++|||++.++++.+++.|...+.++..+||+|++++|..+++.|++|+..||||| +++++|+
T Consensus 330 n~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~ 409 (501)
T PHA02558 330 NKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGI 409 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecccc
Confidence 344444444444456789999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred CCCCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEec
Q psy7557 387 DVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMT 427 (936)
Q Consensus 387 Dip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~ 427 (936)
|+|++++||++++|.|...|+||+||++|.+..+...++++
T Consensus 410 Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D 450 (501)
T PHA02558 410 SIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWD 450 (501)
T ss_pred ccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEE
Confidence 99999999999999999999999999999976655444543
No 129
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=8.6e-37 Score=322.50 Aligned_cols=319 Identities=19% Similarity=0.268 Sum_probs=258.6
Q ss_pred hcCCHHHHHHHHhCCCCCCcHHHHHHHHh-hhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecC
Q psy7557 601 FQHYPEILRQLENLSFTTPSPIQAQAWPI-LMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPT 679 (936)
Q Consensus 601 ~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~-~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt 679 (936)
+++++++.+.|+..|++.+.|+|.-|+.. ++.|.|.+++++|+||||++..++-+..++ ..|.+-||++|.
T Consensus 199 Ldipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l--------~~g~KmlfLvPL 270 (830)
T COG1202 199 LDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLL--------SGGKKMLFLVPL 270 (830)
T ss_pred cCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHH--------hCCCeEEEEehh
Confidence 57889999999999999999999999987 669999999999999999999988776554 357899999999
Q ss_pred HHHHHHHHHHHHh-ccCCCCEEEEEECCccchHHH----HHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccch
Q psy7557 680 RELATQIEREVNK-IDYKGLKAVCVYGGKELEPQL----EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADR 754 (936)
Q Consensus 680 ~~La~Q~~~~~~~-~~~~~~~~~~~~gg~~~~~~~----~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~ 754 (936)
.+||+|-++.|+. |+..++++..-.|........ ......+||||+|.|-+..+++.+ ..+.++..|||||+|.
T Consensus 271 VALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiHt 349 (830)
T COG1202 271 VALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIHT 349 (830)
T ss_pred HHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeeeee
Confidence 9999999999965 678888887777754333221 112234799999999998888877 5689999999999998
Q ss_pred hccCCCHHHHHHHh---hhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcC-cchhHHH
Q psy7557 755 MLDLGFEPQINKTS---IYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD-EDEKKDW 830 (936)
Q Consensus 755 l~~~~~~~~~~~i~---~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~k~~~ 830 (936)
+-+....+.+.-+. ..+-++.|++.+|||. .+...+++.+..+++.+.-.+.+ +...+.++. ..+|.+.
T Consensus 350 L~deERG~RLdGLI~RLr~l~~~AQ~i~LSATV-gNp~elA~~l~a~lV~y~~RPVp------lErHlvf~~~e~eK~~i 422 (830)
T COG1202 350 LEDEERGPRLDGLIGRLRYLFPGAQFIYLSATV-GNPEELAKKLGAKLVLYDERPVP------LERHLVFARNESEKWDI 422 (830)
T ss_pred ccchhcccchhhHHHHHHHhCCCCeEEEEEeec-CChHHHHHHhCCeeEeecCCCCC------hhHeeeeecCchHHHHH
Confidence 87654444444333 3334789999999998 46788999988888776654433 233344444 7788888
Q ss_pred HHHHHHhc------cCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCcc
Q psy7557 831 LMEFFDNM------DEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASR 904 (936)
Q Consensus 831 l~~~l~~~------~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~ 904 (936)
+..+.+.- ....+++|||++|++.|..++..|...|.++..+|+||+..+|..++..|.++.+.++|+|.+++.
T Consensus 423 i~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~A 502 (830)
T COG1202 423 IARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAA 502 (830)
T ss_pred HHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhc
Confidence 77776542 244689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEE---ccC-CCChhhhHhhhhhccC
Q psy7557 905 GLDVPDLTHVIN---YDF-PSHIEEYVHRVGRTGE 935 (936)
Q Consensus 905 Gidip~v~~VI~---~d~-p~s~~~yiqr~GRaGR 935 (936)
|+|+|+-.+|+- .+. -.|+.+|.||.|||||
T Consensus 503 GVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGR 537 (830)
T COG1202 503 GVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGR 537 (830)
T ss_pred CCCCchHHHHHHHHHcccccCCHHHHHHHhcccCC
Confidence 999997655441 111 2478999999999999
No 130
>KOG0349|consensus
Probab=100.00 E-value=3.5e-37 Score=314.22 Aligned_cols=263 Identities=28% Similarity=0.461 Sum_probs=213.4
Q ss_pred CEEEEEecCHHHHHHHHHHHHhcc----CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceE
Q psy7557 671 PSVLVMAPTRELATQIEREVNKID----YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSF 746 (936)
Q Consensus 671 ~~~lil~Pt~~La~Q~~~~~~~~~----~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~ 746 (936)
|.++|+-|+||||.|.++++++|. .+.++...+.||.....|...+..|.+|+|+||+|+.+.+..+.+.+.++++
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crF 366 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRF 366 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEE
Confidence 458999999999999999888873 3456777889999999999999999999999999999999999999999999
Q ss_pred EEEcccchhccCCCHHHHHHHhhhcC------CCceEEEEEecCC-hHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEE
Q psy7557 747 VVLDEADRMLDLGFEPQINKTSIYIN------PNRQTVMTSATWN-KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKI 819 (936)
Q Consensus 747 lViDEah~l~~~~~~~~~~~i~~~~~------~~~q~v~~SAT~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 819 (936)
+|+||+|.++..++...+.++...++ ...|.+.+|||+. -++..+..+.+.-|..+.....+. ....+.+.+
T Consensus 367 lvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~-vpetvHhvv 445 (725)
T KOG0349|consen 367 LVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDL-VPETVHHVV 445 (725)
T ss_pred EEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccc-cchhhccce
Confidence 99999999999999988888877765 3579999999985 245566677777777766554432 222222222
Q ss_pred EEcCc------------------------------chhHHHHHHH---------HHhccCCCCcEEEEcCChHHHHHHHH
Q psy7557 820 IILDE------------------------------DEKKDWLMEF---------FDNMDEERDKVMVFMGRKASVSAMSS 860 (936)
Q Consensus 820 ~~~~~------------------------------~~k~~~l~~~---------l~~~~~~~~~~iIF~~s~~~~~~l~~ 860 (936)
..+.. .+...-...+ ++++ ...+.||||.|+..|+.|..
T Consensus 446 ~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h--~mdkaiifcrtk~dcDnLer 523 (725)
T KOG0349|consen 446 KLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH--AMDKAIIFCRTKQDCDNLER 523 (725)
T ss_pred eecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh--ccCceEEEEeccccchHHHH
Confidence 11110 0111111111 1222 34689999999999999999
Q ss_pred HHHhcC---CceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 861 DLACQY---RKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 861 ~L~~~~---~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
++.+.+ +.+.++||+..+.+|++.++.|+.+.++.|||||+++||+||.++-.+||..+|.+...|+||+||.||+
T Consensus 524 ~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 524 MMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred HHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchh
Confidence 999876 4788999999999999999999999999999999999999999999999999999999999999999996
No 131
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=1.4e-36 Score=347.74 Aligned_cols=320 Identities=19% Similarity=0.221 Sum_probs=234.5
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhc
Q psy7557 94 LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 173 (936)
Q Consensus 94 ~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 173 (936)
+|. .|+++|..+...+..| .++.++||+|||++|++|++...+ .++.++|++|+++||.|..+.+..+
T Consensus 67 lgl-rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL---------~g~~V~VVTpn~yLA~Rdae~m~~l 134 (762)
T TIGR03714 67 LGM-FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNAL---------TGKGAMLVTTNDYLAKRDAEEMGPV 134 (762)
T ss_pred cCC-CccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhh---------cCCceEEeCCCHHHHHHHHHHHHHH
Confidence 555 6666666666655555 699999999999999999876653 3556999999999999999999885
Q ss_pred -cCCCCEEEEEeCCcc---chHHHHHhhcCCcEEEeCCchh-HHHHHcC------CcCCCCceEEEEccchhhhc-CC--
Q psy7557 174 -DYKGLKAVCVYGGKE---IEPQLEKIREGCHILIATPGRL-NDFVSRA------SIDLKAVSFVVLDEADRMLD-LG-- 239 (936)
Q Consensus 174 -~~~~~~~~~~~gg~~---~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~------~~~~~~~~~lViDEah~l~~-~~-- 239 (936)
...|+++.+++++.. ..........+++|+++||+++ .+.+... ...+..+.++|+||||.|+- ..
T Consensus 135 ~~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeart 214 (762)
T TIGR03714 135 YEWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQT 214 (762)
T ss_pred HhhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcC
Confidence 567999988877632 3333344446799999999999 5555332 34477899999999999862 11
Q ss_pred -------------CHHHHHHHHhhcCCC--------C-------------------------------------------
Q psy7557 240 -------------FEPQINKTSIYINPN--------R------------------------------------------- 255 (936)
Q Consensus 240 -------------~~~~~~~i~~~~~~~--------~------------------------------------------- 255 (936)
+......+...+.++ .
T Consensus 215 pliisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~ 294 (762)
T TIGR03714 215 PLVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYL 294 (762)
T ss_pred CeeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHH
Confidence 111111222222110 0
Q ss_pred ------------------------------------------------------------------cEEEEEeccchHHH
Q psy7557 256 ------------------------------------------------------------------QTVMTSATWNKDVQ 269 (936)
Q Consensus 256 ------------------------------------------------------------------q~~~~SAT~~~~~~ 269 (936)
.+.+||.|......
T Consensus 295 ~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~ 374 (762)
T TIGR03714 295 FKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEK 374 (762)
T ss_pred HhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHH
Confidence 23344444433333
Q ss_pred HHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCce
Q psy7557 270 RVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKS 349 (936)
Q Consensus 270 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~ 349 (936)
++...|..+.+.|..... ....-....+++...+|...+.+.+......+.++||||+|+..++.++..|...++++
T Consensus 375 Ef~~iY~l~v~~IPt~kp---~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~ 451 (762)
T TIGR03714 375 EFIETYSLSVVKIPTNKP---IIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPH 451 (762)
T ss_pred HHHHHhCCCEEEcCCCCC---eeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCE
Confidence 343333322222211110 00001122466777889999998887765678899999999999999999999999999
Q ss_pred eeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCC---------CCcEEEEecCCCCccccccCCCCcccCCCce
Q psy7557 350 CSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVP---------DLTHVINYDFPSHIEEYVHRVGRTGRAGKSG 420 (936)
Q Consensus 350 ~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip---------~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g 420 (936)
..+||++.+.+|..+.+.++.| .|+||||+++||+||| ++.+|++|++|....+ +||+|||||.|.+|
T Consensus 452 ~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G 528 (762)
T TIGR03714 452 NLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPG 528 (762)
T ss_pred EEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCce
Confidence 9999999999998888878777 6999999999999999 9999999999988777 99999999999999
Q ss_pred eEEEEecccCh
Q psy7557 421 ESITLMTRKDW 431 (936)
Q Consensus 421 ~~~~~~~~~~~ 431 (936)
.+++|++..|.
T Consensus 529 ~s~~~is~eD~ 539 (762)
T TIGR03714 529 SSQFFVSLEDD 539 (762)
T ss_pred eEEEEEccchh
Confidence 99999998764
No 132
>KOG0351|consensus
Probab=100.00 E-value=2.4e-36 Score=354.66 Aligned_cols=330 Identities=23% Similarity=0.321 Sum_probs=264.0
Q ss_pred HHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHH
Q psy7557 90 QLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIERE 169 (936)
Q Consensus 90 ~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~ 169 (936)
.....|....+|-|.+||...+.|+|+++.+|||+||++||.+|++. .++..|||.|..+| |.++
T Consensus 256 l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l------------~~gitvVISPL~SL---m~DQ 320 (941)
T KOG0351|consen 256 LKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALL------------LGGVTVVISPLISL---MQDQ 320 (941)
T ss_pred HHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccc------------cCCceEEeccHHHH---HHHH
Confidence 34558999999999999999999999999999999999999999983 24589999999999 6666
Q ss_pred HHhccCCCCEEEEEeCCccchH---HHHHhhcC---CcEEEeCCchhHHHH--HcCCcCCCC---ceEEEEccchhhhcC
Q psy7557 170 VNKIDYKGLKAVCVYGGKEIEP---QLEKIREG---CHILIATPGRLNDFV--SRASIDLKA---VSFVVLDEADRMLDL 238 (936)
Q Consensus 170 ~~~~~~~~~~~~~~~gg~~~~~---~~~~~~~~---~~Iiv~Tp~~l~~~l--~~~~~~~~~---~~~lViDEah~l~~~ 238 (936)
+..+...+++...+.++..... .+..+..+ ++|+..|||++...- ......+.. +.++||||||++..|
T Consensus 321 v~~L~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqW 400 (941)
T KOG0351|consen 321 VTHLSKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQW 400 (941)
T ss_pred HHhhhhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhh
Confidence 6666677899999988877653 34455554 799999999985421 222223334 899999999999999
Q ss_pred C--CHHHHHHHHhhc--CCCCcEEEEEeccchHHHHHHHHh--cCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHH
Q psy7557 239 G--FEPQINKTSIYI--NPNRQTVMTSATWNKDVQRVAKKY--MVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLM 312 (936)
Q Consensus 239 ~--~~~~~~~i~~~~--~~~~q~~~~SAT~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 312 (936)
| |++.+.++.... .+...++++|||.+..++.-+-.. +.+|....... ...++...+..-........+.
T Consensus 401 gHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sf----nR~NL~yeV~~k~~~~~~~~~~ 476 (941)
T KOG0351|consen 401 GHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSF----NRPNLKYEVSPKTDKDALLDIL 476 (941)
T ss_pred cccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccC----CCCCceEEEEeccCccchHHHH
Confidence 8 999998875443 345899999999998887654443 34555332221 2334444443333223333333
Q ss_pred HHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCc
Q psy7557 313 EFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLT 392 (936)
Q Consensus 313 ~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~ 392 (936)
...... ......||||.++.+|+.++..|+..++.+..||+||+..+|..+.+.|..++++|+|||=++++|||.|+|+
T Consensus 477 ~~~~~~-~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR 555 (941)
T KOG0351|consen 477 EESKLR-HPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVR 555 (941)
T ss_pred HHhhhc-CCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCcee
Confidence 444433 5678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHHH
Q psy7557 393 HVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIP 439 (936)
Q Consensus 393 ~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~ 439 (936)
.||||.+|+|++.|+|-+|||||+|....|++|++..|...++.++.
T Consensus 556 ~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~ 602 (941)
T KOG0351|consen 556 FVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLT 602 (941)
T ss_pred EEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999998776665554
No 133
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.6e-35 Score=312.29 Aligned_cols=310 Identities=23% Similarity=0.240 Sum_probs=233.2
Q ss_pred CCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhcc-
Q psy7557 616 FTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID- 694 (936)
Q Consensus 616 ~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~- 694 (936)
.-+++.||......++.+ |.+++.|||-|||+++.+-+...+.. .++ ++|+++||+.|+.|..+.+.+..
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~-------~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ 83 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRW-------FGG-KVLFLAPTKPLVLQHAEFCRKVTG 83 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHh-------cCC-eEEEecCCchHHHHHHHHHHHHhC
Confidence 347899999988888875 99999999999999988877766532 234 89999999999999999999863
Q ss_pred CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHHHhhhcCCC
Q psy7557 695 YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPN 774 (936)
Q Consensus 695 ~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~~~~ 774 (936)
.+.-.++.++|....+.... +.....|+|+||+.+..-+..+.+++.++.++||||||+-.....+-.+.+-......+
T Consensus 84 ip~~~i~~ltGev~p~~R~~-~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~ 162 (542)
T COG1111 84 IPEDEIAALTGEVRPEEREE-LWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKN 162 (542)
T ss_pred CChhheeeecCCCChHHHHH-HHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccC
Confidence 44557788888777665544 44457999999999999999999999999999999999987766555555555555678
Q ss_pred ceEEEEEecCChH---HHHHHHHhcCCCeEEEeCCCCccc----------------------------------------
Q psy7557 775 RQTVMTSATWNKD---VQRVAKKYMVNPVKVNVGSLDLAA---------------------------------------- 811 (936)
Q Consensus 775 ~q~v~~SAT~~~~---~~~~~~~~~~~~~~i~~~~~~~~~---------------------------------------- 811 (936)
+.++++|||+-.+ +.+.++.+....+.+.........
T Consensus 163 ~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~ 242 (542)
T COG1111 163 PLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKEL 242 (542)
T ss_pred ceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 8899999996433 333333333332222111100000
Q ss_pred ------C------------------Cce-------------------------EE-------------------------
Q psy7557 812 ------T------------------HTV-------------------------TQ------------------------- 817 (936)
Q Consensus 812 ------~------------------~~~-------------------------~~------------------------- 817 (936)
. ... .|
T Consensus 243 g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~ 322 (542)
T COG1111 243 GVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAK 322 (542)
T ss_pred CceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHH
Confidence 0 000 00
Q ss_pred -----------------EEEEcCcchhHHHHHHHHHhcc--CCCCcEEEEcCChHHHHHHHHHHHhcCCceE-EEe----
Q psy7557 818 -----------------KIIILDEDEKKDWLMEFFDNMD--EERDKVMVFMGRKASVSAMSSDLACQYRKSC-SLY---- 873 (936)
Q Consensus 818 -----------------~~~~~~~~~k~~~l~~~l~~~~--~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~-~~h---- 873 (936)
....--...|+..+.+++.... ....++|||++.+.+|+.+...|...+..+. .+-
T Consensus 323 ~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~ 402 (542)
T COG1111 323 SLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQAS 402 (542)
T ss_pred HHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccc
Confidence 0000011233444444444443 3456899999999999999999999887774 332
Q ss_pred ----CCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccC
Q psy7557 874 ----GDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGE 935 (936)
Q Consensus 874 ----~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR 935 (936)
.||+|+++.++++.|++|..+|||||++.++|+|+|++++||.|++-.|...+|||.|||||
T Consensus 403 r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR 468 (542)
T COG1111 403 REGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGR 468 (542)
T ss_pred cccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCcccc
Confidence 47999999999999999999999999999999999999999999999999999999999999
No 134
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=1.4e-35 Score=326.92 Aligned_cols=357 Identities=19% Similarity=0.225 Sum_probs=288.8
Q ss_pred HHHHHhCCCCCCcHHHHHHHHHHhcC------CcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHH
Q psy7557 88 LRQLENLSFTTPSPIQAQAWPILMSG------HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRE 161 (936)
Q Consensus 88 ~~~l~~~g~~~~~~~Q~~ai~~~~~g------~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~ 161 (936)
.+.+..+.| +||..|.+++..|... ++-++.|..|||||++++++++..+ ..|.++..++||--
T Consensus 253 ~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai---------~~G~Q~ALMAPTEI 322 (677)
T COG1200 253 AKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAI---------EAGYQAALMAPTEI 322 (677)
T ss_pred HHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHH---------HcCCeeEEeccHHH
Confidence 345577889 8999999999998854 5789999999999999999998777 56889999999999
Q ss_pred HHHHHHHHHHhc-cCCCCEEEEEeCCcc---chHHHHHhhcC-CcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhh
Q psy7557 162 LATQIEREVNKI-DYKGLKAVCVYGGKE---IEPQLEKIREG-CHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRML 236 (936)
Q Consensus 162 La~Q~~~~~~~~-~~~~~~~~~~~gg~~---~~~~~~~~~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~ 236 (936)
||.|.++.+.++ ...|+++..++|... .......+.+| .+|+||| +.|.+..+.+.++.++|+||-||
T Consensus 323 LA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGT-----HALiQd~V~F~~LgLVIiDEQHR-- 395 (677)
T COG1200 323 LAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGT-----HALIQDKVEFHNLGLVIIDEQHR-- 395 (677)
T ss_pred HHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEc-----chhhhcceeecceeEEEEecccc--
Confidence 999999999995 567999999999644 44555677777 9999999 77778888999999999999999
Q ss_pred cCCCHHHHHHHHhhcCC-CCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHH
Q psy7557 237 DLGFEPQINKTSIYINP-NRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFF 315 (936)
Q Consensus 237 ~~~~~~~~~~i~~~~~~-~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l 315 (936)
|+..-+..+..... .+.+++||||+-|....+....-.|...|..-+.. ...+....+ . .++...+++.+
T Consensus 396 ---FGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~G---RkpI~T~~i--~-~~~~~~v~e~i 466 (677)
T COG1200 396 ---FGVHQRLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPG---RKPITTVVI--P-HERRPEVYERI 466 (677)
T ss_pred ---ccHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCC---CCceEEEEe--c-cccHHHHHHHH
Confidence 66666666665556 68999999998877765555443343333322221 122333322 2 23444455555
Q ss_pred HhccCCCCcEEEEeCchH--------HHHHHHHHhhhc--CCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccC
Q psy7557 316 DNMDEERDKVMVFMGRKA--------SVSAMSSDLACQ--YRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRG 385 (936)
Q Consensus 316 ~~~~~~~~~~iVF~~~~~--------~~~~l~~~L~~~--~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~G 385 (936)
......+.++.+.|+-.+ .|..+++.|... ++++..+||.|+..++.++++.|++|+++|||||.+.+.|
T Consensus 467 ~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVG 546 (677)
T COG1200 467 REEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVG 546 (677)
T ss_pred HHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEec
Confidence 544457899999998765 466777777744 3558899999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEecCCC-CccccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHhhcCCccchhhhhccccceeEee
Q psy7557 386 LDVPDLTHVINYDFPS-HIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEGGHESYMIWRRDSRIALHVIL 464 (936)
Q Consensus 386 iDip~v~~VI~~d~p~-s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 464 (936)
||+|+.++.|.+++-+ ..++..|-.||+||++..++|++++.+...+.+++.+++|.++. +.+.++..|.++++.+-.
T Consensus 547 VdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~t~-DGF~IAE~DLklRGpGe~ 625 (677)
T COG1200 547 VDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRETT-DGFVIAEEDLKLRGPGEL 625 (677)
T ss_pred ccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHhcC-CcceehhhhHhccCCccc
Confidence 9999999999999875 78899999999999999999999999988788899999999874 788899999999998888
Q ss_pred cCCceee
Q psy7557 465 EGGEEVV 471 (936)
Q Consensus 465 ~~~~~~~ 471 (936)
.|.+|++
T Consensus 626 lG~rQSG 632 (677)
T COG1200 626 LGTRQSG 632 (677)
T ss_pred cCCcccC
Confidence 8887765
No 135
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=1.1e-35 Score=338.02 Aligned_cols=319 Identities=21% Similarity=0.229 Sum_probs=243.5
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhc
Q psy7557 94 LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 173 (936)
Q Consensus 94 ~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 173 (936)
+|. .|+++|..+.+.+..|+ ++.++||+|||++|.+|++...+. |..+.|++||++||.|.++.+..+
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~---------G~~V~VvTpt~~LA~qdae~~~~l 120 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT---------GKGVHVVTVNDYLAQRDAEWMGQV 120 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh---------CCCEEEEcCCHHHHHHHHHHHHHH
Confidence 576 89999999999998887 999999999999999999755532 456999999999999999999995
Q ss_pred -cCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchh-HHHHHcC------CcCCCCceEEEEccchhhhc-CCCH---
Q psy7557 174 -DYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRL-NDFVSRA------SIDLKAVSFVVLDEADRMLD-LGFE--- 241 (936)
Q Consensus 174 -~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~------~~~~~~~~~lViDEah~l~~-~~~~--- 241 (936)
...|+++.+++||.+....... ..++|+||||++| .|++..+ ...++.+.++|+||+|+|+- ....
T Consensus 121 ~~~LGLsv~~i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLi 198 (745)
T TIGR00963 121 YRFLGLSVGLILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLI 198 (745)
T ss_pred hccCCCeEEEEeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHh
Confidence 5679999999999886544333 3489999999999 8888766 34678999999999999762 1100
Q ss_pred ------------HHHHHHHhhcCC--------CC----------------------------------------------
Q psy7557 242 ------------PQINKTSIYINP--------NR---------------------------------------------- 255 (936)
Q Consensus 242 ------------~~~~~i~~~~~~--------~~---------------------------------------------- 255 (936)
.....+...+.. ..
T Consensus 199 isg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~ 278 (745)
T TIGR00963 199 ISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEK 278 (745)
T ss_pred hcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhc
Confidence 000111111110 00
Q ss_pred ---------------------------------------------------------------cEEEEEeccchHHHHHH
Q psy7557 256 ---------------------------------------------------------------QTVMTSATWNKDVQRVA 272 (936)
Q Consensus 256 ---------------------------------------------------------------q~~~~SAT~~~~~~~~~ 272 (936)
.+.+||.|.......+.
T Consensus 279 d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~ 358 (745)
T TIGR00963 279 DVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFE 358 (745)
T ss_pred CCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHH
Confidence 23344444433333333
Q ss_pred HHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeee
Q psy7557 273 KKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSL 352 (936)
Q Consensus 273 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~ 352 (936)
..|..+.+.|...... ...-....++....+|...+.+.+......+.++||||+++..++.++..|...++++..+
T Consensus 359 ~iY~l~vv~IPtnkp~---~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~L 435 (745)
T TIGR00963 359 KIYNLEVVVVPTNRPV---IRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVL 435 (745)
T ss_pred HHhCCCEEEeCCCCCe---eeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEe
Confidence 3333332222111110 0001112345556678888887776666778999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCC-------CcEEEEecCCCCccccccCCCCcccCCCceeEEEE
Q psy7557 353 YGDLSQEDREIALEDITSGYARICVATDVASRGLDVPD-------LTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITL 425 (936)
Q Consensus 353 h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~-------v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~ 425 (936)
||. +.+|+..+..|+.+...|+|||++++||+||+. ..+||+++.|.|...|.||+|||||.|.+|.+.+|
T Consensus 436 na~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ 513 (745)
T TIGR00963 436 NAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFF 513 (745)
T ss_pred eCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEE
Confidence 998 889999999999999999999999999999998 55999999999999999999999999999999999
Q ss_pred ecccCh
Q psy7557 426 MTRKDW 431 (936)
Q Consensus 426 ~~~~~~ 431 (936)
++..|.
T Consensus 514 ls~eD~ 519 (745)
T TIGR00963 514 LSLEDN 519 (745)
T ss_pred EeccHH
Confidence 998863
No 136
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=1e-35 Score=341.89 Aligned_cols=299 Identities=16% Similarity=0.151 Sum_probs=220.1
Q ss_pred CCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhccC
Q psy7557 616 FTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDY 695 (936)
Q Consensus 616 ~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 695 (936)
...|+|+|.+|++.++.+++.++++|||+|||+++...+ ..... ....++|||+||++|+.|+.+.++++..
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~-~~~~~-------~~~~~vLilvpt~eL~~Q~~~~l~~~~~ 183 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLS-RYYLE-------NYEGKVLIIVPTTSLVTQMIDDFVDYRL 183 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH-HHHHh-------cCCCeEEEEECcHHHHHHHHHHHHHhcc
Confidence 358999999999999999999999999999999765422 22211 2234899999999999999999999753
Q ss_pred -CCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHHHhhhcCCC
Q psy7557 696 -KGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPN 774 (936)
Q Consensus 696 -~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~~~~ 774 (936)
....+..+.||.... .+++|+|+||+++.+... ..++++++||+||||++.... +..+...+++.
T Consensus 184 ~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~~----~~~il~~~~~~ 249 (501)
T PHA02558 184 FPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGKS----LTSIITKLDNC 249 (501)
T ss_pred ccccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccchh----HHHHHHhhhcc
Confidence 234555667765433 347999999999876432 246889999999999987643 45555666667
Q ss_pred ceEEEEEecCChHHHHHHH-HhcCCCeEEEeCCCCcccCC--------------------c-----eEEEE-EEcCcchh
Q psy7557 775 RQTVMTSATWNKDVQRVAK-KYMVNPVKVNVGSLDLAATH--------------------T-----VTQKI-IILDEDEK 827 (936)
Q Consensus 775 ~q~v~~SAT~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~--------------------~-----~~~~~-~~~~~~~k 827 (936)
+++++||||++........ ..+-.|+...+...+..... . ....+ .......+
T Consensus 250 ~~~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~R 329 (501)
T PHA02558 250 KFKFGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKR 329 (501)
T ss_pred ceEEEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHH
Confidence 8999999998643221111 00111222211110000000 0 00000 11223344
Q ss_pred HHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEec-ccCccCC
Q psy7557 828 KDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVAT-DVASRGL 906 (936)
Q Consensus 828 ~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT-~~~~~Gi 906 (936)
...+..++......+.+++|||++.++++.+++.|...+.++..+||+|++++|..+++.|++|+..||||| +++++|+
T Consensus 330 n~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~ 409 (501)
T PHA02558 330 NKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGI 409 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecccc
Confidence 455555555554456789999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred CCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 907 DVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 907 dip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
|+|++++||++++|.|...|+||+||+||.
T Consensus 410 Dip~ld~vIl~~p~~s~~~~~QriGR~~R~ 439 (501)
T PHA02558 410 SIKNLHHVIFAHPSKSKIIVLQSIGRVLRK 439 (501)
T ss_pred ccccccEEEEecCCcchhhhhhhhhccccC
Confidence 999999999999999999999999999994
No 137
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=9.7e-36 Score=331.63 Aligned_cols=286 Identities=19% Similarity=0.171 Sum_probs=202.9
Q ss_pred cEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhccCCCCEEEEEECCccch----
Q psy7557 635 DMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELE---- 710 (936)
Q Consensus 635 d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~---- 710 (936)
++++.||||||||++|++|++..+.. ..+.+++|++|+++|+.|+++.+..+... .+..++|+....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~-------~~~~~ii~v~P~~~L~~q~~~~l~~~f~~--~~~~~~~~~~~~~~~~ 71 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS-------QKADRVIIALPTRATINAMYRRAKELFGS--NLGLLHSSSSFKRIKE 71 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh-------CCCCeEEEEeehHHHHHHHHHHHHHHhCc--ccEEeeccHHHHHHhc
Confidence 68999999999999999999876532 34679999999999999999999986322 344444433210
Q ss_pred --------HHHHHHh------cCceEEEeCchHHHHHHHcCC----CCC--CCceEEEEcccchhccCCCHHHHHHHhhh
Q psy7557 711 --------PQLEKIR------EGCHILIATPGRLNDFVSRAS----IDL--KAVSFVVLDEADRMLDLGFEPQINKTSIY 770 (936)
Q Consensus 711 --------~~~~~l~------~~~~IiV~Tp~~l~~~l~~~~----~~~--~~i~~lViDEah~l~~~~~~~~~~~i~~~ 770 (936)
....... ..++|+|+||+++...+..+. ..+ -..+++||||||.+.+.++.. +..+...
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~ 150 (358)
T TIGR01587 72 MGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEV 150 (358)
T ss_pred cCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHH
Confidence 0001110 126799999999988766521 111 123789999999998765444 4444433
Q ss_pred c-CCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEc--CcchhHHHHHHHHHhccCCCCcEEE
Q psy7557 771 I-NPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIIL--DEDEKKDWLMEFFDNMDEERDKVMV 847 (936)
Q Consensus 771 ~-~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~k~~~l~~~l~~~~~~~~~~iI 847 (936)
+ ..+.|++++|||+|..+..++..+...+......... ......+.+..+ ....+...+..++... ...+++||
T Consensus 151 l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~lV 227 (358)
T TIGR01587 151 LKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKE--ERRFERHRFIKIESDKVGEISSLERLLEFI-KKGGKIAI 227 (358)
T ss_pred HHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCcc--ccccccccceeeccccccCHHHHHHHHHHh-hCCCeEEE
Confidence 3 3578999999999977777666554332211111100 000112222222 1234455555555544 34679999
Q ss_pred EcCChHHHHHHHHHHHhcCC--ceEEEeCCCCHHHHHHH----HHHhhcCCCcEEEecccCccCCCCCCCCEEEEccCCC
Q psy7557 848 FMGRKASVSAMSSDLACQYR--KSCSLYGDLSQEDREIA----LEDITSGYARICVATDVASRGLDVPDLTHVINYDFPS 921 (936)
Q Consensus 848 F~~s~~~~~~l~~~L~~~~~--~~~~~h~~l~~~~R~~~----~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~p~ 921 (936)
||+++++|+.++..|...+. .+..+||+|++.+|..+ ++.|++|+.+|||||+++++|+|++ +++||++..|
T Consensus 228 f~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~- 305 (358)
T TIGR01587 228 IVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP- 305 (358)
T ss_pred EECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC-
Confidence 99999999999999988776 48999999999999764 8899999999999999999999995 8999999887
Q ss_pred ChhhhHhhhhhccCC
Q psy7557 922 HIEEYVHRVGRTGEF 936 (936)
Q Consensus 922 s~~~yiqr~GRaGR~ 936 (936)
.++|+||+||+||.
T Consensus 306 -~~~~iqr~GR~gR~ 319 (358)
T TIGR01587 306 -IDSLIQRLGRLHRY 319 (358)
T ss_pred -HHHHHHHhccccCC
Confidence 78999999999994
No 138
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.3e-34 Score=342.79 Aligned_cols=286 Identities=20% Similarity=0.285 Sum_probs=217.9
Q ss_pred HHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc-c-CCCCEEEE
Q psy7557 625 QAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI-D-YKGLKAVC 702 (936)
Q Consensus 625 ~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~-~-~~~~~~~~ 702 (936)
+.+..+.++++++++|+||||||++|.+|++... ..+++++|+.|||++|.|+++++.+. + ..+..+..
T Consensus 9 ~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~---------~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy 79 (819)
T TIGR01970 9 ALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAP---------GIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGY 79 (819)
T ss_pred HHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhh---------ccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEE
Confidence 4445566778999999999999999999988654 13468999999999999999998653 2 23455555
Q ss_pred EECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccc-hhccCCCHHH-HHHHhhhcCCCceEEEE
Q psy7557 703 VYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEAD-RMLDLGFEPQ-INKTSIYINPNRQTVMT 780 (936)
Q Consensus 703 ~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah-~l~~~~~~~~-~~~i~~~~~~~~q~v~~ 780 (936)
.+++.. ....+.+|+|+|||+|.+++.+. ..++++++|||||+| ++++.++.-. +..+...++++.|+++|
T Consensus 80 ~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlm 152 (819)
T TIGR01970 80 RVRGEN------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAM 152 (819)
T ss_pred EEcccc------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEE
Confidence 555432 12345799999999999988764 468999999999999 5777665433 34455667889999999
Q ss_pred EecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhH-----HHHHHHHHhccCCCCcEEEEcCChHHH
Q psy7557 781 SATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKK-----DWLMEFFDNMDEERDKVMVFMGRKASV 855 (936)
Q Consensus 781 SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~-----~~l~~~l~~~~~~~~~~iIF~~s~~~~ 855 (936)
|||++... ...++.++..+.+.... ..+.+.+.......+. ..+..++. ...+.+|||++++.++
T Consensus 153 SATl~~~~---l~~~l~~~~vI~~~gr~----~pVe~~y~~~~~~~~~~~~v~~~l~~~l~---~~~g~iLVFlpg~~eI 222 (819)
T TIGR01970 153 SATLDGER---LSSLLPDAPVVESEGRS----FPVEIRYLPLRGDQRLEDAVSRAVEHALA---SETGSILVFLPGQAEI 222 (819)
T ss_pred eCCCCHHH---HHHHcCCCcEEEecCcc----eeeeeEEeecchhhhHHHHHHHHHHHHHH---hcCCcEEEEECCHHHH
Confidence 99998653 34566555555544322 2244444433333322 12223332 2357899999999999
Q ss_pred HHHHHHHHh---cCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEEccCCC-----------
Q psy7557 856 SAMSSDLAC---QYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPS----------- 921 (936)
Q Consensus 856 ~~l~~~L~~---~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~p~----------- 921 (936)
+.++..|.. .++.+..+||+|++++|..+++.|++|+.+|||||+++++|||||+|++||++++|.
T Consensus 223 ~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~ 302 (819)
T TIGR01970 223 RRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGIT 302 (819)
T ss_pred HHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCc
Confidence 999999987 367889999999999999999999999999999999999999999999999999985
Q ss_pred -------ChhhhHhhhhhccCC
Q psy7557 922 -------HIEEYVHRVGRTGEF 936 (936)
Q Consensus 922 -------s~~~yiqr~GRaGR~ 936 (936)
|..+|+||+|||||.
T Consensus 303 ~L~~~~iSkasa~QR~GRAGR~ 324 (819)
T TIGR01970 303 RLETVRISQASATQRAGRAGRL 324 (819)
T ss_pred eeeEEEECHHHHHhhhhhcCCC
Confidence 234689999999994
No 139
>KOG0952|consensus
Probab=100.00 E-value=3e-35 Score=331.13 Aligned_cols=319 Identities=20% Similarity=0.262 Sum_probs=238.3
Q ss_pred HhCCCCCCcHHHHHHHHhhh-cCCcEEEEecCCCCcchhhHHHHHHHhhccCC-CCccCCCCEEEEEecCHHHHHHHHHH
Q psy7557 612 ENLSFTTPSPIQAQAWPILM-SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTT-PISERAGPSVLVMAPTRELATQIERE 689 (936)
Q Consensus 612 ~~~g~~~p~~iQ~~ai~~~l-~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~-~~~~~~~~~~lil~Pt~~La~Q~~~~ 689 (936)
.-++|++++.+|+.++|.++ ++.|+|+|||||||||-.|+|.++..+..... ......+.+++||+|+++||..+.+.
T Consensus 104 ~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~ 183 (1230)
T KOG0952|consen 104 GFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDK 183 (1230)
T ss_pred hcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHH
Confidence 34688999999999999998 56799999999999999999999988764211 11224678999999999999999888
Q ss_pred HHh-ccCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCC---CCCCCceEEEEcccchhccCCCHHHHH
Q psy7557 690 VNK-IDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRAS---IDLKAVSFVVLDEADRMLDLGFEPQIN 765 (936)
Q Consensus 690 ~~~-~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~---~~~~~i~~lViDEah~l~~~~~~~~~~ 765 (936)
+.+ +...|+++..++|+....... + ..++|+|+|||+|.-..+++. ..++.+++|||||+|.+-+ ...+.++
T Consensus 184 ~~kkl~~~gi~v~ELTGD~ql~~te--i-~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd-~RGpvlE 259 (1230)
T KOG0952|consen 184 FSKKLAPLGISVRELTGDTQLTKTE--I-ADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHD-DRGPVLE 259 (1230)
T ss_pred HhhhcccccceEEEecCcchhhHHH--H-HhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcC-cccchHH
Confidence 855 677799999999987765543 2 348999999999965554442 2468899999999997654 3455555
Q ss_pred HHhhhc-------CCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcc---hhHH----HH
Q psy7557 766 KTSIYI-------NPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDED---EKKD----WL 831 (936)
Q Consensus 766 ~i~~~~-------~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~k~~----~l 831 (936)
.|..++ ....++|++|||+| +..+++.++..+|..-.......-.+-.+.+.++-++.. .+.+ ..
T Consensus 260 tiVaRtlr~vessqs~IRivgLSATlP-N~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~ 338 (1230)
T KOG0952|consen 260 TIVARTLRLVESSQSMIRIVGLSATLP-NYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVC 338 (1230)
T ss_pred HHHHHHHHHHHhhhhheEEEEeeccCC-CHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHH
Confidence 554433 35679999999996 788999988777532222222222233344444443332 1111 12
Q ss_pred HHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcC-----------------------CceEEEeCCCCHHHHHHHHHHh
Q psy7557 832 MEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQY-----------------------RKSCSLYGDLSQEDREIALEDI 888 (936)
Q Consensus 832 ~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~-----------------------~~~~~~h~~l~~~~R~~~~~~F 888 (936)
++-.......+.+++|||.++..+...|..|.+.. .+.+.||+||...+|..+++.|
T Consensus 339 ~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F 418 (1230)
T KOG0952|consen 339 YDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEF 418 (1230)
T ss_pred HHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHH
Confidence 22223334567899999999999999999887421 3567899999999999999999
Q ss_pred hcCCCcEEEecccCccCCCCCCCCEEEE----ccCCC------ChhhhHhhhhhccC
Q psy7557 889 TSGYARICVATDVASRGLDVPDLTHVIN----YDFPS------HIEEYVHRVGRTGE 935 (936)
Q Consensus 889 ~~g~~~vLVaT~~~~~Gidip~v~~VI~----~d~p~------s~~~yiqr~GRaGR 935 (936)
..|.++||+||++++||+|+|+--++|- ||... .+-+.+|..|||||
T Consensus 419 ~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGR 475 (1230)
T KOG0952|consen 419 KEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGR 475 (1230)
T ss_pred hcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCC
Confidence 9999999999999999999998766663 55443 46778999999999
No 140
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=1.8e-34 Score=353.74 Aligned_cols=292 Identities=20% Similarity=0.271 Sum_probs=221.3
Q ss_pred HHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHH
Q psy7557 606 EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQ 685 (936)
Q Consensus 606 ~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q 685 (936)
++.+.+.+.....|+|+|..++|.++.|+|++++||||||||+ |.+|+...+. ..++++|||+||++||.|
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~--------~~g~~vLIL~PTreLa~Q 136 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLA--------KKGKRCYIILPTTLLVIQ 136 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHH--------hcCCeEEEEeCHHHHHHH
Confidence 3455565544448999999999999999999999999999997 6677665542 236899999999999999
Q ss_pred HHHHHHhccC-CCCEE---EEEECCccchHHH---HHHhc-CceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhcc
Q psy7557 686 IEREVNKIDY-KGLKA---VCVYGGKELEPQL---EKIRE-GCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLD 757 (936)
Q Consensus 686 ~~~~~~~~~~-~~~~~---~~~~gg~~~~~~~---~~l~~-~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~ 757 (936)
+.+.++.+.. .++.+ ..++||.+...+. ..+.+ +++|+|+||+++.+.+.... . +++++|+||||+|++
T Consensus 137 i~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 137 VAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDVDALLK 213 (1171)
T ss_pred HHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeChHhhhh
Confidence 9999999852 34443 3467887765542 33444 48999999999988776522 2 899999999999998
Q ss_pred -----------CCCHHH-HHHHh----------------------hhcCCCce--EEEEEec-CChHHHHHHHHhcCCCe
Q psy7557 758 -----------LGFEPQ-INKTS----------------------IYINPNRQ--TVMTSAT-WNKDVQRVAKKYMVNPV 800 (936)
Q Consensus 758 -----------~~~~~~-~~~i~----------------------~~~~~~~q--~v~~SAT-~~~~~~~~~~~~~~~~~ 800 (936)
.||... +..++ ..++..+| ++++||| +|..+.. .++.++.
T Consensus 214 ~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll 290 (1171)
T TIGR01054 214 ASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELL 290 (1171)
T ss_pred ccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHccccc
Confidence 678764 44432 22344455 6779999 5654432 3455666
Q ss_pred EEEeCCCCcccCCceEEEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCCh---HHHHHHHHHHHhcCCceEEEeCCCC
Q psy7557 801 KVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRK---ASVSAMSSDLACQYRKSCSLYGDLS 877 (936)
Q Consensus 801 ~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~---~~~~~l~~~L~~~~~~~~~~h~~l~ 877 (936)
.+.++... ....++.+.+..... +...+.+++... .+++||||+++ +.|+.++..|...|+++..+||+|+
T Consensus 291 ~~~v~~~~-~~~r~I~~~~~~~~~--~~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~ 364 (1171)
T TIGR01054 291 GFEVGGGS-DTLRNVVDVYVEDED--LKETLLEIVKKL---GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP 364 (1171)
T ss_pred ceEecCcc-ccccceEEEEEeccc--HHHHHHHHHHHc---CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC
Confidence 66665543 233445565544433 245566777654 35799999999 9999999999999999999999997
Q ss_pred HHHHHHHHHHhhcCCCcEEEe----cccCccCCCCCC-CCEEEEccCCCC
Q psy7557 878 QEDREIALEDITSGYARICVA----TDVASRGLDVPD-LTHVINYDFPSH 922 (936)
Q Consensus 878 ~~~R~~~~~~F~~g~~~vLVa----T~~~~~Gidip~-v~~VI~~d~p~s 922 (936)
+ .+++.|++|+++|||| |++++||||+|+ |++||+||+|..
T Consensus 365 ~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 365 K----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred H----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCE
Confidence 3 6899999999999999 599999999999 899999999953
No 141
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.8e-34 Score=327.08 Aligned_cols=304 Identities=22% Similarity=0.205 Sum_probs=236.1
Q ss_pred CCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc
Q psy7557 614 LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693 (936)
Q Consensus 614 ~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 693 (936)
+|. .|+|+|..++|.++.|+ |+.+.||+|||++|.+|++... ..|+.++|++||++||.|.++.+..+
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~a---------l~G~~v~VvTptreLA~qdae~~~~l 167 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAA---------LAGLPVHVITVNDYLAERDAELMRPL 167 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHh---------hcCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 577 89999999999999999 9999999999999999999765 24789999999999999999999986
Q ss_pred -cCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHH-HHHHHcCC-------------------------CCCCCceE
Q psy7557 694 -DYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRL-NDFVSRAS-------------------------IDLKAVSF 746 (936)
Q Consensus 694 -~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l-~~~l~~~~-------------------------~~~~~i~~ 746 (936)
...++++++++||.+. +......++||+|+|...+ .++++.+- ...+.+.+
T Consensus 168 ~~~lGlsv~~i~gg~~~--~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~ 245 (656)
T PRK12898 168 YEALGLTVGCVVEDQSP--DERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHF 245 (656)
T ss_pred HhhcCCEEEEEeCCCCH--HHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccce
Confidence 4679999999999753 4455567899999999887 33443221 11356789
Q ss_pred EEEcccchhc-cCC-----------------CHHHHH--------------------------------HHhhhcC----
Q psy7557 747 VVLDEADRML-DLG-----------------FEPQIN--------------------------------KTSIYIN---- 772 (936)
Q Consensus 747 lViDEah~l~-~~~-----------------~~~~~~--------------------------------~i~~~~~---- 772 (936)
.||||+|.++ |.. +..... .+...++
T Consensus 246 aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~ 325 (656)
T PRK12898 246 AIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWR 325 (656)
T ss_pred eEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcc
Confidence 9999999654 100 000000 0000000
Q ss_pred --------------------C-----------------------C-----------------------------------
Q psy7557 773 --------------------P-----------------------N----------------------------------- 774 (936)
Q Consensus 773 --------------------~-----------------------~----------------------------------- 774 (936)
. +
T Consensus 326 ~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~F 405 (656)
T PRK12898 326 GAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFF 405 (656)
T ss_pred cchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHH
Confidence 0 0
Q ss_pred ---ceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCC
Q psy7557 775 ---RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGR 851 (936)
Q Consensus 775 ---~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s 851 (936)
..+.+||||.+.....+...|..+++.+-..... .....+.+++++...|...+.+.+........++||||+|
T Consensus 406 r~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~---~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t 482 (656)
T PRK12898 406 RRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS---QRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRS 482 (656)
T ss_pred HhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc---cceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 1677999999887788888888887766544322 2223344567778889999999888765556789999999
Q ss_pred hHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCC---CCC-----EEEEccCCCCh
Q psy7557 852 KASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVP---DLT-----HVINYDFPSHI 923 (936)
Q Consensus 852 ~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip---~v~-----~VI~~d~p~s~ 923 (936)
+..++.++..|...++++..+||++.+ |+..+..|+.+...|+|||++++||+||+ +|. +||+|++|.|.
T Consensus 483 ~~~se~L~~~L~~~gi~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~ 560 (656)
T PRK12898 483 VAASERLSALLREAGLPHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSA 560 (656)
T ss_pred HHHHHHHHHHHHHCCCCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCH
Confidence 999999999999999999999998654 45555556666668999999999999999 676 99999999999
Q ss_pred hhhHhhhhhccCC
Q psy7557 924 EEYVHRVGRTGEF 936 (936)
Q Consensus 924 ~~yiqr~GRaGR~ 936 (936)
..|+||+|||||.
T Consensus 561 r~y~hr~GRTGRq 573 (656)
T PRK12898 561 RIDRQLAGRCGRQ 573 (656)
T ss_pred HHHHHhcccccCC
Confidence 9999999999995
No 142
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=2.8e-34 Score=340.87 Aligned_cols=286 Identities=19% Similarity=0.301 Sum_probs=216.7
Q ss_pred HHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc-c-CCCCEEEE
Q psy7557 625 QAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI-D-YKGLKAVC 702 (936)
Q Consensus 625 ~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~-~-~~~~~~~~ 702 (936)
+.+..+.++++++++||||||||++|.+|++... ..+++++|++|||++|.|+++.+... + ..+..+..
T Consensus 12 ~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~---------~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy 82 (812)
T PRK11664 12 ELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHG---------GINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGY 82 (812)
T ss_pred HHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcC---------CcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEE
Confidence 3445555788999999999999999999988543 12348999999999999999998653 2 34566776
Q ss_pred EECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccch-hccCCC-HHHHHHHhhhcCCCceEEEE
Q psy7557 703 VYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADR-MLDLGF-EPQINKTSIYINPNRQTVMT 780 (936)
Q Consensus 703 ~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~-l~~~~~-~~~~~~i~~~~~~~~q~v~~ 780 (936)
.+++.... ....+|+|+|||++.+++.+. ..++++++|||||+|. .++.++ ...+..+...++++.|+++|
T Consensus 83 ~vr~~~~~------~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilm 155 (812)
T PRK11664 83 RMRAESKV------GPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIM 155 (812)
T ss_pred EecCcccc------CCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEE
Confidence 66665422 124689999999999988764 4689999999999996 444433 22334455667789999999
Q ss_pred EecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHH-----HHHHHHHhccCCCCcEEEEcCChHHH
Q psy7557 781 SATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKD-----WLMEFFDNMDEERDKVMVFMGRKASV 855 (936)
Q Consensus 781 SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~-----~l~~~l~~~~~~~~~~iIF~~s~~~~ 855 (936)
|||++.. .+ ..++.++..+.+.... ..+.+.+.......+.. .+..++. ...+.+|||++++.++
T Consensus 156 SATl~~~--~l-~~~~~~~~~I~~~gr~----~pV~~~y~~~~~~~~~~~~v~~~l~~~l~---~~~g~iLVFlpg~~ei 225 (812)
T PRK11664 156 SATLDND--RL-QQLLPDAPVIVSEGRS----FPVERRYQPLPAHQRFDEAVARATAELLR---QESGSLLLFLPGVGEI 225 (812)
T ss_pred ecCCCHH--HH-HHhcCCCCEEEecCcc----ccceEEeccCchhhhHHHHHHHHHHHHHH---hCCCCEEEEcCCHHHH
Confidence 9999864 23 4566555555443321 23444444444333332 2222222 2357899999999999
Q ss_pred HHHHHHHHh---cCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEEccCCC-----------
Q psy7557 856 SAMSSDLAC---QYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPS----------- 921 (936)
Q Consensus 856 ~~l~~~L~~---~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~p~----------- 921 (936)
+.++..|.. .++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||||+|++||++++|.
T Consensus 226 ~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~ 305 (812)
T PRK11664 226 QRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLT 305 (812)
T ss_pred HHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcc
Confidence 999999986 467788999999999999999999999999999999999999999999999988774
Q ss_pred -------ChhhhHhhhhhccCC
Q psy7557 922 -------HIEEYVHRVGRTGEF 936 (936)
Q Consensus 922 -------s~~~yiqr~GRaGR~ 936 (936)
|..+|+||+|||||.
T Consensus 306 ~L~~~~iSkasa~QR~GRaGR~ 327 (812)
T PRK11664 306 RLVTQRISQASMTQRAGRAGRL 327 (812)
T ss_pred eeEEEeechhhhhhhccccCCC
Confidence 335899999999994
No 143
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=7.1e-34 Score=312.07 Aligned_cols=291 Identities=20% Similarity=0.171 Sum_probs=202.9
Q ss_pred HHHHHHHhhhcCCc--EEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhcc-----
Q psy7557 622 IQAQAWPILMSGHD--MIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID----- 694 (936)
Q Consensus 622 iQ~~ai~~~l~g~d--~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~----- 694 (936)
+|.++++.+..+++ ++++||||||||++|++|++. .+.+++|++|+++|+.|+++.++.+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~------------~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~ 68 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH------------GENDTIALYPTNALIEDQTEAIKEFVDVFKP 68 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH------------cCCCEEEEeChHHHHHHHHHHHHHHHHhcCC
Confidence 59999999998874 788999999999999999883 13468999999999999999988863
Q ss_pred CCCCEEEEEECCccch--HHH------------------HHHhcCceEEEeCchHHHHHHHcCCC--------CCCCceE
Q psy7557 695 YKGLKAVCVYGGKELE--PQL------------------EKIREGCHILIATPGRLNDFVSRASI--------DLKAVSF 746 (936)
Q Consensus 695 ~~~~~~~~~~gg~~~~--~~~------------------~~l~~~~~IiV~Tp~~l~~~l~~~~~--------~~~~i~~ 746 (936)
..+..+..+.|....+ ... ......++|+++||+.|..+++++.. .+..+++
T Consensus 69 ~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~ 148 (357)
T TIGR03158 69 ERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFST 148 (357)
T ss_pred CCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCE
Confidence 1345555555542111 000 00123578999999999877654311 2578999
Q ss_pred EEEcccchhccCCC-----HHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHh--cCCCeEEEeCCC-----------C
Q psy7557 747 VVLDEADRMLDLGF-----EPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKY--MVNPVKVNVGSL-----------D 808 (936)
Q Consensus 747 lViDEah~l~~~~~-----~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~--~~~~~~i~~~~~-----------~ 808 (936)
+||||+|.+..++. ......+........+++++|||+++.+...+... +..|+....+.. .
T Consensus 149 iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~ 228 (357)
T TIGR03158 149 VIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEAD 228 (357)
T ss_pred EEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhcc
Confidence 99999998765331 11223333333345799999999998877777654 444543322220 0
Q ss_pred cc------cCCceEEEEEEcCcchhHHHHHHHHHhc---c--CCCCcEEEEcCChHHHHHHHHHHHhcC--CceEEEeCC
Q psy7557 809 LA------ATHTVTQKIIILDEDEKKDWLMEFFDNM---D--EERDKVMVFMGRKASVSAMSSDLACQY--RKSCSLYGD 875 (936)
Q Consensus 809 ~~------~~~~~~~~~~~~~~~~k~~~l~~~l~~~---~--~~~~~~iIF~~s~~~~~~l~~~L~~~~--~~~~~~h~~ 875 (936)
.. ....+.+.+.. ....+...+..++... . ...+++||||+|+..++.++..|...+ ..+..+||.
T Consensus 229 ~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~ 307 (357)
T TIGR03158 229 NKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGF 307 (357)
T ss_pred ccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecC
Confidence 00 00133333333 3333443333322222 1 245789999999999999999998764 467889999
Q ss_pred CCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhcc
Q psy7557 876 LSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934 (936)
Q Consensus 876 l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaG 934 (936)
+++.+|.++ ++.+|||||++++||||+|.+ +|| ++ |.+.++|+||+||+|
T Consensus 308 ~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 308 APKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 999998754 478999999999999999986 666 45 899999999999998
No 144
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=6.7e-34 Score=312.24 Aligned_cols=291 Identities=19% Similarity=0.168 Sum_probs=202.9
Q ss_pred HHHHHHHHHhcCCc--EEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhcc-----
Q psy7557 102 IQAQAWPILMSGHD--MIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID----- 174 (936)
Q Consensus 102 ~Q~~ai~~~~~g~d--~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~----- 174 (936)
+|.++++.+.++++ ++++||||||||.+|++|++.. +.+++|++|+++|+.|+++.++.+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~------------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~ 68 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------------ENDTIALYPTNALIEDQTEAIKEFVDVFKP 68 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc------------CCCEEEEeChHHHHHHHHHHHHHHHHhcCC
Confidence 49999999998874 7889999999999999998731 2357999999999999999988853
Q ss_pred CCCCEEEEEeCCccch--HHH-----------------H-HhhcCCcEEEeCCchhHHHHHcCC--------cCCCCceE
Q psy7557 175 YKGLKAVCVYGGKEIE--PQL-----------------E-KIREGCHILIATPGRLNDFVSRAS--------IDLKAVSF 226 (936)
Q Consensus 175 ~~~~~~~~~~gg~~~~--~~~-----------------~-~~~~~~~Iiv~Tp~~l~~~l~~~~--------~~~~~~~~ 226 (936)
..+..+..+.|..... ... . .....++|+++||+.|..++.... ..+..+++
T Consensus 69 ~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~ 148 (357)
T TIGR03158 69 ERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFST 148 (357)
T ss_pred CCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCE
Confidence 1355666665542111 000 0 012358899999999966554321 12578999
Q ss_pred EEEccchhhhcCCC-----HHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHh--cCCCEEEEeCCC----C-----cc
Q psy7557 227 VVLDEADRMLDLGF-----EPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKY--MVNPVKVNVGSL----D-----LA 290 (936)
Q Consensus 227 lViDEah~l~~~~~-----~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~--~~~~~~i~~~~~----~-----~~ 290 (936)
+|+||+|.+..++. ......+........+++++|||+++.+...+... +..++....+.. + ..
T Consensus 149 iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~ 228 (357)
T TIGR03158 149 VIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEAD 228 (357)
T ss_pred EEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhcc
Confidence 99999999765431 11223333333345799999999999887777765 455543322220 0 00
Q ss_pred --------cCCceEEEEEEeCchhhHHHHHHHHHhc----c-CCCCcEEEEeCchHHHHHHHHHhhhcC--CceeeecCC
Q psy7557 291 --------ATHTVTQKIIILDEDEKKDWLMEFFDNM----D-EERDKVMVFMGRKASVSAMSSDLACQY--RKSCSLYGD 355 (936)
Q Consensus 291 --------~~~~~~~~~~~~~~~~k~~~l~~~l~~~----~-~~~~~~iVF~~~~~~~~~l~~~L~~~~--~~~~~~h~~ 355 (936)
....+.+.+.. ....+...+..++... . ..++++||||+|+..++.++..|+..+ ..+..+||.
T Consensus 229 ~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~ 307 (357)
T TIGR03158 229 NKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGF 307 (357)
T ss_pred ccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecC
Confidence 00134444443 3333333333222221 1 246799999999999999999999764 567889999
Q ss_pred CCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcc
Q psy7557 356 LSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 414 (936)
Q Consensus 356 ~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRag 414 (936)
+++.+|.++ ++.+|||||++++||||+|.+ +|| ++ |.+.++|+||+||+|
T Consensus 308 ~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 308 APKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 999998755 478999999999999999987 566 55 899999999999997
No 145
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=5.7e-34 Score=338.48 Aligned_cols=337 Identities=19% Similarity=0.238 Sum_probs=258.0
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHH
Q psy7557 83 HYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTREL 162 (936)
Q Consensus 83 ~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~L 162 (936)
....+..++.+.|+..|+++|.+|+..+.+|+|++++.|||||||++|++|++.+++.. ...++|||.||++|
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~-------~~a~AL~lYPtnAL 127 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRD-------PSARALLLYPTNAL 127 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhC-------cCccEEEEechhhh
Confidence 34556888999999999999999999999999999999999999999999999998753 33488999999999
Q ss_pred HHHHHHHHHhcc-CC--CCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcC----CcCCCCceEEEEccchhh
Q psy7557 163 ATQIEREVNKID-YK--GLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRA----SIDLKAVSFVVLDEADRM 235 (936)
Q Consensus 163 a~Q~~~~~~~~~-~~--~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~----~~~~~~~~~lViDEah~l 235 (936)
|+.+.+.++++. .. ++.+....|+....+......+.++|++|||.+|..++.+. ...++++++||+||+|..
T Consensus 128 a~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtY 207 (851)
T COG1205 128 ANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTY 207 (851)
T ss_pred HhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceec
Confidence 999999999973 22 46777777776666555566677999999999997755443 234788999999999965
Q ss_pred hc---CCCHHHHHHHHhh---cCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeC------
Q psy7557 236 LD---LGFEPQINKTSIY---INPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD------ 303 (936)
Q Consensus 236 ~~---~~~~~~~~~i~~~---~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------ 303 (936)
-. ....-.++++... .+...|+++.|||+. +...++..+........+.... .+......+..-.
T Consensus 208 rGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~-np~e~~~~l~~~~f~~~v~~~g--~~~~~~~~~~~~p~~~~~~ 284 (851)
T COG1205 208 RGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLA-NPGEFAEELFGRDFEVPVDEDG--SPRGLRYFVRREPPIRELA 284 (851)
T ss_pred cccchhHHHHHHHHHHHHHhccCCCceEEEEecccc-ChHHHHHHhcCCcceeeccCCC--CCCCceEEEEeCCcchhhh
Confidence 32 1123334444333 346789999999997 4456666666555544333322 1222222222222
Q ss_pred ---chhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHH----HHhhhcC----CceeeecCCCCHHHHHHHHHHhhcCC
Q psy7557 304 ---EDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMS----SDLACQY----RKSCSLYGDLSQEDREIALEDITSGY 372 (936)
Q Consensus 304 ---~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~----~~L~~~~----~~~~~~h~~~~~~~R~~~~~~f~~g~ 372 (936)
...+...+..+.......+-++|+|+.++..++.++ ..+...+ ..+..++|+|...+|.+++..|+.|+
T Consensus 285 ~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~ 364 (851)
T COG1205 285 ESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGE 364 (851)
T ss_pred hhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCC
Confidence 123344444444444456789999999999999887 4444444 56788999999999999999999999
Q ss_pred cEEEEEecccccCCCCCCCcEEEEecCCC-CccccccCCCCcccCCCceeEEEEeccc
Q psy7557 373 ARICVATDVASRGLDVPDLTHVINYDFPS-HIEEYVHRVGRTGRAGKSGESITLMTRK 429 (936)
Q Consensus 373 ~~vLvaT~~~~~GiDip~v~~VI~~d~p~-s~~~y~qr~GRagR~g~~g~~~~~~~~~ 429 (936)
..++++|++++-|+|+.+++.||.++.|. +..+|+||+||+||.++.+..+.+...+
T Consensus 365 ~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~ 422 (851)
T COG1205 365 LLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSD 422 (851)
T ss_pred ccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCC
Confidence 99999999999999999999999999999 8999999999999999777777766633
No 146
>KOG0351|consensus
Probab=100.00 E-value=4e-34 Score=336.07 Aligned_cols=310 Identities=23% Similarity=0.311 Sum_probs=245.7
Q ss_pred HHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHH
Q psy7557 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQI 686 (936)
Q Consensus 607 ~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~ 686 (936)
.......+|+..++|-|.+||...+.|+|+++.+|||+||++||.+|++. .++.+|||.|..+| +
T Consensus 253 ~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l------------~~gitvVISPL~SL---m 317 (941)
T KOG0351|consen 253 ELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALL------------LGGVTVVISPLISL---M 317 (941)
T ss_pred HHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccc------------cCCceEEeccHHHH---H
Confidence 34445668999999999999999999999999999999999999999882 34589999999999 6
Q ss_pred HHHHHhccCCCCEEEEEECCccchH---HHHHHhcC---ceEEEeCchHHHHHH--HcCCCCCCC---ceEEEEcccchh
Q psy7557 687 EREVNKIDYKGLKAVCVYGGKELEP---QLEKIREG---CHILIATPGRLNDFV--SRASIDLKA---VSFVVLDEADRM 755 (936)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~l~~~---~~IiV~Tp~~l~~~l--~~~~~~~~~---i~~lViDEah~l 755 (936)
.+++..+...++....+.++..... ..+.+.++ .+|+..|||++...- ......+.. +.++||||||++
T Consensus 318 ~DQv~~L~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCV 397 (941)
T KOG0351|consen 318 QDQVTHLSKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCV 397 (941)
T ss_pred HHHHHhhhhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHh
Confidence 6777777778999999998877653 33445554 799999999986422 111223444 899999999999
Q ss_pred ccCC--CHHHHHHHhhhc--CCCceEEEEEecCChHHHHHHHHh--cCCCeEEEeCCCCcccCCceEEEEEEcCcchhHH
Q psy7557 756 LDLG--FEPQINKTSIYI--NPNRQTVMTSATWNKDVQRVAKKY--MVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKD 829 (936)
Q Consensus 756 ~~~~--~~~~~~~i~~~~--~~~~q~v~~SAT~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~ 829 (936)
.+|| |++.+..+.... .+..+++++|||.+..++.-+-.. +.+|..+.... ...++...+..........
T Consensus 398 SqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sf----nR~NL~yeV~~k~~~~~~~ 473 (941)
T KOG0351|consen 398 SQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSF----NRPNLKYEVSPKTDKDALL 473 (941)
T ss_pred hhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccC----CCCCceEEEEeccCccchH
Confidence 9998 999888865443 355899999999998887644333 45555332222 2233333333333223333
Q ss_pred HHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCC
Q psy7557 830 WLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVP 909 (936)
Q Consensus 830 ~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip 909 (936)
.+....... .+...+||||.++.+|+.++..|...+..+..||+||+..+|..|...|..++++|+|||=++++|||.|
T Consensus 474 ~~~~~~~~~-~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~ 552 (941)
T KOG0351|consen 474 DILEESKLR-HPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKP 552 (941)
T ss_pred HHHHHhhhc-CCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCC
Confidence 333444443 5678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 910 DLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 910 ~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
||+.||||.+|.|++.|.|-+|||||-
T Consensus 553 DVR~ViH~~lPks~E~YYQE~GRAGRD 579 (941)
T KOG0351|consen 553 DVRFVIHYSLPKSFEGYYQEAGRAGRD 579 (941)
T ss_pred ceeEEEECCCchhHHHHHHhccccCcC
Confidence 999999999999999999999999993
No 147
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=2.8e-33 Score=342.02 Aligned_cols=327 Identities=23% Similarity=0.266 Sum_probs=243.3
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhcc-
Q psy7557 96 FTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID- 174 (936)
Q Consensus 96 ~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~- 174 (936)
..+|+++|.+++..++.+ |+++++|||+|||++|++++...+. ..+.++|||+||++|+.|+.+.++++.
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~--------~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 83 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH--------KKGGKVLILAPTKPLVEQHAEFFRKFLN 83 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH--------hCCCeEEEEeCcHHHHHHHHHHHHHHhC
Confidence 348899999999988886 9999999999999999988776652 245689999999999999999999853
Q ss_pred CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHHHhhcCCC
Q psy7557 175 YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPN 254 (936)
Q Consensus 175 ~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~ 254 (936)
..+.++..++|+.... ....+..+++|+|+||+.+...+..+.+.+.+++++|+||||++........+........+.
T Consensus 84 ~~~~~v~~~~g~~~~~-~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~ 162 (773)
T PRK13766 84 IPEEKIVVFTGEVSPE-KRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKN 162 (773)
T ss_pred CCCceEEEEeCCCCHH-HHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCC
Confidence 3345777777766544 344555678999999999988887778888999999999999987654444444444444456
Q ss_pred CcEEEEEeccchH---HHHHHHHhcCCCEEEEeCCCC-------------------------------------------
Q psy7557 255 RQTVMTSATWNKD---VQRVAKKYMVNPVKVNVGSLD------------------------------------------- 288 (936)
Q Consensus 255 ~q~~~~SAT~~~~---~~~~~~~~~~~~~~i~~~~~~------------------------------------------- 288 (936)
.++++||||+... +..+...+....+.+......
T Consensus 163 ~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~ 242 (773)
T PRK13766 163 PLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKEL 242 (773)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 7899999997422 222222222111111000000
Q ss_pred -ccc-CC-------------ceEEE-------------------------------------------------------
Q psy7557 289 -LAA-TH-------------TVTQK------------------------------------------------------- 298 (936)
Q Consensus 289 -~~~-~~-------------~~~~~------------------------------------------------------- 298 (936)
... .. .+.+.
T Consensus 243 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~ 322 (773)
T PRK13766 243 GVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKA 322 (773)
T ss_pred CCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHH
Confidence 000 00 00000
Q ss_pred -----------------EEEeCchhhHHHHHHHHHhcc--CCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCC----
Q psy7557 299 -----------------IIILDEDEKKDWLMEFFDNMD--EERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGD---- 355 (936)
Q Consensus 299 -----------------~~~~~~~~k~~~l~~~l~~~~--~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~---- 355 (936)
........|...|.+++.... ....++||||+++..+..+++.|...++.+..+||.
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~ 402 (773)
T PRK13766 323 SKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKD 402 (773)
T ss_pred HHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEcccccc
Confidence 000111234455555554432 457899999999999999999999999999899886
Q ss_pred ----CCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccCh
Q psy7557 356 ----LSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDW 431 (936)
Q Consensus 356 ----~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~ 431 (936)
|++.+|..++++|++|+.+|||||+++++|+|+|++++||+||+|.+...|+||+||+||.|. |.+++++..+..
T Consensus 403 ~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~t~ 481 (773)
T PRK13766 403 GDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKGTR 481 (773)
T ss_pred ccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCCCh
Confidence 999999999999999999999999999999999999999999999999999999999999864 889999887764
Q ss_pred hh
Q psy7557 432 SH 433 (936)
Q Consensus 432 ~~ 433 (936)
+.
T Consensus 482 ee 483 (773)
T PRK13766 482 DE 483 (773)
T ss_pred HH
Confidence 43
No 148
>KOG0354|consensus
Probab=100.00 E-value=1.8e-33 Score=315.08 Aligned_cols=323 Identities=23% Similarity=0.252 Sum_probs=231.4
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhccC
Q psy7557 96 FTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDY 175 (936)
Q Consensus 96 ~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 175 (936)
.-.+++||.+....++ |+|+|+++|||+|||.++..-++.++.. ..+.++|+++||+-|+.|+...+..++.
T Consensus 60 ~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw-------~p~~KiVF~aP~~pLv~QQ~a~~~~~~~ 131 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEW-------RPKGKVVFLAPTRPLVNQQIACFSIYLI 131 (746)
T ss_pred cccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhc-------CCcceEEEeeCCchHHHHHHHHHhhccC
Confidence 3478999999999999 9999999999999999999888888743 3347999999999999998877777643
Q ss_pred CCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcC-CCCceEEEEccchhhhcCCCHHHHH-HHHhhcCC
Q psy7557 176 KGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASID-LKAVSFVVLDEADRMLDLGFEPQIN-KTSIYINP 253 (936)
Q Consensus 176 ~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~-~~~~~~lViDEah~l~~~~~~~~~~-~i~~~~~~ 253 (936)
. -.+....||.........+...++|+|+||+.+.+.|.++... ++.+.++||||||+-....-+..+. ..+..-..
T Consensus 132 ~-~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~ 210 (746)
T KOG0354|consen 132 P-YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQ 210 (746)
T ss_pred c-ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhc
Confidence 3 5666666775555555566677999999999999988876544 5999999999999987766555554 44444334
Q ss_pred CCcEEEEEeccchHHHHHHHH---hcCC----------------------CEE---------------------------
Q psy7557 254 NRQTVMTSATWNKDVQRVAKK---YMVN----------------------PVK--------------------------- 281 (936)
Q Consensus 254 ~~q~~~~SAT~~~~~~~~~~~---~~~~----------------------~~~--------------------------- 281 (936)
..|++++|||+.+........ +..+ |+.
T Consensus 211 ~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~ 290 (746)
T KOG0354|consen 211 GNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEG 290 (746)
T ss_pred cccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcC
Confidence 449999999987553332111 1000 000
Q ss_pred ---EEeCC-----------CCcccCCceEEE--------------------EEE--------------------------
Q psy7557 282 ---VNVGS-----------LDLAATHTVTQK--------------------III-------------------------- 301 (936)
Q Consensus 282 ---i~~~~-----------~~~~~~~~~~~~--------------------~~~-------------------------- 301 (936)
+.-.. ........-.+. +.+
T Consensus 291 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~ 370 (746)
T KOG0354|consen 291 LIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEA 370 (746)
T ss_pred ccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcc
Confidence 00000 000000000000 000
Q ss_pred ------------------e--CchhhHHHHHHHHHhc--cCCCCcEEEEeCchHHHHHHHHHhhh---cCCceeeec---
Q psy7557 302 ------------------L--DEDEKKDWLMEFFDNM--DEERDKVMVFMGRKASVSAMSSDLAC---QYRKSCSLY--- 353 (936)
Q Consensus 302 ------------------~--~~~~k~~~l~~~l~~~--~~~~~~~iVF~~~~~~~~~l~~~L~~---~~~~~~~~h--- 353 (936)
. ....|...+.+.+... .....++||||.+|..|..+...|.. .+++...+-
T Consensus 371 ~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~ 450 (746)
T KOG0354|consen 371 RLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQG 450 (746)
T ss_pred hhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeecc
Confidence 0 0112223333322221 23467899999999999999999873 233333333
Q ss_pred -----CCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEecc
Q psy7557 354 -----GDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTR 428 (936)
Q Consensus 354 -----~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~ 428 (936)
.+|+|.++.+++++|++|+++|||||+++++|+|||.|++||.||...|+...+||.|| ||+ +.|.++++++.
T Consensus 451 ~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~ 528 (746)
T KOG0354|consen 451 KSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTG 528 (746)
T ss_pred ccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcc
Confidence 48999999999999999999999999999999999999999999999999999999999 999 57999999984
Q ss_pred c
Q psy7557 429 K 429 (936)
Q Consensus 429 ~ 429 (936)
.
T Consensus 529 ~ 529 (746)
T KOG0354|consen 529 S 529 (746)
T ss_pred h
Confidence 3
No 149
>KOG0352|consensus
Probab=100.00 E-value=2.1e-34 Score=293.98 Aligned_cols=313 Identities=19% Similarity=0.213 Sum_probs=231.1
Q ss_pred HHHHHHHh-CCCCCC-cHHHHHHHHhhhcC-CcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHH
Q psy7557 606 EILRQLEN-LSFTTP-SPIQAQAWPILMSG-HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTREL 682 (936)
Q Consensus 606 ~~~~~l~~-~g~~~p-~~iQ~~ai~~~l~g-~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~L 682 (936)
.+.++|++ +||.++ +|.|.+|+.++..+ +|+.+++|||+||++||.||.|.+ +...||+.|..+|
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~------------~gITIV~SPLiAL 73 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH------------GGITIVISPLIAL 73 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh------------CCeEEEehHHHHH
Confidence 35667766 577665 89999999998865 699999999999999999999842 4489999999999
Q ss_pred HHHHHHHHHhccCCCCEEEEEECCccchH---HHHHHh---cCceEEEeCchHHHHHHH----cCCCCCCCceEEEEccc
Q psy7557 683 ATQIEREVNKIDYKGLKAVCVYGGKELEP---QLEKIR---EGCHILIATPGRLNDFVS----RASIDLKAVSFVVLDEA 752 (936)
Q Consensus 683 a~Q~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~l~---~~~~IiV~Tp~~l~~~l~----~~~~~~~~i~~lViDEa 752 (936)
.....+.+.++ .+++..+.+..+..+ ....|. ....++.-|||....-.. +...+-+.+.|+|+|||
T Consensus 74 IkDQiDHL~~L---KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEA 150 (641)
T KOG0352|consen 74 IKDQIDHLKRL---KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEA 150 (641)
T ss_pred HHHHHHHHHhc---CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechh
Confidence 66656666554 344444444333222 222232 246799999997533221 12223456789999999
Q ss_pred chhccCC--CHHHHHHHhhhcC--CCceEEEEEecCChHHHHHH--HHhcCCCeEEEeCCCCcccCCceEEEEEEcC-cc
Q psy7557 753 DRMLDLG--FEPQINKTSIYIN--PNRQTVMTSATWNKDVQRVA--KKYMVNPVKVNVGSLDLAATHTVTQKIIILD-ED 825 (936)
Q Consensus 753 h~l~~~~--~~~~~~~i~~~~~--~~~q~v~~SAT~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~ 825 (936)
|++.+|| |++.+..+..... ++...++++||.++.+++-. ..-+.+|+-+.-.+.-. .++-..+.+.+ -.
T Consensus 151 HCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR---~NLFYD~~~K~~I~ 227 (641)
T KOG0352|consen 151 HCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFR---DNLFYDNHMKSFIT 227 (641)
T ss_pred hhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchh---hhhhHHHHHHHHhh
Confidence 9999998 8888887755543 68899999999998887633 33467787654332210 00000000000 01
Q ss_pred hhHHHHHHHHHhcc-----------CCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCc
Q psy7557 826 EKKDWLMEFFDNMD-----------EERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYAR 894 (936)
Q Consensus 826 ~k~~~l~~~l~~~~-----------~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~ 894 (936)
+-...|.++..... ...+-.||||.|++.|+.++-.|.+.|+++..+|+||...+|.++-+.|.++++.
T Consensus 228 D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~P 307 (641)
T KOG0352|consen 228 DCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIP 307 (641)
T ss_pred hHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCC
Confidence 12233444433321 1234579999999999999999999999999999999999999999999999999
Q ss_pred EEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 895 ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 895 vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
|++||..+++|+|-|+|++|||+++|.|+.-|.|..|||||-
T Consensus 308 vI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRD 349 (641)
T KOG0352|consen 308 VIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRD 349 (641)
T ss_pred EEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccC
Confidence 999999999999999999999999999999999999999993
No 150
>KOG0354|consensus
Probab=100.00 E-value=4.1e-33 Score=312.17 Aligned_cols=310 Identities=22% Similarity=0.247 Sum_probs=222.0
Q ss_pred CCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhccCC
Q psy7557 617 TTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYK 696 (936)
Q Consensus 617 ~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~ 696 (936)
-.+++||.+....++ |+|+|+++|||+|||+++...++.|+.. .++.++|+++||+-|+.|....+..++..
T Consensus 61 ~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw-------~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~ 132 (746)
T KOG0354|consen 61 LELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEW-------RPKGKVVFLAPTRPLVNQQIACFSIYLIP 132 (746)
T ss_pred ccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhc-------CCcceEEEeeCCchHHHHHHHHHhhccCc
Confidence 478999999999999 9999999999999999999888888754 34579999999999999888777777654
Q ss_pred CCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCC-CCCceEEEEcccchhccCCCHHHHH-HHhhhcCCC
Q psy7557 697 GLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASID-LKAVSFVVLDEADRMLDLGFEPQIN-KTSIYINPN 774 (936)
Q Consensus 697 ~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~-~~~i~~lViDEah~l~~~~~~~~~~-~i~~~~~~~ 774 (936)
..+....||.........+....+|+|+||+.+...+.++... ++.+.++||||||+-....-+..+. ..+..-...
T Consensus 133 -~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~ 211 (746)
T KOG0354|consen 133 -YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQG 211 (746)
T ss_pred -ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhcc
Confidence 6667777775555555567777999999999999888776443 6999999999999988776555554 444444445
Q ss_pred ceEEEEEecCChHHHHHH---HHhcCC--------------------CeEEEe---------------------------
Q psy7557 775 RQTVMTSATWNKDVQRVA---KKYMVN--------------------PVKVNV--------------------------- 804 (936)
Q Consensus 775 ~q~v~~SAT~~~~~~~~~---~~~~~~--------------------~~~i~~--------------------------- 804 (936)
.|++++|||+..+..... ..+..+ ++.+.+
T Consensus 212 ~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l 291 (746)
T KOG0354|consen 212 NQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGL 291 (746)
T ss_pred ccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCc
Confidence 599999999754322211 111000 000000
Q ss_pred ---CCCC-------------cccCCceEEE--------------------EE----------------------------
Q psy7557 805 ---GSLD-------------LAATHTVTQK--------------------II---------------------------- 820 (936)
Q Consensus 805 ---~~~~-------------~~~~~~~~~~--------------------~~---------------------------- 820 (936)
.... ......-.+. +.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~ 371 (746)
T KOG0354|consen 292 IEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEAR 371 (746)
T ss_pred cccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcch
Confidence 0000 0000000000 00
Q ss_pred ----------------E--cCcchhHHHHHHHHHhc--cCCCCcEEEEcCChHHHHHHHHHHHh---cCCceEEEe----
Q psy7557 821 ----------------I--LDEDEKKDWLMEFFDNM--DEERDKVMVFMGRKASVSAMSSDLAC---QYRKSCSLY---- 873 (936)
Q Consensus 821 ----------------~--~~~~~k~~~l~~~l~~~--~~~~~~~iIF~~s~~~~~~l~~~L~~---~~~~~~~~h---- 873 (936)
. -....|...+.+.+... .....++||||.+|..|..|...|.+ .+++...+-
T Consensus 372 ~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~ 451 (746)
T KOG0354|consen 372 LIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGK 451 (746)
T ss_pred hhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccc
Confidence 0 00112233333333222 23457899999999999999999873 222333332
Q ss_pred ----CCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 874 ----GDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 874 ----~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
.+|++.++.++++.|++|.++|||||+++++|+||+.|++||.||...+...+|||.|| ||+
T Consensus 452 s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa 517 (746)
T KOG0354|consen 452 STQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA 517 (746)
T ss_pred cccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc
Confidence 48999999999999999999999999999999999999999999999999999999999 995
No 151
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=6.1e-33 Score=321.48 Aligned_cols=305 Identities=19% Similarity=0.230 Sum_probs=225.4
Q ss_pred CCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc
Q psy7557 614 LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693 (936)
Q Consensus 614 ~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 693 (936)
+|. .|+++|..+.+.+..|+ |+.+.||+|||++|.+|++.... .|+.|+|++||++||.|.++.+..+
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al---------~G~~v~VvTpt~~LA~qd~e~~~~l 142 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL---------EGKGVHLITVNDYLAKRDAEEMGQV 142 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH---------cCCCeEEEeCCHHHHHHHHHHHHHH
Confidence 577 99999999999998887 99999999999999999986553 4778999999999999999999886
Q ss_pred -cCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHH-HHHHHcCC------CCCCCceEEEEcccchhc-cCC-----
Q psy7557 694 -DYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRL-NDFVSRAS------IDLKAVSFVVLDEADRML-DLG----- 759 (936)
Q Consensus 694 -~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l-~~~l~~~~------~~~~~i~~lViDEah~l~-~~~----- 759 (936)
...|+++++++||.+...+.. ...+++|++|||+++ .+++.... ..++.+.++|+||||.|+ |..
T Consensus 143 ~~~lGl~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpli 221 (790)
T PRK09200 143 YEFLGLTVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLI 221 (790)
T ss_pred HhhcCCeEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCcee
Confidence 467999999999987444433 335699999999999 45554321 346889999999999875 211
Q ss_pred ----------CHHHHHHHhhhcCC--------Cc----------------------------------------------
Q psy7557 760 ----------FEPQINKTSIYINP--------NR---------------------------------------------- 775 (936)
Q Consensus 760 ----------~~~~~~~i~~~~~~--------~~---------------------------------------------- 775 (936)
+......+...+.. ..
T Consensus 222 isg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~ 301 (790)
T PRK09200 222 ISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKR 301 (790)
T ss_pred eeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhc
Confidence 11122222222211 11
Q ss_pred ---------------------------------------------------------------eEEEEEecCChHHHHHH
Q psy7557 776 ---------------------------------------------------------------QTVMTSATWNKDVQRVA 792 (936)
Q Consensus 776 ---------------------------------------------------------------q~v~~SAT~~~~~~~~~ 792 (936)
.+.+||.|....-..+.
T Consensus 302 d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~ 381 (790)
T PRK09200 302 DVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFF 381 (790)
T ss_pred CCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHH
Confidence 22333333322222222
Q ss_pred HHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEE
Q psy7557 793 KKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSL 872 (936)
Q Consensus 793 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~ 872 (936)
+.|..+- +.+.... +....-....+++....|...+...+........|+||||+|+..++.++..|...++++..+
T Consensus 382 ~~Y~l~v--~~IPt~k-p~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L 458 (790)
T PRK09200 382 EVYNMEV--VQIPTNR-PIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLL 458 (790)
T ss_pred HHhCCcE--EECCCCC-CcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEe
Confidence 2221111 1111110 000001112345667788888888887755567899999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCC---CCCC-----EEEEccCCCChhhhHhhhhhccCC
Q psy7557 873 YGDLSQEDREIALEDITSGYARICVATDVASRGLDV---PDLT-----HVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 873 h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidi---p~v~-----~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
||++.+.++..+...++.| +|+|||++++||+|+ |+|. +||+|++|.|...|+||+|||||.
T Consensus 459 ~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~ 528 (790)
T PRK09200 459 NAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQ 528 (790)
T ss_pred cCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCC
Confidence 9999999998888888777 799999999999999 6998 999999999999999999999995
No 152
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=1.1e-32 Score=327.43 Aligned_cols=320 Identities=20% Similarity=0.242 Sum_probs=247.2
Q ss_pred HHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHH
Q psy7557 605 PEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELAT 684 (936)
Q Consensus 605 ~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~ 684 (936)
..+..++.+.|...|+++|.+|+..+.+|+|++++++||||||++|++|++.+++.. +..++|||.||++||+
T Consensus 57 ~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~-------~~a~AL~lYPtnALa~ 129 (851)
T COG1205 57 ESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRD-------PSARALLLYPTNALAN 129 (851)
T ss_pred hHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhC-------cCccEEEEechhhhHh
Confidence 446888899999999999999999999999999999999999999999999998763 3448999999999999
Q ss_pred HHHHHHHhcc-CC--CCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcC----CCCCCCceEEEEcccchhcc
Q psy7557 685 QIEREVNKID-YK--GLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRA----SIDLKAVSFVVLDEADRMLD 757 (936)
Q Consensus 685 Q~~~~~~~~~-~~--~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~----~~~~~~i~~lViDEah~l~~ 757 (936)
.+.+.++++. .. ++.....+|..........+.+.++|++++|.+|..++.++ ...++++++||+||+|.+-.
T Consensus 130 DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrG 209 (851)
T COG1205 130 DQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRG 209 (851)
T ss_pred hHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccc
Confidence 9999999873 22 46666666666655555667788999999999998855443 23468899999999996532
Q ss_pred CCCHHHH----HHHhhhc---CCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcC-------
Q psy7557 758 LGFEPQI----NKTSIYI---NPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD------- 823 (936)
Q Consensus 758 ~~~~~~~----~~i~~~~---~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------- 823 (936)
.|...+ +++...+ +.+.|+|+.|||+. +...++..+........+.... ........+...+
T Consensus 210 -v~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~-np~e~~~~l~~~~f~~~v~~~g--~~~~~~~~~~~~p~~~~~~~ 285 (851)
T COG1205 210 -VQGSEVALLLRRLLRRLRRYGSPLQIICTSATLA-NPGEFAEELFGRDFEVPVDEDG--SPRGLRYFVRREPPIRELAE 285 (851)
T ss_pred -cchhHHHHHHHHHHHHHhccCCCceEEEEecccc-ChHHHHHHhcCCcceeeccCCC--CCCCceEEEEeCCcchhhhh
Confidence 244433 3333333 46789999999995 5566677776666555333222 1222222222222
Q ss_pred --cchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHH----HHHHhcC----CceEEEeCCCCHHHHHHHHHHhhcCCC
Q psy7557 824 --EDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMS----SDLACQY----RKSCSLYGDLSQEDREIALEDITSGYA 893 (936)
Q Consensus 824 --~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~----~~L~~~~----~~~~~~h~~l~~~~R~~~~~~F~~g~~ 893 (936)
...+...+..+.......+-++|+|+.++..++.++ ..+...+ ..+..++|+|..++|.+++..|++|+.
T Consensus 286 ~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~ 365 (851)
T COG1205 286 SIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGEL 365 (851)
T ss_pred hcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCc
Confidence 123344444444444456778999999999999997 4444444 567889999999999999999999999
Q ss_pred cEEEecccCccCCCCCCCCEEEEccCCC-ChhhhHhhhhhccC
Q psy7557 894 RICVATDVASRGLDVPDLTHVINYDFPS-HIEEYVHRVGRTGE 935 (936)
Q Consensus 894 ~vLVaT~~~~~Gidip~v~~VI~~d~p~-s~~~yiqr~GRaGR 935 (936)
.++++|++++-|+|+.+++.||.++.|. +..+|+||.|||||
T Consensus 366 ~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR 408 (851)
T COG1205 366 LGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGR 408 (851)
T ss_pred cEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccC
Confidence 9999999999999999999999999999 89999999999999
No 153
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=2.2e-32 Score=328.58 Aligned_cols=299 Identities=22% Similarity=0.311 Sum_probs=212.6
Q ss_pred HHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCc----HHHHHHHHHHHHhccCCCCEEE
Q psy7557 106 AWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPT----RELATQIEREVNKIDYKGLKAV 181 (936)
Q Consensus 106 ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt----~~La~Q~~~~~~~~~~~~~~~~ 181 (936)
.+..+..++.++++|+||||||. .+|.+...... .....+++..|. ++||.++.+++..- .|-.++
T Consensus 82 Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~------g~~g~I~~TQPRRlAArsLA~RVA~El~~~--lG~~VG 151 (1294)
T PRK11131 82 ILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGR------GVKGLIGHTQPRRLAARTVANRIAEELETE--LGGCVG 151 (1294)
T ss_pred HHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCC------CCCCceeeCCCcHHHHHHHHHHHHHHHhhh--hcceec
Confidence 34445556677888999999999 68865443211 112345556674 67888888877651 122222
Q ss_pred EEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccch-hhhcCCCHHH-HHHHHhhcCCCCcEEE
Q psy7557 182 CVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEAD-RMLDLGFEPQ-INKTSIYINPNRQTVM 259 (936)
Q Consensus 182 ~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah-~l~~~~~~~~-~~~i~~~~~~~~q~~~ 259 (936)
.-.. ..+ ....+++|+|+|||+|++.+.... .++++++||||||| ++++.+|... +..++. .+++.|+++
T Consensus 152 Y~vr---f~~---~~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~-~rpdlKvIL 223 (1294)
T PRK11131 152 YKVR---FND---QVSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFILGYLKELLP-RRPDLKVII 223 (1294)
T ss_pred eeec---Ccc---ccCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchHHHHHHHhhh-cCCCceEEE
Confidence 2111 111 123458999999999999987654 48999999999999 6889888754 333332 236789999
Q ss_pred EEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCch------hhHHHHHHHHHhc-cCCCCcEEEEeCch
Q psy7557 260 TSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDED------EKKDWLMEFFDNM-DEERDKVMVFMGRK 332 (936)
Q Consensus 260 ~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~------~k~~~l~~~l~~~-~~~~~~~iVF~~~~ 332 (936)
||||++. ..+.+.|...|+ +.+... ...+...+...... +....+...+... ....+.+|||++++
T Consensus 224 mSATid~--e~fs~~F~~apv-I~V~Gr----~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~ 296 (1294)
T PRK11131 224 TSATIDP--ERFSRHFNNAPI-IEVSGR----TYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGE 296 (1294)
T ss_pred eeCCCCH--HHHHHHcCCCCE-EEEcCc----cccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCH
Confidence 9999975 466776666664 444432 22345555443221 1222233322221 24568899999999
Q ss_pred HHHHHHHHHhhhcCCc---eeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEecC----------
Q psy7557 333 ASVSAMSSDLACQYRK---SCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDF---------- 399 (936)
Q Consensus 333 ~~~~~l~~~L~~~~~~---~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~---------- 399 (936)
.+++.+++.|...+.+ +..+||+|++.+|..+++. .|..+||||||++++|||||+|++||+++.
T Consensus 297 ~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~ 374 (1294)
T PRK11131 297 REIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRT 374 (1294)
T ss_pred HHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCcccccccccc
Confidence 9999999999987764 6689999999999999886 578999999999999999999999999863
Q ss_pred -----C---CCccccccCCCCcccCCCceeEEEEecccChh
Q psy7557 400 -----P---SHIEEYVHRVGRTGRAGKSGESITLMTRKDWS 432 (936)
Q Consensus 400 -----p---~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~ 432 (936)
| .|.++|.||+|||||. .+|.|+.++++++..
T Consensus 375 ~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 375 KVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFL 414 (1294)
T ss_pred CcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHH
Confidence 3 3557899999999999 699999999987644
No 154
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=5.7e-32 Score=330.51 Aligned_cols=311 Identities=23% Similarity=0.253 Sum_probs=232.1
Q ss_pred CCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhcc-
Q psy7557 616 FTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID- 694 (936)
Q Consensus 616 ~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~- 694 (936)
.-+|+++|.+++..++.+ |+++++|||+|||++|++++...+. ..+.++|||+||++|+.|+.+.++.+.
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~--------~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 83 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH--------KKGGKVLILAPTKPLVEQHAEFFRKFLN 83 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH--------hCCCeEEEEeCcHHHHHHHHHHHHHHhC
Confidence 348899999999988886 9999999999999999988876652 346799999999999999999998863
Q ss_pred CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHHHhhhcCCC
Q psy7557 695 YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPN 774 (936)
Q Consensus 695 ~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~~~~ 774 (936)
..+.++..++|+..... ...+..+++|+|+||+.+...+..+.+.+.++++|||||||++........+........+.
T Consensus 84 ~~~~~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~ 162 (773)
T PRK13766 84 IPEEKIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKN 162 (773)
T ss_pred CCCceEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCC
Confidence 23456777777765543 44555668999999999988777777888999999999999987654444444444444566
Q ss_pred ceEEEEEecCChH---HHHHHHHhcCCCeEEEeCCCC-------------------------------------------
Q psy7557 775 RQTVMTSATWNKD---VQRVAKKYMVNPVKVNVGSLD------------------------------------------- 808 (936)
Q Consensus 775 ~q~v~~SAT~~~~---~~~~~~~~~~~~~~i~~~~~~------------------------------------------- 808 (936)
.++++||||+... +..++..+....+.+......
T Consensus 163 ~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~ 242 (773)
T PRK13766 163 PLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKEL 242 (773)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 7899999997422 222233222111111000000
Q ss_pred -cc-cCC-------------ceEEE-------------------------------------------------------
Q psy7557 809 -LA-ATH-------------TVTQK------------------------------------------------------- 818 (936)
Q Consensus 809 -~~-~~~-------------~~~~~------------------------------------------------------- 818 (936)
.. ... .+...
T Consensus 243 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~ 322 (773)
T PRK13766 243 GVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKA 322 (773)
T ss_pred CCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHH
Confidence 00 000 00000
Q ss_pred -----------------EEEcCcchhHHHHHHHHHhcc--CCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCC----
Q psy7557 819 -----------------IIILDEDEKKDWLMEFFDNMD--EERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGD---- 875 (936)
Q Consensus 819 -----------------~~~~~~~~k~~~l~~~l~~~~--~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~---- 875 (936)
..+.....|...|.+++.... ....++||||+++..|+.++..|...++.+..+||.
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~ 402 (773)
T PRK13766 323 SKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKD 402 (773)
T ss_pred HHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEcccccc
Confidence 000112334555555555432 356799999999999999999999999999999886
Q ss_pred ----CCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 876 ----LSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 876 ----l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
|++.+|..++++|++|+.+|||||+++++|+|+|++++||+||+|.+...|+||+||+||.
T Consensus 403 ~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~ 467 (773)
T PRK13766 403 GDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQ 467 (773)
T ss_pred ccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcC
Confidence 9999999999999999999999999999999999999999999999999999999999993
No 155
>KOG0353|consensus
Probab=100.00 E-value=3.2e-33 Score=280.77 Aligned_cols=339 Identities=20% Similarity=0.279 Sum_probs=255.9
Q ss_pred hcCCHHHHHHHHh-CCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCc
Q psy7557 81 FQHYPEILRQLEN-LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPT 159 (936)
Q Consensus 81 ~~~~~~l~~~l~~-~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt 159 (936)
|+.+.+..+.|++ ....+.+|.|..+|.+.++|.|++++.|||.||++||.+|++. ....+||++|.
T Consensus 76 fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~------------adg~alvi~pl 143 (695)
T KOG0353|consen 76 FPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALC------------ADGFALVICPL 143 (695)
T ss_pred CCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHh------------cCCceEeechh
Confidence 5556666665654 3456889999999999999999999999999999999999984 23468999999
Q ss_pred HHHHHHHHHHHHhccCCCCEEEEEeCCccchHHH---HHhh---cCCcEEEeCCchhHH---HHHc--CCcCCCCceEEE
Q psy7557 160 RELATQIEREVNKIDYKGLKAVCVYGGKEIEPQL---EKIR---EGCHILIATPGRLND---FVSR--ASIDLKAVSFVV 228 (936)
Q Consensus 160 ~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~~~---~~~~Iiv~Tp~~l~~---~l~~--~~~~~~~~~~lV 228 (936)
..|...+.-+++.+ |+....+....+..... ..+. ....+++.||+++.. ++.+ +.+....+.++-
T Consensus 144 islmedqil~lkql---gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~ia 220 (695)
T KOG0353|consen 144 ISLMEDQILQLKQL---GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIA 220 (695)
T ss_pred HHHHHHHHHHHHHh---CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEe
Confidence 99976665566654 55555554443332221 1121 126799999999853 3332 355677899999
Q ss_pred EccchhhhcCC--CHHHHHHH--HhhcCCCCcEEEEEeccchHHHHHHHHhcCCC--EEEEeCCCCcccCCceEEEEEEe
Q psy7557 229 LDEADRMLDLG--FEPQINKT--SIYINPNRQTVMTSATWNKDVQRVAKKYMVNP--VKVNVGSLDLAATHTVTQKIIIL 302 (936)
Q Consensus 229 iDEah~l~~~~--~~~~~~~i--~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~ 302 (936)
+||+|+...|| |++.+..+ +..--++..+++++||.+..+.+.++..+.-. .....+.. ..++...+..-
T Consensus 221 idevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fn----r~nl~yev~qk 296 (695)
T KOG0353|consen 221 IDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFN----RPNLKYEVRQK 296 (695)
T ss_pred ecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccC----CCCceeEeeeC
Confidence 99999999998 77776654 34444688999999999988887776654311 11111111 22233333222
Q ss_pred --CchhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEec
Q psy7557 303 --DEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATD 380 (936)
Q Consensus 303 --~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~ 380 (936)
.+++-.+.+..++..- -.+...||||-+++.++.++..|+.+|+....+|+.|.+.+|.-+-+.|..|+++|+|||-
T Consensus 297 p~n~dd~~edi~k~i~~~-f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatv 375 (695)
T KOG0353|consen 297 PGNEDDCIEDIAKLIKGD-FAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATV 375 (695)
T ss_pred CCChHHHHHHHHHHhccc-cCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEe
Confidence 2233344444544432 3456779999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCcEEEEecCCCCcccccc-------------------------------------------CCCCcccCC
Q psy7557 381 VASRGLDVPDLTHVINYDFPSHIEEYVH-------------------------------------------RVGRTGRAG 417 (936)
Q Consensus 381 ~~~~GiDip~v~~VI~~d~p~s~~~y~q-------------------------------------------r~GRagR~g 417 (936)
++++|||-|+|++|||..+|+|++.|.| ..|||||.|
T Consensus 376 afgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~ 455 (695)
T KOG0353|consen 376 AFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDD 455 (695)
T ss_pred eecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCC
Confidence 9999999999999999999999999999 789999999
Q ss_pred CceeEEEEecccChhhHHhHHH
Q psy7557 418 KSGESITLMTRKDWSHAHEIIP 439 (936)
Q Consensus 418 ~~g~~~~~~~~~~~~~~~~l~~ 439 (936)
.+..|++++.-.|.-....++.
T Consensus 456 ~~a~cilyy~~~difk~ssmv~ 477 (695)
T KOG0353|consen 456 MKADCILYYGFADIFKISSMVQ 477 (695)
T ss_pred CcccEEEEechHHHHhHHHHHH
Confidence 9999999998777655444444
No 156
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=5.6e-32 Score=310.10 Aligned_cols=305 Identities=18% Similarity=0.204 Sum_probs=216.5
Q ss_pred CCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc
Q psy7557 614 LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693 (936)
Q Consensus 614 ~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 693 (936)
+|. .|+++|..+...+..| .++.++||+|||++|.+|++...+ .++.++|++|+++||.|..+.+..+
T Consensus 67 lgl-rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL---------~g~~V~VVTpn~yLA~Rdae~m~~l 134 (762)
T TIGR03714 67 LGM-FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNAL---------TGKGAMLVTTNDYLAKRDAEEMGPV 134 (762)
T ss_pred cCC-CccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhh---------cCCceEEeCCCHHHHHHHHHHHHHH
Confidence 455 5666665555555555 799999999999999999876553 3557999999999999999999886
Q ss_pred -cCCCCEEEEEECCcc---chHHHHHHhcCceEEEeCchHH-HHHHHc------CCCCCCCceEEEEcccchhccCC---
Q psy7557 694 -DYKGLKAVCVYGGKE---LEPQLEKIREGCHILIATPGRL-NDFVSR------ASIDLKAVSFVVLDEADRMLDLG--- 759 (936)
Q Consensus 694 -~~~~~~~~~~~gg~~---~~~~~~~l~~~~~IiV~Tp~~l-~~~l~~------~~~~~~~i~~lViDEah~l~~~~--- 759 (936)
...|+++.+++++.. ..........+++|++|||+++ .+++.. +...++.+.++|+||||.|+-..
T Consensus 135 ~~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeart 214 (762)
T TIGR03714 135 YEWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQT 214 (762)
T ss_pred HhhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcC
Confidence 467888888877632 3333444556799999999999 455532 23447889999999999885211
Q ss_pred -------------CHHHHHHHhhhcCCC--------c-------------------------------------------
Q psy7557 760 -------------FEPQINKTSIYINPN--------R------------------------------------------- 775 (936)
Q Consensus 760 -------------~~~~~~~i~~~~~~~--------~------------------------------------------- 775 (936)
+......+...+.+. .
T Consensus 215 pliisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~ 294 (762)
T TIGR03714 215 PLVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYL 294 (762)
T ss_pred CeeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHH
Confidence 111121222222110 1
Q ss_pred ------------------------------------------------------------------eEEEEEecCChHHH
Q psy7557 776 ------------------------------------------------------------------QTVMTSATWNKDVQ 789 (936)
Q Consensus 776 ------------------------------------------------------------------q~v~~SAT~~~~~~ 789 (936)
.+.+||+|......
T Consensus 295 ~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~ 374 (762)
T TIGR03714 295 FKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEK 374 (762)
T ss_pred HhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHH
Confidence 23333444322222
Q ss_pred HHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCce
Q psy7557 790 RVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKS 869 (936)
Q Consensus 790 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~ 869 (936)
++.+-|..+- +.+.... +....-....+++...+|...+.+.+........++||||+|+..++.++..|...++++
T Consensus 375 Ef~~iY~l~v--~~IPt~k-p~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~ 451 (762)
T TIGR03714 375 EFIETYSLSV--VKIPTNK-PIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPH 451 (762)
T ss_pred HHHHHhCCCE--EEcCCCC-CeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCE
Confidence 2322221111 1111100 000011112456677888998988887766678899999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCC---------CCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 870 CSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVP---------DLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 870 ~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip---------~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
..+||++.+++|..+...++.| .|+|||++++||+|+| ++.+|++|++|....+ +||+|||||.
T Consensus 452 ~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRq 524 (762)
T TIGR03714 452 NLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQ 524 (762)
T ss_pred EEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCC
Confidence 9999999999998888877777 7999999999999999 9999999999988766 9999999995
No 157
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=5.1e-32 Score=308.17 Aligned_cols=304 Identities=20% Similarity=0.213 Sum_probs=225.1
Q ss_pred CCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc
Q psy7557 614 LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693 (936)
Q Consensus 614 ~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 693 (936)
+|. .|+++|..+.+.+..|+ |+.++||+|||++|.+|++...+ .|..|.|++||++||.|.++.+..+
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL---------~G~~V~VvTpt~~LA~qdae~~~~l 120 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNAL---------TGKGVHVVTVNDYLAQRDAEWMGQV 120 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHH---------hCCCEEEEcCCHHHHHHHHHHHHHH
Confidence 577 89999999999988876 99999999999999999975443 2456999999999999999999996
Q ss_pred -cCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHH-HHHHHcC------CCCCCCceEEEEcccchhccCC-C----
Q psy7557 694 -DYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRL-NDFVSRA------SIDLKAVSFVVLDEADRMLDLG-F---- 760 (936)
Q Consensus 694 -~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l-~~~l~~~------~~~~~~i~~lViDEah~l~~~~-~---- 760 (936)
...|+++.+++||.+....... ..++|++|||++| .++++.+ ...++.+.++|+||+|+|+-.. .
T Consensus 121 ~~~LGLsv~~i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLi 198 (745)
T TIGR00963 121 YRFLGLSVGLILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLI 198 (745)
T ss_pred hccCCCeEEEEeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHh
Confidence 4679999999999876544333 3589999999999 8888765 3467899999999999876311 0
Q ss_pred -----------HHHHHHHhhhcCC--------Cc----------------------------------------------
Q psy7557 761 -----------EPQINKTSIYINP--------NR---------------------------------------------- 775 (936)
Q Consensus 761 -----------~~~~~~i~~~~~~--------~~---------------------------------------------- 775 (936)
......+...+.. +.
T Consensus 199 isg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~ 278 (745)
T TIGR00963 199 ISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEK 278 (745)
T ss_pred hcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhc
Confidence 0011111111110 01
Q ss_pred ---------------------------------------------------------------eEEEEEecCChHHHHHH
Q psy7557 776 ---------------------------------------------------------------QTVMTSATWNKDVQRVA 792 (936)
Q Consensus 776 ---------------------------------------------------------------q~v~~SAT~~~~~~~~~ 792 (936)
.+.+||.|.......+.
T Consensus 279 d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~ 358 (745)
T TIGR00963 279 DVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFE 358 (745)
T ss_pred CCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHH
Confidence 22233333322222222
Q ss_pred HHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEE
Q psy7557 793 KKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSL 872 (936)
Q Consensus 793 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~ 872 (936)
..|..+-+. +.... +....-....++.....|...+.+.+......+.|+||||+|+..++.++..|...+++...+
T Consensus 359 ~iY~l~vv~--IPtnk-p~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~L 435 (745)
T TIGR00963 359 KIYNLEVVV--VPTNR-PVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVL 435 (745)
T ss_pred HHhCCCEEE--eCCCC-CeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEe
Confidence 222211111 11100 000001112345556678888877776666778999999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCC-------CCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 873 YGDLSQEDREIALEDITSGYARICVATDVASRGLDVPD-------LTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 873 h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~-------v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
||+ +.+|+..+..|+.+...|+|||++++||+||+. ..+||+++.|.|...|.||.|||||.
T Consensus 436 na~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRq 504 (745)
T TIGR00963 436 NAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQ 504 (745)
T ss_pred eCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCC
Confidence 998 889999999999999999999999999999998 55999999999999999999999995
No 158
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.2e-31 Score=307.71 Aligned_cols=320 Identities=14% Similarity=0.202 Sum_probs=222.1
Q ss_pred CCcHHHHHHHHHHh-cC--CcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhcc
Q psy7557 98 TPSPIQAQAWPILM-SG--HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID 174 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~-~g--~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 174 (936)
.++|+|.+|+..+. +| +..++++|||+|||++.+..+ ..+ +.++|||||+.+|+.|+.++|.++.
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa-~~l-----------~k~tLILvps~~Lv~QW~~ef~~~~ 322 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAA-CTV-----------KKSCLVLCTSAVSVEQWKQQFKMWS 322 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHH-HHh-----------CCCEEEEeCcHHHHHHHHHHHHHhc
Confidence 68999999999887 44 478999999999999976533 322 2458999999999999999999974
Q ss_pred C-CCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcC--------CcCCCCceEEEEccchhhhcCCCHHHHH
Q psy7557 175 Y-KGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRA--------SIDLKAVSFVVLDEADRMLDLGFEPQIN 245 (936)
Q Consensus 175 ~-~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~--------~~~~~~~~~lViDEah~l~~~~~~~~~~ 245 (936)
. ....+..++|+.... ......|+|+|.+.+.....+. .+.-...+++|+||||++.. ..+.
T Consensus 323 ~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr 393 (732)
T TIGR00603 323 TIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMFR 393 (732)
T ss_pred CCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHHH
Confidence 3 344555555543221 1123689999998774322111 12234678999999999853 4455
Q ss_pred HHHhhcCCCCcEEEEEeccchHHH--HHHHHhcCCCEEEEeCCCCcccCCce---EEE----------------------
Q psy7557 246 KTSIYINPNRQTVMTSATWNKDVQ--RVAKKYMVNPVKVNVGSLDLAATHTV---TQK---------------------- 298 (936)
Q Consensus 246 ~i~~~~~~~~q~~~~SAT~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~---------------------- 298 (936)
+++..+. ....+++|||+...-. ..+. ++..|......-.+......+ ...
T Consensus 394 ~il~~l~-a~~RLGLTATP~ReD~~~~~L~-~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k 471 (732)
T TIGR00603 394 RVLTIVQ-AHCKLGLTATLVREDDKITDLN-FLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKR 471 (732)
T ss_pred HHHHhcC-cCcEEEEeecCcccCCchhhhh-hhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhh
Confidence 5555543 3457999999863211 1122 222333322211111100000 000
Q ss_pred -EEEeCchhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcC-CcEEE
Q psy7557 299 -IIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSG-YARIC 376 (936)
Q Consensus 299 -~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g-~~~vL 376 (936)
........|...+..++..+...+.++||||++...+..++..|. +..+||++++.+|..+++.|+.| .+++|
T Consensus 472 ~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vL 546 (732)
T TIGR00603 472 MLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTI 546 (732)
T ss_pred hHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEE
Confidence 011122345555555565544467899999999999999988873 45689999999999999999975 88999
Q ss_pred EEecccccCCCCCCCcEEEEecCC-CCccccccCCCCcccCCCceeE-------EEEecccC--hhhHHhHHHHHhhcC
Q psy7557 377 VATDVASRGLDVPDLTHVINYDFP-SHIEEYVHRVGRTGRAGKSGES-------ITLMTRKD--WSHAHEIIPILEEGG 445 (936)
Q Consensus 377 vaT~~~~~GiDip~v~~VI~~d~p-~s~~~y~qr~GRagR~g~~g~~-------~~~~~~~~--~~~~~~l~~~l~~~~ 445 (936)
|+|+++++|||+|++++||+++.| .|...|+||+||++|.+..|.+ +.|++++. ...+....++|-..|
T Consensus 547 v~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~~qG 625 (732)
T TIGR00603 547 FLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLVDQG 625 (732)
T ss_pred EEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHHHCC
Confidence 999999999999999999999998 5999999999999999877665 88888764 555666667776655
No 159
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.98 E-value=1.4e-30 Score=307.14 Aligned_cols=314 Identities=21% Similarity=0.205 Sum_probs=221.0
Q ss_pred CCcHHHHHHHHHHhcC---CcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhcc
Q psy7557 98 TPSPIQAQAWPILMSG---HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID 174 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~~g---~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 174 (936)
.||+.|.++++.+.++ +++++.|+||||||.+|+.++...+ ..+.++||++||++|+.|+++.+++.
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l---------~~g~~vLvLvPt~~L~~Q~~~~l~~~- 213 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVL---------AQGKQALVLVPEIALTPQMLARFRAR- 213 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHH---------HcCCeEEEEeCcHHHHHHHHHHHHHH-
Confidence 5899999999999874 7899999999999999988766544 23678999999999999999999873
Q ss_pred CCCCEEEEEeCCccchHH---HHHhhcC-CcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCC---CHHHHHHH
Q psy7557 175 YKGLKAVCVYGGKEIEPQ---LEKIREG-CHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLG---FEPQINKT 247 (936)
Q Consensus 175 ~~~~~~~~~~gg~~~~~~---~~~~~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~---~~~~~~~i 247 (936)
.+.++..++|+.+..+. +..+..+ ++|+|+||+.+. ..+++++++|+||+|...... .....+.+
T Consensus 214 -fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~v 285 (679)
T PRK05580 214 -FGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDL 285 (679)
T ss_pred -hCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHH
Confidence 25678888888765443 3444444 899999998763 457899999999999765332 11112222
Q ss_pred --HhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchh-------hHHHHHHHHHhc
Q psy7557 248 --SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDE-------KKDWLMEFFDNM 318 (936)
Q Consensus 248 --~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-------k~~~l~~~l~~~ 318 (936)
......+.+++++|||++.+....+.... ...+.....-...... ...++-..... -...+++.+.+.
T Consensus 286 a~~ra~~~~~~~il~SATps~~s~~~~~~g~--~~~~~l~~r~~~~~~p-~v~~id~~~~~~~~~~~~ls~~l~~~i~~~ 362 (679)
T PRK05580 286 AVVRAKLENIPVVLGSATPSLESLANAQQGR--YRLLRLTKRAGGARLP-EVEIIDMRELLRGENGSFLSPPLLEAIKQR 362 (679)
T ss_pred HHHHhhccCCCEEEEcCCCCHHHHHHHhccc--eeEEEeccccccCCCC-eEEEEechhhhhhcccCCCCHHHHHHHHHH
Confidence 22334678999999998766555443321 1111111110000010 11111111100 113355555554
Q ss_pred cCCCCcEEEEeCchH------------------------------------------------------------HHHHH
Q psy7557 319 DEERDKVMVFMGRKA------------------------------------------------------------SVSAM 338 (936)
Q Consensus 319 ~~~~~~~iVF~~~~~------------------------------------------------------------~~~~l 338 (936)
...+.++|||+|++. .++.+
T Consensus 363 l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~ 442 (679)
T PRK05580 363 LERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERL 442 (679)
T ss_pred HHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHH
Confidence 456779999988632 35566
Q ss_pred HHHhhhc--CCceeeecCCCCH--HHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEe--cCCCCc---------
Q psy7557 339 SSDLACQ--YRKSCSLYGDLSQ--EDREIALEDITSGYARICVATDVASRGLDVPDLTHVINY--DFPSHI--------- 403 (936)
Q Consensus 339 ~~~L~~~--~~~~~~~h~~~~~--~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~--d~p~s~--------- 403 (936)
++.|... +.++..+|+++.+ .+++.+++.|++|+.+|||+|+++++|+|+|+|++|+.+ |.+.+.
T Consensus 443 ~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~ 522 (679)
T PRK05580 443 EEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERT 522 (679)
T ss_pred HHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHH
Confidence 7777665 6678889999974 678999999999999999999999999999999998644 545433
Q ss_pred -cccccCCCCcccCCCceeEEEEecccChh
Q psy7557 404 -EEYVHRVGRTGRAGKSGESITLMTRKDWS 432 (936)
Q Consensus 404 -~~y~qr~GRagR~g~~g~~~~~~~~~~~~ 432 (936)
..|+|++||+||.+..|.+++.....+..
T Consensus 523 ~~~l~q~~GRagR~~~~g~viiqT~~p~~~ 552 (679)
T PRK05580 523 FQLLTQVAGRAGRAEKPGEVLIQTYHPEHP 552 (679)
T ss_pred HHHHHHHHhhccCCCCCCEEEEEeCCCCCH
Confidence 46899999999999999999887665544
No 160
>KOG0353|consensus
Probab=99.97 E-value=4e-31 Score=265.76 Aligned_cols=308 Identities=20% Similarity=0.278 Sum_probs=230.0
Q ss_pred hcCCHHHHHHHHh-CCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecC
Q psy7557 601 FQHYPEILRQLEN-LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPT 679 (936)
Q Consensus 601 ~~l~~~~~~~l~~-~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt 679 (936)
|+++.+..+.|++ +....++|.|..+|...++|.|++++.|||.||++||.+|++. ....+|+++|.
T Consensus 76 fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~------------adg~alvi~pl 143 (695)
T KOG0353|consen 76 FPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALC------------ADGFALVICPL 143 (695)
T ss_pred CCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHh------------cCCceEeechh
Confidence 5566666666655 4567889999999999999999999999999999999999983 35679999999
Q ss_pred HHHHHHHHHHHHhccCCCCEEEEEECCccchHHHH---HHh---cCceEEEeCchHHHH---HHHc--CCCCCCCceEEE
Q psy7557 680 RELATQIEREVNKIDYKGLKAVCVYGGKELEPQLE---KIR---EGCHILIATPGRLND---FVSR--ASIDLKAVSFVV 748 (936)
Q Consensus 680 ~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~---~~~~IiV~Tp~~l~~---~l~~--~~~~~~~i~~lV 748 (936)
..|.....-+++.+ |+....+....+.+.... .+- ....++..||+++.. ++.+ ..+....+.++-
T Consensus 144 islmedqil~lkql---gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~ia 220 (695)
T KOG0353|consen 144 ISLMEDQILQLKQL---GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIA 220 (695)
T ss_pred HHHHHHHHHHHHHh---CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEe
Confidence 99966555555554 566655655444433211 111 125799999999853 2221 244567889999
Q ss_pred EcccchhccCC--CHHHHHHH--hhhcCCCceEEEEEecCChHHHHHHHHhcCC--CeEEEeCCCCcccCCceEEEEEEc
Q psy7557 749 LDEADRMLDLG--FEPQINKT--SIYINPNRQTVMTSATWNKDVQRVAKKYMVN--PVKVNVGSLDLAATHTVTQKIIIL 822 (936)
Q Consensus 749 iDEah~l~~~~--~~~~~~~i--~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~ 822 (936)
+||+|+..+|| |++.+..+ +...-++..+++++||.+..+.+-++..+.- ......+.. ..++...+.-.
T Consensus 221 idevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fn----r~nl~yev~qk 296 (695)
T KOG0353|consen 221 IDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFN----RPNLKYEVRQK 296 (695)
T ss_pred ecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccC----CCCceeEeeeC
Confidence 99999999987 77776653 4444478899999999998887766665421 122222221 11222222211
Q ss_pred --CcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecc
Q psy7557 823 --DEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATD 900 (936)
Q Consensus 823 --~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~ 900 (936)
...+-..-+.+++... -.+...||||-+++.|+.++..|..+|+.+..+|+.|.+.+|.-+-+.|-.|+++|+|||-
T Consensus 297 p~n~dd~~edi~k~i~~~-f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatv 375 (695)
T KOG0353|consen 297 PGNEDDCIEDIAKLIKGD-FAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATV 375 (695)
T ss_pred CCChHHHHHHHHHHhccc-cCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEe
Confidence 2223334445555443 3456779999999999999999999999999999999999999999999999999999999
Q ss_pred cCccCCCCCCCCEEEEccCCCChhhhHh
Q psy7557 901 VASRGLDVPDLTHVINYDFPSHIEEYVH 928 (936)
Q Consensus 901 ~~~~Gidip~v~~VI~~d~p~s~~~yiq 928 (936)
++++|||-|+|++|||..+|.|++.|.|
T Consensus 376 afgmgidkpdvrfvihhsl~ksienyyq 403 (695)
T KOG0353|consen 376 AFGMGIDKPDVRFVIHHSLPKSIENYYQ 403 (695)
T ss_pred eecccCCCCCeeEEEecccchhHHHHHH
Confidence 9999999999999999999999999999
No 161
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=1.4e-30 Score=298.80 Aligned_cols=291 Identities=14% Similarity=0.191 Sum_probs=203.0
Q ss_pred CCcHHHHHHHHhhh-cC--CcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhcc
Q psy7557 618 TPSPIQAQAWPILM-SG--HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID 694 (936)
Q Consensus 618 ~p~~iQ~~ai~~~l-~g--~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 694 (936)
.++|+|.+|+..++ +| +..++++|||+|||++.+..+. .+ +.++|||||+.+|+.|+.+++.++.
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l-----------~k~tLILvps~~Lv~QW~~ef~~~~ 322 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TV-----------KKSCLVLCTSAVSVEQWKQQFKMWS 322 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-Hh-----------CCCEEEEeCcHHHHHHHHHHHHHhc
Confidence 78999999999887 34 4789999999999998775443 22 3469999999999999999999984
Q ss_pred C-CCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcC--------CCCCCCceEEEEcccchhccCCCHHHHH
Q psy7557 695 Y-KGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRA--------SIDLKAVSFVVLDEADRMLDLGFEPQIN 765 (936)
Q Consensus 695 ~-~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~--------~~~~~~i~~lViDEah~l~~~~~~~~~~ 765 (936)
. ....+...+|+.... .....+|+|+|...+.....+. .+.-..+++||+||||++... .+.
T Consensus 323 ~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~----~fr 393 (732)
T TIGR00603 323 TIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAA----MFR 393 (732)
T ss_pred CCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHH----HHH
Confidence 3 334555555543221 1123689999998775322211 122356889999999998643 344
Q ss_pred HHhhhcCCCceEEEEEecCChHHHH--HHHHhcCCCeEEEeCCCCcccCCceEE---E----------------------
Q psy7557 766 KTSIYINPNRQTVMTSATWNKDVQR--VAKKYMVNPVKVNVGSLDLAATHTVTQ---K---------------------- 818 (936)
Q Consensus 766 ~i~~~~~~~~q~v~~SAT~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~---~---------------------- 818 (936)
.+...+. ....+++|||+.+.-.. ... ++..|..+.....+......+.. .
T Consensus 394 ~il~~l~-a~~RLGLTATP~ReD~~~~~L~-~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k 471 (732)
T TIGR00603 394 RVLTIVQ-AHCKLGLTATLVREDDKITDLN-FLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKR 471 (732)
T ss_pred HHHHhcC-cCcEEEEeecCcccCCchhhhh-hhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhh
Confidence 4444443 33569999998643221 111 22234433332211111111100 0
Q ss_pred -EEEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcC-CCcEE
Q psy7557 819 -IIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSG-YARIC 896 (936)
Q Consensus 819 -~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g-~~~vL 896 (936)
.....+..|...+..++..+...+.++||||++...+..++..| ++..+||++++.+|..+++.|++| .+++|
T Consensus 472 ~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L-----~~~~I~G~ts~~ER~~il~~Fr~~~~i~vL 546 (732)
T TIGR00603 472 MLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL-----GKPFIYGPTSQQERMQILQNFQHNPKVNTI 546 (732)
T ss_pred hHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc-----CCceEECCCCHHHHHHHHHHHHhCCCccEE
Confidence 01112234455555566554346779999999999999998887 356799999999999999999975 78999
Q ss_pred EecccCccCCCCCCCCEEEEccCC-CChhhhHhhhhhccCC
Q psy7557 897 VATDVASRGLDVPDLTHVINYDFP-SHIEEYVHRVGRTGEF 936 (936)
Q Consensus 897 VaT~~~~~Gidip~v~~VI~~d~p-~s~~~yiqr~GRaGR~ 936 (936)
|+|+++.+|||+|++++||+++.| .|...|+||+||++|.
T Consensus 547 v~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~ 587 (732)
T TIGR00603 547 FLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRA 587 (732)
T ss_pred EEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccC
Confidence 999999999999999999999998 5999999999999994
No 162
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=3.3e-30 Score=311.25 Aligned_cols=314 Identities=21% Similarity=0.296 Sum_probs=221.7
Q ss_pred CCCCCCcHHHH--H-HHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q psy7557 94 LSFTTPSPIQA--Q-AWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREV 170 (936)
Q Consensus 94 ~g~~~~~~~Q~--~-ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~ 170 (936)
..|...-|+.. . .+..+.+++.++++|+||||||. .+|.+...... ....++++.-|.|--|..++..+
T Consensus 60 ~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~~------~~~~~I~~tQPRRlAA~svA~Rv 131 (1283)
T TIGR01967 60 IRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTT--QLPKICLELGR------GSHGLIGHTQPRRLAARTVAQRI 131 (1283)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcCC------CCCceEecCCccHHHHHHHHHHH
Confidence 45655556544 3 33444455677888999999999 57866543211 22346778889988888888777
Q ss_pred HhccCCCCEEEEEeCCc-cchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccch-hhhcCCCHHH-HHHH
Q psy7557 171 NKIDYKGLKAVCVYGGK-EIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEAD-RMLDLGFEPQ-INKT 247 (936)
Q Consensus 171 ~~~~~~~~~~~~~~gg~-~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah-~l~~~~~~~~-~~~i 247 (936)
.+.. +.+++...|.. ....+ ...++.|.|+|||+|++.+.... .++++++||||||| ++++.+|.-. +..+
T Consensus 132 A~el--g~~lG~~VGY~vR~~~~---~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~i 205 (1283)
T TIGR01967 132 AEEL--GTPLGEKVGYKVRFHDQ---VSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQL 205 (1283)
T ss_pred HHHh--CCCcceEEeeEEcCCcc---cCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHH
Confidence 6631 23333333321 11111 12358999999999999887654 48999999999999 6899887765 4555
Q ss_pred HhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCc------hhhHHHHHHHHHhc-cC
Q psy7557 248 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDE------DEKKDWLMEFFDNM-DE 320 (936)
Q Consensus 248 ~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~k~~~l~~~l~~~-~~ 320 (936)
+. .+++.|+++||||++. ..+++.|...|+ +.+... ...+...+..... .++...+...+... ..
T Consensus 206 l~-~rpdLKlIlmSATld~--~~fa~~F~~apv-I~V~Gr----~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~ 277 (1283)
T TIGR01967 206 LP-RRPDLKIIITSATIDP--ERFSRHFNNAPI-IEVSGR----TYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAE 277 (1283)
T ss_pred Hh-hCCCCeEEEEeCCcCH--HHHHHHhcCCCE-EEECCC----cccceeEEecccccccchhhhHHHHHHHHHHHHHhh
Confidence 43 3568899999999974 467776665564 444332 1234444333221 12333344434332 23
Q ss_pred CCCcEEEEeCchHHHHHHHHHhhhcCC---ceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEe
Q psy7557 321 ERDKVMVFMGRKASVSAMSSDLACQYR---KSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINY 397 (936)
Q Consensus 321 ~~~~~iVF~~~~~~~~~l~~~L~~~~~---~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~ 397 (936)
..+.+|||++++.+++.+++.|...+. .+..+||+|++++|..+++.+ +..+|+||||++++|||||+|++||++
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDs 355 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDT 355 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeC
Confidence 468999999999999999999987653 477899999999999997654 346999999999999999999999999
Q ss_pred cCCC------------------CccccccCCCCcccCCCceeEEEEecccChh
Q psy7557 398 DFPS------------------HIEEYVHRVGRTGRAGKSGESITLMTRKDWS 432 (936)
Q Consensus 398 d~p~------------------s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~ 432 (936)
+.++ |.++|.||.|||||.| +|.|+.++++.+..
T Consensus 356 Gl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 356 GTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFN 407 (1283)
T ss_pred CCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHH
Confidence 9643 5579999999999998 99999999987653
No 163
>KOG0951|consensus
Probab=99.97 E-value=2.2e-30 Score=295.20 Aligned_cols=315 Identities=19% Similarity=0.247 Sum_probs=231.9
Q ss_pred CCCCCCcHHHHHHHHhhhcC-CcEEEEecCCCCcchhhHHHHHHHhhccCCC--CccCCCCEEEEEecCHHHHHHHHHHH
Q psy7557 614 LSFTTPSPIQAQAWPILMSG-HDMIGIAQTGTGKTFAFLLPALIHTHLQTTP--ISERAGPSVLVMAPTRELATQIEREV 690 (936)
Q Consensus 614 ~g~~~p~~iQ~~ai~~~l~g-~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~--~~~~~~~~~lil~Pt~~La~Q~~~~~ 690 (936)
.|..+++++|....+.++.+ .|+++|||||+|||.++++-+++.+-..... .......+++|++|+++|++.+...+
T Consensus 305 ~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~Vgsf 384 (1674)
T KOG0951|consen 305 FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSF 384 (1674)
T ss_pred ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHH
Confidence 47778999999999999976 5999999999999999999999887543321 11123458999999999999887776
Q ss_pred Hh-ccCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCC--CCCCCceEEEEcccchhccCCCHHHHHHH
Q psy7557 691 NK-IDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRAS--IDLKAVSFVVLDEADRMLDLGFEPQINKT 767 (936)
Q Consensus 691 ~~-~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~--~~~~~i~~lViDEah~l~~~~~~~~~~~i 767 (936)
.+ +...|+++...+|......+.. .+..|+|+|||+|.-+-+++. ...+-++++|+||.|.+.| ...+.++.|
T Consensus 385 SkRla~~GI~V~ElTgD~~l~~~qi---eeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhD-dRGpvLESI 460 (1674)
T KOG0951|consen 385 SKRLAPLGITVLELTGDSQLGKEQI---EETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHD-DRGPVLESI 460 (1674)
T ss_pred HhhccccCcEEEEecccccchhhhh---hcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhccc-ccchHHHHH
Confidence 55 5688999999999876544322 357999999999955544432 2245688999999996644 345555554
Q ss_pred hhhc-------CCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchh-------HHHHHH
Q psy7557 768 SIYI-------NPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEK-------KDWLME 833 (936)
Q Consensus 768 ~~~~-------~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k-------~~~l~~ 833 (936)
.... ...++++++|||+| +..+.+..+..++..+....... .+..+.|.++-+..... ++..++
T Consensus 461 VaRt~r~ses~~e~~RlVGLSATLP-Ny~DV~~Fl~v~~~glf~fd~sy-RpvPL~qq~Igi~ek~~~~~~qamNe~~ye 538 (1674)
T KOG0951|consen 461 VARTFRRSESTEEGSRLVGLSATLP-NYEDVASFLRVDPEGLFYFDSSY-RPVPLKQQYIGITEKKPLKRFQAMNEACYE 538 (1674)
T ss_pred HHHHHHHhhhcccCceeeeecccCC-chhhhHHHhccCcccccccCccc-CcCCccceEeccccCCchHHHHHHHHHHHH
Confidence 4432 35789999999997 45566665555554443332222 23334555544433221 122222
Q ss_pred HHHhccCCCCcEEEEcCChHHHHHHHHHHHh-------------------------------------cCCceEEEeCCC
Q psy7557 834 FFDNMDEERDKVMVFMGRKASVSAMSSDLAC-------------------------------------QYRKSCSLYGDL 876 (936)
Q Consensus 834 ~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~-------------------------------------~~~~~~~~h~~l 876 (936)
-+-.+ ....++||||.+|+++-+.|..++. +.++.+.||+||
T Consensus 539 KVm~~-agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl 617 (1674)
T KOG0951|consen 539 KVLEH-AGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGL 617 (1674)
T ss_pred HHHHh-CCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCC
Confidence 22223 2448999999999999888888762 134678899999
Q ss_pred CHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEE----ccC------CCChhhhHhhhhhccC
Q psy7557 877 SQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVIN----YDF------PSHIEEYVHRVGRTGE 935 (936)
Q Consensus 877 ~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~----~d~------p~s~~~yiqr~GRaGR 935 (936)
+..+|..+++.|++|.++|||+|.+++||+|+|+..++|- ||+ +.++.+.+||.|||||
T Consensus 618 ~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragr 686 (1674)
T KOG0951|consen 618 NRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGR 686 (1674)
T ss_pred CcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCC
Confidence 9999999999999999999999999999999999888884 664 4678999999999999
No 164
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.97 E-value=1.5e-29 Score=304.33 Aligned_cols=284 Identities=22% Similarity=0.321 Sum_probs=196.6
Q ss_pred HHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecC----HHHHHHHHHHHHhccCCCCEEE
Q psy7557 626 AWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPT----RELATQIEREVNKIDYKGLKAV 701 (936)
Q Consensus 626 ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt----~~La~Q~~~~~~~~~~~~~~~~ 701 (936)
.+..+..++.++++|+||||||. .+|.+..... .+....+++..|. ++||.|+.+++..- .|-.++
T Consensus 82 Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g------~g~~g~I~~TQPRRlAArsLA~RVA~El~~~--lG~~VG 151 (1294)
T PRK11131 82 ILEAIRDHQVVIVAGETGSGKTT--QLPKICLELG------RGVKGLIGHTQPRRLAARTVANRIAEELETE--LGGCVG 151 (1294)
T ss_pred HHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcC------CCCCCceeeCCCcHHHHHHHHHHHHHHHhhh--hcceec
Confidence 34444455677888999999999 6886544321 1122345555675 67777877777641 122221
Q ss_pred EEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccc-hhccCCCHHH-HHHHhhhcCCCceEEE
Q psy7557 702 CVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEAD-RMLDLGFEPQ-INKTSIYINPNRQTVM 779 (936)
Q Consensus 702 ~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah-~l~~~~~~~~-~~~i~~~~~~~~q~v~ 779 (936)
.-. ...++ ...+++|+|+|||+|.+.+..... ++++++||||||| ++++.+|... +..+.. .+++.|+|+
T Consensus 152 Y~v---rf~~~---~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~-~rpdlKvIL 223 (1294)
T PRK11131 152 YKV---RFNDQ---VSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILGYLKELLP-RRPDLKVII 223 (1294)
T ss_pred eee---cCccc---cCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHHHHHHhhh-cCCCceEEE
Confidence 111 11111 234689999999999999886654 8999999999999 6888887653 333322 236789999
Q ss_pred EEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcch---hHHHHHHHH---Hhc-cCCCCcEEEEcCCh
Q psy7557 780 TSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDE---KKDWLMEFF---DNM-DEERDKVMVFMGRK 852 (936)
Q Consensus 780 ~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---k~~~l~~~l---~~~-~~~~~~~iIF~~s~ 852 (936)
||||++. ..+.+.|...|+ +.+.... ..+...+....... +.+.+..++ ... ....+.+||||++.
T Consensus 224 mSATid~--e~fs~~F~~apv-I~V~Gr~----~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~ 296 (1294)
T PRK11131 224 TSATIDP--ERFSRHFNNAPI-IEVSGRT----YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGE 296 (1294)
T ss_pred eeCCCCH--HHHHHHcCCCCE-EEEcCcc----ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCH
Confidence 9999964 467777766664 4444322 22333333332211 233333322 211 23457899999999
Q ss_pred HHHHHHHHHHHhcCCc---eEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEEccC----------
Q psy7557 853 ASVSAMSSDLACQYRK---SCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDF---------- 919 (936)
Q Consensus 853 ~~~~~l~~~L~~~~~~---~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~---------- 919 (936)
.+++.++..|...+.+ +..+||+|++.+|..+++. .|..+|||||+++++|||+|+|++||++|.
T Consensus 297 ~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~ 374 (1294)
T PRK11131 297 REIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRT 374 (1294)
T ss_pred HHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCcccccccccc
Confidence 9999999999987754 5689999999999999886 578899999999999999999999999863
Q ss_pred -----C---CChhhhHhhhhhccCC
Q psy7557 920 -----P---SHIEEYVHRVGRTGEF 936 (936)
Q Consensus 920 -----p---~s~~~yiqr~GRaGR~ 936 (936)
| .|..+|.||+|||||.
T Consensus 375 ~~~~Lp~~~iSkasa~QRaGRAGR~ 399 (1294)
T PRK11131 375 KVQRLPIEPISQASANQRKGRCGRV 399 (1294)
T ss_pred CcccCCeeecCHhhHhhhccccCCC
Confidence 3 4568899999999994
No 165
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=8.2e-30 Score=293.95 Aligned_cols=382 Identities=19% Similarity=0.265 Sum_probs=262.7
Q ss_pred hhhhcccCCccccccCcCCccccCCCHHHHHHHHhhCCCceEEeecCCCccCCCCCCCCCCcccChHHhhcCCHHHHHH-
Q psy7557 12 ERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQ- 90 (936)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~f~~~~~~~~~l~~~- 90 (936)
......++.++...+..-.+++..+++++...-...+..- +. .+.. .+ . -..++|.+ +.++
T Consensus 14 ~~r~lk~~~~~~~~i~~~~~~~~~lsd~eL~~~t~~~k~~-l~----~~~~-----ld---~--~l~eafA~---vrEa~ 75 (896)
T PRK13104 14 NERTLRRMEKSVMAINAFEPKMQALSNEELAGKTQEFKER-FN----NGES-----LD---E--LLAEAFAT---VREVS 75 (896)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HH----cCCc-----hH---H--HHHHHHHH---HHHHH
Confidence 3345556666677777777889999998876433222100 00 0100 00 0 00111211 1222
Q ss_pred HHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q psy7557 91 LENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREV 170 (936)
Q Consensus 91 l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~ 170 (936)
-..+|. .|+++|.-+--.+..|+ |+.++||+|||++|.+|++...+ .|..++|++||++||.|.++.+
T Consensus 76 ~R~lg~-~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al---------~G~~V~VvTpn~yLA~qd~e~m 143 (896)
T PRK13104 76 LRTLGL-RHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAI---------SGRGVHIVTVNDYLAKRDSQWM 143 (896)
T ss_pred HHHcCC-CcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHh---------cCCCEEEEcCCHHHHHHHHHHH
Confidence 223565 78999988777777776 99999999999999999997764 2456999999999999999999
Q ss_pred Hhc-cCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchh-HHHHHcC-CcCC-----CCceEEEEccchhhh-cCC--
Q psy7557 171 NKI-DYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRL-NDFVSRA-SIDL-----KAVSFVVLDEADRML-DLG-- 239 (936)
Q Consensus 171 ~~~-~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~-~~~~-----~~~~~lViDEah~l~-~~~-- 239 (936)
..+ ...|+++.+++||.+........ .+||+||||++| .|++..+ .+.+ ..+.++|+||||.|+ |..
T Consensus 144 ~~l~~~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArt 221 (896)
T PRK13104 144 KPIYEFLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEART 221 (896)
T ss_pred HHHhcccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCC
Confidence 995 56799999999998776654433 589999999999 8988876 3334 589999999999876 211
Q ss_pred -------------CHHHHHHHHhhcCC--------------CCcEEEEEec-----------------------------
Q psy7557 240 -------------FEPQINKTSIYINP--------------NRQTVMTSAT----------------------------- 263 (936)
Q Consensus 240 -------------~~~~~~~i~~~~~~--------------~~q~~~~SAT----------------------------- 263 (936)
....+..+...+.+ ....+.+|-.
T Consensus 222 PLIISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~ 301 (896)
T PRK13104 222 PLIISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIML 301 (896)
T ss_pred ceeeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhH
Confidence 11122222222211 1122222221
Q ss_pred --------------------------------------------------------------------------------
Q psy7557 264 -------------------------------------------------------------------------------- 263 (936)
Q Consensus 264 -------------------------------------------------------------------------------- 263 (936)
T Consensus 302 ~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~k 381 (896)
T PRK13104 302 MHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNK 381 (896)
T ss_pred HHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcch
Confidence
Q ss_pred -------cchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCchHHHH
Q psy7557 264 -------WNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVS 336 (936)
Q Consensus 264 -------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~ 336 (936)
.......+..-|-.+.+.|.... .....-....++....+|...+.+.+......+.|+||||+|+..++
T Consensus 382 LsGMTGTa~te~~Ef~~iY~l~Vv~IPtnk---p~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE 458 (896)
T PRK13104 382 LSGMTGTADTEAYEFQQIYNLEVVVIPTNR---SMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASE 458 (896)
T ss_pred hccCCCCChhHHHHHHHHhCCCEEECCCCC---CcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHH
Confidence 11111111111111111110000 00000112235566778888888888777788999999999999999
Q ss_pred HHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCC--------------------------
Q psy7557 337 AMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPD-------------------------- 390 (936)
Q Consensus 337 ~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~-------------------------- 390 (936)
.++..|...++++..+|+.+.+.+|..+.+.|+.|. |+|||++++||+||.=
T Consensus 459 ~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~ 536 (896)
T PRK13104 459 FLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKE 536 (896)
T ss_pred HHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHH
Confidence 999999999999999999999999999999999995 9999999999999961
Q ss_pred ------------CcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccC
Q psy7557 391 ------------LTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430 (936)
Q Consensus 391 ------------v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~ 430 (936)
==+||--..+.|..-=-|-.|||||-|.+|.+-.|++-+|
T Consensus 537 ~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD 588 (896)
T PRK13104 537 WQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 588 (896)
T ss_pred hhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 1267877788888888999999999999999999999776
No 166
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.97 E-value=2.3e-28 Score=288.25 Aligned_cols=299 Identities=19% Similarity=0.186 Sum_probs=207.5
Q ss_pred CCcHHHHHHHHhhhcC---CcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhcc
Q psy7557 618 TPSPIQAQAWPILMSG---HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID 694 (936)
Q Consensus 618 ~p~~iQ~~ai~~~l~g---~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 694 (936)
.+++.|.++++.+..+ +++++.|+||||||.+|+.++...+ ..|.++||++||++|+.|+.+.+++.
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l---------~~g~~vLvLvPt~~L~~Q~~~~l~~~- 213 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVL---------AQGKQALVLVPEIALTPQMLARFRAR- 213 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHH---------HcCCeEEEEeCcHHHHHHHHHHHHHH-
Confidence 6899999999999874 7899999999999999988776554 23678999999999999999999874
Q ss_pred CCCCEEEEEECCccchHHHHH---Hhc-CceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCC---CHHHHHH-
Q psy7557 695 YKGLKAVCVYGGKELEPQLEK---IRE-GCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLG---FEPQINK- 766 (936)
Q Consensus 695 ~~~~~~~~~~gg~~~~~~~~~---l~~-~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~---~~~~~~~- 766 (936)
.+.++..++|+.+....... +.. .++|+||||+.+. ..++++++||+||+|...... .....+.
T Consensus 214 -fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~v 285 (679)
T PRK05580 214 -FGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDL 285 (679)
T ss_pred -hCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHH
Confidence 25678889998776544333 333 4799999998763 457899999999999765332 1111222
Q ss_pred -HhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCc------chhHHHHHHHHHhcc
Q psy7557 767 -TSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDE------DEKKDWLMEFFDNMD 839 (936)
Q Consensus 767 -i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~k~~~l~~~l~~~~ 839 (936)
+......+.+++++|||++......+... ....+................+..... ..-...+.+.++...
T Consensus 286 a~~ra~~~~~~~il~SATps~~s~~~~~~g--~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l 363 (679)
T PRK05580 286 AVVRAKLENIPVVLGSATPSLESLANAQQG--RYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRL 363 (679)
T ss_pred HHHHhhccCCCEEEEcCCCCHHHHHHHhcc--ceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHH
Confidence 22233568899999999875554443321 111111111100000000111111000 001133555555555
Q ss_pred CCCCcEEEEcCChH------------------------------------------------------------HHHHHH
Q psy7557 840 EERDKVMVFMGRKA------------------------------------------------------------SVSAMS 859 (936)
Q Consensus 840 ~~~~~~iIF~~s~~------------------------------------------------------------~~~~l~ 859 (936)
..+.++|||+|++. .++.++
T Consensus 364 ~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~ 443 (679)
T PRK05580 364 ERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLE 443 (679)
T ss_pred HcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHH
Confidence 56678999988632 345667
Q ss_pred HHHHhc--CCceEEEeCCCCH--HHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEE--EccCCCCh----------
Q psy7557 860 SDLACQ--YRKSCSLYGDLSQ--EDREIALEDITSGYARICVATDVASRGLDVPDLTHVI--NYDFPSHI---------- 923 (936)
Q Consensus 860 ~~L~~~--~~~~~~~h~~l~~--~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI--~~d~p~s~---------- 923 (936)
+.|... +.++..+|+++++ .+++.+++.|++|+.+|||+|+++++|+|+|++++|+ ++|.+.+.
T Consensus 444 e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~ 523 (679)
T PRK05580 444 EELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTF 523 (679)
T ss_pred HHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHH
Confidence 777665 5678899999874 6799999999999999999999999999999999985 55555433
Q ss_pred hhhHhhhhhccCC
Q psy7557 924 EEYVHRVGRTGEF 936 (936)
Q Consensus 924 ~~yiqr~GRaGR~ 936 (936)
..|+|++||+||+
T Consensus 524 ~~l~q~~GRagR~ 536 (679)
T PRK05580 524 QLLTQVAGRAGRA 536 (679)
T ss_pred HHHHHHHhhccCC
Confidence 5689999999994
No 167
>KOG0947|consensus
Probab=99.96 E-value=7.6e-29 Score=276.27 Aligned_cols=339 Identities=19% Similarity=0.211 Sum_probs=247.3
Q ss_pred hCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHh
Q psy7557 93 NLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK 172 (936)
Q Consensus 93 ~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 172 (936)
..+| +|-.+|++||.++.+|..+++.|+|.+|||+++-.++.... ..+.+++|.+|-++|.+|-++.|+.
T Consensus 293 ~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq---------~h~TR~iYTSPIKALSNQKfRDFk~ 362 (1248)
T KOG0947|consen 293 IYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ---------KHMTRTIYTSPIKALSNQKFRDFKE 362 (1248)
T ss_pred hCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH---------hhccceEecchhhhhccchHHHHHH
Confidence 4567 79999999999999999999999999999999876654332 3467899999999999999999987
Q ss_pred -ccCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHHHhhc
Q psy7557 173 -IDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYI 251 (936)
Q Consensus 173 -~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~ 251 (936)
|+..| .++|+...... ..++|.|.|.|..++-++.--++++.++||||+|-+.|...+..++.++.++
T Consensus 363 tF~Dvg----LlTGDvqinPe-------AsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMl 431 (1248)
T KOG0947|consen 363 TFGDVG----LLTGDVQINPE-------ASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIML 431 (1248)
T ss_pred hccccc----eeecceeeCCC-------cceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeec
Confidence 54433 78888776544 7899999999999999988778999999999999999999999999999999
Q ss_pred CCCCcEEEEEeccchHHHHHHHHhcCC---CEEEEeCCCCcccCCceEEEEEEeCc------------------------
Q psy7557 252 NPNRQTVMTSATWNKDVQRVAKKYMVN---PVKVNVGSLDLAATHTVTQKIIILDE------------------------ 304 (936)
Q Consensus 252 ~~~~q~~~~SAT~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~------------------------ 304 (936)
|+..++|++|||.|+ ..+++.+..+- -+.+.-.. ..+.++.+.+..-.+
T Consensus 432 P~HV~~IlLSATVPN-~~EFA~WIGRtK~K~IyViST~---kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~ 507 (1248)
T KOG0947|consen 432 PRHVNFILLSATVPN-TLEFADWIGRTKQKTIYVISTS---KRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLK 507 (1248)
T ss_pred cccceEEEEeccCCC-hHHHHHHhhhccCceEEEEecC---CCccceEEEEEeccceehhhcccchhhhhcchhhhhhhc
Confidence 999999999999994 44666665431 11111100 111111111110000
Q ss_pred ---------------------------------------hhhH--HHHHHHHHhcc-CCCCcEEEEeCchHHHHHHHHHh
Q psy7557 305 ---------------------------------------DEKK--DWLMEFFDNMD-EERDKVMVFMGRKASVSAMSSDL 342 (936)
Q Consensus 305 ---------------------------------------~~k~--~~l~~~l~~~~-~~~~~~iVF~~~~~~~~~l~~~L 342 (936)
.++. .....++..+. ..--|++|||-+++.|++.+..|
T Consensus 508 ~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L 587 (1248)
T KOG0947|consen 508 KEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYL 587 (1248)
T ss_pred ccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHH
Confidence 0011 01222222221 23348999999999999999988
Q ss_pred hhc---------------------------------------CCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccc
Q psy7557 343 ACQ---------------------------------------YRKSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 383 (936)
Q Consensus 343 ~~~---------------------------------------~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~ 383 (936)
... ..++++||||+-+--++-++..|..|-++||+||.++|
T Consensus 588 ~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFA 667 (1248)
T KOG0947|consen 588 TNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFA 667 (1248)
T ss_pred hccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhh
Confidence 621 23567799999999999999999999999999999999
Q ss_pred cCCCCCCCcEEEEecC--------CCCccccccCCCCcccCCCc--eeEEEEecccChhhHHhHHHHHhhcCCccchhhh
Q psy7557 384 RGLDVPDLTHVINYDF--------PSHIEEYVHRVGRTGRAGKS--GESITLMTRKDWSHAHEIIPILEEGGHESYMIWR 453 (936)
Q Consensus 384 ~GiDip~v~~VI~~d~--------p~s~~~y~qr~GRagR~g~~--g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 453 (936)
+|||+|+-.+|+.-=. --.+-+|.||+|||||.|-. |+.+++.... ......+.+++...-......++
T Consensus 668 MGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~-vp~~a~l~~li~G~~~~L~SQFR 746 (1248)
T KOG0947|consen 668 MGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS-VPSAATLKRLIMGGPTRLESQFR 746 (1248)
T ss_pred hhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC-CCCHHHHhhHhcCCCchhhhhhh
Confidence 9999998877773211 12678999999999999876 5555554433 35555555555544433333344
Q ss_pred hccc
Q psy7557 454 RDSR 457 (936)
Q Consensus 454 ~~~~ 457 (936)
....
T Consensus 747 lTY~ 750 (1248)
T KOG0947|consen 747 LTYG 750 (1248)
T ss_pred hHHH
Confidence 4333
No 168
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=9.8e-29 Score=285.21 Aligned_cols=380 Identities=20% Similarity=0.249 Sum_probs=269.2
Q ss_pred hhcccCCccccccCcCCccccCCCHHHHHHHHhhCCCceEEeecCCCccCCCCCCCCCCcccChHHhhcCCHHHHHHH-H
Q psy7557 14 DKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQL-E 92 (936)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~f~~~~~~~~~l~~~l-~ 92 (936)
+...++.++...+..-.+....+|+++..........- + ..|.. . .. ...++|.+ +.++. .
T Consensus 15 ~~l~~~~~~~~~i~~~~~~~~~lsd~eL~~~t~~~~~r-l----~~g~~-------l-d~--~l~eafA~---vrEa~~R 76 (830)
T PRK12904 15 RELKRLRKIVDKINALEPEMEKLSDEELKAKTAEFKER-L----AKGET-------L-DD--LLPEAFAV---VREASKR 76 (830)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-H----HcCCC-------h-hH--HHHHHHHH---HHHHHHH
Confidence 34455556666666677889999998876543322100 0 01100 0 00 01122221 22222 2
Q ss_pred hCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHh
Q psy7557 93 NLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK 172 (936)
Q Consensus 93 ~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 172 (936)
.+|. .|+++|.-+.-.+..|+ |+.++||+|||++|.+|++...+. |..+-|++||..||.|.++.+..
T Consensus 77 ~lg~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~---------G~~V~IvTpn~yLA~rd~e~~~~ 144 (830)
T PRK12904 77 VLGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALT---------GKGVHVVTVNDYLAKRDAEWMGP 144 (830)
T ss_pred HhCC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc---------CCCEEEEecCHHHHHHHHHHHHH
Confidence 3566 89999999888887876 999999999999999999755432 34577999999999999999999
Q ss_pred c-cCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchh-HHHHHcCC------cCCCCceEEEEccchhhh-cCC----
Q psy7557 173 I-DYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRL-NDFVSRAS------IDLKAVSFVVLDEADRML-DLG---- 239 (936)
Q Consensus 173 ~-~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~------~~~~~~~~lViDEah~l~-~~~---- 239 (936)
+ ...|+++.+++||.+...+.... .++|+++||+++ .|++..+. ..++.+.++|+||||.|+ |..
T Consensus 145 l~~~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpL 222 (830)
T PRK12904 145 LYEFLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPL 222 (830)
T ss_pred HHhhcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCce
Confidence 5 57899999999998877665553 489999999999 88887654 236789999999999876 100
Q ss_pred -----------CHHHHHHHHhhcCC--------CC---------------------------------------------
Q psy7557 240 -----------FEPQINKTSIYINP--------NR--------------------------------------------- 255 (936)
Q Consensus 240 -----------~~~~~~~i~~~~~~--------~~--------------------------------------------- 255 (936)
....+..+...+.. ..
T Consensus 223 iiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~ 302 (830)
T PRK12904 223 IISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFK 302 (830)
T ss_pred eeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHh
Confidence 11122222222211 01
Q ss_pred ----------------------------------------------------------------cEEEEEeccchHHHHH
Q psy7557 256 ----------------------------------------------------------------QTVMTSATWNKDVQRV 271 (936)
Q Consensus 256 ----------------------------------------------------------------q~~~~SAT~~~~~~~~ 271 (936)
.+.+||.|.......+
T Consensus 303 ~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~ 382 (830)
T PRK12904 303 RDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEF 382 (830)
T ss_pred cCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHH
Confidence 2334444444333344
Q ss_pred HHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceee
Q psy7557 272 AKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCS 351 (936)
Q Consensus 272 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~ 351 (936)
...|..+.+.|...... ...-....++....+|...+.+.+......+.|+||||+|+..++.++..|...++++..
T Consensus 383 ~~iY~l~vv~IPtnkp~---~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~v 459 (830)
T PRK12904 383 REIYNLDVVVIPTNRPM---IRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNV 459 (830)
T ss_pred HHHhCCCEEEcCCCCCe---eeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEe
Confidence 44443333322211100 000112245567778999999888776567889999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCC--------------------------------------cE
Q psy7557 352 LYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDL--------------------------------------TH 393 (936)
Q Consensus 352 ~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v--------------------------------------~~ 393 (936)
+||. +.+|+..+..|+.+...|+||||+++||+||+== =+
T Consensus 460 Lnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLh 537 (830)
T PRK12904 460 LNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLH 537 (830)
T ss_pred ccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCE
Confidence 9995 8899999999999999999999999999999742 26
Q ss_pred EEEecCCCCccccccCCCCcccCCCceeEEEEecccC
Q psy7557 394 VINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430 (936)
Q Consensus 394 VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~ 430 (936)
||-...|.|..---|-.|||||-|.+|.+-.|++-+|
T Consensus 538 VigTerhesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 538 VIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred EEecccCchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 8888889999999999999999999999999999776
No 169
>PRK09694 helicase Cas3; Provisional
Probab=99.96 E-value=3.5e-28 Score=287.59 Aligned_cols=308 Identities=18% Similarity=0.199 Sum_probs=202.9
Q ss_pred CCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhcc--
Q psy7557 617 TTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID-- 694 (936)
Q Consensus 617 ~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~-- 694 (936)
..|+|+|..+......+..+++.||||+|||.+++.++..... .+...+++|..||+++++|+++++.++.
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~-------~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~ 357 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLID-------QGLADSIIFALPTQATANAMLSRLEALASK 357 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHH-------hCCCCeEEEECcHHHHHHHHHHHHHHHHHH
Confidence 3899999988655445667899999999999998876654331 1335689999999999999999987631
Q ss_pred -CCCCEEEEEECCccchHHH---------------------HHHh---c---CceEEEeCchHHHHHHHc-CCCCCCCc-
Q psy7557 695 -YKGLKAVCVYGGKELEPQL---------------------EKIR---E---GCHILIATPGRLNDFVSR-ASIDLKAV- 744 (936)
Q Consensus 695 -~~~~~~~~~~gg~~~~~~~---------------------~~l~---~---~~~IiV~Tp~~l~~~l~~-~~~~~~~i- 744 (936)
.....+...+|........ ..+. + -.+|+|||+..++..... +...++.+
T Consensus 358 ~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~ 437 (878)
T PRK09694 358 LFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFG 437 (878)
T ss_pred hcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHh
Confidence 2234667777765422111 1111 1 168999999887643332 22223333
Q ss_pred ---eEEEEcccchhccCCCHHHHHHHhhhc-CCCceEEEEEecCChHHHHH-HHHhcCC-CeE-------EE-eCC---C
Q psy7557 745 ---SFVVLDEADRMLDLGFEPQINKTSIYI-NPNRQTVMTSATWNKDVQRV-AKKYMVN-PVK-------VN-VGS---L 807 (936)
Q Consensus 745 ---~~lViDEah~l~~~~~~~~~~~i~~~~-~~~~q~v~~SAT~~~~~~~~-~~~~~~~-~~~-------i~-~~~---~ 807 (936)
++|||||+|.+ +......+..++..+ .....+|+||||+|...+.. ...+... +.. +. ... .
T Consensus 438 La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~ 516 (878)
T PRK09694 438 LGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQ 516 (878)
T ss_pred hccCeEEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccce
Confidence 48999999975 333333444444433 34678999999999877653 3333211 100 00 000 0
Q ss_pred CcccC-C----ceEEEEEE--c--Cc-chhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcC---CceEEEeC
Q psy7557 808 DLAAT-H----TVTQKIII--L--DE-DEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQY---RKSCSLYG 874 (936)
Q Consensus 808 ~~~~~-~----~~~~~~~~--~--~~-~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~---~~~~~~h~ 874 (936)
..... . .....+.+ . .. ......+..++... ..+++++|||||++.|+.++..|...+ ..+..+||
T Consensus 517 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~-~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHs 595 (878)
T PRK09694 517 RFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA-NAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHA 595 (878)
T ss_pred eeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHH-hcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeC
Confidence 00000 0 01111111 1 11 11122233333332 456789999999999999999998765 57899999
Q ss_pred CCCHHHHH----HHHHHh-hcCC---CcEEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 875 DLSQEDRE----IALEDI-TSGY---ARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 875 ~l~~~~R~----~~~~~F-~~g~---~~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
.++..+|. ++++.| ++|+ ..|||||+++++|+|+ +++++|....| ++.|+||+||+||.
T Consensus 596 rf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~ 662 (878)
T PRK09694 596 RFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRH 662 (878)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCC
Confidence 99999994 567788 6666 4799999999999999 68999999999 78999999999994
No 170
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=1.4e-28 Score=282.67 Aligned_cols=196 Identities=20% Similarity=0.318 Sum_probs=151.9
Q ss_pred hcccCCccccccCcCCccccCCCHHHHHHHHhhCCCceEEeecCCCccCCCCCCCCCCcccChHHhhcCCHHHHHHHH--
Q psy7557 15 KWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLE-- 92 (936)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~f~~~~~~~~~l~~~l~-- 92 (936)
...++.++...+..-.+....+++++...-......- +. .+.. .-.-..+.|.+.+++.+.+.
T Consensus 16 ~lk~~~~~~~~In~~e~~~~~lsd~eL~~kt~~~k~~-l~----~~~~----------ld~~l~eafal~re~~~r~lg~ 80 (970)
T PRK12899 16 ILKRFQKLVEKVNAYDEKFSSLSDDELRNKTAELKQR-YQ----DGES----------LDKLLPEAYGVVKNVCRRLAGT 80 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HH----cCCc----------hHHHHHHHhCCCHHHHHHHhcc
Confidence 4445555666666667888999998776433221100 00 0100 00112355888898888776
Q ss_pred ---hCCCCCC---cHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHH
Q psy7557 93 ---NLSFTTP---SPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQI 166 (936)
Q Consensus 93 ---~~g~~~~---~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~ 166 (936)
..||..| +|+|.+++|.+..++|+++.|+||+|||++|++|++..++. +..++||+||++||.|+
T Consensus 81 ~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~---------g~~v~IVTpTrELA~Qd 151 (970)
T PRK12899 81 PVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT---------GKPVHLVTVNDYLAQRD 151 (970)
T ss_pred ccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh---------cCCeEEEeCCHHHHHHH
Confidence 6899999 99999999999999999999999999999999999987742 22488999999999999
Q ss_pred HHHHHhc-cCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchh-HHHHHcCCcCCC-------CceEEEEccchhhh
Q psy7557 167 EREVNKI-DYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRL-NDFVSRASIDLK-------AVSFVVLDEADRML 236 (936)
Q Consensus 167 ~~~~~~~-~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~~~~~-------~~~~lViDEah~l~ 236 (936)
.+.+..+ ...|+++.+++||.+...+.... ++||+||||++| .|++..+.+.++ .+.++||||||.|+
T Consensus 152 ae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 152 CEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred HHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhh
Confidence 9999996 46789999999999988876554 599999999999 999988766655 45899999999987
No 171
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.96 E-value=2.1e-28 Score=249.77 Aligned_cols=198 Identities=48% Similarity=0.795 Sum_probs=178.7
Q ss_pred hcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcH
Q psy7557 81 FQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTR 160 (936)
Q Consensus 81 ~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~ 160 (936)
+++++.+.+.+.+.|++.|+++|.++++.+++|+|+++++|||+|||++|++|++..+.... ...+++++|++||+
T Consensus 4 ~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~----~~~~~~viii~p~~ 79 (203)
T cd00268 4 LGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP----KKDGPQALILAPTR 79 (203)
T ss_pred CCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc----ccCCceEEEEcCCH
Confidence 57888999999999999999999999999999999999999999999999999998876431 13578999999999
Q ss_pred HHHHHHHHHHHhcc-CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCC
Q psy7557 161 ELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLG 239 (936)
Q Consensus 161 ~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~ 239 (936)
+|+.|+.+.++.+. ..++++..++|+............+++|+|+||+++.+++.+....+++++++|+||||.+.+.+
T Consensus 80 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~ 159 (203)
T cd00268 80 ELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMG 159 (203)
T ss_pred HHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccC
Confidence 99999999999874 45788899999988777766666679999999999999998888889999999999999999999
Q ss_pred CHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEE
Q psy7557 240 FEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKV 282 (936)
Q Consensus 240 ~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i 282 (936)
+...+..+...++..+|++++|||+++.+..++..++.+|+.+
T Consensus 160 ~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 160 FEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred hHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 9999999999998899999999999999999999999998765
No 172
>PRK09694 helicase Cas3; Provisional
Probab=99.96 E-value=3.3e-28 Score=287.87 Aligned_cols=311 Identities=18% Similarity=0.170 Sum_probs=203.4
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhcc--
Q psy7557 97 TTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID-- 174 (936)
Q Consensus 97 ~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~-- 174 (936)
.+|+|+|..+......+.-+++.||||+|||.+++..+...... ....+++|..||+++++|+++++.++.
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~-------~~~~gi~~aLPT~Atan~m~~Rl~~~~~~ 357 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ-------GLADSIIFALPTQATANAMLSRLEALASK 357 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCCeEEEECcHHHHHHHHHHHHHHHHHH
Confidence 38999999886554445678899999999999988765543321 234689999999999999999987631
Q ss_pred -CCCCEEEEEeCCccchHHH---------------------HHhh---c---CCcEEEeCCchhHHHHHc-CCcCCCCc-
Q psy7557 175 -YKGLKAVCVYGGKEIEPQL---------------------EKIR---E---GCHILIATPGRLNDFVSR-ASIDLKAV- 224 (936)
Q Consensus 175 -~~~~~~~~~~gg~~~~~~~---------------------~~~~---~---~~~Iiv~Tp~~l~~~l~~-~~~~~~~~- 224 (936)
.....+...+|........ ..+. + -.+|+|||+..++..+.. +...+..+
T Consensus 358 ~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~ 437 (878)
T PRK09694 358 LFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFG 437 (878)
T ss_pred hcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHh
Confidence 1134566666654322110 0011 1 168999999887643332 22222323
Q ss_pred ---eEEEEccchhhhcCCCHHHHHHHHhhc-CCCCcEEEEEeccchHHHHHH-HHhcCC-C--------EEEEeCCC---
Q psy7557 225 ---SFVVLDEADRMLDLGFEPQINKTSIYI-NPNRQTVMTSATWNKDVQRVA-KKYMVN-P--------VKVNVGSL--- 287 (936)
Q Consensus 225 ---~~lViDEah~l~~~~~~~~~~~i~~~~-~~~~q~~~~SAT~~~~~~~~~-~~~~~~-~--------~~i~~~~~--- 287 (936)
++|||||+|.+ +......+..++..+ .....+++||||+|...++.+ ..|... + ........
T Consensus 438 La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~ 516 (878)
T PRK09694 438 LGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQ 516 (878)
T ss_pred hccCeEEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccce
Confidence 48999999976 333334445554443 345789999999998776543 333211 1 00000000
Q ss_pred C--cccC---CceEEEEEE--e--CchhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcC---CceeeecCC
Q psy7557 288 D--LAAT---HTVTQKIII--L--DEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQY---RKSCSLYGD 355 (936)
Q Consensus 288 ~--~~~~---~~~~~~~~~--~--~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~---~~~~~~h~~ 355 (936)
. .... ......+.+ . ........+++.+......+++++|||||++.|..+++.|+..+ .++..+||.
T Consensus 517 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsr 596 (878)
T PRK09694 517 RFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHAR 596 (878)
T ss_pred eeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCC
Confidence 0 0000 001111111 1 11111122333333222457899999999999999999998765 578999999
Q ss_pred CCHHHHH----HHHHHh-hcCC---cEEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccCCC
Q psy7557 356 LSQEDRE----IALEDI-TSGY---ARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGK 418 (936)
Q Consensus 356 ~~~~~R~----~~~~~f-~~g~---~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~ 418 (936)
+++.+|. ++++.| ++|+ ..|||||+++++|||+ +++++|...+| ++.|+||+||+||.++
T Consensus 597 f~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 597 FTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 9999994 567788 6666 4799999999999999 68999999888 7899999999999976
No 173
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=4.6e-28 Score=275.48 Aligned_cols=293 Identities=20% Similarity=0.226 Sum_probs=198.4
Q ss_pred EEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhccCCCCEEEEEeCCccchH---HH
Q psy7557 117 IGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEP---QL 193 (936)
Q Consensus 117 l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~---~~ 193 (936)
|+.||||||||++|+..+. ... ..+.++||++|+++|+.|+++.+++. .+..+..++|+.+..+ .+
T Consensus 1 LL~g~TGsGKT~v~l~~i~-~~l--------~~g~~vLvlvP~i~L~~Q~~~~l~~~--f~~~v~vlhs~~~~~er~~~~ 69 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIE-KVL--------ALGKSVLVLVPEIALTPQMIQRFKYR--FGSQVAVLHSGLSDSEKLQAW 69 (505)
T ss_pred CccCCCCCCHHHHHHHHHH-HHH--------HcCCeEEEEeCcHHHHHHHHHHHHHH--hCCcEEEEECCCCHHHHHHHH
Confidence 4689999999999976543 332 24678999999999999999999873 2456778888765443 34
Q ss_pred HHhhcC-CcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCC---CHHHHHH--HHhhcCCCCcEEEEEeccchH
Q psy7557 194 EKIREG-CHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLG---FEPQINK--TSIYINPNRQTVMTSATWNKD 267 (936)
Q Consensus 194 ~~~~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~---~~~~~~~--i~~~~~~~~q~~~~SAT~~~~ 267 (936)
..+..+ .+|+|||+..+. ..++++++|||||+|....++ .....+. .......+.+++++|||++.+
T Consensus 70 ~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsle 142 (505)
T TIGR00595 70 RKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLE 142 (505)
T ss_pred HHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHH
Confidence 455554 799999997662 357899999999999876332 1111111 122233578999999997655
Q ss_pred HHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchh----hHHHHHHHHHhccCCCCcEEEEeCchHH---------
Q psy7557 268 VQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDE----KKDWLMEFFDNMDEERDKVMVFMGRKAS--------- 334 (936)
Q Consensus 268 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~----k~~~l~~~l~~~~~~~~~~iVF~~~~~~--------- 334 (936)
....+... ....+........... ....++-..... --..+++.+......++++|||+|++.-
T Consensus 143 s~~~~~~g--~~~~~~l~~r~~~~~~-p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~C 219 (505)
T TIGR00595 143 SYHNAKQK--AYRLLVLTRRVSGRKP-PEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSC 219 (505)
T ss_pred HHHHHhcC--CeEEeechhhhcCCCC-CeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhC
Confidence 44443321 1111111110000011 111111111111 1134555555555667899999887643
Q ss_pred ---------------------------------------------------HHHHHHHhhhc--CCceeeecCCCCHHHH
Q psy7557 335 ---------------------------------------------------VSAMSSDLACQ--YRKSCSLYGDLSQEDR 361 (936)
Q Consensus 335 ---------------------------------------------------~~~l~~~L~~~--~~~~~~~h~~~~~~~R 361 (936)
++.+++.|... +.++..+|+++++..+
T Consensus 220 g~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~ 299 (505)
T TIGR00595 220 GYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKG 299 (505)
T ss_pred cCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCcc
Confidence 46777777766 5678889999987766
Q ss_pred --HHHHHHhhcCCcEEEEEecccccCCCCCCCcEEE--EecCCCC----------ccccccCCCCcccCCCceeEEEEec
Q psy7557 362 --EIALEDITSGYARICVATDVASRGLDVPDLTHVI--NYDFPSH----------IEEYVHRVGRTGRAGKSGESITLMT 427 (936)
Q Consensus 362 --~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI--~~d~p~s----------~~~y~qr~GRagR~g~~g~~~~~~~ 427 (936)
+.+++.|++|+.+|||+|+++++|+|+|+|++|+ ++|..-+ ...|+|++|||||.+..|.+++...
T Consensus 300 ~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~ 379 (505)
T TIGR00595 300 AHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTY 379 (505)
T ss_pred HHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeC
Confidence 8999999999999999999999999999999985 5564322 3568999999999999999986654
Q ss_pred ccC
Q psy7557 428 RKD 430 (936)
Q Consensus 428 ~~~ 430 (936)
..+
T Consensus 380 ~p~ 382 (505)
T TIGR00595 380 NPN 382 (505)
T ss_pred CCC
Confidence 444
No 174
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.96 E-value=3.7e-28 Score=247.96 Aligned_cols=198 Identities=47% Similarity=0.793 Sum_probs=178.2
Q ss_pred hcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCH
Q psy7557 601 FQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTR 680 (936)
Q Consensus 601 ~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~ 680 (936)
+.+++.+.+.|.++|++.|+++|.++++.+++|+|+++++|||+|||++|++|++..+.... ...+++++|++||+
T Consensus 4 ~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~----~~~~~~viii~p~~ 79 (203)
T cd00268 4 LGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP----KKDGPQALILAPTR 79 (203)
T ss_pred CCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc----ccCCceEEEEcCCH
Confidence 56888999999999999999999999999999999999999999999999999998775431 13578999999999
Q ss_pred HHHHHHHHHHHhcc-CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCC
Q psy7557 681 ELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLG 759 (936)
Q Consensus 681 ~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~ 759 (936)
+|+.|+.+.+..+. ..++++..++|+.........+..+++|+|+||+++.+++.+....+++++++|+||||.+.+.+
T Consensus 80 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~ 159 (203)
T cd00268 80 ELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMG 159 (203)
T ss_pred HHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccC
Confidence 99999999998874 35788889999988777766676689999999999999999888888999999999999999888
Q ss_pred CHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEE
Q psy7557 760 FEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKV 802 (936)
Q Consensus 760 ~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i 802 (936)
+...+..+...++.++|++++|||+++.+..++..++.+|+.+
T Consensus 160 ~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 160 FEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred hHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 9999999999998899999999999999999999999888765
No 175
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.96 E-value=3.8e-28 Score=273.23 Aligned_cols=293 Identities=19% Similarity=0.227 Sum_probs=203.3
Q ss_pred CCcHHHHHHHHHHhc----CCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhc
Q psy7557 98 TPSPIQAQAWPILMS----GHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 173 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~~----g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 173 (936)
.|+++|.+|+..+.+ ++..++++|||+|||.+++..+- .+ +..+||||||++|+.|+.+.+.++
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~-~~-----------~~~~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIA-EL-----------KRSTLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHH-Hh-----------cCCEEEEECcHHHHHHHHHHHHHh
Confidence 799999999999987 89999999999999998776432 22 233999999999999999888775
Q ss_pred cCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHHHhhcCC
Q psy7557 174 DYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINP 253 (936)
Q Consensus 174 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~ 253 (936)
...+..+ ..+||...... . ..|.|+|-+.+........+.....++||+||||++....+......+ ..
T Consensus 104 ~~~~~~~-g~~~~~~~~~~-----~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~----~~ 172 (442)
T COG1061 104 LLLNDEI-GIYGGGEKELE-----P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILELL----SA 172 (442)
T ss_pred cCCcccc-ceecCceeccC-----C-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHHHHHhh----hc
Confidence 4333223 33444332211 0 369999988876542112233447999999999998765544443333 22
Q ss_pred CCcEEEEEeccchHHHH---HHHHhcCCCEEEEeCCCCcccCC---ceEEEEEEe-------------------------
Q psy7557 254 NRQTVMTSATWNKDVQR---VAKKYMVNPVKVNVGSLDLAATH---TVTQKIIIL------------------------- 302 (936)
Q Consensus 254 ~~q~~~~SAT~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~------------------------- 302 (936)
...++++|||++..-.. ....++ .|+.......+..... +.....+.+
T Consensus 173 ~~~~LGLTATp~R~D~~~~~~l~~~~-g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~ 251 (442)
T COG1061 173 AYPRLGLTATPEREDGGRIGDLFDLI-GPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARG 251 (442)
T ss_pred ccceeeeccCceeecCCchhHHHHhc-CCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhh
Confidence 22289999997732201 111111 1333333221111000 011111111
Q ss_pred -------------CchhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhh
Q psy7557 303 -------------DEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDIT 369 (936)
Q Consensus 303 -------------~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~ 369 (936)
....+...+...+..+. ...+++|||.+...+..++..+...+. +..+.|..+..+|..+++.|+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr 329 (442)
T COG1061 252 TLRAENEARRIAIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFR 329 (442)
T ss_pred hhhHHHHHHHHhhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHH
Confidence 01112222222333322 467999999999999999999988877 888999999999999999999
Q ss_pred cCCcEEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccC
Q psy7557 370 SGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRA 416 (936)
Q Consensus 370 ~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~ 416 (936)
.|.+++||++.++.+|+|+|+++++|....+.|...|+||+||.-|.
T Consensus 330 ~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 330 TGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred cCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 99999999999999999999999999999999999999999999994
No 176
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=5.4e-28 Score=277.98 Aligned_cols=379 Identities=19% Similarity=0.252 Sum_probs=258.7
Q ss_pred hcccCCccccccCcCCccccCCCHHHHHHHHhhCCCceEEeecCCCccCCCCCCCCCCcccChHHhhcCCHHHHHHH-Hh
Q psy7557 15 KWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQL-EN 93 (936)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~f~~~~~~~~~l~~~l-~~ 93 (936)
...++.++...+..-.++...+++++..........- +. .|. .. ..+ ..++|.+ +.++. ..
T Consensus 15 ~l~~~~~~~~~i~~~~~~~~~lsd~~l~~~t~~~~~r-l~----~~~-------~l-d~~--l~eafA~---vrEa~~R~ 76 (796)
T PRK12906 15 ELKRLEKIADKVNALEDEYEKLSDEQLQAKTPEFRDR-IK----DGE-------SL-DDL--LPEAFAV---AREGAKRV 76 (796)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HH----cCC-------Ch-hhH--HHHHHHH---HHHHHHHH
Confidence 4445555666666667888999998776433221100 00 010 00 000 1111211 22333 23
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHh-
Q psy7557 94 LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK- 172 (936)
Q Consensus 94 ~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~- 172 (936)
+|. .|++.|.-+--++..|+ |+.+.||+|||+++.+|++...+ .|..+-+++||--||.|-++.+..
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al---------~G~~v~vvT~neyLA~Rd~e~~~~~ 144 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNAL---------TGKGVHVVTVNEYLSSRDATEMGEL 144 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHH---------cCCCeEEEeccHHHHHhhHHHHHHH
Confidence 566 89999999888887887 99999999999999999987764 477899999999999999999998
Q ss_pred ccCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhH-HHHHcC------CcCCCCceEEEEccchhhh-cCC-----
Q psy7557 173 IDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLN-DFVSRA------SIDLKAVSFVVLDEADRML-DLG----- 239 (936)
Q Consensus 173 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~-~~l~~~------~~~~~~~~~lViDEah~l~-~~~----- 239 (936)
|...|++++++.|+.+....... -.+||+++|...+- |.|..+ ......+.+.|+||+|.++ |..
T Consensus 145 ~~~LGl~vg~i~~~~~~~~r~~~--y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLi 222 (796)
T PRK12906 145 YRWLGLTVGLNLNSMSPDEKRAA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLI 222 (796)
T ss_pred HHhcCCeEEEeCCCCCHHHHHHH--hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCcee
Confidence 46789999999887655443222 35899999998763 344332 1124568899999999865 111
Q ss_pred ----------CHHHHHHHHhhcCC-------------------CC-----------------------------------
Q psy7557 240 ----------FEPQINKTSIYINP-------------------NR----------------------------------- 255 (936)
Q Consensus 240 ----------~~~~~~~i~~~~~~-------------------~~----------------------------------- 255 (936)
+...+..+...+.+ ..
T Consensus 223 isg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~ 302 (796)
T PRK12906 223 ISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHID 302 (796)
T ss_pred cCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHH
Confidence 11111122111110 00
Q ss_pred --------------------------------------------------------------------------cEEEEE
Q psy7557 256 --------------------------------------------------------------------------QTVMTS 261 (936)
Q Consensus 256 --------------------------------------------------------------------------q~~~~S 261 (936)
.+.+||
T Consensus 303 ~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmT 382 (796)
T PRK12906 303 QALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMT 382 (796)
T ss_pred HHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccC
Confidence 122233
Q ss_pred eccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHH
Q psy7557 262 ATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSD 341 (936)
Q Consensus 262 AT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~ 341 (936)
.|.......+...|..+.+.|..... ....-....++....+|...+.+.+......+.|+||||+|+..++.++..
T Consensus 383 GTa~~e~~Ef~~iY~l~vv~IPtnkp---~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~ 459 (796)
T PRK12906 383 GTAKTEEEEFREIYNMEVITIPTNRP---VIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHL 459 (796)
T ss_pred CCCHHHHHHHHHHhCCCEEEcCCCCC---eeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHH
Confidence 33322222222222222111111000 000011123455667888888888877667789999999999999999999
Q ss_pred hhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCC---CCc-----EEEEecCCCCccccccCCCCc
Q psy7557 342 LACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVP---DLT-----HVINYDFPSHIEEYVHRVGRT 413 (936)
Q Consensus 342 L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip---~v~-----~VI~~d~p~s~~~y~qr~GRa 413 (936)
|...++++..+||++.+.++..+.+.++.|. |+|||++++||+||+ +|. +||+++.|.|...|.|++|||
T Consensus 460 L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRt 537 (796)
T PRK12906 460 LDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRS 537 (796)
T ss_pred HHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhh
Confidence 9999999999999999888888888888887 999999999999994 899 999999999999999999999
Q ss_pred ccCCCceeEEEEecccC
Q psy7557 414 GRAGKSGESITLMTRKD 430 (936)
Q Consensus 414 gR~g~~g~~~~~~~~~~ 430 (936)
||.|.+|.+.+|++.+|
T Consensus 538 GRqG~~G~s~~~~sleD 554 (796)
T PRK12906 538 GRQGDPGSSRFYLSLED 554 (796)
T ss_pred ccCCCCcceEEEEeccc
Confidence 99999999999999876
No 177
>KOG0948|consensus
Probab=99.96 E-value=3e-28 Score=264.97 Aligned_cols=308 Identities=23% Similarity=0.269 Sum_probs=238.5
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHh-ccCC
Q psy7557 98 TPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK-IDYK 176 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~-~~~~ 176 (936)
++-|+|..||.++-++..+++.|-|.+|||.++-.++...+ ....+++|..|-++|.+|-|+++.. |+.
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sL---------r~kQRVIYTSPIKALSNQKYREl~~EF~D- 198 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSL---------REKQRVIYTSPIKALSNQKYRELLEEFKD- 198 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHH---------HhcCeEEeeChhhhhcchhHHHHHHHhcc-
Confidence 67899999999999999999999999999999888776665 3456899999999999999999876 643
Q ss_pred CCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHHHhhcCCCCc
Q psy7557 177 GLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQ 256 (936)
Q Consensus 177 ~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q 256 (936)
|+..+|+...... +..+|.|.+.|..++-++.--+..+.++|+||+|-|-|...+..++.....+|++.+
T Consensus 199 ---VGLMTGDVTInP~-------ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr 268 (1041)
T KOG0948|consen 199 ---VGLMTGDVTINPD-------ASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVR 268 (1041)
T ss_pred ---cceeecceeeCCC-------CceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccce
Confidence 4566777665543 679999999999999999888999999999999999998888888888888999999
Q ss_pred EEEEEeccchHHHHHHHH---hcCCCEEEEeCCCCcccCCceEEE---------EEEeCchh-----hHHHHHHHHHhc-
Q psy7557 257 TVMTSATWNKDVQRVAKK---YMVNPVKVNVGSLDLAATHTVTQK---------IIILDEDE-----KKDWLMEFFDNM- 318 (936)
Q Consensus 257 ~~~~SAT~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~---------~~~~~~~~-----k~~~l~~~l~~~- 318 (936)
.+++|||+|+. .+++.+ .-..|..+....- .+.++.+. +.+++... .+......+...
T Consensus 269 ~VFLSATiPNA-~qFAeWI~~ihkQPcHVVYTdy---RPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~ 344 (1041)
T KOG0948|consen 269 FVFLSATIPNA-RQFAEWICHIHKQPCHVVYTDY---RPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAG 344 (1041)
T ss_pred EEEEeccCCCH-HHHHHHHHHHhcCCceEEeecC---CCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccC
Confidence 99999999954 455554 3456665543322 12223222 22333321 122222222111
Q ss_pred -----------------------------------cCCCCcEEEEeCchHHHHHHHHHhhhc------------------
Q psy7557 319 -----------------------------------DEERDKVMVFMGRKASVSAMSSDLACQ------------------ 345 (936)
Q Consensus 319 -----------------------------------~~~~~~~iVF~~~~~~~~~l~~~L~~~------------------ 345 (936)
.....++|||+-++++|+.+|-.+...
T Consensus 345 ~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nA 424 (1041)
T KOG0948|consen 345 ESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNA 424 (1041)
T ss_pred CCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHH
Confidence 123458999999999999998776532
Q ss_pred ---------------------CCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEE----ecCC
Q psy7557 346 ---------------------YRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVIN----YDFP 400 (936)
Q Consensus 346 ---------------------~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~d~p 400 (936)
..++..||||+-+--++.++-.|.+|-+++|+||.+++.|+|+|+-++|+- ||--
T Consensus 425 i~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~ 504 (1041)
T KOG0948|consen 425 IDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGK 504 (1041)
T ss_pred HHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCc
Confidence 234566999999999999999999999999999999999999999888772 3322
Q ss_pred ----CCccccccCCCCcccCCCc--eeEEEEeccc
Q psy7557 401 ----SHIEEYVHRVGRTGRAGKS--GESITLMTRK 429 (936)
Q Consensus 401 ----~s~~~y~qr~GRagR~g~~--g~~~~~~~~~ 429 (936)
-|.-+|+||.|||||.|.. |.+|+++++.
T Consensus 505 ~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 505 KFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred ceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 1677899999999999876 7777777754
No 178
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.96 E-value=9.1e-28 Score=270.14 Aligned_cols=293 Identities=19% Similarity=0.246 Sum_probs=204.0
Q ss_pred CCcHHHHHHHHhhhc----CCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc
Q psy7557 618 TPSPIQAQAWPILMS----GHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693 (936)
Q Consensus 618 ~p~~iQ~~ai~~~l~----g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 693 (936)
.|+|+|.+|+..+.. ++..++++|||+|||.+++..+- .+ +..+||||||++|+.|+.+.+...
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~-~~-----------~~~~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIA-EL-----------KRSTLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHH-Hh-----------cCCEEEEECcHHHHHHHHHHHHHh
Confidence 799999999999997 89999999999999998775443 22 234999999999999998887775
Q ss_pred cCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHHHhhhcCC
Q psy7557 694 DYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINP 773 (936)
Q Consensus 694 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~~~ 773 (936)
...+. ....+||...... . ..|.|+|-..+...-....+..+.+++||+||||++....+......+..
T Consensus 104 ~~~~~-~~g~~~~~~~~~~-----~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~---- 172 (442)
T COG1061 104 LLLND-EIGIYGGGEKELE-----P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSA---- 172 (442)
T ss_pred cCCcc-ccceecCceeccC-----C-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHHHHHhhhc----
Confidence 43332 2334444333211 1 36999998877653211233344799999999999877655444433322
Q ss_pred CceEEEEEecCChHHH-HHHHH-hcCCCeEEEeCCCCcccCCceEE---EEEEc--------------------------
Q psy7557 774 NRQTVMTSATWNKDVQ-RVAKK-YMVNPVKVNVGSLDLAATHTVTQ---KIIIL-------------------------- 822 (936)
Q Consensus 774 ~~q~v~~SAT~~~~~~-~~~~~-~~~~~~~i~~~~~~~~~~~~~~~---~~~~~-------------------------- 822 (936)
...++++|||++.... ..... .+..|+.+.....+......+.. ..+..
T Consensus 173 ~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 252 (442)
T COG1061 173 AYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT 252 (442)
T ss_pred ccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh
Confidence 2228999999764331 11111 11123444333221111111000 00000
Q ss_pred ------------CcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhc
Q psy7557 823 ------------DEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITS 890 (936)
Q Consensus 823 ------------~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~ 890 (936)
....+...+..++..+. ...+++|||.+..++..++..|...+. +..+.|..+..+|..+++.|+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~ 330 (442)
T COG1061 253 LRAENEARRIAIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRT 330 (442)
T ss_pred hhHHHHHHHHhhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHc
Confidence 01111222223333332 467999999999999999999988777 8899999999999999999999
Q ss_pred CCCcEEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccC
Q psy7557 891 GYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGE 935 (936)
Q Consensus 891 g~~~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR 935 (936)
|.+++||++.++.+|+|+|+++++|....+.|...|+||+||.-|
T Consensus 331 g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 331 GGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred CCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 999999999999999999999999999999999999999999988
No 179
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=2.2e-27 Score=262.25 Aligned_cols=304 Identities=19% Similarity=0.227 Sum_probs=226.6
Q ss_pred HHHHHHhCCCCCCcHHHHHHHHhhhcC------CcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCH
Q psy7557 607 ILRQLENLSFTTPSPIQAQAWPILMSG------HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTR 680 (936)
Q Consensus 607 ~~~~l~~~g~~~p~~iQ~~ai~~~l~g------~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~ 680 (936)
+.+.+..+.| ++|..|.+++.-|..+ .+-++++..|||||++++++++..+ ..|.++..++||-
T Consensus 252 ~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai---------~~G~Q~ALMAPTE 321 (677)
T COG1200 252 LAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAI---------EAGYQAALMAPTE 321 (677)
T ss_pred HHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHH---------HcCCeeEEeccHH
Confidence 4556688999 8999999999999854 4789999999999999999999776 5688999999999
Q ss_pred HHHHHHHHHHHhcc-CCCCEEEEEECCccc---hHHHHHHhcC-ceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchh
Q psy7557 681 ELATQIEREVNKID-YKGLKAVCVYGGKEL---EPQLEKIREG-CHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRM 755 (936)
Q Consensus 681 ~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~---~~~~~~l~~~-~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l 755 (936)
-||.|.++.+.++. ..++++..++|.... ......+.+| .+|+|||- .+.+..+.|+++.++|+||-|+.
T Consensus 322 ILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTH-----ALiQd~V~F~~LgLVIiDEQHRF 396 (677)
T COG1200 322 ILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTH-----ALIQDKVEFHNLGLVIIDEQHRF 396 (677)
T ss_pred HHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcc-----hhhhcceeecceeEEEEeccccc
Confidence 99999999999974 568999999986543 3444556666 89999994 44555778999999999999994
Q ss_pred ccCCCHHHHHHHhhhcCC-CceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHH
Q psy7557 756 LDLGFEPQINKTSIYINP-NRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEF 834 (936)
Q Consensus 756 ~~~~~~~~~~~i~~~~~~-~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 834 (936)
.-.-+..+..-.. .+.++.||||+-+....+ ....+--.-.+...+. -...+... .+.. .+...+++.
T Consensus 397 -----GV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAl--t~fgDldvS~IdElP~-GRkpI~T~--~i~~-~~~~~v~e~ 465 (677)
T COG1200 397 -----GVHQRLALREKGEQNPHVLVMTATPIPRTLAL--TAFGDLDVSIIDELPP-GRKPITTV--VIPH-ERRPEVYER 465 (677)
T ss_pred -----cHHHHHHHHHhCCCCCcEEEEeCCCchHHHHH--HHhccccchhhccCCC-CCCceEEE--Eecc-ccHHHHHHH
Confidence 3333333333334 578999999986654433 3333322222222211 11222222 2222 333334444
Q ss_pred HHhccCCCCcEEEEcCChH--------HHHHHHHHHHhcC--CceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCcc
Q psy7557 835 FDNMDEERDKVMVFMGRKA--------SVSAMSSDLACQY--RKSCSLYGDLSQEDREIALEDITSGYARICVATDVASR 904 (936)
Q Consensus 835 l~~~~~~~~~~iIF~~s~~--------~~~~l~~~L~~~~--~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~ 904 (936)
+.....++.++.+.|+-.+ .|..++..|.... ..++.+||.|+..++.++++.|++|+++|||||.|.+.
T Consensus 466 i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEV 545 (677)
T COG1200 466 IREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEV 545 (677)
T ss_pred HHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEe
Confidence 4443356788888887654 5667778887544 45899999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEccCC-CChhhhHhhhhhccCC
Q psy7557 905 GLDVPDLTHVINYDFP-SHIEEYVHRVGRTGEF 936 (936)
Q Consensus 905 Gidip~v~~VI~~d~p-~s~~~yiqr~GRaGR~ 936 (936)
|||+|+.+++|.+|.- .-..+.-|--||.||+
T Consensus 546 GVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG 578 (677)
T COG1200 546 GVDVPNATVMVIENAERFGLAQLHQLRGRVGRG 578 (677)
T ss_pred cccCCCCeEEEEechhhhhHHHHHHhccccCCC
Confidence 9999999999988764 3477888999999995
No 180
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.1e-27 Score=279.26 Aligned_cols=317 Identities=21% Similarity=0.261 Sum_probs=239.1
Q ss_pred HHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHH
Q psy7557 90 QLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIERE 169 (936)
Q Consensus 90 ~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~ 169 (936)
.....|| +|-++|++|+-++.+|.++++|||||||||.++-.++...+ .++.+++|.+|.++|.+|.++.
T Consensus 112 ~~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al---------~~~qrviYTsPIKALsNQKyrd 181 (1041)
T COG4581 112 PAREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALAL---------RDGQRVIYTSPIKALSNQKYRD 181 (1041)
T ss_pred HHHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHH---------HcCCceEeccchhhhhhhHHHH
Confidence 3456788 89999999999999999999999999999999887766555 3455699999999999999999
Q ss_pred HHh-ccCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHHH
Q psy7557 170 VNK-IDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTS 248 (936)
Q Consensus 170 ~~~-~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~ 248 (936)
+.. |+...-.+..++|+.+.. .++.++|.|.|.|..++.++...+..+.+||+||+|.|.|...+..++.+.
T Consensus 182 l~~~fgdv~~~vGL~TGDv~IN-------~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~I 254 (1041)
T COG4581 182 LLAKFGDVADMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVI 254 (1041)
T ss_pred HHHHhhhhhhhccceecceeeC-------CCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHH
Confidence 876 442222346677776654 337899999999999999998889999999999999999999999999999
Q ss_pred hhcCCCCcEEEEEeccchHHHHHHHHhc---CCCEEEEeCCCCcccCCceEEEEEE-------eCchhh--------H--
Q psy7557 249 IYINPNRQTVMTSATWNKDVQRVAKKYM---VNPVKVNVGSLDLAATHTVTQKIII-------LDEDEK--------K-- 308 (936)
Q Consensus 249 ~~~~~~~q~~~~SAT~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~-------~~~~~k--------~-- 308 (936)
.+++...+++++|||.|+ ..++..++- ..|..+..... .+.++.+.+.. ++...+ .
T Consensus 255 i~lP~~v~~v~LSATv~N-~~EF~~Wi~~~~~~~~~vv~t~~---RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~ 330 (1041)
T COG4581 255 ILLPDHVRFVFLSATVPN-AEEFAEWIQRVHSQPIHVVSTEH---RPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANR 330 (1041)
T ss_pred HhcCCCCcEEEEeCCCCC-HHHHHHHHHhccCCCeEEEeecC---CCCCeEEEEecCCceeeeecccccchhhcchhhhh
Confidence 999999999999999984 445555443 34444433322 12333333221 111111 0
Q ss_pred -------------------------------------HHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhh-------
Q psy7557 309 -------------------------------------DWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLAC------- 344 (936)
Q Consensus 309 -------------------------------------~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~------- 344 (936)
..+...+.. ...-++|+|+-++..|+..+..+..
T Consensus 331 ~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~--~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~ 408 (1041)
T COG4581 331 SLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDK--DNLLPAIVFSFSRRGCEEAAQILSTLDLVLTE 408 (1041)
T ss_pred hhhccchhccccCccccccccccccccCCcccccccchHHHhhhhh--hcCCceEEEEEchhhHHHHHHHhcccccccCC
Confidence 001111111 2345899999999999988776541
Q ss_pred ---------------------c-------------CCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCC
Q psy7557 345 ---------------------Q-------------YRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPD 390 (936)
Q Consensus 345 ---------------------~-------------~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~ 390 (936)
. ...++.||+||-+..|..+.+.|..|-++|++||.+++.|+|+|.
T Consensus 409 ~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPa 488 (1041)
T COG4581 409 EKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPA 488 (1041)
T ss_pred cHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcc
Confidence 1 123456999999999999999999999999999999999999998
Q ss_pred CcEEE----EecC----CCCccccccCCCCcccCCCc--eeEEEEeccc
Q psy7557 391 LTHVI----NYDF----PSHIEEYVHRVGRTGRAGKS--GESITLMTRK 429 (936)
Q Consensus 391 v~~VI----~~d~----p~s~~~y~qr~GRagR~g~~--g~~~~~~~~~ 429 (936)
=++|+ .+|- .-+..+|.|+.|||||.|-+ |.++++-.+.
T Consensus 489 rtvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 489 RTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred cceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCC
Confidence 77777 2331 23688999999999999876 6666664443
No 181
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.96 E-value=2e-27 Score=287.35 Aligned_cols=299 Identities=20% Similarity=0.274 Sum_probs=206.5
Q ss_pred CCCCCCcHHHH---HHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHH
Q psy7557 614 LSFTTPSPIQA---QAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREV 690 (936)
Q Consensus 614 ~g~~~p~~iQ~---~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~ 690 (936)
..|...-|+.. +.+..+.+++.++++|+||||||. .+|.+..... .+...++++.-|.|--|..+..++
T Consensus 60 ~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~------~~~~~~I~~tQPRRlAA~svA~Rv 131 (1283)
T TIGR01967 60 IRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTT--QLPKICLELG------RGSHGLIGHTQPRRLAARTVAQRI 131 (1283)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcC------CCCCceEecCCccHHHHHHHHHHH
Confidence 34554455544 233444455678889999999998 6686644321 122346777889988888877777
Q ss_pred HhccCCCCEEEEEECCc-cchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccc-hhccCCCHHH-HHHH
Q psy7557 691 NKIDYKGLKAVCVYGGK-ELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEAD-RMLDLGFEPQ-INKT 767 (936)
Q Consensus 691 ~~~~~~~~~~~~~~gg~-~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah-~l~~~~~~~~-~~~i 767 (936)
.... +..+....|.. ..+.+ ...+..|.|+|||.|...+.... .++++++||||||| ++++.+|.-. +..+
T Consensus 132 A~el--g~~lG~~VGY~vR~~~~---~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~i 205 (1283)
T TIGR01967 132 AEEL--GTPLGEKVGYKVRFHDQ---VSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQL 205 (1283)
T ss_pred HHHh--CCCcceEEeeEEcCCcc---cCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHH
Confidence 6632 33344444431 22222 23457899999999999887655 48999999999999 6888887654 4444
Q ss_pred hhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCc------chhHHHHHHHHHhc-cC
Q psy7557 768 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDE------DEKKDWLMEFFDNM-DE 840 (936)
Q Consensus 768 ~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~k~~~l~~~l~~~-~~ 840 (936)
.. .+++.|+|+||||++ ...+.+.|...|+ +.+..... .+...+..... ..+...+...+... ..
T Consensus 206 l~-~rpdLKlIlmSATld--~~~fa~~F~~apv-I~V~Gr~~----PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~ 277 (1283)
T TIGR01967 206 LP-RRPDLKIIITSATID--PERFSRHFNNAPI-IEVSGRTY----PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAE 277 (1283)
T ss_pred Hh-hCCCCeEEEEeCCcC--HHHHHHHhcCCCE-EEECCCcc----cceeEEecccccccchhhhHHHHHHHHHHHHHhh
Confidence 33 357889999999996 3567777766664 44433221 22222222211 12223333333322 12
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhcCC---ceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEEc
Q psy7557 841 ERDKVMVFMGRKASVSAMSSDLACQYR---KSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINY 917 (936)
Q Consensus 841 ~~~~~iIF~~s~~~~~~l~~~L~~~~~---~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~ 917 (936)
..+.+|||+++..+++.++..|...+. .+..+||+|++++|..+++.+ +..+|+|||+++++|||+|+|++||++
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDs 355 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDT 355 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeC
Confidence 457899999999999999999987654 477899999999999996654 246999999999999999999999999
Q ss_pred cCC------------------CChhhhHhhhhhccCC
Q psy7557 918 DFP------------------SHIEEYVHRVGRTGEF 936 (936)
Q Consensus 918 d~p------------------~s~~~yiqr~GRaGR~ 936 (936)
+++ .|..+|.||+|||||.
T Consensus 356 Gl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~ 392 (1283)
T TIGR01967 356 GTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV 392 (1283)
T ss_pred CCccccccccccCccccCCccCCHHHHHHHhhhhCCC
Confidence 854 3667999999999994
No 182
>KOG0947|consensus
Probab=99.95 E-value=1.1e-27 Score=267.01 Aligned_cols=300 Identities=18% Similarity=0.199 Sum_probs=227.8
Q ss_pred HHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHH
Q psy7557 610 QLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIERE 689 (936)
Q Consensus 610 ~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~ 689 (936)
-....+| .|-++|.+||-++.+|..+++.|+|.+|||+++..++.... ..+.+++|.+|-++|.+|-++.
T Consensus 290 ~a~~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq---------~h~TR~iYTSPIKALSNQKfRD 359 (1248)
T KOG0947|consen 290 MALIYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ---------KHMTRTIYTSPIKALSNQKFRD 359 (1248)
T ss_pred HHhhCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH---------hhccceEecchhhhhccchHHH
Confidence 3455788 89999999999999999999999999999999887655322 4578999999999999999888
Q ss_pred HHh-ccCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHHHh
Q psy7557 690 VNK-IDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTS 768 (936)
Q Consensus 690 ~~~-~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~ 768 (936)
|+. |+. +..++|.....+. +.++|+|.|.|..++.++.--.+++.+|||||+|-+.+....-.++.+.
T Consensus 360 Fk~tF~D----vgLlTGDvqinPe-------AsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEVi 428 (1248)
T KOG0947|consen 360 FKETFGD----VGLLTGDVQINPE-------ASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVI 428 (1248)
T ss_pred HHHhccc----cceeecceeeCCC-------cceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeee
Confidence 876 322 2378887665443 7899999999999999988778999999999999999888888888999
Q ss_pred hhcCCCceEEEEEecCChHHHHHHHHhcCC---CeEEEeC-CCCcccCCceEEEEEEcC---------------------
Q psy7557 769 IYINPNRQTVMTSATWNKDVQRVAKKYMVN---PVKVNVG-SLDLAATHTVTQKIIILD--------------------- 823 (936)
Q Consensus 769 ~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~---~~~i~~~-~~~~~~~~~~~~~~~~~~--------------------- 823 (936)
.++|.++++|++|||.| +..+++.|..+. .+.+... ..+.+ +.+++....
T Consensus 429 IMlP~HV~~IlLSATVP-N~~EFA~WIGRtK~K~IyViST~kRPVP----LEh~l~t~~~l~kiidq~g~fl~~~~~~a~ 503 (1248)
T KOG0947|consen 429 IMLPRHVNFILLSATVP-NTLEFADWIGRTKQKTIYVISTSKRPVP----LEHYLYTKKSLFKIIDQNGIFLLKGIKDAK 503 (1248)
T ss_pred eeccccceEEEEeccCC-ChHHHHHHhhhccCceEEEEecCCCccc----eEEEEEeccceehhhcccchhhhhcchhhh
Confidence 99999999999999997 566788886532 1111111 00000 011000000
Q ss_pred ------------------------------------------cchhH--HHHHHHHHhcc-CCCCcEEEEcCChHHHHHH
Q psy7557 824 ------------------------------------------EDEKK--DWLMEFFDNMD-EERDKVMVFMGRKASVSAM 858 (936)
Q Consensus 824 ------------------------------------------~~~k~--~~l~~~l~~~~-~~~~~~iIF~~s~~~~~~l 858 (936)
...+. .....++..+. ..--|+||||-+++.|++.
T Consensus 504 ~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~ 583 (1248)
T KOG0947|consen 504 DSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEY 583 (1248)
T ss_pred hhhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHH
Confidence 00011 11233333221 2335899999999999999
Q ss_pred HHHHHh---------------------------------------cCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEec
Q psy7557 859 SSDLAC---------------------------------------QYRKSCSLYGDLSQEDREIALEDITSGYARICVAT 899 (936)
Q Consensus 859 ~~~L~~---------------------------------------~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT 899 (936)
+..|.. ...+++.||||+-+--++.++..|..|-++||+||
T Consensus 584 a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFAT 663 (1248)
T KOG0947|consen 584 ADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFAT 663 (1248)
T ss_pred HHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeeh
Confidence 999873 13467889999999999999999999999999999
Q ss_pred ccCccCCCCCCCCEEEEccCC--------CChhhhHhhhhhccC
Q psy7557 900 DVASRGLDVPDLTHVINYDFP--------SHIEEYVHRVGRTGE 935 (936)
Q Consensus 900 ~~~~~Gidip~v~~VI~~d~p--------~s~~~yiqr~GRaGR 935 (936)
.++++|+|.|+-.+|+.-=.- ..+-+|.||+|||||
T Consensus 664 ETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGR 707 (1248)
T KOG0947|consen 664 ETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGR 707 (1248)
T ss_pred hhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccc
Confidence 999999999987777742111 246889999999999
No 183
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.95 E-value=1.4e-26 Score=275.54 Aligned_cols=332 Identities=15% Similarity=0.165 Sum_probs=213.9
Q ss_pred CCcHHHHHHHHHHhcC--CcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHh-cc
Q psy7557 98 TPSPIQAQAWPILMSG--HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK-ID 174 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~~g--~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~-~~ 174 (936)
.|.|+|..+...++.. ..+|+.-.+|.|||.-+.+.+- .+... +...++||+||. .|..|+..++.+ |
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~-~l~~~------g~~~rvLIVvP~-sL~~QW~~El~~kF- 222 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIH-QQLLT------GRAERVLILVPE-TLQHQWLVEMLRRF- 222 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHH-HHHHc------CCCCcEEEEcCH-HHHHHHHHHHHHHh-
Confidence 5999999998777643 4688999999999998765433 33221 334579999997 899999999865 4
Q ss_pred CCCCEEEEEeCCccchHHH---HHhhcCCcEEEeCCchhHHHHH-cCCcCCCCceEEEEccchhhhcC--CCHHHHHHHH
Q psy7557 175 YKGLKAVCVYGGKEIEPQL---EKIREGCHILIATPGRLNDFVS-RASIDLKAVSFVVLDEADRMLDL--GFEPQINKTS 248 (936)
Q Consensus 175 ~~~~~~~~~~gg~~~~~~~---~~~~~~~~Iiv~Tp~~l~~~l~-~~~~~~~~~~~lViDEah~l~~~--~~~~~~~~i~ 248 (936)
++....+.++.. .... .......+++|+|.+.+...-. ...+.-...+++|+||||++-.. .-...+..+.
T Consensus 223 --~l~~~i~~~~~~-~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~ 299 (956)
T PRK04914 223 --NLRFSLFDEERY-AEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVE 299 (956)
T ss_pred --CCCeEEEcCcch-hhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHH
Confidence 233333322211 1000 0111236799999776643110 01122346899999999998521 1111222222
Q ss_pred hhcCCCCcEEEEEeccchH-HH------------------HH-------------HH-----------------HhcCCC
Q psy7557 249 IYINPNRQTVMTSATWNKD-VQ------------------RV-------------AK-----------------KYMVNP 279 (936)
Q Consensus 249 ~~~~~~~q~~~~SAT~~~~-~~------------------~~-------------~~-----------------~~~~~~ 279 (936)
........++++|||+-.. .. .+ +. .++.+.
T Consensus 300 ~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~ 379 (956)
T PRK04914 300 QLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQ 379 (956)
T ss_pred HHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhccc
Confidence 2223345789999996420 00 00 00 000000
Q ss_pred ----E-----------------------------EEEeCCCCcc---cCCceEEEEE-----------------------
Q psy7557 280 ----V-----------------------------KVNVGSLDLA---ATHTVTQKII----------------------- 300 (936)
Q Consensus 280 ----~-----------------------------~i~~~~~~~~---~~~~~~~~~~----------------------- 300 (936)
. .+.+...... -+....+.+.
T Consensus 380 ~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l 459 (956)
T PRK04914 380 DIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDML 459 (956)
T ss_pred chhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhc
Confidence 0 0000000000 0000001100
Q ss_pred --------------EeCchhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHh-hhcCCceeeecCCCCHHHHHHHH
Q psy7557 301 --------------ILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDL-ACQYRKSCSLYGDLSQEDREIAL 365 (936)
Q Consensus 301 --------------~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L-~~~~~~~~~~h~~~~~~~R~~~~ 365 (936)
......|..+|.+++... ...|+||||+++..+..+++.| ...|+++..+||+|++.+|..++
T Consensus 460 ~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~--~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~ 537 (956)
T PRK04914 460 YPEQIYQEFEDNATWWNFDPRVEWLIDFLKSH--RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAA 537 (956)
T ss_pred CHHHHHHHHhhhhhccccCHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHH
Confidence 011123556677777664 3679999999999999999999 46799999999999999999999
Q ss_pred HHhhcC--CcEEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHhh
Q psy7557 366 EDITSG--YARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEE 443 (936)
Q Consensus 366 ~~f~~g--~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 443 (936)
+.|+++ ..+|||||+++++|+|++.+++|||||+|.++..|.||+||+||.|+.|.+.+++...+......+.+++.+
T Consensus 538 ~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~ 617 (956)
T PRK04914 538 AYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHE 617 (956)
T ss_pred HHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhh
Confidence 999984 699999999999999999999999999999999999999999999999987666655444444445555444
No 184
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=2.3e-26 Score=261.55 Aligned_cols=280 Identities=19% Similarity=0.197 Sum_probs=187.2
Q ss_pred EEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhccCCCCEEEEEECCccchHHH---
Q psy7557 637 IGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQL--- 713 (936)
Q Consensus 637 i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~--- 713 (936)
++.||||||||.+|+..+...+ ..|.++||++|+++|+.|+.+.+++. .+..+..++|+.+.....
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l---------~~g~~vLvlvP~i~L~~Q~~~~l~~~--f~~~v~vlhs~~~~~er~~~~ 69 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVL---------ALGKSVLVLVPEIALTPQMIQRFKYR--FGSQVAVLHSGLSDSEKLQAW 69 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHH---------HcCCeEEEEeCcHHHHHHHHHHHHHH--hCCcEEEEECCCCHHHHHHHH
Confidence 4689999999999976544333 24678999999999999999999874 245678888887654432
Q ss_pred HHHhcC-ceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCC---CHHHHHH--HhhhcCCCceEEEEEecCChH
Q psy7557 714 EKIREG-CHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLG---FEPQINK--TSIYINPNRQTVMTSATWNKD 787 (936)
Q Consensus 714 ~~l~~~-~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~---~~~~~~~--i~~~~~~~~q~v~~SAT~~~~ 787 (936)
..+..+ ++|||||+..+. ..++++++|||||+|....++ .....+. .......+.+++++|||++.+
T Consensus 70 ~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsle 142 (505)
T TIGR00595 70 RKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLE 142 (505)
T ss_pred HHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHH
Confidence 333333 799999998662 358899999999999876332 1111111 122233678999999997654
Q ss_pred HHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcc---hhHHHHHHHHHhccCCCCcEEEEcCChHH----------
Q psy7557 788 VQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDED---EKKDWLMEFFDNMDEERDKVMVFMGRKAS---------- 854 (936)
Q Consensus 788 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~k~~~l~~~l~~~~~~~~~~iIF~~s~~~---------- 854 (936)
....+.. .....+..............+.+...... .-...+.+.+......++++|||+|++..
T Consensus 143 s~~~~~~--g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg 220 (505)
T TIGR00595 143 SYHNAKQ--KAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCG 220 (505)
T ss_pred HHHHHhc--CCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCc
Confidence 4433322 11111111111000001111111111111 11234555555555667899999887653
Q ss_pred --------------------------------------------------HHHHHHHHHhc--CCceEEEeCCCCHHHH-
Q psy7557 855 --------------------------------------------------VSAMSSDLACQ--YRKSCSLYGDLSQEDR- 881 (936)
Q Consensus 855 --------------------------------------------------~~~l~~~L~~~--~~~~~~~h~~l~~~~R- 881 (936)
++.+.+.|... +.++..+|+++++..+
T Consensus 221 ~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~ 300 (505)
T TIGR00595 221 YILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGA 300 (505)
T ss_pred CccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccH
Confidence 46777777776 4578899999987766
Q ss_pred -HHHHHHhhcCCCcEEEecccCccCCCCCCCCEEE--EccCCC----------ChhhhHhhhhhccCC
Q psy7557 882 -EIALEDITSGYARICVATDVASRGLDVPDLTHVI--NYDFPS----------HIEEYVHRVGRTGEF 936 (936)
Q Consensus 882 -~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI--~~d~p~----------s~~~yiqr~GRaGR~ 936 (936)
+.+++.|++|+.+|||+|+++++|+|+|+|++|+ ++|... ....|+|++|||||+
T Consensus 301 ~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~ 368 (505)
T TIGR00595 301 HEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRA 368 (505)
T ss_pred HHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCC
Confidence 8999999999999999999999999999999875 666532 245689999999994
No 185
>KOG0950|consensus
Probab=99.95 E-value=6.6e-27 Score=263.56 Aligned_cols=333 Identities=20% Similarity=0.194 Sum_probs=241.7
Q ss_pred HHHhCCCCCCcHHHHHHH--HHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHH
Q psy7557 90 QLENLSFTTPSPIQAQAW--PILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIE 167 (936)
Q Consensus 90 ~l~~~g~~~~~~~Q~~ai--~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~ 167 (936)
..+..|...++.+|..++ |.++.++|.|..+||+.|||+++-+-++...+.. ...++.+.|-.+.+++-.
T Consensus 215 ~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~--------rr~~llilp~vsiv~Ek~ 286 (1008)
T KOG0950|consen 215 YAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR--------RRNVLLILPYVSIVQEKI 286 (1008)
T ss_pred HHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH--------hhceeEecceeehhHHHH
Confidence 445578889999999998 5688889999999999999999999888777642 456899999988887777
Q ss_pred HHHHhc-cCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHc--CCcCCCCceEEEEccchhhhcCCCHHHH
Q psy7557 168 REVNKI-DYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSR--ASIDLKAVSFVVLDEADRMLDLGFEPQI 244 (936)
Q Consensus 168 ~~~~~~-~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~~~lViDEah~l~~~~~~~~~ 244 (936)
..+..+ ...|+.+.+.+|..+..... +..++.|+|-|+-..++++ ..-.+..+++||+||.|.+.|.+.+..+
T Consensus 287 ~~l~~~~~~~G~~ve~y~g~~~p~~~~----k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~l 362 (1008)
T KOG0950|consen 287 SALSPFSIDLGFPVEEYAGRFPPEKRR----KRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAIL 362 (1008)
T ss_pred hhhhhhccccCCcchhhcccCCCCCcc----cceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHH
Confidence 777775 46788888888765544332 2368999999997665543 1234678999999999999999988888
Q ss_pred HHHHhhc-----CCCCcEEEEEeccchHHHHHHHHhcCCCEEEE-eCCCCcccCCceEEEEEEeCchhhHHHHHH-----
Q psy7557 245 NKTSIYI-----NPNRQTVMTSATWNKDVQRVAKKYMVNPVKVN-VGSLDLAATHTVTQKIIILDEDEKKDWLME----- 313 (936)
Q Consensus 245 ~~i~~~~-----~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~----- 313 (936)
+.++..+ ....|+|+||||+|+ +..+..+ +..-+... ..+..+.....+...++..+ +...+.+
T Consensus 363 E~~l~k~~y~~~~~~~~iIGMSATi~N-~~lL~~~-L~A~~y~t~fRPv~L~E~ik~G~~i~~~~---r~~~lr~ia~l~ 437 (1008)
T KOG0950|consen 363 ELLLAKILYENLETSVQIIGMSATIPN-NSLLQDW-LDAFVYTTRFRPVPLKEYIKPGSLIYESS---RNKVLREIANLY 437 (1008)
T ss_pred HHHHHHHHHhccccceeEeeeecccCC-hHHHHHH-hhhhheecccCcccchhccCCCcccccch---hhHHHHHhhhhh
Confidence 7766543 234679999999984 3333332 22211111 12222111112222222111 1111111
Q ss_pred --------------HHHhccCCCCcEEEEeCchHHHHHHHHHhhh-----------------------------------
Q psy7557 314 --------------FFDNMDEERDKVMVFMGRKASVSAMSSDLAC----------------------------------- 344 (936)
Q Consensus 314 --------------~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~----------------------------------- 344 (936)
+.......+.++||||++++.|+.+|..+..
T Consensus 438 ~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl 517 (1008)
T KOG0950|consen 438 SSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVL 517 (1008)
T ss_pred hhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHH
Confidence 1112223456799999999999988865531
Q ss_pred ---cCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEecC----CCCccccccCCCCcccCC
Q psy7557 345 ---QYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDF----PSHIEEYVHRVGRTGRAG 417 (936)
Q Consensus 345 ---~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~----p~s~~~y~qr~GRagR~g 417 (936)
..+.++++|+|++.++|+.+...|++|.+.|++||+++++|++.|+.+++|-.-. +.+..+|.||+|||||+|
T Consensus 518 ~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~g 597 (1008)
T KOG0950|consen 518 AKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTG 597 (1008)
T ss_pred heeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcc
Confidence 1246778999999999999999999999999999999999999999999984432 347889999999999997
Q ss_pred Cc--eeEEEEecccChhhHHhHHH
Q psy7557 418 KS--GESITLMTRKDWSHAHEIIP 439 (936)
Q Consensus 418 ~~--g~~~~~~~~~~~~~~~~l~~ 439 (936)
.. |.+++++.+.+.+...+++.
T Consensus 598 idT~GdsiLI~k~~e~~~~~~lv~ 621 (1008)
T KOG0950|consen 598 IDTLGDSILIIKSSEKKRVRELVN 621 (1008)
T ss_pred cccCcceEEEeeccchhHHHHHHh
Confidence 55 99999999999887776665
No 186
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=2.8e-26 Score=267.68 Aligned_cols=305 Identities=21% Similarity=0.246 Sum_probs=228.4
Q ss_pred HHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHH
Q psy7557 609 RQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIER 688 (936)
Q Consensus 609 ~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~ 688 (936)
.....++| .|-++|++|+.++.+|.+++++||||||||.++..++...+ ..+.+++|.+|.++|.+|.++
T Consensus 111 ~~~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al---------~~~qrviYTsPIKALsNQKyr 180 (1041)
T COG4581 111 PPAREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALAL---------RDGQRVIYTSPIKALSNQKYR 180 (1041)
T ss_pred cHHHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHH---------HcCCceEeccchhhhhhhHHH
Confidence 34456789 89999999999999999999999999999999888776555 345679999999999999999
Q ss_pred HHHhc-cCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHHH
Q psy7557 689 EVNKI-DYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT 767 (936)
Q Consensus 689 ~~~~~-~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i 767 (936)
.+... +...-.+..++|..+.. .++.++|+|.|.|..++.++...+..+..|||||+|.|.+......++.+
T Consensus 181 dl~~~fgdv~~~vGL~TGDv~IN-------~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~ 253 (1041)
T COG4581 181 DLLAKFGDVADMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEV 253 (1041)
T ss_pred HHHHHhhhhhhhccceecceeeC-------CCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHH
Confidence 88763 32112246667766544 34889999999999999999888999999999999999998888889999
Q ss_pred hhhcCCCceEEEEEecCChHHHHHHHHhc---CCCeEEEeCCCCcccCCceEEEE-------EEcCcchh----------
Q psy7557 768 SIYINPNRQTVMTSATWNKDVQRVAKKYM---VNPVKVNVGSLDLAATHTVTQKI-------IILDEDEK---------- 827 (936)
Q Consensus 768 ~~~~~~~~q~v~~SAT~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~-------~~~~~~~k---------- 827 (936)
..+++.+.|+++||||.| +...+..|+- ..|..+...... +....+++ ..++...+
T Consensus 254 Ii~lP~~v~~v~LSATv~-N~~EF~~Wi~~~~~~~~~vv~t~~R---pvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~ 329 (1041)
T COG4581 254 IILLPDHVRFVFLSATVP-NAEEFAEWIQRVHSQPIHVVSTEHR---PVPLEHFVYVGKGLFDLVDEKKKFNAENFPSAN 329 (1041)
T ss_pred HHhcCCCCcEEEEeCCCC-CHHHHHHHHHhccCCCeEEEeecCC---CCCeEEEEecCCceeeeecccccchhhcchhhh
Confidence 999999999999999997 5566666654 234333322211 01111111 11111110
Q ss_pred -------------------------------------HHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHh------
Q psy7557 828 -------------------------------------KDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLAC------ 864 (936)
Q Consensus 828 -------------------------------------~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~------ 864 (936)
...+...+.. ...-|+|+|+-+++.|+..+..+..
T Consensus 330 ~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~--~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~ 407 (1041)
T COG4581 330 RSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDK--DNLLPAIVFSFSRRGCEEAAQILSTLDLVLT 407 (1041)
T ss_pred hhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhh--hcCCceEEEEEchhhHHHHHHHhcccccccC
Confidence 0001111111 1235899999999999888776651
Q ss_pred -----------------------------------cCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCC
Q psy7557 865 -----------------------------------QYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVP 909 (936)
Q Consensus 865 -----------------------------------~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip 909 (936)
+..++++||+||-+..|..+...|..|-++|++||.+++.|+|+|
T Consensus 408 ~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmP 487 (1041)
T COG4581 408 EEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMP 487 (1041)
T ss_pred CcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCc
Confidence 123456899999999999999999999999999999999999999
Q ss_pred CCCEEEE----cc----CCCChhhhHhhhhhccCC
Q psy7557 910 DLTHVIN----YD----FPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 910 ~v~~VI~----~d----~p~s~~~yiqr~GRaGR~ 936 (936)
.-++|+- +| -..+..+|+|+.|||||-
T Consensus 488 artvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRR 522 (1041)
T COG4581 488 ARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRR 522 (1041)
T ss_pred ccceeeeeeEEecCCceeecChhHHHHhhhhhccc
Confidence 8777662 32 234689999999999993
No 187
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=1.7e-26 Score=265.47 Aligned_cols=382 Identities=18% Similarity=0.219 Sum_probs=258.6
Q ss_pred hhcccCCccccccCcCCccccCCCHHHHHHHHhhCCCceEEeecCCCccCCCCCCCCCCcccChHHhhcCCHHHHHHHHh
Q psy7557 14 DKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLEN 93 (936)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~f~~~~~~~~~l~~~l~~ 93 (936)
....++.++...+....++...+++++..........- +. .+.. .+ ....++|.+-.+.. -..
T Consensus 16 r~l~~~~~~v~~i~~~~~~~~~lsd~eL~~~t~~~k~~-l~----~~~~-----l~-----~~l~eafA~vrEaa--~R~ 78 (908)
T PRK13107 16 RTLKGLGKVVIKINALEADYEKLTDEELKAKTAEFRER-LA----AGET-----LD-----DIMAEAFATVREAS--KRV 78 (908)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HH----cCCc-----hH-----HHHHHHHHHHHHHH--HHH
Confidence 34455566666666777889999998876443222100 00 0100 00 00112222111111 123
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhc
Q psy7557 94 LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 173 (936)
Q Consensus 94 ~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 173 (936)
+|. .|+++|.-+--.+..|+ |+.++||.|||++|.+|++...+ .|..+.|++|+.+||.|..+.+..+
T Consensus 79 lgm-~~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al---------~g~~VhIvT~ndyLA~RD~e~m~~l 146 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNAL---------TGKGVHVITVNDYLARRDAENNRPL 146 (908)
T ss_pred hCC-CcCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHh---------cCCCEEEEeCCHHHHHHHHHHHHHH
Confidence 566 78999987766666666 99999999999999999997764 3455999999999999999999985
Q ss_pred -cCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchh-HHHHHcC-CcCC-----CCceEEEEccchhhhcC-C-----
Q psy7557 174 -DYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRL-NDFVSRA-SIDL-----KAVSFVVLDEADRMLDL-G----- 239 (936)
Q Consensus 174 -~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~-~~~~-----~~~~~lViDEah~l~~~-~----- 239 (936)
...|+++.++.++.+.... .-.-++||+++||+.+ .|+|..+ .... ..+.+.|+||||.++-. .
T Consensus 147 ~~~lGlsv~~i~~~~~~~~r--~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLI 224 (908)
T PRK13107 147 FEFLGLTVGINVAGLGQQEK--KAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLI 224 (908)
T ss_pred HHhcCCeEEEecCCCCHHHH--HhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCcee
Confidence 5789999999998775332 2222589999999999 8888766 3333 77899999999987621 1
Q ss_pred ----------CHHHHHHHHhhcC-------------------CCCcEEEEE-----------------------------
Q psy7557 240 ----------FEPQINKTSIYIN-------------------PNRQTVMTS----------------------------- 261 (936)
Q Consensus 240 ----------~~~~~~~i~~~~~-------------------~~~q~~~~S----------------------------- 261 (936)
....+..+...+. ...+.+-+|
T Consensus 225 ISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~ 304 (908)
T PRK13107 225 ISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANI 304 (908)
T ss_pred ecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhh
Confidence 1111111111110 111122222
Q ss_pred --------------------------------------------------------------------------------
Q psy7557 262 -------------------------------------------------------------------------------- 261 (936)
Q Consensus 262 -------------------------------------------------------------------------------- 261 (936)
T Consensus 305 ~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y 384 (908)
T PRK13107 305 SLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQY 384 (908)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhh
Confidence
Q ss_pred -------eccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCchHH
Q psy7557 262 -------ATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKAS 334 (936)
Q Consensus 262 -------AT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~ 334 (936)
.|.......+...|..+.+.|..... ....-....++....+|...+.+.+......+.|+||||+|+..
T Consensus 385 ~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp---~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~ 461 (908)
T PRK13107 385 EKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRP---MVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQ 461 (908)
T ss_pred hHhhcccCCChHHHHHHHHHhCCCEEECCCCCC---ccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHH
Confidence 11111111111111111111110000 00000111345566788888888888777889999999999999
Q ss_pred HHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCC------------------------
Q psy7557 335 VSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPD------------------------ 390 (936)
Q Consensus 335 ~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~------------------------ 390 (936)
++.++..|...++++..+|+.+++.+|..+.+.|+.|. |+|||++++||+||.=
T Consensus 462 se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~ 539 (908)
T PRK13107 462 SELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKA 539 (908)
T ss_pred HHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999 9999999999999962
Q ss_pred -------------CcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccCh
Q psy7557 391 -------------LTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDW 431 (936)
Q Consensus 391 -------------v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~ 431 (936)
==+||-...+.|..-=-|-.|||||-|.+|.+-.|++-+|.
T Consensus 540 ~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 540 DWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 23688888888888889999999999999999999997763
No 188
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=1.3e-25 Score=259.35 Aligned_cols=306 Identities=19% Similarity=0.253 Sum_probs=216.9
Q ss_pred CCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc
Q psy7557 614 LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693 (936)
Q Consensus 614 ~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 693 (936)
+|. .|+++|...--.+..| -|+.++||+|||++|.+|++...+ .|..|+|++||++||.|.++.+..+
T Consensus 79 lg~-~~ydvQliGg~~Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al---------~G~~V~VvTpn~yLA~qd~e~m~~l 146 (896)
T PRK13104 79 LGL-RHFDVQLIGGMVLHEG--NIAEMRTGEGKTLVATLPAYLNAI---------SGRGVHIVTVNDYLAKRDSQWMKPI 146 (896)
T ss_pred cCC-CcchHHHhhhhhhccC--ccccccCCCCchHHHHHHHHHHHh---------cCCCEEEEcCCHHHHHHHHHHHHHH
Confidence 566 7888887766666555 499999999999999999997663 2456999999999999999999986
Q ss_pred -cCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHH-HHHHHcC-CCCC-----CCceEEEEcccchhc-cC------
Q psy7557 694 -DYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRL-NDFVSRA-SIDL-----KAVSFVVLDEADRML-DL------ 758 (936)
Q Consensus 694 -~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l-~~~l~~~-~~~~-----~~i~~lViDEah~l~-~~------ 758 (936)
...|+++.+++||.+........ .+||++|||++| .++++.+ .+.+ +.+.++|+||||.|+ |.
T Consensus 147 ~~~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLI 224 (896)
T PRK13104 147 YEFLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLI 224 (896)
T ss_pred hcccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCcee
Confidence 46799999999998776654433 589999999999 8888776 3333 589999999999876 21
Q ss_pred --C-------CHHHHHHHhhhcCC--------------CceEEEEEecCChHHHHH------------------------
Q psy7557 759 --G-------FEPQINKTSIYINP--------------NRQTVMTSATWNKDVQRV------------------------ 791 (936)
Q Consensus 759 --~-------~~~~~~~i~~~~~~--------------~~q~v~~SAT~~~~~~~~------------------------ 791 (936)
| ....+..+...+.. +.+.+.+|-.=...++.+
T Consensus 225 ISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~ 304 (896)
T PRK13104 225 ISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHH 304 (896)
T ss_pred eeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHH
Confidence 0 11122222222211 122233332200000000
Q ss_pred ------HHHhc-CCCeEE-------EeCC---------------------------------------------------
Q psy7557 792 ------AKKYM-VNPVKV-------NVGS--------------------------------------------------- 806 (936)
Q Consensus 792 ------~~~~~-~~~~~i-------~~~~--------------------------------------------------- 806 (936)
+..++ .+-..+ .+..
T Consensus 305 i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsG 384 (896)
T PRK13104 305 VNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSG 384 (896)
T ss_pred HHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhcc
Confidence 01111 110000 0000
Q ss_pred --------------------CCcccCCc----eEEEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHH
Q psy7557 807 --------------------LDLAATHT----VTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDL 862 (936)
Q Consensus 807 --------------------~~~~~~~~----~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L 862 (936)
...+.... -....++.....|...+.+.+......+.|+||||+|+..++.++..|
T Consensus 385 MTGTa~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L 464 (896)
T PRK13104 385 MTGTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLL 464 (896)
T ss_pred CCCCChhHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHH
Confidence 00000000 011235566778888888888777788999999999999999999999
Q ss_pred HhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCC--------------------------------
Q psy7557 863 ACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPD-------------------------------- 910 (936)
Q Consensus 863 ~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~-------------------------------- 910 (936)
...+++...+|+.+.+.+|..+.+.|+.| .|+|||++++||+||.=
T Consensus 465 ~~~gi~h~vLnak~~q~Ea~iia~Ag~~G--~VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (896)
T PRK13104 465 KKENIKHQVLNAKFHEKEAQIIAEAGRPG--AVTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHD 542 (896)
T ss_pred HHcCCCeEeecCCCChHHHHHHHhCCCCC--cEEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhh
Confidence 99999999999999999999999999999 49999999999999961
Q ss_pred ------CCEEEEccCCCChhhhHhhhhhccC
Q psy7557 911 ------LTHVINYDFPSHIEEYVHRVGRTGE 935 (936)
Q Consensus 911 ------v~~VI~~d~p~s~~~yiqr~GRaGR 935 (936)
=-+||-...+.|..-=-|-.||+||
T Consensus 543 ~V~~~GGL~VIgTerhesrRID~QLrGRaGR 573 (896)
T PRK13104 543 EVIAAGGLRIIGSERHESRRIDNQLRGRAGR 573 (896)
T ss_pred HHHHcCCCEEEeeccCchHHHHHHhcccccc
Confidence 1268888888888878899999998
No 189
>KOG0948|consensus
Probab=99.94 E-value=1.3e-26 Score=252.30 Aligned_cols=300 Identities=23% Similarity=0.262 Sum_probs=224.9
Q ss_pred CCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHh-
Q psy7557 614 LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK- 692 (936)
Q Consensus 614 ~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~- 692 (936)
.-| .+-|+|..||.++-++.++++.|-|.+|||.++..++...+ ..+.+|+|..|-++|.+|-++.+..
T Consensus 126 YPF-~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sL---------r~kQRVIYTSPIKALSNQKYREl~~E 195 (1041)
T KOG0948|consen 126 YPF-TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSL---------REKQRVIYTSPIKALSNQKYRELLEE 195 (1041)
T ss_pred CCc-ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHH---------HhcCeEEeeChhhhhcchhHHHHHHH
Confidence 345 67899999999999999999999999999999887776555 3467999999999999999998865
Q ss_pred ccCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHHHhhhcC
Q psy7557 693 IDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYIN 772 (936)
Q Consensus 693 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~~ 772 (936)
|+ .++..+|.....+. +..+|+|.|.|..++.++.--++.+.+||+||+|-|-|....-.++.....+|
T Consensus 196 F~----DVGLMTGDVTInP~-------ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP 264 (1041)
T KOG0948|consen 196 FK----DVGLMTGDVTINPD-------ASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLP 264 (1041)
T ss_pred hc----ccceeecceeeCCC-------CceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEecc
Confidence 33 35566777665543 78999999999999999988899999999999999988777777777778889
Q ss_pred CCceEEEEEecCChHHHHHHHHhc---CCCeEEEe-CCCCcccCCceE-----EEEEEcCcc-----hhHHHHHHHHHhc
Q psy7557 773 PNRQTVMTSATWNKDVQRVAKKYM---VNPVKVNV-GSLDLAATHTVT-----QKIIILDED-----EKKDWLMEFFDNM 838 (936)
Q Consensus 773 ~~~q~v~~SAT~~~~~~~~~~~~~---~~~~~i~~-~~~~~~~~~~~~-----~~~~~~~~~-----~k~~~l~~~l~~~ 838 (936)
.+.+.+++|||+| +...++.|.. .-|..+.. .....+..+.+- -.+.++++. +.+......+...
T Consensus 265 ~~vr~VFLSATiP-NA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~ 343 (1041)
T KOG0948|consen 265 DNVRFVFLSATIP-NARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKA 343 (1041)
T ss_pred ccceEEEEeccCC-CHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhcc
Confidence 9999999999997 5667777753 33433322 111111111100 011122221 1111111111110
Q ss_pred ------------------------------------cCCCCcEEEEcCChHHHHHHHHHHHh------------------
Q psy7557 839 ------------------------------------DEERDKVMVFMGRKASVSAMSSDLAC------------------ 864 (936)
Q Consensus 839 ------------------------------------~~~~~~~iIF~~s~~~~~~l~~~L~~------------------ 864 (936)
.....|+|||+-+++.|+.+|-.+..
T Consensus 344 ~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~n 423 (1041)
T KOG0948|consen 344 GESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNN 423 (1041)
T ss_pred CCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHH
Confidence 01235899999999999999888763
Q ss_pred ---------------------cCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEE----ccC
Q psy7557 865 ---------------------QYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVIN----YDF 919 (936)
Q Consensus 865 ---------------------~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~----~d~ 919 (936)
+..+++.|||||-+--++.++-.|..|-+++|+||.+++.|+|.|+-++|+- ||-
T Consensus 424 Ai~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG 503 (1041)
T KOG0948|consen 424 AIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDG 503 (1041)
T ss_pred HHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCC
Confidence 2347788999999999999999999999999999999999999998877763 333
Q ss_pred C----CChhhhHhhhhhccC
Q psy7557 920 P----SHIEEYVHRVGRTGE 935 (936)
Q Consensus 920 p----~s~~~yiqr~GRaGR 935 (936)
- -|--+||||.|||||
T Consensus 504 ~~fRwissGEYIQMSGRAGR 523 (1041)
T KOG0948|consen 504 KKFRWISSGEYIQMSGRAGR 523 (1041)
T ss_pred cceeeecccceEEecccccc
Confidence 2 256789999999999
No 190
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.94 E-value=2.1e-25 Score=265.58 Aligned_cols=306 Identities=15% Similarity=0.159 Sum_probs=197.7
Q ss_pred CCcHHHHHHHHhhhcC--CcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhccC
Q psy7557 618 TPSPIQAQAWPILMSG--HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDY 695 (936)
Q Consensus 618 ~p~~iQ~~ai~~~l~g--~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 695 (936)
.|.|+|..+...++.. ..+|+.-..|.|||.-+.+.+-..+.. +...++||+||. .|..|+..++.+..
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~-------g~~~rvLIVvP~-sL~~QW~~El~~kF- 222 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT-------GRAERVLILVPE-TLQHQWLVEMLRRF- 222 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc-------CCCCcEEEEcCH-HHHHHHHHHHHHHh-
Confidence 7999999998877643 478999999999999876554433321 334579999997 89999999986532
Q ss_pred CCCEEEEEECCccchHHH---HHHhcCceEEEeCchHHHHHHH-cCCCCCCCceEEEEcccchhccC--CCHHHHHHHhh
Q psy7557 696 KGLKAVCVYGGKELEPQL---EKIREGCHILIATPGRLNDFVS-RASIDLKAVSFVVLDEADRMLDL--GFEPQINKTSI 769 (936)
Q Consensus 696 ~~~~~~~~~gg~~~~~~~---~~l~~~~~IiV~Tp~~l~~~l~-~~~~~~~~i~~lViDEah~l~~~--~~~~~~~~i~~ 769 (936)
++....+ ++....... .......+++|+|.+.+...-. ...+.-..+++||+||||++-.. .-...+..+..
T Consensus 223 -~l~~~i~-~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~ 300 (956)
T PRK04914 223 -NLRFSLF-DEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQ 300 (956)
T ss_pred -CCCeEEE-cCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHH
Confidence 2333322 222111000 0011235799999876653110 01122346899999999998521 11122333333
Q ss_pred hcCCCceEEEEEecCChH-HHH------------------HH-------------HHhc-CCCe----------------
Q psy7557 770 YINPNRQTVMTSATWNKD-VQR------------------VA-------------KKYM-VNPV---------------- 800 (936)
Q Consensus 770 ~~~~~~q~v~~SAT~~~~-~~~------------------~~-------------~~~~-~~~~---------------- 800 (936)
.......++++|||+-.. ..+ +. ..++ .++.
T Consensus 301 La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~ 380 (956)
T PRK04914 301 LAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQD 380 (956)
T ss_pred HhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccc
Confidence 223345689999996321 000 00 0000 0000
Q ss_pred ---------------------------------EEEeCCCCccc---CCceEEEEE------------------------
Q psy7557 801 ---------------------------------KVNVGSLDLAA---THTVTQKII------------------------ 820 (936)
Q Consensus 801 ---------------------------------~i~~~~~~~~~---~~~~~~~~~------------------------ 820 (936)
.+......... +....+.+.
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~ 460 (956)
T PRK04914 381 IEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLY 460 (956)
T ss_pred hhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcC
Confidence 00000000000 000000000
Q ss_pred -------------EcCcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHH-HhcCCceEEEeCCCCHHHHHHHHH
Q psy7557 821 -------------ILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDL-ACQYRKSCSLYGDLSQEDREIALE 886 (936)
Q Consensus 821 -------------~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L-~~~~~~~~~~h~~l~~~~R~~~~~ 886 (936)
......|..+|.+++... ...++||||+++..+..++..| ...|+.+..+||+|++.+|..+++
T Consensus 461 pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~--~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~ 538 (956)
T PRK04914 461 PEQIYQEFEDNATWWNFDPRVEWLIDFLKSH--RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAA 538 (956)
T ss_pred HHHHHHHHhhhhhccccCHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHH
Confidence 011123555677777665 3678999999999999999999 467899999999999999999999
Q ss_pred HhhcC--CCcEEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 887 DITSG--YARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 887 ~F~~g--~~~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
.|+++ ..+|||||+++++|+|++.+++|||||+|.++..|.||+||+||.
T Consensus 539 ~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~Ri 590 (956)
T PRK04914 539 YFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRI 590 (956)
T ss_pred HHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccC
Confidence 99984 599999999999999999999999999999999999999999995
No 191
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.93 E-value=6e-25 Score=268.00 Aligned_cols=308 Identities=16% Similarity=0.225 Sum_probs=197.7
Q ss_pred CCcHHHHHHHHHHh----cC-CcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHh
Q psy7557 98 TPSPIQAQAWPILM----SG-HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK 172 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~----~g-~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 172 (936)
.|+++|.+|+..+. .| ++.++++|||||||.+++. ++..+... ....++|||+|+++|+.|+.+.|..
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~-li~~L~~~------~~~~rVLfLvDR~~L~~Qa~~~F~~ 485 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIA-LMYRLLKA------KRFRRILFLVDRSALGEQAEDAFKD 485 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHH-HHHHHHhc------CccCeEEEEecHHHHHHHHHHHHHh
Confidence 58999999998765 33 6799999999999988543 33333321 2346899999999999999999998
Q ss_pred ccCCCC-EEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcC-----CcCCCCceEEEEccchhhhc---------
Q psy7557 173 IDYKGL-KAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRA-----SIDLKAVSFVVLDEADRMLD--------- 237 (936)
Q Consensus 173 ~~~~~~-~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-----~~~~~~~~~lViDEah~l~~--------- 237 (936)
+..... ....+++........ ......|+|+|.+++...+... ...+..+++||+||||+-..
T Consensus 486 ~~~~~~~~~~~i~~i~~L~~~~--~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~ 563 (1123)
T PRK11448 486 TKIEGDQTFASIYDIKGLEDKF--PEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGE 563 (1123)
T ss_pred cccccccchhhhhchhhhhhhc--ccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccch
Confidence 643222 222233221111111 1234789999999987765321 24567899999999999531
Q ss_pred CC------CHHHHHHHHhhcCCCCcEEEEEeccchHHHHHH--------------HHhcCC---CEEEEeCCCCccc---
Q psy7557 238 LG------FEPQINKTSIYINPNRQTVMTSATWNKDVQRVA--------------KKYMVN---PVKVNVGSLDLAA--- 291 (936)
Q Consensus 238 ~~------~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~--------------~~~~~~---~~~i~~~~~~~~~--- 291 (936)
.+ +...++.++.++. ...++||||+......+. ..++.+ |+.+.........
T Consensus 564 ~~~~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~ 641 (1123)
T PRK11448 564 LQFRDQLDYVSKYRRVLDYFD--AVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFE 641 (1123)
T ss_pred hccchhhhHHHHHHHHHhhcC--ccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccccccc
Confidence 11 2356667776653 567999999864332211 111111 2222211000000
Q ss_pred -C------CceEEEE--EEeCch--------h-------hHHHHHH-HHHhc-cCCCCcEEEEeCchHHHHHHHHHhhhc
Q psy7557 292 -T------HTVTQKI--IILDED--------E-------KKDWLME-FFDNM-DEERDKVMVFMGRKASVSAMSSDLACQ 345 (936)
Q Consensus 292 -~------~~~~~~~--~~~~~~--------~-------k~~~l~~-~l~~~-~~~~~~~iVF~~~~~~~~~l~~~L~~~ 345 (936)
. ......+ ...+.. + ....+.+ +.... ....+++||||.++.+|+.+++.|...
T Consensus 642 ~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~ 721 (1123)
T PRK11448 642 KGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEA 721 (1123)
T ss_pred ccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHH
Confidence 0 0000000 000000 0 0011111 11111 123479999999999999998887653
Q ss_pred ------CC---ceeeecCCCCHHHHHHHHHHhhcCCc-EEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCccc
Q psy7557 346 ------YR---KSCSLYGDLSQEDREIALEDITSGYA-RICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGR 415 (936)
Q Consensus 346 ------~~---~~~~~h~~~~~~~R~~~~~~f~~g~~-~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR 415 (936)
+. .+..+||+.+ ++..++++|+++.. +|+|+++++.+|+|+|.|.+||.++++.|...|+||+||+.|
T Consensus 722 f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR 799 (1123)
T PRK11448 722 FKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATR 799 (1123)
T ss_pred HHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhcc
Confidence 11 3456888876 56789999999987 699999999999999999999999999999999999999999
Q ss_pred CCC
Q psy7557 416 AGK 418 (936)
Q Consensus 416 ~g~ 418 (936)
...
T Consensus 800 ~~~ 802 (1123)
T PRK11448 800 LCP 802 (1123)
T ss_pred CCc
Confidence 743
No 192
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.93 E-value=3.2e-23 Score=242.15 Aligned_cols=298 Identities=18% Similarity=0.179 Sum_probs=228.3
Q ss_pred HhCCCCCCcHHHHHHHHhhhcC------CcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHH
Q psy7557 612 ENLSFTTPSPIQAQAWPILMSG------HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQ 685 (936)
Q Consensus 612 ~~~g~~~p~~iQ~~ai~~~l~g------~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q 685 (936)
..++| .-||=|..||..+.+. .|=++|+..|.|||.+++-+++..+ ..|++|.|+|||.-||+|
T Consensus 589 ~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV---------~~GKQVAvLVPTTlLA~Q 658 (1139)
T COG1197 589 ASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAV---------MDGKQVAVLVPTTLLAQQ 658 (1139)
T ss_pred hcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHh---------cCCCeEEEEcccHHhHHH
Confidence 34678 7799999999998843 4999999999999999998888766 458999999999999999
Q ss_pred HHHHHHh-ccCCCCEEEEEECCccchHH---HHHHhcC-ceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCC
Q psy7557 686 IEREVNK-IDYKGLKAVCVYGGKELEPQ---LEKIREG-CHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGF 760 (936)
Q Consensus 686 ~~~~~~~-~~~~~~~~~~~~gg~~~~~~---~~~l~~~-~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~ 760 (936)
.++.|+. |...++++..+..-.+...+ ...+++| .||||||- -+-+..+.|++++++||||-|+..
T Consensus 659 Hy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTH-----rLL~kdv~FkdLGLlIIDEEqRFG---- 729 (1139)
T COG1197 659 HYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTH-----RLLSKDVKFKDLGLLIIDEEQRFG---- 729 (1139)
T ss_pred HHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEech-----HhhCCCcEEecCCeEEEechhhcC----
Confidence 9999976 66677887777554444433 3345555 79999993 334556789999999999999853
Q ss_pred HHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHHHHhccC
Q psy7557 761 EPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDE 840 (936)
Q Consensus 761 ~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~ 840 (936)
-.-..-+..++.++-++-+|||+-|.....+...+++--.+...+.+ ...+..++.-.+. ..+.+.+.+-..
T Consensus 730 -Vk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~---R~pV~T~V~~~d~----~~ireAI~REl~ 801 (1139)
T COG1197 730 -VKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPED---RLPVKTFVSEYDD----LLIREAILRELL 801 (1139)
T ss_pred -ccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCC---CcceEEEEecCCh----HHHHHHHHHHHh
Confidence 22233344456788899999999888888877777776555544432 1223322221111 223333333335
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhcC--CceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEEcc
Q psy7557 841 ERDKVMVFMGRKASVSAMSSDLACQY--RKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYD 918 (936)
Q Consensus 841 ~~~~~iIF~~s~~~~~~l~~~L~~~~--~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d 918 (936)
.++++...+|.++....++..|+.+- ..++..||.|+..+-+.++..|-+|+.+|||||.+.+.|||||+++.+|.-+
T Consensus 802 RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~ 881 (1139)
T COG1197 802 RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIER 881 (1139)
T ss_pred cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEec
Confidence 67889999999999999999998874 3578899999999999999999999999999999999999999999988644
Q ss_pred CC-CChhhhHhhhhhccCC
Q psy7557 919 FP-SHIEEYVHRVGRTGEF 936 (936)
Q Consensus 919 ~p-~s~~~yiqr~GRaGR~ 936 (936)
.- .-..+..|.-||.||.
T Consensus 882 AD~fGLsQLyQLRGRVGRS 900 (1139)
T COG1197 882 ADKFGLAQLYQLRGRVGRS 900 (1139)
T ss_pred cccccHHHHHHhccccCCc
Confidence 32 3478899999999994
No 193
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=1.2e-24 Score=251.51 Aligned_cols=303 Identities=20% Similarity=0.227 Sum_probs=222.2
Q ss_pred CCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc
Q psy7557 614 LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693 (936)
Q Consensus 614 ~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 693 (936)
+|. .|+++|.-.--.+..|+ |+.++||+|||++|.+|++...+ .|..+-|++||..||.|.++.+..+
T Consensus 78 lg~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL---------~G~~V~IvTpn~yLA~rd~e~~~~l 145 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNAL---------TGKGVHVVTVNDYLAKRDAEWMGPL 145 (830)
T ss_pred hCC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHH---------cCCCEEEEecCHHHHHHHHHHHHHH
Confidence 577 89999998887777775 99999999999999999974443 2445779999999999999999987
Q ss_pred -cCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHH-HHHHHcCC------CCCCCceEEEEcccchhc-cCC-----
Q psy7557 694 -DYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRL-NDFVSRAS------IDLKAVSFVVLDEADRML-DLG----- 759 (936)
Q Consensus 694 -~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l-~~~l~~~~------~~~~~i~~lViDEah~l~-~~~----- 759 (936)
...|+++.+++|+.+...+.... .++|+++||+++ .++++.+. ..++.+.++|+||||.|+ |..
T Consensus 146 ~~~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLi 223 (830)
T PRK12904 146 YEFLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLI 223 (830)
T ss_pred HhhcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCcee
Confidence 46799999999998877665554 489999999999 88887653 236789999999999876 210
Q ss_pred ----------CHHHHHHHhhhcCC--------Cc----------------------------------------------
Q psy7557 760 ----------FEPQINKTSIYINP--------NR---------------------------------------------- 775 (936)
Q Consensus 760 ----------~~~~~~~i~~~~~~--------~~---------------------------------------------- 775 (936)
....+..+...+.. ..
T Consensus 224 iSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~ 303 (830)
T PRK12904 224 ISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKR 303 (830)
T ss_pred eECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhc
Confidence 12222222222211 11
Q ss_pred ---------------------------------------------------------------eEEEEEecCChHHHHHH
Q psy7557 776 ---------------------------------------------------------------QTVMTSATWNKDVQRVA 792 (936)
Q Consensus 776 ---------------------------------------------------------------q~v~~SAT~~~~~~~~~ 792 (936)
.+.+||.|.......+.
T Consensus 304 d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~ 383 (830)
T PRK12904 304 DVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFR 383 (830)
T ss_pred CCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHH
Confidence 22233333322222222
Q ss_pred HHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEE
Q psy7557 793 KKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSL 872 (936)
Q Consensus 793 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~ 872 (936)
+.|..+-+. +.... +....-....++.....|...+.+.+......+.|+||||+|+..++.++..|...+++...+
T Consensus 384 ~iY~l~vv~--IPtnk-p~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vL 460 (830)
T PRK12904 384 EIYNLDVVV--IPTNR-PMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVL 460 (830)
T ss_pred HHhCCCEEE--cCCCC-CeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEec
Confidence 222111111 11100 000001112345567788889999887766678899999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCC--------------------------------------CEE
Q psy7557 873 YGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDL--------------------------------------THV 914 (936)
Q Consensus 873 h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v--------------------------------------~~V 914 (936)
||. +.+|+..+..|+.+..+|+|||++++||+||+-= -||
T Consensus 461 nak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhV 538 (830)
T PRK12904 461 NAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHV 538 (830)
T ss_pred cCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEE
Confidence 995 8899999999999999999999999999999742 268
Q ss_pred EEccCCCChhhhHhhhhhccC
Q psy7557 915 INYDFPSHIEEYVHRVGRTGE 935 (936)
Q Consensus 915 I~~d~p~s~~~yiqr~GRaGR 935 (936)
|-...|.|..-=-|-.|||||
T Consensus 539 igTerhesrRid~QlrGRagR 559 (830)
T PRK12904 539 IGTERHESRRIDNQLRGRSGR 559 (830)
T ss_pred EecccCchHHHHHHhhccccc
Confidence 888899999988999999999
No 194
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=1.7e-24 Score=249.21 Aligned_cols=148 Identities=23% Similarity=0.363 Sum_probs=129.1
Q ss_pred HHhhcCCHHHHHHHH-----hCCCCCC---cHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCC
Q psy7557 598 KQAFQHYPEILRQLE-----NLSFTTP---SPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERA 669 (936)
Q Consensus 598 ~~~~~l~~~~~~~l~-----~~g~~~p---~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~ 669 (936)
.+.|.+.+++.+.+. ..||..| +|+|.++++.++.++++++.++||+|||++|++|++..+..
T Consensus 64 ~eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~--------- 134 (970)
T PRK12899 64 PEAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT--------- 134 (970)
T ss_pred HHHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh---------
Confidence 456888899888877 6899999 99999999999999999999999999999999999977642
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhcc-CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHH-HHHHHcCCCCCC-----
Q psy7557 670 GPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRL-NDFVSRASIDLK----- 742 (936)
Q Consensus 670 ~~~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l-~~~l~~~~~~~~----- 742 (936)
+..++||+||++||.|+.+.+..+. ..++++.+++||.+...+...+ ++||+||||+++ .++++.+.+.++
T Consensus 135 g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~v 212 (970)
T PRK12899 135 GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQV 212 (970)
T ss_pred cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhh
Confidence 2248999999999999999999874 5689999999999988876555 599999999999 999988766555
Q ss_pred --CceEEEEcccchhc
Q psy7557 743 --AVSFVVLDEADRML 756 (936)
Q Consensus 743 --~i~~lViDEah~l~ 756 (936)
.+.++||||||.|+
T Consensus 213 qr~~~~~IIDEADsmL 228 (970)
T PRK12899 213 GRGFYFAIIDEVDSIL 228 (970)
T ss_pred cccccEEEEechhhhh
Confidence 55899999999876
No 195
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.93 E-value=4e-24 Score=214.17 Aligned_cols=301 Identities=18% Similarity=0.251 Sum_probs=213.6
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhc
Q psy7557 98 TPSPIQAQAWPILM----SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 173 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~----~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 173 (936)
+++|.|..+-..+. +.++.|+.|-||+|||.. +.+.+...+ ..|.++.+.+|....+.+++.+++.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al--------~~G~~vciASPRvDVclEl~~Rlk~- 166 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQAL--------NQGGRVCIASPRVDVCLELYPRLKQ- 166 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHH--------hcCCeEEEecCcccchHHHHHHHHH-
Confidence 78999998877654 568999999999999995 455665554 4578999999999999999999987
Q ss_pred cCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHHHhhcCC
Q psy7557 174 DYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINP 253 (936)
Q Consensus 174 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~ 253 (936)
...+..+.++||+.+..-. .+++|+|.-.|+++ -+.++++||||+|...-..-.............
T Consensus 167 aF~~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrF-------k~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~ 232 (441)
T COG4098 167 AFSNCDIDLLYGDSDSYFR-------APLVVATTHQLLRF-------KQAFDLLIIDEVDAFPFSDDQSLQYAVKKARKK 232 (441)
T ss_pred hhccCCeeeEecCCchhcc-------ccEEEEehHHHHHH-------HhhccEEEEeccccccccCCHHHHHHHHHhhcc
Confidence 2346778899998764432 68999998777664 346889999999976432212222223334456
Q ss_pred CCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCc-hhhH------HHHHHHHHhccCCCCcEE
Q psy7557 254 NRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDE-DEKK------DWLMEFFDNMDEERDKVM 326 (936)
Q Consensus 254 ~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~k~------~~l~~~l~~~~~~~~~~i 326 (936)
..-++.+|||.++..+.-+...-..++.+....- ..+-.+. .++.... ..+. ..|...++.....+.+++
T Consensus 233 ~g~~IylTATp~k~l~r~~~~g~~~~~klp~RfH--~~pLpvP-kf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~l 309 (441)
T COG4098 233 EGATIYLTATPTKKLERKILKGNLRILKLPARFH--GKPLPVP-KFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVL 309 (441)
T ss_pred cCceEEEecCChHHHHHHhhhCCeeEeecchhhc--CCCCCCC-ceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEE
Confidence 6789999999998776655543333333221111 1112222 2223332 2222 256777777767789999
Q ss_pred EEeCchHHHHHHHHHhhhcC--CceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEE-ecCC-CC
Q psy7557 327 VFMGRKASVSAMSSDLACQY--RKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVIN-YDFP-SH 402 (936)
Q Consensus 327 VF~~~~~~~~~l~~~L~~~~--~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~-~d~p-~s 402 (936)
||+++....+.+++.|+... ..+...|+. ...|.+..+.|++|++.+||+|.+++||+.+|+|++.+. ..-+ -+
T Consensus 310 iF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfT 387 (441)
T COG4098 310 IFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFT 387 (441)
T ss_pred EEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCccccc
Confidence 99999999999999995432 344677875 457889999999999999999999999999999998663 2222 36
Q ss_pred ccccccCCCCcccCCC--ceeEEEEec
Q psy7557 403 IEEYVHRVGRTGRAGK--SGESITLMT 427 (936)
Q Consensus 403 ~~~y~qr~GRagR~g~--~g~~~~~~~ 427 (936)
-+..+|..||+||.-. .|..+.|-.
T Consensus 388 esaLVQIaGRvGRs~~~PtGdv~FFH~ 414 (441)
T COG4098 388 ESALVQIAGRVGRSLERPTGDVLFFHY 414 (441)
T ss_pred HHHHHHHhhhccCCCcCCCCcEEEEec
Confidence 7889999999999833 365554443
No 196
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.93 E-value=2.4e-24 Score=262.75 Aligned_cols=306 Identities=16% Similarity=0.227 Sum_probs=195.1
Q ss_pred CCcHHHHHHHHhhh----cC-CcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHh
Q psy7557 618 TPSPIQAQAWPILM----SG-HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK 692 (936)
Q Consensus 618 ~p~~iQ~~ai~~~l----~g-~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 692 (936)
.++++|.+|+..+. .| +..++++|||||||.+++. ++..+... ...+++|||+|+++|+.|..+.+..
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~-li~~L~~~------~~~~rVLfLvDR~~L~~Qa~~~F~~ 485 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIA-LMYRLLKA------KRFRRILFLVDRSALGEQAEDAFKD 485 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHH-HHHHHHhc------CccCeEEEEecHHHHHHHHHHHHHh
Confidence 58999999998775 23 6899999999999987543 33333221 2356999999999999999999998
Q ss_pred ccCCCC-EEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcC-----CCCCCCceEEEEcccchhcc---------
Q psy7557 693 IDYKGL-KAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRA-----SIDLKAVSFVVLDEADRMLD--------- 757 (936)
Q Consensus 693 ~~~~~~-~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~-----~~~~~~i~~lViDEah~l~~--------- 757 (936)
+..... ....+++....... .......|+|+|..++...+... ...+..+++||+||||+-..
T Consensus 486 ~~~~~~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~ 563 (1123)
T PRK11448 486 TKIEGDQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGE 563 (1123)
T ss_pred cccccccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccch
Confidence 743222 22222221111111 11234789999999987765321 23567899999999999531
Q ss_pred CC------CHHHHHHHhhhcCCCceEEEEEecCChHHHHHH--------------HHhcC---CCeEEEeCCCCc--c--
Q psy7557 758 LG------FEPQINKTSIYINPNRQTVMTSATWNKDVQRVA--------------KKYMV---NPVKVNVGSLDL--A-- 810 (936)
Q Consensus 758 ~~------~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~--------------~~~~~---~~~~i~~~~~~~--~-- 810 (936)
.+ +...++.++... +...|+||||+......+. ..++. .|..+....... .
T Consensus 564 ~~~~~~~~~~~~yr~iL~yF--dA~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~ 641 (1123)
T PRK11448 564 LQFRDQLDYVSKYRRVLDYF--DAVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFE 641 (1123)
T ss_pred hccchhhhHHHHHHHHHhhc--CccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccccccc
Confidence 01 235566666654 3567999999854322211 11111 122222110000 0
Q ss_pred cCCce------EEEE--EEcCc---------------chhHHHHHH-HHHhc-cCCCCcEEEEcCChHHHHHHHHHHHhc
Q psy7557 811 ATHTV------TQKI--IILDE---------------DEKKDWLME-FFDNM-DEERDKVMVFMGRKASVSAMSSDLACQ 865 (936)
Q Consensus 811 ~~~~~------~~~~--~~~~~---------------~~k~~~l~~-~l~~~-~~~~~~~iIF~~s~~~~~~l~~~L~~~ 865 (936)
....+ ...+ ...+. ......++. +.... ....+++||||.++.+|+.++..|...
T Consensus 642 ~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~ 721 (1123)
T PRK11448 642 KGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEA 721 (1123)
T ss_pred ccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHH
Confidence 00000 0000 00000 000111111 11111 123479999999999999999887653
Q ss_pred C------C---ceEEEeCCCCHHHHHHHHHHhhcCCC-cEEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccC
Q psy7557 866 Y------R---KSCSLYGDLSQEDREIALEDITSGYA-RICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGE 935 (936)
Q Consensus 866 ~------~---~~~~~h~~l~~~~R~~~~~~F~~g~~-~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR 935 (936)
. . .+..+||+.+ ++..++++|+++.. +|+|+++++.+|+|+|.|.+||.++.+.|...|+||+||+.|
T Consensus 722 f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR 799 (1123)
T PRK11448 722 FKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATR 799 (1123)
T ss_pred HHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhcc
Confidence 1 1 3456888875 56789999999987 699999999999999999999999999999999999999998
Q ss_pred C
Q psy7557 936 F 936 (936)
Q Consensus 936 ~ 936 (936)
.
T Consensus 800 ~ 800 (1123)
T PRK11448 800 L 800 (1123)
T ss_pred C
Confidence 3
No 197
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.92 E-value=1.3e-23 Score=210.45 Aligned_cols=289 Identities=18% Similarity=0.251 Sum_probs=205.6
Q ss_pred CCcHHHHHHHHhhh----cCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc
Q psy7557 618 TPSPIQAQAWPILM----SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693 (936)
Q Consensus 618 ~p~~iQ~~ai~~~l----~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 693 (936)
+++|.|..+-..+. +..+.|+.|-||+|||.. +.+.++..+ ..|.++.+.+|....+.+++.+++.-
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al--------~~G~~vciASPRvDVclEl~~Rlk~a 167 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQAL--------NQGGRVCIASPRVDVCLELYPRLKQA 167 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHH--------hcCCeEEEecCcccchHHHHHHHHHh
Confidence 68999998876655 568999999999999985 334555544 45889999999999999999999873
Q ss_pred cCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHH-HHhhhcC
Q psy7557 694 DYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQIN-KTSIYIN 772 (936)
Q Consensus 694 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~-~i~~~~~ 772 (936)
+.+..+.++||+.+..-. ..++|+|...+.++ -+.++++||||+|...-.. ...+. .......
T Consensus 168 -F~~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrF-------k~aFD~liIDEVDAFP~~~-d~~L~~Av~~ark 231 (441)
T COG4098 168 -FSNCDIDLLYGDSDSYFR-------APLVVATTHQLLRF-------KQAFDLLIIDEVDAFPFSD-DQSLQYAVKKARK 231 (441)
T ss_pred -hccCCeeeEecCCchhcc-------ccEEEEehHHHHHH-------HhhccEEEEeccccccccC-CHHHHHHHHHhhc
Confidence 567889999998765432 68999998777664 3467899999999753221 12222 2333345
Q ss_pred CCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhH-------HHHHHHHHhccCCCCcE
Q psy7557 773 PNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKK-------DWLMEFFDNMDEERDKV 845 (936)
Q Consensus 773 ~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~-------~~l~~~l~~~~~~~~~~ 845 (936)
+..-++.+|||.++..+.-+...-..+ +.+...-...+-.+ ..+..+....|. ..|...++.....+.|+
T Consensus 232 ~~g~~IylTATp~k~l~r~~~~g~~~~--~klp~RfH~~pLpv-Pkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~ 308 (441)
T COG4098 232 KEGATIYLTATPTKKLERKILKGNLRI--LKLPARFHGKPLPV-PKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPV 308 (441)
T ss_pred ccCceEEEecCChHHHHHHhhhCCeeE--eecchhhcCCCCCC-CceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcE
Confidence 667789999999877665444332222 22211111111111 222333332221 24667777776778899
Q ss_pred EEEcCChHHHHHHHHHHHhcC--CceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEE-ccCC-C
Q psy7557 846 MVFMGRKASVSAMSSDLACQY--RKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVIN-YDFP-S 921 (936)
Q Consensus 846 iIF~~s~~~~~~l~~~L~~~~--~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~-~d~p-~ 921 (936)
+||+++....+.++..|+... ..++++|+. ...|.+..+.||+|++.+||+|.+++||+.+|+|++.|. ..-+ .
T Consensus 309 liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vf 386 (441)
T COG4098 309 LIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVF 386 (441)
T ss_pred EEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccc
Confidence 999999999999999995543 244678876 457899999999999999999999999999999998664 2222 4
Q ss_pred ChhhhHhhhhhccCC
Q psy7557 922 HIEEYVHRVGRTGEF 936 (936)
Q Consensus 922 s~~~yiqr~GRaGR~ 936 (936)
+-+..+|.+||+||-
T Consensus 387 TesaLVQIaGRvGRs 401 (441)
T COG4098 387 TESALVQIAGRVGRS 401 (441)
T ss_pred cHHHHHHHhhhccCC
Confidence 678899999999993
No 198
>KOG0950|consensus
Probab=99.92 E-value=3.9e-25 Score=249.38 Aligned_cols=314 Identities=19% Similarity=0.163 Sum_probs=222.4
Q ss_pred HHHHHHhCCCCCCcHHHHHHH--HhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHH
Q psy7557 607 ILRQLENLSFTTPSPIQAQAW--PILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELAT 684 (936)
Q Consensus 607 ~~~~l~~~g~~~p~~iQ~~ai--~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~ 684 (936)
..-..+..|...++.+|.+++ |.++.++|.|..+||+.|||+++.+-++..++. .+..++.+.|-.+.++
T Consensus 212 ~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~--------~rr~~llilp~vsiv~ 283 (1008)
T KOG0950|consen 212 SHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLC--------RRRNVLLILPYVSIVQ 283 (1008)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHH--------HhhceeEecceeehhH
Confidence 344556678999999999998 678889999999999999999999998877754 3557899999988877
Q ss_pred HHHHHHHhc-cCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcC--CCCCCCceEEEEcccchhccCCCH
Q psy7557 685 QIEREVNKI-DYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRA--SIDLKAVSFVVLDEADRMLDLGFE 761 (936)
Q Consensus 685 Q~~~~~~~~-~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~--~~~~~~i~~lViDEah~l~~~~~~ 761 (936)
.-...+..+ ...|+.+-+.+|....... .+.-++.|||.|+-..++.+- .-.+..+++||+||.|.+.+.+..
T Consensus 284 Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg 359 (1008)
T KOG0950|consen 284 EKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRG 359 (1008)
T ss_pred HHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccc
Confidence 666666665 3668887777766554433 233589999999976655432 224677899999999999998877
Q ss_pred HHHHHHhhhc-----CCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHH------
Q psy7557 762 PQINKTSIYI-----NPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDW------ 830 (936)
Q Consensus 762 ~~~~~i~~~~-----~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~------ 830 (936)
..++.++..+ ....|+|++|||++ ++..+..++-..-..-...+.++.....+...++ ... +...
T Consensus 360 ~~lE~~l~k~~y~~~~~~~~iIGMSATi~-N~~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~--~~~-r~~~lr~ia~ 435 (1008)
T KOG0950|consen 360 AILELLLAKILYENLETSVQIIGMSATIP-NNSLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIY--ESS-RNKVLREIAN 435 (1008)
T ss_pred hHHHHHHHHHHHhccccceeEeeeecccC-ChHHHHHHhhhhheecccCcccchhccCCCcccc--cch-hhHHHHHhhh
Confidence 7777665543 34478999999997 4444444432111111111111111111111111 110 2222
Q ss_pred -------------HHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHh---------------------------------
Q psy7557 831 -------------LMEFFDNMDEERDKVMVFMGRKASVSAMSSDLAC--------------------------------- 864 (936)
Q Consensus 831 -------------l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~--------------------------------- 864 (936)
++.+......++.++||||+++..|+.++..+..
T Consensus 436 l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~ 515 (1008)
T KOG0950|consen 436 LYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDP 515 (1008)
T ss_pred hhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccch
Confidence 2222222234456799999999999988866642
Q ss_pred -----cCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEEccC----CCChhhhHhhhhhccC
Q psy7557 865 -----QYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDF----PSHIEEYVHRVGRTGE 935 (936)
Q Consensus 865 -----~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~----p~s~~~yiqr~GRaGR 935 (936)
.-.++++||+|++.++|+.+...|++|.+.|++||++++.|+|.|+.+++|-.-. +.+..+|.||+|||||
T Consensus 516 Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR 595 (1008)
T KOG0950|consen 516 VLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGR 595 (1008)
T ss_pred HHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhh
Confidence 1246788999999999999999999999999999999999999999999886422 3577899999999999
Q ss_pred C
Q psy7557 936 F 936 (936)
Q Consensus 936 ~ 936 (936)
+
T Consensus 596 ~ 596 (1008)
T KOG0950|consen 596 T 596 (1008)
T ss_pred c
Confidence 5
No 199
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=6e-24 Score=244.79 Aligned_cols=304 Identities=18% Similarity=0.233 Sum_probs=215.7
Q ss_pred CCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc
Q psy7557 614 LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693 (936)
Q Consensus 614 ~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 693 (936)
+|. .|++.|.-+--.+..|+ |+...||+|||+++.+|++.... .|..|-+++||--||.|-++.+..+
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al---------~G~~v~vvT~neyLA~Rd~e~~~~~ 144 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNAL---------TGKGVHVVTVNEYLSSRDATEMGEL 144 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHH---------cCCCeEEEeccHHHHHhhHHHHHHH
Confidence 566 89999998877777776 99999999999999999987663 4778999999999999999999885
Q ss_pred -cCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHH-HHHHcC------CCCCCCceEEEEcccchhc-cCC-----
Q psy7557 694 -DYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLN-DFVSRA------SIDLKAVSFVVLDEADRML-DLG----- 759 (936)
Q Consensus 694 -~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~-~~l~~~------~~~~~~i~~lViDEah~l~-~~~----- 759 (936)
...|+++.++.|+.+....... -.|||+.+|...+- +.++.+ ....+.+.+.|+||+|.++ |..
T Consensus 145 ~~~LGl~vg~i~~~~~~~~r~~~--y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLi 222 (796)
T PRK12906 145 YRWLGLTVGLNLNSMSPDEKRAA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLI 222 (796)
T ss_pred HHhcCCeEEEeCCCCCHHHHHHH--hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCcee
Confidence 5779999999887655544332 35899999998763 333322 1124567899999999765 210
Q ss_pred ----------CHHHHHHHhhhcCC-------------------Cc-----------------------------------
Q psy7557 760 ----------FEPQINKTSIYINP-------------------NR----------------------------------- 775 (936)
Q Consensus 760 ----------~~~~~~~i~~~~~~-------------------~~----------------------------------- 775 (936)
....+..+...+.. ..
T Consensus 223 isg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~ 302 (796)
T PRK12906 223 ISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHID 302 (796)
T ss_pred cCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHH
Confidence 11111111111110 01
Q ss_pred --------------------------------------------------------------------------eEEEEE
Q psy7557 776 --------------------------------------------------------------------------QTVMTS 781 (936)
Q Consensus 776 --------------------------------------------------------------------------q~v~~S 781 (936)
++.+||
T Consensus 303 ~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmT 382 (796)
T PRK12906 303 QALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMT 382 (796)
T ss_pred HHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccC
Confidence 122222
Q ss_pred ecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHH
Q psy7557 782 ATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSD 861 (936)
Q Consensus 782 AT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~ 861 (936)
.|.......+.+.|..+- +.+.... +....-....++.....|...+.+.+......+.|+||||+|+..++.++..
T Consensus 383 GTa~~e~~Ef~~iY~l~v--v~IPtnk-p~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~ 459 (796)
T PRK12906 383 GTAKTEEEEFREIYNMEV--ITIPTNR-PVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHL 459 (796)
T ss_pred CCCHHHHHHHHHHhCCCE--EEcCCCC-CeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHH
Confidence 222211111111111110 0011000 0000001123455667788888888877667889999999999999999999
Q ss_pred HHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCC---CCC-----EEEEccCCCChhhhHhhhhhc
Q psy7557 862 LACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVP---DLT-----HVINYDFPSHIEEYVHRVGRT 933 (936)
Q Consensus 862 L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip---~v~-----~VI~~d~p~s~~~yiqr~GRa 933 (936)
|.+.+++...+||++.+.++..+...++.|. |+|||++++||.||+ +|. |||+++.|.|.+.|.|+.|||
T Consensus 460 L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRt 537 (796)
T PRK12906 460 LDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRS 537 (796)
T ss_pred HHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhh
Confidence 9999999999999999888888888888886 999999999999995 899 999999999999999999999
Q ss_pred cCC
Q psy7557 934 GEF 936 (936)
Q Consensus 934 GR~ 936 (936)
||.
T Consensus 538 GRq 540 (796)
T PRK12906 538 GRQ 540 (796)
T ss_pred ccC
Confidence 995
No 200
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.92 E-value=2.3e-24 Score=213.28 Aligned_cols=164 Identities=32% Similarity=0.501 Sum_probs=140.0
Q ss_pred cHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhcc-CCCC
Q psy7557 100 SPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID-YKGL 178 (936)
Q Consensus 100 ~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~-~~~~ 178 (936)
||+|.++|+.+.+|+|++++||||+|||++|++|++..+.. ....+++|++|+++|+.|+.+.+.++. ..++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~-------~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~ 73 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQE-------GKDARVLIIVPTRALAEQQFERLRKFFSNTNV 73 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHT-------TSSSEEEEEESSHHHHHHHHHHHHHHTTTTTS
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhcc-------CCCceEEEEeeccccccccccccccccccccc
Confidence 79999999999999999999999999999999999987753 223489999999999999999999965 3578
Q ss_pred EEEEEeCCccch-HHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHHHhhcC--CCC
Q psy7557 179 KAVCVYGGKEIE-PQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYIN--PNR 255 (936)
Q Consensus 179 ~~~~~~gg~~~~-~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~--~~~ 255 (936)
++..++|+.... .....+..+++|+|+||+++.+.+..+...+.+++++|+||+|.+.++++...+..+...+. .+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~ 153 (169)
T PF00270_consen 74 RVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNI 153 (169)
T ss_dssp SEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTS
T ss_pred ccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCC
Confidence 899999988755 34444555699999999999999988656778899999999999999888888888888773 368
Q ss_pred cEEEEEeccchHHHH
Q psy7557 256 QTVMTSATWNKDVQR 270 (936)
Q Consensus 256 q~~~~SAT~~~~~~~ 270 (936)
|++++|||+++.+++
T Consensus 154 ~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 154 QIILLSATLPSNVEK 168 (169)
T ss_dssp EEEEEESSSTHHHHH
T ss_pred cEEEEeeCCChhHhh
Confidence 999999999976654
No 201
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.92 E-value=3.7e-24 Score=211.77 Aligned_cols=164 Identities=31% Similarity=0.498 Sum_probs=139.4
Q ss_pred cHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhccC-CCC
Q psy7557 620 SPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDY-KGL 698 (936)
Q Consensus 620 ~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~-~~~ 698 (936)
||+|.++++.+.+|+|+++.||||+|||++|.+|++..+.. ....+++|++|+++|+.|+.+.+..+.. .++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~-------~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~ 73 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQE-------GKDARVLIIVPTRALAEQQFERLRKFFSNTNV 73 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHT-------TSSSEEEEEESSHHHHHHHHHHHHHHTTTTTS
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhcc-------CCCceEEEEeeccccccccccccccccccccc
Confidence 79999999999999999999999999999999999977743 2235999999999999999999998754 478
Q ss_pred EEEEEECCccch-HHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHHHhhhcC--CCc
Q psy7557 699 KAVCVYGGKELE-PQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYIN--PNR 775 (936)
Q Consensus 699 ~~~~~~gg~~~~-~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~~--~~~ 775 (936)
++..++|+.... .....+..+++|+|+||+++.+++..+...+.++++||+||+|.+..+++...+..+...+. .+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~ 153 (169)
T PF00270_consen 74 RVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNI 153 (169)
T ss_dssp SEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTS
T ss_pred ccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCC
Confidence 889999988755 44445556799999999999999998766777899999999999999888888888877763 368
Q ss_pred eEEEEEecCChHHHH
Q psy7557 776 QTVMTSATWNKDVQR 790 (936)
Q Consensus 776 q~v~~SAT~~~~~~~ 790 (936)
|++++|||+++.+++
T Consensus 154 ~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 154 QIILLSATLPSNVEK 168 (169)
T ss_dssp EEEEEESSSTHHHHH
T ss_pred cEEEEeeCCChhHhh
Confidence 999999999866654
No 202
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=2.8e-22 Score=231.08 Aligned_cols=303 Identities=18% Similarity=0.209 Sum_probs=212.3
Q ss_pred CCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc
Q psy7557 614 LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693 (936)
Q Consensus 614 ~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 693 (936)
+|. .|+++|.-.--.+..| -|+.++||.|||++|.+|++...+ .|..|.|++|+..||.|..+.+..+
T Consensus 79 lgm-~~ydVQliGgl~L~~G--~IaEm~TGEGKTL~a~lp~~l~al---------~g~~VhIvT~ndyLA~RD~e~m~~l 146 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVLDSN--RIAEMRTGEGKTLTATLPAYLNAL---------TGKGVHVITVNDYLARRDAENNRPL 146 (908)
T ss_pred hCC-CcCchHHhcchHhcCC--ccccccCCCCchHHHHHHHHHHHh---------cCCCEEEEeCCHHHHHHHHHHHHHH
Confidence 566 7888887655444444 599999999999999999987664 3455999999999999999999886
Q ss_pred -cCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHH-HHHHHcC-CCCC-----CCceEEEEcccchhccCC------
Q psy7557 694 -DYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRL-NDFVSRA-SIDL-----KAVSFVVLDEADRMLDLG------ 759 (936)
Q Consensus 694 -~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l-~~~l~~~-~~~~-----~~i~~lViDEah~l~~~~------ 759 (936)
...|+++.+++++.+.... .-.-++||++|||+.+ .++++.+ .... +.+.++|+||+|.++-..
T Consensus 147 ~~~lGlsv~~i~~~~~~~~r--~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLI 224 (908)
T PRK13107 147 FEFLGLTVGINVAGLGQQEK--KAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLI 224 (908)
T ss_pred HHhcCCeEEEecCCCCHHHH--HhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCcee
Confidence 5789999999998775332 1122689999999999 7888765 3333 778999999999876321
Q ss_pred ----------CHHHHHHHhhhcC-------------------CCceEEEEE-----------------------------
Q psy7557 760 ----------FEPQINKTSIYIN-------------------PNRQTVMTS----------------------------- 781 (936)
Q Consensus 760 ----------~~~~~~~i~~~~~-------------------~~~q~v~~S----------------------------- 781 (936)
....+..+...+. ...+.+-+|
T Consensus 225 ISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~ 304 (908)
T PRK13107 225 ISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANI 304 (908)
T ss_pred ecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhh
Confidence 1111111111110 111222222
Q ss_pred --------------------------------------------------------------------------------
Q psy7557 782 -------------------------------------------------------------------------------- 781 (936)
Q Consensus 782 -------------------------------------------------------------------------------- 781 (936)
T Consensus 305 ~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y 384 (908)
T PRK13107 305 SLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQY 384 (908)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhh
Confidence
Q ss_pred -------ecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHH
Q psy7557 782 -------ATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKAS 854 (936)
Q Consensus 782 -------AT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~ 854 (936)
.|.......+.+-|..+-+. +... .+....-....++....+|...+++-+......+.|+||||+|+..
T Consensus 385 ~kL~GMTGTa~te~~Ef~~iY~l~Vv~--IPTn-kp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~ 461 (908)
T PRK13107 385 EKLAGMTGTADTEAFEFQHIYGLDTVV--VPTN-RPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQ 461 (908)
T ss_pred hHhhcccCCChHHHHHHHHHhCCCEEE--CCCC-CCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHH
Confidence 11111111111111000000 0000 0000000111245566788888888887777888999999999999
Q ss_pred HHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCC------------------------
Q psy7557 855 VSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPD------------------------ 910 (936)
Q Consensus 855 ~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~------------------------ 910 (936)
++.++..|...++....+|+.+.+.+|..+.+.|++|. |+|||++++||.||.=
T Consensus 462 se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~ 539 (908)
T PRK13107 462 SELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKA 539 (908)
T ss_pred HHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHH
Confidence 99999999999999999999999999999999999998 9999999999999961
Q ss_pred -------------CCEEEEccCCCChhhhHhhhhhccC
Q psy7557 911 -------------LTHVINYDFPSHIEEYVHRVGRTGE 935 (936)
Q Consensus 911 -------------v~~VI~~d~p~s~~~yiqr~GRaGR 935 (936)
=-+||-...+.|..-=-|-.|||||
T Consensus 540 ~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGR 577 (908)
T PRK13107 540 DWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGR 577 (908)
T ss_pred HHHhhHHHHHHcCCCEEEecccCchHHHHhhhhccccc
Confidence 1378888888888888899999999
No 203
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.89 E-value=1.1e-21 Score=228.76 Aligned_cols=305 Identities=21% Similarity=0.286 Sum_probs=217.3
Q ss_pred HHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHh-cc-CCCCEEE
Q psy7557 104 AQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK-ID-YKGLKAV 181 (936)
Q Consensus 104 ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~-~~-~~~~~~~ 181 (936)
.+.+.++.+..-++++||||||||. .+|.+..-.. ...+.++.+.-|.|--|..+++.+.. ++ ..|-.|+
T Consensus 56 ~~i~~ai~~~~vvii~getGsGKTT--qlP~~lle~g------~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VG 127 (845)
T COG1643 56 DEILKAIEQNQVVIIVGETGSGKTT--QLPQFLLEEG------LGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVG 127 (845)
T ss_pred HHHHHHHHhCCEEEEeCCCCCChHH--HHHHHHHhhh------cccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceee
Confidence 3344455566778899999999998 4665533211 13456899999999878888887766 43 2344454
Q ss_pred EEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchh-hhcCCCH-HHHHHHHhhcCCCCcEEE
Q psy7557 182 CVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADR-MLDLGFE-PQINKTSIYINPNRQTVM 259 (936)
Q Consensus 182 ~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~-l~~~~~~-~~~~~i~~~~~~~~q~~~ 259 (936)
+-....+. ....+.|-+.|.|.|...+..... ++.++++||||||. -++.++. ..+..+....+++..+|.
T Consensus 128 Y~iRfe~~------~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIi 200 (845)
T COG1643 128 YSIRFESK------VSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLII 200 (845)
T ss_pred EEEEeecc------CCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEE
Confidence 44333221 122378999999999998876654 89999999999994 3443333 234445666677899999
Q ss_pred EEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeC-chh-hHHHHHHHHHh-ccCCCCcEEEEeCchHHHH
Q psy7557 260 TSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD-EDE-KKDWLMEFFDN-MDEERDKVMVFMGRKASVS 336 (936)
Q Consensus 260 ~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~-k~~~l~~~l~~-~~~~~~~~iVF~~~~~~~~ 336 (936)
||||+. .+++...|..-|+ +.+... ..++...+.... .+. -...+...+.. .....+.+|||.+...+.+
T Consensus 201 mSATld--~~rfs~~f~~apv-i~i~GR----~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~ 273 (845)
T COG1643 201 MSATLD--AERFSAYFGNAPV-IEIEGR----TYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIE 273 (845)
T ss_pred EecccC--HHHHHHHcCCCCE-EEecCC----ccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHH
Confidence 999985 4455555544443 443332 233444442222 222 22333333333 2356889999999999999
Q ss_pred HHHHHhhh----cCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEecC-------------
Q psy7557 337 AMSSDLAC----QYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDF------------- 399 (936)
Q Consensus 337 ~l~~~L~~----~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~------------- 399 (936)
.+++.|.. ....++.+||.|+.+++.++++--..|+.+|++||++++.+|-||+|.+||.-+.
T Consensus 274 ~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~ 353 (845)
T COG1643 274 RTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLT 353 (845)
T ss_pred HHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCce
Confidence 99999987 3467889999999999999988888888889999999999999999999996544
Q ss_pred -----CCCccccccCCCCcccCCCceeEEEEecccCh
Q psy7557 400 -----PSHIEEYVHRVGRTGRAGKSGESITLMTRKDW 431 (936)
Q Consensus 400 -----p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~ 431 (936)
|-|-++..||.|||||-+ +|.|+-++++++.
T Consensus 354 ~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~ 389 (845)
T COG1643 354 RLETEPISKASADQRAGRAGRTG-PGICYRLYSEEDF 389 (845)
T ss_pred eeeEEEechhhhhhhccccccCC-CceEEEecCHHHH
Confidence 336778899999999995 8999999998653
No 204
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.89 E-value=2.6e-22 Score=239.48 Aligned_cols=324 Identities=21% Similarity=0.197 Sum_probs=213.7
Q ss_pred CCcHHHHHHHHHHhcC---C-cEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhc
Q psy7557 98 TPSPIQAQAWPILMSG---H-DMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 173 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~~g---~-d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 173 (936)
.+.+.|..++..+.++ . .+++.||||+|||.+++++++...... ....++++++.|++.++.++++.++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-----~~~~~r~i~vlP~~t~ie~~~~r~~~~ 269 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-----IKLKSRVIYVLPFRTIIEDMYRRAKEI 269 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-----ccccceEEEEccHHHHHHHHHHHHHhh
Confidence 3489999999988753 4 788899999999999999888666431 125789999999999999999999985
Q ss_pred cCCCCEEEE-EeCCccchHHHHHh---------------hcCCcEEEeCCchhHHHHHcC-CcC-C--CCceEEEEccch
Q psy7557 174 DYKGLKAVC-VYGGKEIEPQLEKI---------------REGCHILIATPGRLNDFVSRA-SID-L--KAVSFVVLDEAD 233 (936)
Q Consensus 174 ~~~~~~~~~-~~gg~~~~~~~~~~---------------~~~~~Iiv~Tp~~l~~~l~~~-~~~-~--~~~~~lViDEah 233 (936)
...+..... ..|... ....... .....+.++||-.+....... ... + =...++|+||+|
T Consensus 270 ~~~~~~~~~~~h~~~~-~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h 348 (733)
T COG1203 270 FGLFSVIGKSLHSSSK-EPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVH 348 (733)
T ss_pred hccccccccccccccc-chhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHH
Confidence 333222222 222211 1111100 001334445544433311111 111 1 124789999999
Q ss_pred hhhcCCCHHHHHHHHh-hcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCc--ccCCceEEEEEEeCchhhHHH
Q psy7557 234 RMLDLGFEPQINKTSI-YINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDL--AATHTVTQKIIILDEDEKKDW 310 (936)
Q Consensus 234 ~l~~~~~~~~~~~i~~-~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~k~~~ 310 (936)
.+.+......+..++. ....+..+|++|||+|+...........+...+....... .....+.+.....-.......
T Consensus 349 ~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 428 (733)
T COG1203 349 LYADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEE 428 (733)
T ss_pred hhcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHh
Confidence 8877733333333333 3345789999999999999988888776554443321100 001111111100000000011
Q ss_pred HHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHh----hcCCcEEEEEecccccCC
Q psy7557 311 LMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDI----TSGYARICVATDVASRGL 386 (936)
Q Consensus 311 l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f----~~g~~~vLvaT~~~~~Gi 386 (936)
...........+++++|.|||+..|.++++.|+..+.+++.+||.+...+|.+.++.+ +.+...|+|||.+++.|+
T Consensus 429 ~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagv 508 (733)
T COG1203 429 LIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGV 508 (733)
T ss_pred hhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEe
Confidence 2222222335689999999999999999999999888899999999999999888754 457889999999999999
Q ss_pred CCCCCcEEEEecCCCCccccccCCCCcccCC--CceeEEEEecccC
Q psy7557 387 DVPDLTHVINYDFPSHIEEYVHRVGRTGRAG--KSGESITLMTRKD 430 (936)
Q Consensus 387 Dip~v~~VI~~d~p~s~~~y~qr~GRagR~g--~~g~~~~~~~~~~ 430 (936)
|+ +.+++|--=.| +.+.+||+||++|.| ..|..+.+.....
T Consensus 509 Di-dfd~mITe~aP--idSLIQR~GRv~R~g~~~~~~~~v~~~~~~ 551 (733)
T COG1203 509 DI-DFDVLITELAP--IDSLIQRAGRVNRHGKKENGKIYVYNDEER 551 (733)
T ss_pred cc-ccCeeeecCCC--HHHHHHHHHHHhhcccccCCceeEeecccC
Confidence 99 58888866656 899999999999999 5577776665543
No 205
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=4.4e-22 Score=229.95 Aligned_cols=129 Identities=20% Similarity=0.268 Sum_probs=117.8
Q ss_pred EEeCchhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEe
Q psy7557 300 IILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVAT 379 (936)
Q Consensus 300 ~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT 379 (936)
++....+|...+.+.+......+.++||||+|+..++.++..|...++++..+|+ .+.+|+..+..|+.+...|+|||
T Consensus 576 vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIAT 653 (1025)
T PRK12900 576 VYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIAT 653 (1025)
T ss_pred EecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEec
Confidence 4455667888999988776677899999999999999999999999999999997 68899999999999999999999
Q ss_pred cccccCCCCC---CCc-----EEEEecCCCCccccccCCCCcccCCCceeEEEEecccC
Q psy7557 380 DVASRGLDVP---DLT-----HVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430 (936)
Q Consensus 380 ~~~~~GiDip---~v~-----~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~ 430 (936)
++++||+||+ .|. +||+++.|.|...|.||+|||||.|.+|.+++|++..|
T Consensus 654 NMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD 712 (1025)
T PRK12900 654 NMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLED 712 (1025)
T ss_pred cCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhH
Confidence 9999999999 554 45999999999999999999999999999999999876
No 206
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.88 E-value=1.8e-21 Score=232.30 Aligned_cols=311 Identities=21% Similarity=0.178 Sum_probs=204.5
Q ss_pred CCcHHHHHHHHhhhcC---C-cEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc
Q psy7557 618 TPSPIQAQAWPILMSG---H-DMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693 (936)
Q Consensus 618 ~p~~iQ~~ai~~~l~g---~-d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 693 (936)
.+.+.|..++..+.+. . .+++.||||+|||.+++++++...... ....++++++.|++.++.++++.++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-----~~~~~r~i~vlP~~t~ie~~~~r~~~~ 269 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-----IKLKSRVIYVLPFRTIIEDMYRRAKEI 269 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-----ccccceEEEEccHHHHHHHHHHHHHhh
Confidence 4489999999988743 4 788999999999999998887655331 125789999999999999999999986
Q ss_pred cCCCCEEEE-EECCccchHHHHH--------------HhcCceEEEeCchHHHHHHHcC-CCC-C--CCceEEEEcccch
Q psy7557 694 DYKGLKAVC-VYGGKELEPQLEK--------------IREGCHILIATPGRLNDFVSRA-SID-L--KAVSFVVLDEADR 754 (936)
Q Consensus 694 ~~~~~~~~~-~~gg~~~~~~~~~--------------l~~~~~IiV~Tp~~l~~~l~~~-~~~-~--~~i~~lViDEah~ 754 (936)
......... .+|.....-.... -.....+.++||-.+....... ... + =..+.+|+||+|.
T Consensus 270 ~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~ 349 (733)
T COG1203 270 FGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHL 349 (733)
T ss_pred hcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHh
Confidence 433322222 2332221111000 0001345555554443321111 111 1 1236799999998
Q ss_pred hccCCCHHHHH-HHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcc--cCCceEEEEEEcCcchhHHHH
Q psy7557 755 MLDLGFEPQIN-KTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLA--ATHTVTQKIIILDEDEKKDWL 831 (936)
Q Consensus 755 l~~~~~~~~~~-~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~k~~~l 831 (936)
+.+......+. .+......+..+|++|||+|+...........+...+........ ....+.+.....-...-....
T Consensus 350 ~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 429 (733)
T COG1203 350 YADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEEL 429 (733)
T ss_pred hcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhh
Confidence 87763223333 333333468899999999999998888877655444333211000 001111110000000000112
Q ss_pred HHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhh----cCCCcEEEecccCccCCC
Q psy7557 832 MEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDIT----SGYARICVATDVASRGLD 907 (936)
Q Consensus 832 ~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~----~g~~~vLVaT~~~~~Gid 907 (936)
...........++++|.|||+..|.+++..|+..+..++.+||.+...+|.+.++.++ .+...|+|||.+.+.|+|
T Consensus 430 ~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvD 509 (733)
T COG1203 430 IELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVD 509 (733)
T ss_pred hhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEec
Confidence 2222233356789999999999999999999998878999999999999998888654 578899999999999999
Q ss_pred CCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 908 VPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 908 ip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
+ +.+++|-==.| +++.+||+||.+|-
T Consensus 510 i-dfd~mITe~aP--idSLIQR~GRv~R~ 535 (733)
T COG1203 510 I-DFDVLITELAP--IDSLIQRAGRVNRH 535 (733)
T ss_pred c-ccCeeeecCCC--HHHHHHHHHHHhhc
Confidence 9 68888866566 89999999999983
No 207
>KOG0922|consensus
Probab=99.87 E-value=9.1e-21 Score=207.68 Aligned_cols=305 Identities=20% Similarity=0.288 Sum_probs=208.2
Q ss_pred HHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHh-c-cCCCCEEE
Q psy7557 104 AQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK-I-DYKGLKAV 181 (936)
Q Consensus 104 ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~-~-~~~~~~~~ 181 (936)
.+.+..+.+++-++++|+||||||. .+|-+..-... ....++.+.-|.|--|..+++++.. . +..|-.|+
T Consensus 57 ~~il~~ve~nqvlIviGeTGsGKST--QipQyL~eaG~------~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VG 128 (674)
T KOG0922|consen 57 DQILYAVEDNQVLIVIGETGSGKST--QIPQYLAEAGF------ASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVG 128 (674)
T ss_pred HHHHHHHHHCCEEEEEcCCCCCccc--cHhHHHHhccc------ccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceee
Confidence 3455556677788999999999998 56755332111 2233489999999988888887765 3 23444444
Q ss_pred EEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchh-hhcCC-CHHHHHHHHhhcCCCCcEEE
Q psy7557 182 CVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADR-MLDLG-FEPQINKTSIYINPNRQTVM 259 (936)
Q Consensus 182 ~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~-l~~~~-~~~~~~~i~~~~~~~~q~~~ 259 (936)
....=.+.. ...+.|.+.|.|.|++.+.... .+++.++||+||||. -+..+ ....++++. ..+++..+++
T Consensus 129 Y~IRFed~t------s~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl~TDiLlGlLKki~-~~R~~LklIi 200 (674)
T KOG0922|consen 129 YTIRFEDST------SKDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSLHTDILLGLLKKIL-KKRPDLKLII 200 (674)
T ss_pred eEEEecccC------CCceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhhHHHHHHHHHHHHH-hcCCCceEEE
Confidence 432211111 1126899999999988776554 488999999999994 11111 112222222 2345678999
Q ss_pred EEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHH-HHHHHHh-ccCCCCcEEEEeCchHHHHH
Q psy7557 260 TSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDW-LMEFFDN-MDEERDKVMVFMGRKASVSA 337 (936)
Q Consensus 260 ~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~-l~~~l~~-~~~~~~~~iVF~~~~~~~~~ 337 (936)
+|||+. ...+...|..-|+.. +... ..++...+..-+..+=.+. +...++- ..++.+-+|||...+++.+.
T Consensus 201 mSATld--a~kfS~yF~~a~i~~-i~GR----~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~ 273 (674)
T KOG0922|consen 201 MSATLD--AEKFSEYFNNAPILT-IPGR----TFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEA 273 (674)
T ss_pred Eeeeec--HHHHHHHhcCCceEe-ecCC----CCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHH
Confidence 999985 444555555445433 3221 2344444433222222221 1112221 12567799999999999999
Q ss_pred HHHHhhhcCC--------ceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEecC----------
Q psy7557 338 MSSDLACQYR--------KSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDF---------- 399 (936)
Q Consensus 338 l~~~L~~~~~--------~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~---------- 399 (936)
+++.|.+... -+..+||.|+.+++.++++.-..|..+|++||++++..+-||+|.+||.-++
T Consensus 274 ~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~ 353 (674)
T KOG0922|consen 274 ACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRT 353 (674)
T ss_pred HHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeecccc
Confidence 9998876521 2357999999999999999999999999999999999999999999995443
Q ss_pred --------CCCccccccCCCCcccCCCceeEEEEecccChh
Q psy7557 400 --------PSHIEEYVHRVGRTGRAGKSGESITLMTRKDWS 432 (936)
Q Consensus 400 --------p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~ 432 (936)
|-|-.+-.||.|||||.| +|.|+-++++++..
T Consensus 354 g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~ 393 (674)
T KOG0922|consen 354 GLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYD 393 (674)
T ss_pred CccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHh
Confidence 347778899999999996 89999999988753
No 208
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.87 E-value=3e-20 Score=211.01 Aligned_cols=286 Identities=24% Similarity=0.314 Sum_probs=197.0
Q ss_pred HHHHHHhC-CCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHH
Q psy7557 87 ILRQLENL-SFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQ 165 (936)
Q Consensus 87 l~~~l~~~-g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q 165 (936)
..+.+++. || .|...|.-....+..|++.-++||||.|||.--++..+... ..|.+++||+||+.|+.|
T Consensus 71 ~~~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a---------~kgkr~yii~PT~~Lv~Q 140 (1187)
T COG1110 71 FEEFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLA---------KKGKRVYIIVPTTTLVRQ 140 (1187)
T ss_pred HHHHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHH---------hcCCeEEEEecCHHHHHH
Confidence 44455554 55 99999999999999999999999999999975444333221 456899999999999999
Q ss_pred HHHHHHhccC-C-CCEEEEEeCCc-c---chHHHHHhhcC-CcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcC
Q psy7557 166 IEREVNKIDY-K-GLKAVCVYGGK-E---IEPQLEKIREG-CHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDL 238 (936)
Q Consensus 166 ~~~~~~~~~~-~-~~~~~~~~gg~-~---~~~~~~~~~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~ 238 (936)
+++.+++|.. . +..+..+|.+. + ......++.+| .||+|+|.+-|...... +.--+++++++|.+|.++..
T Consensus 141 ~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~Lka 218 (1187)
T COG1110 141 VYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILKA 218 (1187)
T ss_pred HHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHhc
Confidence 9999999842 1 34444445554 2 23334556655 89999997666544332 11136899999999987643
Q ss_pred C-----------CHHH-H------H----------------HHHhh--------cCCCCcEEEEEeccchHH--HHHHHH
Q psy7557 239 G-----------FEPQ-I------N----------------KTSIY--------INPNRQTVMTSATWNKDV--QRVAKK 274 (936)
Q Consensus 239 ~-----------~~~~-~------~----------------~i~~~--------~~~~~q~~~~SAT~~~~~--~~~~~~ 274 (936)
+ |... + . ++... -.+..+++..|||..+.- ..+.+.
T Consensus 219 skNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfRe 298 (1187)
T COG1110 219 SKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRE 298 (1187)
T ss_pred cccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHH
Confidence 2 2221 0 0 11000 113458999999986543 223344
Q ss_pred hcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCc---hHHHHHHHHHhhhcCCceee
Q psy7557 275 YMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGR---KASVSAMSSDLACQYRKSCS 351 (936)
Q Consensus 275 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~---~~~~~~l~~~L~~~~~~~~~ 351 (936)
++. ..++.... ...++...+... .....+.++++.+ +.-.|||++. +..+++++++|+..|+++..
T Consensus 299 Llg----FevG~~~~-~LRNIvD~y~~~---~~~e~~~elvk~l---G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~ 367 (1187)
T COG1110 299 LLG----FEVGSGGE-GLRNIVDIYVES---ESLEKVVELVKKL---GDGGLIFVPIDYGREKAEELAEYLRSHGINAEL 367 (1187)
T ss_pred HhC----CccCccch-hhhheeeeeccC---ccHHHHHHHHHHh---CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEE
Confidence 332 12222211 122233333222 4455566677776 5578999999 88999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHhhcCCcEEEEEe----cccccCCCCCC-CcEEEEecCC
Q psy7557 352 LYGDLSQEDREIALEDITSGYARICVAT----DVASRGLDVPD-LTHVINYDFP 400 (936)
Q Consensus 352 ~h~~~~~~~R~~~~~~f~~g~~~vLvaT----~~~~~GiDip~-v~~VI~~d~p 400 (936)
+|+. .+..++.|..|++++||.. .++.||+|+|. ++++|.|+.|
T Consensus 368 ~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 368 IHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred eecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 9984 3778999999999999976 48999999997 7889998887
No 209
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.86 E-value=3.7e-20 Score=215.73 Aligned_cols=134 Identities=20% Similarity=0.241 Sum_probs=119.9
Q ss_pred hhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEeccccc
Q psy7557 305 DEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASR 384 (936)
Q Consensus 305 ~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~ 384 (936)
..+.+.+.+.+......+.+++|||+++..++.+++.|...++++..+||++++.+|..+++.|+.|++.|||||+++++
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~r 504 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLRE 504 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcC
Confidence 44566677777766567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEec-----CCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHHH
Q psy7557 385 GLDVPDLTHVINYD-----FPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIP 439 (936)
Q Consensus 385 GiDip~v~~VI~~d-----~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~ 439 (936)
|+|+|++++||++| .|.+..+|+||+|||||. ..|.+++|++..+......+.+
T Consensus 505 GfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 505 GLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred CeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHH
Confidence 99999999999998 799999999999999998 6899999999776654444444
No 210
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=2.4e-19 Score=202.01 Aligned_cols=376 Identities=18% Similarity=0.166 Sum_probs=249.0
Q ss_pred hcccCCccccccCcCCccccCCCHHHHHHHHhhCCCceEEeecCCCccCCCCCCCCCCcccChHHhhcCCHHHHHHH-Hh
Q psy7557 15 KWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQL-EN 93 (936)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~f~~~~~~~~~l~~~l-~~ 93 (936)
...++.++...+..-.+....+++++..........- . .+.+ ....++|. -+.++. ..
T Consensus 16 ~l~~~~~~~~~i~~~e~~~~~lsd~eL~~~t~~~~~~-l--~~~d---------------~~l~eafA---vvREa~~R~ 74 (764)
T PRK12326 16 NQSRSLALVTAAAEYEEEAADLSDEELRKAAGELNLD-D--LGDS---------------DDLAEFLA---IAREAAERT 74 (764)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-h--hhhh---------------hHHHHHHH---HHHHHHHHH
Confidence 3444455556666667888999998876543322100 0 0000 00111111 122222 23
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHh-
Q psy7557 94 LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK- 172 (936)
Q Consensus 94 ~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~- 172 (936)
+|. .|++.|.-+.-.++.|+ ++.+.||+|||+++.+|++...+ .|..+-|++|+-.||.|-++.+..
T Consensus 75 lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL---------~G~~VhvvT~NdyLA~RDae~m~~l 142 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYAL---------QGRRVHVITVNDYLARRDAEWMGPL 142 (764)
T ss_pred cCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHH---------cCCCeEEEcCCHHHHHHHHHHHHHH
Confidence 566 89999999999999886 88999999999999999987763 467899999999999999999998
Q ss_pred ccCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchh-HHHHHcC------CcCCCCceEEEEccchhhh-cC------
Q psy7557 173 IDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRL-NDFVSRA------SIDLKAVSFVVLDEADRML-DL------ 238 (936)
Q Consensus 173 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~------~~~~~~~~~lViDEah~l~-~~------ 238 (936)
|...|+++.++.++.+....... -.|||+++|..-+ .|.|..+ ......+.+.|+||+|.++ |.
T Consensus 143 y~~LGLsvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLi 220 (764)
T PRK12326 143 YEALGLTVGWITEESTPEERRAA--YACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLV 220 (764)
T ss_pred HHhcCCEEEEECCCCCHHHHHHH--HcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCcee
Confidence 46789999999887664433222 2489999999875 2333322 2224568899999999875 10
Q ss_pred --------CCHHHHHHHHhhcCCC--------C-----------------------------------------------
Q psy7557 239 --------GFEPQINKTSIYINPN--------R----------------------------------------------- 255 (936)
Q Consensus 239 --------~~~~~~~~i~~~~~~~--------~----------------------------------------------- 255 (936)
.....+..+...+.++ .
T Consensus 221 ISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~ 300 (764)
T PRK12326 221 LAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQR 300 (764)
T ss_pred eeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhc
Confidence 0111122222222110 1
Q ss_pred ---------------------------------------------------------------cEEEEEeccchHHHHHH
Q psy7557 256 ---------------------------------------------------------------QTVMTSATWNKDVQRVA 272 (936)
Q Consensus 256 ---------------------------------------------------------------q~~~~SAT~~~~~~~~~ 272 (936)
.+.+||.|.......+.
T Consensus 301 d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~ 380 (764)
T PRK12326 301 DVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLR 380 (764)
T ss_pred CCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHH
Confidence 23344444443333333
Q ss_pred HHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeee
Q psy7557 273 KKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSL 352 (936)
Q Consensus 273 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~ 352 (936)
+.|-.+.+.|..... ....-....++....+|...+.+.+......+.|+||.+.+....+.++..|...+++...+
T Consensus 381 ~iY~l~Vv~IPtnkp---~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vL 457 (764)
T PRK12326 381 QFYDLGVSVIPPNKP---NIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVL 457 (764)
T ss_pred HHhCCcEEECCCCCC---ceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceee
Confidence 333333222211100 00001122345567788888888887777789999999999999999999999999999988
Q ss_pred cCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCC---------------CcEEEEecCCCCccccccCCCCcccCC
Q psy7557 353 YGDLSQEDREIALEDITSGYARICVATDVASRGLDVPD---------------LTHVINYDFPSHIEEYVHRVGRTGRAG 417 (936)
Q Consensus 353 h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~---------------v~~VI~~d~p~s~~~y~qr~GRagR~g 417 (936)
++.-...+-..+-+.=+. -.|-|||+.++||.||.= ==+||-...|.|..--.|-.|||||-|
T Consensus 458 NAk~~~~EA~IIa~AG~~--gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQG 535 (764)
T PRK12326 458 NAKNDAEEARIIAEAGKY--GAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQG 535 (764)
T ss_pred ccCchHhHHHHHHhcCCC--CcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCC
Confidence 886443332222222233 359999999999999962 237999999999999999999999999
Q ss_pred CceeEEEEecccC
Q psy7557 418 KSGESITLMTRKD 430 (936)
Q Consensus 418 ~~g~~~~~~~~~~ 430 (936)
.+|.+-.|++-+|
T Consensus 536 DpGss~f~lSleD 548 (764)
T PRK12326 536 DPGSSVFFVSLED 548 (764)
T ss_pred CCCceeEEEEcch
Confidence 9999999999766
No 211
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.84 E-value=1.4e-19 Score=212.94 Aligned_cols=144 Identities=19% Similarity=0.198 Sum_probs=122.4
Q ss_pred hhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccC
Q psy7557 306 EKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRG 385 (936)
Q Consensus 306 ~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~G 385 (936)
.+...+...+......+.+++|||+++..++.+++.|...++++..+||++++.+|..+++.|+.|++.|||||+++++|
T Consensus 430 ~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rG 509 (652)
T PRK05298 430 GQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREG 509 (652)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCC
Confidence 44566777776655678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEecC-----CCCccccccCCCCcccCCCceeEEEEeccc---------ChhhHHhHHHHHhhcCCccch
Q psy7557 386 LDVPDLTHVINYDF-----PSHIEEYVHRVGRTGRAGKSGESITLMTRK---------DWSHAHEIIPILEEGGHESYM 450 (936)
Q Consensus 386 iDip~v~~VI~~d~-----p~s~~~y~qr~GRagR~g~~g~~~~~~~~~---------~~~~~~~l~~~l~~~~~~~~~ 450 (936)
+|+|++++||++|. |.+..+|+||+|||||. ..|.+++|++.. |....+++...+......+|.
T Consensus 510 fdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 587 (652)
T PRK05298 510 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPK 587 (652)
T ss_pred ccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCCh
Confidence 99999999999885 78999999999999996 789999999853 344444555555544444443
No 212
>KOG0949|consensus
Probab=99.84 E-value=7.3e-20 Score=205.36 Aligned_cols=159 Identities=21% Similarity=0.261 Sum_probs=114.8
Q ss_pred CCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHh-c
Q psy7557 615 SFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK-I 693 (936)
Q Consensus 615 g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~-~ 693 (936)
+| .|..+|.+.+..+-.+..++++|||.+|||.+---.+ +..+. .....-+|+++||++|+.|+...+.. +
T Consensus 509 dF-~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~i-EKVLR------esD~~VVIyvaPtKaLVnQvsa~VyaRF 580 (1330)
T KOG0949|consen 509 DF-CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAI-EKVLR------ESDSDVVIYVAPTKALVNQVSANVYARF 580 (1330)
T ss_pred cc-CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHH-HHHHh------hcCCCEEEEecchHHHhhhhhHHHHHhh
Confidence 45 7899999999999999999999999999998644333 33322 24567899999999999998877755 3
Q ss_pred c-CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHc---CCCCCCCceEEEEcccchhccCCCHHHHHHHhh
Q psy7557 694 D-YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSR---ASIDLKAVSFVVLDEADRMLDLGFEPQINKTSI 769 (936)
Q Consensus 694 ~-~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~---~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~ 769 (936)
. ..-.+...+.|....+.+.. ..+|+|+|+-|+.+..++.. ..-+..+++++|+||+|.+....-.-..+.+..
T Consensus 581 ~~~t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~ 658 (1330)
T KOG0949|consen 581 DTKTFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLL 658 (1330)
T ss_pred ccCccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHH
Confidence 2 22233344455433332222 23599999999999998877 345678999999999999876543333444433
Q ss_pred hcCCCceEEEEEecCC
Q psy7557 770 YINPNRQTVMTSATWN 785 (936)
Q Consensus 770 ~~~~~~q~v~~SAT~~ 785 (936)
.. .++++++|||+.
T Consensus 659 li--~CP~L~LSATig 672 (1330)
T KOG0949|consen 659 LI--PCPFLVLSATIG 672 (1330)
T ss_pred hc--CCCeeEEecccC
Confidence 33 578999999984
No 213
>KOG0949|consensus
Probab=99.84 E-value=1.2e-19 Score=203.58 Aligned_cols=158 Identities=22% Similarity=0.259 Sum_probs=113.3
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHh-ccCC
Q psy7557 98 TPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK-IDYK 176 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~-~~~~ 176 (936)
.|..+|.+.+..+=.++.++++|||.+|||.+--. ++...+. ..+..-+|+++||++|+.|+...+.. |...
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY-~iEKVLR------esD~~VVIyvaPtKaLVnQvsa~VyaRF~~~ 583 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFY-AIEKVLR------ESDSDVVIYVAPTKALVNQVSANVYARFDTK 583 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHH-HHHHHHh------hcCCCEEEEecchHHHhhhhhHHHHHhhccC
Confidence 78999999999999999999999999999986433 3333332 24566899999999999998877765 4222
Q ss_pred -CCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHc---CCcCCCCceEEEEccchhhhcCCCHHHHHHHHhhcC
Q psy7557 177 -GLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSR---ASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYIN 252 (936)
Q Consensus 177 -~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~---~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~ 252 (936)
-.+...+.|....+-+. -.-+|+|+|+-|+.+..+|.. ..-...+++++|+||+|.+..+.-.-.+++++...
T Consensus 584 t~~rg~sl~g~ltqEYsi--np~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li- 660 (1330)
T KOG0949|consen 584 TFLRGVSLLGDLTQEYSI--NPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI- 660 (1330)
T ss_pred ccccchhhHhhhhHHhcC--CchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc-
Confidence 22223333332222111 123599999999999888876 34457899999999999998765444555555444
Q ss_pred CCCcEEEEEeccch
Q psy7557 253 PNRQTVMTSATWNK 266 (936)
Q Consensus 253 ~~~q~~~~SAT~~~ 266 (936)
.+.++++|||+.+
T Consensus 661 -~CP~L~LSATigN 673 (1330)
T KOG0949|consen 661 -PCPFLVLSATIGN 673 (1330)
T ss_pred -CCCeeEEecccCC
Confidence 3789999999863
No 214
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.84 E-value=1.7e-19 Score=215.95 Aligned_cols=320 Identities=17% Similarity=0.212 Sum_probs=214.4
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhc
Q psy7557 98 TPSPIQAQAWPILM----SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 173 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~----~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 173 (936)
++.|+|.+++.-+. .|.+.|++-..|.|||+..+. ++..+.... .....+|||||. .|..|+.+++.++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIa-lL~~L~~~~-----~~~gp~LIVvP~-SlL~nW~~Ei~kw 241 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTIS-LLGYLHEYR-----GITGPHMVVAPK-STLGNWMNEIRRF 241 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHH-HHHHHHHhc-----CCCCCEEEEeCh-HHHHHHHHHHHHH
Confidence 68999999998764 578899999999999997543 333332211 223357999996 6778899999997
Q ss_pred cCCCCEEEEEeCCccchHHHHH--h-hcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHHHhh
Q psy7557 174 DYKGLKAVCVYGGKEIEPQLEK--I-REGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIY 250 (936)
Q Consensus 174 ~~~~~~~~~~~gg~~~~~~~~~--~-~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~ 250 (936)
. ..+++..++|.......... + ....+|+|+|.+.+..... .+.--..++||+||||++-... ....+.+..
T Consensus 242 ~-p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~~--Sklskalr~ 316 (1033)
T PLN03142 242 C-PVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNEN--SLLSKTMRL 316 (1033)
T ss_pred C-CCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCHH--HHHHHHHHH
Confidence 5 34667777775443322211 1 2347999999988754321 1222346799999999985432 223333444
Q ss_pred cCCCCcEEEEEeccchH----HHHHHHHhcCC-----------------------------------------------C
Q psy7557 251 INPNRQTVMTSATWNKD----VQRVAKKYMVN-----------------------------------------------P 279 (936)
Q Consensus 251 ~~~~~q~~~~SAT~~~~----~~~~~~~~~~~-----------------------------------------------~ 279 (936)
+. ....+++|+|+-.+ +..++..+..+ |
T Consensus 317 L~-a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LP 395 (1033)
T PLN03142 317 FS-TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 395 (1033)
T ss_pred hh-cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCC
Confidence 43 33458899996321 11111110000 0
Q ss_pred ----EEEEeCCCCcc----------------------------------cCCc-e----------EEEEEEeCchhhHHH
Q psy7557 280 ----VKVNVGSLDLA----------------------------------ATHT-V----------TQKIIILDEDEKKDW 310 (936)
Q Consensus 280 ----~~i~~~~~~~~----------------------------------~~~~-~----------~~~~~~~~~~~k~~~ 310 (936)
..+.+...... ..++ + ...-..+....|...
T Consensus 396 pK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~l 475 (1033)
T PLN03142 396 PKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVL 475 (1033)
T ss_pred CceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHH
Confidence 00111100000 0000 0 000001122356666
Q ss_pred HHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcC---CcEEEEEecccccCCC
Q psy7557 311 LMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSG---YARICVATDVASRGLD 387 (936)
Q Consensus 311 l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g---~~~vLvaT~~~~~GiD 387 (936)
|..++..+...+.++|||+......+.+..+|...++..+.+||+++..+|..+++.|... ..-+|++|.+.+.|||
T Consensus 476 LdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGIN 555 (1033)
T PLN03142 476 LDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGIN 555 (1033)
T ss_pred HHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCc
Confidence 7777777767789999999999999999999999999999999999999999999999753 3467899999999999
Q ss_pred CCCCcEEEEecCCCCccccccCCCCcccCCCcee--EEEEecccC
Q psy7557 388 VPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGE--SITLMTRKD 430 (936)
Q Consensus 388 ip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~--~~~~~~~~~ 430 (936)
+..+++||+||+|+++....|++||+-|-|+... .+.|++.+.
T Consensus 556 Lt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gT 600 (1033)
T PLN03142 556 LATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYT 600 (1033)
T ss_pred hhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCc
Confidence 9999999999999999999999999999998754 445555553
No 215
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.83 E-value=3.4e-19 Score=207.97 Aligned_cols=288 Identities=20% Similarity=0.259 Sum_probs=199.4
Q ss_pred HHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc-c-CCCCEEEEE
Q psy7557 626 AWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI-D-YKGLKAVCV 703 (936)
Q Consensus 626 ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~-~-~~~~~~~~~ 703 (936)
.+..+.+..-++++||||||||. .+|.+..-.. ...+.++.+.-|.|--|..+++++..- + ..|-.++..
T Consensus 58 i~~ai~~~~vvii~getGsGKTT--qlP~~lle~g------~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~ 129 (845)
T COG1643 58 ILKAIEQNQVVIIVGETGSGKTT--QLPQFLLEEG------LGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYS 129 (845)
T ss_pred HHHHHHhCCEEEEeCCCCCChHH--HHHHHHHhhh------cccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEE
Confidence 33444456678999999999998 5565433211 134568899999997777888877663 2 224334333
Q ss_pred ECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccch-hccCCCH-HHHHHHhhhcCCCceEEEEE
Q psy7557 704 YGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADR-MLDLGFE-PQINKTSIYINPNRQTVMTS 781 (936)
Q Consensus 704 ~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~-l~~~~~~-~~~~~i~~~~~~~~q~v~~S 781 (936)
.-..+. ......|-++|.|.|...+..... ++.+++|||||+|. -++..+. ..+..+....+++.++|.+|
T Consensus 130 iRfe~~------~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimS 202 (845)
T COG1643 130 IRFESK------VSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMS 202 (845)
T ss_pred EEeecc------CCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEe
Confidence 222111 122368999999999999987664 89999999999995 2232222 23344566667789999999
Q ss_pred ecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEE-EEcCcch-hHHHHHHHHHh-ccCCCCcEEEEcCChHHHHHH
Q psy7557 782 ATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKI-IILDEDE-KKDWLMEFFDN-MDEERDKVMVFMGRKASVSAM 858 (936)
Q Consensus 782 AT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~-k~~~l~~~l~~-~~~~~~~~iIF~~s~~~~~~l 858 (936)
||+ +.+++...|...|+ +.+..... .+.-++ ....... -...+...+.. .....+.+|||.+...+.+.+
T Consensus 203 ATl--d~~rfs~~f~~apv-i~i~GR~f----PVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~ 275 (845)
T COG1643 203 ATL--DAERFSAYFGNAPV-IEIEGRTY----PVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERT 275 (845)
T ss_pred ccc--CHHHHHHHcCCCCE-EEecCCcc----ceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHH
Confidence 998 45666666655554 33333222 222222 1111222 22223333322 234578899999999999999
Q ss_pred HHHHHh--c--CCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEEccC---------------
Q psy7557 859 SSDLAC--Q--YRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDF--------------- 919 (936)
Q Consensus 859 ~~~L~~--~--~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~--------------- 919 (936)
++.|.. . ...++.+||.|+.+++.++++--..|+.+|++||++++.+|.||+|.+||.-+.
T Consensus 276 ~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L 355 (845)
T COG1643 276 AEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRL 355 (845)
T ss_pred HHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceee
Confidence 999987 2 356788999999999999988888887789999999999999999999997543
Q ss_pred ---CCChhhhHhhhhhccC
Q psy7557 920 ---PSHIEEYVHRVGRTGE 935 (936)
Q Consensus 920 ---p~s~~~yiqr~GRaGR 935 (936)
|-|-.+..||.|||||
T Consensus 356 ~~~~ISqAsA~QRaGRAGR 374 (845)
T COG1643 356 ETEPISKASADQRAGRAGR 374 (845)
T ss_pred eEEEechhhhhhhcccccc
Confidence 4567788999999999
No 216
>KOG0923|consensus
Probab=99.83 E-value=3.5e-19 Score=192.55 Aligned_cols=306 Identities=19% Similarity=0.260 Sum_probs=208.6
Q ss_pred cHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHh-cc-CCC
Q psy7557 100 SPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK-ID-YKG 177 (936)
Q Consensus 100 ~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~-~~-~~~ 177 (936)
.++-.+.+.++...+-+++.|.||||||. .+|-+.+-... ...|.++-+.-|.|.-|..++.++.+ ++ ..|
T Consensus 267 y~ykdell~av~e~QVLiI~GeTGSGKTT--QiPQyL~EaGy-----tk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG 339 (902)
T KOG0923|consen 267 YPYKDELLKAVKEHQVLIIVGETGSGKTT--QIPQYLYEAGY-----TKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLG 339 (902)
T ss_pred hhhHHHHHHHHHhCcEEEEEcCCCCCccc--cccHHHHhccc-----ccCCceEeecCcchHHHHHHHHHHHHHhCcccc
Confidence 45556666777777888999999999998 67866544322 13455688999999999999887766 32 122
Q ss_pred CEEEEE--eCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchh-hhcCCCH-HHHHHHHhhcCC
Q psy7557 178 LKAVCV--YGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADR-MLDLGFE-PQINKTSIYINP 253 (936)
Q Consensus 178 ~~~~~~--~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~-l~~~~~~-~~~~~i~~~~~~ 253 (936)
-.|+.- +.+... +.+-|-+.|.|+|+.-+... .+|....++||||||. -+..+.. ..+..| ..+++
T Consensus 340 ~eVGYsIRFEdcTS--------ekTvlKYMTDGmLlREfL~e-pdLasYSViiiDEAHERTL~TDILfgLvKDI-ar~Rp 409 (902)
T KOG0923|consen 340 HEVGYSIRFEDCTS--------EKTVLKYMTDGMLLREFLSE-PDLASYSVIIVDEAHERTLHTDILFGLVKDI-ARFRP 409 (902)
T ss_pred cccceEEEeccccC--------cceeeeeecchhHHHHHhcc-ccccceeEEEeehhhhhhhhhhHHHHHHHHH-HhhCC
Confidence 222111 111111 22567899999998765443 4588999999999993 3322211 222232 34568
Q ss_pred CCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHH-HHHhc-cCCCCcEEEEeCc
Q psy7557 254 NRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLME-FFDNM-DEERDKVMVFMGR 331 (936)
Q Consensus 254 ~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~-~l~~~-~~~~~~~iVF~~~ 331 (936)
+..+++.|||+. ...+...|-.-|+.. +... ..++.-.+...++.+=.+..+. ++.-+ ..+.+-+|||...
T Consensus 410 dLKllIsSAT~D--AekFS~fFDdapIF~-iPGR----RyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltG 482 (902)
T KOG0923|consen 410 DLKLLISSATMD--AEKFSAFFDDAPIFR-IPGR----RYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTG 482 (902)
T ss_pred cceEEeeccccC--HHHHHHhccCCcEEe-ccCc----ccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEecc
Confidence 999999999985 445555544444433 2222 2234444444444333333222 22222 2456889999999
Q ss_pred hHHHHHHHHHhhhc---------CCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEecC---
Q psy7557 332 KASVSAMSSDLACQ---------YRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDF--- 399 (936)
Q Consensus 332 ~~~~~~l~~~L~~~---------~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~--- 399 (936)
..+.+...+.|... .+-++.+|+.++.+.+..+++---.|..+|++||++++..+-|++|.+||.-++
T Consensus 483 QeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~ 562 (902)
T KOG0923|consen 483 QEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQ 562 (902)
T ss_pred HHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccc
Confidence 88877776666532 234678999999999999999999999999999999999999999999995554
Q ss_pred ---------------CCCccccccCCCCcccCCCceeEEEEecccC
Q psy7557 400 ---------------PSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430 (936)
Q Consensus 400 ---------------p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~ 430 (936)
|-|-++-.||.|||||.| +|.|+-+++...
T Consensus 563 nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~a 607 (902)
T KOG0923|consen 563 NSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAWA 607 (902)
T ss_pred cCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechhh
Confidence 346677789999999997 899999998543
No 217
>KOG0924|consensus
Probab=99.83 E-value=4.1e-19 Score=192.21 Aligned_cols=308 Identities=18% Similarity=0.227 Sum_probs=202.6
Q ss_pred cHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHh-cc-CCC
Q psy7557 100 SPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK-ID-YKG 177 (936)
Q Consensus 100 ~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~-~~-~~~ 177 (936)
...+.+.+..+..++-+++++.||||||. .+|-+...... .....+-+..|.|.-|..+++.+.. ++ ..|
T Consensus 358 f~~R~~ll~~ir~n~vvvivgETGSGKTT--Ql~QyL~edGY------~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG 429 (1042)
T KOG0924|consen 358 FACRDQLLSVIRENQVVVIVGETGSGKTT--QLAQYLYEDGY------ADNGMIGCTQPRRVAAISVAKRVAEEMGVTLG 429 (1042)
T ss_pred HHHHHHHHHHHhhCcEEEEEecCCCCchh--hhHHHHHhccc------ccCCeeeecCchHHHHHHHHHHHHHHhCCccc
Confidence 44455555556666778888999999998 45544332211 3345788899999999999888876 42 223
Q ss_pred CEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchh-hhcCCCHHHHHHHHhhcCCCCc
Q psy7557 178 LKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADR-MLDLGFEPQINKTSIYINPNRQ 256 (936)
Q Consensus 178 ~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~-l~~~~~~~~~~~i~~~~~~~~q 256 (936)
-.|+....=.+.. ...+.|-+.|.|.|+.-.... -.|.+...||+||||. -++....-.+.+....-+.+..
T Consensus 430 ~~VGYsIRFEdvT------~~~T~IkymTDGiLLrEsL~d-~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlK 502 (1042)
T KOG0924|consen 430 DTVGYSIRFEDVT------SEDTKIKYMTDGILLRESLKD-RDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLK 502 (1042)
T ss_pred cccceEEEeeecC------CCceeEEEeccchHHHHHhhh-hhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccce
Confidence 3332221111110 022578899999987644332 2477899999999994 2332222222333333456889
Q ss_pred EEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHH-HHHHHHhc-cCCCCcEEEEeCchHH
Q psy7557 257 TVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDW-LMEFFDNM-DEERDKVMVFMGRKAS 334 (936)
Q Consensus 257 ~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~-l~~~l~~~-~~~~~~~iVF~~~~~~ 334 (936)
++..|||+. .+.+...|...|.. .+... ..++.-.+...+-++=.++ +.+.+.-+ ....+-++||......
T Consensus 503 liVtSATm~--a~kf~nfFgn~p~f-~IpGR----TyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqed 575 (1042)
T KOG0924|consen 503 LIVTSATMD--AQKFSNFFGNCPQF-TIPGR----TYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQED 575 (1042)
T ss_pred EEEeecccc--HHHHHHHhCCCcee-eecCC----ccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcc
Confidence 999999984 55677766655543 33222 1223333322222222222 22222222 2345789999988876
Q ss_pred HHHHHHHhhhc----------CCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEecC-----
Q psy7557 335 VSAMSSDLACQ----------YRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDF----- 399 (936)
Q Consensus 335 ~~~l~~~L~~~----------~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~----- 399 (936)
++..+..+.+. +..+..++++|++.-+.++++.-..|..+++|||++++..+-+|++.+||..+.
T Consensus 576 iE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kv 655 (1042)
T KOG0924|consen 576 IECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKV 655 (1042)
T ss_pred hhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeee
Confidence 66555554431 467788999999999999999999999999999999999999999999996554
Q ss_pred -------------CCCccccccCCCCcccCCCceeEEEEecccC
Q psy7557 400 -------------PSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430 (936)
Q Consensus 400 -------------p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~ 430 (936)
|-|-+.-.||.|||||.| +|.|+-+++++.
T Consensus 656 yn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~a 698 (1042)
T KOG0924|consen 656 YNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTEDA 698 (1042)
T ss_pred cccccccceeEEEechhccchhhccccCCCC-CcceeeehhhhH
Confidence 456777889999999996 899999999753
No 218
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.83 E-value=4.4e-19 Score=204.04 Aligned_cols=316 Identities=21% Similarity=0.243 Sum_probs=205.6
Q ss_pred CCcHHHHHHHHHHhcC----CcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhc
Q psy7557 98 TPSPIQAQAWPILMSG----HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 173 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~~g----~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 173 (936)
.+++-|..|...+.+. .-.++.+.||||||.+|+=. +...+ ..|..+|+|+|-.+|.-|+.+.|+..
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~-i~~~L--------~~GkqvLvLVPEI~Ltpq~~~rf~~r 268 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEA-IAKVL--------AQGKQVLVLVPEIALTPQLLARFKAR 268 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHH-HHHHH--------HcCCEEEEEeccccchHHHHHHHHHH
Confidence 6789999999998755 57899999999999998754 44443 45789999999999999999999883
Q ss_pred cCCCCEEEEEeCCccc---hHHHHHhhcC-CcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhh---cCCCHHHHHH
Q psy7557 174 DYKGLKAVCVYGGKEI---EPQLEKIREG-CHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRML---DLGFEPQINK 246 (936)
Q Consensus 174 ~~~~~~~~~~~gg~~~---~~~~~~~~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~---~~~~~~~~~~ 246 (936)
.|.++..++++-+. ...|.+...| ..|||||-..+ ...++++.+||+||-|--. +.+.+...+.
T Consensus 269 --Fg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhARd 339 (730)
T COG1198 269 --FGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHARD 339 (730)
T ss_pred --hCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccCCcCCCcCHHH
Confidence 24677777776543 4456666655 89999995433 3468999999999999542 1222222222
Q ss_pred H--HhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhH-----HHHHHHHHhcc
Q psy7557 247 T--SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKK-----DWLMEFFDNMD 319 (936)
Q Consensus 247 i--~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~-----~~l~~~l~~~~ 319 (936)
+ ...-..+.++|+-|||.+-+....+... ....+............-.+.+.+-....+. ..|++.+....
T Consensus 340 vA~~Ra~~~~~pvvLgSATPSLES~~~~~~g--~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l 417 (730)
T COG1198 340 VAVLRAKKENAPVVLGSATPSLESYANAESG--KYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTL 417 (730)
T ss_pred HHHHHHHHhCCCEEEecCCCCHHHHHhhhcC--ceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHH
Confidence 2 2223357899999999764444333221 1122222211111101111111111222222 45666666666
Q ss_pred CCCCcEEEEeCchHHHHHHHH-----Hhhhc-------------------------------------------------
Q psy7557 320 EERDKVMVFMGRKASVSAMSS-----DLACQ------------------------------------------------- 345 (936)
Q Consensus 320 ~~~~~~iVF~~~~~~~~~l~~-----~L~~~------------------------------------------------- 345 (936)
..+.++|+|.|++.-+..+.. .+.|.
T Consensus 418 ~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gterie 497 (730)
T COG1198 418 ERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIE 497 (730)
T ss_pred hcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHH
Confidence 788999999999875432211 11110
Q ss_pred --------CCceeeecCCCCH--HHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEecCC------------CCc
Q psy7557 346 --------YRKSCSLYGDLSQ--EDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFP------------SHI 403 (936)
Q Consensus 346 --------~~~~~~~h~~~~~--~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p------------~s~ 403 (936)
+.++..+.++.+. ..-+..+..|.+|+++|||.|..++.|.|+|++++|...|.- +..
T Consensus 498 eeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~f 577 (730)
T COG1198 498 EELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTF 577 (730)
T ss_pred HHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHH
Confidence 1122223333332 223567899999999999999999999999999997755442 134
Q ss_pred cccccCCCCcccCCCceeEEEEecccChhh
Q psy7557 404 EEYVHRVGRTGRAGKSGESITLMTRKDWSH 433 (936)
Q Consensus 404 ~~y~qr~GRagR~g~~g~~~~~~~~~~~~~ 433 (936)
..+.|-.|||||.+.+|..++-.-..|...
T Consensus 578 qll~QvaGRAgR~~~~G~VvIQT~~P~hp~ 607 (730)
T COG1198 578 QLLMQVAGRAGRAGKPGEVVIQTYNPDHPA 607 (730)
T ss_pred HHHHHHHhhhccCCCCCeEEEEeCCCCcHH
Confidence 456899999999999999988877666443
No 219
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.82 E-value=2e-18 Score=201.29 Aligned_cols=112 Identities=20% Similarity=0.248 Sum_probs=103.5
Q ss_pred chhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCcc
Q psy7557 825 DEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASR 904 (936)
Q Consensus 825 ~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~ 904 (936)
..+...+...+......+.++||||+|+..++.++..|...++.+..+||++++.+|..+++.|++|++.|||||+++++
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~r 504 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLRE 504 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcC
Confidence 44556677777666567789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEcc-----CCCChhhhHhhhhhccCC
Q psy7557 905 GLDVPDLTHVINYD-----FPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 905 Gidip~v~~VI~~d-----~p~s~~~yiqr~GRaGR~ 936 (936)
|+|+|++++||++| .|.+..+|+||+|||||.
T Consensus 505 GfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~ 541 (655)
T TIGR00631 505 GLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 541 (655)
T ss_pred CeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC
Confidence 99999999999988 799999999999999995
No 220
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.82 E-value=3.4e-18 Score=208.89 Aligned_cols=332 Identities=18% Similarity=0.203 Sum_probs=202.2
Q ss_pred CHHHHHHHHhCCCCCCcHHHHHHHH----HHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCc
Q psy7557 84 YPEILRQLENLSFTTPSPIQAQAWP----ILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPT 159 (936)
Q Consensus 84 ~~~l~~~l~~~g~~~~~~~Q~~ai~----~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt 159 (936)
.+...+.+...|| +++|.|.+.+. .+..|+++++.||||+|||++|++|++.... .+.+++|.+||
T Consensus 232 ~~~~~~~~~~~~~-~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~---------~~~~vvi~t~t 301 (850)
T TIGR01407 232 SSLFSKNIDRLGL-EYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI---------TEKPVVISTNT 301 (850)
T ss_pred cHHHHHhhhhcCC-ccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc---------CCCeEEEEeCc
Confidence 3456777888899 58999998776 4456889999999999999999999987653 24589999999
Q ss_pred HHHHHHHHH-HHHhc---cCCCCEEEEEeCCccc---h------------HH----------------------------
Q psy7557 160 RELATQIER-EVNKI---DYKGLKAVCVYGGKEI---E------------PQ---------------------------- 192 (936)
Q Consensus 160 ~~La~Q~~~-~~~~~---~~~~~~~~~~~gg~~~---~------------~~---------------------------- 192 (936)
++|..|+.. .+..+ ....++++.+.|+... . ..
T Consensus 302 ~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~ 381 (850)
T TIGR01407 302 KVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGG 381 (850)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCc
Confidence 999999855 34433 2334777777765321 0 00
Q ss_pred ----HH------------------------HhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCC-----
Q psy7557 193 ----LE------------------------KIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLG----- 239 (936)
Q Consensus 193 ----~~------------------------~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~----- 239 (936)
+. +....++|||+.-.-|.+.+......+...+++||||||++.+..
T Consensus 382 ~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~ 461 (850)
T TIGR01407 382 NKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQ 461 (850)
T ss_pred chhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhc
Confidence 00 001135788888766655443332234556899999999976310
Q ss_pred --C-----HHH-------------------------------------------------------------HHH---HH
Q psy7557 240 --F-----EPQ-------------------------------------------------------------INK---TS 248 (936)
Q Consensus 240 --~-----~~~-------------------------------------------------------------~~~---i~ 248 (936)
+ ... ... ..
T Consensus 462 ~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~ 541 (850)
T TIGR01407 462 EELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFD 541 (850)
T ss_pred ceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 0 000 000 00
Q ss_pred hh---------------------c---------------------------CCCCcEEEEEeccch--HHHHHHHHhcCC
Q psy7557 249 IY---------------------I---------------------------NPNRQTVMTSATWNK--DVQRVAKKYMVN 278 (936)
Q Consensus 249 ~~---------------------~---------------------------~~~~q~~~~SAT~~~--~~~~~~~~~~~~ 278 (936)
.. . +....++++|||++. ....+.+.+..+
T Consensus 542 ~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~ 621 (850)
T TIGR01407 542 LALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLT 621 (850)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCC
Confidence 00 0 011367899999973 233333333322
Q ss_pred C-EEEEeCCCCcccCCceEE-EEEEeC---------chhhHHHHHHHHHhc-cCCCCcEEEEeCchHHHHHHHHHhhhcC
Q psy7557 279 P-VKVNVGSLDLAATHTVTQ-KIIILD---------EDEKKDWLMEFFDNM-DEERDKVMVFMGRKASVSAMSSDLACQY 346 (936)
Q Consensus 279 ~-~~i~~~~~~~~~~~~~~~-~~~~~~---------~~~k~~~l~~~l~~~-~~~~~~~iVF~~~~~~~~~l~~~L~~~~ 346 (936)
. ......... .....+ .+++.. ...-...+.+.+... ....++++||++|....+.++..|....
T Consensus 622 ~~~~~~~~~sp---f~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~ 698 (850)
T TIGR01407 622 DVHFNTIEPTP---LNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELP 698 (850)
T ss_pred ccccceecCCC---CCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhc
Confidence 1 111111000 010111 111111 111122333333222 2346799999999999999999987521
Q ss_pred --CceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCc--EEEEecCCCC--------------------
Q psy7557 347 --RKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLT--HVINYDFPSH-------------------- 402 (936)
Q Consensus 347 --~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~--~VI~~d~p~s-------------------- 402 (936)
.....+..+.. ..|..+++.|++|+..||+||+.+++|||+|+.. +||...+|..
T Consensus 699 ~~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~ 777 (850)
T TIGR01407 699 EFEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKN 777 (850)
T ss_pred cccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCC
Confidence 12223333433 5789999999999999999999999999999877 4667776631
Q ss_pred ----------ccccccCCCCcccCCCceeEEEEeccc
Q psy7557 403 ----------IEEYVHRVGRTGRAGKSGESITLMTRK 429 (936)
Q Consensus 403 ----------~~~y~qr~GRagR~g~~g~~~~~~~~~ 429 (936)
+..+.|-+||.=|.....-++++++..
T Consensus 778 ~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 778 PFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred chHHhhHHHHHHHHHHhhccccccCCceEEEEEEccc
Confidence 123468889999987664456666654
No 221
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=1.3e-18 Score=201.15 Aligned_cols=380 Identities=19% Similarity=0.186 Sum_probs=243.2
Q ss_pred hhcccCCccccccCcCCccccCCCHHHHHHHHhhCCCceEEeecCCCccCCCCCCCCCCcccChHHhhcCCHHHHHHH-H
Q psy7557 14 DKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQL-E 92 (936)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~f~~~~~~~~~l~~~l-~ 92 (936)
....++.++...+..-.+....+|+++..........- +. .+.. .+ .-..++|.+ +.++- .
T Consensus 16 r~l~~~~~~v~~i~~~e~~~~~lsd~eL~~~t~~~k~r-l~----~~~~-----ld-----~~l~eafA~---vrEa~~R 77 (913)
T PRK13103 16 REVKRMLKTVQIVNAFEEQMVALSDEQLRAKTAEFKAR-LA----KGET-----LD-----QLLPEAFAV---AREAGKR 77 (913)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HH----cCCC-----hh-----HHHHHHHHH---HHHHHHH
Confidence 34455556666666667889999998876443222100 00 0100 00 001122221 12222 2
Q ss_pred hCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHh
Q psy7557 93 NLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK 172 (936)
Q Consensus 93 ~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 172 (936)
.+|. .|+++|.-+--.+..|+ |+.+.||+|||+++.+|++...+ .|..+-|++||..||.|-++.+..
T Consensus 78 ~lGm-~~ydVQliGg~~Lh~G~--iaEM~TGEGKTLvA~l~a~l~al---------~G~~VhvvT~ndyLA~RD~e~m~~ 145 (913)
T PRK13103 78 VMGM-RHFDVQLIGGMTLHEGK--IAEMRTGEGKTLVGTLAVYLNAL---------SGKGVHVVTVNDYLARRDANWMRP 145 (913)
T ss_pred HhCC-CcchhHHHhhhHhccCc--cccccCCCCChHHHHHHHHHHHH---------cCCCEEEEeCCHHHHHHHHHHHHH
Confidence 3564 88999988776776765 89999999999999999987663 477899999999999999999999
Q ss_pred c-cCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchh-HHHHHcCC------cCCCCceEEEEccchhhh-cCC----
Q psy7557 173 I-DYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRL-NDFVSRAS------IDLKAVSFVVLDEADRML-DLG---- 239 (936)
Q Consensus 173 ~-~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~------~~~~~~~~lViDEah~l~-~~~---- 239 (936)
+ ...|+++.++.++.+........ .++|++||..-+ .|.|..+. .....+.+.||||+|.++ |..
T Consensus 146 l~~~lGl~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPL 223 (913)
T PRK13103 146 LYEFLGLSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPL 223 (913)
T ss_pred HhcccCCEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCce
Confidence 4 67899999998876654433322 389999999876 33333321 124789999999999875 211
Q ss_pred -----------CHHHHHHHHhhcC-------------------CCC----------------------------------
Q psy7557 240 -----------FEPQINKTSIYIN-------------------PNR---------------------------------- 255 (936)
Q Consensus 240 -----------~~~~~~~i~~~~~-------------------~~~---------------------------------- 255 (936)
....+..+...+. ...
T Consensus 224 IISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~ 303 (913)
T PRK13103 224 IISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHN 303 (913)
T ss_pred eecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhh
Confidence 1111111111110 001
Q ss_pred --------------------------------------------------------------------------------
Q psy7557 256 -------------------------------------------------------------------------------- 255 (936)
Q Consensus 256 -------------------------------------------------------------------------------- 255 (936)
T Consensus 304 ~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~ 383 (913)
T PRK13103 304 LGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRL 383 (913)
T ss_pred hHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHh
Confidence
Q ss_pred --cEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCchH
Q psy7557 256 --QTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKA 333 (936)
Q Consensus 256 --q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~ 333 (936)
.+.+||.|.......+..-|-.+.+.|...... ...-....++....+|...+.+.+......+.|+||-+.|..
T Consensus 384 Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP~---~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe 460 (913)
T PRK13103 384 YNKLSGMTGTADTEAFEFRQIYGLDVVVIPPNKPL---ARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIE 460 (913)
T ss_pred cchhccCCCCCHHHHHHHHHHhCCCEEECCCCCCc---ccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHH
Confidence 111222222222222222222221111111000 000112235566778888888888887788999999999999
Q ss_pred HHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCC------------------------
Q psy7557 334 SVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVP------------------------ 389 (936)
Q Consensus 334 ~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip------------------------ 389 (936)
..+.++..|...+++...+++.-...+-.-+-+.-+ .-.|-|||+.++||.||.
T Consensus 461 ~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa~AG~--~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~ 538 (913)
T PRK13103 461 TSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIAQAGR--PGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIK 538 (913)
T ss_pred HHHHHHHHHHHcCCcHHHhccccchhHHHHHHcCCC--CCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHH
Confidence 999999999999998877777644333333332222 345999999999999994
Q ss_pred -------------CCcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccC
Q psy7557 390 -------------DLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430 (936)
Q Consensus 390 -------------~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~ 430 (936)
+==+||--..+.|..-=-|-.|||||-|.+|.+-.|++-+|
T Consensus 539 ~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED 592 (913)
T PRK13103 539 ADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 592 (913)
T ss_pred HHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 22368888889999989999999999999999999999766
No 222
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.81 E-value=2.6e-18 Score=182.51 Aligned_cols=167 Identities=19% Similarity=0.188 Sum_probs=132.3
Q ss_pred CCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCchH
Q psy7557 254 NRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKA 333 (936)
Q Consensus 254 ~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~ 333 (936)
..|++..|||+.+.-...... +.+.-.+.+.. -+...+.+-+.....+.|+..+......+.+++|-+-|++
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~---~vveQiIRPTG-----LlDP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKk 457 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGG---NVVEQIIRPTG-----LLDPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKK 457 (663)
T ss_pred cCCEEEEECCCChHHHHhccC---ceeEEeecCCC-----CCCCceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHH
Confidence 359999999987543333221 11222222222 2222333444555666777777665567799999999999
Q ss_pred HHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEecC-----CCCcccccc
Q psy7557 334 SVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDF-----PSHIEEYVH 408 (936)
Q Consensus 334 ~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~-----p~s~~~y~q 408 (936)
.|+.|.++|...|+++..+|++...-+|.+++++++.|.++|||.-+.|-+|+|+|.|++|..+|. .+|-.+.+|
T Consensus 458 mAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQ 537 (663)
T COG0556 458 MAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQ 537 (663)
T ss_pred HHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998886 468999999
Q ss_pred CCCCcccCCCceeEEEEeccc
Q psy7557 409 RVGRTGRAGKSGESITLMTRK 429 (936)
Q Consensus 409 r~GRagR~g~~g~~~~~~~~~ 429 (936)
-+|||+|. ..|.++++.+.-
T Consensus 538 tIGRAARN-~~GkvIlYAD~i 557 (663)
T COG0556 538 TIGRAARN-VNGKVILYADKI 557 (663)
T ss_pred HHHHHhhc-cCCeEEEEchhh
Confidence 99999998 479999887653
No 223
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.81 E-value=3.9e-18 Score=204.45 Aligned_cols=306 Identities=16% Similarity=0.200 Sum_probs=204.3
Q ss_pred CCcHHHHHHHHhhh----cCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc
Q psy7557 618 TPSPIQAQAWPILM----SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693 (936)
Q Consensus 618 ~p~~iQ~~ai~~~l----~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 693 (936)
.+.|+|.+++..++ +|.+.|+.-..|.|||+..+. ++.++... .+....+|||||. .|..|+.+.+.++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIa-lL~~L~~~-----~~~~gp~LIVvP~-SlL~nW~~Ei~kw 241 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTIS-LLGYLHEY-----RGITGPHMVVAPK-STLGNWMNEIRRF 241 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHH-HHHHHHHh-----cCCCCCEEEEeCh-HHHHHHHHHHHHH
Confidence 78999999998765 578899999999999987543 33333211 1223457999996 6668899999998
Q ss_pred cCCCCEEEEEECCccchHHHH-H-H-hcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHHHhhh
Q psy7557 694 DYKGLKAVCVYGGKELEPQLE-K-I-REGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIY 770 (936)
Q Consensus 694 ~~~~~~~~~~~gg~~~~~~~~-~-l-~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~ 770 (936)
. ..+++..++|......... . + ....+|+|+|.+.+..... .+.--.+++||+||||++-.. ..........
T Consensus 242 ~-p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~--~Sklskalr~ 316 (1033)
T PLN03142 242 C-PVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNE--NSLLSKTMRL 316 (1033)
T ss_pred C-CCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCH--HHHHHHHHHH
Confidence 5 4566777776543222211 1 1 2347899999988755322 122235689999999997542 2223333334
Q ss_pred cCCCceEEEEEecCChH-HHH---HHHHhcC-------------------------------------------------
Q psy7557 771 INPNRQTVMTSATWNKD-VQR---VAKKYMV------------------------------------------------- 797 (936)
Q Consensus 771 ~~~~~q~v~~SAT~~~~-~~~---~~~~~~~------------------------------------------------- 797 (936)
+.. ...+++|+|+-.+ ..+ ++..+..
T Consensus 317 L~a-~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LP 395 (1033)
T PLN03142 317 FST-NYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 395 (1033)
T ss_pred hhc-CcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCC
Confidence 433 3458899995321 111 1110000
Q ss_pred CCe--EEEeCCCCc----------------------------------ccCCc-e----------EEEEEEcCcchhHHH
Q psy7557 798 NPV--KVNVGSLDL----------------------------------AATHT-V----------TQKIIILDEDEKKDW 830 (936)
Q Consensus 798 ~~~--~i~~~~~~~----------------------------------~~~~~-~----------~~~~~~~~~~~k~~~ 830 (936)
... .+.+..... ...+. + ...-..+....|+..
T Consensus 396 pK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~l 475 (1033)
T PLN03142 396 PKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVL 475 (1033)
T ss_pred CceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHH
Confidence 000 000000000 00000 0 000001122356666
Q ss_pred HHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcC---CCcEEEecccCccCCC
Q psy7557 831 LMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSG---YARICVATDVASRGLD 907 (936)
Q Consensus 831 l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g---~~~vLVaT~~~~~Gid 907 (936)
|..++......+.++|||+......+.|...|...++..+.+||+++..+|..+++.|.+. ..-+|++|.+.+.|||
T Consensus 476 LdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGIN 555 (1033)
T PLN03142 476 LDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGIN 555 (1033)
T ss_pred HHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCc
Confidence 7777777766788999999999999999999999999999999999999999999999753 3457999999999999
Q ss_pred CCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 908 VPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 908 ip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
+..+++||+||+|.++....|++||+-|.
T Consensus 556 Lt~Ad~VIiyD~dWNP~~d~QAidRaHRI 584 (1033)
T PLN03142 556 LATADIVILYDSDWNPQVDLQAQDRAHRI 584 (1033)
T ss_pred hhhCCEEEEeCCCCChHHHHHHHHHhhhc
Confidence 99999999999999999999999999883
No 224
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.81 E-value=3.2e-18 Score=194.80 Aligned_cols=286 Identities=22% Similarity=0.293 Sum_probs=193.4
Q ss_pred HHHHHHhC-CCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHH
Q psy7557 607 ILRQLENL-SFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQ 685 (936)
Q Consensus 607 ~~~~l~~~-g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q 685 (936)
+.+.+++. || .|+..|.-....+..|+++-++||||.|||.--++..+ .+. ..|.+++||+||..|+.|
T Consensus 71 ~~~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl-~~a--------~kgkr~yii~PT~~Lv~Q 140 (1187)
T COG1110 71 FEEFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSL-YLA--------KKGKRVYIIVPTTTLVRQ 140 (1187)
T ss_pred HHHHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHH-HHH--------hcCCeEEEEecCHHHHHH
Confidence 33444444 55 99999999999999999999999999999974333322 221 457899999999999999
Q ss_pred HHHHHHhccCC--CCEEEE-EECCccch---HHHHHHhc-CceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccC
Q psy7557 686 IEREVNKIDYK--GLKAVC-VYGGKELE---PQLEKIRE-GCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDL 758 (936)
Q Consensus 686 ~~~~~~~~~~~--~~~~~~-~~gg~~~~---~~~~~l~~-~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~ 758 (936)
+++.++++... +..+-. .++..+.. ....++.+ +.||+|+|..-|..-... +.--+++++++|.+|.++..
T Consensus 141 ~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~Lka 218 (1187)
T COG1110 141 VYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILKA 218 (1187)
T ss_pred HHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHhc
Confidence 99999998411 233333 34432322 23344555 489999998766554432 11136889999999977643
Q ss_pred C-----------CHHH-------HHHHhhh------------------------cCCCceEEEEEecCChHH-H-HHHHH
Q psy7557 759 G-----------FEPQ-------INKTSIY------------------------INPNRQTVMTSATWNKDV-Q-RVAKK 794 (936)
Q Consensus 759 ~-----------~~~~-------~~~i~~~------------------------~~~~~q~v~~SAT~~~~~-~-~~~~~ 794 (936)
+ |... +..+... -....+++..|||..+.- + .+.+.
T Consensus 219 skNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfRe 298 (1187)
T COG1110 219 SKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRE 298 (1187)
T ss_pred cccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHH
Confidence 2 2221 1111111 113358999999975432 1 23333
Q ss_pred hcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCC---hHHHHHHHHHHHhcCCceEE
Q psy7557 795 YMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGR---KASVSAMSSDLACQYRKSCS 871 (936)
Q Consensus 795 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s---~~~~~~l~~~L~~~~~~~~~ 871 (936)
++. ..++..... ..++...+... .....+..+++.+ +.-.|||++. +..++++++.|...|+++..
T Consensus 299 Llg----FevG~~~~~-LRNIvD~y~~~---~~~e~~~elvk~l---G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~ 367 (1187)
T COG1110 299 LLG----FEVGSGGEG-LRNIVDIYVES---ESLEKVVELVKKL---GDGGLIFVPIDYGREKAEELAEYLRSHGINAEL 367 (1187)
T ss_pred HhC----CccCccchh-hhheeeeeccC---ccHHHHHHHHHHh---CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEE
Confidence 331 122222111 11222222221 4455566677766 3457999999 99999999999999999999
Q ss_pred EeCCCCHHHHHHHHHHhhcCCCcEEEec----ccCccCCCCCC-CCEEEEccCC
Q psy7557 872 LYGDLSQEDREIALEDITSGYARICVAT----DVASRGLDVPD-LTHVINYDFP 920 (936)
Q Consensus 872 ~h~~l~~~~R~~~~~~F~~g~~~vLVaT----~~~~~Gidip~-v~~VI~~d~p 920 (936)
+|+. .+..++.|..|++++||+. .++.||+|+|. +..+|.|+.|
T Consensus 368 ~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 368 IHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred eecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 9984 3788999999999999887 57999999996 6789999999
No 225
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.80 E-value=4.5e-18 Score=201.15 Aligned_cols=300 Identities=15% Similarity=0.130 Sum_probs=178.6
Q ss_pred CcHHHHHHHHHHh----c------CCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHH
Q psy7557 99 PSPIQAQAWPILM----S------GHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIER 168 (936)
Q Consensus 99 ~~~~Q~~ai~~~~----~------g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~ 168 (936)
|++.|..|+..+. + .+..+++++||||||++++..+...+ . ....+++|||+|+++|..|+.+
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~------~~~~~~vl~lvdR~~L~~Q~~~ 311 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-E------LLKNPKVFFVVDRRELDYQLMK 311 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-h------hcCCCeEEEEECcHHHHHHHHH
Confidence 6888999998753 2 25789999999999998765443222 1 1346899999999999999999
Q ss_pred HHHhccCCCCEEEEEeCCccchHHHHHhhc-CCcEEEeCCchhHHHHHcC--CcCCCCc-eEEEEccchhhhcCCCHHHH
Q psy7557 169 EVNKIDYKGLKAVCVYGGKEIEPQLEKIRE-GCHILIATPGRLNDFVSRA--SIDLKAV-SFVVLDEADRMLDLGFEPQI 244 (936)
Q Consensus 169 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~l~~~--~~~~~~~-~~lViDEah~l~~~~~~~~~ 244 (936)
.|..+..... .+..+.......+.. ...|+|+|.+++...+... .....+- .+||+||||+.....+...+
T Consensus 312 ~f~~~~~~~~-----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~~~l 386 (667)
T TIGR00348 312 EFQSLQKDCA-----ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELAKNL 386 (667)
T ss_pred HHHhhCCCCC-----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHHHHH
Confidence 9998753211 111122222222322 2689999999997644321 1111111 38999999997533333222
Q ss_pred HHHHhhcCCCCcEEEEEeccchHHHH-HHHHh---cCCCEEEEeCCCCcccCC---ceEEEEEE----eCch--------
Q psy7557 245 NKTSIYINPNRQTVMTSATWNKDVQR-VAKKY---MVNPVKVNVGSLDLAATH---TVTQKIII----LDED-------- 305 (936)
Q Consensus 245 ~~i~~~~~~~~q~~~~SAT~~~~~~~-~~~~~---~~~~~~i~~~~~~~~~~~---~~~~~~~~----~~~~-------- 305 (936)
. ..+ ++...++||||+-..-.. -...+ ..+++.. ..-.+..... ++...... .+..
T Consensus 387 ~---~~~-p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~-Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~ 461 (667)
T TIGR00348 387 K---KAL-KNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHR-YFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDE 461 (667)
T ss_pred H---hhC-CCCcEEEEeCCCcccccccccccccCCCCCeEEE-eeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHH
Confidence 2 233 457899999997532111 00111 1122111 0000000000 00000000 0000
Q ss_pred -------------------------------hhHHHHHH-HHHhc----cCCCCcEEEEeCchHHHHHHHHHhhhcC---
Q psy7557 306 -------------------------------EKKDWLME-FFDNM----DEERDKVMVFMGRKASVSAMSSDLACQY--- 346 (936)
Q Consensus 306 -------------------------------~k~~~l~~-~l~~~----~~~~~~~iVF~~~~~~~~~l~~~L~~~~--- 346 (936)
.....+.. ++..+ .....+++|||.++..|..+++.|....
T Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~ 541 (667)
T TIGR00348 462 IFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEK 541 (667)
T ss_pred HHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccc
Confidence 00001111 11111 1235899999999999999998886542
Q ss_pred --CceeeecCCCCHH---------------------HHHHHHHHhhc-CCcEEEEEecccccCCCCCCCcEEEEecCCCC
Q psy7557 347 --RKSCSLYGDLSQE---------------------DREIALEDITS-GYARICVATDVASRGLDVPDLTHVINYDFPSH 402 (936)
Q Consensus 347 --~~~~~~h~~~~~~---------------------~R~~~~~~f~~-g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s 402 (936)
.....+++..+.. ....++++|++ +..+|||.+|.+..|+|.|.+++++...+-++
T Consensus 542 ~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~ 621 (667)
T TIGR00348 542 FEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY 621 (667)
T ss_pred cCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccccc
Confidence 3344555543322 22468889976 68899999999999999999999998877666
Q ss_pred ccccccCCCCcccC
Q psy7557 403 IEEYVHRVGRTGRA 416 (936)
Q Consensus 403 ~~~y~qr~GRagR~ 416 (936)
. .++|.+||+.|.
T Consensus 622 h-~LlQai~R~nR~ 634 (667)
T TIGR00348 622 H-GLLQAIARTNRI 634 (667)
T ss_pred c-HHHHHHHHhccc
Confidence 4 589999999994
No 226
>KOG0926|consensus
Probab=99.80 E-value=1.4e-18 Score=191.40 Aligned_cols=302 Identities=22% Similarity=0.293 Sum_probs=193.8
Q ss_pred HHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHh-ccCCCCEEEEE--
Q psy7557 107 WPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK-IDYKGLKAVCV-- 183 (936)
Q Consensus 107 i~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~-~~~~~~~~~~~-- 183 (936)
+.+|..+--+|+||.||||||. .+|-+..-.....+.. ..+..+=|.-|.|.-|.-+++++.. ++..+-.|...
T Consensus 265 MEaIn~n~vvIIcGeTGsGKTT--QvPQFLYEAGf~s~~~-~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIR 341 (1172)
T KOG0926|consen 265 MEAINENPVVIICGETGSGKTT--QVPQFLYEAGFASEQS-SSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIR 341 (1172)
T ss_pred HHHhhcCCeEEEecCCCCCccc--cchHHHHHcccCCccC-CCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEE
Confidence 3444455568899999999998 5776644433221111 2244788999999999888887765 55445555443
Q ss_pred eCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhh-c----CCCHHHHHHHHhhcCC-----
Q psy7557 184 YGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRML-D----LGFEPQINKTSIYINP----- 253 (936)
Q Consensus 184 ~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~-~----~~~~~~~~~i~~~~~~----- 253 (936)
|.|.- .....|.+.|.|.|+.-+.+. +.|.+...||+||||.=. . -|....+-.+......
T Consensus 342 fd~ti--------~e~T~IkFMTDGVLLrEi~~D-flL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~~ 412 (1172)
T KOG0926|consen 342 FDGTI--------GEDTSIKFMTDGVLLREIEND-FLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQI 412 (1172)
T ss_pred ecccc--------CCCceeEEecchHHHHHHHHh-HhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 33321 233789999999998877654 347889999999999421 1 1111222222211111
Q ss_pred -CCcEEEEEeccchHHHHHH--HHhcCC-CEEEEeCCCCcccCCceEEEEEEeCch----hhHHHHHHHHHhccCCCCcE
Q psy7557 254 -NRQTVMTSATWNKDVQRVA--KKYMVN-PVKVNVGSLDLAATHTVTQKIIILDED----EKKDWLMEFFDNMDEERDKV 325 (936)
Q Consensus 254 -~~q~~~~SAT~~~~~~~~~--~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~----~k~~~l~~~l~~~~~~~~~~ 325 (936)
...+++||||+. +.++. +.++.. |..+.+.... ..+.-++..-... +-+...+.+-+.+ +.+.+
T Consensus 413 kpLKLIIMSATLR--VsDFtenk~LFpi~pPlikVdARQ----fPVsIHF~krT~~DYi~eAfrKtc~IH~kL--P~G~I 484 (1172)
T KOG0926|consen 413 KPLKLIIMSATLR--VSDFTENKRLFPIPPPLIKVDARQ----FPVSIHFNKRTPDDYIAEAFRKTCKIHKKL--PPGGI 484 (1172)
T ss_pred CceeEEEEeeeEE--ecccccCceecCCCCceeeeeccc----CceEEEeccCCCchHHHHHHHHHHHHhhcC--CCCcE
Confidence 346899999984 33443 222222 2334333322 2233232221111 1222333333333 56889
Q ss_pred EEEeCchHHHHHHHHHhhhcC-----------------------------------------------------------
Q psy7557 326 MVFMGRKASVSAMSSDLACQY----------------------------------------------------------- 346 (936)
Q Consensus 326 iVF~~~~~~~~~l~~~L~~~~----------------------------------------------------------- 346 (936)
|||+....++..+++.|+...
T Consensus 485 LVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~ 564 (1172)
T KOG0926|consen 485 LVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASL 564 (1172)
T ss_pred EEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhh
Confidence 999999999999999887320
Q ss_pred ----------------------------------------CceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCC
Q psy7557 347 ----------------------------------------RKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGL 386 (936)
Q Consensus 347 ----------------------------------------~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gi 386 (936)
..+..+++-++.+++.++++.--.|..-++|||++++..+
T Consensus 565 raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSL 644 (1172)
T KOG0926|consen 565 RAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSL 644 (1172)
T ss_pred hhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhccc
Confidence 1122355667788888888888889999999999999999
Q ss_pred CCCCCcEEEE--------ecCCCCcccc----------ccCCCCcccCCCceeEEEEeccc
Q psy7557 387 DVPDLTHVIN--------YDFPSHIEEY----------VHRVGRTGRAGKSGESITLMTRK 429 (936)
Q Consensus 387 Dip~v~~VI~--------~d~p~s~~~y----------~qr~GRagR~g~~g~~~~~~~~~ 429 (936)
.||+|.+||. ||--.++..| -||+|||||-| .|+||-+++..
T Consensus 645 TIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 645 TIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred ccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 9999999995 5544444444 59999999997 89999999864
No 227
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.80 E-value=7.4e-19 Score=197.21 Aligned_cols=297 Identities=19% Similarity=0.240 Sum_probs=193.0
Q ss_pred CCCcHHHHHHHHHHh----cCC-cEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHH
Q psy7557 97 TTPSPIQAQAWPILM----SGH-DMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVN 171 (936)
Q Consensus 97 ~~~~~~Q~~ai~~~~----~g~-d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~ 171 (936)
..|+.+|..||..+. .|+ .+|+++.||+|||.+++- ++..+... +.-.++|+|+-+++|+.|.+..+.
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAia-ii~rL~r~------~~~KRVLFLaDR~~Lv~QA~~af~ 236 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIA-IIDRLIKS------GWVKRVLFLADRNALVDQAYGAFE 236 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHH-HHHHHHhc------chhheeeEEechHHHHHHHHHHHH
Confidence 468999999997643 554 489999999999998653 44444332 446789999999999999999999
Q ss_pred hccCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcC-----CcCCCCceEEEEccchhhhcCCCHHHHHH
Q psy7557 172 KIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRA-----SIDLKAVSFVVLDEADRMLDLGFEPQINK 246 (936)
Q Consensus 172 ~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-----~~~~~~~~~lViDEah~l~~~~~~~~~~~ 246 (936)
.+.+.+-....+.+-... ..++|.|+|-+.+...+... .+....+++||||||||- .......
T Consensus 237 ~~~P~~~~~n~i~~~~~~--------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg----i~~~~~~ 304 (875)
T COG4096 237 DFLPFGTKMNKIEDKKGD--------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG----IYSEWSS 304 (875)
T ss_pred HhCCCccceeeeecccCC--------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh----HHhhhHH
Confidence 987665555444332111 13799999999998877654 344566999999999984 3444556
Q ss_pred HHhhcCCCCcEEEEEeccchHHHHHHHHhc-CCC--------------------EEEEeCCCCcc-cCCce---------
Q psy7557 247 TSIYINPNRQTVMTSATWNKDVQRVAKKYM-VNP--------------------VKVNVGSLDLA-ATHTV--------- 295 (936)
Q Consensus 247 i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~-~~~--------------------~~i~~~~~~~~-~~~~~--------- 295 (936)
|+.++..-.| +++||+...+..-.-.|+ .+| +.+.+...... .+...
T Consensus 305 I~dYFdA~~~--gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~ 382 (875)
T COG4096 305 ILDYFDAATQ--GLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGE 382 (875)
T ss_pred HHHHHHHHHH--hhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhcc
Confidence 7777654443 449997654332222222 222 22221110000 00000
Q ss_pred -----EEEEE--------EeC--chhhHHHHHHHHHh--ccCCCCcEEEEeCchHHHHHHHHHhhhcC-----Cceeeec
Q psy7557 296 -----TQKII--------ILD--EDEKKDWLMEFFDN--MDEERDKVMVFMGRKASVSAMSSDLACQY-----RKSCSLY 353 (936)
Q Consensus 296 -----~~~~~--------~~~--~~~k~~~l~~~l~~--~~~~~~~~iVF~~~~~~~~~l~~~L~~~~-----~~~~~~h 353 (936)
.+.+. ++. ...-...+.+.+.. .....+|+||||.+..+|+.+.+.|.... .-+..+.
T Consensus 383 ~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT 462 (875)
T COG4096 383 AIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKIT 462 (875)
T ss_pred ccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEe
Confidence 00000 000 00111223333333 11225799999999999999999998653 3344566
Q ss_pred CCCCHHHHHHHHHHhhc--CCcEEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccC
Q psy7557 354 GDLSQEDREIALEDITS--GYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRA 416 (936)
Q Consensus 354 ~~~~~~~R~~~~~~f~~--g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~ 416 (936)
|+-.+.+ ..++.|.. .--+|.|+.+.+..|||+|.|.+++.+..-.|..-|.||+||+-|.
T Consensus 463 ~d~~~~q--~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 463 GDAEQAQ--ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred ccchhhH--HHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 6544332 33555554 3346888889999999999999999999999999999999999997
No 228
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.80 E-value=5.5e-18 Score=190.29 Aligned_cols=297 Identities=19% Similarity=0.232 Sum_probs=190.3
Q ss_pred CCCcHHHHHHHHhhh----cC-CcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHH
Q psy7557 617 TTPSPIQAQAWPILM----SG-HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVN 691 (936)
Q Consensus 617 ~~p~~iQ~~ai~~~l----~g-~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~ 691 (936)
..|+.+|..||..+. +| +-+++++.||+|||..+.- ++..+... +.-+++|+|+-+++|+.|.+..+.
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAia-ii~rL~r~------~~~KRVLFLaDR~~Lv~QA~~af~ 236 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIA-IIDRLIKS------GWVKRVLFLADRNALVDQAYGAFE 236 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHH-HHHHHHhc------chhheeeEEechHHHHHHHHHHHH
Confidence 468999999997765 44 3599999999999987653 33333321 456799999999999999999999
Q ss_pred hccCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcC-----CCCCCCceEEEEcccchhccCCCHHHHHH
Q psy7557 692 KIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRA-----SIDLKAVSFVVLDEADRMLDLGFEPQINK 766 (936)
Q Consensus 692 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~-----~~~~~~i~~lViDEah~l~~~~~~~~~~~ 766 (936)
.+.+.+-....+.+.... ..++|.|+|...+...+... .+....+++|||||||+=. ......
T Consensus 237 ~~~P~~~~~n~i~~~~~~--------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----~~~~~~ 304 (875)
T COG4096 237 DFLPFGTKMNKIEDKKGD--------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----YSEWSS 304 (875)
T ss_pred HhCCCccceeeeecccCC--------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----HhhhHH
Confidence 986655555444432211 14799999999998877654 3445679999999999843 333334
Q ss_pred HhhhcCCCceEEEEEecCChHHHHHHHHhc-CCCeE--------------------EEeCC--CCcccCC----------
Q psy7557 767 TSIYINPNRQTVMTSATWNKDVQRVAKKYM-VNPVK--------------------VNVGS--LDLAATH---------- 813 (936)
Q Consensus 767 i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~-~~~~~--------------------i~~~~--~~~~~~~---------- 813 (936)
|+.++..- +++++||+......-.-.++ ..|+. +.+.. .......
T Consensus 305 I~dYFdA~--~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~ 382 (875)
T COG4096 305 ILDYFDAA--TQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGE 382 (875)
T ss_pred HHHHHHHH--HHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhcc
Confidence 54444322 24559997654332222222 22221 11110 0000000
Q ss_pred ce---EEEEEEcC------cchhHH----HHHHHHHh--ccCCCCcEEEEcCChHHHHHHHHHHHhcCC-----ceEEEe
Q psy7557 814 TV---TQKIIILD------EDEKKD----WLMEFFDN--MDEERDKVMVFMGRKASVSAMSSDLACQYR-----KSCSLY 873 (936)
Q Consensus 814 ~~---~~~~~~~~------~~~k~~----~l~~~l~~--~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~-----~~~~~h 873 (936)
.+ .+.+...+ ...... .+.+.+.. .....+++||||.+..+|+.+...|...+. -+..+.
T Consensus 383 ~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT 462 (875)
T COG4096 383 AIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKIT 462 (875)
T ss_pred ccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEe
Confidence 00 00000000 011112 23333333 112257999999999999999999986542 345566
Q ss_pred CCCCHHHHHHHHHHhhc--CCCcEEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 874 GDLSQEDREIALEDITS--GYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 874 ~~l~~~~R~~~~~~F~~--g~~~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
|+-.+. ...++.|.. .--+|.|+.+.+..|||+|.|-++|.+..-.|...|.||+||+-|.
T Consensus 463 ~d~~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 463 GDAEQA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred ccchhh--HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 664433 233555554 3347889999999999999999999999999999999999999884
No 229
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.80 E-value=1e-17 Score=204.82 Aligned_cols=305 Identities=18% Similarity=0.209 Sum_probs=186.2
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHHHHH----hhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEec
Q psy7557 603 HYPEILRQLENLSFTTPSPIQAQAWP----ILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAP 678 (936)
Q Consensus 603 l~~~~~~~l~~~g~~~p~~iQ~~ai~----~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~P 678 (936)
+.+...+.+...|| +++|.|.+.+. .+..|+++++.||||+|||++|++|++.+.. .+.+++|.+|
T Consensus 231 ~~~~~~~~~~~~~~-~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~---------~~~~vvi~t~ 300 (850)
T TIGR01407 231 LSSLFSKNIDRLGL-EYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI---------TEKPVVISTN 300 (850)
T ss_pred ccHHHHHhhhhcCC-ccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc---------CCCeEEEEeC
Confidence 33456778888999 58999998766 4447889999999999999999999987652 2458999999
Q ss_pred CHHHHHHHHH-HHHhc---cCCCCEEEEEECCccch---------------HH---------------------------
Q psy7557 679 TRELATQIER-EVNKI---DYKGLKAVCVYGGKELE---------------PQ--------------------------- 712 (936)
Q Consensus 679 t~~La~Q~~~-~~~~~---~~~~~~~~~~~gg~~~~---------------~~--------------------------- 712 (936)
|++|..|+.. .+..+ ....++++.+.|+...- ..
T Consensus 301 t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~ 380 (850)
T TIGR01407 301 TKVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKG 380 (850)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCC
Confidence 9999999855 34433 22346666666654210 00
Q ss_pred -----H------------------------HHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCC----
Q psy7557 713 -----L------------------------EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLG---- 759 (936)
Q Consensus 713 -----~------------------------~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~---- 759 (936)
+ ......++|||+.-.-+.+-+......+....++||||||++.+..
T Consensus 381 ~~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~ 460 (850)
T TIGR01407 381 GNKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQL 460 (850)
T ss_pred cchhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHh
Confidence 0 0001236888888776665543332234556799999999875310
Q ss_pred ---C-----HHH-------------------------------------------------------------HHHH---
Q psy7557 760 ---F-----EPQ-------------------------------------------------------------INKT--- 767 (936)
Q Consensus 760 ---~-----~~~-------------------------------------------------------------~~~i--- 767 (936)
+ ... ...+
T Consensus 461 ~~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~ 540 (850)
T TIGR01407 461 QEELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKF 540 (850)
T ss_pred cceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 0 000 0000
Q ss_pred hhh---------------------c---------------------------CCCceEEEEEecCCh--HHHHHHHHhcC
Q psy7557 768 SIY---------------------I---------------------------NPNRQTVMTSATWNK--DVQRVAKKYMV 797 (936)
Q Consensus 768 ~~~---------------------~---------------------------~~~~q~v~~SAT~~~--~~~~~~~~~~~ 797 (936)
... . +....+|++|||++. ....+.+.+..
T Consensus 541 ~~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl 620 (850)
T TIGR01407 541 DLALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGL 620 (850)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCC
Confidence 000 0 012368899999963 23444444443
Q ss_pred CCeE-EEeCCCCcccCCceEEEEEEcC---------cchhHHHHHHHHHhc-cCCCCcEEEEcCChHHHHHHHHHHHhcC
Q psy7557 798 NPVK-VNVGSLDLAATHTVTQKIIILD---------EDEKKDWLMEFFDNM-DEERDKVMVFMGRKASVSAMSSDLACQY 866 (936)
Q Consensus 798 ~~~~-i~~~~~~~~~~~~~~~~~~~~~---------~~~k~~~l~~~l~~~-~~~~~~~iIF~~s~~~~~~l~~~L~~~~ 866 (936)
+... ....+....... ...+++.. ...-...+...+... ....+++|||++|....+.++..|....
T Consensus 621 ~~~~~~~~~~spf~~~~--~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~ 698 (850)
T TIGR01407 621 TDVHFNTIEPTPLNYAE--NQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELP 698 (850)
T ss_pred CccccceecCCCCCHHH--cCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhc
Confidence 3211 111111111001 11111111 111122233333222 2245789999999999999999987521
Q ss_pred --CceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCE--EEEccCC
Q psy7557 867 --RKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTH--VINYDFP 920 (936)
Q Consensus 867 --~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~--VI~~d~p 920 (936)
.+...+..+.. ..|..+++.|++|+..||+||+.+++|||+|+..+ ||...+|
T Consensus 699 ~~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LP 755 (850)
T TIGR01407 699 EFEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLP 755 (850)
T ss_pred cccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCC
Confidence 12333444443 57899999999999999999999999999999774 6666666
No 230
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.80 E-value=6.5e-18 Score=199.82 Aligned_cols=300 Identities=15% Similarity=0.123 Sum_probs=178.2
Q ss_pred CCcHHHHHHHHhhh----c------CCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHH
Q psy7557 618 TPSPIQAQAWPILM----S------GHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIE 687 (936)
Q Consensus 618 ~p~~iQ~~ai~~~l----~------g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~ 687 (936)
.|+++|..|+..+. + .+..+++.+||||||++.+..+.... . ....+++|||+|+.+|..|+.
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~------~~~~~~vl~lvdR~~L~~Q~~ 310 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-E------LLKNPKVFFVVDRRELDYQLM 310 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-h------hcCCCeEEEEECcHHHHHHHH
Confidence 37889999988764 2 25799999999999988765443322 1 134689999999999999999
Q ss_pred HHHHhccCCCCEEEEEECCccchHHHHHHhc-CceEEEeCchHHHHHHHcC--CCCCCCc-eEEEEcccchhccCCCHHH
Q psy7557 688 REVNKIDYKGLKAVCVYGGKELEPQLEKIRE-GCHILIATPGRLNDFVSRA--SIDLKAV-SFVVLDEADRMLDLGFEPQ 763 (936)
Q Consensus 688 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~IiV~Tp~~l~~~l~~~--~~~~~~i-~~lViDEah~l~~~~~~~~ 763 (936)
+.+..+..... .+..+.......+.. ...|+|+|.+++...+... .....+- -+||+||||+.....+...
T Consensus 311 ~~f~~~~~~~~-----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~~~ 385 (667)
T TIGR00348 311 KEFQSLQKDCA-----ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELAKN 385 (667)
T ss_pred HHHHhhCCCCC-----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHHHH
Confidence 99999753211 111122222233332 3689999999997644332 1111111 2899999998654333322
Q ss_pred HHHHhhhcCCCceEEEEEecCChHHHH-HHHHhc---CCCeEEEeCCCCcccCCceEEE-EE------EcC---------
Q psy7557 764 INKTSIYINPNRQTVMTSATWNKDVQR-VAKKYM---VNPVKVNVGSLDLAATHTVTQK-II------ILD--------- 823 (936)
Q Consensus 764 ~~~i~~~~~~~~q~v~~SAT~~~~~~~-~~~~~~---~~~~~i~~~~~~~~~~~~~~~~-~~------~~~--------- 823 (936)
+. ..+ ++...++||||+-..... -...+. .+++ ......+....+..... +. ..+
T Consensus 386 l~---~~~-p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i-~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~ 460 (667)
T TIGR00348 386 LK---KAL-KNASFFGFTGTPIFKKDRDTSLTFAYVFGRYL-HRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFD 460 (667)
T ss_pred HH---hhC-CCCcEEEEeCCCcccccccccccccCCCCCeE-EEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHH
Confidence 22 233 567899999997432111 011111 1111 11111000000000000 00 000
Q ss_pred -----------c-------------------chhHHHHHH-HHHh---c-cCCCCcEEEEcCChHHHHHHHHHHHhcC--
Q psy7557 824 -----------E-------------------DEKKDWLME-FFDN---M-DEERDKVMVFMGRKASVSAMSSDLACQY-- 866 (936)
Q Consensus 824 -----------~-------------------~~k~~~l~~-~l~~---~-~~~~~~~iIF~~s~~~~~~l~~~L~~~~-- 866 (936)
. ......+.. ++.. . .....+++|||.++..|..++..|....
T Consensus 461 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~ 540 (667)
T TIGR00348 461 EIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNE 540 (667)
T ss_pred HHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhccc
Confidence 0 000011111 1111 1 1234789999999999999999886652
Q ss_pred ---CceEEEeCCCCHH---------------------HHHHHHHHhhc-CCCcEEEecccCccCCCCCCCCEEEEccCCC
Q psy7557 867 ---RKSCSLYGDLSQE---------------------DREIALEDITS-GYARICVATDVASRGLDVPDLTHVINYDFPS 921 (936)
Q Consensus 867 ---~~~~~~h~~l~~~---------------------~R~~~~~~F~~-g~~~vLVaT~~~~~Gidip~v~~VI~~d~p~ 921 (936)
.....+++..+.. ....++++|++ +..+|||.++.+..|+|.|.+++++...+-.
T Consensus 541 ~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk 620 (667)
T TIGR00348 541 KFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLK 620 (667)
T ss_pred ccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecccc
Confidence 2334455443222 22468889976 6889999999999999999999988777656
Q ss_pred ChhhhHhhhhhccC
Q psy7557 922 HIEEYVHRVGRTGE 935 (936)
Q Consensus 922 s~~~yiqr~GRaGR 935 (936)
+ ..++|.+||+-|
T Consensus 621 ~-h~LlQai~R~nR 633 (667)
T TIGR00348 621 Y-HGLLQAIARTNR 633 (667)
T ss_pred c-cHHHHHHHHhcc
Confidence 5 468999999998
No 231
>KOG4150|consensus
Probab=99.79 E-value=2e-18 Score=183.09 Aligned_cols=330 Identities=13% Similarity=0.053 Sum_probs=229.8
Q ss_pred HHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHH
Q psy7557 89 RQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIER 168 (936)
Q Consensus 89 ~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~ 168 (936)
+.+.++.-.....+|..++..+..|+++++.-.|.+||+++|.+.+...... ......+++.||+++++...+
T Consensus 277 ~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~-------~~~s~~~~~~~~~~~~~~~~~ 349 (1034)
T KOG4150|consen 277 SLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTL-------CHATNSLLPSEMVEHLRNGSK 349 (1034)
T ss_pred HHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhc-------CcccceecchhHHHHhhccCC
Confidence 3444555567789999999999999999999999999999999877655433 223457899999999876544
Q ss_pred HHHhc----cCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcC----CCCceEEEEccchhhhcC--
Q psy7557 169 EVNKI----DYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASID----LKAVSFVVLDEADRMLDL-- 238 (936)
Q Consensus 169 ~~~~~----~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~----~~~~~~lViDEah~l~~~-- 238 (936)
.+.-. ....--++..+.|........-.+.+.+++++.|........-+... +-...+++.||+|.....
T Consensus 350 ~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~ 429 (1034)
T KOG4150|consen 350 GQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTK 429 (1034)
T ss_pred ceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchh
Confidence 33221 11111223344454444444556677999999998886655433322 345678999999976432
Q ss_pred -CCHHHHHHHHhhc-----CCCCcEEEEEeccchHHHHHHHHhcCCCEEE-EeCCCCcccCCceEEEEEEeCc-------
Q psy7557 239 -GFEPQINKTSIYI-----NPNRQTVMTSATWNKDVQRVAKKYMVNPVKV-NVGSLDLAATHTVTQKIIILDE------- 304 (936)
Q Consensus 239 -~~~~~~~~i~~~~-----~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~------- 304 (936)
....+++++...+ ..+.|++-.|||+...++-....+..+.+.. .++.. +..-+..++.-+.
T Consensus 430 ~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGS----Ps~~K~~V~WNP~~~P~~~~ 505 (1034)
T KOG4150|consen 430 ALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGS----PSSEKLFVLWNPSAPPTSKS 505 (1034)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCC----CCccceEEEeCCCCCCcchh
Confidence 1223444444332 3578999999999888776666555444333 22221 1222222222111
Q ss_pred --hhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCC--------ceeeecCCCCHHHHHHHHHHhhcCCcE
Q psy7557 305 --DEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYR--------KSCSLYGDLSQEDREIALEDITSGYAR 374 (936)
Q Consensus 305 --~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~--------~~~~~h~~~~~~~R~~~~~~f~~g~~~ 374 (936)
..+......++.++...+-++|-||.+++.|+-+-...+.... .+..+.||...++|.+++.+.-.|+..
T Consensus 506 ~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~ 585 (1034)
T KOG4150|consen 506 EKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLC 585 (1034)
T ss_pred hhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeee
Confidence 2233334444444445578999999999988876655443221 245688999999999999999999999
Q ss_pred EEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEeccc
Q psy7557 375 ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRK 429 (936)
Q Consensus 375 vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~ 429 (936)
-+|||++++-||||...+.|++.++|.|+..+.|..|||||..++..++.+....
T Consensus 586 giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~ 640 (1034)
T KOG4150|consen 586 GIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLG 640 (1034)
T ss_pred EEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEecc
Confidence 9999999999999999999999999999999999999999999998888776543
No 232
>KOG0920|consensus
Probab=99.79 E-value=7.6e-18 Score=195.53 Aligned_cols=316 Identities=17% Similarity=0.238 Sum_probs=217.9
Q ss_pred cHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhc--cCCC
Q psy7557 100 SPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI--DYKG 177 (936)
Q Consensus 100 ~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~--~~~~ 177 (936)
...+.+.+.++.+.+.++++|.||+|||.-.---++...... +....+++--|.|--|..+++++..- ...|
T Consensus 175 ~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~------~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g 248 (924)
T KOG0920|consen 175 YKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIES------GAACNIICTQPRRISAISVAERVAKERGESLG 248 (924)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhc------CCCCeEEecCCchHHHHHHHHHHHHHhccccC
Confidence 556667777788888899999999999984222233332221 24567999999999998888888662 2234
Q ss_pred CEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchh-hhcCCCHHHHHHHHhhcCCCCc
Q psy7557 178 LKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADR-MLDLGFEPQINKTSIYINPNRQ 256 (936)
Q Consensus 178 ~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~-l~~~~~~~~~~~i~~~~~~~~q 256 (936)
-.|+.-.+..... .....++++|.|.|++.+.. ...+..+..+|+||+|. =.+.+|.-.+.+.+-..+++.+
T Consensus 249 ~~VGYqvrl~~~~------s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~Lk 321 (924)
T KOG0920|consen 249 EEVGYQVRLESKR------SRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLK 321 (924)
T ss_pred CeeeEEEeeeccc------CCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCce
Confidence 4444433332211 12378999999999998877 44588999999999994 3455566666666666678999
Q ss_pred EEEEEeccchHHHHHHHHhcCCCEEEEeCCCCccc---------------CCceEEE------------EEEeCchhhHH
Q psy7557 257 TVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAA---------------THTVTQK------------IIILDEDEKKD 309 (936)
Q Consensus 257 ~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------------~~~~~~~------------~~~~~~~~k~~ 309 (936)
+++||||+. .+.+...|. ....+.+....... .....+. ......+...+
T Consensus 322 vILMSAT~d--ae~fs~YF~-~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~ 398 (924)
T KOG0920|consen 322 VILMSATLD--AELFSDYFG-GCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYD 398 (924)
T ss_pred EEEeeeecc--hHHHHHHhC-CCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHH
Confidence 999999986 333444444 43333333211100 0000000 01111112233
Q ss_pred HHHHHHHhc--cCCCCcEEEEeCchHHHHHHHHHhhhc-------CCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEec
Q psy7557 310 WLMEFFDNM--DEERDKVMVFMGRKASVSAMSSDLACQ-------YRKSCSLYGDLSQEDREIALEDITSGYARICVATD 380 (936)
Q Consensus 310 ~l~~~l~~~--~~~~~~~iVF~~~~~~~~~l~~~L~~~-------~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~ 380 (936)
.+.+++... ....+.+|||.+...+...+.+.|... .+-+..+|+.|+..++..+...--.|..+|++||+
T Consensus 399 Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTN 478 (924)
T KOG0920|consen 399 LIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATN 478 (924)
T ss_pred HHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhh
Confidence 333333332 145789999999999999999999752 13456799999999999999999999999999999
Q ss_pred ccccCCCCCCCcEEEE--------ecCCC----------CccccccCCCCcccCCCceeEEEEecccChh
Q psy7557 381 VASRGLDVPDLTHVIN--------YDFPS----------HIEEYVHRVGRTGRAGKSGESITLMTRKDWS 432 (936)
Q Consensus 381 ~~~~GiDip~v~~VI~--------~d~p~----------s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~ 432 (936)
+++..|-|++|-+||. ||+-. |...-.||.|||||. ..|.|+.+++...+.
T Consensus 479 IAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~~ 547 (924)
T KOG0920|consen 479 IAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRYE 547 (924)
T ss_pred hHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhhh
Confidence 9999999999999994 55543 445567999999999 689999999976543
No 233
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.79 E-value=4.6e-18 Score=173.05 Aligned_cols=187 Identities=41% Similarity=0.614 Sum_probs=154.8
Q ss_pred hCCCCCCcHHHHHHHHHHhcC-CcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHH
Q psy7557 93 NLSFTTPSPIQAQAWPILMSG-HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVN 171 (936)
Q Consensus 93 ~~g~~~~~~~Q~~ai~~~~~g-~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~ 171 (936)
..++.+|+++|.++++.+..+ +++++++|||+|||.+++.+++..+.. ....+++|++|++.++.|+.+.+.
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~-------~~~~~~l~~~p~~~~~~~~~~~~~ 75 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKR-------GKGKRVLVLVPTRELAEQWAEELK 75 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcc-------cCCCcEEEEeCCHHHHHHHHHHHH
Confidence 356789999999999999988 999999999999999988888876643 224679999999999999999998
Q ss_pred hccCC-CCEEEEEeCCccchHHHHHhhcCC-cEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHHHh
Q psy7557 172 KIDYK-GLKAVCVYGGKEIEPQLEKIREGC-HILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSI 249 (936)
Q Consensus 172 ~~~~~-~~~~~~~~gg~~~~~~~~~~~~~~-~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~ 249 (936)
.+... ........++......+.....+. +++++|++.+.+.+........+++++|+||||.+....+...+..+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~ 155 (201)
T smart00487 76 KLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLK 155 (201)
T ss_pred HHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHH
Confidence 86432 224555666666566666666666 9999999999998888777788899999999999987678888888888
Q ss_pred hcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCC
Q psy7557 250 YINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGS 286 (936)
Q Consensus 250 ~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~ 286 (936)
.+++..+++++|||+++........++.+.+.+....
T Consensus 156 ~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 156 LLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred hCCccceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 8888899999999999999999988888777766554
No 234
>KOG0922|consensus
Probab=99.79 E-value=1.6e-17 Score=182.51 Aligned_cols=289 Identities=18% Similarity=0.264 Sum_probs=191.0
Q ss_pred HHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc--cCCCCEEE
Q psy7557 624 AQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI--DYKGLKAV 701 (936)
Q Consensus 624 ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~--~~~~~~~~ 701 (936)
.+.+..+-+++-++++++||||||. .+|-+..-.. + ....++.+.-|.|--|.-+++++..- +..|-.++
T Consensus 57 ~~il~~ve~nqvlIviGeTGsGKST--QipQyL~eaG----~--~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VG 128 (674)
T KOG0922|consen 57 DQILYAVEDNQVLIVIGETGSGKST--QIPQYLAEAG----F--ASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVG 128 (674)
T ss_pred HHHHHHHHHCCEEEEEcCCCCCccc--cHhHHHHhcc----c--ccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceee
Confidence 3445555567789999999999997 6664432211 1 12334889999998888888777652 23344443
Q ss_pred EEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchh-ccCC-CHHHHHHHhhhcCCCceEEE
Q psy7557 702 CVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRM-LDLG-FEPQINKTSIYINPNRQTVM 779 (936)
Q Consensus 702 ~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l-~~~~-~~~~~~~i~~~~~~~~q~v~ 779 (936)
...--.+.. .....|.+.|-|.|++-+...+ .+++.++||+||||.= +..+ ....+.++.. .+++.++++
T Consensus 129 Y~IRFed~t------s~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl~TDiLlGlLKki~~-~R~~LklIi 200 (674)
T KOG0922|consen 129 YTIRFEDST------SKDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSLHTDILLGLLKKILK-KRPDLKLII 200 (674)
T ss_pred eEEEecccC------CCceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhhHHHHHHHHHHHHHh-cCCCceEEE
Confidence 332211111 1125899999999988776655 3889999999999941 1111 1122333322 346789999
Q ss_pred EEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcch-hHHHHHHHHHh-ccCCCCcEEEEcCChHHHHH
Q psy7557 780 TSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDE-KKDWLMEFFDN-MDEERDKVMVFMGRKASVSA 857 (936)
Q Consensus 780 ~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-k~~~l~~~l~~-~~~~~~~~iIF~~s~~~~~~ 857 (936)
+|||+. ...+...|...|+.. +..... .+...+...+..+ -...+.-.++- ..++.+-+|||....++.+.
T Consensus 201 mSATld--a~kfS~yF~~a~i~~-i~GR~f----PVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~ 273 (674)
T KOG0922|consen 201 MSATLD--AEKFSEYFNNAPILT-IPGRTF----PVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEA 273 (674)
T ss_pred Eeeeec--HHHHHHHhcCCceEe-ecCCCC----ceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHH
Confidence 999984 555655555555543 333222 2222222211111 11112222221 12556789999999999999
Q ss_pred HHHHHHhcCC--------ceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEEccC----------
Q psy7557 858 MSSDLACQYR--------KSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDF---------- 919 (936)
Q Consensus 858 l~~~L~~~~~--------~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~---------- 919 (936)
.++.|.+... -+..+||.|+.+++.++++.-..|..+|++||++++..+.||++..||.-++
T Consensus 274 ~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~ 353 (674)
T KOG0922|consen 274 ACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRT 353 (674)
T ss_pred HHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeecccc
Confidence 9998876421 1356999999999999999999999999999999999999999999997443
Q ss_pred --------CCChhhhHhhhhhccC
Q psy7557 920 --------PSHIEEYVHRVGRTGE 935 (936)
Q Consensus 920 --------p~s~~~yiqr~GRaGR 935 (936)
|-|..+-.||.|||||
T Consensus 354 g~~~L~v~~ISkasA~QRaGRAGR 377 (674)
T KOG0922|consen 354 GLDSLIVVPISKASANQRAGRAGR 377 (674)
T ss_pred CccceeEEechHHHHhhhcccCCC
Confidence 5678888999999999
No 235
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.79 E-value=5.8e-18 Score=172.29 Aligned_cols=187 Identities=41% Similarity=0.614 Sum_probs=154.7
Q ss_pred hCCCCCCcHHHHHHHHhhhcC-CcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHH
Q psy7557 613 NLSFTTPSPIQAQAWPILMSG-HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVN 691 (936)
Q Consensus 613 ~~g~~~p~~iQ~~ai~~~l~g-~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~ 691 (936)
..++..|+++|.++++.+..+ +++++.+|||+|||.++..+++..... ....+++|++|++.++.|+.+.+.
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~-------~~~~~~l~~~p~~~~~~~~~~~~~ 75 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKR-------GKGKRVLVLVPTRELAEQWAEELK 75 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcc-------cCCCcEEEEeCCHHHHHHHHHHHH
Confidence 356789999999999999998 999999999999999988888876643 224689999999999999999998
Q ss_pred hccCC-CCEEEEEECCccchHHHHHHhcCc-eEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHHHhh
Q psy7557 692 KIDYK-GLKAVCVYGGKELEPQLEKIREGC-HILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSI 769 (936)
Q Consensus 692 ~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~-~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~ 769 (936)
.+... ........++.........+..+. +++++|++.+.+.+........+++++|+||||.+....+...+..+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~ 155 (201)
T smart00487 76 KLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLK 155 (201)
T ss_pred HHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHH
Confidence 86433 225556666666555666666666 9999999999999988777788899999999999887678888888888
Q ss_pred hcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCC
Q psy7557 770 YINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGS 806 (936)
Q Consensus 770 ~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~ 806 (936)
.+++..+++++|||++.........+..+.+.+....
T Consensus 156 ~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 156 LLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred hCCccceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 8888899999999999999998888888777666543
No 236
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.79 E-value=6.4e-18 Score=194.52 Aligned_cols=300 Identities=20% Similarity=0.213 Sum_probs=196.0
Q ss_pred CCCcHHHHHHHHhhhcC----CcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHh
Q psy7557 617 TTPSPIQAQAWPILMSG----HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK 692 (936)
Q Consensus 617 ~~p~~iQ~~ai~~~l~g----~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 692 (936)
..+++-|..|...+.+. ...++.+.||||||.+|+=.+-..+ ..|..+|+|+|-.+|..|+.++++.
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L---------~~GkqvLvLVPEI~Ltpq~~~rf~~ 267 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVL---------AQGKQVLVLVPEIALTPQLLARFKA 267 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHH---------HcCCEEEEEeccccchHHHHHHHHH
Confidence 36789999999998755 6799999999999999886554444 4578999999999999999999988
Q ss_pred ccCCCCEEEEEECCccchHHHHH---Hhc-CceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhc---cCCCHHHHH
Q psy7557 693 IDYKGLKAVCVYGGKELEPQLEK---IRE-GCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRML---DLGFEPQIN 765 (936)
Q Consensus 693 ~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~---~~~~~~~~~ 765 (936)
. .+.++..++++.+....... ... .+.|||||-..+ ...|+++++||+||-|--. +.+.+...+
T Consensus 268 r--Fg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhAR 338 (730)
T COG1198 268 R--FGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHAR 338 (730)
T ss_pred H--hCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccCCcCCCcCHH
Confidence 4 34778888888766554433 333 379999996544 4568999999999999533 122222222
Q ss_pred HH--hhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhH-----HHHHHHHHhc
Q psy7557 766 KT--SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKK-----DWLMEFFDNM 838 (936)
Q Consensus 766 ~i--~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~-----~~l~~~l~~~ 838 (936)
.+ ...-..++++|+-|||.+- +....-.-.....+............-.+.+.+.....+. ..|++.++..
T Consensus 339 dvA~~Ra~~~~~pvvLgSATPSL--ES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~ 416 (730)
T COG1198 339 DVAVLRAKKENAPVVLGSATPSL--ESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKT 416 (730)
T ss_pred HHHHHHHHHhCCCEEEecCCCCH--HHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHH
Confidence 22 2222357899999999754 4333322111222222221111111111222222222222 4566677666
Q ss_pred cCCCCcEEEEcCChHHHH------------------------------------------------------------HH
Q psy7557 839 DEERDKVMVFMGRKASVS------------------------------------------------------------AM 858 (936)
Q Consensus 839 ~~~~~~~iIF~~s~~~~~------------------------------------------------------------~l 858 (936)
...+.++|+|.|++.-+- .+
T Consensus 417 l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gteri 496 (730)
T COG1198 417 LERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERI 496 (730)
T ss_pred HhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHH
Confidence 678889999999876442 22
Q ss_pred HHHHHhcC--CceEEEeCCCCH--HHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEEcc--CC----------CC
Q psy7557 859 SSDLACQY--RKSCSLYGDLSQ--EDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYD--FP----------SH 922 (936)
Q Consensus 859 ~~~L~~~~--~~~~~~h~~l~~--~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d--~p----------~s 922 (936)
.+.|.... ..+..+.++.+. ..-+..++.|.+|+.+|||.|..++.|.|+|++++|...| .- ..
T Consensus 497 eeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~ 576 (730)
T COG1198 497 EEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERT 576 (730)
T ss_pred HHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHH
Confidence 22222221 233344444443 2346778999999999999999999999999999976433 22 23
Q ss_pred hhhhHhhhhhccCC
Q psy7557 923 IEEYVHRVGRTGEF 936 (936)
Q Consensus 923 ~~~yiqr~GRaGR~ 936 (936)
...+.|-.|||||+
T Consensus 577 fqll~QvaGRAgR~ 590 (730)
T COG1198 577 FQLLMQVAGRAGRA 590 (730)
T ss_pred HHHHHHHHhhhccC
Confidence 44578999999995
No 237
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.77 E-value=6.6e-17 Score=190.51 Aligned_cols=112 Identities=19% Similarity=0.216 Sum_probs=102.2
Q ss_pred chhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCcc
Q psy7557 825 DEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASR 904 (936)
Q Consensus 825 ~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~ 904 (936)
..+...+...+......+.++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|++.|||||+++++
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~r 508 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLRE 508 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhC
Confidence 34456666666666566789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEccC-----CCChhhhHhhhhhccCC
Q psy7557 905 GLDVPDLTHVINYDF-----PSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 905 Gidip~v~~VI~~d~-----p~s~~~yiqr~GRaGR~ 936 (936)
|+|+|++++||++|. |.+..+|+||+|||||+
T Consensus 509 Gfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~ 545 (652)
T PRK05298 509 GLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 (652)
T ss_pred CccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC
Confidence 999999999999885 78999999999999995
No 238
>KOG4150|consensus
Probab=99.77 E-value=9.4e-18 Score=177.99 Aligned_cols=334 Identities=14% Similarity=0.072 Sum_probs=228.4
Q ss_pred CCCCcCChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCC
Q psy7557 590 IPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERA 669 (936)
Q Consensus 590 ~p~~~~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~ 669 (936)
+|..-.+|... ....+.+.+.++.-.....+|.+++..+-.|+++++.-.|.+||+++|.+........ ..
T Consensus 260 ~~~R~A~~K~~--~~E~~~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~-------~~ 330 (1034)
T KOG4150|consen 260 MKKREASFKSD--FWESIRSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTL-------CH 330 (1034)
T ss_pred ccchhhhhhhh--HHHHHHHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhc-------Cc
Confidence 34444455432 1122344556666778899999999999999999999999999999999887655443 23
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhc----cCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcC----CCCC
Q psy7557 670 GPSVLVMAPTRELATQIEREVNKI----DYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRA----SIDL 741 (936)
Q Consensus 670 ~~~~lil~Pt~~La~Q~~~~~~~~----~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~----~~~~ 741 (936)
...-+++.|++++++...+.+.-. ....-.++..+.|..........+.+..++++.|........-+ ...+
T Consensus 331 ~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~ 410 (1034)
T KOG4150|consen 331 ATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPV 410 (1034)
T ss_pred ccceecchhHHHHhhccCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHH
Confidence 445789999999987543332211 11112234445565555565667778999999998876644332 2334
Q ss_pred CCceEEEEcccchhccC---CCHHHHHHHhhhc-----CCCceEEEEEecCChHHHHHHHHhcCCCeEE-EeCCCCcccC
Q psy7557 742 KAVSFVVLDEADRMLDL---GFEPQINKTSIYI-----NPNRQTVMTSATWNKDVQRVAKKYMVNPVKV-NVGSLDLAAT 812 (936)
Q Consensus 742 ~~i~~lViDEah~l~~~---~~~~~~~~i~~~~-----~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~ 812 (936)
-...+++.||+|.+... ....+++.+...+ +.+.|++-.|||+...++.....+..+.+.+ .....+.
T Consensus 411 ~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs--- 487 (1034)
T KOG4150|consen 411 FEELCKDTNSCALYLFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPS--- 487 (1034)
T ss_pred HHHHHhcccceeeeecchhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCC---
Confidence 45678999999976532 1233444444443 4678999999999877766655555454433 2222211
Q ss_pred CceEEEEEEcCc------chhHHH---HHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCC--------ceEEEeCC
Q psy7557 813 HTVTQKIIILDE------DEKKDW---LMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYR--------KSCSLYGD 875 (936)
Q Consensus 813 ~~~~~~~~~~~~------~~k~~~---l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~--------~~~~~h~~ 875 (936)
.-++.+...+. ..+.+. ...++..+-..+-++|.||.+++.|+.+...-+.... .+..+.||
T Consensus 488 -~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGG 566 (1034)
T KOG4150|consen 488 -SEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGG 566 (1034)
T ss_pred -ccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCc
Confidence 12223332221 122222 2333333334567899999999999877665443221 34568899
Q ss_pred CCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 876 LSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 876 l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
...++|++++..+--|+..-+|||++++-|||+...+.|++.++|.|+..+.|..|||||-
T Consensus 567 Y~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRR 627 (1034)
T KOG4150|consen 567 YIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRR 627 (1034)
T ss_pred cchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999993
No 239
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=5.4e-17 Score=185.53 Aligned_cols=376 Identities=19% Similarity=0.224 Sum_probs=242.0
Q ss_pred ccCCccccccCcCCccccCCCHHHHHHHHhhCCCceEEeecCCCccCCCCCCCCCCcccChHHhhcCCHHHHHHH-HhCC
Q psy7557 17 AREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQL-ENLS 95 (936)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~f~~~~~~~~~l~~~l-~~~g 95 (936)
.++.++.+.+..-.+.+..+++++......++..- +. .|. .. . ....++|.+ +.++. ..+|
T Consensus 15 k~~~~~v~~In~le~~~~~LsD~eL~~kt~~fk~r-l~----~g~-------~l-d--~~l~eafAv---vREA~~R~lG 76 (925)
T PRK12903 15 RIAEKILKQINDLEPYYRNLTDEELANKTNEFKDR-LK----NGE-------TL-E--DIRVEAFAV---AREATKRVLG 76 (925)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hh----cCC-------Ch-H--HHHHHHHHH---HHHHHHHHhC
Confidence 34445555666667889999998876443322100 00 110 00 0 001122211 22222 2356
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHh-cc
Q psy7557 96 FTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK-ID 174 (936)
Q Consensus 96 ~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~-~~ 174 (936)
. .|+++|.-+--.+..|+ |+.+.||-|||+++.+|++...+ .|..|=|++..--||.-=.+.+.. |.
T Consensus 77 ~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL---------~GkgVhVVTvNdYLA~RDae~mg~vy~ 144 (925)
T PRK12903 77 K-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNAL---------TGKGVIVSTVNEYLAERDAEEMGKVFN 144 (925)
T ss_pred C-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHh---------cCCceEEEecchhhhhhhHHHHHHHHH
Confidence 6 89999998887777775 89999999999999999986653 356678888889999877777776 46
Q ss_pred CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchh-HHHHHcCC------cCCCCceEEEEccchhhh-cCC-------
Q psy7557 175 YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRL-NDFVSRAS------IDLKAVSFVVLDEADRML-DLG------- 239 (936)
Q Consensus 175 ~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~------~~~~~~~~lViDEah~l~-~~~------- 239 (936)
..|++++++..+.+...... .-.|||+++|..-| .|.|..+. .....+.+.|+||+|.++ |..
T Consensus 145 fLGLsvG~i~~~~~~~~rr~--aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIIS 222 (925)
T PRK12903 145 FLGLSVGINKANMDPNLKRE--AYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIIS 222 (925)
T ss_pred HhCCceeeeCCCCChHHHHH--hccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCccccc
Confidence 78999999887765543322 23499999999876 34454331 224668899999999865 111
Q ss_pred --------CHHHHHHHHhhcCC-------CC-------------------------------------------------
Q psy7557 240 --------FEPQINKTSIYINP-------NR------------------------------------------------- 255 (936)
Q Consensus 240 --------~~~~~~~i~~~~~~-------~~------------------------------------------------- 255 (936)
+...+..+...+.+ ..
T Consensus 223 g~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~d 302 (925)
T PRK12903 223 GGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVE 302 (925)
T ss_pred CCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCc
Confidence 11112222222211 01
Q ss_pred ------------------------------------------------------------cEEEEEeccchHHHHHHHHh
Q psy7557 256 ------------------------------------------------------------QTVMTSATWNKDVQRVAKKY 275 (936)
Q Consensus 256 ------------------------------------------------------------q~~~~SAT~~~~~~~~~~~~ 275 (936)
.+.+||.|......++..-|
T Consensus 303 YiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY 382 (925)
T PRK12903 303 YIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIY 382 (925)
T ss_pred eEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHh
Confidence 22233333332222333333
Q ss_pred cCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCC
Q psy7557 276 MVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGD 355 (936)
Q Consensus 276 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~ 355 (936)
..+.+.|...... ...-....++....+|...+.+.+......+.|+||.|.|....+.++..|...|++...+++.
T Consensus 383 ~l~Vv~IPTnkP~---~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk 459 (925)
T PRK12903 383 NMRVNVVPTNKPV---IRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAK 459 (925)
T ss_pred CCCEEECCCCCCe---eeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeeccc
Confidence 2222222111100 0000111355667788888888777766788999999999999999999999999998888886
Q ss_pred CCHHHHHHHHHHhhcC-CcEEEEEecccccCCCCCCCc--------EEEEecCCCCccccccCCCCcccCCCceeEEEEe
Q psy7557 356 LSQEDREIALEDITSG-YARICVATDVASRGLDVPDLT--------HVINYDFPSHIEEYVHRVGRTGRAGKSGESITLM 426 (936)
Q Consensus 356 ~~~~~R~~~~~~f~~g-~~~vLvaT~~~~~GiDip~v~--------~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~ 426 (936)
- .+++.-+-. ..| .-.|.|||+.++||.||.--. +||....|.|..---|..|||||.|.+|.+-.|+
T Consensus 460 ~--~e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~l 536 (925)
T PRK12903 460 Q--NAREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFI 536 (925)
T ss_pred c--hhhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEE
Confidence 3 344433322 344 346999999999999996332 8999999999888889999999999999999999
Q ss_pred cccC
Q psy7557 427 TRKD 430 (936)
Q Consensus 427 ~~~~ 430 (936)
+-.|
T Consensus 537 SLeD 540 (925)
T PRK12903 537 SLDD 540 (925)
T ss_pred ecch
Confidence 8766
No 240
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.76 E-value=6.6e-17 Score=171.98 Aligned_cols=154 Identities=19% Similarity=0.178 Sum_probs=122.4
Q ss_pred CceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCChH
Q psy7557 774 NRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKA 853 (936)
Q Consensus 774 ~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~ 853 (936)
..|++..|||+.+.-.... ..+-+.-.+.+..+ +...+.+.+.....+-|+.-++.....+.+++|-+-|++
T Consensus 386 ~~q~i~VSATPg~~E~e~s---~~~vveQiIRPTGL-----lDP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKk 457 (663)
T COG0556 386 IPQTIYVSATPGDYELEQS---GGNVVEQIIRPTGL-----LDPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKK 457 (663)
T ss_pred cCCEEEEECCCChHHHHhc---cCceeEEeecCCCC-----CCCceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHH
Confidence 3599999999754322221 11222333333322 233344555566666677666665567799999999999
Q ss_pred HHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEEccC-----CCChhhhHh
Q psy7557 854 SVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDF-----PSHIEEYVH 928 (936)
Q Consensus 854 ~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~-----p~s~~~yiq 928 (936)
.|+.|..+|...|+++.++|++...-+|.+++.+++.|..+|||.-+.+-+|+|+|.|++|..+|. ..|-.+.||
T Consensus 458 mAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQ 537 (663)
T COG0556 458 MAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQ 537 (663)
T ss_pred HHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998764 578999999
Q ss_pred hhhhccC
Q psy7557 929 RVGRTGE 935 (936)
Q Consensus 929 r~GRaGR 935 (936)
-+|||.|
T Consensus 538 tIGRAAR 544 (663)
T COG0556 538 TIGRAAR 544 (663)
T ss_pred HHHHHhh
Confidence 9999998
No 241
>KOG1123|consensus
Probab=99.75 E-value=5.2e-18 Score=177.78 Aligned_cols=293 Identities=16% Similarity=0.204 Sum_probs=202.8
Q ss_pred CCCcHHHHHHHHhhh-cC--CcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc
Q psy7557 617 TTPSPIQAQAWPILM-SG--HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693 (936)
Q Consensus 617 ~~p~~iQ~~ai~~~l-~g--~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 693 (936)
..++|+|..++..+. +| +.-+++.|+|+|||++-+-++. .-.+++|++|.+---+.|+..++..|
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~------------tikK~clvLcts~VSVeQWkqQfk~w 368 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC------------TIKKSCLVLCTSAVSVEQWKQQFKQW 368 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee------------eecccEEEEecCccCHHHHHHHHHhh
Confidence 578999999999988 33 6899999999999998665433 23568999999988899999999998
Q ss_pred cCC-CCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcC--------CCCCCCceEEEEcccchhccCCCHHHH
Q psy7557 694 DYK-GLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRA--------SIDLKAVSFVVLDEADRMLDLGFEPQI 764 (936)
Q Consensus 694 ~~~-~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~--------~~~~~~i~~lViDEah~l~~~~~~~~~ 764 (936)
+.. .-.++..+..... ....++.|+|+|..++..--.+. .+.-+.++++++||+|.+...-|+..+
T Consensus 369 sti~d~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVl 443 (776)
T KOG1123|consen 369 STIQDDQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVL 443 (776)
T ss_pred cccCccceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHH
Confidence 643 3334444443221 12356899999987654321111 122466899999999998877787777
Q ss_pred HHHhhhcCCCceEEEEEecCChHHHHHHH-HhcCCCeEEEeCCCCcccC--------------------------CceEE
Q psy7557 765 NKTSIYINPNRQTVMTSATWNKDVQRVAK-KYMVNPVKVNVGSLDLAAT--------------------------HTVTQ 817 (936)
Q Consensus 765 ~~i~~~~~~~~q~v~~SAT~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~--------------------------~~~~~ 817 (936)
.-+..+. .++++||+-++-..+.. .|+..|..+..+-.++... ...+.
T Consensus 444 siv~aHc-----KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr 518 (776)
T KOG1123|consen 444 SIVQAHC-----KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKR 518 (776)
T ss_pred HHHHHHh-----hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhh
Confidence 7666655 38999998544333221 1232332221111111111 11122
Q ss_pred EEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhc-CCCcEE
Q psy7557 818 KIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITS-GYARIC 896 (936)
Q Consensus 818 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~-g~~~vL 896 (936)
...++-+..|+..-..+++-+...+.++|||..+.-.....+-.|. --.++|..+|.+|.++++.|+- ..++.+
T Consensus 519 ~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~-----KpfIYG~Tsq~ERm~ILqnFq~n~~vNTI 593 (776)
T KOG1123|consen 519 MLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQNERMKILQNFQTNPKVNTI 593 (776)
T ss_pred heeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcC-----CceEECCCchhHHHHHHHhcccCCccceE
Confidence 2334445556665555555555567899999999877777766653 3468899999999999999984 568889
Q ss_pred EecccCccCCCCCCCCEEEEccCC-CChhhhHhhhhhccCC
Q psy7557 897 VATDVASRGLDVPDLTHVINYDFP-SHIEEYVHRVGRTGEF 936 (936)
Q Consensus 897 VaT~~~~~Gidip~v~~VI~~d~p-~s~~~yiqr~GRaGR~ 936 (936)
+-+.+....+|+|..+++|+.... .|-.+=.||.||.-|+
T Consensus 594 FlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRA 634 (776)
T KOG1123|consen 594 FLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRA 634 (776)
T ss_pred EEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHH
Confidence 999999999999999999986543 4677889999998875
No 242
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.75 E-value=2.9e-17 Score=190.50 Aligned_cols=115 Identities=17% Similarity=0.201 Sum_probs=104.4
Q ss_pred EEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEec
Q psy7557 820 IILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVAT 899 (936)
Q Consensus 820 ~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT 899 (936)
++.....|...+.+.+......+.|+||||+|+..++.++..|...++....+|+ .+.+|+..+..|+.+...|+|||
T Consensus 576 vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIAT 653 (1025)
T PRK12900 576 VYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIAT 653 (1025)
T ss_pred EecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEec
Confidence 4555667888999988877677889999999999999999999999999999997 68899999999999999999999
Q ss_pred ccCccCCCCC---CCC-----EEEEccCCCChhhhHhhhhhccCC
Q psy7557 900 DVASRGLDVP---DLT-----HVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 900 ~~~~~Gidip---~v~-----~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
++++||+||+ +|. +||+++.|.|...|.||+|||||.
T Consensus 654 NMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRq 698 (1025)
T PRK12900 654 NMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQ 698 (1025)
T ss_pred cCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcC
Confidence 9999999999 553 459999999999999999999995
No 243
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.73 E-value=2.5e-16 Score=181.60 Aligned_cols=337 Identities=18% Similarity=0.204 Sum_probs=208.0
Q ss_pred hcccCCccccccCcCCccccCCCHHHHHHHHhhCCCceEEeecCCCccCCCCCCCCCCcccC-hHHhhcCCHHHHHHH-H
Q psy7557 15 KWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTS-FKQAFQHYPEILRQL-E 92 (936)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~-f~~~~~~~~~l~~~l-~ 92 (936)
+.+++.++...+..-.+....+++++..........- +. .+. .+.. ..++|.+ +.++. .
T Consensus 11 ~lk~~~~~v~~in~le~~~~~lsd~eL~~~t~~~k~r-l~----~g~-----------~ld~il~eafAv---vrEa~~R 71 (870)
T CHL00122 11 KLNKYQTLVNQINLLEEELKNLTDTELRSKTNKLKKR-LS----NGQ-----------NLNKIIPESFAL---TREASFR 71 (870)
T ss_pred HHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHH-HH----cCC-----------chHHHHHHHHHH---HHHHHHH
Confidence 4445555666666667888999998776443322100 00 110 0000 0111111 22222 3
Q ss_pred hCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHh
Q psy7557 93 NLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK 172 (936)
Q Consensus 93 ~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 172 (936)
.+|. .|++.|.-+.-.+..| -|+.+.||.|||+++.+|++...+ .|..|-|++++..||.+-++.+..
T Consensus 72 ~lG~-r~ydvQlig~l~L~~G--~IaEm~TGEGKTL~a~l~ayl~aL---------~G~~VhVvT~NdyLA~RD~e~m~p 139 (870)
T CHL00122 72 TLGL-RHFDVQLIGGLVLNDG--KIAEMKTGEGKTLVATLPAYLNAL---------TGKGVHIVTVNDYLAKRDQEWMGQ 139 (870)
T ss_pred HhCC-CCCchHhhhhHhhcCC--ccccccCCCCchHHHHHHHHHHHh---------cCCceEEEeCCHHHHHHHHHHHHH
Confidence 3677 6999998876666555 599999999999999999976553 366799999999999999999888
Q ss_pred -ccCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhH-HHHHcC------CcCCCCceEEEEccchhhh-cCC----
Q psy7557 173 -IDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLN-DFVSRA------SIDLKAVSFVVLDEADRML-DLG---- 239 (936)
Q Consensus 173 -~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~-~~l~~~------~~~~~~~~~lViDEah~l~-~~~---- 239 (936)
|...|+.+.++.++.+...... .-.+||+++|..-+- |.|..+ ......+.+.|+||+|.++ |..
T Consensus 140 vy~~LGLsvg~i~~~~~~~err~--aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPL 217 (870)
T CHL00122 140 IYRFLGLTVGLIQEGMSSEERKK--NYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPL 217 (870)
T ss_pred HHHHcCCceeeeCCCCChHHHHH--hcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCce
Confidence 4678999999988766644322 234899999997652 344332 1224668999999999865 110
Q ss_pred -----------CHHHHHHHHhhcCCC------------------------------------------------------
Q psy7557 240 -----------FEPQINKTSIYINPN------------------------------------------------------ 254 (936)
Q Consensus 240 -----------~~~~~~~i~~~~~~~------------------------------------------------------ 254 (936)
.......+...+..+
T Consensus 218 iISg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~ 297 (870)
T CHL00122 218 IISGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFK 297 (870)
T ss_pred eccCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhc
Confidence 111111111111110
Q ss_pred --------------------------------------------------------------CcEEEEEeccchHHHHHH
Q psy7557 255 --------------------------------------------------------------RQTVMTSATWNKDVQRVA 272 (936)
Q Consensus 255 --------------------------------------------------------------~q~~~~SAT~~~~~~~~~ 272 (936)
..+.+||.|.......+.
T Consensus 298 d~dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~ 377 (870)
T CHL00122 298 NVHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFE 377 (870)
T ss_pred CCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHH
Confidence 023444444443333333
Q ss_pred HHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeee
Q psy7557 273 KKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSL 352 (936)
Q Consensus 273 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~ 352 (936)
..|..+.+.|...... ...-....++....+|...+.+.+......+.|+||-|.|....+.++..|...+++...+
T Consensus 378 ~iY~l~vv~IPtnkp~---~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vL 454 (870)
T CHL00122 378 KIYNLEVVCIPTHRPM---LRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLL 454 (870)
T ss_pred HHhCCCEEECCCCCCc---cceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCcccee
Confidence 3333332222111110 0001122345566778888887777666789999999999999999999999999999888
Q ss_pred cCCCC--HHHHHHHHHHhhcCCcEEEEEecccccCCCCC
Q psy7557 353 YGDLS--QEDREIALEDITSGYARICVATDVASRGLDVP 389 (936)
Q Consensus 353 h~~~~--~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip 389 (936)
++.-. ..+-.-+-+.=+ .-.|-|||+.++||.||.
T Consensus 455 NAk~~~~~~EA~IIA~AG~--~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 455 NAKPENVRRESEIVAQAGR--KGSITIATNMAGRGTDII 491 (870)
T ss_pred eCCCccchhHHHHHHhcCC--CCcEEEeccccCCCcCee
Confidence 88632 233333322222 345999999999999984
No 244
>KOG0920|consensus
Probab=99.73 E-value=3.3e-16 Score=182.02 Aligned_cols=301 Identities=17% Similarity=0.231 Sum_probs=205.7
Q ss_pred cHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhcc--CCC
Q psy7557 620 SPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID--YKG 697 (936)
Q Consensus 620 ~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~--~~~ 697 (936)
+..+.+.+..+.+...+++.+.||+|||.-.---++...... +...++++--|.|--|..+++++..=. ..|
T Consensus 175 ~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~------~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g 248 (924)
T KOG0920|consen 175 YKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIES------GAACNIICTQPRRISAISVAERVAKERGESLG 248 (924)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhc------CCCCeEEecCCchHHHHHHHHHHHHHhccccC
Confidence 566777788888888999999999999983222233332221 256678999999998888888886632 233
Q ss_pred CEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchh-ccCCCHHHHHHHhhhcCCCce
Q psy7557 698 LKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRM-LDLGFEPQINKTSIYINPNRQ 776 (936)
Q Consensus 698 ~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l-~~~~~~~~~~~i~~~~~~~~q 776 (936)
-.++.-.+..... .....+++||.|.|++.+... -.+..+..+|+||+|.= .+..|.-.+.+.+...+|+.+
T Consensus 249 ~~VGYqvrl~~~~------s~~t~L~fcTtGvLLr~L~~~-~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~Lk 321 (924)
T KOG0920|consen 249 EEVGYQVRLESKR------SRETRLLFCTTGVLLRRLQSD-PTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLK 321 (924)
T ss_pred CeeeEEEeeeccc------CCceeEEEecHHHHHHHhccC-cccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCce
Confidence 3333333322111 123689999999999988774 35889999999999953 344466666666666679999
Q ss_pred EEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCC---------------ceEEE------------EEEcCcchhHH
Q psy7557 777 TVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATH---------------TVTQK------------IIILDEDEKKD 829 (936)
Q Consensus 777 ~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---------------~~~~~------------~~~~~~~~k~~ 829 (936)
+|+||||+. .+.+...|...|+. .+......... ...+. ......+-..+
T Consensus 322 vILMSAT~d--ae~fs~YF~~~pvi-~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~ 398 (924)
T KOG0920|consen 322 VILMSATLD--AELFSDYFGGCPVI-TIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYD 398 (924)
T ss_pred EEEeeeecc--hHHHHHHhCCCceE-eecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHH
Confidence 999999985 55555555555543 32221110000 00000 01111122334
Q ss_pred HHHHHHHhcc--CCCCcEEEEcCChHHHHHHHHHHHhcC-------CceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecc
Q psy7557 830 WLMEFFDNMD--EERDKVMVFMGRKASVSAMSSDLACQY-------RKSCSLYGDLSQEDREIALEDITSGYARICVATD 900 (936)
Q Consensus 830 ~l~~~l~~~~--~~~~~~iIF~~s~~~~~~l~~~L~~~~-------~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~ 900 (936)
.+..++.... ...+.+|||.+.......+...|.... +-+..+|+.|+..++..++..--.|..+|++||+
T Consensus 399 Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTN 478 (924)
T KOG0920|consen 399 LIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATN 478 (924)
T ss_pred HHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhh
Confidence 4444444332 346789999999999999999997521 3456789999999999999999999999999999
Q ss_pred cCccCCCCCCCCEEEE--------ccCCC----------ChhhhHhhhhhccCC
Q psy7557 901 VASRGLDVPDLTHVIN--------YDFPS----------HIEEYVHRVGRTGEF 936 (936)
Q Consensus 901 ~~~~Gidip~v~~VI~--------~d~p~----------s~~~yiqr~GRaGR~ 936 (936)
+++..|.|++|-+||. ||.-. |...-.||.|||||.
T Consensus 479 IAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv 532 (924)
T KOG0920|consen 479 IAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV 532 (924)
T ss_pred hHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc
Confidence 9999999999999996 55443 334447999999994
No 245
>KOG0923|consensus
Probab=99.72 E-value=2.1e-16 Score=171.31 Aligned_cols=297 Identities=19% Similarity=0.237 Sum_probs=195.9
Q ss_pred cHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhccCCCCE
Q psy7557 620 SPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLK 699 (936)
Q Consensus 620 ~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~ 699 (936)
+++-.+.+..+....-+|+.|.||||||. .+|-+.+-... ...|.++-+--|.|--|..++.++.+- .|.+
T Consensus 267 y~ykdell~av~e~QVLiI~GeTGSGKTT--QiPQyL~EaGy-----tk~gk~IgcTQPRRVAAmSVAaRVA~E--Mgvk 337 (902)
T KOG0923|consen 267 YPYKDELLKAVKEHQVLIIVGETGSGKTT--QIPQYLYEAGY-----TKGGKKIGCTQPRRVAAMSVAARVAEE--MGVK 337 (902)
T ss_pred hhhHHHHHHHHHhCcEEEEEcCCCCCccc--cccHHHHhccc-----ccCCceEeecCcchHHHHHHHHHHHHH--hCcc
Confidence 56666777777777889999999999997 67755333221 134556888999999999888877652 1222
Q ss_pred EEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccch-hccCC-CHHHHHHHhhhcCCCceE
Q psy7557 700 AVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADR-MLDLG-FEPQINKTSIYINPNRQT 777 (936)
Q Consensus 700 ~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~-l~~~~-~~~~~~~i~~~~~~~~q~ 777 (936)
.+.-.|-...-... .....-|=++|-|.|+.-+... ..+...+.+||||||. -+... ....+..|. ..+|+..+
T Consensus 338 LG~eVGYsIRFEdc--TSekTvlKYMTDGmLlREfL~e-pdLasYSViiiDEAHERTL~TDILfgLvKDIa-r~RpdLKl 413 (902)
T KOG0923|consen 338 LGHEVGYSIRFEDC--TSEKTVLKYMTDGMLLREFLSE-PDLASYSVIIVDEAHERTLHTDILFGLVKDIA-RFRPDLKL 413 (902)
T ss_pred cccccceEEEeccc--cCcceeeeeecchhHHHHHhcc-ccccceeEEEeehhhhhhhhhhHHHHHHHHHH-hhCCcceE
Confidence 22112211111000 0112457799999998765543 3588999999999994 22222 122333333 35689999
Q ss_pred EEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHH-HHHHhc-cCCCCcEEEEcCChHHH
Q psy7557 778 VMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLM-EFFDNM-DEERDKVMVFMGRKASV 855 (936)
Q Consensus 778 v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~-~~l~~~-~~~~~~~iIF~~s~~~~ 855 (936)
++.|||+ +...+...|...|+...-+. .. .+.-++...++.+=.+..+ .++.-+ ..+.+-+|||.......
T Consensus 414 lIsSAT~--DAekFS~fFDdapIF~iPGR-Ry----PVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEI 486 (902)
T KOG0923|consen 414 LISSATM--DAEKFSAFFDDAPIFRIPGR-RY----PVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEI 486 (902)
T ss_pred Eeecccc--CHHHHHHhccCCcEEeccCc-cc----ceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHH
Confidence 9999998 45666666655565443332 21 2222233333333222222 222222 24457899999988877
Q ss_pred HHHHHHHHh----cC-----CceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEEccC-------
Q psy7557 856 SAMSSDLAC----QY-----RKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDF------- 919 (936)
Q Consensus 856 ~~l~~~L~~----~~-----~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~------- 919 (936)
+.....|.. +| .-++.+|+.|+++.+..+++---.|..+|++||++++..+.|++|..||.-++
T Consensus 487 Et~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsyn 566 (902)
T KOG0923|consen 487 ETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYN 566 (902)
T ss_pred HHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcC
Confidence 666666543 22 23577999999999999999999999999999999999999999999997443
Q ss_pred -----------CCChhhhHhhhhhccCC
Q psy7557 920 -----------PSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 920 -----------p~s~~~yiqr~GRaGR~ 936 (936)
|-|..+-.||+|||||-
T Consensus 567 prtGmesL~v~piSKAsA~QRaGRAGRt 594 (902)
T KOG0923|consen 567 PRTGMESLLVTPISKASANQRAGRAGRT 594 (902)
T ss_pred CCcCceeEEEeeechhhhhhhccccCCC
Confidence 45667788999999993
No 246
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.72 E-value=9.9e-17 Score=151.08 Aligned_cols=121 Identities=40% Similarity=0.609 Sum_probs=112.7
Q ss_pred hhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEeccccc
Q psy7557 305 DEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASR 384 (936)
Q Consensus 305 ~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~ 384 (936)
..|...+.+.+.......+++||||++...++.+++.|...+.++..+||+++..+|..+++.|.+|...+|++|+++++
T Consensus 11 ~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~ 90 (131)
T cd00079 11 DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIAR 90 (131)
T ss_pred HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhc
Confidence 36888888888876556789999999999999999999988899999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEecCCCCccccccCCCCcccCCCceeEEEE
Q psy7557 385 GLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITL 425 (936)
Q Consensus 385 GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~ 425 (936)
|+|+|.+++||.+++|.+..+|.|++||+||.|+.|.++++
T Consensus 91 G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 91 GIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 99999999999999999999999999999999998887753
No 247
>KOG0924|consensus
Probab=99.71 E-value=4.4e-16 Score=169.04 Aligned_cols=294 Identities=18% Similarity=0.209 Sum_probs=187.6
Q ss_pred cHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhccCCCCE
Q psy7557 620 SPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLK 699 (936)
Q Consensus 620 ~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~ 699 (936)
...+.+.+..+-.++-+++++.||||||. .+|-+.+... -.....+-+..|.|.-|..+++++..-. +..
T Consensus 358 f~~R~~ll~~ir~n~vvvivgETGSGKTT--Ql~QyL~edG------Y~~~GmIGcTQPRRvAAiSVAkrVa~EM--~~~ 427 (1042)
T KOG0924|consen 358 FACRDQLLSVIRENQVVVIVGETGSGKTT--QLAQYLYEDG------YADNGMIGCTQPRRVAAISVAKRVAEEM--GVT 427 (1042)
T ss_pred HHHHHHHHHHHhhCcEEEEEecCCCCchh--hhHHHHHhcc------cccCCeeeecCchHHHHHHHHHHHHHHh--CCc
Confidence 45566677777777888999999999997 4554322211 1234467788899999988888886621 112
Q ss_pred EEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhc-cCCCHHHHHHHhhhcCCCceEE
Q psy7557 700 AVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRML-DLGFEPQINKTSIYINPNRQTV 778 (936)
Q Consensus 700 ~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~-~~~~~~~~~~i~~~~~~~~q~v 778 (936)
...-.|-.-.-+.. ......|-+.|-|.|+.-..... .+.+.+.||+||||.-. .....--+.+.....+.+..+|
T Consensus 428 lG~~VGYsIRFEdv--T~~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKli 504 (1042)
T KOG0924|consen 428 LGDTVGYSIRFEDV--TSEDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLI 504 (1042)
T ss_pred cccccceEEEeeec--CCCceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEE
Confidence 22222211110000 01224688999998876443322 47888999999999521 1111111112222234588999
Q ss_pred EEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHH----HHHhc-cCCCCcEEEEcCChH
Q psy7557 779 MTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLME----FFDNM-DEERDKVMVFMGRKA 853 (936)
Q Consensus 779 ~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~----~l~~~-~~~~~~~iIF~~s~~ 853 (936)
..|||+ +...+...|...|....-+. ..+ +.-.+ ......+++.. .+.-+ ....+-++||.....
T Consensus 505 VtSATm--~a~kf~nfFgn~p~f~IpGR-TyP----V~~~~---~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqe 574 (1042)
T KOG0924|consen 505 VTSATM--DAQKFSNFFGNCPQFTIPGR-TYP----VEIMY---TKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQE 574 (1042)
T ss_pred Eeeccc--cHHHHHHHhCCCceeeecCC-ccc----eEEEe---ccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCc
Confidence 999998 56778777776665433222 211 11111 11122222222 22212 234477999998877
Q ss_pred HHHHHHHHHHh----c------CCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEEccC----
Q psy7557 854 SVSAMSSDLAC----Q------YRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDF---- 919 (936)
Q Consensus 854 ~~~~l~~~L~~----~------~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~---- 919 (936)
.++..+..+.+ . ...+..+++.|++.-+.++++.-..|..+++|||++++..+.+|++.+||..++
T Consensus 575 diE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~k 654 (1042)
T KOG0924|consen 575 DIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLK 654 (1042)
T ss_pred chhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeee
Confidence 66655555443 2 345778999999999999999999999999999999999999999999997554
Q ss_pred --------------CCChhhhHhhhhhccCC
Q psy7557 920 --------------PSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 920 --------------p~s~~~yiqr~GRaGR~ 936 (936)
|-|-..--||.|||||-
T Consensus 655 vyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt 685 (1042)
T KOG0924|consen 655 VYNPRIGMDALQIVPISQANADQRAGRAGRT 685 (1042)
T ss_pred ecccccccceeEEEechhccchhhccccCCC
Confidence 55666778999999993
No 248
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.70 E-value=2.7e-15 Score=169.58 Aligned_cols=302 Identities=19% Similarity=0.167 Sum_probs=204.4
Q ss_pred CCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc
Q psy7557 614 LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693 (936)
Q Consensus 614 ~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 693 (936)
+|. .|++.|.-+.-.++.|+ ++...||+|||+++.+|++...+ .|..|-+++|+--||.|-++.+..+
T Consensus 75 lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL---------~G~~VhvvT~NdyLA~RDae~m~~l 142 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYAL---------QGRRVHVITVNDYLARRDAEWMGPL 142 (764)
T ss_pred cCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHH---------cCCCeEEEcCCHHHHHHHHHHHHHH
Confidence 577 89999999998888874 78999999999999999986663 4778999999999999999999885
Q ss_pred -cCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHH-HHHHcC------CCCCCCceEEEEcccchhccCC------
Q psy7557 694 -DYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLN-DFVSRA------SIDLKAVSFVVLDEADRMLDLG------ 759 (936)
Q Consensus 694 -~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~-~~l~~~------~~~~~~i~~lViDEah~l~~~~------ 759 (936)
...|+++.++.++.+....... -.|||+.+|...+- +.++.+ ....+.+.+.|+||+|.++=..
T Consensus 143 y~~LGLsvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLi 220 (764)
T PRK12326 143 YEALGLTVGWITEESTPEERRAA--YACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLV 220 (764)
T ss_pred HHhcCCEEEEECCCCCHHHHHHH--HcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCcee
Confidence 5779999999887665433222 25899999998753 233221 1224668899999999765210
Q ss_pred ---------CHHHHHHHhhhcCCC--------c-----------------------------------------------
Q psy7557 760 ---------FEPQINKTSIYINPN--------R----------------------------------------------- 775 (936)
Q Consensus 760 ---------~~~~~~~i~~~~~~~--------~----------------------------------------------- 775 (936)
....+..+...+.++ .
T Consensus 221 ISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~ 300 (764)
T PRK12326 221 LAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQR 300 (764)
T ss_pred eeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhc
Confidence 111122222222111 1
Q ss_pred ---------------------------------------------------------------eEEEEEecCChHHHHHH
Q psy7557 776 ---------------------------------------------------------------QTVMTSATWNKDVQRVA 792 (936)
Q Consensus 776 ---------------------------------------------------------------q~v~~SAT~~~~~~~~~ 792 (936)
.+.+||.|.......+.
T Consensus 301 d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~ 380 (764)
T PRK12326 301 DVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLR 380 (764)
T ss_pred CCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHH
Confidence 22333333322222222
Q ss_pred HHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEE
Q psy7557 793 KKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSL 872 (936)
Q Consensus 793 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~ 872 (936)
+-|..+- +.+.+.. +....-....++.....|...+++-+......+.|+||.+.|....+.++..|...+++...+
T Consensus 381 ~iY~l~V--v~IPtnk-p~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vL 457 (764)
T PRK12326 381 QFYDLGV--SVIPPNK-PNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVL 457 (764)
T ss_pred HHhCCcE--EECCCCC-CceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceee
Confidence 2222111 1111100 000001112345566778888888887777888999999999999999999999999999989
Q ss_pred eCCCCHHHHHHHHHHhhcCC-CcEEEecccCccCCCCCC---------------CCEEEEccCCCChhhhHhhhhhccC
Q psy7557 873 YGDLSQEDREIALEDITSGY-ARICVATDVASRGLDVPD---------------LTHVINYDFPSHIEEYVHRVGRTGE 935 (936)
Q Consensus 873 h~~l~~~~R~~~~~~F~~g~-~~vLVaT~~~~~Gidip~---------------v~~VI~~d~p~s~~~yiqr~GRaGR 935 (936)
++.-...+-..+- +.|+ -.|-|||+.++||.||.= =-|||-...|.|..-=-|-.|||||
T Consensus 458 NAk~~~~EA~IIa---~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGR 533 (764)
T PRK12326 458 NAKNDAEEARIIA---EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGR 533 (764)
T ss_pred ccCchHhHHHHHH---hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhccccc
Confidence 8763332222221 2343 479999999999999962 2379999999999999999999999
No 249
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.69 E-value=4.1e-15 Score=179.01 Aligned_cols=289 Identities=17% Similarity=0.213 Sum_probs=174.9
Q ss_pred HHhCCCCCCcHHHHHHHHHHh----cCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHH
Q psy7557 91 LENLSFTTPSPIQAQAWPILM----SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQI 166 (936)
Q Consensus 91 l~~~g~~~~~~~Q~~ai~~~~----~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~ 166 (936)
+...|| ++++-|.+....+. .+..+++.|+||+|||++|++|++... .+.++||++||++|+.|+
T Consensus 239 ~~~~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~----------~~~~vvI~t~T~~Lq~Ql 307 (820)
T PRK07246 239 IALLGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS----------DQRQIIVSVPTKILQDQI 307 (820)
T ss_pred hccCCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc----------CCCcEEEEeCcHHHHHHH
Confidence 344567 79999999555433 567889999999999999999988643 256899999999999999
Q ss_pred -HHHHHhcc-CCCCEEEEEeCCccch------H-----------------------------------------HHHHh-
Q psy7557 167 -EREVNKID-YKGLKAVCVYGGKEIE------P-----------------------------------------QLEKI- 196 (936)
Q Consensus 167 -~~~~~~~~-~~~~~~~~~~gg~~~~------~-----------------------------------------~~~~~- 196 (936)
.+.+..+. ..++++..+.|+...- . .|..+
T Consensus 308 ~~~~i~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~ 387 (820)
T PRK07246 308 MAEEVKAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLK 387 (820)
T ss_pred HHHHHHHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhh
Confidence 45565543 3466666666653210 0 00100
Q ss_pred -----------------------hcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCC-----C-------H
Q psy7557 197 -----------------------REGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLG-----F-------E 241 (936)
Q Consensus 197 -----------------------~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~-----~-------~ 241 (936)
...+||||+.-.-|...+.... .+...+++||||||++.+.. . .
T Consensus 388 ~~~~~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~ 466 (820)
T PRK07246 388 HDGNLSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFL 466 (820)
T ss_pred ccCCCCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHHH
Confidence 1135788888766655443332 25678999999999875311 0 0
Q ss_pred H--------------------------------------------------HHHHHH--------hh---------c---
Q psy7557 242 P--------------------------------------------------QINKTS--------IY---------I--- 251 (936)
Q Consensus 242 ~--------------------------------------------------~~~~i~--------~~---------~--- 251 (936)
. .+..+. .. +
T Consensus 467 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~ 546 (820)
T PRK07246 467 QTIQKALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESE 546 (820)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 0 000000 00 0
Q ss_pred ------------------------CCCCcEEEEEeccc--hHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeC--
Q psy7557 252 ------------------------NPNRQTVMTSATWN--KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD-- 303 (936)
Q Consensus 252 ------------------------~~~~q~~~~SAT~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-- 303 (936)
+....++++|||++ +.. .+...+..+.......+. .. -.+..+++.
T Consensus 547 ~~~~~~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f-~~~~~lGl~~~~~~~~~~----~~-~~~~~~~i~~~ 620 (820)
T PRK07246 547 KQSEKRVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRV-SLADLLGFEEYLFHKIEK----DK-KQDQLVVVDQD 620 (820)
T ss_pred CCCCcceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCC-cHHHHcCCCccceecCCC----Ch-HHccEEEeCCC
Confidence 00135788999985 222 243333322111110010 00 111111111
Q ss_pred --------chhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEE
Q psy7557 304 --------EDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARI 375 (936)
Q Consensus 304 --------~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~v 375 (936)
..+-.+.+.+.+......+++++|+++|.+..+.+++.|......+ ...|.-. .|..+++.|+++.-.|
T Consensus 621 ~p~~~~~~~~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~v 697 (820)
T PRK07246 621 MPLVTETSDEVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQI 697 (820)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeE
Confidence 1122233444443333457899999999999999999987654444 3334211 2566899999998899
Q ss_pred EEEecccccCCCCCC--CcEEEEecCC
Q psy7557 376 CVATDVASRGLDVPD--LTHVINYDFP 400 (936)
Q Consensus 376 LvaT~~~~~GiDip~--v~~VI~~d~p 400 (936)
|++|+.+.+|||+|+ ...||...+|
T Consensus 698 LlG~~sFwEGVD~p~~~~~~viI~kLP 724 (820)
T PRK07246 698 LLGLGSFWEGVDFVQADRMIEVITRLP 724 (820)
T ss_pred EEecchhhCCCCCCCCCeEEEEEecCC
Confidence 999999999999983 5566777766
No 250
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=2.9e-15 Score=172.20 Aligned_cols=277 Identities=19% Similarity=0.201 Sum_probs=181.0
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHh-
Q psy7557 94 LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK- 172 (936)
Q Consensus 94 ~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~- 172 (936)
+|. .|+++|.-+--.+..|+ |+.+.||-|||+++.+|++...+ .|..|-|++++..||..-.+.+..
T Consensus 82 lG~-r~ydVQliGgl~Lh~G~--IAEM~TGEGKTL~atlpaylnAL---------~GkgVhVVTvNdYLA~RDae~m~~v 149 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVLHEGQ--IAEMKTGEGKTLVATLPSYLNAL---------TGKGVHVVTVNDYLARRDAEWMGQV 149 (939)
T ss_pred hCC-CcchhHHHhhhhhcCCc--eeeecCCCChhHHHHHHHHHHhh---------cCCCeEEEeCCHHHHHhHHHHHHHH
Confidence 566 79999988877777776 99999999999999999987653 466799999999999998888888
Q ss_pred ccCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchh-----HHHHHc--CCcCCCCceEEEEccchhhh-cCC-----
Q psy7557 173 IDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRL-----NDFVSR--ASIDLKAVSFVVLDEADRML-DLG----- 239 (936)
Q Consensus 173 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l-----~~~l~~--~~~~~~~~~~lViDEah~l~-~~~----- 239 (936)
|...|++|+++.++.+... .+..-.|||+++|+..+ .|.+.. .......+.+.||||+|.++ |..
T Consensus 150 y~~LGLtvg~i~~~~~~~e--rr~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLI 227 (939)
T PRK12902 150 HRFLGLSVGLIQQDMSPEE--RKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLI 227 (939)
T ss_pred HHHhCCeEEEECCCCChHH--HHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCccc
Confidence 4678999999987765443 33334699999999987 443332 12335678999999999865 211
Q ss_pred ----------CHHHHHHHHhhcCC--------------CCcEE-------------------------------------
Q psy7557 240 ----------FEPQINKTSIYINP--------------NRQTV------------------------------------- 258 (936)
Q Consensus 240 ----------~~~~~~~i~~~~~~--------------~~q~~------------------------------------- 258 (936)
.......+...+.+ ..+.+
T Consensus 228 ISg~~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~ 307 (939)
T PRK12902 228 ISGQVERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAK 307 (939)
T ss_pred ccCCCccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHH
Confidence 11111112211111 11222
Q ss_pred -----------------------------------------------------------------------EEEeccchH
Q psy7557 259 -----------------------------------------------------------------------MTSATWNKD 267 (936)
Q Consensus 259 -----------------------------------------------------------------------~~SAT~~~~ 267 (936)
+||.|....
T Consensus 308 ~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te 387 (939)
T PRK12902 308 ELFIKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTE 387 (939)
T ss_pred HHHhcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHH
Confidence 222222222
Q ss_pred HHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCC
Q psy7557 268 VQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYR 347 (936)
Q Consensus 268 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~ 347 (936)
...+..-|..+.+.|...... ...-....++....+|...+.+.+......+.|+||-+.|....+.++..|...|+
T Consensus 388 ~~Ef~~iY~l~Vv~IPTnkP~---~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi 464 (939)
T PRK12902 388 EVEFEKTYKLEVTVIPTNRPR---RRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGI 464 (939)
T ss_pred HHHHHHHhCCcEEEcCCCCCe---eeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCC
Confidence 222222222221111111000 00011123455667888888887777767899999999999999999999999999
Q ss_pred ceeeecCCCCHHHHHH--HHHHhhcCCcEEEEEecccccCCCCC
Q psy7557 348 KSCSLYGDLSQEDREI--ALEDITSGYARICVATDVASRGLDVP 389 (936)
Q Consensus 348 ~~~~~h~~~~~~~R~~--~~~~f~~g~~~vLvaT~~~~~GiDip 389 (936)
+...+++.-...+++. +-+.=+. -.|-|||+.++||.||.
T Consensus 465 ~h~vLNAk~~~~~~EA~IIa~AG~~--GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 465 PHNLLNAKPENVEREAEIVAQAGRK--GAVTIATNMAGRGTDII 506 (939)
T ss_pred chheeeCCCcchHhHHHHHHhcCCC--CcEEEeccCCCCCcCEe
Confidence 9988888632223332 2222222 35899999999999984
No 251
>KOG1123|consensus
Probab=99.67 E-value=3.8e-16 Score=163.94 Aligned_cols=307 Identities=16% Similarity=0.196 Sum_probs=201.9
Q ss_pred CCCcHHHHHHHHHHh-cC--CcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhc
Q psy7557 97 TTPSPIQAQAWPILM-SG--HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 173 (936)
Q Consensus 97 ~~~~~~Q~~ai~~~~-~g--~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 173 (936)
+.++|+|.+++.... +| |.-+++.|.|+|||++-+-++. . -..++|||+.+-.-+.|+..+|..+
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~-t-----------ikK~clvLcts~VSVeQWkqQfk~w 368 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC-T-----------IKKSCLVLCTSAVSVEQWKQQFKQW 368 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee-e-----------ecccEEEEecCccCHHHHHHHHHhh
Confidence 367899999999987 34 6889999999999998654332 2 2457999999988899999999987
Q ss_pred cC-CCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcC--------CcCCCCceEEEEccchhhhcCCCHHHH
Q psy7557 174 DY-KGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRA--------SIDLKAVSFVVLDEADRMLDLGFEPQI 244 (936)
Q Consensus 174 ~~-~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~--------~~~~~~~~~lViDEah~l~~~~~~~~~ 244 (936)
.. ..-.++..+.+... ....++.|+|+|-.++..--.+. .+.-....++++||+|.+...-|+..+
T Consensus 369 sti~d~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVl 443 (776)
T KOG1123|consen 369 STIQDDQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVL 443 (776)
T ss_pred cccCccceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHH
Confidence 53 23344444444322 23356899999987663211110 112345789999999988666566655
Q ss_pred HHHHhhcCCCCcEEEEEeccchHHHHHHH-HhcCCCEEE---------------------EeCCC-----CcccCCceEE
Q psy7557 245 NKTSIYINPNRQTVMTSATWNKDVQRVAK-KYMVNPVKV---------------------NVGSL-----DLAATHTVTQ 297 (936)
Q Consensus 245 ~~i~~~~~~~~q~~~~SAT~~~~~~~~~~-~~~~~~~~i---------------------~~~~~-----~~~~~~~~~~ 297 (936)
.-+.... -++++||+-.+-..... .|+..|-.. ...-. +.-.....+.
T Consensus 444 siv~aHc-----KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr 518 (776)
T KOG1123|consen 444 SIVQAHC-----KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKR 518 (776)
T ss_pred HHHHHHh-----hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhh
Confidence 5544433 38999998533221111 111111110 00000 0000111122
Q ss_pred EEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhc-CCcEEE
Q psy7557 298 KIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITS-GYARIC 376 (936)
Q Consensus 298 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~-g~~~vL 376 (936)
....+-...|+....-+++.+...+.++|||..+.......|-.|.. -.++|..+|.+|.++++.|+. ..++.+
T Consensus 519 ~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNTI 593 (776)
T KOG1123|consen 519 MLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNTI 593 (776)
T ss_pred heeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccceE
Confidence 23334445566554445555556788999999998777776666643 247899999999999999985 467888
Q ss_pred EEecccccCCCCCCCcEEEEecCC-CCccccccCCCCcccCCC------ceeEEEEecccC
Q psy7557 377 VATDVASRGLDVPDLTHVINYDFP-SHIEEYVHRVGRTGRAGK------SGESITLMTRKD 430 (936)
Q Consensus 377 vaT~~~~~GiDip~v~~VI~~d~p-~s~~~y~qr~GRagR~g~------~g~~~~~~~~~~ 430 (936)
+-.-+....+|+|..+++|+...- .|..+=.||.||.-|+.+ ....+++++.+.
T Consensus 594 FlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DT 654 (776)
T KOG1123|consen 594 FLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDT 654 (776)
T ss_pred EEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecch
Confidence 889999999999999999976543 467788999999998832 245666666654
No 252
>KOG0926|consensus
Probab=99.67 E-value=9.8e-16 Score=169.21 Aligned_cols=292 Identities=20% Similarity=0.266 Sum_probs=180.2
Q ss_pred HHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHh-ccCCCCEEEEE
Q psy7557 625 QAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK-IDYKGLKAVCV 703 (936)
Q Consensus 625 ~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~-~~~~~~~~~~~ 703 (936)
+....|..+--+|+|+.||||||. .+|-+.+-........ ..+..+=|.-|.|--|..+++++.. ++..+-.+...
T Consensus 263 ~IMEaIn~n~vvIIcGeTGsGKTT--QvPQFLYEAGf~s~~~-~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYq 339 (1172)
T KOG0926|consen 263 RIMEAINENPVVIICGETGSGKTT--QVPQFLYEAGFASEQS-SSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQ 339 (1172)
T ss_pred HHHHHhhcCCeEEEecCCCCCccc--cchHHHHHcccCCccC-CCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEE
Confidence 344445555668899999999997 6675543322111111 1244777889999888777776644 44334444333
Q ss_pred --ECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhcc-----CCCHHHHHHHhhhcC----
Q psy7557 704 --YGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLD-----LGFEPQINKTSIYIN---- 772 (936)
Q Consensus 704 --~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~-----~~~~~~~~~i~~~~~---- 772 (936)
+.|... ....|-++|-|.|+.-+.+.. .+.+.+.||+||||.-.- .|....+-.+.....
T Consensus 340 IRfd~ti~--------e~T~IkFMTDGVLLrEi~~Df-lL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~ 410 (1172)
T KOG0926|consen 340 IRFDGTIG--------EDTSIKFMTDGVLLREIENDF-LLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQC 410 (1172)
T ss_pred EEeccccC--------CCceeEEecchHHHHHHHHhH-hhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhc
Confidence 333322 236899999999998887654 488899999999995211 011222222222221
Q ss_pred --CCceEEEEEecCChHHHHHH--HHhcC-CCeEEEeCCCCcccCCceEEEEEEcCc---chhHHHHHHHHHhccCCCCc
Q psy7557 773 --PNRQTVMTSATWNKDVQRVA--KKYMV-NPVKVNVGSLDLAATHTVTQKIIILDE---DEKKDWLMEFFDNMDEERDK 844 (936)
Q Consensus 773 --~~~q~v~~SAT~~~~~~~~~--~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~k~~~l~~~l~~~~~~~~~ 844 (936)
....+|+||||+. +.++. +.++. -|-.+.+.....++...... ..+. .+.+...+.+-+.+ +.+.
T Consensus 411 ~~kpLKLIIMSATLR--VsDFtenk~LFpi~pPlikVdARQfPVsIHF~k---rT~~DYi~eAfrKtc~IH~kL--P~G~ 483 (1172)
T KOG0926|consen 411 QIKPLKLIIMSATLR--VSDFTENKRLFPIPPPLIKVDARQFPVSIHFNK---RTPDDYIAEAFRKTCKIHKKL--PPGG 483 (1172)
T ss_pred ccCceeEEEEeeeEE--ecccccCceecCCCCceeeeecccCceEEEecc---CCCchHHHHHHHHHHHHhhcC--CCCc
Confidence 2567899999984 34443 22222 23344444333222111110 0011 11222233333333 4577
Q ss_pred EEEEcCChHHHHHHHHHHHhcC----------------------------------------------------------
Q psy7557 845 VMVFMGRKASVSAMSSDLACQY---------------------------------------------------------- 866 (936)
Q Consensus 845 ~iIF~~s~~~~~~l~~~L~~~~---------------------------------------------------------- 866 (936)
+|||+....++..++..|++..
T Consensus 484 ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~ 563 (1172)
T KOG0926|consen 484 ILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFAS 563 (1172)
T ss_pred EEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchh
Confidence 9999999999999999987310
Q ss_pred -----------------------------------------CceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccC
Q psy7557 867 -----------------------------------------RKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRG 905 (936)
Q Consensus 867 -----------------------------------------~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~G 905 (936)
.-|..+++-|+.+++.++++.--.|..-++|||++++..
T Consensus 564 ~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETS 643 (1172)
T KOG0926|consen 564 LRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETS 643 (1172)
T ss_pred hhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcc
Confidence 012335666888888888888888988999999999999
Q ss_pred CCCCCCCEEEE--------ccCCCChhhh----------HhhhhhccC
Q psy7557 906 LDVPDLTHVIN--------YDFPSHIEEY----------VHRVGRTGE 935 (936)
Q Consensus 906 idip~v~~VI~--------~d~p~s~~~y----------iqr~GRaGR 935 (936)
+.||+|.+||. ||--..+..| =||+|||||
T Consensus 644 LTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGR 691 (1172)
T KOG0926|consen 644 LTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGR 691 (1172)
T ss_pred cccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCC
Confidence 99999999997 4443333333 499999999
No 253
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.67 E-value=5.3e-17 Score=137.04 Aligned_cols=77 Identities=43% Similarity=0.686 Sum_probs=75.1
Q ss_pred HhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccCC
Q psy7557 341 DLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAG 417 (936)
Q Consensus 341 ~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g 417 (936)
.|...++++..+||++++.+|..+++.|.+|...|||||+++++|+|+|++++||++++|.+..+|.|++||+||.|
T Consensus 2 ~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 2 FLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred ChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 57888999999999999999999999999999999999999999999999999999999999999999999999986
No 254
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.65 E-value=2.6e-14 Score=172.12 Aligned_cols=290 Identities=18% Similarity=0.210 Sum_probs=175.0
Q ss_pred HHHhCCCCCCcHHHHHHHHhhh----cCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHH
Q psy7557 610 QLENLSFTTPSPIQAQAWPILM----SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQ 685 (936)
Q Consensus 610 ~l~~~g~~~p~~iQ~~ai~~~l----~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q 685 (936)
.+...|| +++|-|.+....+. .+..+++.|+||+|||++|++|++... .+.++||++||++|+.|
T Consensus 238 ~~~~~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~----------~~~~vvI~t~T~~Lq~Q 306 (820)
T PRK07246 238 NIALLGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS----------DQRQIIVSVPTKILQDQ 306 (820)
T ss_pred hhccCCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc----------CCCcEEEEeCcHHHHHH
Confidence 3344577 79999999554433 567899999999999999999988543 25689999999999999
Q ss_pred H-HHHHHhcc-CCCCEEEEEECCccchH---------------H--------------------------------HHHH
Q psy7557 686 I-EREVNKID-YKGLKAVCVYGGKELEP---------------Q--------------------------------LEKI 716 (936)
Q Consensus 686 ~-~~~~~~~~-~~~~~~~~~~gg~~~~~---------------~--------------------------------~~~l 716 (936)
+ .+.+..+. ..++++..+.|+.+.-- . +..+
T Consensus 307 l~~~~i~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i 386 (820)
T PRK07246 307 IMAEEVKAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQL 386 (820)
T ss_pred HHHHHHHHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHh
Confidence 9 45565543 24556666665532100 0 0000
Q ss_pred ------------------------hcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCC-----CH------
Q psy7557 717 ------------------------REGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLG-----FE------ 761 (936)
Q Consensus 717 ------------------------~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~-----~~------ 761 (936)
...+||+|+.-.-|...+.... .+...+++||||||++.+.. ..
T Consensus 387 ~~~~~~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~ 465 (820)
T PRK07246 387 KHDGNLSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSF 465 (820)
T ss_pred hccCCCCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHH
Confidence 0135888888776665553332 25678999999999875310 00
Q ss_pred -H--------------------------------------------------HHHHHh--------h-----h----c--
Q psy7557 762 -P--------------------------------------------------QINKTS--------I-----Y----I-- 771 (936)
Q Consensus 762 -~--------------------------------------------------~~~~i~--------~-----~----~-- 771 (936)
. .+..+. . . +
T Consensus 466 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~ 545 (820)
T PRK07246 466 LQTIQKALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLES 545 (820)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 0 000000 0 0 0
Q ss_pred -------------------------CCCceEEEEEecCC--hHHHHHHHHhcCCC-eEEEeCCCCcccCCceEEEEEEc-
Q psy7557 772 -------------------------NPNRQTVMTSATWN--KDVQRVAKKYMVNP-VKVNVGSLDLAATHTVTQKIIIL- 822 (936)
Q Consensus 772 -------------------------~~~~q~v~~SAT~~--~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~- 822 (936)
+....+|++|||++ +.. .+.+.+..+. ...... .. ..-.+.++..
T Consensus 546 ~~~~~~~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f-~~~~~lGl~~~~~~~~~-~~----~~~~~~~~i~~ 619 (820)
T PRK07246 546 EKQSEKRVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRV-SLADLLGFEEYLFHKIE-KD----KKQDQLVVVDQ 619 (820)
T ss_pred cCCCCcceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCC-cHHHHcCCCccceecCC-CC----hHHccEEEeCC
Confidence 01136789999985 222 2444443321 111111 00 0001111111
Q ss_pred --C------cchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCc
Q psy7557 823 --D------EDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYAR 894 (936)
Q Consensus 823 --~------~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~ 894 (936)
+ ...-...+.+.+......+++++|+++|.+..+.++..|......+ ...|.-. .|..++++|+++...
T Consensus 620 ~~p~~~~~~~~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~ 696 (820)
T PRK07246 620 DMPLVTETSDEVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQ 696 (820)
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCe
Confidence 1 1112223444443333456899999999999999999987654333 3334222 256689999999889
Q ss_pred EEEecccCccCCCCCC--CCEEEEccCC
Q psy7557 895 ICVATDVASRGLDVPD--LTHVINYDFP 920 (936)
Q Consensus 895 vLVaT~~~~~Gidip~--v~~VI~~d~p 920 (936)
||++|+.+.+|||+|+ ...||...+|
T Consensus 697 vLlG~~sFwEGVD~p~~~~~~viI~kLP 724 (820)
T PRK07246 697 ILLGLGSFWEGVDFVQADRMIEVITRLP 724 (820)
T ss_pred EEEecchhhCCCCCCCCCeEEEEEecCC
Confidence 9999999999999973 5556776666
No 255
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.65 E-value=3.8e-16 Score=131.82 Aligned_cols=76 Identities=41% Similarity=0.655 Sum_probs=73.9
Q ss_pred HHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 861 DLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 861 ~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
.|...++.+..+||++++.+|..+++.|+++...|||||+++++|+|+|++++||++++|.+..+|+|++||+||.
T Consensus 2 ~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 2 FLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRI 77 (78)
T ss_dssp HHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTT
T ss_pred ChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCC
Confidence 5778899999999999999999999999999999999999999999999999999999999999999999999995
No 256
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.62 E-value=4.6e-15 Score=139.67 Aligned_cols=112 Identities=38% Similarity=0.564 Sum_probs=105.1
Q ss_pred chhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCcc
Q psy7557 825 DEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASR 904 (936)
Q Consensus 825 ~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~ 904 (936)
..|...+..++.......+++||||++...++.++..|...+.++..+||+++..+|..+.+.|.++...||++|+++++
T Consensus 11 ~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~ 90 (131)
T cd00079 11 DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIAR 90 (131)
T ss_pred HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhc
Confidence 36888888888877556789999999999999999999988899999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 905 GLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 905 Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
|+|+|.+++||.++.|.+..+|+|++||+||.
T Consensus 91 G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 122 (131)
T cd00079 91 GIDLPNVSVVINYDLPWSPSSYLQRIGRAGRA 122 (131)
T ss_pred CcChhhCCEEEEeCCCCCHHHheecccccccC
Confidence 99999999999999999999999999999994
No 257
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.61 E-value=4e-13 Score=154.22 Aligned_cols=80 Identities=16% Similarity=0.150 Sum_probs=63.3
Q ss_pred CCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhc----CCcEEEEEecccccCCCC-------
Q psy7557 320 EERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITS----GYARICVATDVASRGLDV------- 388 (936)
Q Consensus 320 ~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~----g~~~vLvaT~~~~~GiDi------- 388 (936)
..++.++|-+.|......+++.|.........+.|+.+ .|...++.|+. |.-.||++|+.+.+|||+
T Consensus 468 ~~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p 545 (636)
T TIGR03117 468 KAQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSP 545 (636)
T ss_pred HcCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCC
Confidence 35779999999999999999999765434455666543 35667888887 478999999999999999
Q ss_pred ---CCCcEEEEecCCC
Q psy7557 389 ---PDLTHVINYDFPS 401 (936)
Q Consensus 389 ---p~v~~VI~~d~p~ 401 (936)
..+++||...+|.
T Consensus 546 ~~G~~Ls~ViI~kLPF 561 (636)
T TIGR03117 546 DKDNLLTDLIITCAPF 561 (636)
T ss_pred CCCCcccEEEEEeCCC
Confidence 2488999988884
No 258
>COG4889 Predicted helicase [General function prediction only]
Probab=99.61 E-value=1.4e-15 Score=168.94 Aligned_cols=330 Identities=19% Similarity=0.194 Sum_probs=193.0
Q ss_pred HHHHHHHhCCCCCCcHHHHHHHHHHhcC----CcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHH
Q psy7557 86 EILRQLENLSFTTPSPIQAQAWPILMSG----HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRE 161 (936)
Q Consensus 86 ~l~~~l~~~g~~~~~~~Q~~ai~~~~~g----~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~ 161 (936)
++..++.-..-.+|+|+|+.|+..+.+| ..-=+++..|+|||.+.+- +...+ ...++|+|+|+.+
T Consensus 149 e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEal----------a~~~iL~LvPSIs 217 (1518)
T COG4889 149 ELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEAL----------AAARILFLVPSIS 217 (1518)
T ss_pred ccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHH----------hhhheEeecchHH
Confidence 3444444444568999999999998865 1234567789999998764 33333 2368999999999
Q ss_pred HHHHHHHHHHhccCCCCEEEEEeCCccchHH--------------------HH-----HhhcCCcEEEeCCchhHHHHHc
Q psy7557 162 LATQIEREVNKIDYKGLKAVCVYGGKEIEPQ--------------------LE-----KIREGCHILIATPGRLNDFVSR 216 (936)
Q Consensus 162 La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~--------------------~~-----~~~~~~~Iiv~Tp~~l~~~l~~ 216 (936)
|..|..+....-....++...++.+...... .. +-..+--||++|-+.+...-..
T Consensus 218 LLsQTlrew~~~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA 297 (1518)
T COG4889 218 LLSQTLREWTAQKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA 297 (1518)
T ss_pred HHHHHHHHHhhccCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHH
Confidence 9999988887755666776666654322111 00 1112456899999998766655
Q ss_pred CCcCCCCceEEEEccchhhhcCCCHHHHHHHHhhcC-----CCCcEEEEEeccch---HHHH------------------
Q psy7557 217 ASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYIN-----PNRQTVMTSATWNK---DVQR------------------ 270 (936)
Q Consensus 217 ~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~-----~~~q~~~~SAT~~~---~~~~------------------ 270 (936)
....+..++++|.|||||.........=..-+..+- +....+.++||+.- ....
T Consensus 298 Qe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~f 377 (1518)
T COG4889 298 QEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTF 377 (1518)
T ss_pred HHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhh
Confidence 556688999999999998643211100000000000 01234567777521 1111
Q ss_pred ------------HHHHhcCCCEEEEeCCCCcccCCceEEEEEEeC------chhhHHHHHHHHHh-cc------------
Q psy7557 271 ------------VAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD------EDEKKDWLMEFFDN-MD------------ 319 (936)
Q Consensus 271 ------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------~~~k~~~l~~~l~~-~~------------ 319 (936)
+.+.++.+.-.+...-..........+...... ...|.--...-+.. ..
T Consensus 378 Geef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ 457 (1518)
T COG4889 378 GEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADT 457 (1518)
T ss_pred chhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCc
Confidence 111122222111111000000000000000000 11111111111111 00
Q ss_pred CCCCcEEEEeCchHHHHHHHHHhh-----------h--cCCceee--ecCCCCHHHHHHHHH---HhhcCCcEEEEEecc
Q psy7557 320 EERDKVMVFMGRKASVSAMSSDLA-----------C--QYRKSCS--LYGDLSQEDREIALE---DITSGYARICVATDV 381 (936)
Q Consensus 320 ~~~~~~iVF~~~~~~~~~l~~~L~-----------~--~~~~~~~--~h~~~~~~~R~~~~~---~f~~g~~~vLvaT~~ 381 (936)
.+..+.|-||.+.++...+++.+. . .+..+.. ..|.|+..+|...+. .|...+++||-.-..
T Consensus 458 ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRc 537 (1518)
T COG4889 458 APMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARC 537 (1518)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchh
Confidence 012356889988887777766543 1 2333333 458999999965554 356789999999999
Q ss_pred cccCCCCCCCcEEEEecCCCCccccccCCCCcccC--CCc-eeEEEEe
Q psy7557 382 ASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRA--GKS-GESITLM 426 (936)
Q Consensus 382 ~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~--g~~-g~~~~~~ 426 (936)
|++|||+|..+.||.|++-.++.+.+|-+||+.|. |+. |+.|+=+
T Consensus 538 LSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPI 585 (1518)
T COG4889 538 LSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPI 585 (1518)
T ss_pred hhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEe
Confidence 99999999999999999999999999999999997 322 5555433
No 259
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.60 E-value=3.6e-14 Score=164.67 Aligned_cols=302 Identities=19% Similarity=0.191 Sum_probs=196.7
Q ss_pred CCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc
Q psy7557 614 LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693 (936)
Q Consensus 614 ~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 693 (936)
+|. .|+++|.-.--.+.. .-|+...||+|||+++.+|++...+ .|..|-+++|+.-||.|-++.+..+
T Consensus 79 lGm-~~ydVQliGg~~Lh~--G~iaEM~TGEGKTLvA~l~a~l~al---------~G~~VhvvT~ndyLA~RD~e~m~~l 146 (913)
T PRK13103 79 MGM-RHFDVQLIGGMTLHE--GKIAEMRTGEGKTLVGTLAVYLNAL---------SGKGVHVVTVNDYLARRDANWMRPL 146 (913)
T ss_pred hCC-CcchhHHHhhhHhcc--CccccccCCCCChHHHHHHHHHHHH---------cCCCEEEEeCCHHHHHHHHHHHHHH
Confidence 565 788888766555544 4688999999999999999986653 4778999999999999999999886
Q ss_pred -cCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHH-HHHHHcC------CCCCCCceEEEEcccchhc-cCC-----
Q psy7557 694 -DYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRL-NDFVSRA------SIDLKAVSFVVLDEADRML-DLG----- 759 (936)
Q Consensus 694 -~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l-~~~l~~~------~~~~~~i~~lViDEah~l~-~~~----- 759 (936)
...|+++.++.++.+........ .++|++||..-+ .|.|+.+ ....+.+.++||||+|.++ |..
T Consensus 147 ~~~lGl~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLI 224 (913)
T PRK13103 147 YEFLGLSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLI 224 (913)
T ss_pred hcccCCEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCcee
Confidence 57799999998876655443332 389999999875 2333322 1124788999999999865 210
Q ss_pred ----------CHHHHHHHhhhcC-------------------CCceEE--------------------------------
Q psy7557 760 ----------FEPQINKTSIYIN-------------------PNRQTV-------------------------------- 778 (936)
Q Consensus 760 ----------~~~~~~~i~~~~~-------------------~~~q~v-------------------------------- 778 (936)
....+..+...+. ...+.+
T Consensus 225 ISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~ 304 (913)
T PRK13103 225 ISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNL 304 (913)
T ss_pred ecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhh
Confidence 1111111111110 011111
Q ss_pred --------------------------------------------------------------------------------
Q psy7557 779 -------------------------------------------------------------------------------- 778 (936)
Q Consensus 779 -------------------------------------------------------------------------------- 778 (936)
T Consensus 305 ~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y 384 (913)
T PRK13103 305 GLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLY 384 (913)
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhc
Confidence
Q ss_pred ----EEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHH
Q psy7557 779 ----MTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKAS 854 (936)
Q Consensus 779 ----~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~ 854 (936)
+||.|.......+..-|..+-+. +... .+....-....++....+|...+.+-+......+.|+||-+.|...
T Consensus 385 ~kLsGMTGTa~te~~Ef~~iY~l~Vv~--IPTn-kP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~ 461 (913)
T PRK13103 385 NKLSGMTGTADTEAFEFRQIYGLDVVV--IPPN-KPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIET 461 (913)
T ss_pred chhccCCCCCHHHHHHHHHHhCCCEEE--CCCC-CCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHH
Confidence 12222111111111111111000 0000 0000001112356667788888888888877889999999999999
Q ss_pred HHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcC-CCcEEEecccCccCCCCC------------------------
Q psy7557 855 VSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSG-YARICVATDVASRGLDVP------------------------ 909 (936)
Q Consensus 855 ~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g-~~~vLVaT~~~~~Gidip------------------------ 909 (936)
.+.++..|...+++.-.+++.-...+-..+- ..| .-.|-|||+.++||-||.
T Consensus 462 SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~ 538 (913)
T PRK13103 462 SEHMSNLLKKEGIEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIK 538 (913)
T ss_pred HHHHHHHHHHcCCcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHH
Confidence 9999999999998877777753322222222 344 357999999999999994
Q ss_pred -------------CCCEEEEccCCCChhhhHhhhhhccC
Q psy7557 910 -------------DLTHVINYDFPSHIEEYVHRVGRTGE 935 (936)
Q Consensus 910 -------------~v~~VI~~d~p~s~~~yiqr~GRaGR 935 (936)
+=-+||-...|.|..-=-|-.|||||
T Consensus 539 ~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGR 577 (913)
T PRK13103 539 ADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGR 577 (913)
T ss_pred HHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhcccccc
Confidence 12378888889888888899999999
No 260
>KOG0925|consensus
Probab=99.60 E-value=3.2e-14 Score=149.41 Aligned_cols=322 Identities=19% Similarity=0.215 Sum_probs=188.6
Q ss_pred cCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHH
Q psy7557 82 QHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRE 161 (936)
Q Consensus 82 ~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~ 161 (936)
+.++...+.|++..----...+.+-+..+.+++-++++|.||||||. .+|-+...... .....+...-|.|.
T Consensus 31 p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKtt--QiPq~~~~~~~------~~~~~v~CTQprrv 102 (699)
T KOG0925|consen 31 PYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTT--QIPQFVLEYEL------SHLTGVACTQPRRV 102 (699)
T ss_pred cCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccc--cCcHHHHHHHH------hhccceeecCchHH
Confidence 44555555565542222244444555666677888999999999997 45543222111 11245788899999
Q ss_pred HHHHHHHHHHhccCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchh-hhcCC-
Q psy7557 162 LATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADR-MLDLG- 239 (936)
Q Consensus 162 La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~-l~~~~- 239 (936)
-|.+++.++..- ..+..+.-.|-.-..+... ...+-+-++|.+.|++-.-.. ..+.+.+.+|+||||. -+..+
T Consensus 103 aamsva~RVadE--MDv~lG~EVGysIrfEdC~--~~~T~Lky~tDgmLlrEams~-p~l~~y~viiLDeahERtlATDi 177 (699)
T KOG0925|consen 103 AAMSVAQRVADE--MDVTLGEEVGYSIRFEDCT--SPNTLLKYCTDGMLLREAMSD-PLLGRYGVIILDEAHERTLATDI 177 (699)
T ss_pred HHHHHHHHHHHH--hccccchhccccccccccC--ChhHHHHHhcchHHHHHHhhC-cccccccEEEechhhhhhHHHHH
Confidence 999988877651 1222222222111111000 000112245655554433222 2378899999999994 22111
Q ss_pred CHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHH-Hh-
Q psy7557 240 FEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFF-DN- 317 (936)
Q Consensus 240 ~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l-~~- 317 (936)
....++.+.. -+++..++.+|||+. ....+.|+.++..+.+.. .+.+.-.+..-.+.+-.+..+..+ .-
T Consensus 178 LmGllk~v~~-~rpdLk~vvmSatl~---a~Kfq~yf~n~Pll~vpg-----~~PvEi~Yt~e~erDylEaairtV~qih 248 (699)
T KOG0925|consen 178 LMGLLKEVVR-NRPDLKLVVMSATLD---AEKFQRYFGNAPLLAVPG-----THPVEIFYTPEPERDYLEAAIRTVLQIH 248 (699)
T ss_pred HHHHHHHHHh-hCCCceEEEeecccc---hHHHHHHhCCCCeeecCC-----CCceEEEecCCCChhHHHHHHHHHHHHH
Confidence 1122223322 346899999999974 234455666665565543 223333222222222233222222 11
Q ss_pred ccCCCCcEEEEeCchHHHHHHHHHhhhc---------CCceeeecCCCCHHHHHHHHHHhh---cC--CcEEEEEecccc
Q psy7557 318 MDEERDKVMVFMGRKASVSAMSSDLACQ---------YRKSCSLYGDLSQEDREIALEDIT---SG--YARICVATDVAS 383 (936)
Q Consensus 318 ~~~~~~~~iVF~~~~~~~~~l~~~L~~~---------~~~~~~~h~~~~~~~R~~~~~~f~---~g--~~~vLvaT~~~~ 383 (936)
+.+..+-++||.....+.+..++.+... ..++..+| +.+...+++-.. +| ..+|+|+|++++
T Consensus 249 ~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniae 324 (699)
T KOG0925|consen 249 MCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAE 324 (699)
T ss_pred hccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchh
Confidence 1355789999999999888888777632 24566677 333333332221 12 347999999999
Q ss_pred cCCCCCCCcEEEEecC------------------CCCccccccCCCCcccCCCceeEEEEecccC
Q psy7557 384 RGLDVPDLTHVINYDF------------------PSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430 (936)
Q Consensus 384 ~GiDip~v~~VI~~d~------------------p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~ 430 (936)
..+-+++|.+||.-++ |-|..+-.||.|||||. ++|.|+.++++.-
T Consensus 325 tsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~~ 388 (699)
T KOG0925|consen 325 TSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEA 388 (699)
T ss_pred eeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHHh
Confidence 9999999999996554 45777889999999998 6899999999764
No 261
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.59 E-value=1.8e-13 Score=168.06 Aligned_cols=109 Identities=14% Similarity=0.177 Sum_probs=80.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHhhhcCC--ceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCC--cEEEE
Q psy7557 321 ERDKVMVFMGRKASVSAMSSDLACQYR--KSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDL--THVIN 396 (936)
Q Consensus 321 ~~~~~iVF~~~~~~~~~l~~~L~~~~~--~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v--~~VI~ 396 (936)
.+++++||++|......+++.|..... ....+.-+++...|..+++.|+.++-.||++|+.+.+|||+|+- ++||.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 467999999999999999999875432 12223334544568899999999988999999999999999974 78888
Q ss_pred ecCCC-Cc-----------------------------cccccCCCCcccCCCceeEEEEeccc
Q psy7557 397 YDFPS-HI-----------------------------EEYVHRVGRTGRAGKSGESITLMTRK 429 (936)
Q Consensus 397 ~d~p~-s~-----------------------------~~y~qr~GRagR~g~~g~~~~~~~~~ 429 (936)
..+|- ++ ..+.|-+||.=|....--++++++..
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R 893 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRR 893 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCc
Confidence 88763 11 22367788888886553355555544
No 262
>COG4889 Predicted helicase [General function prediction only]
Probab=99.59 E-value=7.1e-15 Score=163.53 Aligned_cols=309 Identities=18% Similarity=0.197 Sum_probs=182.8
Q ss_pred CCCCcHHHHHHHHhhhcC----CcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHH
Q psy7557 616 FTTPSPIQAQAWPILMSG----HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVN 691 (936)
Q Consensus 616 ~~~p~~iQ~~ai~~~l~g----~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~ 691 (936)
=.+|+|+|+.|+..+..| ..-=+++.+|+|||+..+- +.+.+ ...++|+++|+.+|..|..+.+.
T Consensus 159 ~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEal----------a~~~iL~LvPSIsLLsQTlrew~ 227 (1518)
T COG4889 159 PKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEAL----------AAARILFLVPSISLLSQTLREWT 227 (1518)
T ss_pred CCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHH----------hhhheEeecchHHHHHHHHHHHh
Confidence 358999999999998865 2344567789999998653 33333 23689999999999999988888
Q ss_pred hccCCCCEEEEEECCccchHH--------------------HHH-----HhcCceEEEeCchHHHHHHHcCCCCCCCceE
Q psy7557 692 KIDYKGLKAVCVYGGKELEPQ--------------------LEK-----IREGCHILIATPGRLNDFVSRASIDLKAVSF 746 (936)
Q Consensus 692 ~~~~~~~~~~~~~gg~~~~~~--------------------~~~-----l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~ 746 (936)
.-....++...+++....... ... -.++--||++|.+.+..+-.--..-+..+++
T Consensus 228 ~~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDl 307 (1518)
T COG4889 228 AQKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDL 307 (1518)
T ss_pred hccCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccE
Confidence 765566666666654322211 011 1123568999998886655544556888999
Q ss_pred EEEcccchhccCCCHH----HHHHHhhhcC-CCceEEEEEecCC---hHHHHHH--------------------------
Q psy7557 747 VVLDEADRMLDLGFEP----QINKTSIYIN-PNRQTVMTSATWN---KDVQRVA-------------------------- 792 (936)
Q Consensus 747 lViDEah~l~~~~~~~----~~~~i~~~~~-~~~q~v~~SAT~~---~~~~~~~-------------------------- 792 (936)
||.||||+........ .+.++..... +....+-++||+. .+...-+
T Consensus 308 iicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl~Fg 387 (1518)
T COG4889 308 IICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHRLGFG 387 (1518)
T ss_pred EEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhcccHH
Confidence 9999999865322111 0001100000 1123356677742 1111111
Q ss_pred ----HHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHH-------HHHhcc------------CCCCcEEEEc
Q psy7557 793 ----KKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLME-------FFDNMD------------EERDKVMVFM 849 (936)
Q Consensus 793 ----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~-------~l~~~~------------~~~~~~iIF~ 849 (936)
+.++.+...+..................-.......+..-. +.+... .+..+.|-||
T Consensus 388 eAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~ 467 (1518)
T COG4889 388 EAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFA 467 (1518)
T ss_pred HHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHHHHH
Confidence 11111111111100000000000000000000111111111 111110 0123678899
Q ss_pred CChHHHHHHHHHHHh-------------cCCceEE--EeCCCCHHHHHHHHH---HhhcCCCcEEEecccCccCCCCCCC
Q psy7557 850 GRKASVSAMSSDLAC-------------QYRKSCS--LYGDLSQEDREIALE---DITSGYARICVATDVASRGLDVPDL 911 (936)
Q Consensus 850 ~s~~~~~~l~~~L~~-------------~~~~~~~--~h~~l~~~~R~~~~~---~F~~g~~~vLVaT~~~~~Gidip~v 911 (936)
.+.++...++..+.. .+..+.+ ..|.|...+|...++ .|...+++||-....+++|+|+|..
T Consensus 468 k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaL 547 (1518)
T COG4889 468 KDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPAL 547 (1518)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCcccc
Confidence 999888877776642 2333444 458899999965554 3567889999999999999999999
Q ss_pred CEEEEccCCCChhhhHhhhhhccC
Q psy7557 912 THVINYDFPSHIEEYVHRVGRTGE 935 (936)
Q Consensus 912 ~~VI~~d~p~s~~~yiqr~GRaGR 935 (936)
+.||.+++-.+..+.+|-+||..|
T Consensus 548 DsViFf~pr~smVDIVQaVGRVMR 571 (1518)
T COG4889 548 DSVIFFDPRSSMVDIVQAVGRVMR 571 (1518)
T ss_pred ceEEEecCchhHHHHHHHHHHHHH
Confidence 999999999999999999999987
No 263
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.59 E-value=2.6e-14 Score=136.45 Aligned_cols=144 Identities=37% Similarity=0.517 Sum_probs=110.9
Q ss_pred CcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhccCCCCEEEEEECCccchHHH
Q psy7557 634 HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQL 713 (936)
Q Consensus 634 ~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 713 (936)
+++++.+|||+|||..++.++...... ...++++|++|++.|+.|..+.+..+...+..+..+.++.......
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~-------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS-------LKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE 73 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc-------ccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH
Confidence 468999999999999988777765432 2467899999999999999998888643256777777776665555
Q ss_pred HHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHHHhhhcCCCceEEEEEecC
Q psy7557 714 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 784 (936)
Q Consensus 714 ~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~v~~SAT~ 784 (936)
.....+.+|+++|++.+..............+++|+||+|.+....+...............+++++|||+
T Consensus 74 ~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 74 KLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 44556789999999999888877665567889999999999877655544323334456778999999995
No 264
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.59 E-value=2.8e-14 Score=136.25 Aligned_cols=144 Identities=38% Similarity=0.520 Sum_probs=110.5
Q ss_pred CcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhccCCCCEEEEEeCCccchHHH
Q psy7557 114 HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQL 193 (936)
Q Consensus 114 ~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 193 (936)
+++++.+|||+|||.+++.++...... ...++++|++|++.|+.|+.+.+......+..+..+.++.......
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~-------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS-------LKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE 73 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc-------ccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH
Confidence 468999999999999988776655432 2457899999999999999999888543267777777776666555
Q ss_pred HHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHHHhhcCCCCcEEEEEecc
Q psy7557 194 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 264 (936)
Q Consensus 194 ~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~ 264 (936)
.....+.+|+++|++.+...+..........+++|+||+|.+....................+++++|||+
T Consensus 74 ~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 74 KLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 55556799999999999887776655567789999999999887665554323334456778999999995
No 265
>KOG0385|consensus
Probab=99.58 E-value=8.4e-14 Score=154.07 Aligned_cols=316 Identities=19% Similarity=0.217 Sum_probs=210.8
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhc
Q psy7557 98 TPSPIQAQAWPILM----SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 173 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~----~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 173 (936)
.++++|.+.+.-+. +|-|.|+.-.-|-|||+-. |..+.++.... ...|| -||++|...|. .+.+++++|
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~----~~~GP-fLVi~P~StL~-NW~~Ef~rf 239 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRK----GIPGP-FLVIAPKSTLD-NWMNEFKRF 239 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhc----CCCCC-eEEEeeHhhHH-HHHHHHHHh
Confidence 68999999887654 5788999999999999853 23333332211 13455 58999987774 478888887
Q ss_pred cCCCCEEEEEeCCccchHHHH-Hh--hcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHHHhh
Q psy7557 174 DYKGLKAVCVYGGKEIEPQLE-KI--REGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIY 250 (936)
Q Consensus 174 ~~~~~~~~~~~gg~~~~~~~~-~~--~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~ 250 (936)
+ .++++++++|+..-..... .+ ....+|+|||-+..+.- +..+.--..+|+|||||||+-... ..+.+++..
T Consensus 240 ~-P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~~--s~L~~~lr~ 314 (971)
T KOG0385|consen 240 T-PSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNEK--SKLSKILRE 314 (971)
T ss_pred C-CCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcchh--hHHHHHHHH
Confidence 5 5788999988864333322 11 12479999999877543 112222346899999999986543 122233333
Q ss_pred cCCCCcEEEEEeccchH-H---HHHHHHh---------------------------------------------------
Q psy7557 251 INPNRQTVMTSATWNKD-V---QRVAKKY--------------------------------------------------- 275 (936)
Q Consensus 251 ~~~~~q~~~~SAT~~~~-~---~~~~~~~--------------------------------------------------- 275 (936)
+... ..+++|.|+-.+ + ..++...
T Consensus 315 f~~~-nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLp 393 (971)
T KOG0385|consen 315 FKTD-NRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLP 393 (971)
T ss_pred hccc-ceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCC
Confidence 3322 235556663211 0 0010000
Q ss_pred ---------------------------------------------------cCCCEEEEeCCCCcccCCceEEEEEEeCc
Q psy7557 276 ---------------------------------------------------MVNPVKVNVGSLDLAATHTVTQKIIILDE 304 (936)
Q Consensus 276 ---------------------------------------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 304 (936)
...|..+.. .+.. ......-..+..
T Consensus 394 pKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g--~ePg--~pyttdehLv~n 469 (971)
T KOG0385|consen 394 PKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDG--AEPG--PPYTTDEHLVTN 469 (971)
T ss_pred CcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCC--CCCC--CCCCcchHHHhc
Confidence 011111100 0000 000000112233
Q ss_pred hhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcC---CcEEEEEecc
Q psy7557 305 DEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSG---YARICVATDV 381 (936)
Q Consensus 305 ~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g---~~~vLvaT~~ 381 (936)
..|...|-++|..+...+++||||..--...+-+-.+..-+++..+-+.|.++.++|...++.|... +.-.|++|-+
T Consensus 470 SGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRA 549 (971)
T KOG0385|consen 470 SGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRA 549 (971)
T ss_pred CcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccc
Confidence 4566667777777778899999999988888888888888999999999999999999999999754 3457899999
Q ss_pred cccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCce--eEEEEecccC
Q psy7557 382 ASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSG--ESITLMTRKD 430 (936)
Q Consensus 382 ~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g--~~~~~~~~~~ 430 (936)
.+-|||+-.+++||.||.-+++..=+|-.-||-|-|+.. .++-|++.+.
T Consensus 550 GGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitent 600 (971)
T KOG0385|consen 550 GGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENT 600 (971)
T ss_pred cccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccch
Confidence 999999999999999999999999999999999998775 4555666654
No 266
>KOG0953|consensus
Probab=99.57 E-value=2.2e-14 Score=153.32 Aligned_cols=263 Identities=18% Similarity=0.209 Sum_probs=171.4
Q ss_pred EEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhccCCCCEEEEEeCCccchHHHHH
Q psy7557 116 MIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEK 195 (936)
Q Consensus 116 ~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 195 (936)
++-+|||.||||.- +++++.. ....+|--|.|-||.++++.+++. |+.+-.++|.......-.
T Consensus 194 i~H~GPTNSGKTy~----ALqrl~~---------aksGvycGPLrLLA~EV~~r~na~---gipCdL~TGeE~~~~~~~- 256 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYR----ALQRLKS---------AKSGVYCGPLRLLAHEVYDRLNAL---GIPCDLLTGEERRFVLDN- 256 (700)
T ss_pred EEEeCCCCCchhHH----HHHHHhh---------hccceecchHHHHHHHHHHHhhhc---CCCccccccceeeecCCC-
Confidence 45569999999976 4455532 345799999999999999999874 677777776432221110
Q ss_pred hhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHHH-hhcCCCCcEEEEEeccchHHHHHHHH
Q psy7557 196 IREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTS-IYINPNRQTVMTSATWNKDVQRVAKK 274 (936)
Q Consensus 196 ~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~-~~~~~~~q~~~~SAT~~~~~~~~~~~ 274 (936)
-+.++.+-+|.|+.. .-..++..||||++.|-|...+-.+.+.+ -.......+.+= +.+.++++.
T Consensus 257 -~~~a~hvScTVEM~s--------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGe-----psvldlV~~ 322 (700)
T KOG0953|consen 257 -GNPAQHVSCTVEMVS--------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGE-----PSVLDLVRK 322 (700)
T ss_pred -CCcccceEEEEEEee--------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCC-----chHHHHHHH
Confidence 112567778877662 13457899999999998766544444322 211222222221 233444444
Q ss_pred hc---CCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCc-ee
Q psy7557 275 YM---VNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRK-SC 350 (936)
Q Consensus 275 ~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~-~~ 350 (936)
.+ .+-+.+... ... ..-.-.+.+..-+.+. .+ +-++ .|-+++....+...+...+.. ++
T Consensus 323 i~k~TGd~vev~~Y-------eRl-------~pL~v~~~~~~sl~nl-k~-GDCv-V~FSkk~I~~~k~kIE~~g~~k~a 385 (700)
T KOG0953|consen 323 ILKMTGDDVEVREY-------ERL-------SPLVVEETALGSLSNL-KP-GDCV-VAFSKKDIFTVKKKIEKAGNHKCA 385 (700)
T ss_pred HHhhcCCeeEEEee-------ccc-------CcceehhhhhhhhccC-CC-CCeE-EEeehhhHHHHHHHHHHhcCcceE
Confidence 33 222222111 111 1111111233444444 22 3333 345778888889999888876 99
Q ss_pred eecCCCCHHHHHHHHHHhhc--CCcEEEEEecccccCCCCCCCcEEEEecCC---------CCccccccCCCCcccCCCc
Q psy7557 351 SLYGDLSQEDREIALEDITS--GYARICVATDVASRGLDVPDLTHVINYDFP---------SHIEEYVHRVGRTGRAGKS 419 (936)
Q Consensus 351 ~~h~~~~~~~R~~~~~~f~~--g~~~vLvaT~~~~~GiDip~v~~VI~~d~p---------~s~~~y~qr~GRagR~g~~ 419 (936)
+++|+++++.|.+--..|.+ ++++||||||+.++|+|+ +++-||.|++- -+..+..|..|||||.|..
T Consensus 386 VIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~ 464 (700)
T KOG0953|consen 386 VIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSK 464 (700)
T ss_pred EEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccC
Confidence 99999999999999999987 999999999999999999 78999988774 3566789999999999643
Q ss_pred ---eeEEEEec
Q psy7557 420 ---GESITLMT 427 (936)
Q Consensus 420 ---g~~~~~~~ 427 (936)
|...++..
T Consensus 465 ~~~G~vTtl~~ 475 (700)
T KOG0953|consen 465 YPQGEVTTLHS 475 (700)
T ss_pred CcCceEEEeeH
Confidence 65555543
No 267
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.55 E-value=3.5e-13 Score=154.68 Aligned_cols=302 Identities=18% Similarity=0.218 Sum_probs=196.4
Q ss_pred CCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc
Q psy7557 614 LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693 (936)
Q Consensus 614 ~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 693 (936)
+|. .|+++|.-+--.+..|+ |+...||-|||+++.+|++...+ .|..|=|++..--||..=.+.+..+
T Consensus 75 lG~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL---------~GkgVhVVTvNdYLA~RDae~mg~v 142 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNAL---------TGKGVIVSTVNEYLAERDAEEMGKV 142 (925)
T ss_pred hCC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHh---------cCCceEEEecchhhhhhhHHHHHHH
Confidence 576 89999988877766664 79999999999999999876553 3666788888888987655555553
Q ss_pred -cCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHH-HHHHcC------CCCCCCceEEEEcccchhc-cCC-----
Q psy7557 694 -DYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLN-DFVSRA------SIDLKAVSFVVLDEADRML-DLG----- 759 (936)
Q Consensus 694 -~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~-~~l~~~------~~~~~~i~~lViDEah~l~-~~~----- 759 (936)
...|+.+.++..+.+....... -.|||+.+|...|- +.++.+ ....+.+.+.|+||+|.++ |..
T Consensus 143 y~fLGLsvG~i~~~~~~~~rr~a--Y~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLI 220 (925)
T PRK12903 143 FNFLGLSVGINKANMDPNLKREA--YACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLI 220 (925)
T ss_pred HHHhCCceeeeCCCCChHHHHHh--ccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCccc
Confidence 5678999988877655543332 35899999998763 344322 1124678899999999765 211
Q ss_pred ----------CHHHHHHHhhhcCC-------CceEE--------------------------------------------
Q psy7557 760 ----------FEPQINKTSIYINP-------NRQTV-------------------------------------------- 778 (936)
Q Consensus 760 ----------~~~~~~~i~~~~~~-------~~q~v-------------------------------------------- 778 (936)
++..+..+...+.+ ..+.+
T Consensus 221 ISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd 300 (925)
T PRK12903 221 ISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKED 300 (925)
T ss_pred ccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcC
Confidence 11122222222211 11122
Q ss_pred -----------------------------------------------------------------EEEecCChHHHHHHH
Q psy7557 779 -----------------------------------------------------------------MTSATWNKDVQRVAK 793 (936)
Q Consensus 779 -----------------------------------------------------------------~~SAT~~~~~~~~~~ 793 (936)
+||+|.......+.+
T Consensus 301 ~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~ 380 (925)
T PRK12903 301 VEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFID 380 (925)
T ss_pred CceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHH
Confidence 222222111111221
Q ss_pred HhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEe
Q psy7557 794 KYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLY 873 (936)
Q Consensus 794 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h 873 (936)
-|..+-+. +... .+....-....++.....|...+.+.+......+.|+||.|.|....+.++..|...+++...++
T Consensus 381 iY~l~Vv~--IPTn-kP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLN 457 (925)
T PRK12903 381 IYNMRVNV--VPTN-KPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLN 457 (925)
T ss_pred HhCCCEEE--CCCC-CCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeec
Confidence 11111110 0000 00000001113456677888888887777767889999999999999999999999999988888
Q ss_pred CCCCHHHHHHHHHHhhcC-CCcEEEecccCccCCCCCCCC--------EEEEccCCCChhhhHhhhhhccC
Q psy7557 874 GDLSQEDREIALEDITSG-YARICVATDVASRGLDVPDLT--------HVINYDFPSHIEEYVHRVGRTGE 935 (936)
Q Consensus 874 ~~l~~~~R~~~~~~F~~g-~~~vLVaT~~~~~Gidip~v~--------~VI~~d~p~s~~~yiqr~GRaGR 935 (936)
+.- .+++.-+-. ..| .-.|.|||+.++||.||.--. |||....|.|..-=-|-.|||||
T Consensus 458 Ak~--~e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGR 525 (925)
T PRK12903 458 AKQ--NAREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGR 525 (925)
T ss_pred ccc--hhhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhccccc
Confidence 763 333332222 445 457999999999999996322 89999999998888899999999
No 268
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.55 E-value=2.2e-12 Score=148.21 Aligned_cols=79 Identities=16% Similarity=0.147 Sum_probs=62.9
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhc----CCCcEEEecccCccCCCC--------
Q psy7557 841 ERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITS----GYARICVATDVASRGLDV-------- 908 (936)
Q Consensus 841 ~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~----g~~~vLVaT~~~~~Gidi-------- 908 (936)
..+.++|.+.|.+..+.++..|.....-...+.|+.+ .|...++.|+. |...||++|+.+.+|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 4678999999999999999999765444556666543 35668888887 478999999999999999
Q ss_pred --CCCCEEEEccCCC
Q psy7557 909 --PDLTHVINYDFPS 921 (936)
Q Consensus 909 --p~v~~VI~~d~p~ 921 (936)
..+++||...+|.
T Consensus 547 ~G~~Ls~ViI~kLPF 561 (636)
T TIGR03117 547 KDNLLTDLIITCAPF 561 (636)
T ss_pred CCCcccEEEEEeCCC
Confidence 2488899887773
No 269
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.54 E-value=1e-12 Score=161.48 Aligned_cols=80 Identities=14% Similarity=0.166 Sum_probs=63.9
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhcCC--ceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCC--CEEEE
Q psy7557 841 ERDKVMVFMGRKASVSAMSSDLACQYR--KSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDL--THVIN 916 (936)
Q Consensus 841 ~~~~~iIF~~s~~~~~~l~~~L~~~~~--~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v--~~VI~ 916 (936)
..++++||++|.+..+.++..|..... +...+.-+++...|..+++.|++++-.||++|+.+.+|||+|+- ++||.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 457899999999999999999875432 12233334555568999999999988999999999999999974 67888
Q ss_pred ccCC
Q psy7557 917 YDFP 920 (936)
Q Consensus 917 ~d~p 920 (936)
..+|
T Consensus 831 ~kLP 834 (928)
T PRK08074 831 VRLP 834 (928)
T ss_pred ecCC
Confidence 7766
No 270
>KOG0385|consensus
Probab=99.53 E-value=6.5e-13 Score=147.15 Aligned_cols=305 Identities=18% Similarity=0.222 Sum_probs=197.9
Q ss_pred CCcHHHHHHHHhhh----cCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc
Q psy7557 618 TPSPIQAQAWPILM----SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693 (936)
Q Consensus 618 ~p~~iQ~~ai~~~l----~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 693 (936)
.+++||.+.+..+. +|-|.|+.-.-|-|||+-. |+++.++.... .-+|| -||+||...|. .+.+.+++|
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~----~~~GP-fLVi~P~StL~-NW~~Ef~rf 239 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRK----GIPGP-FLVIAPKSTLD-NWMNEFKRF 239 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhc----CCCCC-eEEEeeHhhHH-HHHHHHHHh
Confidence 78999999887665 5779999999999999853 23333332211 12455 49999988874 478888888
Q ss_pred cCCCCEEEEEECCccchHHH-HH-H-hcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHHHhhh
Q psy7557 694 DYKGLKAVCVYGGKELEPQL-EK-I-REGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIY 770 (936)
Q Consensus 694 ~~~~~~~~~~~gg~~~~~~~-~~-l-~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~ 770 (936)
. +++++++.+|...-.... +. + ....+|+|+|.|....- ...+.--.++|+||||||++-... ..+..++..
T Consensus 240 ~-P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~~--s~L~~~lr~ 314 (971)
T KOG0385|consen 240 T-PSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNEK--SKLSKILRE 314 (971)
T ss_pred C-CCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcchh--hHHHHHHHH
Confidence 4 678899999865322221 11 1 12479999999877542 112223356899999999986542 233345555
Q ss_pred cCCCceEEEEEecCChH-HH------------------HHHHHhcC----------------------------------
Q psy7557 771 INPNRQTVMTSATWNKD-VQ------------------RVAKKYMV---------------------------------- 797 (936)
Q Consensus 771 ~~~~~q~v~~SAT~~~~-~~------------------~~~~~~~~---------------------------------- 797 (936)
+....+ +++|.|+-.+ +. .+-.||..
T Consensus 315 f~~~nr-LLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLp 393 (971)
T KOG0385|consen 315 FKTDNR-LLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLP 393 (971)
T ss_pred hcccce-eEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCC
Confidence 543333 5666663211 11 11111110
Q ss_pred CC--eEEEeCCCC-------------c-----------------------ccC-----------CceEEEEEEcCcchhH
Q psy7557 798 NP--VKVNVGSLD-------------L-----------------------AAT-----------HTVTQKIIILDEDEKK 828 (936)
Q Consensus 798 ~~--~~i~~~~~~-------------~-----------------------~~~-----------~~~~~~~~~~~~~~k~ 828 (936)
.+ +.+.++-.. . ... ......-..+....|+
T Consensus 394 pKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm 473 (971)
T KOG0385|consen 394 PKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKM 473 (971)
T ss_pred CcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcce
Confidence 00 011110000 0 000 0000001123345677
Q ss_pred HHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCC---CcEEEecccCccC
Q psy7557 829 DWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGY---ARICVATDVASRG 905 (936)
Q Consensus 829 ~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~---~~vLVaT~~~~~G 905 (936)
..|-+++..+...+.+||||..-....+-+-.+..-.++..+-+.|.++.++|...++.|.... .-.|++|-+.+-|
T Consensus 474 ~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLG 553 (971)
T KOG0385|consen 474 LVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLG 553 (971)
T ss_pred ehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccc
Confidence 7788888888888999999988777778888887788999999999999999999999997654 4578999999999
Q ss_pred CCCCCCCEEEEccCCCChhhhHhhhhhccC
Q psy7557 906 LDVPDLTHVINYDFPSHIEEYVHRVGRTGE 935 (936)
Q Consensus 906 idip~v~~VI~~d~p~s~~~yiqr~GRaGR 935 (936)
||+-..++||.||--.++..=+|-.-||-|
T Consensus 554 INL~aADtVIlyDSDWNPQ~DLQAmDRaHR 583 (971)
T KOG0385|consen 554 INLTAADTVILYDSDWNPQVDLQAMDRAHR 583 (971)
T ss_pred cccccccEEEEecCCCCchhhhHHHHHHHh
Confidence 999999999999988776665555555443
No 271
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.52 E-value=6.3e-14 Score=140.55 Aligned_cols=151 Identities=19% Similarity=0.141 Sum_probs=101.8
Q ss_pred CCcHHHHHHHHhhhc-------CCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHH
Q psy7557 618 TPSPIQAQAWPILMS-------GHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREV 690 (936)
Q Consensus 618 ~p~~iQ~~ai~~~l~-------g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~ 690 (936)
+|+|+|.+|+..+.. .+++++.+|||||||.+++..+.... . +++|++|+..|+.|+.+.+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~---------~---~~l~~~p~~~l~~Q~~~~~ 70 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA---------R---KVLIVAPNISLLEQWYDEF 70 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH---------C---EEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc---------c---ceeEecCHHHHHHHHHHHH
Confidence 579999999998883 58999999999999998875554433 1 8999999999999999999
Q ss_pred HhccCCCCEEEEE------------ECCccchHHHHHHhcCceEEEeCchHHHHHHHcCC-----------CCCCCceEE
Q psy7557 691 NKIDYKGLKAVCV------------YGGKELEPQLEKIREGCHILIATPGRLNDFVSRAS-----------IDLKAVSFV 747 (936)
Q Consensus 691 ~~~~~~~~~~~~~------------~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~-----------~~~~~i~~l 747 (936)
..+.......... ............-....+++++|...|........ ......++|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 150 (184)
T PF04851_consen 71 DDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLV 150 (184)
T ss_dssp HHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEE
T ss_pred HHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEE
Confidence 7664333222111 11111112222223457899999999987765321 223567899
Q ss_pred EEcccchhccCCCHHHHHHHhhhcCCCceEEEEEecCC
Q psy7557 748 VLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWN 785 (936)
Q Consensus 748 ViDEah~l~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~ 785 (936)
|+||||++....- +..+.. .+...+++||||++
T Consensus 151 I~DEaH~~~~~~~---~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 151 IIDEAHHYPSDSS---YREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp EEETGGCTHHHHH---HHHHHH--SSCCEEEEEESS-S
T ss_pred EEehhhhcCCHHH---HHHHHc--CCCCeEEEEEeCcc
Confidence 9999999765431 333333 56678999999975
No 272
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.52 E-value=7.7e-14 Score=139.92 Aligned_cols=151 Identities=20% Similarity=0.143 Sum_probs=101.9
Q ss_pred CCcHHHHHHHHHHhc-------CCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q psy7557 98 TPSPIQAQAWPILMS-------GHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREV 170 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~~-------g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~ 170 (936)
+|+++|.+|+..+.. .+++++.+|||||||.+++..+.... . +++|++|+..|+.|+.+.+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~---------~---~~l~~~p~~~l~~Q~~~~~ 70 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA---------R---KVLIVAPNISLLEQWYDEF 70 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH---------C---EEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc---------c---ceeEecCHHHHHHHHHHHH
Confidence 689999999998873 58999999999999999875444332 1 8999999999999999999
Q ss_pred HhccCCCCEEEEE------------eCCccchHHHHHhhcCCcEEEeCCchhHHHHHcC-----------CcCCCCceEE
Q psy7557 171 NKIDYKGLKAVCV------------YGGKEIEPQLEKIREGCHILIATPGRLNDFVSRA-----------SIDLKAVSFV 227 (936)
Q Consensus 171 ~~~~~~~~~~~~~------------~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-----------~~~~~~~~~l 227 (936)
..+.......... .................+++++|..+|....... .......++|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 150 (184)
T PF04851_consen 71 DDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLV 150 (184)
T ss_dssp HHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEE
T ss_pred HHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEE
Confidence 7654332222111 1111112222233345789999999998776432 1234567899
Q ss_pred EEccchhhhcCCCHHHHHHHHhhcCCCCcEEEEEeccc
Q psy7557 228 VLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWN 265 (936)
Q Consensus 228 ViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~ 265 (936)
|+||||++....- .+.+.. .+...+++||||++
T Consensus 151 I~DEaH~~~~~~~---~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 151 IIDEAHHYPSDSS---YREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp EEETGGCTHHHHH---HHHHHH--SSCCEEEEEESS-S
T ss_pred EEehhhhcCCHHH---HHHHHc--CCCCeEEEEEeCcc
Confidence 9999999754331 344444 55678999999975
No 273
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.52 E-value=3.6e-13 Score=156.68 Aligned_cols=129 Identities=23% Similarity=0.256 Sum_probs=107.6
Q ss_pred EEeCchhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEe
Q psy7557 300 IILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVAT 379 (936)
Q Consensus 300 ~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT 379 (936)
++....+|...+.+.+......+.|+||-+.|....+.+++.|...+++...+++.....+-.-+-+.=+.| .|-|||
T Consensus 606 vy~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIAT 683 (1112)
T PRK12901 606 VYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIAT 683 (1112)
T ss_pred EecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCC--cEEEec
Confidence 455667888888888888778899999999999999999999999999988887765544444444444444 489999
Q ss_pred cccccCCCCC--------CCcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccC
Q psy7557 380 DVASRGLDVP--------DLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430 (936)
Q Consensus 380 ~~~~~GiDip--------~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~ 430 (936)
+.++||.||. +==+||--..+.|..---|-.|||||-|.+|.+-.|++-.|
T Consensus 684 NMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 684 NMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred cCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 9999999997 34578888899999999999999999999999999999766
No 274
>KOG0953|consensus
Probab=99.51 E-value=1.8e-13 Score=146.54 Aligned_cols=255 Identities=17% Similarity=0.183 Sum_probs=163.9
Q ss_pred CCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhccCCCCEEEEEECCccchHH
Q psy7557 633 GHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQ 712 (936)
Q Consensus 633 g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~ 712 (936)
.+-++-++||.||||.-++ +++. .....+|--|.|-||.+++++++.. |+.+..++|.......
T Consensus 191 RkIi~H~GPTNSGKTy~AL----qrl~---------~aksGvycGPLrLLA~EV~~r~na~---gipCdL~TGeE~~~~~ 254 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYRAL----QRLK---------SAKSGVYCGPLRLLAHEVYDRLNAL---GIPCDLLTGEERRFVL 254 (700)
T ss_pred heEEEEeCCCCCchhHHHH----HHHh---------hhccceecchHHHHHHHHHHHhhhc---CCCccccccceeeecC
Confidence 3446667999999997543 4442 3456799999999999999998874 6777777775332221
Q ss_pred HHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHH-HhhhcCCCceEEEEEecCChHHHHH
Q psy7557 713 LEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINK-TSIYINPNRQTVMTSATWNKDVQRV 791 (936)
Q Consensus 713 ~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~-i~~~~~~~~q~v~~SAT~~~~~~~~ 791 (936)
-. .+.+..+-||-|+..- -..++..||||++.|-+......+.+ ++........+.+= +.+.++
T Consensus 255 ~~--~~~a~hvScTVEM~sv--------~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGe-----psvldl 319 (700)
T KOG0953|consen 255 DN--GNPAQHVSCTVEMVSV--------NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGE-----PSVLDL 319 (700)
T ss_pred CC--CCcccceEEEEEEeec--------CCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCC-----chHHHH
Confidence 10 1125677778766521 24578999999998876543333322 22222222222221 234444
Q ss_pred HHHhc---CCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCc
Q psy7557 792 AKKYM---VNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRK 868 (936)
Q Consensus 792 ~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~ 868 (936)
.+..+ .+.+.+..- .....-.-.+.+..-+.+. .++.-+ .|-|++....+...+...+..
T Consensus 320 V~~i~k~TGd~vev~~Y--------------eRl~pL~v~~~~~~sl~nl-k~GDCv--V~FSkk~I~~~k~kIE~~g~~ 382 (700)
T KOG0953|consen 320 VRKILKMTGDDVEVREY--------------ERLSPLVVEETALGSLSNL-KPGDCV--VAFSKKDIFTVKKKIEKAGNH 382 (700)
T ss_pred HHHHHhhcCCeeEEEee--------------cccCcceehhhhhhhhccC-CCCCeE--EEeehhhHHHHHHHHHHhcCc
Confidence 44443 222222110 0111101111233333444 223333 344778888888888888766
Q ss_pred -eEEEeCCCCHHHHHHHHHHhhc--CCCcEEEecccCccCCCCCCCCEEEEccCC---------CChhhhHhhhhhccCC
Q psy7557 869 -SCSLYGDLSQEDREIALEDITS--GYARICVATDVASRGLDVPDLTHVINYDFP---------SHIEEYVHRVGRTGEF 936 (936)
Q Consensus 869 -~~~~h~~l~~~~R~~~~~~F~~--g~~~vLVaT~~~~~Gidip~v~~VI~~d~p---------~s~~~yiqr~GRaGR~ 936 (936)
++.++|+++++.|.+--..|.+ +.++||||||+.++|+|+ +++-||.|++- .+..+-.|-+|||||+
T Consensus 383 k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf 461 (700)
T KOG0953|consen 383 KCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRF 461 (700)
T ss_pred ceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhccccc
Confidence 9999999999999999999987 899999999999999999 78989887753 4577789999999996
No 275
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.50 E-value=4e-14 Score=120.93 Aligned_cols=81 Identities=46% Similarity=0.673 Sum_probs=77.1
Q ss_pred HHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccC
Q psy7557 337 AMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRA 416 (936)
Q Consensus 337 ~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~ 416 (936)
.+++.|...++.+..+||+++..+|..+++.|.+|...|||+|+++++|+|+|++++||.+++|.+..+|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 45677888899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q psy7557 417 G 417 (936)
Q Consensus 417 g 417 (936)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 6
No 276
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.48 E-value=2.3e-12 Score=149.22 Aligned_cols=277 Identities=19% Similarity=0.207 Sum_probs=176.1
Q ss_pred CCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc
Q psy7557 614 LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693 (936)
Q Consensus 614 ~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 693 (936)
+|. .|++.|.-+.-.+. +.-|+.+.||.|||+++.+|++...+ .|..|-|++++..||.+-++.+..+
T Consensus 73 lG~-r~ydvQlig~l~L~--~G~IaEm~TGEGKTL~a~l~ayl~aL---------~G~~VhVvT~NdyLA~RD~e~m~pv 140 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVLN--DGKIAEMKTGEGKTLVATLPAYLNAL---------TGKGVHIVTVNDYLAKRDQEWMGQI 140 (870)
T ss_pred hCC-CCCchHhhhhHhhc--CCccccccCCCCchHHHHHHHHHHHh---------cCCceEEEeCCHHHHHHHHHHHHHH
Confidence 577 68888877654443 56899999999999999999975543 3677999999999999988888775
Q ss_pred -cCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHH-HHHHcC------CCCCCCceEEEEcccchhc-cCC-----
Q psy7557 694 -DYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLN-DFVSRA------SIDLKAVSFVVLDEADRML-DLG----- 759 (936)
Q Consensus 694 -~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~-~~l~~~------~~~~~~i~~lViDEah~l~-~~~----- 759 (936)
...|+.+.++.++.+....... -.|||+.+|...+- +.++.+ ....+.+.+.|+||+|.++ |..
T Consensus 141 y~~LGLsvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLi 218 (870)
T CHL00122 141 YRFLGLTVGLIQEGMSSEERKKN--YLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLI 218 (870)
T ss_pred HHHcCCceeeeCCCCChHHHHHh--cCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCcee
Confidence 6789999998887666543332 34899999997553 333322 1124668899999999765 210
Q ss_pred ----------CHHHHHHHhhhcCCC--------c----------------------------------------------
Q psy7557 760 ----------FEPQINKTSIYINPN--------R---------------------------------------------- 775 (936)
Q Consensus 760 ----------~~~~~~~i~~~~~~~--------~---------------------------------------------- 775 (936)
.......+...+..+ .
T Consensus 219 ISg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d 298 (870)
T CHL00122 219 ISGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKN 298 (870)
T ss_pred ccCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcC
Confidence 111111122211110 0
Q ss_pred --------------------------------------------------------------eEEEEEecCChHHHHHHH
Q psy7557 776 --------------------------------------------------------------QTVMTSATWNKDVQRVAK 793 (936)
Q Consensus 776 --------------------------------------------------------------q~v~~SAT~~~~~~~~~~ 793 (936)
.+.+||.|.......+..
T Consensus 299 ~dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~ 378 (870)
T CHL00122 299 VHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEK 378 (870)
T ss_pred CcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHH
Confidence 233333333222222222
Q ss_pred HhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEe
Q psy7557 794 KYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLY 873 (936)
Q Consensus 794 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h 873 (936)
-|..+-+. +.+.. +....-....++.....|...+.+-+......+.|+||-|.|....+.++..|...+++...++
T Consensus 379 iY~l~vv~--IPtnk-p~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLN 455 (870)
T CHL00122 379 IYNLEVVC--IPTHR-PMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLN 455 (870)
T ss_pred HhCCCEEE--CCCCC-CccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceee
Confidence 22211111 11100 0000011123455666788877777777767889999999999999999999999999999998
Q ss_pred CCCCHHHHH-HHHHHhhcC-CCcEEEecccCccCCCCC
Q psy7557 874 GDLSQEDRE-IALEDITSG-YARICVATDVASRGLDVP 909 (936)
Q Consensus 874 ~~l~~~~R~-~~~~~F~~g-~~~vLVaT~~~~~Gidip 909 (936)
+.-.+.+++ .++.. .| .-.|-|||+.++||.||.
T Consensus 456 Ak~~~~~~EA~IIA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 456 AKPENVRRESEIVAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred CCCccchhHHHHHHh--cCCCCcEEEeccccCCCcCee
Confidence 863222222 22222 33 347999999999998874
No 277
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.46 E-value=1.8e-13 Score=116.84 Aligned_cols=80 Identities=43% Similarity=0.617 Sum_probs=76.1
Q ss_pred HHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 857 AMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 857 ~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
.++..|...+..+..+||+++..+|..+++.|.++...|||+|+++++|+|+|++++||.+++|.+..+|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46677888889999999999999999999999999999999999999999999999999999999999999999999995
No 278
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.43 E-value=3.9e-11 Score=142.95 Aligned_cols=117 Identities=23% Similarity=0.355 Sum_probs=79.5
Q ss_pred HHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhh----cCCcEEEEEecccccC
Q psy7557 310 WLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDIT----SGYARICVATDVASRG 385 (936)
Q Consensus 310 ~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~----~g~~~vLvaT~~~~~G 385 (936)
.+.+.+.......+.++||++|....+.++..|..........+|. ..|..+++.|+ .|+-.||++|..+.+|
T Consensus 522 ~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EG 598 (697)
T PRK11747 522 EMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEG 598 (697)
T ss_pred HHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCC---chHHHHHHHHHHHhccCCCeEEEEecccccc
Confidence 3444443332345668999999999999999887532223344554 24677887776 4677899999999999
Q ss_pred CCCCC--CcEEEEecCCCC-c-----------------------------cccccCCCCcccCCCceeEEEEeccc
Q psy7557 386 LDVPD--LTHVINYDFPSH-I-----------------------------EEYVHRVGRTGRAGKSGESITLMTRK 429 (936)
Q Consensus 386 iDip~--v~~VI~~d~p~s-~-----------------------------~~y~qr~GRagR~g~~g~~~~~~~~~ 429 (936)
||+|+ +++||...+|.. + ..+.|-+||.=|...+--.+++++..
T Consensus 599 VD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 599 LDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred ccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 99997 788998887731 1 12357778888875543345555543
No 279
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.39 E-value=1.2e-11 Score=144.91 Aligned_cols=316 Identities=16% Similarity=0.165 Sum_probs=177.6
Q ss_pred HHHHhCCCCCCcHHHHHHHHhhhc------CCcE--EEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCH
Q psy7557 609 RQLENLSFTTPSPIQAQAWPILMS------GHDM--IGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTR 680 (936)
Q Consensus 609 ~~l~~~g~~~p~~iQ~~ai~~~l~------g~d~--i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~ 680 (936)
+.+++..-..-+.+|-.|+..+.. ..-+ +=.|.||+|||++=.=.| ..+. ....|.+..|-.-.|
T Consensus 399 k~~~~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARIm-yaLs------d~~~g~RfsiALGLR 471 (1110)
T TIGR02562 399 KYFCQRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAM-YALR------DDKQGARFAIALGLR 471 (1110)
T ss_pred hhhccCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHH-HHhC------CCCCCceEEEEcccc
Confidence 344433334557899999988763 1233 334899999998744322 2221 225567888888888
Q ss_pred HHHHHHHHHHHhc-cCCCCEEEEEECCccchHHH-------------------------------------------HHH
Q psy7557 681 ELATQIEREVNKI-DYKGLKAVCVYGGKELEPQL-------------------------------------------EKI 716 (936)
Q Consensus 681 ~La~Q~~~~~~~~-~~~~~~~~~~~gg~~~~~~~-------------------------------------------~~l 716 (936)
.|..|.-+.+++- +-..-..++++||.....-. ..+
T Consensus 472 TLTLQTGda~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l 551 (1110)
T TIGR02562 472 SLTLQTGHALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRL 551 (1110)
T ss_pred ceeccchHHHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhh
Confidence 8888887777652 22223344444442211100 001
Q ss_pred hc--------CceEEEeCchHHHHHHH--cC-CCCCC----CceEEEEcccchhccCCCHHHHHHHhhhc-CCCceEEEE
Q psy7557 717 RE--------GCHILIATPGRLNDFVS--RA-SIDLK----AVSFVVLDEADRMLDLGFEPQINKTSIYI-NPNRQTVMT 780 (936)
Q Consensus 717 ~~--------~~~IiV~Tp~~l~~~l~--~~-~~~~~----~i~~lViDEah~l~~~~~~~~~~~i~~~~-~~~~q~v~~ 780 (936)
.+ .+.|+|||+..++.... +. ...+. .=+.|||||+|-+-... ...+..++... ..+.+++++
T Consensus 552 ~~~~k~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~-~~~L~rlL~w~~~lG~~VlLm 630 (1110)
T TIGR02562 552 SLDDKEKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPED-LPALLRLVQLAGLLGSRVLLS 630 (1110)
T ss_pred ccChhhhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHH-HHHHHHHHHHHHHcCCCEEEE
Confidence 10 25899999999877652 21 11111 12569999999643222 22233333322 256789999
Q ss_pred EecCChHHHHHH-HHhc----------C---CCeEEE--e-CCCCc--------------------------c-cCCceE
Q psy7557 781 SATWNKDVQRVA-KKYM----------V---NPVKVN--V-GSLDL--------------------------A-ATHTVT 816 (936)
Q Consensus 781 SAT~~~~~~~~~-~~~~----------~---~~~~i~--~-~~~~~--------------------------~-~~~~~~ 816 (936)
|||+|+.....+ ..|. . .|..+. . ..... . ......
T Consensus 631 SATLP~~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~ 710 (1110)
T TIGR02562 631 SATLPPALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRL 710 (1110)
T ss_pred eCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccce
Confidence 999998876532 2221 1 122221 0 00000 0 000001
Q ss_pred EEEEEcCcch-----hHHHHHHHH--------Hhc---cC-CCCc---EEEEcCChHHHHHHHHHHHhcC------CceE
Q psy7557 817 QKIIILDEDE-----KKDWLMEFF--------DNM---DE-ERDK---VMVFMGRKASVSAMSSDLACQY------RKSC 870 (936)
Q Consensus 817 ~~~~~~~~~~-----k~~~l~~~l--------~~~---~~-~~~~---~iIF~~s~~~~~~l~~~L~~~~------~~~~ 870 (936)
-.+..++... ....+...+ ..+ .+ .+++ .+|-+++++.+-.++..|.... +..+
T Consensus 711 a~i~~~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~ 790 (1110)
T TIGR02562 711 AELLSLSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLC 790 (1110)
T ss_pred EEEeecCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEE
Confidence 1112222211 111122211 111 11 1222 2666788888877777776543 3468
Q ss_pred EEeCCCCHHHHHHHHHHh----------------------hc----CCCcEEEecccCccCCCCCCCCEEEEccCCCChh
Q psy7557 871 SLYGDLSQEDREIALEDI----------------------TS----GYARICVATDVASRGLDVPDLTHVINYDFPSHIE 924 (936)
Q Consensus 871 ~~h~~l~~~~R~~~~~~F----------------------~~----g~~~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~ 924 (936)
+||+.....+|..+++.. ++ +...|+|||.+.+.|+|+ +.+++|-- |.++.
T Consensus 791 ~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~~--~~~~~ 867 (1110)
T TIGR02562 791 CYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIAD--PSSMR 867 (1110)
T ss_pred EecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeeec--cCcHH
Confidence 899999888887776553 12 456899999999999999 67777644 55699
Q ss_pred hhHhhhhhccC
Q psy7557 925 EYVHRVGRTGE 935 (936)
Q Consensus 925 ~yiqr~GRaGR 935 (936)
+.|||+||..|
T Consensus 868 sliQ~aGR~~R 878 (1110)
T TIGR02562 868 SIIQLAGRVNR 878 (1110)
T ss_pred HHHHHhhcccc
Confidence 99999999987
No 280
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.39 E-value=9.2e-12 Score=145.98 Aligned_cols=311 Identities=16% Similarity=0.183 Sum_probs=176.3
Q ss_pred CCcHHHHHHHHHHhc----C--CcEEE--EecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHH
Q psy7557 98 TPSPIQAQAWPILMS----G--HDMIG--IAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIERE 169 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~~----g--~d~l~--~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~ 169 (936)
.-+.+|-+|+..+.+ . .-.++ .|.||+|||++=.-- +..+. .+..|.+..|-.-.|.|..|.-+.
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARI-myaLs------d~~~g~RfsiALGLRTLTLQTGda 480 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARA-MYALR------DDKQGARFAIALGLRSLTLQTGHA 480 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHH-HHHhC------CCCCCceEEEEccccceeccchHH
Confidence 346799999988763 1 23333 499999999975432 22221 124566777777788888777666
Q ss_pred HHh-ccCCCCEEEEEeCCccchHHH-------------------------------------------HHhh--------
Q psy7557 170 VNK-IDYKGLKAVCVYGGKEIEPQL-------------------------------------------EKIR-------- 197 (936)
Q Consensus 170 ~~~-~~~~~~~~~~~~gg~~~~~~~-------------------------------------------~~~~-------- 197 (936)
+++ ++-..-..+++.||....+.. ..+.
T Consensus 481 ~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rl 560 (1110)
T TIGR02562 481 LKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTL 560 (1110)
T ss_pred HHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhh
Confidence 665 322223344444442211110 0000
Q ss_pred cCCcEEEeCCchhHHHHH--cC-CcCCC--C--ceEEEEccchhhhcCCCHHHHHHHHhhc-CCCCcEEEEEeccchHHH
Q psy7557 198 EGCHILIATPGRLNDFVS--RA-SIDLK--A--VSFVVLDEADRMLDLGFEPQINKTSIYI-NPNRQTVMTSATWNKDVQ 269 (936)
Q Consensus 198 ~~~~Iiv~Tp~~l~~~l~--~~-~~~~~--~--~~~lViDEah~l~~~~~~~~~~~i~~~~-~~~~q~~~~SAT~~~~~~ 269 (936)
-...++|||+..++-... ++ ...+. . -+.|||||+|-+-.. ....+.+++... .-...++++|||+|+...
T Consensus 561 l~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~-~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~ 639 (1110)
T TIGR02562 561 LAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE-DLPALLRLVQLAGLLGSRVLLSSATLPPALV 639 (1110)
T ss_pred hcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH-HHHHHHHHHHHHHHcCCCEEEEeCCCCHHHH
Confidence 025799999988876652 21 11111 1 257999999964322 222333333322 246789999999998765
Q ss_pred HHH-HHh----------cC---CCEEEEe---CCCCc---------------------------ccCCceEEEEEEeCch
Q psy7557 270 RVA-KKY----------MV---NPVKVNV---GSLDL---------------------------AATHTVTQKIIILDED 305 (936)
Q Consensus 270 ~~~-~~~----------~~---~~~~i~~---~~~~~---------------------------~~~~~~~~~~~~~~~~ 305 (936)
..+ ..| .. .++.|.. +.... ..+....-.+..++..
T Consensus 640 ~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~ 719 (1110)
T TIGR02562 640 KTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSL 719 (1110)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCc
Confidence 432 222 12 1222211 11000 0001111122222222
Q ss_pred -----hhHHHHHHHHHh--------cc---C-CCCcE---EEEeCchHHHHHHHHHhhhcC------CceeeecCCCCHH
Q psy7557 306 -----EKKDWLMEFFDN--------MD---E-ERDKV---MVFMGRKASVSAMSSDLACQY------RKSCSLYGDLSQE 359 (936)
Q Consensus 306 -----~k~~~l~~~l~~--------~~---~-~~~~~---iVF~~~~~~~~~l~~~L~~~~------~~~~~~h~~~~~~ 359 (936)
.....+.+.+.. +. . .+++| +|-+++++.+..++..|.... +..++||+..+..
T Consensus 720 ~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~ 799 (1110)
T TIGR02562 720 PRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLL 799 (1110)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHH
Confidence 122222222211 11 1 22333 677788888888888876542 3478899999888
Q ss_pred HHHHHHHHh----------------------hc----CCcEEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCc
Q psy7557 360 DREIALEDI----------------------TS----GYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRT 413 (936)
Q Consensus 360 ~R~~~~~~f----------------------~~----g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRa 413 (936)
.|..+++.. ++ +...|+|||.+.+.|+|+ +.+++|.- |.++.+.+||+||+
T Consensus 800 ~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~~--~~~~~sliQ~aGR~ 876 (1110)
T TIGR02562 800 LRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIAD--PSSMRSIIQLAGRV 876 (1110)
T ss_pred HHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeeec--cCcHHHHHHHhhcc
Confidence 887766543 12 467899999999999998 66666543 55699999999999
Q ss_pred ccCCCc
Q psy7557 414 GRAGKS 419 (936)
Q Consensus 414 gR~g~~ 419 (936)
.|.|..
T Consensus 877 ~R~~~~ 882 (1110)
T TIGR02562 877 NRHRLE 882 (1110)
T ss_pred cccccC
Confidence 998753
No 281
>KOG0925|consensus
Probab=99.39 E-value=3.4e-11 Score=127.01 Aligned_cols=305 Identities=20% Similarity=0.243 Sum_probs=172.4
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHHHH-HhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHH
Q psy7557 603 HYPEILRQLENLSFTTPSPIQAQAW-PILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRE 681 (936)
Q Consensus 603 l~~~~~~~l~~~g~~~p~~iQ~~ai-~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~ 681 (936)
.++...+.|++..- -|---|.+-+ ..+.+++-+++++.||||||. .+|-+...... .....+...-|.|-
T Consensus 32 ~s~rY~~ilk~R~~-LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKtt--QiPq~~~~~~~------~~~~~v~CTQprrv 102 (699)
T KOG0925|consen 32 YSQRYYDILKKRRE-LPVWEQKEEFLKLLLNNQIIVLVGETGSGKTT--QIPQFVLEYEL------SHLTGVACTQPRRV 102 (699)
T ss_pred CcHHHHHHHHHHhc-CchHHhHHHHHHHHhcCceEEEEecCCCCccc--cCcHHHHHHHH------hhccceeecCchHH
Confidence 34444555554322 3434455555 445567788999999999997 55543222111 11245778889999
Q ss_pred HHHHHHHHHHhccCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchh-ccCC-
Q psy7557 682 LATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRM-LDLG- 759 (936)
Q Consensus 682 La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l-~~~~- 759 (936)
-|.++..++..- .++..+.-.|.....+.... .+.-.-.+|-+.|++-.-+.. .+.+.+.+|+||||.- +...
T Consensus 103 aamsva~RVadE--MDv~lG~EVGysIrfEdC~~--~~T~Lky~tDgmLlrEams~p-~l~~y~viiLDeahERtlATDi 177 (699)
T KOG0925|consen 103 AAMSVAQRVADE--MDVTLGEEVGYSIRFEDCTS--PNTLLKYCTDGMLLREAMSDP-LLGRYGVIILDEAHERTLATDI 177 (699)
T ss_pred HHHHHHHHHHHH--hccccchhccccccccccCC--hhHHHHHhcchHHHHHHhhCc-ccccccEEEechhhhhhHHHHH
Confidence 998988877652 22333322332211111000 000111456555554333333 3788999999999942 1111
Q ss_pred CHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchh--HHHHHH-HHH
Q psy7557 760 FEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEK--KDWLME-FFD 836 (936)
Q Consensus 760 ~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k--~~~l~~-~l~ 836 (936)
.-..+..+... +++..+|.+|||+. ..++.. |..++-.+.+.. .+.+.- ++.++.++ .+..+. +++
T Consensus 178 LmGllk~v~~~-rpdLk~vvmSatl~--a~Kfq~-yf~n~Pll~vpg-----~~PvEi--~Yt~e~erDylEaairtV~q 246 (699)
T KOG0925|consen 178 LMGLLKEVVRN-RPDLKLVVMSATLD--AEKFQR-YFGNAPLLAVPG-----THPVEI--FYTPEPERDYLEAAIRTVLQ 246 (699)
T ss_pred HHHHHHHHHhh-CCCceEEEeecccc--hHHHHH-HhCCCCeeecCC-----CCceEE--EecCCCChhHHHHHHHHHHH
Confidence 11222333332 47999999999983 344444 444444444433 122222 23333322 222222 222
Q ss_pred h-ccCCCCcEEEEcCChHHHHHHHHHHHhc----C-----CceEEEeCCCCHHHHHHHHHHhh---cC--CCcEEEeccc
Q psy7557 837 N-MDEERDKVMVFMGRKASVSAMSSDLACQ----Y-----RKSCSLYGDLSQEDREIALEDIT---SG--YARICVATDV 901 (936)
Q Consensus 837 ~-~~~~~~~~iIF~~s~~~~~~l~~~L~~~----~-----~~~~~~h~~l~~~~R~~~~~~F~---~g--~~~vLVaT~~ 901 (936)
- ..+..+-++||.....+.+..++.+... + ..+..+| +.++..+++-.. +| ..+|+|+|++
T Consensus 247 ih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstni 322 (699)
T KOG0925|consen 247 IHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNI 322 (699)
T ss_pred HHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecc
Confidence 1 1245678999999998888777776532 2 2455566 333333332221 12 2479999999
Q ss_pred CccCCCCCCCCEEEEccC------------------CCChhhhHhhhhhccCC
Q psy7557 902 ASRGLDVPDLTHVINYDF------------------PSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 902 ~~~Gidip~v~~VI~~d~------------------p~s~~~yiqr~GRaGR~ 936 (936)
++..+-+++|.+||.-++ |-|..+--||.|||||.
T Consensus 323 aetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt 375 (699)
T KOG0925|consen 323 AETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT 375 (699)
T ss_pred hheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC
Confidence 999999999999997544 56778889999999994
No 282
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.36 E-value=2.7e-11 Score=141.41 Aligned_cols=282 Identities=11% Similarity=0.123 Sum_probs=164.7
Q ss_pred EecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhccCCCCEEEEEeCCccch---HHHHH
Q psy7557 119 IAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIE---PQLEK 195 (936)
Q Consensus 119 ~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~---~~~~~ 195 (936)
.+.+|||||.+|+-.+-..+ ..|..+|||+|...|+.|+.+.|+.... +..++.++++.... ..|..
T Consensus 166 ~~~~GSGKTevyl~~i~~~l---------~~Gk~vLvLvPEi~lt~q~~~rl~~~f~-~~~v~~lhS~l~~~~R~~~w~~ 235 (665)
T PRK14873 166 QALPGEDWARRLAAAAAATL---------RAGRGALVVVPDQRDVDRLEAALRALLG-AGDVAVLSAGLGPADRYRRWLA 235 (665)
T ss_pred hcCCCCcHHHHHHHHHHHHH---------HcCCeEEEEecchhhHHHHHHHHHHHcC-CCcEEEECCCCCHHHHHHHHHH
Confidence 33469999999986443333 3477899999999999999999998422 24577777765543 44566
Q ss_pred hhcC-CcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhh---cCCCHHHHHHHH--hhcCCCCcEEEEEeccchHHH
Q psy7557 196 IREG-CHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRML---DLGFEPQINKTS--IYINPNRQTVMTSATWNKDVQ 269 (936)
Q Consensus 196 ~~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~---~~~~~~~~~~i~--~~~~~~~q~~~~SAT~~~~~~ 269 (936)
+..| .+|+|||-..+ ...++++.+||+||-|--. +.+.+.+.+.+. .....+..+++.|||.+-+..
T Consensus 236 ~~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~ 308 (665)
T PRK14873 236 VLRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQ 308 (665)
T ss_pred HhCCCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHH
Confidence 6666 79999996544 3468999999999999532 122222233322 222357899999999876655
Q ss_pred HHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchh-------------hHHHHHHHHHhccCCCCcEEEEeCchHHHH
Q psy7557 270 RVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDE-------------KKDWLMEFFDNMDEERDKVMVFMGRKASVS 336 (936)
Q Consensus 270 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-------------k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~ 336 (936)
..+....... +....... .. ....+..++..+ --..+.+.+++....+ ++|||+|++.-+.
T Consensus 309 ~~~~~g~~~~--~~~~~~~~--~~-~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~g-qvll~lnRrGyap 382 (665)
T PRK14873 309 ALVESGWAHD--LVAPRPVV--RA-RAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHG-PVLVQVPRRGYVP 382 (665)
T ss_pred HHHhcCccee--eccccccc--cC-CCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcC-cEEEEecCCCCCC
Confidence 4444321111 10000000 00 001111111100 0123445555544556 9999999987543
Q ss_pred HHHHH-----hhhcCC-----------ceeeec-------------CC-------------------------CCHHHHH
Q psy7557 337 AMSSD-----LACQYR-----------KSCSLY-------------GD-------------------------LSQEDRE 362 (936)
Q Consensus 337 ~l~~~-----L~~~~~-----------~~~~~h-------------~~-------------------------~~~~~R~ 362 (936)
.+.-. ..|... ...++| |+ .-..++.
T Consensus 383 ~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~d~d 462 (665)
T PRK14873 383 SLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTSGGD 462 (665)
T ss_pred eeEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEEChH
Confidence 32211 111100 000000 00 0001334
Q ss_pred HHHHHhhcCCcEEEEEec----ccccCCCCCCCcEEEEecCC------C------CccccccCCCCcccCCCceeEEEEe
Q psy7557 363 IALEDITSGYARICVATD----VASRGLDVPDLTHVINYDFP------S------HIEEYVHRVGRTGRAGKSGESITLM 426 (936)
Q Consensus 363 ~~~~~f~~g~~~vLvaT~----~~~~GiDip~v~~VI~~d~p------~------s~~~y~qr~GRagR~g~~g~~~~~~ 426 (936)
.+++.|. ++.+|||+|. +++ +++++|+..|.- . ....+.|-.||+||.+..|..++..
T Consensus 463 ~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~ 536 (665)
T PRK14873 463 QVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVA 536 (665)
T ss_pred HHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEe
Confidence 5778886 5899999998 565 367777765542 1 2334578899999999999999875
Q ss_pred ccc
Q psy7557 427 TRK 429 (936)
Q Consensus 427 ~~~ 429 (936)
.++
T Consensus 537 ~p~ 539 (665)
T PRK14873 537 ESS 539 (665)
T ss_pred CCC
Confidence 333
No 283
>KOG0387|consensus
Probab=99.36 E-value=5.9e-11 Score=132.68 Aligned_cols=128 Identities=17% Similarity=0.201 Sum_probs=110.6
Q ss_pred hhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhh-hcCCceeeecCCCCHHHHHHHHHHhhcCCc-E-EEEEecc
Q psy7557 305 DEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLA-CQYRKSCSLYGDLSQEDREIALEDITSGYA-R-ICVATDV 381 (936)
Q Consensus 305 ~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~-~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~-~-vLvaT~~ 381 (936)
..|...+..++......+.+++.|..++...+.+-..|. ..++..+.+.|..+...|...+++|.++.. . .|++|-+
T Consensus 529 sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrv 608 (923)
T KOG0387|consen 529 SGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRV 608 (923)
T ss_pred cchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecc
Confidence 457777888888777788999999999999999999998 689999999999999999999999997654 3 5678999
Q ss_pred cccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCcee--EEEEecccChh
Q psy7557 382 ASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGE--SITLMTRKDWS 432 (936)
Q Consensus 382 ~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~--~~~~~~~~~~~ 432 (936)
.+-|+|+-.++-||.||+-+++.+=.|-.-||=|.|+.-. .|-|++....+
T Consensus 609 GGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIE 661 (923)
T KOG0387|consen 609 GGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIE 661 (923)
T ss_pred cccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHH
Confidence 9999999999999999999999999999999999998743 44456665433
No 284
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.35 E-value=6.8e-11 Score=136.77 Aligned_cols=277 Identities=19% Similarity=0.216 Sum_probs=175.6
Q ss_pred CCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc
Q psy7557 614 LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693 (936)
Q Consensus 614 ~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 693 (936)
+|. .|+++|...--.+.. .-|+.+.||-|||+++.+|++...+ .|..|-|++++.-||..=.+.+..+
T Consensus 82 lG~-r~ydVQliGgl~Lh~--G~IAEM~TGEGKTL~atlpaylnAL---------~GkgVhVVTvNdYLA~RDae~m~~v 149 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVLHE--GQIAEMKTGEGKTLVATLPSYLNAL---------TGKGVHVVTVNDYLARRDAEWMGQV 149 (939)
T ss_pred hCC-CcchhHHHhhhhhcC--CceeeecCCCChhHHHHHHHHHHhh---------cCCCeEEEeCCHHHHHhHHHHHHHH
Confidence 566 788888776655544 4689999999999999999986553 4677999999999999877777764
Q ss_pred -cCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHH-----HHHHHc--CCCCCCCceEEEEcccchhc-cCC-----
Q psy7557 694 -DYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRL-----NDFVSR--ASIDLKAVSFVVLDEADRML-DLG----- 759 (936)
Q Consensus 694 -~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l-----~~~l~~--~~~~~~~i~~lViDEah~l~-~~~----- 759 (936)
...|+.+.++.++.+.... +..-.|||+++|+..+ .+.+.. .....+.+.+.||||+|.++ |..
T Consensus 150 y~~LGLtvg~i~~~~~~~er--r~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLI 227 (939)
T PRK12902 150 HRFLGLSVGLIQQDMSPEER--KKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLI 227 (939)
T ss_pred HHHhCCeEEEECCCCChHHH--HHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCccc
Confidence 5779999998876655433 3334689999999887 333322 12235778999999999765 211
Q ss_pred ----------CHHHHHHHhhhcCC--------------CceEEEEE----------------------------------
Q psy7557 760 ----------FEPQINKTSIYINP--------------NRQTVMTS---------------------------------- 781 (936)
Q Consensus 760 ----------~~~~~~~i~~~~~~--------------~~q~v~~S---------------------------------- 781 (936)
.......+...+.+ ..+.+.+|
T Consensus 228 ISg~~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~ 307 (939)
T PRK12902 228 ISGQVERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAK 307 (939)
T ss_pred ccCCCccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHH
Confidence 11111112111111 12222332
Q ss_pred --------------------------------------------------------------------------ecCChH
Q psy7557 782 --------------------------------------------------------------------------ATWNKD 787 (936)
Q Consensus 782 --------------------------------------------------------------------------AT~~~~ 787 (936)
.|....
T Consensus 308 ~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te 387 (939)
T PRK12902 308 ELFIKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTE 387 (939)
T ss_pred HHHhcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHH
Confidence 222111
Q ss_pred HHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCC
Q psy7557 788 VQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYR 867 (936)
Q Consensus 788 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~ 867 (936)
...+.+-|..+-+. +... .+....-....++.....|...+++-+......+.|+||-+.|....+.++..|...++
T Consensus 388 ~~Ef~~iY~l~Vv~--IPTn-kP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi 464 (939)
T PRK12902 388 EVEFEKTYKLEVTV--IPTN-RPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGI 464 (939)
T ss_pred HHHHHHHhCCcEEE--cCCC-CCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCC
Confidence 11111111111100 0000 00000011122455667888888887777777889999999999999999999999999
Q ss_pred ceEEEeCCCCHHHHHH-HHHHhhcCC-CcEEEecccCccCCCCC
Q psy7557 868 KSCSLYGDLSQEDREI-ALEDITSGY-ARICVATDVASRGLDVP 909 (936)
Q Consensus 868 ~~~~~h~~l~~~~R~~-~~~~F~~g~-~~vLVaT~~~~~Gidip 909 (936)
+...+++.-.+.+++. ++. ..|+ -.|-|||+.++||-||.
T Consensus 465 ~h~vLNAk~~~~~~EA~IIa--~AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 465 PHNLLNAKPENVEREAEIVA--QAGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred chheeeCCCcchHhHHHHHH--hcCCCCcEEEeccCCCCCcCEe
Confidence 9988988622223322 222 2343 47999999999999985
No 285
>KOG0387|consensus
Probab=99.34 E-value=8.8e-11 Score=131.33 Aligned_cols=304 Identities=17% Similarity=0.177 Sum_probs=193.4
Q ss_pred CCCcHHHHHHHHhhh----cCCcEEEEecCCCCcchh--hHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHH
Q psy7557 617 TTPSPIQAQAWPILM----SGHDMIGIAQTGTGKTFA--FLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREV 690 (936)
Q Consensus 617 ~~p~~iQ~~ai~~~l----~g~d~i~~apTGsGKTl~--~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~ 690 (936)
..+.|+|+.++..+. ++.--|+.-.-|-|||.- ..|+.+.+.- .--..+|||||. .+..|+.+++
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~--------k~~~paLIVCP~-Tii~qW~~E~ 274 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSG--------KLTKPALIVCPA-TIIHQWMKEF 274 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcc--------cccCceEEEccH-HHHHHHHHHH
Confidence 356899999988766 456788888999999963 2223332221 112568999996 5668899999
Q ss_pred HhccCCCCEEEEEECCccch--------HHHHHH-----hcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhcc
Q psy7557 691 NKIDYKGLKAVCVYGGKELE--------PQLEKI-----REGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLD 757 (936)
Q Consensus 691 ~~~~~~~~~~~~~~gg~~~~--------~~~~~l-----~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~ 757 (936)
+.+ .+..++..++|..+.. .....+ ..+.+|+|+|.+.+.-. ...+.--.++++|+||.|++-.
T Consensus 275 ~~w-~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrN 351 (923)
T KOG0387|consen 275 QTW-WPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRN 351 (923)
T ss_pred HHh-CcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccccC
Confidence 987 4567888888755421 111111 12357999997665321 1223334578999999998754
Q ss_pred CCCHHHHHHHhhhcCCCceEEEEEecCChH-HHHHH---HHhc--------------CCCe-------------------
Q psy7557 758 LGFEPQINKTSIYINPNRQTVMTSATWNKD-VQRVA---KKYM--------------VNPV------------------- 800 (936)
Q Consensus 758 ~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~-~~~~~---~~~~--------------~~~~------------------- 800 (936)
.. ..+..-...++ ..+-+++|.|+-.+ +..+- .... ..|+
T Consensus 352 pn--s~islackki~-T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykc 428 (923)
T KOG0387|consen 352 PN--SKISLACKKIR-TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKC 428 (923)
T ss_pred Cc--cHHHHHHHhcc-ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHH
Confidence 32 11111112221 22335555553211 11100 0000 0000
Q ss_pred -------------------------------EEEe------------------------CCCC---------cccCC---
Q psy7557 801 -------------------------------KVNV------------------------GSLD---------LAATH--- 813 (936)
Q Consensus 801 -------------------------------~i~~------------------------~~~~---------~~~~~--- 813 (936)
.+.. +... ....+
T Consensus 429 a~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdl 508 (923)
T KOG0387|consen 429 AVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDL 508 (923)
T ss_pred HHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCccc
Confidence 0000 0000 00000
Q ss_pred ------ceEEEE---EEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHH-hcCCceEEEeCCCCHHHHHH
Q psy7557 814 ------TVTQKI---IILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLA-CQYRKSCSLYGDLSQEDREI 883 (936)
Q Consensus 814 ------~~~~~~---~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~-~~~~~~~~~h~~l~~~~R~~ 883 (936)
...+.. -......|+..+..++......+.++|.|..++...+-+...|. ..++...-+.|..+...|..
T Consensus 509 l~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~ 588 (923)
T KOG0387|consen 509 LDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQK 588 (923)
T ss_pred ccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhH
Confidence 000000 11223457888899988888888899999999999999999998 57889999999999999999
Q ss_pred HHHHhhcCCC--cEEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccC
Q psy7557 884 ALEDITSGYA--RICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGE 935 (936)
Q Consensus 884 ~~~~F~~g~~--~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR 935 (936)
..++|.++.. -.|++|.+.+-|+|+-..+-||.||+-.++.+=.|-.-||=|
T Consensus 589 lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawR 642 (923)
T KOG0387|consen 589 LVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWR 642 (923)
T ss_pred HHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHh
Confidence 9999998764 367899999999999999999999998888887777666654
No 286
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.34 E-value=3.3e-10 Score=135.07 Aligned_cols=88 Identities=24% Similarity=0.367 Sum_probs=63.8
Q ss_pred HHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhc----CCCcEEEecccCccC
Q psy7557 830 WLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITS----GYARICVATDVASRG 905 (936)
Q Consensus 830 ~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~----g~~~vLVaT~~~~~G 905 (936)
.+.+.+.......+.++||++|....+.++..|..........+|. ..|..+++.|++ |+..||++|+.+.+|
T Consensus 522 ~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EG 598 (697)
T PRK11747 522 EMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEG 598 (697)
T ss_pred HHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCC---chHHHHHHHHHHHhccCCCeEEEEecccccc
Confidence 3444343332345568999999999999999887533233444554 256778877764 677899999999999
Q ss_pred CCCCC--CCEEEEccCC
Q psy7557 906 LDVPD--LTHVINYDFP 920 (936)
Q Consensus 906 idip~--v~~VI~~d~p 920 (936)
||+|+ +++||...+|
T Consensus 599 VD~pGd~l~~vII~kLP 615 (697)
T PRK11747 599 LDLPGDYLTQVIITKIP 615 (697)
T ss_pred ccCCCCceEEEEEEcCC
Confidence 99997 6789987777
No 287
>KOG0384|consensus
Probab=99.31 E-value=9.5e-12 Score=144.90 Aligned_cols=318 Identities=16% Similarity=0.202 Sum_probs=201.7
Q ss_pred CCCcHHHHHHHHHHh----cCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHh
Q psy7557 97 TTPSPIQAQAWPILM----SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK 172 (936)
Q Consensus 97 ~~~~~~Q~~ai~~~~----~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 172 (936)
.+++.+|...+.-++ .+.++|+.-.-|-|||.--+ ..|..+.... ...|| .||++|.-.+. -+.+.|..
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti-~fl~~l~~~~----~~~gp-flvvvplst~~-~W~~ef~~ 441 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTI-TFLSYLFHSL----QIHGP-FLVVVPLSTIT-AWEREFET 441 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHH-HHHHHHHHhh----hccCC-eEEEeehhhhH-HHHHHHHH
Confidence 689999999987654 67899999999999998421 1222221110 12344 58888876553 46777877
Q ss_pred ccCCCCEEEEEeCCccchHHHHHh---h-c-----CCcEEEeCCchhHHHHHcCCcCCC--CceEEEEccchhhhcCCCH
Q psy7557 173 IDYKGLKAVCVYGGKEIEPQLEKI---R-E-----GCHILIATPGRLNDFVSRASIDLK--AVSFVVLDEADRMLDLGFE 241 (936)
Q Consensus 173 ~~~~~~~~~~~~gg~~~~~~~~~~---~-~-----~~~Iiv~Tp~~l~~~l~~~~~~~~--~~~~lViDEah~l~~~~~~ 241 (936)
+. .+.+++.+|.......+..- . . ..+++++|-+.++.- .-.|+ ...++++||||+|-...
T Consensus 442 w~--~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkD----k~~L~~i~w~~~~vDeahrLkN~~-- 513 (1373)
T KOG0384|consen 442 WT--DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKD----KAELSKIPWRYLLVDEAHRLKNDE-- 513 (1373)
T ss_pred Hh--hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhcc----HhhhccCCcceeeecHHhhcCchH--
Confidence 54 67788887776544443321 1 1 268999998766431 11233 34789999999985322
Q ss_pred HHHHHHHhhcCCCCcEEEEEeccch-HHHHHH---HHhcC----------------------------------------
Q psy7557 242 PQINKTSIYINPNRQTVMTSATWNK-DVQRVA---KKYMV---------------------------------------- 277 (936)
Q Consensus 242 ~~~~~i~~~~~~~~q~~~~SAT~~~-~~~~~~---~~~~~---------------------------------------- 277 (936)
..+...+..+..+ ..++.|.|+-. ++..+. ...+.
T Consensus 514 ~~l~~~l~~f~~~-~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdv 592 (1373)
T KOG0384|consen 514 SKLYESLNQFKMN-HRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDV 592 (1373)
T ss_pred HHHHHHHHHhccc-ceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhh
Confidence 1111112222211 23555565321 121111 00000
Q ss_pred ------CCEEE-EeCCCC----------------------cccCCc----------eEEEEEEeCc--------------
Q psy7557 278 ------NPVKV-NVGSLD----------------------LAATHT----------VTQKIIILDE-------------- 304 (936)
Q Consensus 278 ------~~~~i-~~~~~~----------------------~~~~~~----------~~~~~~~~~~-------------- 304 (936)
.+-.| .+.-.. ...+.- -.+-+++-..
T Consensus 593 ekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d 672 (1373)
T KOG0384|consen 593 EKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRD 672 (1373)
T ss_pred ccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchH
Confidence 00000 000000 000000 0000111111
Q ss_pred ---------hhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhc---CC
Q psy7557 305 ---------DEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITS---GY 372 (936)
Q Consensus 305 ---------~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~---g~ 372 (936)
..|...|-++|..+...+++||||..-....+-|+++|..++++.--+-|.+..+-|..+++.|.. ..
T Consensus 673 ~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~Sdd 752 (1373)
T KOG0384|consen 673 EALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDD 752 (1373)
T ss_pred HHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCc
Confidence 111122334455556778999999999999999999999999999999999999999999999974 45
Q ss_pred cEEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCce--eEEEEecccC
Q psy7557 373 ARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSG--ESITLMTRKD 430 (936)
Q Consensus 373 ~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g--~~~~~~~~~~ 430 (936)
.-.|.||-+.+-|||+-.+++||.||.-+++..=+|---||-|-|+.- ..|-|++.+.
T Consensus 753 FvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 753 FVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred eEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCc
Confidence 678999999999999999999999999999999999999999998774 5677788764
No 288
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.31 E-value=1.4e-10 Score=139.66 Aligned_cols=105 Identities=20% Similarity=0.218 Sum_probs=78.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHhhhcCCc-eeeecCCCCHHHHHHHHHHhhcCCc-EEEEEecccccCCCCCCC--cEEEE
Q psy7557 321 ERDKVMVFMGRKASVSAMSSDLACQYRK-SCSLYGDLSQEDREIALEDITSGYA-RICVATDVASRGLDVPDL--THVIN 396 (936)
Q Consensus 321 ~~~~~iVF~~~~~~~~~l~~~L~~~~~~-~~~~h~~~~~~~R~~~~~~f~~g~~-~vLvaT~~~~~GiDip~v--~~VI~ 396 (936)
.+++++||++|......+++.+...... ....+|..+ +...++.|+.+.- .++|+|..+++|||+|+- ++||.
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI 554 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVI 554 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEE
Confidence 4569999999999999999999876653 334455443 4478888887655 899999999999999975 67888
Q ss_pred ecCCC------------------------------CccccccCCCCcccCCCceeEEEEecc
Q psy7557 397 YDFPS------------------------------HIEEYVHRVGRTGRAGKSGESITLMTR 428 (936)
Q Consensus 397 ~d~p~------------------------------s~~~y~qr~GRagR~g~~g~~~~~~~~ 428 (936)
..+|- -+..+.|-+||.=|.-..--.+++++.
T Consensus 555 ~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~ 616 (654)
T COG1199 555 VGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDK 616 (654)
T ss_pred EecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecc
Confidence 88773 223457999999997555444445544
No 289
>KOG0390|consensus
Probab=99.28 E-value=2.1e-10 Score=131.98 Aligned_cols=100 Identities=12% Similarity=0.129 Sum_probs=80.4
Q ss_pred CchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCc--E-EEEEecccccCCCCCCCcEEEEecCCCCcccc
Q psy7557 330 GRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYA--R-ICVATDVASRGLDVPDLTHVINYDFPSHIEEY 406 (936)
Q Consensus 330 ~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~--~-vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y 406 (936)
|-+...+-+....+-+|+.++.+||.|+..+|..+++.|.+... . .|.+|-+.+.||++=+.+.||.||+.++++.=
T Consensus 603 ny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d 682 (776)
T KOG0390|consen 603 NYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVD 682 (776)
T ss_pred cHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhH
Confidence 33444444444445568999999999999999999999986332 3 55677899999999999999999999999999
Q ss_pred ccCCCCcccCCCceeE--EEEeccc
Q psy7557 407 VHRVGRTGRAGKSGES--ITLMTRK 429 (936)
Q Consensus 407 ~qr~GRagR~g~~g~~--~~~~~~~ 429 (936)
.|-++||=|.|+.-.| |-|++.+
T Consensus 683 ~QAmaR~~RdGQKk~v~iYrLlatG 707 (776)
T KOG0390|consen 683 QQAMARAWRDGQKKPVYIYRLLATG 707 (776)
T ss_pred HHHHHHhccCCCcceEEEEEeecCC
Confidence 9999999999988554 4456554
No 290
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.28 E-value=1.4e-10 Score=135.56 Aligned_cols=134 Identities=12% Similarity=0.129 Sum_probs=92.6
Q ss_pred CCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhccCCCCEEEEEECCccchHHHH---HHhc
Q psy7557 642 TGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLE---KIRE 718 (936)
Q Consensus 642 TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~ 718 (936)
+|||||.+|+-.+-..+ ..|..+||++|...|+.|+.+.++.... +..++.++++.+...... .+.+
T Consensus 169 ~GSGKTevyl~~i~~~l---------~~Gk~vLvLvPEi~lt~q~~~rl~~~f~-~~~v~~lhS~l~~~~R~~~w~~~~~ 238 (665)
T PRK14873 169 PGEDWARRLAAAAAATL---------RAGRGALVVVPDQRDVDRLEAALRALLG-AGDVAVLSAGLGPADRYRRWLAVLR 238 (665)
T ss_pred CCCcHHHHHHHHHHHHH---------HcCCeEEEEecchhhHHHHHHHHHHHcC-CCcEEEECCCCCHHHHHHHHHHHhC
Confidence 59999999986554433 3477899999999999999999987532 256788888876654433 3444
Q ss_pred C-ceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhcc---CCCHHHHHHH--hhhcCCCceEEEEEecCChHHHHHH
Q psy7557 719 G-CHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLD---LGFEPQINKT--SIYINPNRQTVMTSATWNKDVQRVA 792 (936)
Q Consensus 719 ~-~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~---~~~~~~~~~i--~~~~~~~~q~v~~SAT~~~~~~~~~ 792 (936)
| +.|+|||-..+ ...++++++||+||-|--.- .+.+...+.+ ......+..+|+.|||.+-+....+
T Consensus 239 G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~ 311 (665)
T PRK14873 239 GQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALV 311 (665)
T ss_pred CCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence 5 78999996544 44689999999999995331 1222122222 2222367889999999875554433
No 291
>KOG1000|consensus
Probab=99.28 E-value=3.2e-09 Score=112.69 Aligned_cols=333 Identities=14% Similarity=0.184 Sum_probs=209.2
Q ss_pred CCCCcHHHHHHHHHHh-cCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhcc
Q psy7557 96 FTTPSPIQAQAWPILM-SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID 174 (936)
Q Consensus 96 ~~~~~~~Q~~ai~~~~-~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 174 (936)
+..+-|+|.+.+..++ +|..+++.-.-|-|||+-++--+. ... ... -.||+||. .|-..+.+.+++|.
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~-yyr--------aEw-plliVcPA-svrftWa~al~r~l 264 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIAR-YYR--------AEW-PLLIVCPA-SVRFTWAKALNRFL 264 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHH-HHh--------hcC-cEEEEecH-HHhHHHHHHHHHhc
Confidence 3456899999998876 677788888999999997654222 221 223 36899997 45566888888875
Q ss_pred CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHHHhhcCCC
Q psy7557 175 YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPN 254 (936)
Q Consensus 175 ~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~ 254 (936)
+.-..+..+.++.+.-.. +-....|.|.+-+.+..+- ..+.-...+++|+||.|.+-+.. ....+.+...+..-
T Consensus 265 ps~~pi~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~--~~l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~a 338 (689)
T KOG1000|consen 265 PSIHPIFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLH--DILKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVA 338 (689)
T ss_pred ccccceEEEecccCCccc---cccCCeEEEEEHHHHHHHH--HHHhcccceEEEEechhhhhccc-hhhhhhhhhHHHHh
Confidence 544456666666543321 1122467888877664321 12223457899999999765432 33344444444555
Q ss_pred CcEEEEEeccc-------------------hHHHHHHHHhcCC-CEEEEeCCCCc-------------------------
Q psy7557 255 RQTVMTSATWN-------------------KDVQRVAKKYMVN-PVKVNVGSLDL------------------------- 289 (936)
Q Consensus 255 ~q~~~~SAT~~-------------------~~~~~~~~~~~~~-~~~i~~~~~~~------------------------- 289 (936)
.+++++|.|+. ++..+++..|... .+.+..+....
T Consensus 339 khvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~ 418 (689)
T KOG1000|consen 339 KHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLK 418 (689)
T ss_pred hheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68899999852 1222333333211 11111111100
Q ss_pred ccCCceEEEEEEeCc---------------------h----------------hhHHHHHHHHHh----ccCCCCcEEEE
Q psy7557 290 AATHTVTQKIIILDE---------------------D----------------EKKDWLMEFFDN----MDEERDKVMVF 328 (936)
Q Consensus 290 ~~~~~~~~~~~~~~~---------------------~----------------~k~~~l~~~l~~----~~~~~~~~iVF 328 (936)
..+....+.++.+.. . .|...+.+.+.. ....+.+.+||
T Consensus 419 qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVF 498 (689)
T KOG1000|consen 419 QLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVF 498 (689)
T ss_pred hCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEE
Confidence 011111222222111 0 011111222222 12456799999
Q ss_pred eCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCC-cEE-EEEecccccCCCCCCCcEEEEecCCCCcccc
Q psy7557 329 MGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGY-ARI-CVATDVASRGLDVPDLTHVINYDFPSHIEEY 406 (936)
Q Consensus 329 ~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~-~~v-LvaT~~~~~GiDip~v~~VI~~d~p~s~~~y 406 (936)
|+-....+.+...+..++++..-+.|..+..+|....+.|...+ .+| +++-.+++.|+++.+.+.|+...+++++.-.
T Consensus 499 aHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvL 578 (689)
T KOG1000|consen 499 AHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVL 578 (689)
T ss_pred ehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceE
Confidence 99999999999999999999999999999999999999998643 443 3456789999999999999999999999999
Q ss_pred ccCCCCcccCCCceeE-E-EEeccc-----ChhhHHhHHHHHhhcC
Q psy7557 407 VHRVGRTGRAGKSGES-I-TLMTRK-----DWSHAHEIIPILEEGG 445 (936)
Q Consensus 407 ~qr~GRagR~g~~g~~-~-~~~~~~-----~~~~~~~l~~~l~~~~ 445 (936)
+|-=-|+-|-|+..-. + .|+.++ .|..+.+=++.|.+.+
T Consensus 579 lQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~g 624 (689)
T KOG1000|consen 579 LQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSVG 624 (689)
T ss_pred EechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHHhhcc
Confidence 9999999998877432 2 233332 2444444455555554
No 292
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.23 E-value=2.5e-09 Score=117.09 Aligned_cols=289 Identities=17% Similarity=0.192 Sum_probs=196.0
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHhccCCCCEEE------EEeC--------------CccchHHHHHhhc----------
Q psy7557 149 AGPSVLVMAPTRELATQIEREVNKIDYKGLKAV------CVYG--------------GKEIEPQLEKIRE---------- 198 (936)
Q Consensus 149 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~------~~~g--------------g~~~~~~~~~~~~---------- 198 (936)
..|+||||+|+|.-|.++.+.+-++...+..+. .-+| .......+..+..
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 468999999999999998887777533211000 0111 0011112221111
Q ss_pred ---------------CCcEEEeCCchhHHHHHc------CCcCCCCceEEEEccchhhhcCCCHHHHHHHHhhc---CC-
Q psy7557 199 ---------------GCHILIATPGRLNDFVSR------ASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYI---NP- 253 (936)
Q Consensus 199 ---------------~~~Iiv~Tp~~l~~~l~~------~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~---~~- 253 (936)
++|||||+|=-|...+.. ..-.|+.+.++|+|.||.|+-.. ...+..++..+ |.
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQN-W~Hv~~v~~~lN~~P~~ 194 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQN-WEHVLHVFEHLNLQPKK 194 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhh-HHHHHHHHHHhccCCCC
Confidence 479999999988777763 23348999999999999776433 22333333332 21
Q ss_pred --------------------CCcEEEEEeccchHHHHHHHHhcCCC---EEEEeCCCC----cccCCceEEEEEEeCc--
Q psy7557 254 --------------------NRQTVMTSATWNKDVQRVAKKYMVNP---VKVNVGSLD----LAATHTVTQKIIILDE-- 304 (936)
Q Consensus 254 --------------------~~q~~~~SAT~~~~~~~~~~~~~~~~---~~i~~~~~~----~~~~~~~~~~~~~~~~-- 304 (936)
-+|++++|+...+++..+....+.|. +.+...... ......+.|.+...+.
T Consensus 195 ~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s 274 (442)
T PF06862_consen 195 SHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSS 274 (442)
T ss_pred CCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCC
Confidence 26999999999999999988876654 222211110 1233456677665432
Q ss_pred -----hhhHHHHHH-HHHhc--cCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEE
Q psy7557 305 -----DEKKDWLME-FFDNM--DEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARIC 376 (936)
Q Consensus 305 -----~~k~~~l~~-~l~~~--~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vL 376 (936)
+.+++...+ ++-.+ ....+.+|||+++--+-..+-++|...++..+.+|--.++.+-.++-..|..|+.++|
T Consensus 275 ~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iL 354 (442)
T PF06862_consen 275 PADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPIL 354 (442)
T ss_pred cchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEE
Confidence 223333222 22222 2467899999999999999999999999999999999999999999999999999999
Q ss_pred EEecc--cccCCCCCCCcEEEEecCCCCccccccCCCCcccCC------CceeEEEEecccChhhHHhHH
Q psy7557 377 VATDV--ASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAG------KSGESITLMTRKDWSHAHEII 438 (936)
Q Consensus 377 vaT~~--~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g------~~g~~~~~~~~~~~~~~~~l~ 438 (936)
+-|.= .=+=..+.++..||.|.+|..+.=|-..++-.+... ..+.+.++++.-|.-.+..++
T Consensus 355 L~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIV 424 (442)
T PF06862_consen 355 LYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIV 424 (442)
T ss_pred EEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHh
Confidence 99963 445578889999999999998877655554333332 357899999998877666555
No 293
>KOG0384|consensus
Probab=99.22 E-value=5.7e-11 Score=138.56 Aligned_cols=305 Identities=15% Similarity=0.191 Sum_probs=191.1
Q ss_pred CCCcHHHHHHHHhhh----cCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHh
Q psy7557 617 TTPSPIQAQAWPILM----SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK 692 (936)
Q Consensus 617 ~~p~~iQ~~ai~~~l----~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 692 (936)
..++.+|...+..++ .+.|+|+.-.-|-|||+--+ ..|..+... ..-.|| .||++|...+.. +.+.+..
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti-~fl~~l~~~----~~~~gp-flvvvplst~~~-W~~ef~~ 441 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTI-TFLSYLFHS----LQIHGP-FLVVVPLSTITA-WEREFET 441 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHH-HHHHHHHHh----hhccCC-eEEEeehhhhHH-HHHHHHH
Confidence 689999999887665 67899999999999997322 222222111 012355 488889876643 7777777
Q ss_pred ccCCCCEEEEEECCccchHHHHHHh----c-----CceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHH
Q psy7557 693 IDYKGLKAVCVYGGKELEPQLEKIR----E-----GCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQ 763 (936)
Q Consensus 693 ~~~~~~~~~~~~gg~~~~~~~~~l~----~-----~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~ 763 (936)
+. .+++++.+|.......++... . ..+++++|-+.++.--. .+.--...++++||||++-... ..
T Consensus 442 w~--~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~--~L~~i~w~~~~vDeahrLkN~~--~~ 515 (1373)
T KOG0384|consen 442 WT--DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA--ELSKIPWRYLLVDEAHRLKNDE--SK 515 (1373)
T ss_pred Hh--hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh--hhccCCcceeeecHHhhcCchH--HH
Confidence 65 788888888765554443321 1 26899999887643211 1112245789999999975432 12
Q ss_pred HHHHhhhcCCCceEEEEEecC-ChHHHHHHHHh-cCCC------------------------------------------
Q psy7557 764 INKTSIYINPNRQTVMTSATW-NKDVQRVAKKY-MVNP------------------------------------------ 799 (936)
Q Consensus 764 ~~~i~~~~~~~~q~v~~SAT~-~~~~~~~~~~~-~~~~------------------------------------------ 799 (936)
+-..+..+..+.+ +++|.|+ -.++..+...+ +..|
T Consensus 516 l~~~l~~f~~~~r-llitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvek 594 (1373)
T KOG0384|consen 516 LYESLNQFKMNHR-LLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEK 594 (1373)
T ss_pred HHHHHHHhcccce-eeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhcc
Confidence 2222333333333 5555663 22333322111 0001
Q ss_pred ------eEE-EeCCCC----------------------cccCC----------ceEEEEEEcCc----------------
Q psy7557 800 ------VKV-NVGSLD----------------------LAATH----------TVTQKIIILDE---------------- 824 (936)
Q Consensus 800 ------~~i-~~~~~~----------------------~~~~~----------~~~~~~~~~~~---------------- 824 (936)
..| .+.-.. ..... .-.+.+.+-..
T Consensus 595 slp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~ 674 (1373)
T KOG0384|consen 595 SLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEA 674 (1373)
T ss_pred CCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHH
Confidence 000 000000 00000 00011111111
Q ss_pred -------chhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhc---CCCc
Q psy7557 825 -------DEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITS---GYAR 894 (936)
Q Consensus 825 -------~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~---g~~~ 894 (936)
..|+-+|-++|..+...+.+||||..-++..+-|+++|...+++.--+.|.+..+-|..+++.|.. ...-
T Consensus 675 L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFv 754 (1373)
T KOG0384|consen 675 LQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFV 754 (1373)
T ss_pred HHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceE
Confidence 111122344555566678999999999999999999999999999999999999999999999975 3456
Q ss_pred EEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccC
Q psy7557 895 ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGE 935 (936)
Q Consensus 895 vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR 935 (936)
.|.||-+.+-|||+-..+.||.||--.++..=+|-.-||-|
T Consensus 755 FLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHR 795 (1373)
T KOG0384|consen 755 FLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHR 795 (1373)
T ss_pred EEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHh
Confidence 99999999999999999999999998887777766666554
No 294
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.21 E-value=9.8e-10 Score=132.50 Aligned_cols=77 Identities=19% Similarity=0.211 Sum_probs=60.1
Q ss_pred CCCcEEEEcCChHHHHHHHHHHHhcCCc-eEEEeCCCCHHHHHHHHHHhhcCCC-cEEEecccCccCCCCCCC--CEEEE
Q psy7557 841 ERDKVMVFMGRKASVSAMSSDLACQYRK-SCSLYGDLSQEDREIALEDITSGYA-RICVATDVASRGLDVPDL--THVIN 916 (936)
Q Consensus 841 ~~~~~iIF~~s~~~~~~l~~~L~~~~~~-~~~~h~~l~~~~R~~~~~~F~~g~~-~vLVaT~~~~~Gidip~v--~~VI~ 916 (936)
..++++||++|....+.++..+...... ....+|.. .+...++.|+.+.- .++|+|..+++|||+|+= ..||.
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI 554 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVI 554 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEE
Confidence 3458999999999999999999876653 33444443 34478888887655 899999999999999975 56888
Q ss_pred ccCC
Q psy7557 917 YDFP 920 (936)
Q Consensus 917 ~d~p 920 (936)
..+|
T Consensus 555 ~~lP 558 (654)
T COG1199 555 VGLP 558 (654)
T ss_pred EecC
Confidence 7776
No 295
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.19 E-value=4.6e-09 Score=126.63 Aligned_cols=73 Identities=22% Similarity=0.221 Sum_probs=59.4
Q ss_pred CCCCCcHHHHHHHHHHh----cCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q psy7557 95 SFTTPSPIQAQAWPILM----SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREV 170 (936)
Q Consensus 95 g~~~~~~~Q~~ai~~~~----~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~ 170 (936)
-|..++|.|.+.+..+. .|.++++.||||+|||++.+.|++...... ...++++|.+.|..=..|+.+++
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~------~~~~kIiy~sRThsQl~q~i~El 80 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEK------PEVRKIIYASRTHSQLEQATEEL 80 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhc------cccccEEEEcccchHHHHHHHHH
Confidence 36667999999887654 678999999999999999999998765422 23468999999998888888888
Q ss_pred Hhc
Q psy7557 171 NKI 173 (936)
Q Consensus 171 ~~~ 173 (936)
+++
T Consensus 81 k~~ 83 (705)
T TIGR00604 81 RKL 83 (705)
T ss_pred Hhh
Confidence 884
No 296
>KOG0390|consensus
Probab=99.19 E-value=3.7e-09 Score=121.90 Aligned_cols=307 Identities=16% Similarity=0.162 Sum_probs=177.2
Q ss_pred CCCcHHHHHHHHhhhc---CC------c-EEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHH
Q psy7557 617 TTPSPIQAQAWPILMS---GH------D-MIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQI 686 (936)
Q Consensus 617 ~~p~~iQ~~ai~~~l~---g~------d-~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~ 686 (936)
..++|+|.+.+.-+.. |. + .|+.=..|+|||+-.+ +.+..++.+. |....--.++||++|. .|+.-+
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~I-sflwtlLrq~-P~~~~~~~k~lVV~P~-sLv~nW 313 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCI-SFIWTLLRQF-PQAKPLINKPLVVAPS-SLVNNW 313 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHH-HHHHHHHHhC-cCccccccccEEEccH-HHHHHH
Confidence 3679999999987763 22 2 3344478999998644 3333333321 1111112678999994 788899
Q ss_pred HHHHHhccCC-CCEEEEEECCccc--hHHHHHHhc-----CceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccC
Q psy7557 687 EREVNKIDYK-GLKAVCVYGGKEL--EPQLEKIRE-----GCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDL 758 (936)
Q Consensus 687 ~~~~~~~~~~-~~~~~~~~gg~~~--~~~~~~l~~-----~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~ 758 (936)
+++|.++... .+....++|+... ......+.- ..-|++.+-+.+.+... .+....+++||+||.|++=..
T Consensus 314 kkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~--~il~~~~glLVcDEGHrlkN~ 391 (776)
T KOG0390|consen 314 KKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCR--KILLIRPGLLVCDEGHRLKNS 391 (776)
T ss_pred HHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH--HHhcCCCCeEEECCCCCccch
Confidence 9999998664 6777777777653 111111111 13577778787765554 334677899999999986322
Q ss_pred CCHHHHHHHhhhcCCCceEEEEEecCChH-HHHH----------------------------------------------
Q psy7557 759 GFEPQINKTSIYINPNRQTVMTSATWNKD-VQRV---------------------------------------------- 791 (936)
Q Consensus 759 ~~~~~~~~i~~~~~~~~q~v~~SAT~~~~-~~~~---------------------------------------------- 791 (936)
...+...+..+. -.+-|++|.|+-++ +.++
T Consensus 392 --~s~~~kaL~~l~-t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~ 468 (776)
T KOG0390|consen 392 --DSLTLKALSSLK-TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQ 468 (776)
T ss_pred --hhHHHHHHHhcC-CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHH
Confidence 112222222232 22347778874221 1111
Q ss_pred -----HHHhcCCCeEEEeCCCCcccCCceEEEEEEcC-------------------------------------------
Q psy7557 792 -----AKKYMVNPVKVNVGSLDLAATHTVTQKIIILD------------------------------------------- 823 (936)
Q Consensus 792 -----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------------------------------------------- 823 (936)
...+... ..+..-.........++++++
T Consensus 469 eL~~~t~~fi~r----rt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~ 544 (776)
T KOG0390|consen 469 ELRELTNKFILR----RTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLL 544 (776)
T ss_pred HHHHHHHhheee----cccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhc
Confidence 1111000 000000000000001111111
Q ss_pred -------------------------------cchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHH-HHHHhcCCceEE
Q psy7557 824 -------------------------------EDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMS-SDLACQYRKSCS 871 (936)
Q Consensus 824 -------------------------------~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~-~~L~~~~~~~~~ 871 (936)
...++..|..++........--.|++..-.+...+. ....-.|..++.
T Consensus 545 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~r 624 (776)
T KOG0390|consen 545 LCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLR 624 (776)
T ss_pred ccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEE
Confidence 012233334443332222111233334444444444 334456889999
Q ss_pred EeCCCCHHHHHHHHHHhhcCCC--c-EEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccC
Q psy7557 872 LYGDLSQEDREIALEDITSGYA--R-ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGE 935 (936)
Q Consensus 872 ~h~~l~~~~R~~~~~~F~~g~~--~-vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR 935 (936)
+||.|+..+|..+.+.|.+-.. . .|.+|.+.+.||++-+.+.||.||+..++..=.|-++||=|
T Consensus 625 LdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~R 691 (776)
T KOG0390|consen 625 LDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWR 691 (776)
T ss_pred EcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhcc
Confidence 9999999999999999986443 3 56677889999999999999999999999999999999866
No 297
>KOG0389|consensus
Probab=99.17 E-value=1.4e-09 Score=121.78 Aligned_cols=127 Identities=17% Similarity=0.194 Sum_probs=109.0
Q ss_pred hhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCC--cEEEEEeccc
Q psy7557 305 DEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGY--ARICVATDVA 382 (936)
Q Consensus 305 ~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~--~~vLvaT~~~ 382 (936)
..|...|..+|......+.+|+||..--...+-|...|...++...-+.|...-.+|...++.|-..+ .-.|.+|-+.
T Consensus 760 SgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAG 839 (941)
T KOG0389|consen 760 SGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAG 839 (941)
T ss_pred hhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccC
Confidence 35667777777777778899999999888888899999999999999999999999999999997654 3467899999
Q ss_pred ccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCc--eeEEEEecccCh
Q psy7557 383 SRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKS--GESITLMTRKDW 431 (936)
Q Consensus 383 ~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~--g~~~~~~~~~~~ 431 (936)
+-|||+-.+++||.||+-.++-+=.|---||-|.|+. =..+-+++++..
T Consensus 840 G~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TI 890 (941)
T KOG0389|consen 840 GFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTI 890 (941)
T ss_pred cceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcH
Confidence 9999999999999999998888888888888888876 456677777754
No 298
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.12 E-value=3.1e-09 Score=122.08 Aligned_cols=287 Identities=18% Similarity=0.204 Sum_probs=179.3
Q ss_pred EEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhccCCCCEEEEEeCCccchHHHHH
Q psy7557 116 MIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEK 195 (936)
Q Consensus 116 ~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 195 (936)
.++.||.|||||.+.+ ..+..... ..+.++|+++..++|+.++.+.++.....++....-.++.....
T Consensus 52 ~vVRSpMGTGKTtaLi-~wLk~~l~-------~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~~i~~---- 119 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALI-RWLKDALK-------NPDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDYIIDG---- 119 (824)
T ss_pred EEEECCCCCCcHHHHH-HHHHHhcc-------CCCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeeccccccccc----
Confidence 4666999999998643 33433321 34678999999999999999999875433433222211111110
Q ss_pred hhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHH-------HHHHHhhcCCCCcEEEEEeccchHH
Q psy7557 196 IREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQ-------INKTSIYINPNRQTVMTSATWNKDV 268 (936)
Q Consensus 196 ~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~-------~~~i~~~~~~~~q~~~~SAT~~~~~ 268 (936)
...+-+++..++|..+- ...+.+.++|||||+-..+..=|.+. +..+...+.....+|++-|++....
T Consensus 120 --~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~t 194 (824)
T PF02399_consen 120 --RPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQT 194 (824)
T ss_pred --cccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHH
Confidence 12466777777775543 22466789999999997765422222 2234445667789999999999999
Q ss_pred HHHHHHhcCC-CEEEEeCCCCcccCCceEEEEEEeC------------------------------------chhhHHHH
Q psy7557 269 QRVAKKYMVN-PVKVNVGSLDLAATHTVTQKIIILD------------------------------------EDEKKDWL 311 (936)
Q Consensus 269 ~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~k~~~l 311 (936)
-++...+..+ ++.+.+..- ..+........++. ........
T Consensus 195 vdFl~~~Rp~~~i~vI~n~y--~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~ 272 (824)
T PF02399_consen 195 VDFLASCRPDENIHVIVNTY--ASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFF 272 (824)
T ss_pred HHHHHHhCCCCcEEEEEeee--ecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHH
Confidence 8888887554 233322210 00000000000000 01112223
Q ss_pred HHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCC
Q psy7557 312 MEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDL 391 (936)
Q Consensus 312 ~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v 391 (936)
-.++..+ ..++++-||+.|...++.+++.......++..++|.-+..+- +. -++++|++=|.++..|+++-..
T Consensus 273 ~~L~~~L-~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~--W~~~~VviYT~~itvG~Sf~~~ 345 (824)
T PF02399_consen 273 SELLARL-NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ES--WKKYDVVIYTPVITVGLSFEEK 345 (824)
T ss_pred HHHHHHH-hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----cc--ccceeEEEEeceEEEEeccchh
Confidence 3333333 457788899999999999999988888888888887665522 22 4678999999999999999654
Q ss_pred c--EEEEecCC----CCccccccCCCCcccCCCceeEEEEeccc
Q psy7557 392 T--HVINYDFP----SHIEEYVHRVGRTGRAGKSGESITLMTRK 429 (936)
Q Consensus 392 ~--~VI~~d~p----~s~~~y~qr~GRagR~g~~g~~~~~~~~~ 429 (936)
. -|.-|=-| .+..+..|++||+-.- ...+-+++++..
T Consensus 346 HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~~ 388 (824)
T PF02399_consen 346 HFDSMFAYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDAS 388 (824)
T ss_pred hceEEEEEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEecc
Confidence 3 24444222 3566789999999444 456666666644
No 299
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.11 E-value=3.7e-09 Score=121.48 Aligned_cols=274 Identities=17% Similarity=0.198 Sum_probs=171.6
Q ss_pred cEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhccCCCCEEEEEECCccchHHHH
Q psy7557 635 DMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLE 714 (936)
Q Consensus 635 d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 714 (936)
=.++.||.|||||.+..- .+..... .++.++|+++..+.|+.++.++++..+..+.....-.++.....
T Consensus 51 V~vVRSpMGTGKTtaLi~-wLk~~l~-------~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~~i~~--- 119 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIR-WLKDALK-------NPDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDYIIDG--- 119 (824)
T ss_pred eEEEECCCCCCcHHHHHH-HHHHhcc-------CCCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeeccccccccc---
Confidence 357779999999986443 3333221 35779999999999999999999875444433222111111110
Q ss_pred HHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHH-------HHhhhcCCCceEEEEEecCChH
Q psy7557 715 KIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQIN-------KTSIYINPNRQTVMTSATWNKD 787 (936)
Q Consensus 715 ~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~-------~i~~~~~~~~q~v~~SAT~~~~ 787 (936)
...+-++++.+.|..+. ...+.+.++|||||+-..+..-|.+.++ .+...+.....+|++-|++...
T Consensus 120 ---~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~ 193 (824)
T PF02399_consen 120 ---RPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQ 193 (824)
T ss_pred ---cccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHH
Confidence 12467777777776543 2246778999999998776543333332 2444456677899999999998
Q ss_pred HHHHHHHhcCC-CeEEEeCCCCcccCCceEEEEEE-----------------------------------cCcchhHHHH
Q psy7557 788 VQRVAKKYMVN-PVKVNVGSLDLAATHTVTQKIII-----------------------------------LDEDEKKDWL 831 (936)
Q Consensus 788 ~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~k~~~l 831 (936)
.-++...+..+ ++.+.++.-. .....-++.+.. ........+.
T Consensus 194 tvdFl~~~Rp~~~i~vI~n~y~-~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~ 272 (824)
T PF02399_consen 194 TVDFLASCRPDENIHVIVNTYA-SPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFF 272 (824)
T ss_pred HHHHHHHhCCCCcEEEEEeeee-cCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHH
Confidence 88888886543 3433332210 000000000000 0001122344
Q ss_pred HHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCC
Q psy7557 832 MEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDL 911 (936)
Q Consensus 832 ~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v 911 (936)
-.++... ..++++-||++|...++.++.........+..++|.-+..+- +. =++.+|++=|.++..|+++...
T Consensus 273 ~~L~~~L-~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~--W~~~~VviYT~~itvG~Sf~~~ 345 (824)
T PF02399_consen 273 SELLARL-NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ES--WKKYDVVIYTPVITVGLSFEEK 345 (824)
T ss_pred HHHHHHH-hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----cc--ccceeEEEEeceEEEEeccchh
Confidence 4444444 456778899999999999999888888888888886655522 11 3568999999999999999754
Q ss_pred CE--EEEccCC----CChhhhHhhhhhc
Q psy7557 912 TH--VINYDFP----SHIEEYVHRVGRT 933 (936)
Q Consensus 912 ~~--VI~~d~p----~s~~~yiqr~GRa 933 (936)
.. |.-|=-| .+..+..|++||.
T Consensus 346 HF~~~f~yvk~~~~gpd~~s~~Q~lgRv 373 (824)
T PF02399_consen 346 HFDSMFAYVKPMSYGPDMVSVYQMLGRV 373 (824)
T ss_pred hceEEEEEecCCCCCCcHHHHHHHHHHH
Confidence 32 3333112 3566789999996
No 300
>KOG0392|consensus
Probab=99.11 E-value=2e-09 Score=125.38 Aligned_cols=326 Identities=18% Similarity=0.214 Sum_probs=200.4
Q ss_pred CCcHHHHHHHHHH--hc--CCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhc
Q psy7557 98 TPSPIQAQAWPIL--MS--GHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 173 (936)
Q Consensus 98 ~~~~~Q~~ai~~~--~~--g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 173 (936)
.++.||++.+.-+ ++ +=+-|+|-.-|-|||+-.+--+.......+....+-...-.||+||. .|+--+..++.+|
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 4577888887653 33 34789999999999996443222222221111111122237999996 7899999999998
Q ss_pred cCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHHHhhcCC
Q psy7557 174 DYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINP 253 (936)
Q Consensus 174 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~ 253 (936)
.+. +++....|+-..+...+.--+..+|+|++.+.+.+-+. .+.-....|.|+||-|-+-+. ...+.+..+.+..
T Consensus 1054 ~pf-L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d--~l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL~a 1128 (1549)
T KOG0392|consen 1054 FPF-LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVD--YLIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQLRA 1128 (1549)
T ss_pred cch-hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHH--HHHhcccceEEecCcceecch--HHHHHHHHHHHhh
Confidence 655 67766666655444444444457999999776642211 111234569999999976432 1222222333332
Q ss_pred CCcEEEEEeccchH-HHH---HHHHhcC----------------------------------------------------
Q psy7557 254 NRQTVMTSATWNKD-VQR---VAKKYMV---------------------------------------------------- 277 (936)
Q Consensus 254 ~~q~~~~SAT~~~~-~~~---~~~~~~~---------------------------------------------------- 277 (936)
+. .+.+|.|+-.+ +.+ +..++|.
T Consensus 1129 ~h-RLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRl 1207 (1549)
T KOG0392|consen 1129 NH-RLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRL 1207 (1549)
T ss_pred cc-eEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 22 35566764211 111 1111110
Q ss_pred ------C-CEEE------E-----------------------eCCCCcccCCceEE---------------EEEEe----
Q psy7557 278 ------N-PVKV------N-----------------------VGSLDLAATHTVTQ---------------KIIIL---- 302 (936)
Q Consensus 278 ------~-~~~i------~-----------------------~~~~~~~~~~~~~~---------------~~~~~---- 302 (936)
| |..| . +.....+ ..+.++ .-.+.
T Consensus 1208 KedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S-~gt~~~HvFqaLqYlrKLcnHpaLvlt~~h 1286 (1549)
T KOG0392|consen 1208 KEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEES-LGTDKTHVFQALQYLRKLCNHPALVLTPVH 1286 (1549)
T ss_pred HHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhc-cCcchHHHHHHHHHHHHhcCCcceeeCCCc
Confidence 0 0000 0 0000000 000000 00000
Q ss_pred --------------------CchhhHHHHHHHHHhccC--------------CCCcEEEEeCchHHHHHHHHHhhhcCCc
Q psy7557 303 --------------------DEDEKKDWLMEFFDNMDE--------------ERDKVMVFMGRKASVSAMSSDLACQYRK 348 (936)
Q Consensus 303 --------------------~~~~k~~~l~~~l~~~~~--------------~~~~~iVF~~~~~~~~~l~~~L~~~~~~ 348 (936)
....|...|.+++..+.- .+++++|||.-+...+.+.+.|.+...+
T Consensus 1287 p~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mp 1366 (1549)
T KOG0392|consen 1287 PDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMP 1366 (1549)
T ss_pred chHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcC
Confidence 112345556666655421 3579999999999999999888776544
Q ss_pred ee---eecCCCCHHHHHHHHHHhhcC-CcEEEE-EecccccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCce--e
Q psy7557 349 SC---SLYGDLSQEDREIALEDITSG-YARICV-ATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSG--E 421 (936)
Q Consensus 349 ~~---~~h~~~~~~~R~~~~~~f~~g-~~~vLv-aT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g--~ 421 (936)
.. .+.|..++.+|.++.++|.++ .++||+ +|-+.+-|+|+-+.++||.++.-+++-.=+|-.-||-|-|++- .
T Consensus 1367 sVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVN 1446 (1549)
T KOG0392|consen 1367 SVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVN 1446 (1549)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeee
Confidence 33 477999999999999999998 788876 6789999999999999999999999988899999999999774 4
Q ss_pred EEEEecccCh
Q psy7557 422 SITLMTRKDW 431 (936)
Q Consensus 422 ~~~~~~~~~~ 431 (936)
.+-+++....
T Consensus 1447 VyRlItrGTL 1456 (1549)
T KOG0392|consen 1447 VYRLITRGTL 1456 (1549)
T ss_pred eeeehhcccH
Confidence 5666776643
No 301
>KOG1000|consensus
Probab=99.10 E-value=1.7e-08 Score=107.33 Aligned_cols=300 Identities=14% Similarity=0.183 Sum_probs=185.1
Q ss_pred CCCcHHHHHHHHhhh-cCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhccC
Q psy7557 617 TTPSPIQAQAWPILM-SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDY 695 (936)
Q Consensus 617 ~~p~~iQ~~ai~~~l-~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 695 (936)
..+.|+|.+.+...+ +|..+++.-.-|-|||+-++.-+- ... ... -.||+||.. |-..+.+.+.+|..
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~-yyr--------aEw-plliVcPAs-vrftWa~al~r~lp 265 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIAR-YYR--------AEW-PLLIVCPAS-VRFTWAKALNRFLP 265 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHH-HHh--------hcC-cEEEEecHH-HhHHHHHHHHHhcc
Confidence 355799999988766 677888888999999997653222 221 122 368999963 34568888888755
Q ss_pred CCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHHHhhhcCCCc
Q psy7557 696 KGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNR 775 (936)
Q Consensus 696 ~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~~~~~ 775 (936)
.-..+..+.++.+.... +-....|.|.+.+.+..+-. .+.-...++||+||+|.+-+ +-......+...+..-.
T Consensus 266 s~~pi~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~-sktkr~Ka~~dllk~ak 339 (689)
T KOG1000|consen 266 SIHPIFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKD-SKTKRTKAATDLLKVAK 339 (689)
T ss_pred cccceEEEecccCCccc---cccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhc-cchhhhhhhhhHHHHhh
Confidence 54456666665543322 22335788888877644321 22234578999999996543 33333444444455556
Q ss_pred eEEEEEecCC----h---------------HHHHHHHHhcC-CCeEEEeCCCCc-------------------------c
Q psy7557 776 QTVMTSATWN----K---------------DVQRVAKKYMV-NPVKVNVGSLDL-------------------------A 810 (936)
Q Consensus 776 q~v~~SAT~~----~---------------~~~~~~~~~~~-~~~~i~~~~~~~-------------------------~ 810 (936)
+++++|.|+. . +...++.+|.. ..+.+....... .
T Consensus 340 hvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~q 419 (689)
T KOG1000|consen 340 HVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQ 419 (689)
T ss_pred heEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7899999952 1 11122223221 111111110000 0
Q ss_pred cCCceEEEEEEcCc---------------------c----------------hhHHHHHHHHHh----ccCCCCcEEEEc
Q psy7557 811 ATHTVTQKIIILDE---------------------D----------------EKKDWLMEFFDN----MDEERDKVMVFM 849 (936)
Q Consensus 811 ~~~~~~~~~~~~~~---------------------~----------------~k~~~l~~~l~~----~~~~~~~~iIF~ 849 (936)
.+...++.++.+.. . .|...+.+.+.. ......+.+|||
T Consensus 420 LPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFa 499 (689)
T KOG1000|consen 420 LPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFA 499 (689)
T ss_pred CCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEe
Confidence 01111111111111 0 111112222222 123456899999
Q ss_pred CChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcC-CCcEE-EecccCccCCCCCCCCEEEEccCCCChh---
Q psy7557 850 GRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSG-YARIC-VATDVASRGLDVPDLTHVINYDFPSHIE--- 924 (936)
Q Consensus 850 ~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g-~~~vL-VaT~~~~~Gidip~v~~VI~~d~p~s~~--- 924 (936)
......+.+-..+...+.+..-+.|..+..+|...-+.|... +++|- ++-.+++.|+++.+.+.||...++.++.
T Consensus 500 HH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLl 579 (689)
T KOG1000|consen 500 HHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLL 579 (689)
T ss_pred hhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEE
Confidence 999999999999999999999999999999999999999854 34443 3446789999999999999999988754
Q ss_pred ---hhHhhhhhc
Q psy7557 925 ---EYVHRVGRT 933 (936)
Q Consensus 925 ---~yiqr~GRa 933 (936)
+-+||+|-+
T Consensus 580 QAEDRaHRiGQk 591 (689)
T KOG1000|consen 580 QAEDRAHRIGQK 591 (689)
T ss_pred echhhhhhcccc
Confidence 455666643
No 302
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.10 E-value=1.3e-09 Score=126.08 Aligned_cols=318 Identities=21% Similarity=0.244 Sum_probs=195.4
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHh-
Q psy7557 94 LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK- 172 (936)
Q Consensus 94 ~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~- 172 (936)
+|. .|..+|.-+--.+..| -++-+.||-|||+++.+|+....+ .|..+.++...--||.--..++..
T Consensus 77 lg~-~~~dVQliG~i~lh~g--~iaEM~TGEGKTL~atlp~ylnaL---------~gkgVhvVTvNdYLA~RDae~m~~l 144 (822)
T COG0653 77 LGM-RHFDVQLLGGIVLHLG--DIAEMRTGEGKTLVATLPAYLNAL---------AGKGVHVVTVNDYLARRDAEWMGPL 144 (822)
T ss_pred cCC-ChhhHHHhhhhhhcCC--ceeeeecCCchHHHHHHHHHHHhc---------CCCCcEEeeehHHhhhhCHHHHHHH
Confidence 455 6777776655555444 488999999999999999886553 355678888888898877777777
Q ss_pred ccCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchh-HHHHHcC------CcCCCCceEEEEccchhhh-c-------
Q psy7557 173 IDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRL-NDFVSRA------SIDLKAVSFVVLDEADRML-D------- 237 (936)
Q Consensus 173 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~------~~~~~~~~~lViDEah~l~-~------- 237 (936)
+...|+.+++...+.+........ .|||..+|...+ .|.+..+ ......+.+-|+||+|-++ |
T Consensus 145 ~~~LGlsvG~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLi 222 (822)
T COG0653 145 YEFLGLSVGVILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLI 222 (822)
T ss_pred HHHcCCceeeccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeecccccee
Confidence 467899999998888655443333 489999998776 2222221 1224468899999999764 1
Q ss_pred -CC-------CHHHHHHHHhhcCCC--------CcEEEEEec--------------------------------------
Q psy7557 238 -LG-------FEPQINKTSIYINPN--------RQTVMTSAT-------------------------------------- 263 (936)
Q Consensus 238 -~~-------~~~~~~~i~~~~~~~--------~q~~~~SAT-------------------------------------- 263 (936)
.| .+..+..+...+... .+.+.++-.
T Consensus 223 ISG~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~ 302 (822)
T COG0653 223 ISGPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFR 302 (822)
T ss_pred eecccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhc
Confidence 11 123333333222211 111111110
Q ss_pred -----------------------------------------------------------------------cchHHHHHH
Q psy7557 264 -----------------------------------------------------------------------WNKDVQRVA 272 (936)
Q Consensus 264 -----------------------------------------------------------------------~~~~~~~~~ 272 (936)
...+..++.
T Consensus 303 D~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~ 382 (822)
T COG0653 303 DVDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFD 382 (822)
T ss_pred CCeeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhh
Confidence 000011111
Q ss_pred HHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeee
Q psy7557 273 KKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSL 352 (936)
Q Consensus 273 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~ 352 (936)
..|..+.+.+.....- ...-....++.....|...+.+.+......+.|+||-+.+....+.+++.|...+++...+
T Consensus 383 ~iY~l~vv~iPTnrp~---~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VL 459 (822)
T COG0653 383 VIYGLDVVVIPTNRPI---IRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVL 459 (822)
T ss_pred hccCCceeeccCCCcc---cCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceee
Confidence 1111111111100000 0000111233445678888888887777889999999999999999999999999988777
Q ss_pred cCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCc-----------EEEEecCCCCccccccCCCCcccCCCcee
Q psy7557 353 YGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLT-----------HVINYDFPSHIEEYVHRVGRTGRAGKSGE 421 (936)
Q Consensus 353 h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~-----------~VI~~d~p~s~~~y~qr~GRagR~g~~g~ 421 (936)
.+.-. .|+.-+-...--.-.|-|||+.++||-||.--. +||--.--.|..-=-|-.||+||.|-+|.
T Consensus 460 NAk~h--~~EA~Iia~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~ 537 (822)
T COG0653 460 NAKNH--AREAEIIAQAGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGS 537 (822)
T ss_pred ccccH--HHHHHHHhhcCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcch
Confidence 66554 333333333322334889999999999985332 23333222333334588999999999999
Q ss_pred EEEEecccC
Q psy7557 422 SITLMTRKD 430 (936)
Q Consensus 422 ~~~~~~~~~ 430 (936)
+-.|++-.|
T Consensus 538 S~F~lSleD 546 (822)
T COG0653 538 SRFYLSLED 546 (822)
T ss_pred hhhhhhhHH
Confidence 988887654
No 303
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.08 E-value=2.6e-08 Score=109.11 Aligned_cols=261 Identities=18% Similarity=0.211 Sum_probs=175.5
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhccCCCCEE------EEEEC--------------CccchHHHHHHh-----------
Q psy7557 669 AGPSVLVMAPTRELATQIEREVNKIDYKGLKA------VCVYG--------------GKELEPQLEKIR----------- 717 (936)
Q Consensus 669 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~------~~~~g--------------g~~~~~~~~~l~----------- 717 (936)
..|+||||+|+|.-|.++.+.+.++...+..+ ..-+| ..........+.
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 46899999999999999888777653221000 00011 011111222221
Q ss_pred --------------cCceEEEeCchHHHHHHHc------CCCCCCCceEEEEcccchhccCCCHHHHHHHhhhc---CC-
Q psy7557 718 --------------EGCHILIATPGRLNDFVSR------ASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYI---NP- 773 (936)
Q Consensus 718 --------------~~~~IiV~Tp~~l~~~l~~------~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~---~~- 773 (936)
.++|||||+|=-|...+.. ....++.+.++|+|.||.|+-..|. .+..++..+ |.
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~-Hv~~v~~~lN~~P~~ 194 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWE-HVLHVFEHLNLQPKK 194 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHH-HHHHHHHHhccCCCC
Confidence 1379999999988877764 2345899999999999987654432 333333333 21
Q ss_pred --------------------CceEEEEEecCChHHHHHHHHhcCCC---eEEEeCCCC----cccCCceEEEEEEcCc--
Q psy7557 774 --------------------NRQTVMTSATWNKDVQRVAKKYMVNP---VKVNVGSLD----LAATHTVTQKIIILDE-- 824 (936)
Q Consensus 774 --------------------~~q~v~~SAT~~~~~~~~~~~~~~~~---~~i~~~~~~----~~~~~~~~~~~~~~~~-- 824 (936)
-+|+|++|+...+++..+......|. +.+...... ......+.|.+...+.
T Consensus 195 ~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s 274 (442)
T PF06862_consen 195 SHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSS 274 (442)
T ss_pred CCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCC
Confidence 26999999999999999888865543 222211110 1223345555554332
Q ss_pred -----chhHHHHHH-HHHhc--cCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEE
Q psy7557 825 -----DEKKDWLME-FFDNM--DEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARIC 896 (936)
Q Consensus 825 -----~~k~~~l~~-~l~~~--~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vL 896 (936)
+.+.++..+ ++-.+ ....+.+|||++|--.--.+-..|+......+.+|.-.++.+-.++-..|..|+.+||
T Consensus 275 ~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iL 354 (442)
T PF06862_consen 275 PADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPIL 354 (442)
T ss_pred cchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEE
Confidence 233333222 22222 2456889999999999999999999999999999999999999999999999999999
Q ss_pred Eeccc--CccCCCCCCCCEEEEccCCCChhhhHhhh
Q psy7557 897 VATDV--ASRGLDVPDLTHVINYDFPSHIEEYVHRV 930 (936)
Q Consensus 897 VaT~~--~~~Gidip~v~~VI~~d~p~s~~~yiqr~ 930 (936)
+-|.= .=+=..+.++.+||.|.+|..+.=|-..+
T Consensus 355 L~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~ 390 (442)
T PF06862_consen 355 LYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELL 390 (442)
T ss_pred EEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHH
Confidence 99963 34557788999999999998876665443
No 304
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.06 E-value=4.7e-08 Score=117.92 Aligned_cols=74 Identities=22% Similarity=0.227 Sum_probs=60.1
Q ss_pred CCCCCCcHHHHHHHHhhh----cCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHH
Q psy7557 614 LSFTTPSPIQAQAWPILM----SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIERE 689 (936)
Q Consensus 614 ~g~~~p~~iQ~~ai~~~l----~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~ 689 (936)
+.|..++|.|.+.+..+. .|.++++.||||+|||++.+.|++.+.... +..++++|.+.|..=..|+.++
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~------~~~~kIiy~sRThsQl~q~i~E 79 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEK------PEVRKIIYASRTHSQLEQATEE 79 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhc------cccccEEEEcccchHHHHHHHH
Confidence 457677999999887655 678999999999999999999998765422 2346899999999888888888
Q ss_pred HHhc
Q psy7557 690 VNKI 693 (936)
Q Consensus 690 ~~~~ 693 (936)
+++.
T Consensus 80 lk~~ 83 (705)
T TIGR00604 80 LRKL 83 (705)
T ss_pred HHhh
Confidence 8874
No 305
>KOG0389|consensus
Probab=99.04 E-value=1e-08 Score=115.04 Aligned_cols=108 Identities=21% Similarity=0.271 Sum_probs=91.1
Q ss_pred hhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCC--CcEEEecccCc
Q psy7557 826 EKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGY--ARICVATDVAS 903 (936)
Q Consensus 826 ~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~--~~vLVaT~~~~ 903 (936)
.|...|..++......+.+++||..--...+-|-..|..+++.-.-+.|...-.+|...++.|...+ .-.|.+|.+.+
T Consensus 761 gK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG 840 (941)
T KOG0389|consen 761 GKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGG 840 (941)
T ss_pred hhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCc
Confidence 4566777778777777899999988877788888889999999999999999999999999998765 35789999999
Q ss_pred cCCCCCCCCEEEEccCCCC------hhhhHhhhhhc
Q psy7557 904 RGLDVPDLTHVINYDFPSH------IEEYVHRVGRT 933 (936)
Q Consensus 904 ~Gidip~v~~VI~~d~p~s------~~~yiqr~GRa 933 (936)
-|||+-..++||.+|+-.+ .++=.||+|-+
T Consensus 841 ~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQt 876 (941)
T KOG0389|consen 841 FGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQT 876 (941)
T ss_pred ceecccccceEEEeecCCCCcccchhHHHHHhhCCc
Confidence 9999999999999998644 45566777753
No 306
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.02 E-value=1e-09 Score=99.70 Aligned_cols=136 Identities=16% Similarity=0.134 Sum_probs=80.0
Q ss_pred cCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhccCCCCEEEEEECCccchH
Q psy7557 632 SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEP 711 (936)
Q Consensus 632 ~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~ 711 (936)
+|+-.++-..+|+|||.-.+--++.... ..+.++|+|.|||.++..+.+.++.. .++.....-+ .
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i--------~~~~rvLvL~PTRvva~em~~aL~~~---~~~~~t~~~~---~- 67 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAI--------KRRLRVLVLAPTRVVAEEMYEALKGL---PVRFHTNARM---R- 67 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHH--------HTT--EEEEESSHHHHHHHHHHTTTS---SEEEESTTSS-----
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHH--------HccCeEEEecccHHHHHHHHHHHhcC---CcccCceeee---c-
Confidence 3455678899999999875544444333 35779999999999999999988764 2222111100 0
Q ss_pred HHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCC--CHHHHHHHhhhcCCCceEEEEEecCChHH
Q psy7557 712 QLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLG--FEPQINKTSIYINPNRQTVMTSATWNKDV 788 (936)
Q Consensus 712 ~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~--~~~~~~~i~~~~~~~~q~v~~SAT~~~~~ 788 (936)
....+.-|-|+|-..+...+.+ .....+++++|+||||..-... ++..+..... .....+|++|||.|...
T Consensus 68 ---~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~--~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 68 ---THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLRELAE--SGEAKVIFMTATPPGSE 140 (148)
T ss_dssp ------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHH--TTS-EEEEEESS-TT--
T ss_pred ---cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHHhhh--ccCeeEEEEeCCCCCCC
Confidence 1113346778898888777766 5567899999999999643221 2222222211 23467999999998654
No 307
>KOG0392|consensus
Probab=99.01 E-value=9.3e-09 Score=120.03 Aligned_cols=309 Identities=17% Similarity=0.199 Sum_probs=183.7
Q ss_pred CcHHHHHHHHhh--hc--CCcEEEEecCCCCcchhhHHHHH-HHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc
Q psy7557 619 PSPIQAQAWPIL--MS--GHDMIGIAQTGTGKTFAFLLPAL-IHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693 (936)
Q Consensus 619 p~~iQ~~ai~~~--l~--g~d~i~~apTGsGKTl~~~lp~l-~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 693 (936)
++.||++.+..+ ++ +=+.|+|-.-|-|||+-.+.-+. .+... .....+-...-.||+||. .|+--+..++.+|
T Consensus 976 LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r-~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 976 LRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKR-RSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhh-cccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 467899987654 33 34889999999999986432221 22211 111111122237999995 7888899999998
Q ss_pred cCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHHHhhhcCC
Q psy7557 694 DYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINP 773 (936)
Q Consensus 694 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~~~ 773 (936)
... +++....|+-......+.--++++|+|++.+.+..-+. .+.-..+.|.|+||-|-+-.. ...+.+-...++.
T Consensus 1054 ~pf-L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d--~l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL~a 1128 (1549)
T KOG0392|consen 1054 FPF-LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVD--YLIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQLRA 1128 (1549)
T ss_pred cch-hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHH--HHHhcccceEEecCcceecch--HHHHHHHHHHHhh
Confidence 654 67666666544443333333457999999877653221 111234569999999965322 2223333333333
Q ss_pred CceEEEEEecCCh-HHHH---HHHHhcCC---------------------------------------------------
Q psy7557 774 NRQTVMTSATWNK-DVQR---VAKKYMVN--------------------------------------------------- 798 (936)
Q Consensus 774 ~~q~v~~SAT~~~-~~~~---~~~~~~~~--------------------------------------------------- 798 (936)
+.+ +.+|.|+-. ++.+ +..++|..
T Consensus 1129 ~hR-LILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRl 1207 (1549)
T KOG0392|consen 1129 NHR-LILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRL 1207 (1549)
T ss_pred cce-EEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 333 566777421 1111 11111100
Q ss_pred --------C------eEEEeC-----------------------CCCcccCCc---e----------E-E-EEEEc----
Q psy7557 799 --------P------VKVNVG-----------------------SLDLAATHT---V----------T-Q-KIIIL---- 822 (936)
Q Consensus 799 --------~------~~i~~~-----------------------~~~~~~~~~---~----------~-~-~~~~~---- 822 (936)
| ..+..+ ......... + . + ..+..
T Consensus 1208 KedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp 1287 (1549)
T KOG0392|consen 1208 KEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHP 1287 (1549)
T ss_pred HHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcc
Confidence 0 000000 000000000 0 0 0 00011
Q ss_pred -------------------CcchhHHHHHHHHHhccC--------------CCCcEEEEcCChHHHHHHHHHHHhcCCce
Q psy7557 823 -------------------DEDEKKDWLMEFFDNMDE--------------ERDKVMVFMGRKASVSAMSSDLACQYRKS 869 (936)
Q Consensus 823 -------------------~~~~k~~~l~~~l~~~~~--------------~~~~~iIF~~s~~~~~~l~~~L~~~~~~~ 869 (936)
....|...|.+++..+.- ...+++|||.-+...+.+...|.+...+.
T Consensus 1288 ~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mps 1367 (1549)
T KOG0392|consen 1288 DLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPS 1367 (1549)
T ss_pred hHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCc
Confidence 112355566666655421 24689999999999999999987665443
Q ss_pred -E--EEeCCCCHHHHHHHHHHhhcC-CCcEE-EecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccC
Q psy7557 870 -C--SLYGDLSQEDREIALEDITSG-YARIC-VATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGE 935 (936)
Q Consensus 870 -~--~~h~~l~~~~R~~~~~~F~~g-~~~vL-VaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR 935 (936)
. .+.|..++.+|.++.++|.++ .++|| .+|-|.+-|+|+-+.+.||.++--.++-.=+|-+-||-|
T Consensus 1368 VtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHR 1438 (1549)
T KOG0392|consen 1368 VTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHR 1438 (1549)
T ss_pred eeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHh
Confidence 3 478999999999999999999 67776 566899999999999999998877666555666666655
No 308
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.01 E-value=7.4e-10 Score=100.60 Aligned_cols=136 Identities=16% Similarity=0.140 Sum_probs=79.6
Q ss_pred cCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhccCCCCEEEEEeCCccchH
Q psy7557 112 SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEP 191 (936)
Q Consensus 112 ~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~ 191 (936)
.|+-.++-..+|+|||--.+--++.... ..+.++|||.|||.++..+++.++.. ++++..-..+.
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i--------~~~~rvLvL~PTRvva~em~~aL~~~---~~~~~t~~~~~---- 67 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAI--------KRRLRVLVLAPTRVVAEEMYEALKGL---PVRFHTNARMR---- 67 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHH--------HTT--EEEEESSHHHHHHHHHHTTTS---SEEEESTTSS-----
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHH--------HccCeEEEecccHHHHHHHHHHHhcC---CcccCceeeec----
Confidence 3445677899999999975544444333 35679999999999999999999763 22222111110
Q ss_pred HHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCC--CHHHHHHHHhhcCCCCcEEEEEeccchHH
Q psy7557 192 QLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLG--FEPQINKTSIYINPNRQTVMTSATWNKDV 268 (936)
Q Consensus 192 ~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~--~~~~~~~i~~~~~~~~q~~~~SAT~~~~~ 268 (936)
....+.-|-|.|-+.+.+.+.+ .....+.+++|+||||-.--.. +...+..... .....+|++|||+|...
T Consensus 68 ---~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~--~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 68 ---THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLRELAE--SGEAKVIFMTATPPGSE 140 (148)
T ss_dssp ------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHH--TTS-EEEEEESS-TT--
T ss_pred ---cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHHhhh--ccCeeEEEEeCCCCCCC
Confidence 1113355778888888777766 5557899999999999632111 2222332221 23467999999998544
No 309
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.00 E-value=1e-08 Score=120.37 Aligned_cols=114 Identities=21% Similarity=0.193 Sum_probs=92.2
Q ss_pred EEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEec
Q psy7557 820 IILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVAT 899 (936)
Q Consensus 820 ~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT 899 (936)
++.....|...+++-+......+.|+||-+.|+...+.++..|...+++...+++.....+-..+-+.=+ .-.|-|||
T Consensus 606 vy~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~--~GaVTIAT 683 (1112)
T PRK12901 606 VYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQ--PGTVTIAT 683 (1112)
T ss_pred EecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCC--CCcEEEec
Confidence 4556678888888888887788999999999999999999999999988777777644443333333222 34799999
Q ss_pred ccCccCCCCC--------CCCEEEEccCCCChhhhHhhhhhccC
Q psy7557 900 DVASRGLDVP--------DLTHVINYDFPSHIEEYVHRVGRTGE 935 (936)
Q Consensus 900 ~~~~~Gidip--------~v~~VI~~d~p~s~~~yiqr~GRaGR 935 (936)
+.++||-||. +=-+||-...+.|..---|-.||+||
T Consensus 684 NMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGR 727 (1112)
T PRK12901 684 NMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGR 727 (1112)
T ss_pred cCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhccccc
Confidence 9999999997 33579999999999999999999999
No 310
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.91 E-value=1.4e-08 Score=108.06 Aligned_cols=76 Identities=24% Similarity=0.255 Sum_probs=57.3
Q ss_pred CCCCCCcHHHHHHHH----hhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHH
Q psy7557 614 LSFTTPSPIQAQAWP----ILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIERE 689 (936)
Q Consensus 614 ~g~~~p~~iQ~~ai~----~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~ 689 (936)
+.| .|+|.|.+.+. .+..|.++++.||||+|||++|++|++.+...... ...+.+++|.++|..+..|....
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~---~~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00488 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPE---RIQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcc---cccccceeEEeccHHHHHHHHHH
Confidence 345 46999999554 45578999999999999999999999876643211 01235899999999998887666
Q ss_pred HHhc
Q psy7557 690 VNKI 693 (936)
Q Consensus 690 ~~~~ 693 (936)
+++.
T Consensus 81 l~~~ 84 (289)
T smart00488 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 6553
No 311
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.91 E-value=1.4e-08 Score=108.06 Aligned_cols=76 Identities=24% Similarity=0.255 Sum_probs=57.3
Q ss_pred CCCCCCcHHHHHHHH----hhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHH
Q psy7557 614 LSFTTPSPIQAQAWP----ILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIERE 689 (936)
Q Consensus 614 ~g~~~p~~iQ~~ai~----~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~ 689 (936)
+.| .|+|.|.+.+. .+..|.++++.||||+|||++|++|++.+...... ...+.+++|.++|..+..|....
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~---~~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00489 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPE---RIQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcc---cccccceeEEeccHHHHHHHHHH
Confidence 345 46999999554 45578999999999999999999999876643211 01235899999999998887666
Q ss_pred HHhc
Q psy7557 690 VNKI 693 (936)
Q Consensus 690 ~~~~ 693 (936)
+++.
T Consensus 81 l~~~ 84 (289)
T smart00489 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 6553
No 312
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.88 E-value=1.4e-08 Score=108.15 Aligned_cols=73 Identities=25% Similarity=0.226 Sum_probs=56.5
Q ss_pred CCcHHHHHHHH----HHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhc
Q psy7557 98 TPSPIQAQAWP----ILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 173 (936)
Q Consensus 98 ~~~~~Q~~ai~----~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 173 (936)
.|+|.|.+.+. .+..|.++++.||||+|||+++++|++......... ..+.+++|.++|..+..|....++++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~---~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER---IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc---ccccceeEEeccHHHHHHHHHHHHhc
Confidence 57999999554 455788999999999999999999998766432110 12348999999999988887777654
No 313
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.88 E-value=1.4e-08 Score=108.15 Aligned_cols=73 Identities=25% Similarity=0.226 Sum_probs=56.5
Q ss_pred CCcHHHHHHHH----HHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhc
Q psy7557 98 TPSPIQAQAWP----ILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 173 (936)
Q Consensus 98 ~~~~~Q~~ai~----~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 173 (936)
.|+|.|.+.+. .+..|.++++.||||+|||+++++|++......... ..+.+++|.++|..+..|....++++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~---~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER---IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc---ccccceeEEeccHHHHHHHHHHHHhc
Confidence 57999999554 455788999999999999999999998766432110 12348999999999988887777654
No 314
>KOG0386|consensus
Probab=98.81 E-value=1.6e-08 Score=116.22 Aligned_cols=123 Identities=19% Similarity=0.187 Sum_probs=106.9
Q ss_pred hhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCC---cEEEEEecc
Q psy7557 305 DEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGY---ARICVATDV 381 (936)
Q Consensus 305 ~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~---~~vLvaT~~ 381 (936)
..|+..|-.++-.+...+++++.||.-..--..+-.+|.-.+++..-+.|.....+|-..++.|..-. ...|.+|-.
T Consensus 709 sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstra 788 (1157)
T KOG0386|consen 709 SGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRA 788 (1157)
T ss_pred ccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecc
Confidence 45677777777777788999999999888888888999999999999999999999999999997643 447789999
Q ss_pred cccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEec
Q psy7557 382 ASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMT 427 (936)
Q Consensus 382 ~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~ 427 (936)
.+.|+|+-..+.||.||.-+++..+.|+--||-|-|..-.+-++..
T Consensus 789 gglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl 834 (1157)
T KOG0386|consen 789 GGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRL 834 (1157)
T ss_pred cccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeee
Confidence 9999999999999999999999999999999999988765555443
No 315
>KOG0386|consensus
Probab=98.80 E-value=2.8e-08 Score=114.38 Aligned_cols=111 Identities=17% Similarity=0.172 Sum_probs=95.3
Q ss_pred chhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCC---CcEEEeccc
Q psy7557 825 DEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGY---ARICVATDV 901 (936)
Q Consensus 825 ~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~---~~vLVaT~~ 901 (936)
..|+.+|-.++-++...+++++.||.-..-..-+..+|.-..+.-.-+.|.....+|-..++.|..-. ...|.+|-.
T Consensus 709 sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstra 788 (1157)
T KOG0386|consen 709 SGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRA 788 (1157)
T ss_pred ccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecc
Confidence 45667777777777777899999999988888888899888888889999999999999999997644 457899999
Q ss_pred CccCCCCCCCCEEEEccCCCChhhhHhhhhhccC
Q psy7557 902 ASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGE 935 (936)
Q Consensus 902 ~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR 935 (936)
.+.|+|+-..+.||.||.-.++....|+--||-|
T Consensus 789 gglglNlQtadtviifdsdwnp~~d~qaqdrahr 822 (1157)
T KOG0386|consen 789 GGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHR 822 (1157)
T ss_pred cccccchhhcceEEEecCCCCchhHHHHHHHHHH
Confidence 9999999999999999999888888877776654
No 316
>KOG2340|consensus
Probab=98.75 E-value=1.5e-07 Score=101.26 Aligned_cols=340 Identities=17% Similarity=0.192 Sum_probs=214.7
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEecC-CCCc--chhchHHHHHHhhcCCC-------C-C--------------CCCCCC
Q psy7557 97 TTPSPIQAQAWPILMSGHDMIGIAQT-GTGK--TFAFLLPALIHTHLQTT-------P-I--------------SERAGP 151 (936)
Q Consensus 97 ~~~~~~Q~~ai~~~~~g~d~l~~apT-GsGK--T~~~~lp~l~~~~~~~~-------~-~--------------~~~~~~ 151 (936)
..+|+.|.+.+..+.+-+|++..-.| +.|+ +-+|.+-++.|++..+. . . ..-..|
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 35799999999999999998875322 4555 45677778887754211 0 0 011358
Q ss_pred EEEEEcCcHHHHHHHHHHHHhc-cCC-CCE--------EEEEeCCcc--------chHHHH-------------------
Q psy7557 152 SVLVMAPTRELATQIEREVNKI-DYK-GLK--------AVCVYGGKE--------IEPQLE------------------- 194 (936)
Q Consensus 152 ~~lil~Pt~~La~Q~~~~~~~~-~~~-~~~--------~~~~~gg~~--------~~~~~~------------------- 194 (936)
+|||+||+|+-|..+.+.+..+ .+. .-+ ...-|+|.. ......
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 9999999999999999888775 211 101 111233311 000011
Q ss_pred ---Hh---hcCCcEEEeCCchhHHHHHcC------CcCCCCceEEEEccchhhhcCCCHHHHHHHHhhc---CC------
Q psy7557 195 ---KI---REGCHILIATPGRLNDFVSRA------SIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYI---NP------ 253 (936)
Q Consensus 195 ---~~---~~~~~Iiv~Tp~~l~~~l~~~------~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~---~~------ 253 (936)
++ ....||+||+|--|.-++... .-.++.+.++|||-||.|+...+. .+..++..+ |.
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwE-hl~~ifdHLn~~P~k~h~~D 453 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWE-HLLHIFDHLNLQPSKQHDVD 453 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHH-HHHHHHHHhhcCcccccCCC
Confidence 11 124799999998886555521 223788999999999988765433 333343333 21
Q ss_pred ---------------CCcEEEEEeccchHHHHHHHHhcCCCEEEEeC-------CCCcccCCceEE---EEEEeC----c
Q psy7557 254 ---------------NRQTVMTSATWNKDVQRVAKKYMVNPVKVNVG-------SLDLAATHTVTQ---KIIILD----E 304 (936)
Q Consensus 254 ---------------~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~-------~~~~~~~~~~~~---~~~~~~----~ 304 (936)
-+|+++||+--.+....+...++.|..--... ... .....+.| .+.+-+ .
T Consensus 454 fSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~-~v~~~l~Qvf~ri~~~si~~~~ 532 (698)
T KOG2340|consen 454 FSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSIS-NVGIPLCQVFQRIEVKSIIETP 532 (698)
T ss_pred hhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchh-hccchhhhhhhheeccCcccCc
Confidence 14899999988877777777776553211100 000 00111222 222111 2
Q ss_pred hhhHHHHHHHH-Hhc-cCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecc-
Q psy7557 305 DEKKDWLMEFF-DNM-DEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDV- 381 (936)
Q Consensus 305 ~~k~~~l~~~l-~~~-~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~- 381 (936)
+.++......+ -.+ .....-+||+.++-..-..+-.++....+....+|---++..-.++-+.|-.|...||+-|.-
T Consensus 533 D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~ 612 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERA 612 (698)
T ss_pred hHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhh
Confidence 23333333222 111 123456799999999999999999988877666665555666667778899999999999964
Q ss_pred -cccCCCCCCCcEEEEecCCCCcccc---ccCCCCcccCCC----ceeEEEEecccChhhHHhHH
Q psy7557 382 -ASRGLDVPDLTHVINYDFPSHIEEY---VHRVGRTGRAGK----SGESITLMTRKDWSHAHEII 438 (936)
Q Consensus 382 -~~~GiDip~v~~VI~~d~p~s~~~y---~qr~GRagR~g~----~g~~~~~~~~~~~~~~~~l~ 438 (936)
.=|-.++.+|..||.|.+|..+.=| +.+.||+.-.|+ .-.|.+++++-|.-.+..++
T Consensus 613 hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~iv 677 (698)
T KOG2340|consen 613 HFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIV 677 (698)
T ss_pred hhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhh
Confidence 4567899999999999999987654 777777764442 35788888888866655554
No 317
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.75 E-value=7.7e-08 Score=104.66 Aligned_cols=145 Identities=17% Similarity=0.157 Sum_probs=81.3
Q ss_pred CCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhccCC-CCEEEEEECCccchH
Q psy7557 633 GHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKELEP 711 (936)
Q Consensus 633 g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~-~~~~~~~~gg~~~~~ 711 (936)
.+..+++-.+|+|||+..+..+. .+..... ......+||+||. .+..|+..++.++... ..++....|+.....
T Consensus 25 ~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~---~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~ 99 (299)
T PF00176_consen 25 PRGGLLADEMGLGKTITAIALIS-YLKNEFP---QRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRR 99 (299)
T ss_dssp T-EEEE---TTSSHHHHHHHHHH-HHHHCCT---TSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHH
T ss_pred CCCEEEEECCCCCchhhhhhhhh-hhhhccc---cccccceeEeecc-chhhhhhhhhcccccccccccccccccccccc
Confidence 35788889999999987665443 2222110 1122359999999 8889999999998643 566666655541222
Q ss_pred HHHHHhcCceEEEeCchHHHHHHHcC---CCCCCCceEEEEcccchhccCCCHHHHHHHhhhcCCCceEEEEEecCC
Q psy7557 712 QLEKIREGCHILIATPGRLNDFVSRA---SIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWN 785 (936)
Q Consensus 712 ~~~~l~~~~~IiV~Tp~~l~~~l~~~---~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~ 785 (936)
.........+++|+|.+.+...-... .+.--++++||+||+|.+-+.. ......+.. +. ....+++|||+-
T Consensus 100 ~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~-s~~~~~l~~-l~-~~~~~lLSgTP~ 173 (299)
T PF00176_consen 100 LSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKD-SKRYKALRK-LR-ARYRWLLSGTPI 173 (299)
T ss_dssp TTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTT-SHHHHHHHC-CC-ECEEEEE-SS-S
T ss_pred ccccccccceeeeccccccccccccccccccccccceeEEEeccccccccc-ccccccccc-cc-cceEEeeccccc
Confidence 21222334789999999887110000 1111348899999999984322 223333333 44 556788999963
No 318
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.74 E-value=9.4e-08 Score=98.69 Aligned_cols=190 Identities=21% Similarity=0.326 Sum_probs=121.0
Q ss_pred hhcccCCccccccCcCCccccCCCHHHHHHHHhhCCCceEEeecCCCccCCCCCCCCCCccc-ChHHhhcCCHHHHHHH-
Q psy7557 14 DKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVT-SFKQAFQHYPEILRQL- 91 (936)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~-~f~~~~~~~~~l~~~l- 91 (936)
....++.++...+....+..+.+++++...+......-. ..+ .... ...+++. -+.+..
T Consensus 11 ~~lk~~~~~~~~i~~~~~~~~~ls~~~L~~~~~~~~~~~-----~~~-----------~~~~~~l~e~~A---l~rea~~ 71 (266)
T PF07517_consen 11 RELKRYQKIVDKINALEKELKALSDEELQEKTKELRERL-----REG-----------ESLDDILPEAFA---LVREAAR 71 (266)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHTTSHHHHHHHHHHHHHHH-----HTT-----------THHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----hhh-----------hhhHHHHHHHHH---HHHHHHH
Confidence 333444445555555567888899988876654322000 000 0000 0011111 122222
Q ss_pred HhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHH
Q psy7557 92 ENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVN 171 (936)
Q Consensus 92 ~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~ 171 (936)
+..|+ .|++.|.-++-.+..|+ |+...||-|||++..+|++...+ .|..|=|++.+..||..=++.+.
T Consensus 72 r~~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL---------~G~~V~vvT~NdyLA~RD~~~~~ 139 (266)
T PF07517_consen 72 RTLGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNAL---------QGKGVHVVTSNDYLAKRDAEEMR 139 (266)
T ss_dssp HHTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHT---------TSS-EEEEESSHHHHHHHHHHHH
T ss_pred HHcCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHH---------hcCCcEEEeccHHHhhccHHHHH
Confidence 24666 89999999998887777 99999999999999998887664 36678999999999999888888
Q ss_pred h-ccCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhH-HHHHcCC------cCCCCceEEEEccchhhh
Q psy7557 172 K-IDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLN-DFVSRAS------IDLKAVSFVVLDEADRML 236 (936)
Q Consensus 172 ~-~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~-~~l~~~~------~~~~~~~~lViDEah~l~ 236 (936)
. |...|+++.+++++.+....... -.++|+++|...+. |.|.... .....+.++||||||.++
T Consensus 140 ~~y~~LGlsv~~~~~~~~~~~r~~~--Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 140 PFYEFLGLSVGIITSDMSSEERREA--YAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHHHTT--EEEEETTTEHHHHHHH--HHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHHHhhhccccCccccCHHHHHHH--HhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 8 46789999999998775432222 23799999998874 4443321 124678999999999765
No 319
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.73 E-value=8.9e-08 Score=104.16 Aligned_cols=145 Identities=17% Similarity=0.160 Sum_probs=82.1
Q ss_pred CCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhcc-CCCCEEEEEeCCccchH
Q psy7557 113 GHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEP 191 (936)
Q Consensus 113 g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~ 191 (936)
.+..+++-.+|+|||...+..+ ..+..... ......+||++|. .+..|+..++.++. ...+++....|+.....
T Consensus 25 ~~g~lL~de~GlGKT~~~i~~~-~~l~~~~~---~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~ 99 (299)
T PF00176_consen 25 PRGGLLADEMGLGKTITAIALI-SYLKNEFP---QRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRR 99 (299)
T ss_dssp T-EEEE---TTSSHHHHHHHHH-HHHHHCCT---TSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHH
T ss_pred CCCEEEEECCCCCchhhhhhhh-hhhhhccc---cccccceeEeecc-chhhhhhhhhcccccccccccccccccccccc
Confidence 3678899999999999866533 33322110 0112259999999 88899999999976 33667766666551222
Q ss_pred HHHHhhcCCcEEEeCCchhHHHHHc---CCcCCCCceEEEEccchhhhcCCCHHHHHHHHhhcCCCCcEEEEEeccc
Q psy7557 192 QLEKIREGCHILIATPGRLNDFVSR---ASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWN 265 (936)
Q Consensus 192 ~~~~~~~~~~Iiv~Tp~~l~~~l~~---~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~ 265 (936)
.........+++|+|.+.+...... ..+.--+.+++|+||+|.+-+.. ......+. .+. ....+++|||+-
T Consensus 100 ~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~-s~~~~~l~-~l~-~~~~~lLSgTP~ 173 (299)
T PF00176_consen 100 LSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKD-SKRYKALR-KLR-ARYRWLLSGTPI 173 (299)
T ss_dssp TTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTT-SHHHHHHH-CCC-ECEEEEE-SS-S
T ss_pred ccccccccceeeeccccccccccccccccccccccceeEEEeccccccccc-cccccccc-ccc-cceEEeeccccc
Confidence 2222334579999999888711000 01112348999999999984333 12222232 344 566788999964
No 320
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.72 E-value=7e-07 Score=109.71 Aligned_cols=286 Identities=15% Similarity=0.141 Sum_probs=155.6
Q ss_pred CcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhccCCCCEEEEEeCCccchHHH
Q psy7557 114 HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQL 193 (936)
Q Consensus 114 ~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 193 (936)
+.-++.=-||||||++....+-. +... ...|.++||+-++.|-.|+.+.++.+........ ......++
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~-l~~~------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~L 342 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARL-LLEL------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSEL 342 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHH-HHhc------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHH
Confidence 45888899999999975543322 2211 4678999999999999999999999753322222 22223333
Q ss_pred H-HhhcC-CcEEEeCCchhHHHHHcC-C-cCCCCceEEEEccchhhhcCCCHHHHHHHHhhcCCCCcEEEEEeccchHHH
Q psy7557 194 E-KIREG-CHILIATPGRLNDFVSRA-S-IDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQ 269 (936)
Q Consensus 194 ~-~~~~~-~~Iiv~Tp~~l~~~l~~~-~-~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~ 269 (936)
. .+..+ ..|+|||-+++...+... . ..-.+=-++|+|||||--. +..-..+...+ ++...++||.|+-..-.
T Consensus 343 k~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~---G~~~~~~~~~~-~~a~~~gFTGTPi~~~d 418 (962)
T COG0610 343 KELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQY---GELAKLLKKAL-KKAIFIGFTGTPIFKED 418 (962)
T ss_pred HHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccc---cHHHHHHHHHh-ccceEEEeeCCcccccc
Confidence 3 33333 489999999998877654 1 1122334788999998542 22222222223 34789999999742211
Q ss_pred HH-HHHhcCCCEEEEeCCCCcccCCceEEEEEEe------Cc--------------------hhhH--------------
Q psy7557 270 RV-AKKYMVNPVKVNVGSLDLAATHTVTQKIIIL------DE--------------------DEKK-------------- 308 (936)
Q Consensus 270 ~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~------~~--------------------~~k~-------------- 308 (936)
.- ....+.+.+..............+...+... .. ..+.
T Consensus 419 ~~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 498 (962)
T COG0610 419 KDTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLA 498 (962)
T ss_pred ccchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcch
Confidence 11 1222222222211111100000000000000 00 0000
Q ss_pred -------HHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCce-----------------------eeecCCCCH
Q psy7557 309 -------DWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKS-----------------------CSLYGDLSQ 358 (936)
Q Consensus 309 -------~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~-----------------------~~~h~~~~~ 358 (936)
..+++..........++++.+.++..+..+++......... ...|... .
T Consensus 499 ~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~ 577 (962)
T COG0610 499 VRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKL-K 577 (962)
T ss_pred HHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHH-H
Confidence 00111111112345678888888775554444432211000 0001111 1
Q ss_pred HHHHHHHHH--hhcCCcEEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccC
Q psy7557 359 EDREIALED--ITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRA 416 (936)
Q Consensus 359 ~~R~~~~~~--f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~ 416 (936)
..+...... ......++||-+|.+-.|.|.|..+++. .|-|----..+|-+-|+.|.
T Consensus 578 ~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~ 636 (962)
T COG0610 578 DEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRV 636 (962)
T ss_pred HHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccC
Confidence 222333334 3456789999999999999999877655 56666667889999999997
No 321
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.71 E-value=8.4e-07 Score=109.01 Aligned_cols=138 Identities=17% Similarity=0.174 Sum_probs=90.0
Q ss_pred CcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhccCCCCEEEEEECCccchHHH
Q psy7557 634 HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQL 713 (936)
Q Consensus 634 ~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 713 (936)
+..+++=-||||||+.....+-. +... ...|.++||+-+++|-.|+.+.++.+........ ...+.+.-.
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~-l~~~------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~---~~~s~~~Lk 343 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARL-LLEL------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP---KAESTSELK 343 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHH-HHhc------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc---cccCHHHHH
Confidence 56899999999999975543322 2111 4578999999999999999999999853322222 223333344
Q ss_pred HHHhcC-ceEEEeCchHHHHHHHcCC--CCCCCceEEEEcccchhccCCCHHHHHHHhhhcCCCceEEEEEecCC
Q psy7557 714 EKIREG-CHILIATPGRLNDFVSRAS--IDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWN 785 (936)
Q Consensus 714 ~~l~~~-~~IiV~Tp~~l~~~l~~~~--~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~ 785 (936)
..+..+ ..|+|+|-+++........ ..-++=-.||+||||+- +.|.... .+...+ ++...++||+|+-
T Consensus 344 ~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS-Q~G~~~~--~~~~~~-~~a~~~gFTGTPi 414 (962)
T COG0610 344 ELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS-QYGELAK--LLKKAL-KKAIFIGFTGTPI 414 (962)
T ss_pred HHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc-cccHHHH--HHHHHh-ccceEEEeeCCcc
Confidence 445544 3899999999988776541 11222336889999983 3332222 222222 4478999999974
No 322
>KOG2340|consensus
Probab=98.62 E-value=5.1e-07 Score=97.22 Aligned_cols=317 Identities=17% Similarity=0.202 Sum_probs=197.3
Q ss_pred CCCCcHHHHHHHHhhhcCCcEEEEecC-CCCc--chhhHHHHHHHhhccCC-------C-Cc--------------cCCC
Q psy7557 616 FTTPSPIQAQAWPILMSGHDMIGIAQT-GTGK--TFAFLLPALIHTHLQTT-------P-IS--------------ERAG 670 (936)
Q Consensus 616 ~~~p~~iQ~~ai~~~l~g~d~i~~apT-GsGK--Tl~~~lp~l~~~~~~~~-------~-~~--------------~~~~ 670 (936)
-..+|+.|.+.+..+.+-+|++..-.| +.|+ +-.|.+-++.|+..... . .. .-..
T Consensus 214 s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tR 293 (698)
T KOG2340|consen 214 SEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTR 293 (698)
T ss_pred cCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCC
Confidence 356899999999999999998875322 4555 44677778877643211 0 00 0136
Q ss_pred CEEEEEecCHHHHHHHHHHHHhc-cCCCC---------EEEEEECCcc--------chHHHHH-----------------
Q psy7557 671 PSVLVMAPTRELATQIEREVNKI-DYKGL---------KAVCVYGGKE--------LEPQLEK----------------- 715 (936)
Q Consensus 671 ~~~lil~Pt~~La~Q~~~~~~~~-~~~~~---------~~~~~~gg~~--------~~~~~~~----------------- 715 (936)
|+|||+||+|+-|..+.+.+..+ .+.+- +.-.-++|.. .......
T Consensus 294 pkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ft 373 (698)
T KOG2340|consen 294 PKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFT 373 (698)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHH
Confidence 89999999999999888888775 21111 1111122210 0111111
Q ss_pred -----Hh---cCceEEEeCchHHHHHHHcC------CCCCCCceEEEEcccchhccCCCHHHHHHHhhhcC---C-----
Q psy7557 716 -----IR---EGCHILIATPGRLNDFVSRA------SIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYIN---P----- 773 (936)
Q Consensus 716 -----l~---~~~~IiV~Tp~~l~~~l~~~------~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~~---~----- 773 (936)
|- ...||+||+|--|.-++.+. .-.++.+.++|||-||.|+...|.. +..|+..++ .
T Consensus 374 kKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEh-l~~ifdHLn~~P~k~h~~ 452 (698)
T KOG2340|consen 374 KKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEH-LLHIFDHLNLQPSKQHDV 452 (698)
T ss_pred HHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHH-HHHHHHHhhcCcccccCC
Confidence 10 24799999998887777632 2247889999999999988765543 334444432 1
Q ss_pred ----------------CceEEEEEecCChHHHHHHHHhcCCCeE-EEeCCCCc-----ccCCceEE---EEEEc----Cc
Q psy7557 774 ----------------NRQTVMTSATWNKDVQRVAKKYMVNPVK-VNVGSLDL-----AATHTVTQ---KIIIL----DE 824 (936)
Q Consensus 774 ----------------~~q~v~~SAT~~~~~~~~~~~~~~~~~~-i~~~~~~~-----~~~~~~~~---~~~~~----~~ 824 (936)
-+|+++||+--.+....+...+..+..- +....... .....+.| .+.+- ..
T Consensus 453 DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~ 532 (698)
T KOG2340|consen 453 DFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETP 532 (698)
T ss_pred ChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCc
Confidence 1599999998877777777666544211 11111000 00111111 11111 12
Q ss_pred chhHHHHHHHHH-hc-cCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEeccc-
Q psy7557 825 DEKKDWLMEFFD-NM-DEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDV- 901 (936)
Q Consensus 825 ~~k~~~l~~~l~-~~-~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~- 901 (936)
+.++.+....+. .+ .....-+|||+++--.--.+-.+++...+.-..+|.-.+...-.++-+.|-.|...||+-|.=
T Consensus 533 D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~ 612 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERA 612 (698)
T ss_pred hHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhh
Confidence 344444433222 11 111235699999998888888999887766666665555566666778899999999999964
Q ss_pred -CccCCCCCCCCEEEEccCCCChh---hhHhhhhhc
Q psy7557 902 -ASRGLDVPDLTHVINYDFPSHIE---EYVHRVGRT 933 (936)
Q Consensus 902 -~~~Gidip~v~~VI~~d~p~s~~---~yiqr~GRa 933 (936)
.=|--++.+|..||.|.+|..+. +++.++||+
T Consensus 613 hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~ 648 (698)
T KOG2340|consen 613 HFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKT 648 (698)
T ss_pred hhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhh
Confidence 44668999999999999998764 457788776
No 323
>KOG1002|consensus
Probab=98.61 E-value=3.2e-06 Score=90.23 Aligned_cols=90 Identities=18% Similarity=0.259 Sum_probs=73.0
Q ss_pred CcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCC-CcE-EEecccCccCCCCCCCCEEEEccCC
Q psy7557 843 DKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGY-ARI-CVATDVASRGLDVPDLTHVINYDFP 920 (936)
Q Consensus 843 ~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~-~~v-LVaT~~~~~Gidip~v~~VI~~d~p 920 (936)
-+.|||..--...+.+...|.+.|+.+.-+-|+|++..|..+++.|++.- ++| ||+-.+.+..+|+-..++|+..|+-
T Consensus 639 ~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPW 718 (791)
T KOG1002|consen 639 AKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPW 718 (791)
T ss_pred hhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeeccc
Confidence 46788888777788888888889999999999999999999999999864 444 5555777777899999999999987
Q ss_pred CChh------hhHhhhhh
Q psy7557 921 SHIE------EYVHRVGR 932 (936)
Q Consensus 921 ~s~~------~yiqr~GR 932 (936)
.+.. +-|||||-
T Consensus 719 WNpaVe~Qa~DRiHRIGQ 736 (791)
T KOG1002|consen 719 WNPAVEWQAQDRIHRIGQ 736 (791)
T ss_pred ccHHHHhhhhhhHHhhcC
Confidence 6644 45667663
No 324
>KOG4439|consensus
Probab=98.59 E-value=7.3e-07 Score=99.13 Aligned_cols=77 Identities=17% Similarity=0.219 Sum_probs=59.7
Q ss_pred HHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhh--cCCCcEE-EecccCccCCCCCCCCEEEEccCCCChhhhHhhhhh
Q psy7557 856 SAMSSDLACQYRKSCSLYGDLSQEDREIALEDIT--SGYARIC-VATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGR 932 (936)
Q Consensus 856 ~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~--~g~~~vL-VaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GR 932 (936)
.-+...|...|.....+||....++|..+++.|. +|..+|+ ++=.+-+.|+|+-+.+|+|..|+-.++.-=-|-.-|
T Consensus 760 niv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDR 839 (901)
T KOG4439|consen 760 NIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDR 839 (901)
T ss_pred HHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHH
Confidence 4445666777888889999999999999999996 4545655 444778899999999999999999887654443333
No 325
>KOG1002|consensus
Probab=98.58 E-value=5.1e-06 Score=88.69 Aligned_cols=126 Identities=15% Similarity=0.149 Sum_probs=93.6
Q ss_pred hhHHHHHHHHHhcc--CCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcC-CcEE-EEEecc
Q psy7557 306 EKKDWLMEFFDNMD--EERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSG-YARI-CVATDV 381 (936)
Q Consensus 306 ~k~~~l~~~l~~~~--~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g-~~~v-LvaT~~ 381 (936)
.|.+.|.+.+..+. ...-+.|||..--...+-+...|...|+.+.-+-|+|++..|..+++.|++. .++| ||+--+
T Consensus 620 TKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkA 699 (791)
T KOG1002|consen 620 TKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKA 699 (791)
T ss_pred hHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEecc
Confidence 34444544443332 2234778998887788888888999999999999999999999999999975 3454 456677
Q ss_pred cccCCCCCCCcEEEEecCCCCccccccCCCCcccCCC--ceeEEEEecccCh
Q psy7557 382 ASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGK--SGESITLMTRKDW 431 (936)
Q Consensus 382 ~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~--~g~~~~~~~~~~~ 431 (936)
.+..+|+-..++|+..|+=+++.-=+|---|.-|-|+ +-..+.|+-++..
T Consensus 700 GGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsi 751 (791)
T KOG1002|consen 700 GGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSI 751 (791)
T ss_pred CceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccH
Confidence 7777999999999999998887766655555555543 4677778776643
No 326
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.48 E-value=1.2e-06 Score=90.46 Aligned_cols=130 Identities=23% Similarity=0.339 Sum_probs=94.2
Q ss_pred hCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHh
Q psy7557 613 NLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK 692 (936)
Q Consensus 613 ~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 692 (936)
..|+ .|++.|..+.-.+..|+ |+...||=|||++..+|+....+ .|..|=|++.+.-||..=++.+..
T Consensus 73 ~~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL---------~G~~V~vvT~NdyLA~RD~~~~~~ 140 (266)
T PF07517_consen 73 TLGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNAL---------QGKGVHVVTSNDYLAKRDAEEMRP 140 (266)
T ss_dssp HTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHT---------TSS-EEEEESSHHHHHHHHHHHHH
T ss_pred HcCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHH---------hcCCcEEEeccHHHhhccHHHHHH
Confidence 4677 89999999998887776 99999999999999988876664 367889999999999877777776
Q ss_pred c-cCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHH-HHHcCC------CCCCCceEEEEcccchhc
Q psy7557 693 I-DYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLND-FVSRAS------IDLKAVSFVVLDEADRML 756 (936)
Q Consensus 693 ~-~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~-~l~~~~------~~~~~i~~lViDEah~l~ 756 (936)
+ ...|+.+..++++.+........ .++|+.+|...+.. .++... ...+.+.++||||+|.++
T Consensus 141 ~y~~LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 141 FYEFLGLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHHTT--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHHhhhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 4 57799999999987754432222 36899999998753 443321 124678999999999875
No 327
>KOG0921|consensus
Probab=98.46 E-value=7.8e-07 Score=101.16 Aligned_cols=307 Identities=21% Similarity=0.212 Sum_probs=175.5
Q ss_pred hcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhccCCCCEEEEEeCCccch
Q psy7557 111 MSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIE 190 (936)
Q Consensus 111 ~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~ 190 (936)
...+-+++.+.||.|||.-+.--+|..+..+. ......+.+--|+|--|.-+.+.+.+-.. -.+....|- +..
T Consensus 391 ~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns----~g~~~na~v~qprrisaisiaerva~er~--e~~g~tvgy-~vR 463 (1282)
T KOG0921|consen 391 AENRVVIIKGETGCGKSTQVAQFLLESFLENS----NGASFNAVVSQPRRISAISLAERVANERG--EEVGETCGY-NVR 463 (1282)
T ss_pred hcCceeeEeecccccchhHHHHHHHHHHhhcc----ccccccceeccccccchHHHHHHHHHhhH--Hhhcccccc-ccc
Confidence 33445667799999999987777777665432 23445678889999888888877755211 011111111 111
Q ss_pred HHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhh-cCCCHHHHHHHHhhcCCCCcEEEEEeccchH--
Q psy7557 191 PQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRML-DLGFEPQINKTSIYINPNRQTVMTSATWNKD-- 267 (936)
Q Consensus 191 ~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~-~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~-- 267 (936)
-...-.+.---|+.+|-|-+..++..+ +..+.++|+||.|..- +..|...+.+=+....++..++++|||+..+
T Consensus 464 f~Sa~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatIdTd~f 540 (1282)
T KOG0921|consen 464 FDSATPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATIDTDLF 540 (1282)
T ss_pred ccccccccccceeeeccchhhhhhhhc---ccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhcccchhhh
Confidence 000000111368899999998888765 4467799999999532 2223333322222222334444444444322
Q ss_pred ------------------HHHHHHHhcCCCEEEEeCCCCc-----------ccCCc-----------------eEEEEEE
Q psy7557 268 ------------------VQRVAKKYMVNPVKVNVGSLDL-----------AATHT-----------------VTQKIII 301 (936)
Q Consensus 268 ------------------~~~~~~~~~~~~~~i~~~~~~~-----------~~~~~-----------------~~~~~~~ 301 (936)
+..+.......+... +..... ..... .......
T Consensus 541 ~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~-vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~ 619 (1282)
T KOG0921|consen 541 TNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQF-VPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSR 619 (1282)
T ss_pred hhhhccccceeeccccccHHHHHHHHhhhhhhc-cCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhc
Confidence 111211111111100 000000 00000 0000000
Q ss_pred eCchhhHHHHHHHHHhc---cCCCCcEEEEeCchHHHHHHHHHhhhc-------CCceeeecCCCCHHHHHHHHHHhhcC
Q psy7557 302 LDEDEKKDWLMEFFDNM---DEERDKVMVFMGRKASVSAMSSDLACQ-------YRKSCSLYGDLSQEDREIALEDITSG 371 (936)
Q Consensus 302 ~~~~~k~~~l~~~l~~~---~~~~~~~iVF~~~~~~~~~l~~~L~~~-------~~~~~~~h~~~~~~~R~~~~~~f~~g 371 (936)
..+....-.|.+.+... ..-.+-++||..--.....|...|... .+.+...|+.+...+..++.+.-..|
T Consensus 620 ~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~g 699 (1282)
T KOG0921|consen 620 LSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEG 699 (1282)
T ss_pred chhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCccccc
Confidence 00011111112211111 133567899999888888888777643 35677899999999999999999999
Q ss_pred CcEEEEEecccccCCCCCCCcEEEEecCC------------------CCccccccCCCCcccCCCceeEEEEeccc
Q psy7557 372 YARICVATDVASRGLDVPDLTHVINYDFP------------------SHIEEYVHRVGRTGRAGKSGESITLMTRK 429 (936)
Q Consensus 372 ~~~vLvaT~~~~~GiDip~v~~VI~~d~p------------------~s~~~y~qr~GRagR~g~~g~~~~~~~~~ 429 (936)
..++++.|.+++.-+-+-++..||..+.- .+.-..+||.||+||. ++|.|..+++..
T Consensus 700 v~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~a 774 (1282)
T KOG0921|consen 700 VTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSRA 774 (1282)
T ss_pred ccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHHH
Confidence 99999999999999999888888854432 1455678999999998 688888887643
No 328
>KOG4439|consensus
Probab=98.45 E-value=1.9e-06 Score=95.96 Aligned_cols=120 Identities=16% Similarity=0.247 Sum_probs=93.7
Q ss_pred chhhHHHHHHHHHhc-cCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhh--cCCcEEE-EEe
Q psy7557 304 EDEKKDWLMEFFDNM-DEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDIT--SGYARIC-VAT 379 (936)
Q Consensus 304 ~~~k~~~l~~~l~~~-~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~--~g~~~vL-vaT 379 (936)
..-|...+++.+... .....+++|...--....-+...|...|.....+||.....+|..+++.|. +|..+|+ ++=
T Consensus 727 ~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSL 806 (901)
T KOG4439|consen 727 PSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSL 806 (901)
T ss_pred chhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEE
Confidence 344555555555544 345667777665555566677888899999999999999999999999995 4555665 455
Q ss_pred cccccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCceeEE
Q psy7557 380 DVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESI 423 (936)
Q Consensus 380 ~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~ 423 (936)
.+-+.|+|+-+.+|+|..|+-+++.-=.|-.-|.-|.|+.-..+
T Consensus 807 tAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~ 850 (901)
T KOG4439|consen 807 TAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVF 850 (901)
T ss_pred ccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceE
Confidence 78899999999999999999999998888889999998775544
No 329
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.44 E-value=3.5e-06 Score=100.63 Aligned_cols=67 Identities=16% Similarity=-0.002 Sum_probs=53.8
Q ss_pred CCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHHHhhcCCCCcEEEEEeccc
Q psy7557 199 GCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWN 265 (936)
Q Consensus 199 ~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~ 265 (936)
...|+++||..+..-+..+.++++++..+||||||++.+..-..-+.++.....+..-+.+|||.+.
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 3679999999998888888999999999999999999876666666666665556666777777654
No 330
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.43 E-value=6.8e-06 Score=95.84 Aligned_cols=306 Identities=20% Similarity=0.227 Sum_probs=176.5
Q ss_pred CCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc
Q psy7557 614 LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693 (936)
Q Consensus 614 ~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 693 (936)
+|. .|..+|.- -.+.-...-++-..||=|||+++.+|+....+ .|..+.++...--||.--..++..+
T Consensus 77 lg~-~~~dVQli--G~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL---------~gkgVhvVTvNdYLA~RDae~m~~l 144 (822)
T COG0653 77 LGM-RHFDVQLL--GGIVLHLGDIAEMRTGEGKTLVATLPAYLNAL---------AGKGVHVVTVNDYLARRDAEWMGPL 144 (822)
T ss_pred cCC-ChhhHHHh--hhhhhcCCceeeeecCCchHHHHHHHHHHHhc---------CCCCcEEeeehHHhhhhCHHHHHHH
Confidence 355 55566654 44444456788999999999999999875543 3566788888888887666666554
Q ss_pred -cCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHH-HHHHcC------CCCCCCceEEEEcccchhc-c-------
Q psy7557 694 -DYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLN-DFVSRA------SIDLKAVSFVVLDEADRML-D------- 757 (936)
Q Consensus 694 -~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~-~~l~~~------~~~~~~i~~lViDEah~l~-~------- 757 (936)
...|+.+.+...+.+........ .|||..+|-..+- +.++-+ ........+-|+||+|-++ +
T Consensus 145 ~~~LGlsvG~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLi 222 (822)
T COG0653 145 YEFLGLSVGVILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLI 222 (822)
T ss_pred HHHcCCceeeccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeecccccee
Confidence 56789999988888665554433 4899999987652 222111 1124457889999999654 1
Q ss_pred -CC-------CHHHHHHHhhhcCC--------CceEEEEEec-C--------------ChHHH------H-H-HHH-hcC
Q psy7557 758 -LG-------FEPQINKTSIYINP--------NRQTVMTSAT-W--------------NKDVQ------R-V-AKK-YMV 797 (936)
Q Consensus 758 -~~-------~~~~~~~i~~~~~~--------~~q~v~~SAT-~--------------~~~~~------~-~-~~~-~~~ 797 (936)
.| .+..+..+...+.. ..+.+.++-. + +.++. . + +.. +..
T Consensus 223 ISG~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~ 302 (822)
T COG0653 223 ISGPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFR 302 (822)
T ss_pred eecccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhc
Confidence 11 12233333322211 1122222211 0 00000 0 0 000 001
Q ss_pred CCe--------EEE------------------------------------------------------------------
Q psy7557 798 NPV--------KVN------------------------------------------------------------------ 803 (936)
Q Consensus 798 ~~~--------~i~------------------------------------------------------------------ 803 (936)
+-- .+.
T Consensus 303 D~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~ 382 (822)
T COG0653 303 DVDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFD 382 (822)
T ss_pred CCeeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhh
Confidence 100 000
Q ss_pred --------eCCCCcccCCceEEEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCC
Q psy7557 804 --------VGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGD 875 (936)
Q Consensus 804 --------~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~ 875 (936)
+-+...+....-....++.....|...+++.+......+.|+||-+.+....+.++..|.+.+++...+.+.
T Consensus 383 ~iY~l~vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk 462 (822)
T COG0653 383 VIYGLDVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAK 462 (822)
T ss_pred hccCCceeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccc
Confidence 000000000000111234445677788888777777889999999999999999999999999887777665
Q ss_pred CCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCC-----------EEEEccCCCChhhhHhhhhhccC
Q psy7557 876 LSQEDREIALEDITSGYARICVATDVASRGLDVPDLT-----------HVINYDFPSHIEEYVHRVGRTGE 935 (936)
Q Consensus 876 l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~-----------~VI~~d~p~s~~~yiqr~GRaGR 935 (936)
-. .|+.-+-.+.-..-.|-|||+.++||-||.--. +||-..--.|-.-=-|--||+||
T Consensus 463 ~h--~~EA~Iia~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGR 531 (822)
T COG0653 463 NH--AREAEIIAQAGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGR 531 (822)
T ss_pred cH--HHHHHHHhhcCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhccccc
Confidence 44 333333333323346889999999999986333 23433323232222377888888
No 331
>KOG0388|consensus
Probab=98.31 E-value=9.4e-06 Score=90.26 Aligned_cols=111 Identities=16% Similarity=0.185 Sum_probs=95.8
Q ss_pred chhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCC-cEEEecccCc
Q psy7557 825 DEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYA-RICVATDVAS 903 (936)
Q Consensus 825 ~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~-~vLVaT~~~~ 903 (936)
..|...|-.++..+...+.++|+|..-.+..+.+..+|...++.-.-+.|.....+|..+..+|....+ -.|++|.+.+
T Consensus 1027 SgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGG 1106 (1185)
T KOG0388|consen 1027 SGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGG 1106 (1185)
T ss_pred ccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCc
Confidence 455666777888888889999999999999999999999999999999999999999999999987544 5789999999
Q ss_pred cCCCCCCCCEEEEccCCCChhhhHhhhhhccC
Q psy7557 904 RGLDVPDLTHVINYDFPSHIEEYVHRVGRTGE 935 (936)
Q Consensus 904 ~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR 935 (936)
-|||+-+.+.||.||.-.++.-=.|-+.||-|
T Consensus 1107 LGINLTAADTViFYdSDWNPT~D~QAMDRAHR 1138 (1185)
T KOG0388|consen 1107 LGINLTAADTVIFYDSDWNPTADQQAMDRAHR 1138 (1185)
T ss_pred ccccccccceEEEecCCCCcchhhHHHHHHHh
Confidence 99999999999999988777666666666655
No 332
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.22 E-value=2e-05 Score=99.37 Aligned_cols=110 Identities=18% Similarity=0.191 Sum_probs=95.2
Q ss_pred hhHHHHHHHH-HhccCCCC--cEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcC--CCcEEEecc
Q psy7557 826 EKKDWLMEFF-DNMDEERD--KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSG--YARICVATD 900 (936)
Q Consensus 826 ~k~~~l~~~l-~~~~~~~~--~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g--~~~vLVaT~ 900 (936)
.|...+.+++ ........ +++||++-......+...|...++....++|.++.++|...++.|.++ ..-++++|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 5666777777 45545566 899999999999999999999988899999999999999999999986 455777778
Q ss_pred cCccCCCCCCCCEEEEccCCCChhhhHhhhhhccC
Q psy7557 901 VASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGE 935 (936)
Q Consensus 901 ~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR 935 (936)
+.+.|+|+-..++||+||...+.....|...|+-|
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~R 806 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHR 806 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHH
Confidence 99999999999999999999999888887777765
No 333
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.22 E-value=7.8e-06 Score=97.68 Aligned_cols=68 Identities=16% Similarity=-0.016 Sum_probs=58.9
Q ss_pred cCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHHHhhhcCCCceEEEEEecCC
Q psy7557 718 EGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWN 785 (936)
Q Consensus 718 ~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~ 785 (936)
....|+++||..+..-+-.+.+.+..+..+||||||++.+..-...+.++....++..-+.+|||.+.
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred hcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 34689999999998777788899999999999999999888777888888888788888999999853
No 334
>KOG0921|consensus
Probab=98.19 E-value=1.3e-05 Score=91.48 Aligned_cols=297 Identities=20% Similarity=0.219 Sum_probs=165.6
Q ss_pred HhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhccCCCCEEEEEECCc
Q psy7557 628 PILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGK 707 (936)
Q Consensus 628 ~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~ 707 (936)
..+...+-+++.+.||+|||.-+.--+|+.+..+.. ..-..+.+--|+|--+.-+.+.+.+-. +-.++..+|-
T Consensus 388 q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~----g~~~na~v~qprrisaisiaerva~er--~e~~g~tvgy- 460 (1282)
T KOG0921|consen 388 QAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSN----GASFNAVVSQPRRISAISLAERVANER--GEEVGETCGY- 460 (1282)
T ss_pred HHHhcCceeeEeecccccchhHHHHHHHHHHhhccc----cccccceeccccccchHHHHHHHHHhh--HHhhcccccc-
Confidence 334445567777999999999877777777655432 334457788899888888877776531 1111111111
Q ss_pred cchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhcc-CCCHHHHHHHhhhcCCCceEEEEEecCCh
Q psy7557 708 ELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLD-LGFEPQINKTSIYINPNRQTVMTSATWNK 786 (936)
Q Consensus 708 ~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~-~~~~~~~~~i~~~~~~~~q~v~~SAT~~~ 786 (936)
.......--...-.|+.+|-|-+.+.+.+. +..+.++|+||.|..-- ..|...+.+-+.-..+...++++|||+..
T Consensus 461 ~vRf~Sa~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatIdT 537 (1282)
T KOG0921|consen 461 NVRFDSATPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATIDT 537 (1282)
T ss_pred cccccccccccccceeeeccchhhhhhhhc---ccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhcccch
Confidence 111010001112368999999998888765 45677899999995321 12332222222222234444555555422
Q ss_pred H--------------------HHHHHHHhcCCCeEEEeCCCCcc-------------cCCceEEEEEEcC----------
Q psy7557 787 D--------------------VQRVAKKYMVNPVKVNVGSLDLA-------------ATHTVTQKIIILD---------- 823 (936)
Q Consensus 787 ~--------------------~~~~~~~~~~~~~~i~~~~~~~~-------------~~~~~~~~~~~~~---------- 823 (936)
+ +..+.......+... +...... ....-+..-..++
T Consensus 538 d~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~-vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~a 616 (1282)
T KOG0921|consen 538 DLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQF-VPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTA 616 (1282)
T ss_pred hhhhhhhccccceeeccccccHHHHHHHHhhhhhhc-cCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhh
Confidence 1 111111111111100 0000000 0000000000000
Q ss_pred -----cchhHHHHHH-HHHhc--cCCCCcEEEEcCChHHHHHHHHHHHhc-------CCceEEEeCCCCHHHHHHHHHHh
Q psy7557 824 -----EDEKKDWLME-FFDNM--DEERDKVMVFMGRKASVSAMSSDLACQ-------YRKSCSLYGDLSQEDREIALEDI 888 (936)
Q Consensus 824 -----~~~k~~~l~~-~l~~~--~~~~~~~iIF~~s~~~~~~l~~~L~~~-------~~~~~~~h~~l~~~~R~~~~~~F 888 (936)
+.....-|.+ ++... ..-.+-++||.+--.....|...|... .+.+...|+.+...+..++.+.-
T Consensus 617 m~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~ 696 (1282)
T KOG0921|consen 617 MSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPV 696 (1282)
T ss_pred hhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcc
Confidence 0001111111 11111 123466889988888777777776532 34667789999999999999999
Q ss_pred hcCCCcEEEecccCccCCCCCCCCEEEEccCC------------------CChhhhHhhhhhccC
Q psy7557 889 TSGYARICVATDVASRGLDVPDLTHVINYDFP------------------SHIEEYVHRVGRTGE 935 (936)
Q Consensus 889 ~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~p------------------~s~~~yiqr~GRaGR 935 (936)
..|..++++.|.+++.-+.+-++..||..+.- .|....+||.||+||
T Consensus 697 p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~gr 761 (1282)
T KOG0921|consen 697 PEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGR 761 (1282)
T ss_pred cccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCce
Confidence 99999999999999999998887777753321 355667899999997
No 335
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.17 E-value=1.9e-05 Score=94.40 Aligned_cols=142 Identities=18% Similarity=0.242 Sum_probs=84.7
Q ss_pred CcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHh----------ccCCCCEEEEE
Q psy7557 634 HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK----------IDYKGLKAVCV 703 (936)
Q Consensus 634 ~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~----------~~~~~~~~~~~ 703 (936)
.++.+.++||+|||.+|+-.++..... ..-.+.||+||+.+.-..+.+.++. +....+....+
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~-------~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~ 132 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQK-------YGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVI 132 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHH-------cCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEE
Confidence 478999999999999998877655432 2346899999999987776655541 11222333334
Q ss_pred ECCc-------cchHHHHHHhc-------CceEEEeCchHHHHHHH-c---------CC-CC---CCCc-eEEEEcccch
Q psy7557 704 YGGK-------ELEPQLEKIRE-------GCHILIATPGRLNDFVS-R---------AS-ID---LKAV-SFVVLDEADR 754 (936)
Q Consensus 704 ~gg~-------~~~~~~~~l~~-------~~~IiV~Tp~~l~~~l~-~---------~~-~~---~~~i-~~lViDEah~ 754 (936)
.++. ........... ..+|+|+|.+.+..-.. + +. .. +... -+||+||.|+
T Consensus 133 ~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~ 212 (986)
T PRK15483 133 NAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHR 212 (986)
T ss_pred ecCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCC
Confidence 3332 11222222221 36899999988865211 0 00 11 1111 2689999999
Q ss_pred hccCCCHHHHHHHhhhcCCCceEEEEEecCCh
Q psy7557 755 MLDLGFEPQINKTSIYINPNRQTVMTSATWNK 786 (936)
Q Consensus 755 l~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~ 786 (936)
+-.. ......| ..++|.. ++.+|||.+.
T Consensus 213 ~~~~--~k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 213 FPRD--NKFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred CCcc--hHHHHHH-HhcCccc-EEEEeeecCC
Confidence 8542 2233444 4444444 4669999976
No 336
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.13 E-value=1.1e-05 Score=84.11 Aligned_cols=74 Identities=20% Similarity=0.245 Sum_probs=50.1
Q ss_pred CCcHHHHHHHHhhhcCCc-EEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHh
Q psy7557 618 TPSPIQAQAWPILMSGHD-MIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK 692 (936)
Q Consensus 618 ~p~~iQ~~ai~~~l~g~d-~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 692 (936)
++++-|.+|+..+++... .++.||.|+|||.+.. .++..+...........+.++|+++|+..-+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHH-HHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHH-HHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 368899999999999888 9999999999995422 2333321100001125678999999999999999988887
No 337
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.12 E-value=2.5e-05 Score=93.43 Aligned_cols=73 Identities=16% Similarity=0.205 Sum_probs=57.2
Q ss_pred CcEEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccC-----CCc--ee---EEEEecccChhhHHhHHHHH
Q psy7557 372 YARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRA-----GKS--GE---SITLMTRKDWSHAHEIIPIL 441 (936)
Q Consensus 372 ~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~-----g~~--g~---~~~~~~~~~~~~~~~l~~~l 441 (936)
..+.+++-++|.+|-|-|++-++...+-..|...-.|.+||.-|. |.. +. -.++++.+...++..|.+-+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 678999999999999999999999999888888899999999996 221 22 22334556677788887766
Q ss_pred hhc
Q psy7557 442 EEG 444 (936)
Q Consensus 442 ~~~ 444 (936)
++.
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 554
No 338
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.11 E-value=9.6e-06 Score=84.62 Aligned_cols=74 Identities=20% Similarity=0.245 Sum_probs=50.3
Q ss_pred CCcHHHHHHHHHHhcCCc-EEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHh
Q psy7557 98 TPSPIQAQAWPILMSGHD-MIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK 172 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~~g~d-~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 172 (936)
++++.|.+|+..+++... .++.||.|||||.+.. .++..+...........+.++|+++|+..-+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHH-HHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHH-HHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 368999999999999888 8999999999996422 2333331100001125677899999999999999998887
No 339
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.94 E-value=8.9e-05 Score=73.64 Aligned_cols=143 Identities=18% Similarity=0.194 Sum_probs=71.8
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHH-------HHHH
Q psy7557 98 TPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQI-------EREV 170 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~-------~~~~ 170 (936)
-.|+.|..++.+++...-+++.||.|||||+.++-.++..+.. +.-.+++|+-|+.+....+ .+.+
T Consensus 4 p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~-------g~~~kiii~Rp~v~~~~~lGflpG~~~eK~ 76 (205)
T PF02562_consen 4 PKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE-------GEYDKIIITRPPVEAGEDLGFLPGDLEEKM 76 (205)
T ss_dssp --SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT-------TS-SEEEEEE-S--TT----SS--------
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh-------CCCcEEEEEecCCCCccccccCCCCHHHHH
Confidence 3588999999999977778888999999999988888877653 3445789988887542211 1111
Q ss_pred HhccCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHHHhh
Q psy7557 171 NKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIY 250 (936)
Q Consensus 171 ~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~ 250 (936)
.-+. ..+.-.....-.......+.....|-+..+.-+ . ...+++ .+||+|||..+. ..++..++..
T Consensus 77 ~p~~---~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~i----R--Grt~~~-~~iIvDEaQN~t----~~~~k~ilTR 142 (205)
T PF02562_consen 77 EPYL---RPIYDALEELFGKEKLEELIQNGKIEIEPLAFI----R--GRTFDN-AFIIVDEAQNLT----PEELKMILTR 142 (205)
T ss_dssp -TTT---HHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGG----T--T--B-S-EEEEE-SGGG------HHHHHHHHTT
T ss_pred HHHH---HHHHHHHHHHhChHhHHHHhhcCeEEEEehhhh----c--Cccccc-eEEEEecccCCC----HHHHHHHHcc
Confidence 1100 000000000000111122222344555543322 1 112332 899999999874 5677778877
Q ss_pred cCCCCcEEEEE
Q psy7557 251 INPNRQTVMTS 261 (936)
Q Consensus 251 ~~~~~q~~~~S 261 (936)
+..+.+++++-
T Consensus 143 ~g~~skii~~G 153 (205)
T PF02562_consen 143 IGEGSKIIITG 153 (205)
T ss_dssp B-TT-EEEEEE
T ss_pred cCCCcEEEEec
Confidence 77777776654
No 340
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.88 E-value=3.7e-05 Score=77.16 Aligned_cols=120 Identities=20% Similarity=0.260 Sum_probs=69.7
Q ss_pred CCcHHHHHHHHHHhcCC-c-EEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhccC
Q psy7557 98 TPSPIQAQAWPILMSGH-D-MIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDY 175 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~~g~-d-~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 175 (936)
++++-|.+|+..++.+. . .++.||.|+|||.+ +-.+...+. ..+.++++++||...+..+.+...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~--------~~g~~v~~~apT~~Aa~~L~~~~~---- 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALE--------AAGKRVIGLAPTNKAAKELREKTG---- 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHH--------HTT--EEEEESSHHHHHHHHHHHT----
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHH--------hCCCeEEEECCcHHHHHHHHHhhC----
Confidence 47899999999997544 3 56679999999975 333333332 246789999999998887666632
Q ss_pred CCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcC-------CcCCCCceEEEEccchhhhcCCCHHHHHHHH
Q psy7557 176 KGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRA-------SIDLKAVSFVVLDEADRMLDLGFEPQINKTS 248 (936)
Q Consensus 176 ~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-------~~~~~~~~~lViDEah~l~~~~~~~~~~~i~ 248 (936)
+.+.. +..++... ...+...++||||||-.+. ...+..++
T Consensus 68 --~~a~T---------------------------i~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll 114 (196)
T PF13604_consen 68 --IEAQT---------------------------IHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLL 114 (196)
T ss_dssp --S-EEE---------------------------HHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHH
T ss_pred --cchhh---------------------------HHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHH
Confidence 11111 11111110 0014566799999999763 45566666
Q ss_pred hhcCC-CCcEEEEEec
Q psy7557 249 IYINP-NRQTVMTSAT 263 (936)
Q Consensus 249 ~~~~~-~~q~~~~SAT 263 (936)
...+. +.+++++-=+
T Consensus 115 ~~~~~~~~klilvGD~ 130 (196)
T PF13604_consen 115 RLAKKSGAKLILVGDP 130 (196)
T ss_dssp HHS-T-T-EEEEEE-T
T ss_pred HHHHhcCCEEEEECCc
Confidence 66655 5566665543
No 341
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.87 E-value=0.0005 Score=79.22 Aligned_cols=74 Identities=15% Similarity=0.214 Sum_probs=58.0
Q ss_pred CCcEEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccC--CCceeEE-----------EEecccChhhHHhH
Q psy7557 371 GYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRA--GKSGESI-----------TLMTRKDWSHAHEI 437 (936)
Q Consensus 371 g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~--g~~g~~~-----------~~~~~~~~~~~~~l 437 (936)
...+.+++-.+|-+|-|=|+|=.++-.....|..+=.|.+||+-|- ...|.=+ +++..++...+..|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 3578999999999999999999999999999999999999999995 3334322 35556666777777
Q ss_pred HHHHhhc
Q psy7557 438 IPILEEG 444 (936)
Q Consensus 438 ~~~l~~~ 444 (936)
.+-+...
T Consensus 562 qkEI~~~ 568 (985)
T COG3587 562 QKEINDE 568 (985)
T ss_pred HHHHHHh
Confidence 7655544
No 342
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.87 E-value=0.0001 Score=73.22 Aligned_cols=145 Identities=18% Similarity=0.198 Sum_probs=73.1
Q ss_pred CCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHH-------HHHH
Q psy7557 618 TPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQI-------EREV 690 (936)
Q Consensus 618 ~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~-------~~~~ 690 (936)
-.|+.|..++..++...-+++.+|.|||||+.++..++..+.. +.-.+++|+-|..+....+ .+.+
T Consensus 4 p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~-------g~~~kiii~Rp~v~~~~~lGflpG~~~eK~ 76 (205)
T PF02562_consen 4 PKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE-------GEYDKIIITRPPVEAGEDLGFLPGDLEEKM 76 (205)
T ss_dssp --SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT-------TS-SEEEEEE-S--TT----SS--------
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh-------CCCcEEEEEecCCCCccccccCCCCHHHHH
Confidence 4588999999999988889999999999999988888777643 3456888888876531111 1111
Q ss_pred HhccCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHHHhhh
Q psy7557 691 NKIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIY 770 (936)
Q Consensus 691 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~ 770 (936)
.-+..+ +.-.....-.......+.....|-+..+..+.. . .+++ .+||+|||+.+. ..++..++.+
T Consensus 77 ~p~~~p---~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRG-----r-t~~~-~~iIvDEaQN~t----~~~~k~ilTR 142 (205)
T PF02562_consen 77 EPYLRP---IYDALEELFGKEKLEELIQNGKIEIEPLAFIRG-----R-TFDN-AFIIVDEAQNLT----PEELKMILTR 142 (205)
T ss_dssp -TTTHH---HHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--------B-S-EEEEE-SGGG------HHHHHHHHTT
T ss_pred HHHHHH---HHHHHHHHhChHhHHHHhhcCeEEEEehhhhcC-----c-cccc-eEEEEecccCCC----HHHHHHHHcc
Confidence 110000 000000000111122222334555555443321 1 1332 799999999874 4567778888
Q ss_pred cCCCceEEEEEec
Q psy7557 771 INPNRQTVMTSAT 783 (936)
Q Consensus 771 ~~~~~q~v~~SAT 783 (936)
+..+.+++++--.
T Consensus 143 ~g~~skii~~GD~ 155 (205)
T PF02562_consen 143 IGEGSKIIITGDP 155 (205)
T ss_dssp B-TT-EEEEEE--
T ss_pred cCCCcEEEEecCc
Confidence 8878887776533
No 343
>KOG1015|consensus
Probab=97.81 E-value=0.001 Score=77.02 Aligned_cols=109 Identities=19% Similarity=0.203 Sum_probs=86.0
Q ss_pred HHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHh----------------------cCCceEEEeCCCCHHHHHHHH
Q psy7557 828 KDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLAC----------------------QYRKSCSLYGDLSQEDREIAL 885 (936)
Q Consensus 828 ~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~----------------------~~~~~~~~h~~l~~~~R~~~~ 885 (936)
+-+|++++.....-+.++|||..|....+.+-.+|.. .|....-+.|..+...|...-
T Consensus 1128 miLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~ 1207 (1567)
T KOG1015|consen 1128 MILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWA 1207 (1567)
T ss_pred eehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHH
Confidence 3345666666555678999999999998888888763 123445578999999999999
Q ss_pred HHhhcCC----CcEEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 886 EDITSGY----ARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 886 ~~F~~g~----~~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
+.|.+-. .-.||+|-+.+-|||+-+.+-||.||..+++.-=+|-+=|+-||
T Consensus 1208 ~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRf 1262 (1567)
T KOG1015|consen 1208 EEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRF 1262 (1567)
T ss_pred HHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhh
Confidence 9997632 24899999999999999999999999998887777777666554
No 344
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.80 E-value=0.00046 Score=79.53 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=42.3
Q ss_pred CCCcEEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 891 GYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 891 g~~~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
...+.+++-.++-+|.|-|+|=.++-.....|..+=+|.+||+-|.
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRL 527 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRL 527 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceee
Confidence 3478999999999999999999999999999999999999999883
No 345
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.75 E-value=9.6e-05 Score=74.17 Aligned_cols=120 Identities=19% Similarity=0.252 Sum_probs=69.6
Q ss_pred CCcHHHHHHHHhhhcCC--cEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhccC
Q psy7557 618 TPSPIQAQAWPILMSGH--DMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDY 695 (936)
Q Consensus 618 ~p~~iQ~~ai~~~l~g~--d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 695 (936)
++++-|.+|+..++... -.++.+|.|+|||.+. -.+...+. ..+.++++++||...+..+.+...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~--------~~g~~v~~~apT~~Aa~~L~~~~~---- 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALE--------AAGKRVIGLAPTNKAAKELREKTG---- 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHH--------HTT--EEEEESSHHHHHHHHHHHT----
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHH--------hCCCeEEEECCcHHHHHHHHHhhC----
Confidence 36889999999997543 3667799999999742 22333332 246899999999998877666531
Q ss_pred CCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCC-------CCCCCceEEEEcccchhccCCCHHHHHHHh
Q psy7557 696 KGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRAS-------IDLKAVSFVVLDEADRMLDLGFEPQINKTS 768 (936)
Q Consensus 696 ~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~-------~~~~~i~~lViDEah~l~~~~~~~~~~~i~ 768 (936)
+. ..| +..++.... ..+...++||||||-.+. ...+..+.
T Consensus 68 --~~------------------------a~T---i~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll 114 (196)
T PF13604_consen 68 --IE------------------------AQT---IHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLL 114 (196)
T ss_dssp --S-------------------------EEE---HHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHH
T ss_pred --cc------------------------hhh---HHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHH
Confidence 11 112 111111110 015566799999999764 34556666
Q ss_pred hhcCC-CceEEEEEec
Q psy7557 769 IYINP-NRQTVMTSAT 783 (936)
Q Consensus 769 ~~~~~-~~q~v~~SAT 783 (936)
...+. +.+++++-=+
T Consensus 115 ~~~~~~~~klilvGD~ 130 (196)
T PF13604_consen 115 RLAKKSGAKLILVGDP 130 (196)
T ss_dssp HHS-T-T-EEEEEE-T
T ss_pred HHHHhcCCEEEEECCc
Confidence 66654 6677666544
No 346
>KOG1802|consensus
Probab=97.60 E-value=0.00031 Score=78.33 Aligned_cols=85 Identities=22% Similarity=0.253 Sum_probs=66.9
Q ss_pred HHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHH
Q psy7557 610 QLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIERE 689 (936)
Q Consensus 610 ~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~ 689 (936)
.+...|+.+++.-|..|..++++..=.|+++|.|+|||.+.. .++.++.. ..+..+|+.+|+.--+.|+++.
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa-~IVyhl~~-------~~~~~VLvcApSNiAVDqLaeK 473 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSA-TIVYHLAR-------QHAGPVLVCAPSNIAVDQLAEK 473 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhH-HHHHHHHH-------hcCCceEEEcccchhHHHHHHH
Confidence 455568889999999999999999999999999999998754 34445433 2456799999999999999888
Q ss_pred HHhccCCCCEEEEEEC
Q psy7557 690 VNKIDYKGLKAVCVYG 705 (936)
Q Consensus 690 ~~~~~~~~~~~~~~~g 705 (936)
+.+- |++++.+..
T Consensus 474 Ih~t---gLKVvRl~a 486 (935)
T KOG1802|consen 474 IHKT---GLKVVRLCA 486 (935)
T ss_pred HHhc---CceEeeeeh
Confidence 8774 466665543
No 347
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.59 E-value=0.0005 Score=71.45 Aligned_cols=161 Identities=17% Similarity=0.093 Sum_probs=100.2
Q ss_pred CCcHHHHHHHHhhh----------cCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHH
Q psy7557 618 TPSPIQAQAWPILM----------SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIE 687 (936)
Q Consensus 618 ~p~~iQ~~ai~~~l----------~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~ 687 (936)
.++..|.+++-.+. ...-+++.-.||.||.-...--++..++. ...++|++..+-.|-....
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~--------Gr~r~vwvS~s~dL~~Da~ 108 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR--------GRKRAVWVSVSNDLKYDAE 108 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc--------CCCceEEEECChhhhhHHH
Confidence 46888888875543 13457777799999987544334554432 2457999999999999999
Q ss_pred HHHHhccCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcC---CCCC---------CCceEEEEcccchh
Q psy7557 688 REVNKIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRA---SIDL---------KAVSFVVLDEADRM 755 (936)
Q Consensus 688 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~---~~~~---------~~i~~lViDEah~l 755 (936)
+.++.++...+.+..+..-.... . ..+ .-.|+++|...|....... ...+ +.=.+|||||||.+
T Consensus 109 RDl~DIG~~~i~v~~l~~~~~~~-~-~~~--~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~a 184 (303)
T PF13872_consen 109 RDLRDIGADNIPVHPLNKFKYGD-I-IRL--KEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKA 184 (303)
T ss_pred HHHHHhCCCcccceechhhccCc-C-CCC--CCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhc
Confidence 99998876665554443211000 0 111 2469999988776654321 1111 12248999999987
Q ss_pred ccCCC--------HHHHHHHhhhcCCCceEEEEEecCChHHHHH
Q psy7557 756 LDLGF--------EPQINKTSIYINPNRQTVMTSATWNKDVQRV 791 (936)
Q Consensus 756 ~~~~~--------~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~ 791 (936)
-...- ...+..+...+ |+.+++.+|||-..+.+++
T Consensus 185 kn~~~~~~~~sk~g~avl~LQ~~L-P~ARvvY~SATgasep~Nm 227 (303)
T PF13872_consen 185 KNLSSGSKKPSKTGIAVLELQNRL-PNARVVYASATGASEPRNM 227 (303)
T ss_pred CCCCccCccccHHHHHHHHHHHhC-CCCcEEEecccccCCCcee
Confidence 65432 12333344445 5667999999976554443
No 348
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.59 E-value=8.2e-05 Score=72.60 Aligned_cols=107 Identities=21% Similarity=0.270 Sum_probs=73.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHhhhcCC--ceeeecCCCCHHHHHHHHHHhhcCCcEEEEEec--ccccCCCCCC--CcEE
Q psy7557 321 ERDKVMVFMGRKASVSAMSSDLACQYR--KSCSLYGDLSQEDREIALEDITSGYARICVATD--VASRGLDVPD--LTHV 394 (936)
Q Consensus 321 ~~~~~iVF~~~~~~~~~l~~~L~~~~~--~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~--~~~~GiDip~--v~~V 394 (936)
.++.++||++|....+.+.+.+..... ....+.. ...++..+++.|+.+.-.||+|+. .+++|||+|+ ++.|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~v 85 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAV 85 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhee
Confidence 468999999999999999998876532 1122332 356788999999999999999999 9999999997 7789
Q ss_pred EEecCCC-Ccc-----------------------------ccccCCCCcccCCCceeEEEEeccc
Q psy7557 395 INYDFPS-HIE-----------------------------EYVHRVGRTGRAGKSGESITLMTRK 429 (936)
Q Consensus 395 I~~d~p~-s~~-----------------------------~y~qr~GRagR~g~~g~~~~~~~~~ 429 (936)
|..++|- ++. ...|-+||+-|...+--++++++..
T Consensus 86 ii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R 150 (167)
T PF13307_consen 86 IIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSR 150 (167)
T ss_dssp EEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGG
T ss_pred eecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCc
Confidence 9999884 111 1247789999997665555555543
No 349
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.53 E-value=0.00089 Score=69.62 Aligned_cols=161 Identities=17% Similarity=0.088 Sum_probs=97.5
Q ss_pred CCcHHHHHHHHHHhc----------CCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHH
Q psy7557 98 TPSPIQAQAWPILMS----------GHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIE 167 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~~----------g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~ 167 (936)
.++..|.+++-.+-+ ..-.++--.||.||.-...--++..++. ...++|++..+-.|-....
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~--------Gr~r~vwvS~s~dL~~Da~ 108 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR--------GRKRAVWVSVSNDLKYDAE 108 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc--------CCCceEEEECChhhhhHHH
Confidence 378899988865431 1334555689999987543334444432 2346999999999999999
Q ss_pred HHHHhccCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcC---CcCC---------CCceEEEEccchhh
Q psy7557 168 REVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRA---SIDL---------KAVSFVVLDEADRM 235 (936)
Q Consensus 168 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~---~~~~---------~~~~~lViDEah~l 235 (936)
+.++.++...+.+..+..-.... . ..+ .-.|+++|-..|...-..+ ...+ ..=.+||+||||.+
T Consensus 109 RDl~DIG~~~i~v~~l~~~~~~~-~-~~~--~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~a 184 (303)
T PF13872_consen 109 RDLRDIGADNIPVHPLNKFKYGD-I-IRL--KEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKA 184 (303)
T ss_pred HHHHHhCCCcccceechhhccCc-C-CCC--CCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhc
Confidence 99999876666555543211100 0 111 2458888877765543211 1111 11258999999998
Q ss_pred hcCCC--------HHHHHHHHhhcCCCCcEEEEEeccchHHHHH
Q psy7557 236 LDLGF--------EPQINKTSIYINPNRQTVMTSATWNKDVQRV 271 (936)
Q Consensus 236 ~~~~~--------~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~ 271 (936)
-...- ...+..+-..+ |+.+++.+|||--.+..++
T Consensus 185 kn~~~~~~~~sk~g~avl~LQ~~L-P~ARvvY~SATgasep~Nm 227 (303)
T PF13872_consen 185 KNLSSGSKKPSKTGIAVLELQNRL-PNARVVYASATGASEPRNM 227 (303)
T ss_pred CCCCccCccccHHHHHHHHHHHhC-CCCcEEEecccccCCCcee
Confidence 65432 12333444445 4567999999976555443
No 350
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.52 E-value=0.0021 Score=71.20 Aligned_cols=107 Identities=18% Similarity=0.192 Sum_probs=66.4
Q ss_pred EEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhccCCCCEEEEEeCCccchHHHHH
Q psy7557 116 MIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEK 195 (936)
Q Consensus 116 ~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 195 (936)
++|.|..|||||+.++- ++..+. ....+..++++++...|...+.+.+..-.. .
T Consensus 4 ~~I~G~aGTGKTvla~~-l~~~l~------~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~---------~---------- 57 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALN-LAKELQ------NSEEGKKVLYLCGNHPLRNKLREQLAKKYN---------P---------- 57 (352)
T ss_pred EEEEecCCcCHHHHHHH-HHHHhh------ccccCCceEEEEecchHHHHHHHHHhhhcc---------c----------
Confidence 57789999999997654 232221 013567899999999999988888876210 0
Q ss_pred hhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCC-------CHHHHHHHHhh
Q psy7557 196 IREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLG-------FEPQINKTSIY 250 (936)
Q Consensus 196 ~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~-------~~~~~~~i~~~ 250 (936)
......+..|..+...+..........++||+||||++.+.+ ...++..++..
T Consensus 58 --~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 --KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred --chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 001222333333333222223346789999999999998732 24566666554
No 351
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.51 E-value=0.0027 Score=70.36 Aligned_cols=108 Identities=19% Similarity=0.185 Sum_probs=67.0
Q ss_pred cEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhccCCCCEEEEEECCccchHHHH
Q psy7557 635 DMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLE 714 (936)
Q Consensus 635 d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 714 (936)
-++|.+..|||||+.++--+. .+. ....+..++++++..+|...+.+.+..-... +
T Consensus 3 v~~I~G~aGTGKTvla~~l~~-~l~------~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~---------~-------- 58 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAK-ELQ------NSEEGKKVLYLCGNHPLRNKLREQLAKKYNP---------K-------- 58 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHH-Hhh------ccccCCceEEEEecchHHHHHHHHHhhhccc---------c--------
Confidence 367889999999987553222 220 1145678999999999998888888663100 0
Q ss_pred HHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCC-------CHHHHHHHhhh
Q psy7557 715 KIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLG-------FEPQINKTSIY 770 (936)
Q Consensus 715 ~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~-------~~~~~~~i~~~ 770 (936)
.....+..|..+...+..........++||+||||++...+ ...++..+...
T Consensus 59 ----~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 59 ----LKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred ----hhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 01222334444433322223456788999999999998732 23556666554
No 352
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.49 E-value=0.00063 Score=80.65 Aligned_cols=67 Identities=21% Similarity=0.227 Sum_probs=52.4
Q ss_pred CCCcHHHHHHHHhhhcC-CcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHh
Q psy7557 617 TTPSPIQAQAWPILMSG-HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK 692 (936)
Q Consensus 617 ~~p~~iQ~~ai~~~l~g-~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 692 (936)
..+++.|..|+..++.. ..+++.||+|+|||.+.. .++..+. ..+.++|+++||..-+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~-~ii~~~~--------~~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLV-ELIRQLV--------KRGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHH-HHHHHHH--------HcCCCEEEEcCcHHHHHHHHHHHHh
Confidence 36799999999998876 678899999999996533 2333332 2356899999999999988888876
No 353
>KOG1803|consensus
Probab=97.47 E-value=0.0005 Score=76.61 Aligned_cols=65 Identities=23% Similarity=0.271 Sum_probs=49.9
Q ss_pred CCcHHHHHHHHHHhcCCc-EEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHH
Q psy7557 98 TPSPIQAQAWPILMSGHD-MIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVN 171 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~~g~d-~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~ 171 (936)
.+.+-|.+|+..+.+.++ .++.||.|+|||.+-.. ++..+. ..+.++||.+||.+-+.-+.+++.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvE-iI~qlv--------k~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVE-IISQLV--------KQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHH-HHHHHH--------HcCCeEEEEcCchHHHHHHHHHhc
Confidence 568899999999998876 45669999999987544 333333 346799999999998887777543
No 354
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.47 E-value=0.00071 Score=80.20 Aligned_cols=66 Identities=21% Similarity=0.230 Sum_probs=51.8
Q ss_pred CCcHHHHHHHHHHhcC-CcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHh
Q psy7557 98 TPSPIQAQAWPILMSG-HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK 172 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~~g-~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 172 (936)
.+++.|..|+..++.. ..+++.||+|+|||.+.. .++..+. ..+.++|+++||..-+.++.+.+..
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~-~ii~~~~--------~~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLV-ELIRQLV--------KRGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHH-HHHHHHH--------HcCCCEEEEcCcHHHHHHHHHHHHh
Confidence 5689999999999876 567888999999997533 3333332 2356899999999999998888876
No 355
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.46 E-value=0.00084 Score=67.25 Aligned_cols=133 Identities=22% Similarity=0.274 Sum_probs=84.2
Q ss_pred CCCCCcHHHHHHHHhhhc---CCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHH
Q psy7557 615 SFTTPSPIQAQAWPILMS---GHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVN 691 (936)
Q Consensus 615 g~~~p~~iQ~~ai~~~l~---g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~ 691 (936)
++ -.+|.|.+....+.+ |.|.+.+.-.|.|||.+ ++|++...+. .....+-+++| ++|..|..+.+.
T Consensus 21 ~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LA-------dg~~LvrviVp-k~Ll~q~~~~L~ 90 (229)
T PF12340_consen 21 NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALA-------DGSRLVRVIVP-KALLEQMRQMLR 90 (229)
T ss_pred Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHc-------CCCcEEEEEcC-HHHHHHHHHHHH
Confidence 44 679999999988874 68999999999999987 6788877654 23356777777 679999888886
Q ss_pred hc-cC-CCCEEEEE--ECCccch-HH---HH----HHhcCceEEEeCchHHHHHHHc-------CCC-----------CC
Q psy7557 692 KI-DY-KGLKAVCV--YGGKELE-PQ---LE----KIREGCHILIATPGRLNDFVSR-------ASI-----------DL 741 (936)
Q Consensus 692 ~~-~~-~~~~~~~~--~gg~~~~-~~---~~----~l~~~~~IiV~Tp~~l~~~l~~-------~~~-----------~~ 741 (936)
.- +. .+-++..+ .-..... .. .. .......|+++|||.+.++.-. +.. .+
T Consensus 91 ~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l 170 (229)
T PF12340_consen 91 SRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWL 170 (229)
T ss_pred HHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 63 21 12222222 1111111 11 11 2223457999999987654311 110 13
Q ss_pred CCceEEEEcccchhcc
Q psy7557 742 KAVSFVVLDEADRMLD 757 (936)
Q Consensus 742 ~~i~~lViDEah~l~~ 757 (936)
+....=|+||+|..+.
T Consensus 171 ~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 171 DEHSRDILDESDEILS 186 (229)
T ss_pred HhcCCeEeECchhccC
Confidence 3444568999997765
No 356
>KOG0391|consensus
Probab=97.37 E-value=0.00071 Score=79.79 Aligned_cols=109 Identities=19% Similarity=0.274 Sum_probs=95.5
Q ss_pred chhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCC--CcEEEecccC
Q psy7557 825 DEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGY--ARICVATDVA 902 (936)
Q Consensus 825 ~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~--~~vLVaT~~~ 902 (936)
-.|...|.-+++.+...+.++|||..-.+..+.|-..|..+|+-..-+.|...-++|...+++|..+. ...+++|-.-
T Consensus 1259 cGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSg 1338 (1958)
T KOG0391|consen 1259 CGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSG 1338 (1958)
T ss_pred cchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCC
Confidence 45777777788888788999999999999999999999999999899999999999999999998765 3567889999
Q ss_pred ccCCCCCCCCEEEEccCCCC------hhhhHhhhhhc
Q psy7557 903 SRGLDVPDLTHVINYDFPSH------IEEYVHRVGRT 933 (936)
Q Consensus 903 ~~Gidip~v~~VI~~d~p~s------~~~yiqr~GRa 933 (936)
+.|||+-+.+.||.||--.+ ..+..||||++
T Consensus 1339 gvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqt 1375 (1958)
T KOG0391|consen 1339 GVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT 1375 (1958)
T ss_pred ccccccccCceEEEecCCCCchhhhHHHHHHHhhcCc
Confidence 99999999999999997654 45678999987
No 357
>PF13245 AAA_19: Part of AAA domain
Probab=97.34 E-value=0.00049 Score=56.78 Aligned_cols=60 Identities=27% Similarity=0.383 Sum_probs=39.5
Q ss_pred HHHHHhcCCcE-EEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q psy7557 106 AWPILMSGHDM-IGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREV 170 (936)
Q Consensus 106 ai~~~~~g~d~-l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~ 170 (936)
|+...+++..+ ++.||.|||||...+- .+..+.... . ..+.++++++||+..+.++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~-~i~~l~~~~---~-~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAA-RIAELLAAR---A-DPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHH-HHHHHHHHh---c-CCCCeEEEECCCHHHHHHHHHHH
Confidence 44534444454 5589999999965443 333332110 0 12678999999999999998888
No 358
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.33 E-value=0.0004 Score=71.04 Aligned_cols=87 Identities=24% Similarity=0.433 Sum_probs=71.4
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHhccCCCCEEEEEeCCc-cchHHHHHhhcC-CcEEEeCCchhHHHHHcCCcCCCCce
Q psy7557 148 RAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGK-EIEPQLEKIREG-CHILIATPGRLNDFVSRASIDLKAVS 225 (936)
Q Consensus 148 ~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~-~~~~~~~~~~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~~~ 225 (936)
...|.+|||+..--=|..+.+.++.|...+..++-++.-. ...++...+..+ ++|.||||+|+..++..+.+.++++.
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~ 203 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLK 203 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccCe
Confidence 4578999999987778889999988765455565566544 677888877754 89999999999999999999999999
Q ss_pred EEEEccchh
Q psy7557 226 FVVLDEADR 234 (936)
Q Consensus 226 ~lViDEah~ 234 (936)
+||||--|+
T Consensus 204 ~ivlD~s~~ 212 (252)
T PF14617_consen 204 RIVLDWSYL 212 (252)
T ss_pred EEEEcCCcc
Confidence 999997653
No 359
>PRK10536 hypothetical protein; Provisional
Probab=97.30 E-value=0.0037 Score=63.96 Aligned_cols=143 Identities=17% Similarity=0.165 Sum_probs=77.9
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHH-------H
Q psy7557 94 LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQ-------I 166 (936)
Q Consensus 94 ~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q-------~ 166 (936)
.++.-.+..|...+..+.++..+++.||+|||||+.+...++..+.. ..-.+++|.-|+.+.... +
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~-------~~~~kIiI~RP~v~~ge~LGfLPG~~ 127 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH-------KDVDRIIVTRPVLQADEDLGFLPGDI 127 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc-------CCeeEEEEeCCCCCchhhhCcCCCCH
Confidence 34555688999999999888888888999999999876655544422 223456777676543221 1
Q ss_pred HHHHHhcc---CCCCEEEEEeCCccchHHHHHhh--cCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCH
Q psy7557 167 EREVNKID---YKGLKAVCVYGGKEIEPQLEKIR--EGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFE 241 (936)
Q Consensus 167 ~~~~~~~~---~~~~~~~~~~gg~~~~~~~~~~~--~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~ 241 (936)
.+.+..+. ...+. .+.|. .....+. ..-.|-|... .++.... + +-++||+|||+.+. .
T Consensus 128 ~eK~~p~~~pi~D~L~--~~~~~----~~~~~~~~~~~~~Iei~~l----~ymRGrt--l-~~~~vIvDEaqn~~----~ 190 (262)
T PRK10536 128 AEKFAPYFRPVYDVLV--RRLGA----SFMQYCLRPEIGKVEIAPF----AYMRGRT--F-ENAVVILDEAQNVT----A 190 (262)
T ss_pred HHHHHHHHHHHHHHHH--HHhCh----HHHHHHHHhccCcEEEecH----HHhcCCc--c-cCCEEEEechhcCC----H
Confidence 12111110 00000 00011 1111111 1123444432 3333222 2 23799999999864 3
Q ss_pred HHHHHHHhhcCCCCcEEEE
Q psy7557 242 PQINKTSIYINPNRQTVMT 260 (936)
Q Consensus 242 ~~~~~i~~~~~~~~q~~~~ 260 (936)
.++..++..+..+.++++.
T Consensus 191 ~~~k~~ltR~g~~sk~v~~ 209 (262)
T PRK10536 191 AQMKMFLTRLGENVTVIVN 209 (262)
T ss_pred HHHHHHHhhcCCCCEEEEe
Confidence 6667777777666665543
No 360
>PRK10536 hypothetical protein; Provisional
Probab=97.26 E-value=0.0045 Score=63.40 Aligned_cols=144 Identities=17% Similarity=0.162 Sum_probs=78.4
Q ss_pred CCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHH-------H
Q psy7557 614 LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQ-------I 686 (936)
Q Consensus 614 ~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q-------~ 686 (936)
.++.-.+..|...+..+.++..+++.+|+|+|||+.+....+..+.. +.-.++++.=|+.+.... .
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~-------~~~~kIiI~RP~v~~ge~LGfLPG~~ 127 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH-------KDVDRIIVTRPVLQADEDLGFLPGDI 127 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc-------CCeeEEEEeCCCCCchhhhCcCCCCH
Confidence 35556688999999999888889999999999998776655544422 123456666666543211 1
Q ss_pred HHHHHhccC---CCCEEEEEECCccchHHHHHH-h-cCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCH
Q psy7557 687 EREVNKIDY---KGLKAVCVYGGKELEPQLEKI-R-EGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFE 761 (936)
Q Consensus 687 ~~~~~~~~~---~~~~~~~~~gg~~~~~~~~~l-~-~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~ 761 (936)
.+.+..|.. ..+. .+.|. .....+ . ....|-|... .+++... +. -++||+|||+.+. .
T Consensus 128 ~eK~~p~~~pi~D~L~--~~~~~----~~~~~~~~~~~~~Iei~~l----~ymRGrt--l~-~~~vIvDEaqn~~----~ 190 (262)
T PRK10536 128 AEKFAPYFRPVYDVLV--RRLGA----SFMQYCLRPEIGKVEIAPF----AYMRGRT--FE-NAVVILDEAQNVT----A 190 (262)
T ss_pred HHHHHHHHHHHHHHHH--HHhCh----HHHHHHHHhccCcEEEecH----HHhcCCc--cc-CCEEEEechhcCC----H
Confidence 111111100 0000 00111 111111 1 1123444442 2333222 22 3799999999863 3
Q ss_pred HHHHHHhhhcCCCceEEEEE
Q psy7557 762 PQINKTSIYINPNRQTVMTS 781 (936)
Q Consensus 762 ~~~~~i~~~~~~~~q~v~~S 781 (936)
.++..++..+..+.++|+.-
T Consensus 191 ~~~k~~ltR~g~~sk~v~~G 210 (262)
T PRK10536 191 AQMKMFLTRLGENVTVIVNG 210 (262)
T ss_pred HHHHHHHhhcCCCCEEEEeC
Confidence 56677777777777766543
No 361
>PF13245 AAA_19: Part of AAA domain
Probab=97.26 E-value=0.00064 Score=56.11 Aligned_cols=60 Identities=27% Similarity=0.352 Sum_probs=39.1
Q ss_pred HHHhhhcCCc-EEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHH
Q psy7557 626 AWPILMSGHD-MIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREV 690 (936)
Q Consensus 626 ai~~~l~g~d-~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~ 690 (936)
|+...+++.. +++.||.|||||...+-.+....... ... +.++++++||+..+.++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~----~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAAR----ADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHh----cCC-CCeEEEECCCHHHHHHHHHHH
Confidence 3443344444 55599999999965443333222111 112 678999999999999988888
No 362
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.25 E-value=0.004 Score=62.51 Aligned_cols=131 Identities=24% Similarity=0.309 Sum_probs=84.6
Q ss_pred CCcHHHHHHHHHHhc---CCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHh-c
Q psy7557 98 TPSPIQAQAWPILMS---GHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK-I 173 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~~---g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~-~ 173 (936)
-.++.|.+....+.+ |+|.+..+-.|.|||.+ ++|++...+.. ...-+.+++| ++|..|+.+.++. +
T Consensus 23 liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAd-------g~~LvrviVp-k~Ll~q~~~~L~~~l 93 (229)
T PF12340_consen 23 LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALAD-------GSRLVRVIVP-KALLEQMRQMLRSRL 93 (229)
T ss_pred eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcC-------CCcEEEEEcC-HHHHHHHHHHHHHHH
Confidence 679999999888774 68999999999999998 77888777642 2345667777 5799999888876 4
Q ss_pred cC-CCCEEEE--EeCCccchH--------HHHHhhcCCcEEEeCCchhHHHHHc-------CCc-----------CCCCc
Q psy7557 174 DY-KGLKAVC--VYGGKEIEP--------QLEKIREGCHILIATPGRLNDFVSR-------ASI-----------DLKAV 224 (936)
Q Consensus 174 ~~-~~~~~~~--~~gg~~~~~--------~~~~~~~~~~Iiv~Tp~~l~~~l~~-------~~~-----------~~~~~ 224 (936)
+. .+-++.. ......... ..........|+++||+.+..+... +.. .+.+.
T Consensus 94 g~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~ 173 (229)
T PF12340_consen 94 GGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEH 173 (229)
T ss_pred HHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Confidence 32 2223322 223332221 1123334467999999987654321 110 13334
Q ss_pred eEEEEccchhhhc
Q psy7557 225 SFVVLDEADRMLD 237 (936)
Q Consensus 225 ~~lViDEah~l~~ 237 (936)
..=|+||+|..+.
T Consensus 174 ~rdilDEsDe~L~ 186 (229)
T PF12340_consen 174 SRDILDESDEILS 186 (229)
T ss_pred CCeEeECchhccC
Confidence 4568899997654
No 363
>KOG1803|consensus
Probab=97.25 E-value=0.0015 Score=72.94 Aligned_cols=65 Identities=23% Similarity=0.233 Sum_probs=50.8
Q ss_pred CCcHHHHHHHHhhhcCCc-EEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHH
Q psy7557 618 TPSPIQAQAWPILMSGHD-MIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVN 691 (936)
Q Consensus 618 ~p~~iQ~~ai~~~l~g~d-~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~ 691 (936)
.+.+-|.+|+...++.++ .++.+|+|+|||..-..-+.+.+ ..+.++|+.+||.+-+..+.+++.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlv---------k~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLV---------KQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHH---------HcCCeEEEEcCchHHHHHHHHHhc
Confidence 678899999999998755 67779999999987554444333 346899999999998888877644
No 364
>KOG1802|consensus
Probab=97.23 E-value=0.0018 Score=72.46 Aligned_cols=84 Identities=23% Similarity=0.248 Sum_probs=65.2
Q ss_pred HHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHH
Q psy7557 90 QLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIERE 169 (936)
Q Consensus 90 ~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~ 169 (936)
.+...|+.+++.-|..|...+++..=.|+.+|.|+|||.+..- ++.++.. .....+|+.+|+.--+.|+++.
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~-IVyhl~~-------~~~~~VLvcApSNiAVDqLaeK 473 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLAR-------QHAGPVLVCAPSNIAVDQLAEK 473 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHH-HHHHHHH-------hcCCceEEEcccchhHHHHHHH
Confidence 3444577788999999999999988889999999999997543 4444433 2345799999999999999888
Q ss_pred HHhccCCCCEEEEEe
Q psy7557 170 VNKIDYKGLKAVCVY 184 (936)
Q Consensus 170 ~~~~~~~~~~~~~~~ 184 (936)
+.+. |++++.+.
T Consensus 474 Ih~t---gLKVvRl~ 485 (935)
T KOG1802|consen 474 IHKT---GLKVVRLC 485 (935)
T ss_pred HHhc---CceEeeee
Confidence 8773 56666654
No 365
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.21 E-value=0.00042 Score=67.62 Aligned_cols=77 Identities=23% Similarity=0.317 Sum_probs=58.5
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhcCC--ceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecc--cCccCCCCCC--CCEEE
Q psy7557 842 RDKVMVFMGRKASVSAMSSDLACQYR--KSCSLYGDLSQEDREIALEDITSGYARICVATD--VASRGLDVPD--LTHVI 915 (936)
Q Consensus 842 ~~~~iIF~~s~~~~~~l~~~L~~~~~--~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~--~~~~Gidip~--v~~VI 915 (936)
.+.++||++|....+.+...+..... +...+.. +..++..+++.|+++...||+|+. .+++|||+|+ ++.||
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vi 86 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVI 86 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheee
Confidence 48899999999999999998876542 2233333 356788999999999999999998 9999999997 66799
Q ss_pred EccCC
Q psy7557 916 NYDFP 920 (936)
Q Consensus 916 ~~d~p 920 (936)
...+|
T Consensus 87 i~glP 91 (167)
T PF13307_consen 87 IVGLP 91 (167)
T ss_dssp EES--
T ss_pred ecCCC
Confidence 98888
No 366
>KOG0388|consensus
Probab=97.21 E-value=0.00075 Score=75.69 Aligned_cols=127 Identities=18% Similarity=0.228 Sum_probs=110.0
Q ss_pred chhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCc-EEEEEeccc
Q psy7557 304 EDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYA-RICVATDVA 382 (936)
Q Consensus 304 ~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~-~vLvaT~~~ 382 (936)
+..|...|-.+|..+...++++++|..--+..+-+.++|..+++...-+.|.....+|..+..+|....+ -.|.+|.+.
T Consensus 1026 dSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAG 1105 (1185)
T KOG0388|consen 1026 DSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAG 1105 (1185)
T ss_pred cccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccC
Confidence 3456667777888888889999999999999999999999999999999999999999999999998654 467899999
Q ss_pred ccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCce--eEEEEecccC
Q psy7557 383 SRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSG--ESITLMTRKD 430 (936)
Q Consensus 383 ~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g--~~~~~~~~~~ 430 (936)
+-||++-+.++||.||.-+++.--.|-.-||-|-|+.- ..+-+++...
T Consensus 1106 GLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgT 1155 (1185)
T KOG0388|consen 1106 GLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGT 1155 (1185)
T ss_pred cccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeeccccc
Confidence 99999999999999999999998899999999988763 4556666554
No 367
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.20 E-value=0.00077 Score=69.00 Aligned_cols=86 Identities=26% Similarity=0.451 Sum_probs=69.5
Q ss_pred CCCCEEEEEecCHHHHHHHHHHHHhccCCCCEEEEEECCc-cchHHHHHHhc-CceEEEeCchHHHHHHHcCCCCCCCce
Q psy7557 668 RAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGK-ELEPQLEKIRE-GCHILIATPGRLNDFVSRASIDLKAVS 745 (936)
Q Consensus 668 ~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~-~~~~~~~~l~~-~~~IiV~Tp~~l~~~l~~~~~~~~~i~ 745 (936)
...|.+|||+.+--=|..+.+.++.+...+..++-+++-. ..+++...+.. ..+|.||||+|+..++..+.+.++++.
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~ 203 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLK 203 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccCe
Confidence 4578999999987777788888887754445565566554 66777777775 489999999999999999999999999
Q ss_pred EEEEcccc
Q psy7557 746 FVVLDEAD 753 (936)
Q Consensus 746 ~lViDEah 753 (936)
+||||--|
T Consensus 204 ~ivlD~s~ 211 (252)
T PF14617_consen 204 RIVLDWSY 211 (252)
T ss_pred EEEEcCCc
Confidence 99999766
No 368
>KOG1132|consensus
Probab=97.15 E-value=0.0028 Score=73.68 Aligned_cols=79 Identities=23% Similarity=0.344 Sum_probs=51.8
Q ss_pred CCcHHHHHHHHhhh----cCCcEEEEecCCCCcchhhHHHHHHHhhccC-----------C-------CC---------c
Q psy7557 618 TPSPIQAQAWPILM----SGHDMIGIAQTGTGKTFAFLLPALIHTHLQT-----------T-------PI---------S 666 (936)
Q Consensus 618 ~p~~iQ~~ai~~~l----~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~-----------~-------~~---------~ 666 (936)
+|+|.|..-+..++ +..+.++-+|||+|||++-+-..+.+..... . +. .
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 78999988776655 5678999999999999976555443322111 0 00 0
Q ss_pred c------CCCCEEEEEecCHHHHHHHHHHHHhccCC
Q psy7557 667 E------RAGPSVLVMAPTRELATQIEREVNKIDYK 696 (936)
Q Consensus 667 ~------~~~~~~lil~Pt~~La~Q~~~~~~~~~~~ 696 (936)
. ..-|++.|-.-|..-..|+.+++++..+.
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~ 136 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR 136 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCCC
Confidence 0 02456777777777777888888876444
No 369
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=97.01 E-value=0.003 Score=79.76 Aligned_cols=125 Identities=20% Similarity=0.224 Sum_probs=106.9
Q ss_pred hhHHHHHHHH-HhccCCCC--cEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcC--CcEEEEEec
Q psy7557 306 EKKDWLMEFF-DNMDEERD--KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSG--YARICVATD 380 (936)
Q Consensus 306 ~k~~~l~~~l-~~~~~~~~--~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g--~~~vLvaT~ 380 (936)
.|...+.+++ ......+. +++||++.....+-+...+...++....++|.++.++|...++.|.++ ..-.+++|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 5677777777 45555666 999999999999999999999998899999999999999999999986 455677788
Q ss_pred ccccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCcee--EEEEecccC
Q psy7557 381 VASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGE--SITLMTRKD 430 (936)
Q Consensus 381 ~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~--~~~~~~~~~ 430 (936)
+.+.|+|+-..++||+||+.+++....|...|+-|-|+... .+-+++.+.
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGT 823 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCc
Confidence 99999999999999999999999999999999999887754 445555554
No 370
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.99 E-value=0.0051 Score=74.29 Aligned_cols=131 Identities=18% Similarity=0.094 Sum_probs=76.8
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhc
Q psy7557 94 LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 173 (936)
Q Consensus 94 ~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 173 (936)
.++ .+++-|.+|+..+..++-+++.|+.|+|||.+. -.++..+... .....+++++||-.-|..+.+...
T Consensus 320 ~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~------~~~~~v~l~ApTg~AA~~L~e~~g-- 389 (720)
T TIGR01448 320 LRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEEL------GGLLPVGLAAPTGRAAKRLGEVTG-- 389 (720)
T ss_pred cCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHc------CCCceEEEEeCchHHHHHHHHhcC--
Confidence 455 799999999999998888999999999999753 2223222110 111578889999887765544321
Q ss_pred cCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHHHhhcCC
Q psy7557 174 DYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINP 253 (936)
Q Consensus 174 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~ 253 (936)
... ... ..+.. ..|+..... ..-.....++||+|||+.+. ...+..++..++.
T Consensus 390 ----~~a------~Ti----h~lL~------~~~~~~~~~---~~~~~~~~~llIvDEaSMvd----~~~~~~Ll~~~~~ 442 (720)
T TIGR01448 390 ----LTA------STI----HRLLG------YGPDTFRHN---HLEDPIDCDLLIVDESSMMD----TWLALSLLAALPD 442 (720)
T ss_pred ----Ccc------ccH----HHHhh------ccCCccchh---hhhccccCCEEEEeccccCC----HHHHHHHHHhCCC
Confidence 110 001 11100 001110000 00112457899999999763 3455666666777
Q ss_pred CCcEEEEE
Q psy7557 254 NRQTVMTS 261 (936)
Q Consensus 254 ~~q~~~~S 261 (936)
..+++++-
T Consensus 443 ~~rlilvG 450 (720)
T TIGR01448 443 HARLLLVG 450 (720)
T ss_pred CCEEEEEC
Confidence 77776654
No 371
>KOG0391|consensus
Probab=96.97 E-value=0.004 Score=73.84 Aligned_cols=122 Identities=18% Similarity=0.264 Sum_probs=102.5
Q ss_pred hhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCC--cEEEEEeccc
Q psy7557 305 DEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGY--ARICVATDVA 382 (936)
Q Consensus 305 ~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~--~~vLvaT~~~ 382 (936)
..|+..|.-+|..++..++++|||+.-.+..+-|...|..+|+-..-+.|...-++|...++.|.... ...+.+|-.-
T Consensus 1259 cGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSg 1338 (1958)
T KOG0391|consen 1259 CGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSG 1338 (1958)
T ss_pred cchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCC
Confidence 35667777778887788999999999999999999999999999999999999999999999998654 3456789999
Q ss_pred ccCCCCCCCcEEEEecCCCCc------cccccCCCCcccCCCceeEEEEecccC
Q psy7557 383 SRGLDVPDLTHVINYDFPSHI------EEYVHRVGRTGRAGKSGESITLMTRKD 430 (936)
Q Consensus 383 ~~GiDip~v~~VI~~d~p~s~------~~y~qr~GRagR~g~~g~~~~~~~~~~ 430 (936)
+.|||+-+.++||.||.-+++ .+..||||+| +.=+-|-|+++..
T Consensus 1339 gvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqt----RDVHIYRLISe~T 1388 (1958)
T KOG0391|consen 1339 GVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT----RDVHIYRLISERT 1388 (1958)
T ss_pred ccccccccCceEEEecCCCCchhhhHHHHHHHhhcCc----cceEEEEeeccch
Confidence 999999999999999987764 3567888877 3466777787764
No 372
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.95 E-value=0.0085 Score=70.35 Aligned_cols=136 Identities=17% Similarity=0.155 Sum_probs=79.8
Q ss_pred cHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhc-cCCCC
Q psy7557 100 SPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI-DYKGL 178 (936)
Q Consensus 100 ~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~-~~~~~ 178 (936)
.++|..|+-.++.++-.++.|+.|+|||.+.. -++..+.... ......+++.+||..-|..+.+.+... ...++
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~-~ll~~l~~~~----~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVA-KLLAALIQLA----DGERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH-HHHHHHHHhc----CCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 58999999999998899999999999998532 1222221110 122457899999999888888777542 11111
Q ss_pred EEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHc---------CCcCCCCceEEEEccchhhhcCCCHHHHHHHHh
Q psy7557 179 KAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSR---------ASIDLKAVSFVVLDEADRMLDLGFEPQINKTSI 249 (936)
Q Consensus 179 ~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~---------~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~ 249 (936)
. ...... ...-..| +.+++.. ..-+.-..+++|||||-.+ -...+..++.
T Consensus 229 ~----------~~~~~~----~~~~a~T---iHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv----d~~lm~~ll~ 287 (615)
T PRK10875 229 T----------DEQKKR----IPEEAST---LHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV----DLPMMARLID 287 (615)
T ss_pred c----------hhhhhc----CCCchHH---HHHHhCcCCCccchhhccccCCCCCeEEEChHhcc----cHHHHHHHHH
Confidence 0 000000 0001111 2222211 1112334689999999854 2455666777
Q ss_pred hcCCCCcEEEEE
Q psy7557 250 YINPNRQTVMTS 261 (936)
Q Consensus 250 ~~~~~~q~~~~S 261 (936)
.+++..++|++-
T Consensus 288 al~~~~rlIlvG 299 (615)
T PRK10875 288 ALPPHARVIFLG 299 (615)
T ss_pred hcccCCEEEEec
Confidence 777777776654
No 373
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.91 E-value=0.0049 Score=72.28 Aligned_cols=141 Identities=18% Similarity=0.137 Sum_probs=83.2
Q ss_pred cHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhcc-CCCC
Q psy7557 620 SPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID-YKGL 698 (936)
Q Consensus 620 ~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~-~~~~ 698 (936)
.++|..|+-..+.++-.++.+++|+|||.+.. -++..+... .......+++.+||..-|..+.+.+.... ..+.
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~-~ll~~l~~~----~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVA-KLLAALIQL----ADGERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH-HHHHHHHHh----cCCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 58999999999999999999999999997532 122222111 01234578899999888888777665421 1110
Q ss_pred EEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHH------cCCCCCCCceEEEEcccchhccCCCHHHHHHHhhhcC
Q psy7557 699 KAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVS------RASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYIN 772 (936)
Q Consensus 699 ~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~------~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~~ 772 (936)
. +.. ......-..|--+++.... ....+.-..++|||||+-.+ + ...+..++..++
T Consensus 229 ---------~-~~~----~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv-d---~~lm~~ll~al~ 290 (615)
T PRK10875 229 ---------T-DEQ----KKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV-D---LPMMARLIDALP 290 (615)
T ss_pred ---------c-hhh----hhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc-c---HHHHHHHHHhcc
Confidence 0 000 0000111223222222111 11122345689999999954 3 456667777888
Q ss_pred CCceEEEEEec
Q psy7557 773 PNRQTVMTSAT 783 (936)
Q Consensus 773 ~~~q~v~~SAT 783 (936)
++.++|++-=.
T Consensus 291 ~~~rlIlvGD~ 301 (615)
T PRK10875 291 PHARVIFLGDR 301 (615)
T ss_pred cCCEEEEecch
Confidence 88888877543
No 374
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.86 E-value=0.0069 Score=70.96 Aligned_cols=140 Identities=19% Similarity=0.174 Sum_probs=79.6
Q ss_pred cHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhc-cCCCC
Q psy7557 100 SPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI-DYKGL 178 (936)
Q Consensus 100 ~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~-~~~~~ 178 (936)
.+.|..|+..++.++-.++.|+.|||||.+.. .++..+..... ...++++++.+||-.-|..+.+.+... ...+.
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~-~ll~~l~~~~~---~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~ 222 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVA-RLLLALVKQSP---KQGKLRIALAAPTGKAAARLAESLRKAVKNLAA 222 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHH-HHHHHHHHhcc---ccCCCcEEEECCcHHHHHHHHHHHHhhhccccc
Confidence 37899999999999999999999999998532 22222221110 011357999999988888877776542 11110
Q ss_pred EEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHH------HcCCcCCCCceEEEEccchhhhcCCCHHHHHHHHhhcC
Q psy7557 179 KAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFV------SRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYIN 252 (936)
Q Consensus 179 ~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l------~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~ 252 (936)
. .... ....+-..|--+++... ....-+...+++||||||=.+- ...+..++..++
T Consensus 223 ~----------~~~~----~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~ 284 (586)
T TIGR01447 223 A----------EALI----AALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALP 284 (586)
T ss_pred c----------hhhh----hccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcC
Confidence 0 0000 00011122222221110 0011123357999999998542 345666777777
Q ss_pred CCCcEEEEE
Q psy7557 253 PNRQTVMTS 261 (936)
Q Consensus 253 ~~~q~~~~S 261 (936)
+..++|++-
T Consensus 285 ~~~rlIlvG 293 (586)
T TIGR01447 285 PNTKLILLG 293 (586)
T ss_pred CCCEEEEEC
Confidence 777766554
No 375
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.86 E-value=0.0093 Score=72.02 Aligned_cols=134 Identities=19% Similarity=0.105 Sum_probs=78.5
Q ss_pred hCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHh
Q psy7557 613 NLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK 692 (936)
Q Consensus 613 ~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 692 (936)
..++ .+++-|.+|+..+..++-+++.++.|+|||.+.- .++..+... +....+++++||-.-|..+.+..
T Consensus 319 ~~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~-~i~~~~~~~------~~~~~v~l~ApTg~AA~~L~e~~-- 388 (720)
T TIGR01448 319 KLRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTITR-AIIELAEEL------GGLLPVGLAAPTGRAAKRLGEVT-- 388 (720)
T ss_pred hcCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHH-HHHHHHHHc------CCCceEEEEeCchHHHHHHHHhc--
Confidence 3565 7899999999999988899999999999997432 222222111 11257888999988776544332
Q ss_pred ccCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHHHhhhcC
Q psy7557 693 IDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYIN 772 (936)
Q Consensus 693 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~~ 772 (936)
+.... ....+... .|+..... ..-.....++||+|||+.+. ...+..++..++
T Consensus 389 ----g~~a~----------Tih~lL~~------~~~~~~~~---~~~~~~~~~llIvDEaSMvd----~~~~~~Ll~~~~ 441 (720)
T TIGR01448 389 ----GLTAS----------TIHRLLGY------GPDTFRHN---HLEDPIDCDLLIVDESSMMD----TWLALSLLAALP 441 (720)
T ss_pred ----CCccc----------cHHHHhhc------cCCccchh---hhhccccCCEEEEeccccCC----HHHHHHHHHhCC
Confidence 11100 00111000 01100000 00113457899999999653 334566666777
Q ss_pred CCceEEEEEec
Q psy7557 773 PNRQTVMTSAT 783 (936)
Q Consensus 773 ~~~q~v~~SAT 783 (936)
++.+++++-=+
T Consensus 442 ~~~rlilvGD~ 452 (720)
T TIGR01448 442 DHARLLLVGDT 452 (720)
T ss_pred CCCEEEEECcc
Confidence 78888776443
No 376
>KOG1132|consensus
Probab=96.84 E-value=0.0055 Score=71.34 Aligned_cols=83 Identities=24% Similarity=0.360 Sum_probs=53.9
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEecCCCCcchhchHHHHHHhhcCC-----------C-------CCC---------
Q psy7557 98 TPSPIQAQAWPILM----SGHDMIGIAQTGTGKTFAFLLPALIHTHLQT-----------T-------PIS--------- 146 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~----~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~-----------~-------~~~--------- 146 (936)
.|+|.|..-+..++ ++.+.++.+|||+|||++-+-..+....... . +..
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 68899988877665 4578999999999999986655443332111 0 000
Q ss_pred -C-----CCCCEEEEEcCcHHHHHHHHHHHHhccCCCCEEE
Q psy7557 147 -E-----RAGPSVLVMAPTRELATQIEREVNKIDYKGLKAV 181 (936)
Q Consensus 147 -~-----~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~ 181 (936)
+ ..-|++.|-.-|..=..|+.+++++..+. ++..
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~-vkmt 140 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR-VKMT 140 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCCC-CceE
Confidence 0 01356777777777778888888886444 4433
No 377
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.77 E-value=0.011 Score=72.53 Aligned_cols=64 Identities=25% Similarity=0.147 Sum_probs=47.1
Q ss_pred hCCCCCCcHHHHHHHHHHhcCCc-EEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHH
Q psy7557 93 NLSFTTPSPIQAQAWPILMSGHD-MIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQI 166 (936)
Q Consensus 93 ~~g~~~~~~~Q~~ai~~~~~g~d-~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~ 166 (936)
..|+ .+++-|.+|+..++++++ +++.|+.|+|||.+ +-+ +..+.. ..|.+++.++||---|..+
T Consensus 342 ~~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~-~~~~~e-------~~G~~V~~~ApTGkAA~~L 406 (988)
T PRK13889 342 ARGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGV-AREAWE-------AAGYEVRGAALSGIAAENL 406 (988)
T ss_pred hcCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHH-HHHHHH-------HcCCeEEEecCcHHHHHHH
Confidence 3455 799999999999998766 56779999999975 333 333321 3477899999997765544
No 378
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.73 E-value=0.012 Score=68.87 Aligned_cols=142 Identities=21% Similarity=0.206 Sum_probs=82.7
Q ss_pred HHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhccCCCCEE
Q psy7557 621 PIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKA 700 (936)
Q Consensus 621 ~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~ 700 (936)
+.|..|+..++.++-.++.++.|+|||.+.. .++..+..... ...+.++++.+||---|..+.+.+.... ..+..
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~-~ll~~l~~~~~---~~~~~~I~l~APTGkAA~rL~e~~~~~~-~~l~~ 222 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVA-RLLLALVKQSP---KQGKLRIALAAPTGKAAARLAESLRKAV-KNLAA 222 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHH-HHHHHHHHhcc---ccCCCcEEEECCcHHHHHHHHHHHHhhh-ccccc
Confidence 7999999999999999999999999997532 22222211110 0113579999999888777777665421 01100
Q ss_pred EEEECCccchHHHHHHhcCceEEEeCchHHHHHHH------cCCCCCCCceEEEEcccchhccCCCHHHHHHHhhhcCCC
Q psy7557 701 VCVYGGKELEPQLEKIREGCHILIATPGRLNDFVS------RASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPN 774 (936)
Q Consensus 701 ~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~------~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~~~~ 774 (936)
. ... .....+-..|-.+++.... ....+...+++||||||=.+ + ...+..++..+++.
T Consensus 223 -------~-~~~----~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMv-d---~~l~~~ll~al~~~ 286 (586)
T TIGR01447 223 -------A-EAL----IAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMV-D---LPLMAKLLKALPPN 286 (586)
T ss_pred -------c-hhh----hhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccC-C---HHHHHHHHHhcCCC
Confidence 0 000 0001111334333322211 11122346799999999854 3 34566777778888
Q ss_pred ceEEEEEec
Q psy7557 775 RQTVMTSAT 783 (936)
Q Consensus 775 ~q~v~~SAT 783 (936)
.++|++-=.
T Consensus 287 ~rlIlvGD~ 295 (586)
T TIGR01447 287 TKLILLGDK 295 (586)
T ss_pred CEEEEECCh
Confidence 888876533
No 379
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.62 E-value=0.02 Score=69.55 Aligned_cols=61 Identities=23% Similarity=0.164 Sum_probs=45.1
Q ss_pred CCcHHHHHHHHHHhcC-CcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHH
Q psy7557 98 TPSPIQAQAWPILMSG-HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIE 167 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~~g-~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~ 167 (936)
.+++-|.+|+..++.+ +-+++.|+.|+|||.. +-.+..... ..+..+++++||---|..+.
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl--l~~i~~~~~-------~~g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM--LKAAREAWE-------AAGYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH--HHHHHHHHH-------hCCCeEEEEeCcHHHHHHHH
Confidence 6899999999998875 5568889999999974 333333322 24678999999977666554
No 380
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.60 E-value=0.023 Score=69.96 Aligned_cols=128 Identities=23% Similarity=0.158 Sum_probs=76.7
Q ss_pred HhCCCCCCcHHHHHHHHhhhcCCc-EEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHH
Q psy7557 612 ENLSFTTPSPIQAQAWPILMSGHD-MIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREV 690 (936)
Q Consensus 612 ~~~g~~~p~~iQ~~ai~~~l~g~d-~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~ 690 (936)
...|+ .+++-|.+|+..++++++ +++.++.|+|||.+ +-++...+ . ..|.+++.++||---|..+.+.
T Consensus 341 ~~~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~-e-------~~G~~V~~~ApTGkAA~~L~e~- 409 (988)
T PRK13889 341 EARGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAW-E-------AAGYEVRGAALSGIAAENLEGG- 409 (988)
T ss_pred HhcCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHH-H-------HcCCeEEEecCcHHHHHHHhhc-
Confidence 34566 799999999999998665 67889999999975 22333322 1 3477899999997765444321
Q ss_pred HhccCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHHHhhh
Q psy7557 691 NKIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIY 770 (936)
Q Consensus 691 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~ 770 (936)
.++.. .|..+|..-...+...+...++||||||-.+... .+..++..
T Consensus 410 -----tGi~a------------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~~----~m~~LL~~ 456 (988)
T PRK13889 410 -----SGIAS------------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGTR----QLERVLSH 456 (988)
T ss_pred -----cCcch------------------------hhHHHHHhhhcccccccccCcEEEEECcccCCHH----HHHHHHHh
Confidence 12110 0211221111122334667789999999965432 34444443
Q ss_pred c-CCCceEEEEEec
Q psy7557 771 I-NPNRQTVMTSAT 783 (936)
Q Consensus 771 ~-~~~~q~v~~SAT 783 (936)
. +.+.++|++-=+
T Consensus 457 a~~~garvVLVGD~ 470 (988)
T PRK13889 457 AADAGAKVVLVGDP 470 (988)
T ss_pred hhhCCCEEEEECCH
Confidence 3 456676666543
No 381
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.56 E-value=0.027 Score=68.40 Aligned_cols=124 Identities=19% Similarity=0.153 Sum_probs=73.2
Q ss_pred CCCCCCcHHHHHHHHhhhcC-CcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHh
Q psy7557 614 LSFTTPSPIQAQAWPILMSG-HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK 692 (936)
Q Consensus 614 ~g~~~p~~iQ~~ai~~~l~g-~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 692 (936)
.++ .+++-|.+|+..++.+ +-+++.++.|+|||...- .+..... ..|..+++++||---|..+.+.
T Consensus 349 ~~~-~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~--~i~~~~~-------~~g~~V~~~ApTg~Aa~~L~~~--- 415 (744)
T TIGR02768 349 QHY-RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLK--AAREAWE-------AAGYRVIGAALSGKAAEGLQAE--- 415 (744)
T ss_pred ccC-CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHH--HHHHHHH-------hCCCeEEEEeCcHHHHHHHHhc---
Confidence 344 6899999999998874 567888999999996432 2322222 2467899999997766554422
Q ss_pred ccCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHHHhhh-c
Q psy7557 693 IDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIY-I 771 (936)
Q Consensus 693 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~-~ 771 (936)
.++... |-.++..-.......+...++||||||-.+... .+..++.. .
T Consensus 416 ---~g~~a~------------------------Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~~----~~~~Ll~~~~ 464 (744)
T TIGR02768 416 ---SGIESR------------------------TLASLEYAWANGRDLLSDKDVLVIDEAGMVGSR----QMARVLKEAE 464 (744)
T ss_pred ---cCCcee------------------------eHHHHHhhhccCcccCCCCcEEEEECcccCCHH----HHHHHHHHHH
Confidence 122111 111121111222334567899999999965432 23333332 2
Q ss_pred CCCceEEEEE
Q psy7557 772 NPNRQTVMTS 781 (936)
Q Consensus 772 ~~~~q~v~~S 781 (936)
....++|++-
T Consensus 465 ~~~~kliLVG 474 (744)
T TIGR02768 465 EAGAKVVLVG 474 (744)
T ss_pred hcCCEEEEEC
Confidence 3456666554
No 382
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.56 E-value=0.0069 Score=63.80 Aligned_cols=141 Identities=21% Similarity=0.270 Sum_probs=87.9
Q ss_pred CCCCCCcHHHHHHHHhhhcCC--cEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHH
Q psy7557 614 LSFTTPSPIQAQAWPILMSGH--DMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVN 691 (936)
Q Consensus 614 ~g~~~p~~iQ~~ai~~~l~g~--d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~ 691 (936)
+|+.--+..|.-|+..++... =|.+.++-|||||+-++.+.+...... +...++++.=|+..+-+.+
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~------~~y~KiiVtRp~vpvG~dI----- 292 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLER------KRYRKIIVTRPTVPVGEDI----- 292 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHH------hhhceEEEecCCcCccccc-----
Confidence 578677888999999998753 467779999999999888888777653 3456788888877663221
Q ss_pred hccCCCCEEEEEECCc---------cchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCc----------eEEEEccc
Q psy7557 692 KIDYKGLKAVCVYGGK---------ELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAV----------SFVVLDEA 752 (936)
Q Consensus 692 ~~~~~~~~~~~~~gg~---------~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i----------~~lViDEa 752 (936)
..+-|.. ...+....+.+..+ ++-+.+..++.++.+.+..+ .++|||||
T Consensus 293 ---------GfLPG~eEeKm~PWmq~i~DnLE~L~~~~~---~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEa 360 (436)
T COG1875 293 ---------GFLPGTEEEKMGPWMQAIFDNLEVLFSPNE---PGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEA 360 (436)
T ss_pred ---------CcCCCchhhhccchHHHHHhHHHHHhcccc---cchHHHHHHHhccceeeeeeeeecccccccceEEEehh
Confidence 1111110 00111111111111 12344555555554433222 57999999
Q ss_pred chhccCCCHHHHHHHhhhcCCCceEEEEE
Q psy7557 753 DRMLDLGFEPQINKTSIYINPNRQTVMTS 781 (936)
Q Consensus 753 h~l~~~~~~~~~~~i~~~~~~~~q~v~~S 781 (936)
+.+- ..++..|.....++..+|++.
T Consensus 361 QNLT----pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 361 QNLT----PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred hccC----HHHHHHHHHhccCCCEEEEcC
Confidence 9873 567788888888888877754
No 383
>PRK14974 cell division protein FtsY; Provisional
Probab=96.46 E-value=0.019 Score=62.15 Aligned_cols=55 Identities=20% Similarity=0.320 Sum_probs=41.4
Q ss_pred CCceEEEEccchhhh-cCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhc
Q psy7557 222 KAVSFVVLDEADRML-DLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYM 276 (936)
Q Consensus 222 ~~~~~lViDEah~l~-~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~ 276 (936)
...++++||.+.++. +..+...+..+.....++.-++.++||...+....++.|.
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFN 276 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHH
Confidence 356799999999885 3445667777777777888889999998877666666654
No 384
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.45 E-value=0.0061 Score=66.59 Aligned_cols=68 Identities=16% Similarity=0.126 Sum_probs=49.7
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhc
Q psy7557 99 PSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 173 (936)
Q Consensus 99 ~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 173 (936)
+|+-|.+++.. ...+++|.|+.|||||.+.+--+...+.... ....++|++++|+..|.++.+++...
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-----~~~~~Il~lTft~~aa~e~~~ri~~~ 68 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-----VPPERILVLTFTNAAAQEMRERIREL 68 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-----STGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-----CChHHheecccCHHHHHHHHHHHHHh
Confidence 57889999988 6678999999999999975543333332211 23457999999999999999998873
No 385
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.43 E-value=0.014 Score=61.67 Aligned_cols=141 Identities=21% Similarity=0.266 Sum_probs=85.5
Q ss_pred CCCCCCcHHHHHHHHHHhcCC--cEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHH
Q psy7557 94 LSFTTPSPIQAQAWPILMSGH--DMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVN 171 (936)
Q Consensus 94 ~g~~~~~~~Q~~ai~~~~~g~--d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~ 171 (936)
.|+.--+..|.-|+..++... =|.+.++-|||||+-++.+.+...... ....+++|.=|+..+.+++
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~------~~y~KiiVtRp~vpvG~dI----- 292 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLER------KRYRKIIVTRPTVPVGEDI----- 292 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHH------hhhceEEEecCCcCccccc-----
Confidence 577666788999999988653 255669999999999988888777653 3355788888887664332
Q ss_pred hccCCCCEEEEEeCCc---------cchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCc----------eEEEEccc
Q psy7557 172 KIDYKGLKAVCVYGGK---------EIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAV----------SFVVLDEA 232 (936)
Q Consensus 172 ~~~~~~~~~~~~~gg~---------~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~----------~~lViDEa 232 (936)
..+-|.. ...+....+.+.. =++-+.+...+.++.+.+..+ .++|||||
T Consensus 293 ---------GfLPG~eEeKm~PWmq~i~DnLE~L~~~~---~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEa 360 (436)
T COG1875 293 ---------GFLPGTEEEKMGPWMQAIFDNLEVLFSPN---EPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEA 360 (436)
T ss_pred ---------CcCCCchhhhccchHHHHHhHHHHHhccc---ccchHHHHHHHhccceeeeeeeeecccccccceEEEehh
Confidence 1111110 0011111111110 011233444444443332222 58999999
Q ss_pred hhhhcCCCHHHHHHHHhhcCCCCcEEEEE
Q psy7557 233 DRMLDLGFEPQINKTSIYINPNRQTVMTS 261 (936)
Q Consensus 233 h~l~~~~~~~~~~~i~~~~~~~~q~~~~S 261 (936)
+.+- ..++..|+....+...+|++.
T Consensus 361 QNLT----pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 361 QNLT----PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred hccC----HHHHHHHHHhccCCCEEEEcC
Confidence 9873 567888888888888877653
No 386
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.39 E-value=0.066 Score=59.92 Aligned_cols=148 Identities=22% Similarity=0.201 Sum_probs=75.7
Q ss_pred EEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHh-----c--------cCCCCEEEEEE
Q psy7557 638 GIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK-----I--------DYKGLKAVCVY 704 (936)
Q Consensus 638 ~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~-----~--------~~~~~~~~~~~ 704 (936)
..+.||||||++..-.++.... .....-|+.|..-....-...-+.. | ....+.+-.+.
T Consensus 2 f~matgsgkt~~ma~lil~~y~--------kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn 73 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYK--------KGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVN 73 (812)
T ss_pred cccccCCChhhHHHHHHHHHHH--------hchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeec
Confidence 4578999999976544444332 2233567777765543322222111 1 11111111111
Q ss_pred CCccchHHHHHHhcCceEEEeCchHHHHHHHcCC---C---CCCCceEE-EEcccchhccCC-------------CHHHH
Q psy7557 705 GGKELEPQLEKIREGCHILIATPGRLNDFVSRAS---I---DLKAVSFV-VLDEADRMLDLG-------------FEPQI 764 (936)
Q Consensus 705 gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~---~---~~~~i~~l-ViDEah~l~~~~-------------~~~~~ 764 (936)
.- .....+..|.++|.+.|...+.+.. + .+.+..+| +-||||++.... +...+
T Consensus 74 ~f-------sehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v 146 (812)
T COG3421 74 NF-------SEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVV 146 (812)
T ss_pred cc-------CccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHH
Confidence 10 0022346899999999877665432 2 34555554 559999986321 11111
Q ss_pred HHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEE
Q psy7557 765 NKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVN 803 (936)
Q Consensus 765 ~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~ 803 (936)
.+.-.-+++--++.+|||.|. -..+...|- +.+.+.
T Consensus 147 -~la~~~nkd~~~lef~at~~k-~k~v~~ky~-dkiv~~ 182 (812)
T COG3421 147 -KLALEQNKDNLLLEFSATIPK-EKSVEDKYE-DKIVVT 182 (812)
T ss_pred -HHHHhcCCCceeehhhhcCCc-cccHHHHhc-cceEEe
Confidence 122223456678899999983 334444443 444443
No 387
>PRK04296 thymidine kinase; Provisional
Probab=96.38 E-value=0.005 Score=61.51 Aligned_cols=108 Identities=19% Similarity=0.240 Sum_probs=55.5
Q ss_pred cEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCc---HHHHHHHHHHHHhccCCCCEEEEEeCCccchH
Q psy7557 115 DMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPT---RELATQIEREVNKIDYKGLKAVCVYGGKEIEP 191 (936)
Q Consensus 115 d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt---~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~ 191 (936)
=.++.||+|+|||..++--+. ... ..+.+++++-|. +....++ ..+ .++...
T Consensus 4 i~litG~~GsGKTT~~l~~~~-~~~--------~~g~~v~i~k~~~d~~~~~~~i---~~~---lg~~~~---------- 58 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAY-NYE--------ERGMKVLVFKPAIDDRYGEGKV---VSR---IGLSRE---------- 58 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHH-HHH--------HcCCeEEEEeccccccccCCcE---ecC---CCCccc----------
Confidence 357889999999976544333 222 246678888663 2221111 111 111110
Q ss_pred HHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHHHhhcCCCCcEEEEEec
Q psy7557 192 QLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSAT 263 (936)
Q Consensus 192 ~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT 263 (936)
.+.+..+..+.+.+.. .-.+.++|||||+|.+. ..++..+...+.+.-..+.+++-
T Consensus 59 ---------~~~~~~~~~~~~~~~~---~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 59 ---------AIPVSSDTDIFELIEE---EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred ---------ceEeCChHHHHHHHHh---hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEec
Confidence 0112333444444433 23568899999998642 23455555554444444555543
No 388
>PRK06526 transposase; Provisional
Probab=96.38 E-value=0.017 Score=60.22 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=18.1
Q ss_pred HhcCCcEEEEecCCCCcchhch
Q psy7557 110 LMSGHDMIGIAQTGTGKTFAFL 131 (936)
Q Consensus 110 ~~~g~d~l~~apTGsGKT~~~~ 131 (936)
+..+++++++||+|+|||..+.
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~ 116 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAI 116 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHH
Confidence 3457899999999999998654
No 389
>KOG1805|consensus
Probab=96.36 E-value=0.012 Score=69.33 Aligned_cols=134 Identities=22% Similarity=0.284 Sum_probs=85.1
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCc-EEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHH
Q psy7557 83 HYPEILRQLENLSFTTPSPIQAQAWPILMSGHD-MIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRE 161 (936)
Q Consensus 83 ~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d-~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~ 161 (936)
+.|.+.+. -+..++..|++|+-.++..+| .++.|=.|+|||.... .+..++. ..|.++|..+-|-.
T Consensus 658 ~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~--~LIkiL~-------~~gkkVLLtsyThs 724 (1100)
T KOG1805|consen 658 LIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTIS--LLIKILV-------ALGKKVLLTSYTHS 724 (1100)
T ss_pred cCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHH--HHHHHHH-------HcCCeEEEEehhhH
Confidence 44554443 235789999999999998776 6777999999998532 3333332 34788999999988
Q ss_pred HHHHHHHHHHhccCCCCEEEEEeCCccchHH-----------------HHHhhcCCcEEEeCCchhHHHHHcCCcCCCCc
Q psy7557 162 LATQIEREVNKIDYKGLKAVCVYGGKEIEPQ-----------------LEKIREGCHILIATPGRLNDFVSRASIDLKAV 224 (936)
Q Consensus 162 La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~-----------------~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 224 (936)
-+..+.-.++.+ ++....+-.+....++ .....+.+.||.+|-=-+.+-+ +..+.+
T Consensus 725 AVDNILiKL~~~---~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl----f~~R~F 797 (1100)
T KOG1805|consen 725 AVDNILIKLKGF---GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL----FVNRQF 797 (1100)
T ss_pred HHHHHHHHHhcc---CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh----hhcccc
Confidence 766666666654 3332222112222222 2233345788888854444333 234568
Q ss_pred eEEEEccchhhh
Q psy7557 225 SFVVLDEADRML 236 (936)
Q Consensus 225 ~~lViDEah~l~ 236 (936)
++.|||||-.++
T Consensus 798 D~cIiDEASQI~ 809 (1100)
T KOG1805|consen 798 DYCIIDEASQIL 809 (1100)
T ss_pred CEEEEccccccc
Confidence 999999998764
No 390
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.34 E-value=0.027 Score=52.40 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=12.4
Q ss_pred CCcEEEEecCCCCcchhc
Q psy7557 113 GHDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 113 g~d~l~~apTGsGKT~~~ 130 (936)
++-+++.||+|+|||...
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 456889999999999864
No 391
>KOG1015|consensus
Probab=96.30 E-value=0.0077 Score=70.09 Aligned_cols=119 Identities=19% Similarity=0.195 Sum_probs=97.6
Q ss_pred hhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhh----------------------cCCceeeecCCCCHHHHHH
Q psy7557 306 EKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLAC----------------------QYRKSCSLYGDLSQEDREI 363 (936)
Q Consensus 306 ~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~----------------------~~~~~~~~h~~~~~~~R~~ 363 (936)
.|.-.|+++|.....-+.++|||..+....+-+-.+|.. .|....-+.|.....+|..
T Consensus 1126 gKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k 1205 (1567)
T KOG1015|consen 1126 GKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKK 1205 (1567)
T ss_pred cceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHH
Confidence 455567788877767789999999999988888777753 1233445778999999999
Q ss_pred HHHHhhcCC----cEEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCceeEEE
Q psy7557 364 ALEDITSGY----ARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESIT 424 (936)
Q Consensus 364 ~~~~f~~g~----~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~ 424 (936)
..+.|.+-. .-.||+|-+.+-|||+-+.+-||.||..+++.--.|-+=|+=|.|+.--+++
T Consensus 1206 ~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyi 1270 (1567)
T KOG1015|consen 1206 WAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYI 1270 (1567)
T ss_pred HHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceee
Confidence 999997532 2378999999999999999999999999999999999999999998755543
No 392
>PRK06526 transposase; Provisional
Probab=96.28 E-value=0.018 Score=60.02 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=17.9
Q ss_pred hhcCCcEEEEecCCCCcchhhH
Q psy7557 630 LMSGHDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 630 ~l~g~d~i~~apTGsGKTl~~~ 651 (936)
+-.+.+++++||+|+|||..+.
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~ 116 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAI 116 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHH
Confidence 3357899999999999997544
No 393
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.25 E-value=0.0094 Score=65.11 Aligned_cols=68 Identities=16% Similarity=0.126 Sum_probs=49.7
Q ss_pred CcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc
Q psy7557 619 PSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693 (936)
Q Consensus 619 p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 693 (936)
+|+-|.+++.. ...++++.|..|||||.+.+--+...+.... .+..++|++++|+..|..+.+++...
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-----~~~~~Il~lTft~~aa~e~~~ri~~~ 68 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-----VPPERILVLTFTNAAAQEMRERIREL 68 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-----STGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-----CChHHheecccCHHHHHHHHHHHHHh
Confidence 47889999988 6789999999999999875544333332211 23457999999999999999998874
No 394
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.20 E-value=0.0068 Score=56.47 Aligned_cols=19 Identities=21% Similarity=0.207 Sum_probs=12.8
Q ss_pred CCcEEEEecCCCCcchhhH
Q psy7557 633 GHDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 633 g~d~i~~apTGsGKTl~~~ 651 (936)
++-+++.||+|+|||....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ---EEEEE-TTSSHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHH
Confidence 4678999999999997543
No 395
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.19 E-value=0.28 Score=65.80 Aligned_cols=238 Identities=15% Similarity=0.140 Sum_probs=127.0
Q ss_pred CCcHHHHHHHHHHhcC--CcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhccC
Q psy7557 98 TPSPIQAQAWPILMSG--HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDY 175 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~~g--~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 175 (936)
.+++-|.+|+..++.. +=.++.++.|+|||.+ +-.+..+.. ..|..++.++||-.-|..+.+.....
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~--l~~l~~~~~-------~~G~~V~~lAPTgrAA~~L~e~~g~~-- 497 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI--AQLLLHLAS-------EQGYEIQIITAGSLSAQELRQKIPRL-- 497 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH--HHHHHHHHH-------hcCCeEEEEeCCHHHHHHHHHHhcch--
Confidence 6899999999998865 4467779999999975 223333322 34778999999987766655543210
Q ss_pred CCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHHHhhc-CCC
Q psy7557 176 KGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYI-NPN 254 (936)
Q Consensus 176 ~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~-~~~ 254 (936)
. .........+..+ .-..|...+ + .....+..-++||||||-.+. ...+..++... +.+
T Consensus 498 ----A------~Ti~~~l~~l~~~--~~~~tv~~f---l-~~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~~g 557 (1960)
T TIGR02760 498 ----A------STFITWVKNLFND--DQDHTVQGL---L-DKSSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQHN 557 (1960)
T ss_pred ----h------hhHHHHHHhhccc--ccchhHHHh---h-cccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhhcC
Confidence 0 0011111111110 111122222 2 222335677899999999664 34455555544 467
Q ss_pred CcEEEEEec--cc----hHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhccCCCCcEEEE
Q psy7557 255 RQTVMTSAT--WN----KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVF 328 (936)
Q Consensus 255 ~q~~~~SAT--~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF 328 (936)
.++|++.=+ +| .++..++.........+ .... .....+ .+...+...+...+.+.+..+......++|+
T Consensus 558 arvVlvGD~~QL~sV~aG~~f~~L~~~gv~t~~l--~~i~-rq~~~v--~i~~~~~~~r~~~ia~~y~~L~~~r~~tliv 632 (1960)
T TIGR02760 558 SKLILLNDSAQRQGMSAGSAIDLLKEGGVTTYAW--VDTK-QQKASV--EISEAVDKLRVDYIASAWLDLTPDRQNSQVL 632 (1960)
T ss_pred CEEEEEcChhhcCccccchHHHHHHHCCCcEEEe--eccc-ccCcce--eeeccCchHHHHHHHHHHHhcccccCceEEE
Confidence 787776644 22 23444444432111111 1110 001111 1222223344445555555544455679999
Q ss_pred eCchHHHHHHHHHhhhc----CC------ceeeec-CCCCHHHHHHHHHHhhcCC
Q psy7557 329 MGRKASVSAMSSDLACQ----YR------KSCSLY-GDLSQEDREIALEDITSGY 372 (936)
Q Consensus 329 ~~~~~~~~~l~~~L~~~----~~------~~~~~h-~~~~~~~R~~~~~~f~~g~ 372 (936)
..+..+...|....+.. |. ....+. ..|+..++... ..|+.|.
T Consensus 633 ~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~Gd 686 (1960)
T TIGR02760 633 ATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQGM 686 (1960)
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCCC
Confidence 99988877777666532 21 111222 36777777744 6666655
No 396
>PRK08181 transposase; Validated
Probab=96.15 E-value=0.066 Score=56.24 Aligned_cols=58 Identities=22% Similarity=0.251 Sum_probs=33.6
Q ss_pred cHHHHHHHHh----hhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHH
Q psy7557 620 SPIQAQAWPI----LMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIE 687 (936)
Q Consensus 620 ~~iQ~~ai~~----~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~ 687 (936)
.+.|..++.. +-.++++++.||+|+|||..+.. +...+. ..|..++|+ +..+|..++.
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~A-ia~~a~--------~~g~~v~f~-~~~~L~~~l~ 150 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAA-IGLALI--------ENGWRVLFT-RTTDLVQKLQ 150 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHH-HHHHHH--------HcCCceeee-eHHHHHHHHH
Confidence 4455554422 33678999999999999954332 112221 235556555 4566765553
No 397
>PRK08181 transposase; Validated
Probab=96.13 E-value=0.033 Score=58.49 Aligned_cols=58 Identities=22% Similarity=0.251 Sum_probs=33.4
Q ss_pred cHHHHHHHHH----HhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHH
Q psy7557 100 SPIQAQAWPI----LMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIE 167 (936)
Q Consensus 100 ~~~Q~~ai~~----~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~ 167 (936)
.+.|..++.. +-.+++++++||+|+|||..+.. +...+. ..|..++++ +..+|..++.
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~A-ia~~a~--------~~g~~v~f~-~~~~L~~~l~ 150 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAA-IGLALI--------ENGWRVLFT-RTTDLVQKLQ 150 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHH-HHHHHH--------HcCCceeee-eHHHHHHHHH
Confidence 4555555532 33678999999999999964332 222222 224445444 4566665553
No 398
>PRK14974 cell division protein FtsY; Provisional
Probab=96.06 E-value=0.044 Score=59.38 Aligned_cols=55 Identities=20% Similarity=0.320 Sum_probs=40.5
Q ss_pred CCceEEEEcccchhc-cCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhc
Q psy7557 742 KAVSFVVLDEADRML-DLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYM 796 (936)
Q Consensus 742 ~~i~~lViDEah~l~-~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~ 796 (936)
...++|+||.+.++. +......+..+.....|+.-++.++||...+....+..|.
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFN 276 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHH
Confidence 345799999999875 3345566677777777888889999998777666666654
No 399
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.06 E-value=0.0091 Score=66.29 Aligned_cols=60 Identities=30% Similarity=0.379 Sum_probs=44.9
Q ss_pred CCcHHHHHHHHHH------hcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHH
Q psy7557 98 TPSPIQAQAWPIL------MSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQI 166 (936)
Q Consensus 98 ~~~~~Q~~ai~~~------~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~ 166 (936)
++++-|..++..+ ..+.++++.||-|+|||.. +-.+..... ..+..+++++||-.-|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l--~~~i~~~~~-------~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL--IKAIIDYLR-------SRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH--HHHHHHHhc-------cccceEEEecchHHHHHhc
Confidence 3678899998888 6788999999999999974 334433332 3467899999997766554
No 400
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.06 E-value=0.04 Score=52.08 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.5
Q ss_pred CCcEEEEecCCCCcchhh
Q psy7557 633 GHDMIGIAQTGTGKTFAF 650 (936)
Q Consensus 633 g~d~i~~apTGsGKTl~~ 650 (936)
++.+++.||+|+|||...
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 678999999999999643
No 401
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.03 E-value=0.025 Score=53.10 Aligned_cols=50 Identities=28% Similarity=0.300 Sum_probs=39.1
Q ss_pred ecCCCCHHHHHHHHHHhhcCC-cEEEEEecccccCCCCCC--CcEEEEecCCC
Q psy7557 352 LYGDLSQEDREIALEDITSGY-ARICVATDVASRGLDVPD--LTHVINYDFPS 401 (936)
Q Consensus 352 ~h~~~~~~~R~~~~~~f~~g~-~~vLvaT~~~~~GiDip~--v~~VI~~d~p~ 401 (936)
+.-+....+...+++.|+... ..||++|.-+++|||+|+ +++||...+|.
T Consensus 27 ~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 27 LVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred EEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 444455656788999998754 379999988999999998 46788888873
No 402
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=95.98 E-value=0.073 Score=66.13 Aligned_cols=133 Identities=19% Similarity=0.129 Sum_probs=76.5
Q ss_pred HHHHHHhCCCCCCcHHHHHHHHHHhc-CCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHH
Q psy7557 87 ILRQLENLSFTTPSPIQAQAWPILMS-GHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQ 165 (936)
Q Consensus 87 l~~~l~~~g~~~~~~~Q~~ai~~~~~-g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q 165 (936)
.+......++ .+++-|.+|+..+.. ++=.++.|+-|+|||.+. -++. .... ..|..++.++||-.-|..
T Consensus 371 ~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~-~~~e-------~~G~~V~g~ApTgkAA~~ 440 (1102)
T PRK13826 371 VLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAAR-EAWE-------AAGYRVVGGALAGKAAEG 440 (1102)
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHH-HHHH-------HcCCeEEEEcCcHHHHHH
Confidence 3333333344 799999999998865 445777899999999752 2333 3221 347789999999776655
Q ss_pred HHHHHHhccCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHH
Q psy7557 166 IEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQIN 245 (936)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~ 245 (936)
+.+.. |+....+ .+|......+...+..-++||||||-.+. ..++.
T Consensus 441 L~e~~------Gi~a~TI------------------------as~ll~~~~~~~~l~~~~vlVIDEAsMv~----~~~m~ 486 (1102)
T PRK13826 441 LEKEA------GIQSRTL------------------------SSWELRWNQGRDQLDNKTVFVLDEAGMVA----SRQMA 486 (1102)
T ss_pred HHHhh------CCCeeeH------------------------HHHHhhhccCccCCCCCcEEEEECcccCC----HHHHH
Confidence 43321 2221111 11100001112235667899999999653 33444
Q ss_pred HHHhhcC-CCCcEEEEEec
Q psy7557 246 KTSIYIN-PNRQTVMTSAT 263 (936)
Q Consensus 246 ~i~~~~~-~~~q~~~~SAT 263 (936)
.++.... ...++|++.=+
T Consensus 487 ~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 487 LFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHHhcCCEEEEECCH
Confidence 4554443 45666665543
No 403
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.94 E-value=0.022 Score=63.27 Aligned_cols=60 Identities=30% Similarity=0.379 Sum_probs=44.7
Q ss_pred CCcHHHHHHHHhh------hcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHH
Q psy7557 618 TPSPIQAQAWPIL------MSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQI 686 (936)
Q Consensus 618 ~p~~iQ~~ai~~~------l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~ 686 (936)
.+++-|..++..+ ..+.++++.++-|+|||.. +-.+..... ..+..+++++||-.-|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l--~~~i~~~~~-------~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL--IKAIIDYLR-------SRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH--HHHHHHHhc-------cccceEEEecchHHHHHhc
Confidence 3678899998888 5788999999999999964 334433322 3467899999997766554
No 404
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.93 E-value=0.051 Score=51.33 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.5
Q ss_pred CCcEEEEecCCCCcchhc
Q psy7557 113 GHDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 113 g~d~l~~apTGsGKT~~~ 130 (936)
++.+++.||+|+|||...
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 678999999999999743
No 405
>KOG1805|consensus
Probab=95.90 E-value=0.027 Score=66.51 Aligned_cols=135 Identities=21% Similarity=0.269 Sum_probs=83.0
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCc-EEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHH
Q psy7557 603 HYPEILRQLENLSFTTPSPIQAQAWPILMSGHD-MIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRE 681 (936)
Q Consensus 603 l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d-~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~ 681 (936)
+.|.+.+. -+..++.-|.+|+-.++..+| .++.+=+|+|||..-. .+..++. ..|++||..+-|..
T Consensus 658 ~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~--~LIkiL~-------~~gkkVLLtsyThs 724 (1100)
T KOG1805|consen 658 LIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTIS--LLIKILV-------ALGKKVLLTSYTHS 724 (1100)
T ss_pred cCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHH--HHHHHHH-------HcCCeEEEEehhhH
Confidence 44544443 345788999999999987765 6777899999997533 2222322 34789999999988
Q ss_pred HHHHHHHHHHhccCCCCEEEEEECCccchHH-----------------HHHHhcCceEEEeCchHHHHHHHcCCCCCCCc
Q psy7557 682 LATQIEREVNKIDYKGLKAVCVYGGKELEPQ-----------------LEKIREGCHILIATPGRLNDFVSRASIDLKAV 744 (936)
Q Consensus 682 La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~-----------------~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i 744 (936)
-+..+.-.++.+ ++.+..+-.+....++ ....-+.+.||.+|---+.+.+ +..+.+
T Consensus 725 AVDNILiKL~~~---~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl----f~~R~F 797 (1100)
T KOG1805|consen 725 AVDNILIKLKGF---GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL----FVNRQF 797 (1100)
T ss_pred HHHHHHHHHhcc---CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh----hhcccc
Confidence 866666666654 2222222111111111 1122234678888854443322 234668
Q ss_pred eEEEEcccchhcc
Q psy7557 745 SFVVLDEADRMLD 757 (936)
Q Consensus 745 ~~lViDEah~l~~ 757 (936)
++.|||||-.+..
T Consensus 798 D~cIiDEASQI~l 810 (1100)
T KOG1805|consen 798 DYCIIDEASQILL 810 (1100)
T ss_pred CEEEEcccccccc
Confidence 9999999987653
No 406
>PRK04296 thymidine kinase; Provisional
Probab=95.75 E-value=0.047 Score=54.53 Aligned_cols=36 Identities=25% Similarity=0.239 Sum_probs=24.1
Q ss_pred CcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEec
Q psy7557 634 HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAP 678 (936)
Q Consensus 634 ~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~P 678 (936)
.=.++.+|.|+|||...+--+.... ..+.+++++-|
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~---------~~g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE---------ERGMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH---------HcCCeEEEEec
Confidence 3467889999999976543333222 34678888877
No 407
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.65 E-value=0.017 Score=54.30 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=15.9
Q ss_pred CCcEEEEecCCCCcchhhH
Q psy7557 633 GHDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 633 g~d~i~~apTGsGKTl~~~ 651 (936)
+..+++.+|+|+|||....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 2 GEVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CCEEEEECCCCCcHHHHHH
Confidence 5678999999999997543
No 408
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=95.63 E-value=0.032 Score=52.46 Aligned_cols=43 Identities=28% Similarity=0.367 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhcCCc---EEEEEecc--cccCCCCCC--CcEEEEecCCC
Q psy7557 359 EDREIALEDITSGYA---RICVATDV--ASRGLDVPD--LTHVINYDFPS 401 (936)
Q Consensus 359 ~~R~~~~~~f~~g~~---~vLvaT~~--~~~GiDip~--v~~VI~~d~p~ 401 (936)
.+...+++.|++..- .||+|+.- +++|||+|+ +++||..++|-
T Consensus 31 ~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 31 GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 345678888887543 69998877 999999998 57899888873
No 409
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.58 E-value=0.83 Score=61.52 Aligned_cols=238 Identities=15% Similarity=0.124 Sum_probs=127.0
Q ss_pred CCcHHHHHHHHhhhcC--CcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhccC
Q psy7557 618 TPSPIQAQAWPILMSG--HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDY 695 (936)
Q Consensus 618 ~p~~iQ~~ai~~~l~g--~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 695 (936)
.+++-|.+|+..++.. +=.++.++.|+|||.+.- .++ .+.. ..|..++.++||-.-|.++.+....
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~-~l~-~~~~-------~~G~~V~~lAPTgrAA~~L~e~~g~--- 496 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQ-LLL-HLAS-------EQGYEIQIITAGSLSAQELRQKIPR--- 496 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHH-HHH-HHHH-------hcCCeEEEEeCCHHHHHHHHHHhcc---
Confidence 6899999999998865 457888999999997522 222 2221 3478999999998766655544321
Q ss_pred CCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHHHhhhc-CCC
Q psy7557 696 KGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYI-NPN 774 (936)
Q Consensus 696 ~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~-~~~ 774 (936)
... ........+.. ..-..|...+ + .....+..-++||||||-.+.. ..+..++... +.+
T Consensus 497 ---~A~------Ti~~~l~~l~~--~~~~~tv~~f---l-~~~~~l~~~~vlIVDEAsMl~~----~~~~~Ll~~a~~~g 557 (1960)
T TIGR02760 497 ---LAS------TFITWVKNLFN--DDQDHTVQGL---L-DKSSPFSNKDIFVVDEANKLSN----NELLKLIDKAEQHN 557 (1960)
T ss_pred ---hhh------hHHHHHHhhcc--cccchhHHHh---h-cccCCCCCCCEEEEECCCCCCH----HHHHHHHHHHhhcC
Confidence 100 00001111111 1111222222 2 2223356778999999996532 3445555444 467
Q ss_pred ceEEEEEec--C----ChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHHHHhccCCCCcEEEE
Q psy7557 775 RQTVMTSAT--W----NKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVF 848 (936)
Q Consensus 775 ~q~v~~SAT--~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF 848 (936)
.++|++-=+ + +.++..++......-..+. ... .....+ .+.......+...+...+.........++|+
T Consensus 558 arvVlvGD~~QL~sV~aG~~f~~L~~~gv~t~~l~-~i~--rq~~~v--~i~~~~~~~r~~~ia~~y~~L~~~r~~tliv 632 (1960)
T TIGR02760 558 SKLILLNDSAQRQGMSAGSAIDLLKEGGVTTYAWV-DTK--QQKASV--EISEAVDKLRVDYIASAWLDLTPDRQNSQVL 632 (1960)
T ss_pred CEEEEEcChhhcCccccchHHHHHHHCCCcEEEee-ccc--ccCcce--eeeccCchHHHHHHHHHHHhcccccCceEEE
Confidence 888877554 2 2244444444322211111 110 111111 1122223334444555555544455579999
Q ss_pred cCChHHHHHHHHHHHhc----CC------ceEEEe-CCCCHHHHHHHHHHhhcCC
Q psy7557 849 MGRKASVSAMSSDLACQ----YR------KSCSLY-GDLSQEDREIALEDITSGY 892 (936)
Q Consensus 849 ~~s~~~~~~l~~~L~~~----~~------~~~~~h-~~l~~~~R~~~~~~F~~g~ 892 (936)
..+......|....+.. |. ....+. ..|+..++... ..|+.|.
T Consensus 633 ~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~Gd 686 (1960)
T TIGR02760 633 ATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQGM 686 (1960)
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCCC
Confidence 99988888887776532 21 111222 36777777744 6666653
No 410
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.55 E-value=0.015 Score=54.53 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=15.9
Q ss_pred CCcEEEEecCCCCcchhch
Q psy7557 113 GHDMIGIAQTGTGKTFAFL 131 (936)
Q Consensus 113 g~d~l~~apTGsGKT~~~~ 131 (936)
++.++++||+|+|||....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 2 GEVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CCEEEEECCCCCcHHHHHH
Confidence 4678999999999998643
No 411
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=95.54 E-value=0.16 Score=63.25 Aligned_cols=135 Identities=19% Similarity=0.113 Sum_probs=78.6
Q ss_pred HHHHHHHHhCCCCCCcHHHHHHHHhhhc-CCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHH
Q psy7557 605 PEILRQLENLSFTTPSPIQAQAWPILMS-GHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELA 683 (936)
Q Consensus 605 ~~~~~~l~~~g~~~p~~iQ~~ai~~~l~-g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La 683 (936)
+..+......++ .+++-|.+|+..+.. ++-.++.++-|+|||.+.- ++...+. ..|.+++.++||---|
T Consensus 369 ~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~-~~~~~~e--------~~G~~V~g~ApTgkAA 438 (1102)
T PRK13826 369 EAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMK-AAREAWE--------AAGYRVVGGALAGKAA 438 (1102)
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHH-HHHHHHH--------HcCCeEEEEcCcHHHH
Confidence 334444434455 799999999998864 4567888999999997532 3333221 3477899999997665
Q ss_pred HHHHHHHHhccCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHH
Q psy7557 684 TQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQ 763 (936)
Q Consensus 684 ~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~ 763 (936)
..+.+. .|+... |-.+|......+...+..-++||||||-.+.. ..
T Consensus 439 ~~L~e~------~Gi~a~------------------------TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~~----~~ 484 (1102)
T PRK13826 439 EGLEKE------AGIQSR------------------------TLSSWELRWNQGRDQLDNKTVFVLDEAGMVAS----RQ 484 (1102)
T ss_pred HHHHHh------hCCCee------------------------eHHHHHhhhccCccCCCCCcEEEEECcccCCH----HH
Confidence 544322 122211 11111100111223456677999999996532 34
Q ss_pred HHHHhhhcC-CCceEEEEEec
Q psy7557 764 INKTSIYIN-PNRQTVMTSAT 783 (936)
Q Consensus 764 ~~~i~~~~~-~~~q~v~~SAT 783 (936)
+..++.... .+.++|++.=+
T Consensus 485 m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 485 MALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHHHHhcCCEEEEECCH
Confidence 444444443 56677766544
No 412
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.49 E-value=0.078 Score=51.28 Aligned_cols=38 Identities=29% Similarity=0.359 Sum_probs=23.5
Q ss_pred EEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHH
Q psy7557 116 MIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTREL 162 (936)
Q Consensus 116 ~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~L 162 (936)
++++||+|+|||.....-+. ... ..+..++++.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~-~~~--------~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLAL-NIA--------TKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHH-HHH--------hcCCEEEEEECCcch
Confidence 57899999999986443222 221 235567777665443
No 413
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.32 E-value=0.14 Score=53.00 Aligned_cols=107 Identities=20% Similarity=0.232 Sum_probs=56.2
Q ss_pred CcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhccCCCCEEEEEECCccchHHH
Q psy7557 634 HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQL 713 (936)
Q Consensus 634 ~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 713 (936)
..+++.+++|+|||..+. .+...+. ..+..++++ +..+|...+...+.. .+
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l~--------~~g~~v~~i-t~~~l~~~l~~~~~~------------~~------- 150 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNELL--------LRGKSVLII-TVADIMSAMKDTFSN------------SE------- 150 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHH--------hcCCeEEEE-EHHHHHHHHHHHHhh------------cc-------
Confidence 479999999999996433 2233332 235566665 445554433332210 00
Q ss_pred HHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHH-HHHHHhhh-cCCCceEEEEEecCChH
Q psy7557 714 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEP-QINKTSIY-INPNRQTVMTSATWNKD 787 (936)
Q Consensus 714 ~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~-~~~~i~~~-~~~~~q~v~~SAT~~~~ 787 (936)
.+.+.+.+. +..+++|||||++......+.. .+..|... ......+++.|---+..
T Consensus 151 -----------~~~~~~l~~-------l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~ 208 (244)
T PRK07952 151 -----------TSEEQLLND-------LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEE 208 (244)
T ss_pred -----------ccHHHHHHH-------hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHH
Confidence 122222221 4568899999999865443443 22333332 23356666666544333
No 414
>PRK12377 putative replication protein; Provisional
Probab=95.29 E-value=0.13 Score=53.47 Aligned_cols=48 Identities=17% Similarity=0.205 Sum_probs=28.6
Q ss_pred CCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHH
Q psy7557 633 GHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREV 690 (936)
Q Consensus 633 g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~ 690 (936)
..++++.||+|+|||..+. ++...+. ..+..+++ ++..+|..++...+
T Consensus 101 ~~~l~l~G~~GtGKThLa~-AIa~~l~--------~~g~~v~~-i~~~~l~~~l~~~~ 148 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAA-AIGNRLL--------AKGRSVIV-VTVPDVMSRLHESY 148 (248)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHH--------HcCCCeEE-EEHHHHHHHHHHHH
Confidence 3689999999999996433 2222332 12444544 45667766655443
No 415
>PRK08116 hypothetical protein; Validated
Probab=95.24 E-value=0.22 Score=52.67 Aligned_cols=47 Identities=19% Similarity=0.170 Sum_probs=27.5
Q ss_pred CcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q psy7557 114 HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREV 170 (936)
Q Consensus 114 ~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~ 170 (936)
..+++.|++|+|||..+. ++...+.. .+..+++ .+..+|..++...+
T Consensus 115 ~gl~l~G~~GtGKThLa~-aia~~l~~--------~~~~v~~-~~~~~ll~~i~~~~ 161 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAA-CIANELIE--------KGVPVIF-VNFPQLLNRIKSTY 161 (268)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHH--------cCCeEEE-EEHHHHHHHHHHHH
Confidence 349999999999998543 23343322 2334444 44566655554443
No 416
>PRK08727 hypothetical protein; Validated
Probab=95.19 E-value=0.06 Score=55.71 Aligned_cols=16 Identities=31% Similarity=0.254 Sum_probs=13.6
Q ss_pred CcEEEEecCCCCcchh
Q psy7557 114 HDMIGIAQTGTGKTFA 129 (936)
Q Consensus 114 ~d~l~~apTGsGKT~~ 129 (936)
..++++||+|+|||-.
T Consensus 42 ~~l~l~G~~G~GKThL 57 (233)
T PRK08727 42 DWLYLSGPAGTGKTHL 57 (233)
T ss_pred CeEEEECCCCCCHHHH
Confidence 3489999999999964
No 417
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.18 E-value=0.17 Score=55.31 Aligned_cols=129 Identities=18% Similarity=0.232 Sum_probs=64.4
Q ss_pred CcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEE-EEcCc-HH-HHHHHHHHHHhccCCCCEEEEEeCCccch
Q psy7557 114 HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVL-VMAPT-RE-LATQIEREVNKIDYKGLKAVCVYGGKEIE 190 (936)
Q Consensus 114 ~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~l-il~Pt-~~-La~Q~~~~~~~~~~~~~~~~~~~gg~~~~ 190 (936)
+.+.++||||+|||.....-+.. +. ..+.++. +-+-+ |. -+.|+...... .++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~-L~--------~~GkkVglI~aDt~RiaAvEQLk~yae~---lgipv---------- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQ-FH--------GKKKTVGFITTDHSRIGTVQQLQDYVKT---IGFEV---------- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHH-HH--------HcCCcEEEEecCCcchHHHHHHHHHhhh---cCCcE----------
Confidence 46788999999999865443322 21 2233444 33423 32 23333322221 12222
Q ss_pred HHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCC-CHHHHHHHHhhcCCCCcEEEEEeccc-hHH
Q psy7557 191 PQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLG-FEPQINKTSIYINPNRQTVMTSATWN-KDV 268 (936)
Q Consensus 191 ~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~-~~~~~~~i~~~~~~~~q~~~~SAT~~-~~~ 268 (936)
+++.+|..+.+.+..-. ...+.++++||-+=+..... ....+..++....+..-++.+|||.. .+.
T Consensus 300 -----------~v~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~ 367 (436)
T PRK11889 300 -----------IAVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDM 367 (436)
T ss_pred -----------EecCCHHHHHHHHHHHH-hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHH
Confidence 11335555555443211 01247888888886644221 22333444444445545667898765 455
Q ss_pred HHHHHHhc
Q psy7557 269 QRVAKKYM 276 (936)
Q Consensus 269 ~~~~~~~~ 276 (936)
...++.|-
T Consensus 368 ~~i~~~F~ 375 (436)
T PRK11889 368 IEIITNFK 375 (436)
T ss_pred HHHHHHhc
Confidence 66666654
No 418
>PRK06893 DNA replication initiation factor; Validated
Probab=95.15 E-value=0.043 Score=56.62 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=28.9
Q ss_pred CCCceEEEEccchhhhcC-CCHHHHHHHHhhcC-CCCcEEEEEeccchH
Q psy7557 221 LKAVSFVVLDEADRMLDL-GFEPQINKTSIYIN-PNRQTVMTSATWNKD 267 (936)
Q Consensus 221 ~~~~~~lViDEah~l~~~-~~~~~~~~i~~~~~-~~~q~~~~SAT~~~~ 267 (936)
+.+.++|||||+|.+... .....+..++.... .+.+++++|++.++.
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 346789999999987532 22333444444433 345677888876554
No 419
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.06 E-value=0.25 Score=53.96 Aligned_cols=129 Identities=17% Similarity=0.208 Sum_probs=66.5
Q ss_pred CCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEE-ecC-HH-HHHHHHHHHHhccCCCCEEEEEECCccc
Q psy7557 633 GHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVM-APT-RE-LATQIEREVNKIDYKGLKAVCVYGGKEL 709 (936)
Q Consensus 633 g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil-~Pt-~~-La~Q~~~~~~~~~~~~~~~~~~~gg~~~ 709 (936)
.+.+.+++|||+|||.....-+.. +. ..+.++.++ +-+ |. .+.|+...... .+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~-L~--------~~GkkVglI~aDt~RiaAvEQLk~yae~---lg------------ 296 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQ-FH--------GKKKTVGFITTDHSRIGTVQQLQDYVKT---IG------------ 296 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH-HH--------HcCCcEEEEecCCcchHHHHHHHHHhhh---cC------------
Confidence 367899999999999864432222 21 234444444 323 32 22333322211 11
Q ss_pred hHHHHHHhcCceEE-EeCchHHHHHHHcCCCCCCCceEEEEcccchhccCC-CHHHHHHHhhhcCCCceEEEEEecCC-h
Q psy7557 710 EPQLEKIREGCHIL-IATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLG-FEPQINKTSIYINPNRQTVMTSATWN-K 786 (936)
Q Consensus 710 ~~~~~~l~~~~~Ii-V~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~-~~~~~~~i~~~~~~~~q~v~~SAT~~-~ 786 (936)
+.++ +.+|..+.+.+..... -.+.++|+||-+=+..... .-..+..+.....+..-++.+|||.. .
T Consensus 297 ----------ipv~v~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~ 365 (436)
T PRK11889 297 ----------FEVIAVRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK 365 (436)
T ss_pred ----------CcEEecCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChH
Confidence 2222 3466666665543210 1247899999887644221 12223333333445555677898764 4
Q ss_pred HHHHHHHHhc
Q psy7557 787 DVQRVAKKYM 796 (936)
Q Consensus 787 ~~~~~~~~~~ 796 (936)
+....+..|-
T Consensus 366 d~~~i~~~F~ 375 (436)
T PRK11889 366 DMIEIITNFK 375 (436)
T ss_pred HHHHHHHHhc
Confidence 5566776664
No 420
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.01 E-value=0.12 Score=50.00 Aligned_cols=38 Identities=29% Similarity=0.323 Sum_probs=23.8
Q ss_pred EEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHH
Q psy7557 636 MIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTREL 682 (936)
Q Consensus 636 ~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~L 682 (936)
+++.||+|+|||.....-+.... ..+..++++.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~---------~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA---------TKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH---------hcCCEEEEEECCcch
Confidence 57899999999975443222111 235677777665444
No 421
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.00 E-value=0.27 Score=50.88 Aligned_cols=47 Identities=23% Similarity=0.258 Sum_probs=27.3
Q ss_pred CCCceEEEEccchhhhcCCCHH-HHHHHHhhc-CCCCcEEEEEeccchH
Q psy7557 221 LKAVSFVVLDEADRMLDLGFEP-QINKTSIYI-NPNRQTVMTSATWNKD 267 (936)
Q Consensus 221 ~~~~~~lViDEah~l~~~~~~~-~~~~i~~~~-~~~~q~~~~SAT~~~~ 267 (936)
+.++++|||||++......+.. .+..|+... .....+++.|---+..
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~ 208 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEE 208 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHH
Confidence 4578899999999765443433 333444432 3345666666543333
No 422
>PRK12377 putative replication protein; Provisional
Probab=94.88 E-value=0.18 Score=52.27 Aligned_cols=47 Identities=15% Similarity=0.203 Sum_probs=28.1
Q ss_pred CcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q psy7557 114 HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREV 170 (936)
Q Consensus 114 ~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~ 170 (936)
.++++.||+|+|||..+.. +...+. ..+..+ +.++..+|..++...+
T Consensus 102 ~~l~l~G~~GtGKThLa~A-Ia~~l~--------~~g~~v-~~i~~~~l~~~l~~~~ 148 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAA-IGNRLL--------AKGRSV-IVVTVPDVMSRLHESY 148 (248)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHH--------HcCCCe-EEEEHHHHHHHHHHHH
Confidence 5799999999999975332 333332 123344 4445567766654443
No 423
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=94.87 E-value=0.099 Score=49.09 Aligned_cols=51 Identities=25% Similarity=0.237 Sum_probs=39.8
Q ss_pred EEEeCCCCHHHHHHHHHHhhcCC-CcEEEecccCccCCCCCCC--CEEEEccCC
Q psy7557 870 CSLYGDLSQEDREIALEDITSGY-ARICVATDVASRGLDVPDL--THVINYDFP 920 (936)
Q Consensus 870 ~~~h~~l~~~~R~~~~~~F~~g~-~~vLVaT~~~~~Gidip~v--~~VI~~d~p 920 (936)
..+.-+.+..+...+++.|++.. ..||++|.-+++|+|+|+- +.||...+|
T Consensus 25 ~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glP 78 (141)
T smart00492 25 LLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLP 78 (141)
T ss_pred eEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecC
Confidence 34555566667788999998754 3799999889999999984 578888877
No 424
>KOG0989|consensus
Probab=94.83 E-value=0.076 Score=54.99 Aligned_cols=45 Identities=13% Similarity=0.208 Sum_probs=30.6
Q ss_pred CCCCCceEEEEcccchhccCCCHHHHHHHhhhcCCCceEEEEEecC
Q psy7557 739 IDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 784 (936)
Q Consensus 739 ~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~v~~SAT~ 784 (936)
...+.++.+|+||||.|...- ...+++.+...+...++++...-+
T Consensus 125 ~~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CCCCcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCCh
Confidence 345677999999999987543 344555556556666777666554
No 425
>PRK05642 DNA replication initiation factor; Validated
Probab=94.81 E-value=0.1 Score=53.99 Aligned_cols=46 Identities=15% Similarity=0.209 Sum_probs=27.2
Q ss_pred CCCceEEEEccchhhhcC-CCHHHHHHHHhhcCCCCcEEEEEeccch
Q psy7557 221 LKAVSFVVLDEADRMLDL-GFEPQINKTSIYINPNRQTVMTSATWNK 266 (936)
Q Consensus 221 ~~~~~~lViDEah~l~~~-~~~~~~~~i~~~~~~~~q~~~~SAT~~~ 266 (936)
+.++++||||++|.+... .....+-.++..+......++++++.++
T Consensus 95 ~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 95 LEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 345679999999976432 2344455565555443344566666543
No 426
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.75 E-value=0.11 Score=53.76 Aligned_cols=52 Identities=17% Similarity=0.235 Sum_probs=34.9
Q ss_pred CCCCCcCChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhc
Q psy7557 589 QIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHL 660 (936)
Q Consensus 589 ~~p~~~~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~ 660 (936)
.+|..+.+|++ +++++.+.+ +....- .=+++.+|||||||.. +.+++.++..
T Consensus 100 ~Ip~~i~~~e~-LglP~i~~~-~~~~~~-----------------GLILVTGpTGSGKSTT-lAamId~iN~ 151 (353)
T COG2805 100 LIPSKIPTLEE-LGLPPIVRE-LAESPR-----------------GLILVTGPTGSGKSTT-LAAMIDYINK 151 (353)
T ss_pred ccCccCCCHHH-cCCCHHHHH-HHhCCC-----------------ceEEEeCCCCCcHHHH-HHHHHHHHhc
Confidence 56888889988 567665555 332111 2378889999999976 4456666643
No 427
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.74 E-value=0.39 Score=52.17 Aligned_cols=46 Identities=26% Similarity=0.275 Sum_probs=28.4
Q ss_pred cCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHH
Q psy7557 632 SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIE 687 (936)
Q Consensus 632 ~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~ 687 (936)
.+.++++.||||+|||..+. ++...+. ..|..|+|+ +..+|..++.
T Consensus 182 ~~~~Lll~G~~GtGKThLa~-aIa~~l~--------~~g~~V~y~-t~~~l~~~l~ 227 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSN-CIAKELL--------DRGKSVIYR-TADELIEILR 227 (329)
T ss_pred cCCcEEEECCCCCcHHHHHH-HHHHHHH--------HCCCeEEEE-EHHHHHHHHH
Confidence 35799999999999996433 2222222 235566665 4566655443
No 428
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.72 E-value=0.07 Score=55.32 Aligned_cols=18 Identities=11% Similarity=0.242 Sum_probs=15.1
Q ss_pred CCcEEEEecCCCCcchhc
Q psy7557 113 GHDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 113 g~d~l~~apTGsGKT~~~ 130 (936)
+..++++||+|+|||-..
T Consensus 45 ~~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLL 62 (235)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 367899999999999743
No 429
>PHA02533 17 large terminase protein; Provisional
Probab=94.72 E-value=0.14 Score=59.37 Aligned_cols=147 Identities=12% Similarity=0.068 Sum_probs=83.3
Q ss_pred CCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhccC--
Q psy7557 618 TPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDY-- 695 (936)
Q Consensus 618 ~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~-- 695 (936)
.|.|+|...+..+..++-.++..+=..|||.+....++..... .++..+++++|++.-|..+.+.++.+-.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~-------~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~ 131 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF-------NKDKNVGILAHKASMAAEVLDRTKQAIELL 131 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh-------CCCCEEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 5789999988877656666788888899998765444333322 2356999999999999888887775411
Q ss_pred CC-CEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHHHhhhcC--
Q psy7557 696 KG-LKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYIN-- 772 (936)
Q Consensus 696 ~~-~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~~-- 772 (936)
+. .+.. +... ....-.+.+|+.|.+.|... +...-....++++||+|.+-+ +...+..+...+.
T Consensus 132 P~l~~~~-i~~~---~~~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg 198 (534)
T PHA02533 132 PDFLQPG-IVEW---NKGSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSG 198 (534)
T ss_pred HHHhhcc-eeec---CccEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcC
Confidence 11 1100 0000 00011124566665554321 111223467899999997643 2233333333332
Q ss_pred CCceEEEEEecC
Q psy7557 773 PNRQTVMTSATW 784 (936)
Q Consensus 773 ~~~q~v~~SAT~ 784 (936)
...+++.+|++.
T Consensus 199 ~~~r~iiiSTp~ 210 (534)
T PHA02533 199 RSSKIIITSTPN 210 (534)
T ss_pred CCceEEEEECCC
Confidence 224566666553
No 430
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.71 E-value=0.087 Score=54.44 Aligned_cols=50 Identities=18% Similarity=0.307 Sum_probs=31.1
Q ss_pred CCCCcccChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCc-EEEEecCCCCcchhchHHHHHHhh
Q psy7557 69 QIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHD-MIGIAQTGTGKTFAFLLPALIHTH 139 (936)
Q Consensus 69 ~~p~p~~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d-~l~~apTGsGKT~~~~lp~l~~~~ 139 (936)
.+|..+.+|++ +++++.+.+ +... .+. +++.||||||||.+ +-+++.++.
T Consensus 100 ~Ip~~i~~~e~-LglP~i~~~-~~~~------------------~~GLILVTGpTGSGKSTT-lAamId~iN 150 (353)
T COG2805 100 LIPSKIPTLEE-LGLPPIVRE-LAES------------------PRGLILVTGPTGSGKSTT-LAAMIDYIN 150 (353)
T ss_pred ccCccCCCHHH-cCCCHHHHH-HHhC------------------CCceEEEeCCCCCcHHHH-HHHHHHHHh
Confidence 35677777877 466665444 2221 122 67789999999986 334555553
No 431
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.69 E-value=0.16 Score=56.18 Aligned_cols=55 Identities=13% Similarity=0.105 Sum_probs=32.9
Q ss_pred CCCceEEEEccchhhhcCC-CHHHHHHHHhhcCCC-CcEEEEEeccch-HHHHHHHHh
Q psy7557 221 LKAVSFVVLDEADRMLDLG-FEPQINKTSIYINPN-RQTVMTSATWNK-DVQRVAKKY 275 (936)
Q Consensus 221 ~~~~~~lViDEah~l~~~~-~~~~~~~i~~~~~~~-~q~~~~SAT~~~-~~~~~~~~~ 275 (936)
+.+.++++||++.+..... ....+..++....+. -.++.+|||... .+.+....|
T Consensus 252 ~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~ 309 (388)
T PRK12723 252 SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQF 309 (388)
T ss_pred hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHh
Confidence 4678999999999875321 123334444434333 456889999864 344455554
No 432
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.63 E-value=0.36 Score=53.50 Aligned_cols=130 Identities=15% Similarity=0.144 Sum_probs=65.1
Q ss_pred CCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEE-EEEecC-HHHHHHHHHHHHhccC-CCCEEEEEECCccc
Q psy7557 633 GHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSV-LVMAPT-RELATQIEREVNKIDY-KGLKAVCVYGGKEL 709 (936)
Q Consensus 633 g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~-lil~Pt-~~La~Q~~~~~~~~~~-~~~~~~~~~gg~~~ 709 (936)
++.+++++|||+|||.+..--+....... ...+.++ ++-+-| |.-+..+ ++.++. .++.+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~-----~~~g~~V~lit~Dt~R~aa~eQ---L~~~a~~lgvpv~~------- 238 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINS-----DDKSLNIKIITIDNYRIGAKKQ---IQTYGDIMGIPVKA------- 238 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhh-----ccCCCeEEEEeccCccHHHHHH---HHHHhhcCCcceEe-------
Confidence 46789999999999986532221111110 0123333 333433 3443322 333321 2333211
Q ss_pred hHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCC-CHHHHHHHhhhcCCC-ceEEEEEecCCh-
Q psy7557 710 EPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLG-FEPQINKTSIYINPN-RQTVMTSATWNK- 786 (936)
Q Consensus 710 ~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~-~~~~~~~i~~~~~~~-~q~v~~SAT~~~- 786 (936)
+-++..+...+.. +++.++|+||++.+..... ....+..+.....+. -.++.+|||...
T Consensus 239 --------------~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~ 300 (388)
T PRK12723 239 --------------IESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTS 300 (388)
T ss_pred --------------eCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHH
Confidence 2234444444432 4578899999999875321 112333344433333 456889999753
Q ss_pred HHHHHHHHh
Q psy7557 787 DVQRVAKKY 795 (936)
Q Consensus 787 ~~~~~~~~~ 795 (936)
++......|
T Consensus 301 ~~~~~~~~~ 309 (388)
T PRK12723 301 DVKEIFHQF 309 (388)
T ss_pred HHHHHHHHh
Confidence 344444554
No 433
>PRK08727 hypothetical protein; Validated
Probab=94.59 E-value=0.15 Score=52.73 Aligned_cols=16 Identities=31% Similarity=0.254 Sum_probs=13.6
Q ss_pred CcEEEEecCCCCcchh
Q psy7557 634 HDMIGIAQTGTGKTFA 649 (936)
Q Consensus 634 ~d~i~~apTGsGKTl~ 649 (936)
..+++.||+|+|||-.
T Consensus 42 ~~l~l~G~~G~GKThL 57 (233)
T PRK08727 42 DWLYLSGPAGTGKTHL 57 (233)
T ss_pred CeEEEECCCCCCHHHH
Confidence 3589999999999953
No 434
>KOG1001|consensus
Probab=94.57 E-value=0.12 Score=61.05 Aligned_cols=141 Identities=19% Similarity=0.172 Sum_probs=76.4
Q ss_pred cEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhccCCCCEEEEEeCCccchHHHH
Q psy7557 115 DMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLE 194 (936)
Q Consensus 115 d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 194 (936)
-.|+.-.-|-|||...+.-++.+-...............||++|+ ++..|+..++.+....+--++.++.| ......
T Consensus 154 ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~-s~~~qW~~elek~~~~~~l~v~v~~g--r~kd~~ 230 (674)
T KOG1001|consen 154 GGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPT-SLLTQWKTELEKVTEEDKLSIYVYHG--RTKDKS 230 (674)
T ss_pred cceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecch-HHHHHHHHHHhccCCccceEEEEecc--cccccc
Confidence 456667789999997554333222111100011245567888887 66788888886654444444445554 221212
Q ss_pred HhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHHHhhcCCCCcEEEEEeccch
Q psy7557 195 KIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNK 266 (936)
Q Consensus 195 ~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~ 266 (936)
.....+||++|++.|.. ..+.--..-.+|+||||.+-..... .-.....+...++. .+|+|...
T Consensus 231 -el~~~dVVltTy~il~~----~~l~~i~w~Riildea~~ikn~~tq--~~~a~~~L~a~~RW-cLtgtPiq 294 (674)
T KOG1001|consen 231 -ELNSYDVVLTTYDILKN----SPLVKIKWLRIVLDEAHTIKNKDTQ--IFKAVCQLDAKYRW-CLTGTPIQ 294 (674)
T ss_pred -hhcCCceEEeeHHHhhc----ccccceeEEEEEeccccccCCcchH--hhhhheeeccceee-eecCChhh
Confidence 22457899999987743 1111123346899999988655422 22222223333333 45666543
No 435
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=94.56 E-value=0.099 Score=60.50 Aligned_cols=149 Identities=19% Similarity=0.134 Sum_probs=79.9
Q ss_pred HHHHHHHHHHh-----cC----CcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHH
Q psy7557 101 PIQAQAWPILM-----SG----HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVN 171 (936)
Q Consensus 101 ~~Q~~ai~~~~-----~g----~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~ 171 (936)
|+|.-.+-.++ .| +.+++.-|=|.|||.....-++..+... ...++.+++.+++++-|..+++.+.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~-----g~~~~~i~~~A~~~~QA~~~f~~~~ 75 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD-----GEPGAEIYCAANTRDQAKIVFDEAK 75 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC-----CccCceEEEEeCCHHHHHHHHHHHH
Confidence 56666665555 22 4688889999999986544444444322 2457889999999999999999888
Q ss_pred hccCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHc--CCcCCCCceEEEEccchhhhcCCCHHHHHHHHh
Q psy7557 172 KIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSR--ASIDLKAVSFVVLDEADRMLDLGFEPQINKTSI 249 (936)
Q Consensus 172 ~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~ 249 (936)
++....-......+. ..... ..-.|.....+.....+.+ +...-.+..++|+||+|.+-+......+..-..
T Consensus 76 ~~i~~~~~l~~~~~~-----~~~~~-~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~ 149 (477)
T PF03354_consen 76 KMIEASPELRKRKKP-----KIIKS-NKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMG 149 (477)
T ss_pred HHHHhChhhccchhh-----hhhhh-hceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhc
Confidence 852111000000000 00000 0012322222222222222 122334678999999998765433333333222
Q ss_pred hcCCCCcEEEEE
Q psy7557 250 YINPNRQTVMTS 261 (936)
Q Consensus 250 ~~~~~~q~~~~S 261 (936)
. +++.+++..|
T Consensus 150 ~-r~~pl~~~IS 160 (477)
T PF03354_consen 150 A-RPNPLIIIIS 160 (477)
T ss_pred c-CCCceEEEEe
Confidence 2 4566666554
No 436
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.52 E-value=0.12 Score=53.26 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=16.5
Q ss_pred cCCcEEEEecCCCCcchhch
Q psy7557 112 SGHDMIGIAQTGTGKTFAFL 131 (936)
Q Consensus 112 ~g~d~l~~apTGsGKT~~~~ 131 (936)
.+..+++.||+|+|||..+.
T Consensus 37 ~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35689999999999997543
No 437
>PRK08116 hypothetical protein; Validated
Probab=94.52 E-value=0.44 Score=50.33 Aligned_cols=47 Identities=19% Similarity=0.181 Sum_probs=27.7
Q ss_pred CcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHH
Q psy7557 634 HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREV 690 (936)
Q Consensus 634 ~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~ 690 (936)
..+++.|++|+|||..+. ++...+.. .+..++++ +..+|...+...+
T Consensus 115 ~gl~l~G~~GtGKThLa~-aia~~l~~--------~~~~v~~~-~~~~ll~~i~~~~ 161 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAA-CIANELIE--------KGVPVIFV-NFPQLLNRIKSTY 161 (268)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHH--------cCCeEEEE-EHHHHHHHHHHHH
Confidence 349999999999997543 23333321 24455554 5566655554443
No 438
>PHA02533 17 large terminase protein; Provisional
Probab=94.46 E-value=0.18 Score=58.44 Aligned_cols=122 Identities=12% Similarity=0.068 Sum_probs=73.8
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhcc-CC
Q psy7557 98 TPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID-YK 176 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~-~~ 176 (936)
.|.|+|...+..+..++-.++..+=..|||.+....++..... ..+..+++++|++.-|..+.+.++.+- ..
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~-------~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~ 131 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF-------NKDKNVGILAHKASMAAEVLDRTKQAIELL 131 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh-------CCCCEEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 5789999988877666666788888899999766444433332 235689999999999999888887531 11
Q ss_pred C--CEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhc
Q psy7557 177 G--LKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLD 237 (936)
Q Consensus 177 ~--~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~ 237 (936)
+ ++.... .. ......+.+|..|.+.|-.. +...-.+..++|+||+|.+.+
T Consensus 132 P~l~~~~i~-~~---~~~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~ 183 (534)
T PHA02533 132 PDFLQPGIV-EW---NKGSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPN 183 (534)
T ss_pred HHHhhccee-ec---CccEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCC
Confidence 0 111000 00 00111224555665544221 111223567899999997643
No 439
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.41 E-value=0.13 Score=57.79 Aligned_cols=77 Identities=25% Similarity=0.233 Sum_probs=43.4
Q ss_pred cCCcEEEeCCchhHHHHHcC---CcC---CCCceE-EEEccchhhhcCC---------CHHHHHHHH-hh--cCCCCcEE
Q psy7557 198 EGCHILIATPGRLNDFVSRA---SID---LKAVSF-VVLDEADRMLDLG---------FEPQINKTS-IY--INPNRQTV 258 (936)
Q Consensus 198 ~~~~Iiv~Tp~~l~~~l~~~---~~~---~~~~~~-lViDEah~l~~~~---------~~~~~~~i~-~~--~~~~~q~~ 258 (936)
.+..|.++|.+.|...+.+. .+. +.+..+ ++-||||++.... -...++..+ .. -.++--++
T Consensus 80 d~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~l 159 (812)
T COG3421 80 DAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLLL 159 (812)
T ss_pred CceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCceee
Confidence 34789999999997666442 332 445554 4559999986321 111111111 11 13445577
Q ss_pred EEEeccchHHHHHHHHh
Q psy7557 259 MTSATWNKDVQRVAKKY 275 (936)
Q Consensus 259 ~~SAT~~~~~~~~~~~~ 275 (936)
.+|||.|.+ ..+..+|
T Consensus 160 ef~at~~k~-k~v~~ky 175 (812)
T COG3421 160 EFSATIPKE-KSVEDKY 175 (812)
T ss_pred hhhhcCCcc-ccHHHHh
Confidence 799999933 3444444
No 440
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.39 E-value=0.14 Score=51.18 Aligned_cols=54 Identities=22% Similarity=0.270 Sum_probs=33.7
Q ss_pred CCceEEEEccchhhhc-CCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHh
Q psy7557 222 KAVSFVVLDEADRMLD-LGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKY 275 (936)
Q Consensus 222 ~~~~~lViDEah~l~~-~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~ 275 (936)
++.++++||-+-+... ......+..+.....+..-.+.+|||...+....+..+
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~ 136 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAF 136 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHH
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHH
Confidence 4567888887765432 22345566666666677778899999876654444433
No 441
>PRK06921 hypothetical protein; Provisional
Probab=94.37 E-value=0.42 Score=50.43 Aligned_cols=46 Identities=22% Similarity=0.211 Sum_probs=26.9
Q ss_pred cCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHH
Q psy7557 112 SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQI 166 (936)
Q Consensus 112 ~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~ 166 (936)
.+.++++.||||+|||..+. .+...+.. ..+..++++. ..+|..++
T Consensus 116 ~~~~l~l~G~~G~GKThLa~-aia~~l~~-------~~g~~v~y~~-~~~l~~~l 161 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLT-AAANELMR-------KKGVPVLYFP-FVEGFGDL 161 (266)
T ss_pred CCCeEEEECCCCCcHHHHHH-HHHHHHhh-------hcCceEEEEE-HHHHHHHH
Confidence 35789999999999996432 23333321 1145566654 44554443
No 442
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.37 E-value=0.4 Score=52.71 Aligned_cols=68 Identities=19% Similarity=0.216 Sum_probs=35.8
Q ss_pred EeCchHHHHHHHcCCCCCCCceEEEEcccchhccC-CCHHHHHHHhhhcCCCceEEEEEecCChHH-HHHHHHh
Q psy7557 724 IATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDL-GFEPQINKTSIYINPNRQTVMTSATWNKDV-QRVAKKY 795 (936)
Q Consensus 724 V~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~-~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~-~~~~~~~ 795 (936)
+.+++.+...+. .+.+.++|+||++-+.... .....+..+.....+...++.+|||..... ......|
T Consensus 200 ~~~~~~l~~~l~----~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f 269 (374)
T PRK14722 200 VKDGGDLQLALA----ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAY 269 (374)
T ss_pred cCCcccHHHHHH----HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHH
Confidence 334444444433 2445688999998653211 122333333332334455788999975443 3444554
No 443
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.31 E-value=0.12 Score=54.25 Aligned_cols=114 Identities=11% Similarity=0.191 Sum_probs=56.4
Q ss_pred CcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHh-ccCCCCEEEEEeCCccchHH
Q psy7557 114 HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK-IDYKGLKAVCVYGGKEIEPQ 192 (936)
Q Consensus 114 ~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~-~~~~~~~~~~~~gg~~~~~~ 192 (936)
.+++++|+||-|||.+.- -+...+..........-|.+.+-+|...=..-.|..+-. ++. ..+ ........
T Consensus 62 p~lLivG~snnGKT~Ii~--rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga-P~~-----~~~~~~~~ 133 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIE--RFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGA-PYR-----PRDRVAKL 133 (302)
T ss_pred CceEEecCCCCcHHHHHH--HHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCc-ccC-----CCCCHHHH
Confidence 589999999999998421 122211111111112346777778875544444444432 211 110 00111111
Q ss_pred HHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHH--HHHHHhhcCCC
Q psy7557 193 LEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQ--INKTSIYINPN 254 (936)
Q Consensus 193 ~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~--~~~i~~~~~~~ 254 (936)
... ..+++. --.+++|||||.|.++......+ +...++.+.+.
T Consensus 134 ~~~--------------~~~llr-----~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~Ne 178 (302)
T PF05621_consen 134 EQQ--------------VLRLLR-----RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNE 178 (302)
T ss_pred HHH--------------HHHHHH-----HcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhc
Confidence 000 112222 34688999999999987664432 33334444443
No 444
>PF13871 Helicase_C_4: Helicase_C-like
Probab=94.30 E-value=0.081 Score=55.12 Aligned_cols=82 Identities=16% Similarity=0.287 Sum_probs=61.0
Q ss_pred HHHHHhhcCCcEEEEEecccccCCCCCC--------CcEEEEecCCCCccccccCCCCcccCCCc-eeEEEEeccc---C
Q psy7557 363 IALEDITSGYARICVATDVASRGLDVPD--------LTHVINYDFPSHIEEYVHRVGRTGRAGKS-GESITLMTRK---D 430 (936)
Q Consensus 363 ~~~~~f~~g~~~vLvaT~~~~~GiDip~--------v~~VI~~d~p~s~~~y~qr~GRagR~g~~-g~~~~~~~~~---~ 430 (936)
..-+.|.+|+.+|+|.|++.+.||-+.+ -++-|...+|+|....+|..||+-|.|+. .--+.++..+ |
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 4557899999999999999999998874 23566888999999999999999999875 4344444433 4
Q ss_pred hhhHHhHHHHHhhc
Q psy7557 431 WSHAHEIIPILEEG 444 (936)
Q Consensus 431 ~~~~~~l~~~l~~~ 444 (936)
...+..+.+-|+..
T Consensus 132 ~Rfas~va~rL~sL 145 (278)
T PF13871_consen 132 RRFASTVARRLESL 145 (278)
T ss_pred HHHHHHHHHHHhhc
Confidence 44444454544443
No 445
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.28 E-value=0.19 Score=55.17 Aligned_cols=56 Identities=20% Similarity=0.194 Sum_probs=30.5
Q ss_pred CCCceEEEEccchhhhc-CCCHHHHHHHHhhcCCCCcEEEEEeccchHH-HHHHHHhc
Q psy7557 221 LKAVSFVVLDEADRMLD-LGFEPQINKTSIYINPNRQTVMTSATWNKDV-QRVAKKYM 276 (936)
Q Consensus 221 ~~~~~~lViDEah~l~~-~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~-~~~~~~~~ 276 (936)
+.+.++++||++-+... ......+..+.....+...++.+|||..... .+.+..|.
T Consensus 213 l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~ 270 (374)
T PRK14722 213 LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYR 270 (374)
T ss_pred hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHH
Confidence 45668899999865421 1122333333222233445788999986544 34455543
No 446
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=94.24 E-value=0.11 Score=48.84 Aligned_cols=43 Identities=28% Similarity=0.390 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhcCCC---cEEEeccc--CccCCCCCC--CCEEEEccCC
Q psy7557 878 QEDREIALEDITSGYA---RICVATDV--ASRGLDVPD--LTHVINYDFP 920 (936)
Q Consensus 878 ~~~R~~~~~~F~~g~~---~vLVaT~~--~~~Gidip~--v~~VI~~d~p 920 (936)
..+...+++.|++... .||+|+.- +++|||+|+ ++.||..++|
T Consensus 30 ~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glP 79 (142)
T smart00491 30 SGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIP 79 (142)
T ss_pred CchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecC
Confidence 3455778888887543 69988877 999999998 5678888887
No 447
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=94.23 E-value=0.14 Score=59.37 Aligned_cols=150 Identities=19% Similarity=0.134 Sum_probs=79.5
Q ss_pred HHHHHHHHhhh-----cC----CcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHH
Q psy7557 621 PIQAQAWPILM-----SG----HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVN 691 (936)
Q Consensus 621 ~iQ~~ai~~~l-----~g----~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~ 691 (936)
|+|.-.+-.++ .| +.+++.-|=|.|||.....-++..+... ...++.+++.+++++-|..+.+.+.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~-----g~~~~~i~~~A~~~~QA~~~f~~~~ 75 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD-----GEPGAEIYCAANTRDQAKIVFDEAK 75 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC-----CccCceEEEEeCCHHHHHHHHHHHH
Confidence 56776666555 12 3688888999999975444334333321 2457899999999999999999888
Q ss_pred hccCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHc--CCCCCCCceEEEEcccchhccCCCHHHHHHHhh
Q psy7557 692 KIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSR--ASIDLKAVSFVVLDEADRMLDLGFEPQINKTSI 769 (936)
Q Consensus 692 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~--~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~ 769 (936)
.+....-......+. ..... ..-.|.....+.....+.+ ....-.+..++|+||+|.+-+......+..-..
T Consensus 76 ~~i~~~~~l~~~~~~-----~~~~~-~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~ 149 (477)
T PF03354_consen 76 KMIEASPELRKRKKP-----KIIKS-NKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMG 149 (477)
T ss_pred HHHHhChhhccchhh-----hhhhh-hceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhc
Confidence 863221000000000 00000 0012222221211111111 122234578999999998765433333333332
Q ss_pred hcCCCceEEEEEe
Q psy7557 770 YINPNRQTVMTSA 782 (936)
Q Consensus 770 ~~~~~~q~v~~SA 782 (936)
. +++.+++..|.
T Consensus 150 ~-r~~pl~~~IST 161 (477)
T PF03354_consen 150 A-RPNPLIIIIST 161 (477)
T ss_pred c-CCCceEEEEeC
Confidence 2 35666666654
No 448
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.23 E-value=0.099 Score=56.50 Aligned_cols=67 Identities=21% Similarity=0.247 Sum_probs=44.7
Q ss_pred HHHHHHhCCCCCCcHHHHHHHHHH-hcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHH
Q psy7557 87 ILRQLENLSFTTPSPIQAQAWPIL-MSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTREL 162 (936)
Q Consensus 87 l~~~l~~~g~~~~~~~Q~~ai~~~-~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~L 162 (936)
-+..+...|+ +++.|.+.+..+ ..+++++++|+||||||. ++-.++..+... ....+++++-.+.||
T Consensus 123 tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~~~~------~~~~rivtIEd~~El 190 (319)
T PRK13894 123 TLDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEMVIQ------DPTERVFIIEDTGEI 190 (319)
T ss_pred CHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhhhhc------CCCceEEEEcCCCcc
Confidence 3455666666 567788888754 467899999999999995 344444333211 223478888888877
No 449
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.09 E-value=0.18 Score=50.23 Aligned_cols=48 Identities=19% Similarity=0.127 Sum_probs=32.1
Q ss_pred EEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhc
Q psy7557 116 MIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 173 (936)
Q Consensus 116 ~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 173 (936)
+++.||+|+|||...+--+...+ ..+..++|+.. .+-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~---------~~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL---------ARGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH---------HCCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 68899999999986543333322 23566787764 45677777777765
No 450
>PRK05642 DNA replication initiation factor; Validated
Probab=94.09 E-value=0.18 Score=52.21 Aligned_cols=44 Identities=16% Similarity=0.229 Sum_probs=25.2
Q ss_pred CCceEEEEcccchhccC-CCHHHHHHHhhhcCC-CceEEEEEecCCh
Q psy7557 742 KAVSFVVLDEADRMLDL-GFEPQINKTSIYINP-NRQTVMTSATWNK 786 (936)
Q Consensus 742 ~~i~~lViDEah~l~~~-~~~~~~~~i~~~~~~-~~q~v~~SAT~~~ 786 (936)
..++++|||++|.+... .+...+-.++..+.. +.+ ++++++.++
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~-ilits~~~p 141 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRR-LLLAASKSP 141 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCE-EEEeCCCCH
Confidence 35578999999976533 233445555544433 445 555555443
No 451
>PRK06921 hypothetical protein; Provisional
Probab=94.09 E-value=0.47 Score=50.02 Aligned_cols=45 Identities=22% Similarity=0.217 Sum_probs=26.7
Q ss_pred CCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHH
Q psy7557 633 GHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQI 686 (936)
Q Consensus 633 g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~ 686 (936)
+.++++.|++|+|||..+. ++...+.. ..+..++|+. ..++..++
T Consensus 117 ~~~l~l~G~~G~GKThLa~-aia~~l~~-------~~g~~v~y~~-~~~l~~~l 161 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLT-AAANELMR-------KKGVPVLYFP-FVEGFGDL 161 (266)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHhh-------hcCceEEEEE-HHHHHHHH
Confidence 5789999999999996432 22222211 1155666665 44554443
No 452
>PRK09183 transposase/IS protein; Provisional
Probab=94.07 E-value=0.71 Score=48.55 Aligned_cols=47 Identities=21% Similarity=0.304 Sum_probs=28.9
Q ss_pred hhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHH
Q psy7557 630 LMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQI 686 (936)
Q Consensus 630 ~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~ 686 (936)
+-+|.++++.||+|+|||..+..-..... ..|..++++ +..+|..++
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~---------~~G~~v~~~-~~~~l~~~l 145 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAV---------RAGIKVRFT-TAADLLLQL 145 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHH---------HcCCeEEEE-eHHHHHHHH
Confidence 44688999999999999965442222111 235566665 445565443
No 453
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.07 E-value=0.063 Score=56.09 Aligned_cols=93 Identities=16% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHhCCCCCCcHHHHHHHHHHhcCC-------cEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHH
Q psy7557 91 LENLSFTTPSPIQAQAWPILMSGH-------DMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELA 163 (936)
Q Consensus 91 l~~~g~~~~~~~Q~~ai~~~~~g~-------d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La 163 (936)
+....|......+..++..+.+.. ++++.||+|+|||..+.--....+ . ...-++.+++.+|+
T Consensus 76 ~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~---------~g~sv~f~~~~el~ 145 (254)
T COG1484 76 FEEFDFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-K---------AGISVLFITAPDLL 145 (254)
T ss_pred cccccccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-H---------cCCeEEEEEHHHHH
Q ss_pred HHHHHHHHhccCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcC-CCCceEEEEccc
Q psy7557 164 TQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASID-LKAVSFVVLDEA 232 (936)
Q Consensus 164 ~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~-~~~~~~lViDEa 232 (936)
.++...+.. ......... +.++++|||||.
T Consensus 146 ~~Lk~~~~~---------------------------------------~~~~~~l~~~l~~~dlLIiDDl 176 (254)
T COG1484 146 SKLKAAFDE---------------------------------------GRLEEKLLRELKKVDLLIIDDI 176 (254)
T ss_pred HHHHHHHhc---------------------------------------CchHHHHHHHhhcCCEEEEecc
No 454
>KOG1131|consensus
Probab=94.03 E-value=0.55 Score=51.94 Aligned_cols=59 Identities=17% Similarity=0.096 Sum_probs=34.4
Q ss_pred CCCCcHHHHHHHHHHh----cCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCc
Q psy7557 96 FTTPSPIQAQAWPILM----SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPT 159 (936)
Q Consensus 96 ~~~~~~~Q~~ai~~~~----~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt 159 (936)
|..-+|-|.+=+-.+. .+.+.++-+|+|+|||.+.+--++......+ ....+.+|-.-|
T Consensus 14 Y~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p-----~~~~KliYCSRT 76 (755)
T KOG1131|consen 14 YDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYP-----DEHRKLIYCSRT 76 (755)
T ss_pred CcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCC-----cccceEEEecCc
Confidence 4455666766554433 3567899999999999874433333222221 123456665555
No 455
>PRK06835 DNA replication protein DnaC; Validated
Probab=93.90 E-value=0.66 Score=50.41 Aligned_cols=46 Identities=26% Similarity=0.275 Sum_probs=27.8
Q ss_pred cCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHH
Q psy7557 112 SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIE 167 (936)
Q Consensus 112 ~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~ 167 (936)
.+.++++.||||+|||..+. .+...+. ..+..|+++ +..+|..++.
T Consensus 182 ~~~~Lll~G~~GtGKThLa~-aIa~~l~--------~~g~~V~y~-t~~~l~~~l~ 227 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSN-CIAKELL--------DRGKSVIYR-TADELIEILR 227 (329)
T ss_pred cCCcEEEECCCCCcHHHHHH-HHHHHHH--------HCCCeEEEE-EHHHHHHHHH
Confidence 35789999999999997432 2233332 234555554 4556655543
No 456
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=93.89 E-value=0.45 Score=56.84 Aligned_cols=17 Identities=29% Similarity=0.600 Sum_probs=13.8
Q ss_pred CCceEEEEccchhhhcC
Q psy7557 222 KAVSFVVLDEADRMLDL 238 (936)
Q Consensus 222 ~~~~~lViDEah~l~~~ 238 (936)
..+.+|||||+|.+...
T Consensus 868 r~v~IIILDEID~L~kK 884 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITK 884 (1164)
T ss_pred ccceEEEeehHhhhCcc
Confidence 45679999999998754
No 457
>PRK06893 DNA replication initiation factor; Validated
Probab=93.86 E-value=0.087 Score=54.37 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=28.1
Q ss_pred CCCceEEEEcccchhccCC-CHHHHHHHhhhcC-CCceEEEEEecCChH
Q psy7557 741 LKAVSFVVLDEADRMLDLG-FEPQINKTSIYIN-PNRQTVMTSATWNKD 787 (936)
Q Consensus 741 ~~~i~~lViDEah~l~~~~-~~~~~~~i~~~~~-~~~q~v~~SAT~~~~ 787 (936)
+.+.+++||||+|.+.... +...+..++.... .+.+++++|++.++.
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 3467899999999875332 2333333333332 345677788876544
No 458
>KOG1001|consensus
Probab=93.84 E-value=0.24 Score=58.68 Aligned_cols=85 Identities=13% Similarity=0.080 Sum_probs=58.5
Q ss_pred cEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCC--cEEEecccCccCCCCCCCCEEEEccCCC
Q psy7557 844 KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYA--RICVATDVASRGLDVPDLTHVINYDFPS 921 (936)
Q Consensus 844 ~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~--~vLVaT~~~~~Gidip~v~~VI~~d~p~ 921 (936)
+++||+.-..-+..+...|...++....+.|.|+...|..++..|..+.. -.+++..+...|+|+-...+|+..|+-.
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~w 620 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWW 620 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhc
Confidence 55666555555555555555555556667788888888888888885432 2456677888888888888888888766
Q ss_pred ChhhhHh
Q psy7557 922 HIEEYVH 928 (936)
Q Consensus 922 s~~~yiq 928 (936)
++..--|
T Consensus 621 np~~eeQ 627 (674)
T KOG1001|consen 621 NPAVEEQ 627 (674)
T ss_pred ChHHHHH
Confidence 6655443
No 459
>KOG0989|consensus
Probab=93.78 E-value=0.11 Score=53.72 Aligned_cols=43 Identities=14% Similarity=0.206 Sum_probs=28.4
Q ss_pred CCCCceEEEEccchhhhcCCCHHHHHHHHhhcCCCCcEEEEEec
Q psy7557 220 DLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSAT 263 (936)
Q Consensus 220 ~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT 263 (936)
.....+.+|+||||.|... -...+++.+...+....+++...-
T Consensus 126 ~~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~~trFiLIcny 168 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSD-AQAALRRTMEDFSRTTRFILICNY 168 (346)
T ss_pred CCCcceEEEEechhhhhHH-HHHHHHHHHhccccceEEEEEcCC
Confidence 4566799999999988643 234555666655556666665544
No 460
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=93.77 E-value=0.21 Score=51.51 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=16.4
Q ss_pred cCCcEEEEecCCCCcchhhH
Q psy7557 632 SGHDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 632 ~g~d~i~~apTGsGKTl~~~ 651 (936)
.+..+++.||+|+|||..+.
T Consensus 37 ~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35689999999999997543
No 461
>KOG0701|consensus
Probab=93.76 E-value=0.039 Score=69.91 Aligned_cols=92 Identities=20% Similarity=0.312 Sum_probs=76.1
Q ss_pred cEEEEcCChHHHHHHHHHHHhcC-CceEEEeCCCC-----------HHHHHHHHHHhhcCCCcEEEecccCccCCCCCCC
Q psy7557 844 KVMVFMGRKASVSAMSSDLACQY-RKSCSLYGDLS-----------QEDREIALEDITSGYARICVATDVASRGLDVPDL 911 (936)
Q Consensus 844 ~~iIF~~s~~~~~~l~~~L~~~~-~~~~~~h~~l~-----------~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v 911 (936)
..++||+.+..+..+++.+...+ ..+..+.|.+. +..+.+++..|....+++|++|+++..|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 35899999999999998887643 23333444332 2336789999999999999999999999999999
Q ss_pred CEEEEccCCCChhhhHhhhhhccC
Q psy7557 912 THVINYDFPSHIEEYVHRVGRTGE 935 (936)
Q Consensus 912 ~~VI~~d~p~s~~~yiqr~GRaGR 935 (936)
+.|+.++.|.....|+|+.||+-+
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~ 397 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARA 397 (1606)
T ss_pred hhheeccCcchHHHHHHhhccccc
Confidence 999999999999999999999854
No 462
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=93.75 E-value=0.29 Score=56.28 Aligned_cols=49 Identities=10% Similarity=0.116 Sum_probs=27.1
Q ss_pred CcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q psy7557 114 HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREV 170 (936)
Q Consensus 114 ~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~ 170 (936)
+.+++.||+|+|||.... .+...+..+ ..+.+++++ +..++..++...+
T Consensus 149 ~~l~l~G~~G~GKThL~~-ai~~~~~~~------~~~~~v~yi-~~~~~~~~~~~~~ 197 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLH-AIGNYILEK------NPNAKVVYV-TSEKFTNDFVNAL 197 (450)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHh------CCCCeEEEE-EHHHHHHHHHHHH
Confidence 458999999999997532 222333211 124456665 4455544443333
No 463
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=93.63 E-value=0.58 Score=55.95 Aligned_cols=37 Identities=19% Similarity=0.131 Sum_probs=22.9
Q ss_pred ccccccCCCCcccCCC-------ceeEEEEecccChhhHHhHHH
Q psy7557 403 IEEYVHRVGRTGRAGK-------SGESITLMTRKDWSHAHEIIP 439 (936)
Q Consensus 403 ~~~y~qr~GRagR~g~-------~g~~~~~~~~~~~~~~~~l~~ 439 (936)
-..|.-|.||..-.-+ .....++++..|....+.|.+
T Consensus 487 ~~~y~l~kg~is~fy~~~~~~~~~~e~c~y~d~~d~~~i~~~~~ 530 (1164)
T PTZ00112 487 ENIYQLRKGKISSFYKNTNSNQVEAEVCIYYDQHDAQYIKELEE 530 (1164)
T ss_pred hhhheecccccchhhhcCCCceeeEEEEEEEccccHHHHHHHHH
Confidence 3457777787765411 145556777888777666654
No 464
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.61 E-value=0.18 Score=54.38 Aligned_cols=65 Identities=15% Similarity=0.146 Sum_probs=43.1
Q ss_pred HHHHhCCCCCCcHHHHHHHHHHh-cCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHH
Q psy7557 89 RQLENLSFTTPSPIQAQAWPILM-SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTREL 162 (936)
Q Consensus 89 ~~l~~~g~~~~~~~Q~~ai~~~~-~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~L 162 (936)
..+...|. +++.|.+.+..+. .+.+++++|+||||||.. +-.++..+... ..+-+++.+-.+.||
T Consensus 121 ~~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~------~~~~rivtiEd~~El 186 (323)
T PRK13833 121 DDYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVAS------APEDRLVILEDTAEI 186 (323)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcC------CCCceEEEecCCccc
Confidence 34555555 5678888776654 567999999999999974 33333333211 123477888888887
No 465
>PRK09183 transposase/IS protein; Provisional
Probab=93.57 E-value=0.38 Score=50.60 Aligned_cols=22 Identities=18% Similarity=0.418 Sum_probs=18.3
Q ss_pred HhcCCcEEEEecCCCCcchhch
Q psy7557 110 LMSGHDMIGIAQTGTGKTFAFL 131 (936)
Q Consensus 110 ~~~g~d~l~~apTGsGKT~~~~ 131 (936)
+.+|.++++.||+|+|||..+.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~ 120 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAI 120 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHH
Confidence 4468899999999999997544
No 466
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.56 E-value=0.71 Score=48.53 Aligned_cols=131 Identities=17% Similarity=0.220 Sum_probs=68.3
Q ss_pred cCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEE-cCcH--HHHHHHHHHHHhccCCCCEEEEEeCCcc
Q psy7557 112 SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVM-APTR--ELATQIEREVNKIDYKGLKAVCVYGGKE 188 (936)
Q Consensus 112 ~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil-~Pt~--~La~Q~~~~~~~~~~~~~~~~~~~gg~~ 188 (936)
.+..+.+++|+|+|||..+..-+.. +. ..+..+.++ +.+. +.+.|+......+ ++.+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~-l~--------~~~~~v~~i~~D~~ri~~~~ql~~~~~~~---~~~~~~------ 135 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQ-FH--------GKKKTVGFITTDHSRIGTVQQLQDYVKTI---GFEVIA------ 135 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH-HH--------HcCCeEEEEecCCCCHHHHHHHHHHhhhc---CceEEe------
Confidence 4567889999999999976543222 11 123344433 3232 4455554433322 222221
Q ss_pred chHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhc-CCCHHHHHHHHhhcCCCCcEEEEEeccc-h
Q psy7557 189 IEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLD-LGFEPQINKTSIYINPNRQTVMTSATWN-K 266 (936)
Q Consensus 189 ~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~-~~~~~~~~~i~~~~~~~~q~~~~SAT~~-~ 266 (936)
..+|..+.+.+..- -...+.++++||-+=+... ......+..+.....++.-.+.+|||.. .
T Consensus 136 ---------------~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~ 199 (270)
T PRK06731 136 ---------------VRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK 199 (270)
T ss_pred ---------------cCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH
Confidence 12344443333211 0123578899998876532 1122334444444455545677999864 4
Q ss_pred HHHHHHHHhc
Q psy7557 267 DVQRVAKKYM 276 (936)
Q Consensus 267 ~~~~~~~~~~ 276 (936)
+..+.++.|-
T Consensus 200 d~~~~~~~f~ 209 (270)
T PRK06731 200 DMIEIITNFK 209 (270)
T ss_pred HHHHHHHHhC
Confidence 6667777764
No 467
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=93.55 E-value=0.3 Score=55.50 Aligned_cols=50 Identities=12% Similarity=0.213 Sum_probs=29.0
Q ss_pred CCceEEEEccchhhhcCC-CHHHHHHHHhhc-CCCCcEEEEEeccchHHHHH
Q psy7557 222 KAVSFVVLDEADRMLDLG-FEPQINKTSIYI-NPNRQTVMTSATWNKDVQRV 271 (936)
Q Consensus 222 ~~~~~lViDEah~l~~~~-~~~~~~~i~~~~-~~~~q~~~~SAT~~~~~~~~ 271 (936)
.++++|+|||+|.+.... ....+..++..+ ....|+++.|-+.|..+..+
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l 252 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAM 252 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhh
Confidence 467899999999876432 223333333322 34566666665556555433
No 468
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.54 E-value=0.8 Score=48.46 Aligned_cols=54 Identities=20% Similarity=0.354 Sum_probs=28.6
Q ss_pred CceEEEEccchhhhc-CCCHHHHHHHHhhcC------CCCcEEEEEeccchHHHHHHHHhc
Q psy7557 223 AVSFVVLDEADRMLD-LGFEPQINKTSIYIN------PNRQTVMTSATWNKDVQRVAKKYM 276 (936)
Q Consensus 223 ~~~~lViDEah~l~~-~~~~~~~~~i~~~~~------~~~q~~~~SAT~~~~~~~~~~~~~ 276 (936)
+.+++|||=+-++.. ......+..+....+ ++--++.++||...+....+..+.
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~ 214 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFN 214 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHH
Confidence 455666665554321 112233444444333 555678888987765555555544
No 469
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=93.51 E-value=0.25 Score=51.00 Aligned_cols=18 Identities=11% Similarity=0.231 Sum_probs=15.1
Q ss_pred cCCcEEEEecCCCCcchh
Q psy7557 632 SGHDMIGIAQTGTGKTFA 649 (936)
Q Consensus 632 ~g~d~i~~apTGsGKTl~ 649 (936)
.++.+++.||+|+|||..
T Consensus 41 ~~~~~~l~G~~G~GKT~L 58 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHL 58 (227)
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 346799999999999964
No 470
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=93.46 E-value=0.26 Score=50.81 Aligned_cols=43 Identities=7% Similarity=0.140 Sum_probs=25.3
Q ss_pred CceEEEEccchhhhcCCCHHHHHHHHhhcCCC-CcEEEEEeccch
Q psy7557 223 AVSFVVLDEADRMLDLGFEPQINKTSIYINPN-RQTVMTSATWNK 266 (936)
Q Consensus 223 ~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~-~q~~~~SAT~~~ 266 (936)
..+++||||+|.+.... ...+..++...... ..+++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~~-~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDAQ-QIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCchH-HHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 46789999999875332 33344444433333 335777777654
No 471
>PRK08084 DNA replication initiation factor; Provisional
Probab=93.41 E-value=0.31 Score=50.46 Aligned_cols=18 Identities=11% Similarity=0.242 Sum_probs=15.0
Q ss_pred CCcEEEEecCCCCcchhh
Q psy7557 633 GHDMIGIAQTGTGKTFAF 650 (936)
Q Consensus 633 g~d~i~~apTGsGKTl~~ 650 (936)
+..+++.||+|+|||...
T Consensus 45 ~~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLL 62 (235)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 357999999999999643
No 472
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=93.39 E-value=0.19 Score=57.31 Aligned_cols=110 Identities=14% Similarity=0.115 Sum_probs=57.1
Q ss_pred CcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhccCCCCEEEEEECCccchHHH
Q psy7557 634 HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQL 713 (936)
Q Consensus 634 ~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 713 (936)
+.+++.|++|+|||.. +-++.+.... ..++.+++|+.+ .++..++...+..- .
T Consensus 142 npl~i~G~~G~GKTHL--l~Ai~~~l~~-----~~~~~~v~yv~~-~~f~~~~~~~l~~~---~---------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHL--LKAAKNYIES-----NFSDLKVSYMSG-DEFARKAVDILQKT---H---------------- 194 (450)
T ss_pred CceEEECCCCCcHHHH--HHHHHHHHHH-----hCCCCeEEEEEH-HHHHHHHHHHHHHh---h----------------
Confidence 4589999999999953 2232222111 134567777654 56655555544320 0
Q ss_pred HHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCC-CHHHHHHHhhhc-CCCceEEEEEecCChHH
Q psy7557 714 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLG-FEPQINKTSIYI-NPNRQTVMTSATWNKDV 788 (936)
Q Consensus 714 ~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~-~~~~~~~i~~~~-~~~~q~v~~SAT~~~~~ 788 (936)
+.+..+.. .+.++++|||||+|.+.... ....+..++..+ ..+.|+|+.|-..|...
T Consensus 195 --------------~~~~~~~~----~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 195 --------------KEIEQFKN----EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred --------------hHHHHHHH----HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 11111111 13467899999999775321 222333333332 34456666555554433
No 473
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=93.34 E-value=0.28 Score=54.72 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=25.1
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCCCcchhch
Q psy7557 99 PSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFL 131 (936)
Q Consensus 99 ~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~ 131 (936)
+-......+..+..++++++.+|+|+|||..+-
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 334445556666788999999999999998654
No 474
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.32 E-value=0.22 Score=49.48 Aligned_cols=48 Identities=19% Similarity=0.127 Sum_probs=32.0
Q ss_pred EEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc
Q psy7557 636 MIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693 (936)
Q Consensus 636 ~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 693 (936)
+++.||+|+|||...+--+...+ ..|..++|+.. .+-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~---------~~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL---------ARGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH---------HCCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 68899999999975442222222 24667888864 45667777777765
No 475
>PRK11054 helD DNA helicase IV; Provisional
Probab=93.28 E-value=0.28 Score=58.87 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=51.3
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhc
Q psy7557 97 TTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 173 (936)
Q Consensus 97 ~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 173 (936)
..+++-|.+|+-.. ..++++.|..|||||.+.+- -+.++.... ...+.++|+++.|+..|..+.+++...
T Consensus 195 ~~L~~~Q~~av~~~--~~~~lV~agaGSGKT~vl~~-r~ayLl~~~----~~~~~~IL~ltft~~AA~em~eRL~~~ 264 (684)
T PRK11054 195 SPLNPSQARAVVNG--EDSLLVLAGAGSGKTSVLVA-RAGWLLARG----QAQPEQILLLAFGRQAAEEMDERIRER 264 (684)
T ss_pred CCCCHHHHHHHhCC--CCCeEEEEeCCCCHHHHHHH-HHHHHHHhC----CCCHHHeEEEeccHHHHHHHHHHHHHh
Confidence 46899999998643 35689999999999997443 222332211 123458999999999999999998873
No 476
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=93.19 E-value=0.8 Score=42.25 Aligned_cols=17 Identities=18% Similarity=0.393 Sum_probs=13.8
Q ss_pred CceEEEEccchhhhcCC
Q psy7557 223 AVSFVVLDEADRMLDLG 239 (936)
Q Consensus 223 ~~~~lViDEah~l~~~~ 239 (936)
...+++|||+|.+....
T Consensus 58 ~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 58 KPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp TSEEEEEETGGGTSHHC
T ss_pred cceeeeeccchhccccc
Confidence 35899999999987654
No 477
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=93.17 E-value=0.21 Score=56.67 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=14.1
Q ss_pred CcEEEEecCCCCcchhc
Q psy7557 114 HDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 114 ~d~l~~apTGsGKT~~~ 130 (936)
+.+++.||+|+|||...
T Consensus 137 n~l~l~G~~G~GKThL~ 153 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL 153 (405)
T ss_pred CeEEEECCCCCcHHHHH
Confidence 35789999999999753
No 478
>KOG0701|consensus
Probab=93.14 E-value=0.036 Score=70.18 Aligned_cols=94 Identities=20% Similarity=0.312 Sum_probs=77.0
Q ss_pred cEEEEeCchHHHHHHHHHhhhcC-CceeeecCCCC-----------HHHHHHHHHHhhcCCcEEEEEecccccCCCCCCC
Q psy7557 324 KVMVFMGRKASVSAMSSDLACQY-RKSCSLYGDLS-----------QEDREIALEDITSGYARICVATDVASRGLDVPDL 391 (936)
Q Consensus 324 ~~iVF~~~~~~~~~l~~~L~~~~-~~~~~~h~~~~-----------~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v 391 (936)
-.++||+.+..+..+++.++... ..+..+.|.+. +..+..++..|....+++|++|+++..|+|+|.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 45899999999998888887543 22223444332 2346789999999999999999999999999999
Q ss_pred cEEEEecCCCCccccccCCCCcccCC
Q psy7557 392 THVINYDFPSHIEEYVHRVGRTGRAG 417 (936)
Q Consensus 392 ~~VI~~d~p~s~~~y~qr~GRagR~g 417 (936)
+.|+.++.|.....|+|..||+-+.+
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999997764
No 479
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=93.13 E-value=0.15 Score=54.02 Aligned_cols=60 Identities=25% Similarity=0.178 Sum_probs=44.6
Q ss_pred CCCCCcHHHHHHHHHHhcCC-cEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHH
Q psy7557 95 SFTTPSPIQAQAWPILMSGH-DMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELAT 164 (936)
Q Consensus 95 g~~~~~~~Q~~ai~~~~~g~-d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~ 164 (936)
.|.+.++-|...+-.+..++ |+++++.||||||.. +-++.... ...-+++.+--|.||-.
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl--LNal~~~i--------~~~eRvItiEDtaELql 214 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL--LNALSGFI--------DSDERVITIEDTAELQL 214 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH--HHHHHhcC--------CCcccEEEEeehhhhcc
Confidence 46778999999998888766 999999999999973 33332221 12238999999998843
No 480
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=93.05 E-value=0.17 Score=61.05 Aligned_cols=69 Identities=19% Similarity=0.174 Sum_probs=51.4
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhc
Q psy7557 98 TPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 173 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 173 (936)
.+++-|.+|+... ...++|.|+.|||||.+..- -+.++.... .....++|+++.|+..|.++.+++.++
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~-Ria~Li~~~----~v~p~~IL~lTFT~kAA~em~~Rl~~~ 70 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITN-KIAHLIRGC----GYQARHIAAVTFTNKAAREMKERVAQT 70 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHH-HHHHHHHhc----CCCHHHeeeEechHHHHHHHHHHHHHH
Confidence 4789999998753 46789999999999997433 333333211 123457999999999999999999874
No 481
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.05 E-value=0.22 Score=53.86 Aligned_cols=66 Identities=21% Similarity=0.255 Sum_probs=43.4
Q ss_pred HHHHHhCCCCCCcHHHHHHHHhhh-cCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHH
Q psy7557 608 LRQLENLSFTTPSPIQAQAWPILM-SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTREL 682 (936)
Q Consensus 608 ~~~l~~~g~~~p~~iQ~~ai~~~l-~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~L 682 (936)
++.|.+.|+ +++.|.+.+..+. .+++++++++||||||.. +-.++...... .+..+++++-.+.||
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~------~~~~rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQ------DPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhc------CCCceEEEEcCCCcc
Confidence 344445565 5677888877554 678999999999999953 33344332111 234578888888887
No 482
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=92.91 E-value=0.54 Score=49.64 Aligned_cols=19 Identities=37% Similarity=0.324 Sum_probs=16.1
Q ss_pred CcEEEEecCCCCcchhchH
Q psy7557 114 HDMIGIAQTGTGKTFAFLL 132 (936)
Q Consensus 114 ~d~l~~apTGsGKT~~~~l 132 (936)
.++++.||+|+|||..+-.
T Consensus 43 ~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred ceEEEEcCCCCCHHHHHHH
Confidence 5789999999999987643
No 483
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=92.90 E-value=0.29 Score=55.82 Aligned_cols=110 Identities=14% Similarity=0.115 Sum_probs=56.7
Q ss_pred CcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhccCCCCEEEEEeCCccchHHH
Q psy7557 114 HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQL 193 (936)
Q Consensus 114 ~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 193 (936)
+.+++.|++|+|||.. +-++.+.... ...+.+++|+.+ .++..++...+..- .
T Consensus 142 npl~i~G~~G~GKTHL--l~Ai~~~l~~-----~~~~~~v~yv~~-~~f~~~~~~~l~~~------------~------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHL--LKAAKNYIES-----NFSDLKVSYMSG-DEFARKAVDILQKT------------H------- 194 (450)
T ss_pred CceEEECCCCCcHHHH--HHHHHHHHHH-----hCCCCeEEEEEH-HHHHHHHHHHHHHh------------h-------
Confidence 3588999999999953 2233222111 123456666554 56666555554320 0
Q ss_pred HHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcC-CCHHHHHHHHhhc-CCCCcEEEEEeccchHH
Q psy7557 194 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDL-GFEPQINKTSIYI-NPNRQTVMTSATWNKDV 268 (936)
Q Consensus 194 ~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~-~~~~~~~~i~~~~-~~~~q~~~~SAT~~~~~ 268 (936)
+.+..+.. .+.++++|||||+|.+... .....+..++..+ ..+.|+++.|-..|...
T Consensus 195 --------------~~~~~~~~----~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 195 --------------KEIEQFKN----EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred --------------hHHHHHHH----HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 00111111 1456789999999977532 1223344444333 33456655555544333
No 484
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=92.87 E-value=0.79 Score=42.28 Aligned_cols=17 Identities=18% Similarity=0.393 Sum_probs=13.7
Q ss_pred CceEEEEcccchhccCC
Q psy7557 743 AVSFVVLDEADRMLDLG 759 (936)
Q Consensus 743 ~i~~lViDEah~l~~~~ 759 (936)
.-.+++|||+|.+....
T Consensus 58 ~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 58 KPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp TSEEEEEETGGGTSHHC
T ss_pred cceeeeeccchhccccc
Confidence 34799999999987654
No 485
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=92.85 E-value=0.14 Score=52.43 Aligned_cols=48 Identities=10% Similarity=0.215 Sum_probs=29.7
Q ss_pred CCCceEEEEccchhhhcCC-CHHHHHHHHhhc-CCCCcEEEEEeccchHH
Q psy7557 221 LKAVSFVVLDEADRMLDLG-FEPQINKTSIYI-NPNRQTVMTSATWNKDV 268 (936)
Q Consensus 221 ~~~~~~lViDEah~l~~~~-~~~~~~~i~~~~-~~~~q~~~~SAT~~~~~ 268 (936)
+...++|+||.+|.+.... ....+-.++..+ ..+.++++.|...|..+
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 4578999999999886432 223333343333 34667777777777554
No 486
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.83 E-value=0.28 Score=52.15 Aligned_cols=41 Identities=32% Similarity=0.193 Sum_probs=25.9
Q ss_pred hhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEec
Q psy7557 630 LMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAP 678 (936)
Q Consensus 630 ~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~P 678 (936)
+..|.-+++.|++|+|||....--+.... . ..+..++|+.-
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~-~-------~~g~~vl~iS~ 67 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLI-T-------QHGVRVGTISL 67 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHH-H-------hcCceEEEEEc
Confidence 34677889999999999964332222211 1 22667888864
No 487
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=92.77 E-value=0.67 Score=53.27 Aligned_cols=48 Identities=10% Similarity=0.094 Sum_probs=27.3
Q ss_pred CcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHH
Q psy7557 634 HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIERE 689 (936)
Q Consensus 634 ~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~ 689 (936)
+.+++.||+|+|||..... +...+.. ..++.+++++ +..++..++...
T Consensus 149 ~~l~l~G~~G~GKThL~~a-i~~~~~~------~~~~~~v~yi-~~~~~~~~~~~~ 196 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHA-IGNYILE------KNPNAKVVYV-TSEKFTNDFVNA 196 (450)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHH------hCCCCeEEEE-EHHHHHHHHHHH
Confidence 4689999999999964332 2222221 1235567776 445554444333
No 488
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=92.77 E-value=2.3 Score=50.55 Aligned_cols=148 Identities=21% Similarity=0.259 Sum_probs=87.2
Q ss_pred HHHhCCCCCCcHHHHHHHHHHhcCC--cEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHH
Q psy7557 90 QLENLSFTTPSPIQAQAWPILMSGH--DMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIE 167 (936)
Q Consensus 90 ~l~~~g~~~~~~~Q~~ai~~~~~g~--d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~ 167 (936)
.+.....+.+..-|.+.+..++.++ -+++.|.-|=|||.+.-+.+...... .....++|.+|+.+=++.+.
T Consensus 206 ~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~-------~~~~~iiVTAP~~~nv~~Lf 278 (758)
T COG1444 206 ELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARL-------AGSVRIIVTAPTPANVQTLF 278 (758)
T ss_pred HHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHh-------cCCceEEEeCCCHHHHHHHH
Confidence 3555555555555556666666543 46777999999999887765322211 11468999999999877776
Q ss_pred HHHHh-ccCCCCEEEEEeCC-ccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHH
Q psy7557 168 REVNK-IDYKGLKAVCVYGG-KEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQIN 245 (936)
Q Consensus 168 ~~~~~-~~~~~~~~~~~~gg-~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~ 245 (936)
+.+.+ +...|.+-...... ...... -.....|=+-+|.... ..-+++|||||=-+ -.+.+.
T Consensus 279 ~fa~~~l~~lg~~~~v~~d~~g~~~~~---~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaI----plplL~ 341 (758)
T COG1444 279 EFAGKGLEFLGYKRKVAPDALGEIREV---SGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAI----PLPLLH 341 (758)
T ss_pred HHHHHhHHHhCCccccccccccceeee---cCCceeEEeeCcchhc----------ccCCEEEEehhhcC----ChHHHH
Confidence 65544 43334332221111 000000 0011345566665431 12689999999865 356666
Q ss_pred HHHhhcCCCCcEEEEEeccc
Q psy7557 246 KTSIYINPNRQTVMTSATWN 265 (936)
Q Consensus 246 ~i~~~~~~~~q~~~~SAT~~ 265 (936)
++.... +.++||.|+.
T Consensus 342 ~l~~~~----~rv~~sTTIh 357 (758)
T COG1444 342 KLLRRF----PRVLFSTTIH 357 (758)
T ss_pred HHHhhc----CceEEEeeec
Confidence 666543 5589999985
No 489
>PF13173 AAA_14: AAA domain
Probab=92.73 E-value=0.88 Score=42.03 Aligned_cols=38 Identities=18% Similarity=0.332 Sum_probs=24.6
Q ss_pred CceEEEEccchhhhcCCCHHHHHHHHhhcCCCCcEEEEEec
Q psy7557 223 AVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSAT 263 (936)
Q Consensus 223 ~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT 263 (936)
.-.+++|||+|.+-+ +...+..+.... ++.++++.+..
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEccc
Confidence 567899999999854 456666665543 44565554443
No 490
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.73 E-value=1.3 Score=46.61 Aligned_cols=130 Identities=16% Similarity=0.214 Sum_probs=68.9
Q ss_pred cCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEec-CH--HHHHHHHHHHHhccCCCCEEEEEECCcc
Q psy7557 632 SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAP-TR--ELATQIEREVNKIDYKGLKAVCVYGGKE 708 (936)
Q Consensus 632 ~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~P-t~--~La~Q~~~~~~~~~~~~~~~~~~~gg~~ 708 (936)
.+..+.+++|+|+|||..+..-+.... ..+.++.++.- +. +.+.|+......+ ++
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~---------~~~~~v~~i~~D~~ri~~~~ql~~~~~~~---~~---------- 131 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFH---------GKKKTVGFITTDHSRIGTVQQLQDYVKTI---GF---------- 131 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHH---------HcCCeEEEEecCCCCHHHHHHHHHHhhhc---Cc----------
Confidence 456889999999999986654332211 12344444432 32 3444444333221 22
Q ss_pred chHHHHHHhcCceEEE-eCchHHHHHHHcCCCCCCCceEEEEcccchhccC-CCHHHHHHHhhhcCCCceEEEEEecCC-
Q psy7557 709 LEPQLEKIREGCHILI-ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDL-GFEPQINKTSIYINPNRQTVMTSATWN- 785 (936)
Q Consensus 709 ~~~~~~~l~~~~~IiV-~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~-~~~~~~~~i~~~~~~~~q~v~~SAT~~- 785 (936)
.+.. .+|..+.+.+..-. ...+.++++||-+=+.... .....+..+.....+..-++.+|||..
T Consensus 132 ------------~~~~~~~~~~l~~~l~~l~-~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~ 198 (270)
T PRK06731 132 ------------EVIAVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS 198 (270)
T ss_pred ------------eEEecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH
Confidence 2222 34555544443211 1245789999988765321 122233344444455555778999864
Q ss_pred hHHHHHHHHhc
Q psy7557 786 KDVQRVAKKYM 796 (936)
Q Consensus 786 ~~~~~~~~~~~ 796 (936)
.+....++.|-
T Consensus 199 ~d~~~~~~~f~ 209 (270)
T PRK06731 199 KDMIEIITNFK 209 (270)
T ss_pred HHHHHHHHHhC
Confidence 46667777764
No 491
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=92.72 E-value=0.25 Score=50.55 Aligned_cols=107 Identities=15% Similarity=0.287 Sum_probs=57.7
Q ss_pred cEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhccCCCCEEEEEECCccchHHHH
Q psy7557 635 DMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLE 714 (936)
Q Consensus 635 d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 714 (936)
-+++.||+|+|||- ++-++...... ..++.+++|+.. .+....+...++.
T Consensus 36 ~l~l~G~~G~GKTH--LL~Ai~~~~~~-----~~~~~~v~y~~~-~~f~~~~~~~~~~---------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTH--LLQAIANEAQK-----QHPGKRVVYLSA-EEFIREFADALRD---------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHH--HHHHHHHHHHH-----HCTTS-EEEEEH-HHHHHHHHHHHHT----------------------
T ss_pred ceEEECCCCCCHHH--HHHHHHHHHHh-----ccccccceeecH-HHHHHHHHHHHHc----------------------
Confidence 48999999999997 33333222111 134667777753 3444443333332
Q ss_pred HHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCC-CHHHHHHHhhhc-CCCceEEEEEecCChHH
Q psy7557 715 KIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLG-FEPQINKTSIYI-NPNRQTVMTSATWNKDV 788 (936)
Q Consensus 715 ~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~-~~~~~~~i~~~~-~~~~q~v~~SAT~~~~~ 788 (936)
...+.+.+ .+...++++||..|.+.... ....+-.+...+ ..+.++|+.|...|..+
T Consensus 86 ----------~~~~~~~~-------~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 86 ----------GEIEEFKD-------RLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp ----------TSHHHHHH-------HHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred ----------ccchhhhh-------hhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 01122222 14567899999999876432 222333333333 35668877777766543
No 492
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=92.66 E-value=0.29 Score=56.99 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=27.6
Q ss_pred CCCceEEEEcccchhccCC-CHHHHHHHhhhc-CCCceEEEEEecCChHH
Q psy7557 741 LKAVSFVVLDEADRMLDLG-FEPQINKTSIYI-NPNRQTVMTSATWNKDV 788 (936)
Q Consensus 741 ~~~i~~lViDEah~l~~~~-~~~~~~~i~~~~-~~~~q~v~~SAT~~~~~ 788 (936)
+.++++||||++|.+.... ....+-.++..+ ..+.++|+.|-..|..+
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL 424 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQL 424 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhh
Confidence 4457899999999875432 122233333333 34567777665555444
No 493
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.62 E-value=0.39 Score=51.55 Aligned_cols=66 Identities=20% Similarity=0.235 Sum_probs=42.8
Q ss_pred HHHHHhCCCCCCcHHHHHHHHHHh-cCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHH
Q psy7557 88 LRQLENLSFTTPSPIQAQAWPILM-SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTREL 162 (936)
Q Consensus 88 ~~~l~~~g~~~~~~~Q~~ai~~~~-~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~L 162 (936)
++.+.+.|. +++.|.+.+..+. .+++++++|+||||||... -.++..+... ....+++++-.+.||
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~------~~~~ri~tiEd~~El 174 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKN------DPTDRVVIIEDTREL 174 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhcc------CCCceEEEECCchhh
Confidence 445555564 4566666666544 5679999999999999842 3333333110 124578888888887
No 494
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.61 E-value=1.2 Score=47.15 Aligned_cols=55 Identities=20% Similarity=0.364 Sum_probs=29.6
Q ss_pred CCceEEEEcccchhcc-CCCHHHHHHHhhhcC------CCceEEEEEecCChHHHHHHHHhc
Q psy7557 742 KAVSFVVLDEADRMLD-LGFEPQINKTSIYIN------PNRQTVMTSATWNKDVQRVAKKYM 796 (936)
Q Consensus 742 ~~i~~lViDEah~l~~-~~~~~~~~~i~~~~~------~~~q~v~~SAT~~~~~~~~~~~~~ 796 (936)
+..++|+||=+-++.. ......+..+....+ +.--++.++||...+....+..+.
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~ 214 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFN 214 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHH
Confidence 3456777776655431 112233444444433 555678888887655555555544
No 495
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=92.53 E-value=0.35 Score=54.71 Aligned_cols=133 Identities=13% Similarity=0.218 Sum_probs=72.8
Q ss_pred EEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHH-HHHHHHHHHHhc-cCCCCEEEEEeCCccchHHH
Q psy7557 116 MIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRE-LATQIEREVNKI-DYKGLKAVCVYGGKEIEPQL 193 (936)
Q Consensus 116 ~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~-La~Q~~~~~~~~-~~~~~~~~~~~gg~~~~~~~ 193 (936)
.++.|..|||||.+..+-++..+... ..+.+++++.|+.. |..-+...+... ...++....-....+. .
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~------~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~---~ 74 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAIN------KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM---E 74 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhc------CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc---E
Confidence 57789999999998887777666542 14578999999966 655566666542 2223321111111100 0
Q ss_pred HHhhc-CCcEEEeCC-chhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHHHhhcC--CCCcEEEEEeccch
Q psy7557 194 EKIRE-GCHILIATP-GRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYIN--PNRQTVMTSATWNK 266 (936)
Q Consensus 194 ~~~~~-~~~Iiv~Tp-~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~--~~~q~~~~SAT~~~ 266 (936)
..... |..|++..- +...+ +. ....+.++.+|||..+... .+..+...++ .....+.+|.+++.
T Consensus 75 i~~~~~g~~i~f~g~~d~~~~-ik----~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 75 IKILNTGKKFIFKGLNDKPNK-LK----SGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPES 142 (396)
T ss_pred EEecCCCeEEEeecccCChhH-hh----CcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCC
Confidence 01112 345555443 22211 11 2234689999999987543 3333333333 22224788888764
No 496
>PF13173 AAA_14: AAA domain
Probab=92.51 E-value=0.86 Score=42.07 Aligned_cols=38 Identities=16% Similarity=0.292 Sum_probs=25.6
Q ss_pred CceEEEEcccchhccCCCHHHHHHHhhhcCCCceEEEEEec
Q psy7557 743 AVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSAT 783 (936)
Q Consensus 743 ~i~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~v~~SAT 783 (936)
.-.+|+|||+|.+- ++...+..+.... ++.++++.+..
T Consensus 61 ~~~~i~iDEiq~~~--~~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP--DWEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhc--cHHHHHHHHHHhc-cCceEEEEccc
Confidence 45689999999875 3566666666644 45666655544
No 497
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=92.48 E-value=0.33 Score=52.38 Aligned_cols=63 Identities=16% Similarity=0.142 Sum_probs=41.4
Q ss_pred HHhCCCCCCcHHHHHHHHhhh-cCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHH
Q psy7557 611 LENLSFTTPSPIQAQAWPILM-SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTREL 682 (936)
Q Consensus 611 l~~~g~~~p~~iQ~~ai~~~l-~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~L 682 (936)
+...|. +++.|...+..+. .+.+++++++||||||... -.++..+... .++.+++.+-.+.||
T Consensus 123 lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~------~~~~rivtiEd~~El 186 (323)
T PRK13833 123 YVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVAS------APEDRLVILEDTAEI 186 (323)
T ss_pred HHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcC------CCCceEEEecCCccc
Confidence 344454 5677887776655 5679999999999999742 2333333111 134578888888887
No 498
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=92.47 E-value=0.88 Score=51.91 Aligned_cols=49 Identities=12% Similarity=0.191 Sum_probs=26.6
Q ss_pred CceEEEEcccchhccCC-CHHHHHHHhhh-cCCCceEEEEEecCChHHHHH
Q psy7557 743 AVSFVVLDEADRMLDLG-FEPQINKTSIY-INPNRQTVMTSATWNKDVQRV 791 (936)
Q Consensus 743 ~i~~lViDEah~l~~~~-~~~~~~~i~~~-~~~~~q~v~~SAT~~~~~~~~ 791 (936)
..++|+|||+|.+.+.. ....+..++.. ...+.++++.|...|..+..+
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l 244 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEF 244 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHH
Confidence 46799999999876532 12223233222 233456666555555554444
No 499
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=92.46 E-value=0.31 Score=56.71 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=28.3
Q ss_pred CCCceEEEEccchhhhcCC-CHHHHHHHHhhc-CCCCcEEEEEeccchHH
Q psy7557 221 LKAVSFVVLDEADRMLDLG-FEPQINKTSIYI-NPNRQTVMTSATWNKDV 268 (936)
Q Consensus 221 ~~~~~~lViDEah~l~~~~-~~~~~~~i~~~~-~~~~q~~~~SAT~~~~~ 268 (936)
+.++++||||++|.+.... ....+-.++..+ ..+.++|+.|-..|..+
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL 424 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQL 424 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhh
Confidence 4467899999999875432 223333444433 33567776555555444
No 500
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=92.46 E-value=0.24 Score=59.84 Aligned_cols=69 Identities=19% Similarity=0.142 Sum_probs=51.0
Q ss_pred CCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc
Q psy7557 618 TPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693 (936)
Q Consensus 618 ~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 693 (936)
.++|-|.+|+.. ....+++.|..|||||.+..--+ .++..+. .-+..++|+++.|+..|.++.+++.++
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ri-a~Li~~~----~v~p~~IL~lTFT~kAA~em~~Rl~~~ 70 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKI-AHLIRGC----GYQARHIAAVTFTNKAAREMKERVAQT 70 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHH-HHHHHhc----CCCHHHeeeEechHHHHHHHHHHHHHH
Confidence 478999999875 34689999999999998744333 3333211 123457999999999999999998875
Done!