Query psy7557
Match_columns 936
No_of_seqs 768 out of 5509
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 21:27:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7557.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7557hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f92_B U5 small nuclear ribonu 100.0 1.9E-84 6.6E-89 832.0 57.1 821 95-936 76-1293(1724)
2 2db3_A ATP-dependent RNA helic 100.0 2.7E-63 9.2E-68 566.5 44.7 379 68-452 49-431 (434)
3 2i4i_A ATP-dependent RNA helic 100.0 2.3E-57 7.8E-62 518.3 41.1 382 68-452 8-406 (417)
4 2db3_A ATP-dependent RNA helic 100.0 5.8E-57 2E-61 514.2 42.3 342 589-936 50-394 (434)
5 2j0s_A ATP-dependent RNA helic 100.0 3.2E-55 1.1E-59 499.1 38.0 370 70-449 32-403 (410)
6 3eiq_A Eukaryotic initiation f 100.0 6E-54 2.1E-58 489.5 34.4 372 68-449 33-407 (414)
7 1s2m_A Putative ATP-dependent 100.0 5.5E-53 1.9E-57 479.1 38.7 367 72-449 18-385 (400)
8 2i4i_A ATP-dependent RNA helic 100.0 2.4E-52 8.4E-57 476.6 40.0 345 589-936 9-370 (417)
9 1xti_A Probable ATP-dependent 100.0 1.3E-52 4.5E-57 474.6 37.1 366 75-449 8-378 (391)
10 3sqw_A ATP-dependent RNA helic 100.0 2E-52 6.7E-57 495.3 38.2 366 74-442 19-411 (579)
11 3i5x_A ATP-dependent RNA helic 100.0 4.8E-52 1.6E-56 492.3 40.4 365 75-442 71-462 (563)
12 3fht_A ATP-dependent RNA helic 100.0 4.9E-52 1.7E-56 473.5 37.2 362 70-444 20-395 (412)
13 1hv8_A Putative ATP-dependent 100.0 4.3E-51 1.5E-55 458.0 38.6 354 75-445 6-361 (367)
14 2j0s_A ATP-dependent RNA helic 100.0 4E-51 1.4E-55 465.3 38.3 336 591-936 33-370 (410)
15 3fmp_B ATP-dependent RNA helic 100.0 4.6E-53 1.6E-57 490.4 20.4 358 72-442 89-460 (479)
16 3pey_A ATP-dependent RNA helic 100.0 4.2E-51 1.4E-55 463.0 35.6 356 73-442 3-370 (395)
17 1fuu_A Yeast initiation factor 100.0 1.4E-52 4.6E-57 475.0 21.2 368 70-448 16-385 (394)
18 1xti_A Probable ATP-dependent 100.0 3.2E-49 1.1E-53 446.8 38.4 333 595-936 8-344 (391)
19 3eiq_A Eukaryotic initiation f 100.0 1E-49 3.5E-54 454.5 34.6 338 589-936 34-374 (414)
20 1s2m_A Putative ATP-dependent 100.0 6.3E-49 2.1E-53 445.7 38.5 333 593-936 19-352 (400)
21 2v1x_A ATP-dependent DNA helic 100.0 6.1E-50 2.1E-54 468.3 30.1 340 81-438 26-383 (591)
22 2z0m_A 337AA long hypothetical 100.0 3.2E-49 1.1E-53 437.3 33.7 334 83-442 1-335 (337)
23 3fht_A ATP-dependent RNA helic 100.0 1E-48 3.5E-53 446.0 36.9 332 592-936 22-366 (412)
24 3sqw_A ATP-dependent RNA helic 100.0 8.3E-49 2.8E-53 464.2 35.5 339 595-936 17-385 (579)
25 3i5x_A ATP-dependent RNA helic 100.0 2.3E-48 7.9E-53 460.7 37.2 338 596-936 69-436 (563)
26 3pey_A ATP-dependent RNA helic 100.0 2.9E-48 9.7E-53 439.7 35.6 329 594-936 4-343 (395)
27 3fmp_B ATP-dependent RNA helic 100.0 6.3E-50 2.2E-54 464.1 19.9 332 592-936 89-433 (479)
28 1hv8_A Putative ATP-dependent 100.0 2.7E-47 9.1E-52 427.2 38.0 325 595-936 6-332 (367)
29 3fho_A ATP-dependent RNA helic 100.0 2.1E-49 7.1E-54 460.6 20.0 365 70-448 114-490 (508)
30 1oyw_A RECQ helicase, ATP-depe 100.0 2.4E-48 8.4E-53 450.9 28.9 340 76-439 3-353 (523)
31 1fuu_A Yeast initiation factor 100.0 8.2E-49 2.8E-53 444.0 21.3 335 591-936 17-353 (394)
32 3oiy_A Reverse gyrase helicase 100.0 1E-47 3.4E-52 437.3 23.8 326 86-442 9-376 (414)
33 2v1x_A ATP-dependent DNA helic 100.0 2.2E-46 7.5E-51 438.3 33.0 317 601-936 26-361 (591)
34 2z0m_A 337AA long hypothetical 100.0 1E-45 3.6E-50 409.0 33.4 309 603-936 1-310 (337)
35 1tf5_A Preprotein translocase 100.0 2.5E-46 8.7E-51 434.6 25.8 381 13-431 16-547 (844)
36 1oyw_A RECQ helicase, ATP-depe 100.0 4.4E-45 1.5E-49 423.6 29.7 317 596-936 3-330 (523)
37 3fho_A ATP-dependent RNA helic 100.0 3.8E-46 1.3E-50 433.1 19.0 323 601-936 124-457 (508)
38 2zj8_A DNA helicase, putative 100.0 1.9E-45 6.5E-50 446.4 24.7 332 76-430 2-388 (720)
39 2va8_A SSO2462, SKI2-type heli 100.0 8.8E-45 3E-49 441.0 29.8 332 75-430 8-409 (715)
40 2p6r_A Afuhel308 helicase; pro 100.0 2E-45 6.9E-50 444.9 23.6 331 76-430 2-389 (702)
41 3l9o_A ATP-dependent RNA helic 100.0 1.1E-45 3.7E-50 459.0 20.8 324 82-429 168-597 (1108)
42 3oiy_A Reverse gyrase helicase 100.0 9.6E-45 3.3E-49 412.7 24.2 302 606-936 9-348 (414)
43 4ddu_A Reverse gyrase; topoiso 100.0 4E-44 1.4E-48 444.8 25.9 326 88-442 68-503 (1104)
44 2fsf_A Preprotein translocase 100.0 4.4E-45 1.5E-49 422.6 15.4 378 15-431 9-585 (853)
45 2ykg_A Probable ATP-dependent 100.0 4.4E-44 1.5E-48 435.3 22.4 343 89-437 4-524 (696)
46 4a2p_A RIG-I, retinoic acid in 100.0 1E-43 3.5E-48 421.3 24.8 333 95-434 4-513 (556)
47 2xgj_A ATP-dependent RNA helic 100.0 1.4E-42 4.8E-47 427.4 33.1 313 91-429 80-499 (1010)
48 2va8_A SSO2462, SKI2-type heli 100.0 1.5E-42 5.3E-47 421.3 31.2 322 595-936 8-393 (715)
49 2zj8_A DNA helicase, putative 100.0 3.8E-43 1.3E-47 426.3 25.7 317 597-936 3-372 (720)
50 3tbk_A RIG-I helicase domain; 100.0 7.7E-43 2.6E-47 413.8 26.7 329 98-435 4-513 (555)
51 3l9o_A ATP-dependent RNA helic 100.0 1.2E-43 4.1E-48 440.7 20.4 310 603-936 169-582 (1108)
52 2p6r_A Afuhel308 helicase; pro 100.0 2.7E-43 9.2E-48 426.3 23.0 317 596-936 2-373 (702)
53 4a2q_A RIG-I, retinoic acid in 100.0 2.5E-42 8.7E-47 423.0 27.5 334 93-433 243-753 (797)
54 1gku_B Reverse gyrase, TOP-RG; 100.0 1.4E-43 4.9E-48 440.8 16.3 325 87-443 46-468 (1054)
55 4ddu_A Reverse gyrase; topoiso 100.0 2.1E-42 7.1E-47 429.4 25.6 280 613-921 74-388 (1104)
56 1tf5_A Preprotein translocase 100.0 4.8E-42 1.7E-46 398.8 26.0 359 540-936 23-532 (844)
57 1nkt_A Preprotein translocase 100.0 6.1E-42 2.1E-46 396.3 26.3 377 16-431 44-619 (922)
58 1gm5_A RECG; helicase, replica 100.0 1.5E-42 5.2E-47 413.4 19.3 347 87-461 358-727 (780)
59 4f92_B U5 small nuclear ribonu 100.0 2.8E-41 9.7E-46 433.3 29.4 341 83-437 911-1316(1724)
60 2eyq_A TRCF, transcription-rep 100.0 3.2E-41 1.1E-45 421.8 29.1 383 83-492 588-989 (1151)
61 4a2p_A RIG-I, retinoic acid in 100.0 2E-41 6.7E-46 401.7 25.8 316 615-936 4-496 (556)
62 4a4z_A Antiviral helicase SKI2 100.0 5.7E-41 1.9E-45 413.3 28.9 310 93-427 35-490 (997)
63 2ykg_A Probable ATP-dependent 100.0 5.6E-42 1.9E-46 416.8 19.6 324 608-936 3-504 (696)
64 4a2w_A RIG-I, retinoic acid in 100.0 3.9E-41 1.3E-45 415.9 26.8 335 93-433 243-753 (936)
65 2xgj_A ATP-dependent RNA helic 100.0 3.9E-40 1.3E-44 405.7 32.0 300 611-936 80-484 (1010)
66 4a2q_A RIG-I, retinoic acid in 100.0 1.7E-40 5.9E-45 406.7 26.1 318 613-936 243-737 (797)
67 3tbk_A RIG-I helicase domain; 100.0 6.8E-41 2.3E-45 397.1 21.9 311 618-936 4-495 (555)
68 4gl2_A Interferon-induced heli 100.0 7.6E-42 2.6E-46 415.8 12.9 325 98-429 7-518 (699)
69 1wp9_A ATP-dependent RNA helic 100.0 9E-40 3.1E-44 381.1 27.8 324 98-432 9-478 (494)
70 1gku_B Reverse gyrase, TOP-RG; 100.0 5.9E-41 2E-45 417.3 15.5 282 607-920 46-352 (1054)
71 2fsf_A Preprotein translocase 100.0 2.5E-40 8.5E-45 383.0 19.3 306 614-936 71-570 (853)
72 4a4z_A Antiviral helicase SKI2 100.0 2.2E-39 7.4E-44 399.3 27.7 299 613-936 35-477 (997)
73 2whx_A Serine protease/ntpase/ 100.0 2E-41 6.7E-46 397.4 8.0 320 83-449 157-501 (618)
74 4a2w_A RIG-I, retinoic acid in 100.0 2.4E-39 8.1E-44 400.0 25.4 318 613-936 243-737 (936)
75 4gl2_A Interferon-induced heli 100.0 2E-40 7E-45 403.2 13.2 315 618-935 7-507 (699)
76 2jlq_A Serine protease subunit 100.0 4.3E-40 1.5E-44 375.6 13.5 288 95-429 1-311 (451)
77 1nkt_A Preprotein translocase 100.0 1.4E-38 4.7E-43 368.4 26.1 308 613-936 107-604 (922)
78 1wp9_A ATP-dependent RNA helic 100.0 1E-37 3.6E-42 363.7 29.2 309 618-936 9-463 (494)
79 1yks_A Genome polyprotein [con 100.0 2.2E-40 7.4E-45 376.1 6.3 286 109-449 4-322 (440)
80 2wv9_A Flavivirin protease NS2 100.0 1.7E-40 5.7E-45 391.5 4.1 301 90-444 202-551 (673)
81 2oca_A DAR protein, ATP-depend 100.0 9.2E-39 3.2E-43 373.6 18.3 313 96-427 111-453 (510)
82 1gm5_A RECG; helicase, replica 100.0 2E-38 6.7E-43 378.0 20.7 304 607-936 358-684 (780)
83 3fe2_A Probable ATP-dependent 100.0 2.2E-37 7.5E-42 324.0 25.2 238 36-288 3-241 (242)
84 2xau_A PRE-mRNA-splicing facto 100.0 8.8E-39 3E-43 384.4 13.3 336 72-431 69-445 (773)
85 3o8b_A HCV NS3 protease/helica 100.0 2.2E-39 7.7E-44 374.7 7.4 287 99-442 218-531 (666)
86 3iuy_A Probable ATP-dependent 100.0 5.6E-37 1.9E-41 318.1 23.9 217 67-283 11-227 (228)
87 2eyq_A TRCF, transcription-rep 100.0 4.3E-36 1.5E-40 375.6 33.5 306 604-936 589-909 (1151)
88 3fe2_A Probable ATP-dependent 100.0 3.2E-36 1.1E-40 315.1 25.7 238 556-808 3-241 (242)
89 2jlq_A Serine protease subunit 100.0 7.9E-38 2.7E-42 356.9 14.3 275 615-936 1-297 (451)
90 3iuy_A Probable ATP-dependent 100.0 2.4E-36 8.3E-41 313.3 24.1 217 587-803 11-227 (228)
91 2oca_A DAR protein, ATP-depend 100.0 8.8E-37 3E-41 356.8 19.6 301 617-936 112-442 (510)
92 2whx_A Serine protease/ntpase/ 100.0 4.3E-38 1.5E-42 369.1 7.8 287 603-936 157-464 (618)
93 2fwr_A DNA repair protein RAD2 100.0 2.6E-37 8.9E-42 357.6 14.2 294 98-430 93-455 (472)
94 2z83_A Helicase/nucleoside tri 100.0 6E-38 2.1E-42 358.4 8.4 273 107-429 15-313 (459)
95 2v6i_A RNA helicase; membrane, 100.0 2.1E-36 7.2E-41 342.7 18.2 269 112-426 1-288 (431)
96 2wv9_A Flavivirin protease NS2 100.0 1.1E-37 3.7E-42 367.6 3.2 272 610-936 202-519 (673)
97 2xau_A PRE-mRNA-splicing facto 100.0 1.6E-35 5.3E-40 356.2 20.6 322 593-936 70-431 (773)
98 2fwr_A DNA repair protein RAD2 100.0 4.5E-36 1.5E-40 347.2 14.6 280 618-936 93-438 (472)
99 3o8b_A HCV NS3 protease/helica 100.0 2.3E-36 7.7E-41 349.7 10.5 262 619-935 218-502 (666)
100 1yks_A Genome polyprotein [con 100.0 5.1E-37 1.7E-41 348.4 4.3 254 629-936 4-285 (440)
101 3fmo_B ATP-dependent RNA helic 100.0 1.4E-34 4.9E-39 311.1 21.3 204 72-285 89-298 (300)
102 3rc3_A ATP-dependent RNA helic 100.0 6.9E-35 2.3E-39 342.3 20.0 275 107-427 149-443 (677)
103 3h1t_A Type I site-specific re 100.0 8.3E-35 2.8E-39 345.6 20.0 314 98-427 178-556 (590)
104 3bor_A Human initiation factor 100.0 3.5E-34 1.2E-38 298.5 19.4 211 68-285 23-235 (237)
105 2v6i_A RNA helicase; membrane, 100.0 2.8E-34 9.5E-39 325.3 19.8 259 632-936 1-277 (431)
106 3ber_A Probable ATP-dependent 100.0 8.4E-34 2.9E-38 297.2 21.9 208 71-285 39-248 (249)
107 1wrb_A DJVLGB; RNA helicase, D 100.0 5.6E-34 1.9E-38 300.5 20.6 216 72-288 20-243 (253)
108 2oxc_A Probable ATP-dependent 100.0 1.4E-33 4.7E-38 292.7 22.6 208 69-284 18-228 (230)
109 2z83_A Helicase/nucleoside tri 100.0 6.4E-35 2.2E-39 333.4 13.5 260 627-936 15-299 (459)
110 1q0u_A Bstdead; DEAD protein, 100.0 5.2E-34 1.8E-38 293.7 18.8 207 73-286 2-213 (219)
111 3jux_A Protein translocase sub 100.0 5.2E-33 1.8E-37 314.4 27.6 376 16-431 11-589 (822)
112 1vec_A ATP-dependent RNA helic 100.0 3.7E-33 1.3E-37 284.7 24.0 200 76-282 4-205 (206)
113 3fmo_B ATP-dependent RNA helic 100.0 1.2E-33 4.1E-38 303.8 21.1 204 592-805 89-298 (300)
114 3dkp_A Probable ATP-dependent 100.0 2.3E-33 8E-38 294.3 22.3 230 40-287 3-243 (245)
115 2pl3_A Probable ATP-dependent 100.0 7.3E-33 2.5E-37 288.7 25.4 211 71-285 21-233 (236)
116 3h1t_A Type I site-specific re 100.0 1E-33 3.5E-38 336.2 20.4 304 618-936 178-543 (590)
117 3ber_A Probable ATP-dependent 100.0 3.7E-33 1.3E-37 292.4 21.9 208 591-805 39-248 (249)
118 3bor_A Human initiation factor 100.0 2E-33 7E-38 292.7 19.6 210 589-805 24-235 (237)
119 1vec_A ATP-dependent RNA helic 100.0 1.1E-32 3.8E-37 281.1 24.2 200 596-802 4-205 (206)
120 1qde_A EIF4A, translation init 100.0 6.2E-33 2.1E-37 287.0 22.5 210 69-286 8-218 (224)
121 2oxc_A Probable ATP-dependent 100.0 5E-33 1.7E-37 288.4 21.9 208 589-804 18-228 (230)
122 1q0u_A Bstdead; DEAD protein, 100.0 1.9E-33 6.3E-38 289.5 18.1 206 594-806 3-213 (219)
123 1wrb_A DJVLGB; RNA helicase, D 100.0 4.9E-33 1.7E-37 293.3 21.2 215 593-808 21-243 (253)
124 2gxq_A Heat resistant RNA depe 100.0 1.4E-32 4.7E-37 280.7 23.6 205 76-285 2-206 (207)
125 3ly5_A ATP-dependent RNA helic 100.0 1.1E-32 3.8E-37 291.1 21.0 196 83-280 61-258 (262)
126 1qde_A EIF4A, translation init 100.0 2.1E-32 7.1E-37 283.0 22.5 210 589-806 8-218 (224)
127 2gxq_A Heat resistant RNA depe 100.0 4.4E-32 1.5E-36 277.0 24.0 204 596-804 2-205 (207)
128 2pl3_A Probable ATP-dependent 100.0 4.4E-32 1.5E-36 282.9 23.6 212 591-806 21-234 (236)
129 3dkp_A Probable ATP-dependent 100.0 2.5E-32 8.6E-37 286.5 21.5 214 589-807 19-243 (245)
130 3rc3_A ATP-dependent RNA helic 100.0 6.2E-33 2.1E-37 325.7 18.4 281 606-936 132-429 (677)
131 1t6n_A Probable ATP-dependent 100.0 2.8E-32 9.7E-37 281.1 20.5 205 72-283 11-219 (220)
132 3ly5_A ATP-dependent RNA helic 100.0 4.3E-32 1.5E-36 286.5 21.3 196 603-800 61-258 (262)
133 1t6n_A Probable ATP-dependent 100.0 1.1E-31 3.8E-36 276.7 20.6 203 594-803 13-219 (220)
134 3dmq_A RNA polymerase-associat 100.0 3.6E-32 1.2E-36 336.2 17.0 334 97-443 152-627 (968)
135 1z63_A Helicase of the SNF2/RA 100.0 3.2E-30 1.1E-34 300.5 26.2 311 98-430 37-454 (500)
136 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 3.7E-30 1.2E-34 314.6 20.1 312 98-427 271-707 (1038)
137 3dmq_A RNA polymerase-associat 100.0 2.8E-30 9.6E-35 319.3 17.9 306 618-936 153-600 (968)
138 3jux_A Protein translocase sub 100.0 2.1E-28 7.3E-33 276.9 29.5 304 614-936 72-574 (822)
139 1z63_A Helicase of the SNF2/RA 100.0 6.5E-29 2.2E-33 289.4 25.4 298 618-936 37-438 (500)
140 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 2.5E-29 8.5E-34 307.3 20.8 301 618-936 271-692 (1038)
141 2ipc_A Preprotein translocase 100.0 1.7E-27 5.9E-32 274.3 27.1 319 93-430 75-699 (997)
142 1c4o_A DNA nucleotide excision 100.0 8.9E-28 3E-32 284.8 21.4 178 253-440 379-561 (664)
143 2p6n_A ATP-dependent RNA helic 99.9 1.5E-27 5E-32 237.8 16.1 176 273-452 9-185 (191)
144 3mwy_W Chromo domain-containin 99.9 1.3E-26 4.5E-31 282.7 27.4 319 98-430 236-685 (800)
145 1z3i_X Similar to RAD54-like; 99.9 5.7E-26 2E-30 270.0 29.3 324 98-430 55-529 (644)
146 2d7d_A Uvrabc system protein B 99.9 1.6E-26 5.6E-31 273.9 23.9 177 253-439 385-566 (661)
147 2jgn_A DBX, DDX3, ATP-dependen 99.9 1.5E-26 5E-31 229.7 16.3 162 290-452 15-176 (185)
148 3mwy_W Chromo domain-containin 99.9 1.2E-25 4.1E-30 274.3 26.7 306 618-936 236-669 (800)
149 2hjv_A ATP-dependent RNA helic 99.9 6.9E-26 2.3E-30 220.6 17.8 150 292-443 7-156 (163)
150 1z3i_X Similar to RAD54-like; 99.9 5.2E-25 1.8E-29 261.7 29.2 311 618-936 55-513 (644)
151 1fuk_A Eukaryotic initiation f 99.9 9.7E-26 3.3E-30 220.1 18.2 154 294-449 3-157 (165)
152 1c4o_A DNA nucleotide excision 99.9 2.5E-25 8.7E-30 263.8 22.5 155 773-936 379-538 (664)
153 2ipc_A Preprotein translocase 99.9 3.4E-24 1.2E-28 247.2 30.2 129 614-756 76-215 (997)
154 2rb4_A ATP-dependent RNA helic 99.9 1.3E-25 4.5E-30 221.5 16.0 151 292-444 5-162 (175)
155 1t5i_A C_terminal domain of A 99.9 8.5E-26 2.9E-30 221.6 12.7 154 292-447 3-157 (172)
156 3eaq_A Heat resistant RNA depe 99.9 7.2E-25 2.5E-29 222.8 15.2 148 295-444 6-153 (212)
157 2d7d_A Uvrabc system protein B 99.9 4E-24 1.4E-28 253.4 22.8 155 773-936 385-544 (661)
158 3i32_A Heat resistant RNA depe 99.9 3.6E-24 1.2E-28 227.6 15.9 149 294-444 2-150 (300)
159 2yjt_D ATP-dependent RNA helic 99.8 3.9E-25 1.3E-29 216.8 0.0 147 294-442 3-150 (170)
160 2p6n_A ATP-dependent RNA helic 99.9 1E-22 3.4E-27 202.8 14.6 140 793-936 9-148 (191)
161 3b6e_A Interferon-induced heli 99.9 3.5E-23 1.2E-27 212.4 9.9 167 94-263 29-216 (216)
162 2hjv_A ATP-dependent RNA helic 99.9 5.4E-22 1.8E-26 193.0 17.2 123 812-936 7-129 (163)
163 3b6e_A Interferon-induced heli 99.9 5.3E-23 1.8E-27 211.1 10.2 167 614-783 29-216 (216)
164 1t5i_A C_terminal domain of A 99.9 3.7E-22 1.3E-26 195.6 15.5 122 813-936 4-125 (172)
165 2rb4_A ATP-dependent RNA helic 99.9 1E-21 3.4E-26 193.6 15.8 123 812-936 5-134 (175)
166 1fuk_A Eukaryotic initiation f 99.9 1.6E-21 5.4E-26 190.2 15.5 121 814-936 3-124 (165)
167 2jgn_A DBX, DDX3, ATP-dependen 99.9 1.1E-21 3.9E-26 194.4 14.4 126 810-936 15-140 (185)
168 3llm_A ATP-dependent RNA helic 99.9 1.3E-21 4.5E-26 202.8 14.4 182 84-280 47-232 (235)
169 3llm_A ATP-dependent RNA helic 99.9 3.7E-21 1.3E-25 199.5 15.2 181 605-800 48-232 (235)
170 3eaq_A Heat resistant RNA depe 99.9 4.6E-21 1.6E-25 194.7 15.5 120 815-936 6-125 (212)
171 2vl7_A XPD; helicase, unknown 99.8 9.8E-21 3.4E-25 220.2 18.7 127 94-236 4-188 (540)
172 3i32_A Heat resistant RNA depe 99.8 1.6E-20 5.3E-25 199.6 15.3 120 815-936 3-122 (300)
173 2vl7_A XPD; helicase, unknown 99.8 1.7E-20 6E-25 218.1 14.1 127 614-756 4-188 (540)
174 1rif_A DAR protein, DNA helica 99.8 2.4E-20 8.4E-25 199.2 11.1 153 98-268 113-266 (282)
175 3crv_A XPD/RAD3 related DNA he 99.8 2E-18 6.7E-23 201.7 26.2 285 95-401 1-473 (551)
176 2yjt_D ATP-dependent RNA helic 99.7 1.6E-21 5.6E-26 191.0 0.0 120 815-936 4-124 (170)
177 1rif_A DAR protein, DNA helica 99.8 4.7E-20 1.6E-24 197.0 10.6 154 618-789 113-267 (282)
178 3crv_A XPD/RAD3 related DNA he 99.8 2.5E-17 8.4E-22 192.4 26.5 284 615-921 1-473 (551)
179 2fz4_A DNA repair protein RAD2 99.7 5.6E-18 1.9E-22 175.0 13.8 137 98-266 93-230 (237)
180 2fz4_A DNA repair protein RAD2 99.7 1.1E-17 3.6E-22 173.0 14.9 138 618-787 93-231 (237)
181 1z5z_A Helicase of the SNF2/RA 99.7 4.1E-17 1.4E-21 171.3 13.9 129 302-430 92-225 (271)
182 4a15_A XPD helicase, ATP-depen 99.6 2.3E-15 7.8E-20 176.8 18.5 81 98-186 3-88 (620)
183 1z5z_A Helicase of the SNF2/RA 99.6 1.2E-15 4E-20 160.3 12.0 115 822-936 92-209 (271)
184 4a15_A XPD helicase, ATP-depen 99.5 8.2E-14 2.8E-18 163.6 18.9 81 618-706 3-88 (620)
185 1w36_D RECD, exodeoxyribonucle 98.7 2.2E-08 7.7E-13 117.4 8.9 145 100-263 151-298 (608)
186 1w36_D RECD, exodeoxyribonucle 98.6 4.5E-08 1.6E-12 114.8 9.0 145 620-783 151-298 (608)
187 3e1s_A Exodeoxyribonuclease V, 97.8 9.4E-05 3.2E-09 85.7 12.4 125 98-261 189-313 (574)
188 3e1s_A Exodeoxyribonuclease V, 97.7 0.00015 5E-09 84.1 12.8 126 618-782 189-314 (574)
189 4b3f_X DNA-binding protein smu 97.7 5.5E-05 1.9E-09 89.7 9.5 67 98-173 189-256 (646)
190 2gk6_A Regulator of nonsense t 97.7 0.0002 6.9E-09 84.3 13.3 69 97-173 179-247 (624)
191 2gk6_A Regulator of nonsense t 97.7 0.00019 6.5E-09 84.6 13.0 70 616-693 178-247 (624)
192 4b3f_X DNA-binding protein smu 97.6 6.3E-05 2.1E-09 89.3 8.3 67 618-693 189-256 (646)
193 3upu_A ATP-dependent DNA helic 97.6 0.00023 7.9E-09 80.6 12.6 70 613-690 20-94 (459)
194 3upu_A ATP-dependent DNA helic 97.6 0.00024 8.1E-09 80.5 12.5 71 92-170 19-94 (459)
195 2xzl_A ATP-dependent helicase 97.6 0.00031 1.1E-08 84.5 13.5 69 97-173 359-427 (802)
196 2xzl_A ATP-dependent helicase 97.6 0.00034 1.1E-08 84.3 13.7 70 616-693 358-427 (802)
197 2wjy_A Regulator of nonsense t 97.5 0.00034 1.1E-08 84.1 12.6 69 97-173 355-423 (800)
198 2wjy_A Regulator of nonsense t 97.5 0.0006 2.1E-08 81.9 13.2 70 616-693 354-423 (800)
199 3lfu_A DNA helicase II; SF1 he 97.1 0.011 3.7E-07 70.3 18.5 70 97-173 8-77 (647)
200 3hgt_A HDA1 complex subunit 3; 96.7 0.0061 2.1E-07 63.7 10.8 126 303-433 106-241 (328)
201 2o0j_A Terminase, DNA packagin 96.2 0.022 7.5E-07 61.8 11.5 69 98-173 163-231 (385)
202 2o0j_A Terminase, DNA packagin 96.2 0.033 1.1E-06 60.4 12.6 69 618-693 163-231 (385)
203 3ec2_A DNA replication protein 96.1 0.0082 2.8E-07 58.1 6.9 19 112-130 37-55 (180)
204 3hgt_A HDA1 complex subunit 3; 96.0 0.023 8E-07 59.3 10.1 106 823-933 106-217 (328)
205 3ec2_A DNA replication protein 95.8 0.016 5.6E-07 55.9 7.3 32 620-651 16-56 (180)
206 3cpe_A Terminase, DNA packagin 95.7 0.081 2.8E-06 61.6 14.2 142 618-782 163-312 (592)
207 2orw_A Thymidine kinase; TMTK, 95.5 0.049 1.7E-06 52.7 9.5 40 632-680 2-41 (184)
208 3vkw_A Replicase large subunit 95.4 0.054 1.8E-06 59.5 10.6 107 635-783 163-269 (446)
209 3cpe_A Terminase, DNA packagin 95.4 0.088 3E-06 61.3 13.1 69 98-173 163-231 (592)
210 3te6_A Regulatory protein SIR3 95.4 0.025 8.4E-07 59.7 7.3 20 112-131 44-63 (318)
211 3te6_A Regulatory protein SIR3 95.3 0.037 1.3E-06 58.3 8.5 20 632-651 44-63 (318)
212 3vkw_A Replicase large subunit 95.3 0.052 1.8E-06 59.6 9.6 43 116-172 164-206 (446)
213 2orw_A Thymidine kinase; TMTK, 94.9 0.055 1.9E-06 52.3 7.8 39 113-160 3-41 (184)
214 3lfu_A DNA helicase II; SF1 he 94.8 0.038 1.3E-06 65.5 7.7 70 617-693 8-77 (647)
215 2kjq_A DNAA-related protein; s 94.7 0.014 4.6E-07 54.5 2.7 18 112-129 35-52 (149)
216 2kjq_A DNAA-related protein; s 94.5 0.022 7.7E-07 53.0 3.8 18 632-649 35-52 (149)
217 1xx6_A Thymidine kinase; NESG, 94.2 0.081 2.8E-06 51.3 7.2 39 633-680 8-46 (191)
218 1d2n_A N-ethylmaleimide-sensit 94.2 0.14 4.9E-06 52.9 9.7 18 114-131 65-82 (272)
219 1xx6_A Thymidine kinase; NESG, 94.2 0.1 3.6E-06 50.6 7.8 39 113-160 8-46 (191)
220 3kl4_A SRP54, signal recogniti 94.1 0.13 4.4E-06 56.7 9.1 54 222-275 178-234 (433)
221 3bos_A Putative DNA replicatio 94.0 0.079 2.7E-06 53.5 6.9 19 112-130 51-69 (242)
222 2b8t_A Thymidine kinase; deoxy 93.9 0.096 3.3E-06 52.2 7.0 90 632-755 11-101 (223)
223 1d2n_A N-ethylmaleimide-sensit 93.8 0.19 6.7E-06 51.9 9.7 18 634-651 65-82 (272)
224 2b8t_A Thymidine kinase; deoxy 93.8 0.043 1.5E-06 54.7 4.2 90 112-235 11-101 (223)
225 1pjr_A PCRA; DNA repair, DNA r 93.7 0.091 3.1E-06 62.8 7.7 70 97-173 10-79 (724)
226 1uaa_A REP helicase, protein ( 93.4 0.066 2.3E-06 63.6 5.8 69 98-173 2-70 (673)
227 3kl4_A SRP54, signal recogniti 93.3 0.22 7.6E-06 54.8 9.4 55 742-796 178-235 (433)
228 1pjr_A PCRA; DNA repair, DNA r 93.2 0.12 4.2E-06 61.7 7.8 70 617-693 10-79 (724)
229 2p65_A Hypothetical protein PF 93.1 0.21 7.2E-06 47.9 8.0 19 113-131 43-61 (187)
230 3u4q_A ATP-dependent helicase/ 93.1 0.12 4.2E-06 65.6 7.8 70 98-172 10-79 (1232)
231 1uaa_A REP helicase, protein ( 93.0 0.087 3E-06 62.6 6.1 69 618-693 2-70 (673)
232 1l8q_A Chromosomal replication 92.9 0.22 7.6E-06 53.0 8.6 19 633-651 37-55 (324)
233 1l8q_A Chromosomal replication 92.9 0.15 5.1E-06 54.4 7.2 18 113-130 37-54 (324)
234 2chg_A Replication factor C sm 92.9 0.69 2.4E-05 45.6 11.7 39 222-261 101-139 (226)
235 2w58_A DNAI, primosome compone 92.5 0.55 1.9E-05 45.8 10.2 18 634-651 55-72 (202)
236 2v1u_A Cell division control p 92.3 0.27 9.2E-06 53.7 8.4 19 112-130 43-61 (387)
237 3u4q_A ATP-dependent helicase/ 92.3 0.18 6E-06 64.2 7.7 70 618-692 10-79 (1232)
238 2w58_A DNAI, primosome compone 92.2 0.36 1.2E-05 47.2 8.5 17 114-130 55-71 (202)
239 2zpa_A Uncharacterized protein 92.2 0.22 7.5E-06 57.6 7.7 113 98-265 175-289 (671)
240 1jbk_A CLPB protein; beta barr 91.8 1.1 3.7E-05 42.8 11.4 18 113-130 43-60 (195)
241 2p65_A Hypothetical protein PF 91.7 0.48 1.6E-05 45.3 8.5 19 633-651 43-61 (187)
242 2z4s_A Chromosomal replication 91.6 0.43 1.5E-05 53.1 9.2 19 113-131 130-148 (440)
243 2v1u_A Cell division control p 91.6 0.38 1.3E-05 52.5 8.6 19 632-650 43-61 (387)
244 1a5t_A Delta prime, HOLB; zinc 91.6 0.55 1.9E-05 50.1 9.6 34 99-132 3-43 (334)
245 2qgz_A Helicase loader, putati 91.6 0.34 1.2E-05 51.1 7.8 19 113-131 152-170 (308)
246 3bos_A Putative DNA replicatio 91.5 0.13 4.5E-06 51.8 4.5 19 632-650 51-69 (242)
247 2qby_B CDC6 homolog 3, cell di 91.4 0.29 9.8E-06 53.5 7.4 37 746-783 136-173 (384)
248 2j9r_A Thymidine kinase; TK1, 91.3 0.24 8E-06 48.6 5.7 39 113-160 28-66 (214)
249 2z4s_A Chromosomal replication 91.2 0.63 2.2E-05 51.8 10.0 19 633-651 130-148 (440)
250 2zpa_A Uncharacterized protein 91.2 0.52 1.8E-05 54.5 9.3 112 618-784 175-288 (671)
251 1w4r_A Thymidine kinase; type 91.2 0.23 8E-06 47.8 5.4 38 113-159 20-57 (195)
252 1a5t_A Delta prime, HOLB; zinc 91.1 0.45 1.5E-05 50.8 8.3 33 619-651 3-42 (334)
253 2chg_A Replication factor C sm 91.1 1.7 5.7E-05 42.7 12.2 40 742-782 101-140 (226)
254 3dm5_A SRP54, signal recogniti 91.1 0.59 2E-05 51.4 9.2 53 223-275 182-235 (443)
255 2qby_B CDC6 homolog 3, cell di 91.0 0.33 1.1E-05 52.9 7.4 18 113-130 45-62 (384)
256 3h4m_A Proteasome-activating n 91.0 0.51 1.7E-05 49.0 8.4 19 112-130 50-68 (285)
257 2orv_A Thymidine kinase; TP4A 90.7 0.5 1.7E-05 46.8 7.4 39 113-160 19-57 (234)
258 3syl_A Protein CBBX; photosynt 90.6 0.21 7.3E-06 52.6 5.1 18 114-131 68-85 (309)
259 2j9r_A Thymidine kinase; TK1, 90.1 0.38 1.3E-05 47.1 5.9 40 633-681 28-67 (214)
260 2qby_A CDC6 homolog 1, cell di 90.1 0.81 2.8E-05 49.7 9.5 18 113-130 45-62 (386)
261 2orv_A Thymidine kinase; TP4A 89.9 1 3.5E-05 44.5 8.9 39 633-680 19-57 (234)
262 3dm5_A SRP54, signal recogniti 89.7 0.85 2.9E-05 50.2 8.9 18 634-651 101-118 (443)
263 1fnn_A CDC6P, cell division co 89.6 0.52 1.8E-05 51.4 7.4 16 115-130 46-61 (389)
264 1w4r_A Thymidine kinase; type 89.4 0.74 2.5E-05 44.3 7.2 38 633-679 20-57 (195)
265 1fnn_A CDC6P, cell division co 89.2 0.75 2.6E-05 50.1 8.4 16 635-650 46-61 (389)
266 3syl_A Protein CBBX; photosynt 89.1 0.34 1.2E-05 51.0 5.2 19 633-651 67-85 (309)
267 2qgz_A Helicase loader, putati 88.8 0.9 3.1E-05 47.8 8.2 19 633-651 152-170 (308)
268 3e2i_A Thymidine kinase; Zn-bi 88.8 0.56 1.9E-05 45.9 6.0 41 632-681 27-67 (219)
269 1g5t_A COB(I)alamin adenosyltr 88.5 1.4 4.8E-05 42.4 8.5 140 634-793 29-172 (196)
270 1g5t_A COB(I)alamin adenosyltr 88.5 0.79 2.7E-05 44.2 6.8 140 114-273 29-172 (196)
271 2qby_A CDC6 homolog 1, cell di 88.5 1.5 5E-05 47.6 10.1 18 633-650 45-62 (386)
272 3e2i_A Thymidine kinase; Zn-bi 88.0 0.71 2.4E-05 45.1 6.1 39 113-160 28-66 (219)
273 3h4m_A Proteasome-activating n 87.7 1.1 3.9E-05 46.3 8.2 19 632-650 50-68 (285)
274 3eie_A Vacuolar protein sortin 87.5 1.4 4.6E-05 46.8 8.7 19 633-651 51-69 (322)
275 3u61_B DNA polymerase accessor 87.4 0.54 1.9E-05 49.9 5.5 40 222-261 104-143 (324)
276 3eie_A Vacuolar protein sortin 87.3 2.6 8.7E-05 44.6 10.7 17 114-130 52-68 (322)
277 3u61_B DNA polymerase accessor 87.2 0.46 1.6E-05 50.5 4.7 41 742-782 104-144 (324)
278 3pfi_A Holliday junction ATP-d 86.6 1.3 4.4E-05 47.2 8.0 17 114-130 56-72 (338)
279 1iqp_A RFCS; clamp loader, ext 86.4 1.3 4.6E-05 46.7 8.0 38 222-260 109-146 (327)
280 1sxj_A Activator 1 95 kDa subu 86.4 1.4 4.9E-05 50.1 8.6 41 222-264 147-189 (516)
281 3pfi_A Holliday junction ATP-d 85.9 1.5 5.3E-05 46.6 8.1 18 634-651 56-73 (338)
282 2dr3_A UPF0273 protein PH0284; 84.9 1.5 5.2E-05 44.0 7.2 52 112-173 22-73 (247)
283 1njg_A DNA polymerase III subu 84.9 5.9 0.0002 39.1 11.6 16 115-130 47-62 (250)
284 3co5_A Putative two-component 84.0 0.62 2.1E-05 42.6 3.3 21 110-130 24-44 (143)
285 1njg_A DNA polymerase III subu 84.0 6.8 0.00023 38.6 11.6 16 635-650 47-62 (250)
286 2q6t_A DNAB replication FORK h 83.6 5.1 0.00017 44.4 11.2 40 632-679 199-238 (444)
287 2q6t_A DNAB replication FORK h 83.4 5.5 0.00019 44.2 11.4 39 112-158 199-237 (444)
288 2gno_A DNA polymerase III, gam 83.2 2.6 8.8E-05 44.1 8.1 17 115-131 20-36 (305)
289 3n70_A Transport activator; si 82.6 0.7 2.4E-05 42.3 3.1 22 110-131 21-42 (145)
290 1sxj_A Activator 1 95 kDa subu 82.6 2.3 7.7E-05 48.4 8.0 41 742-784 147-189 (516)
291 1sxj_E Activator 1 40 kDa subu 82.1 1.4 4.6E-05 47.4 5.7 42 221-263 132-173 (354)
292 1iqp_A RFCS; clamp loader, ext 82.1 2.8 9.5E-05 44.2 8.1 39 742-781 109-147 (327)
293 3pvs_A Replication-associated 81.9 1.5 5E-05 48.8 5.9 18 114-131 51-68 (447)
294 3co5_A Putative two-component 81.8 0.88 3E-05 41.6 3.4 21 630-650 24-44 (143)
295 1sxj_E Activator 1 40 kDa subu 81.4 2.1 7.2E-05 45.8 6.9 43 741-784 132-174 (354)
296 3pvs_A Replication-associated 81.3 4 0.00014 45.2 9.2 18 634-651 51-68 (447)
297 1sxj_C Activator 1 40 kDa subu 80.8 2.1 7.2E-05 45.6 6.5 38 222-260 109-146 (340)
298 3n70_A Transport activator; si 80.2 0.95 3.2E-05 41.4 3.1 21 631-651 22-42 (145)
299 2r6a_A DNAB helicase, replicat 80.2 3.5 0.00012 45.9 8.3 40 632-679 202-241 (454)
300 3hjh_A Transcription-repair-co 79.4 3.6 0.00012 46.0 7.9 63 842-916 382-444 (483)
301 2gno_A DNA polymerase III, gam 79.1 4.1 0.00014 42.5 7.9 40 741-781 80-119 (305)
302 1sxj_B Activator 1 37 kDa subu 78.6 3 0.0001 43.8 6.9 38 743-781 107-144 (323)
303 3hjh_A Transcription-repair-co 78.4 3.8 0.00013 45.7 7.8 53 112-176 13-65 (483)
304 1w5s_A Origin recognition comp 77.0 2.6 8.9E-05 46.1 6.0 17 114-130 51-69 (412)
305 2z43_A DNA repair and recombin 76.6 4.6 0.00016 42.6 7.5 58 113-173 107-165 (324)
306 1n0w_A DNA repair protein RAD5 76.4 5.7 0.0002 39.5 7.9 20 632-651 23-42 (243)
307 2r6a_A DNAB helicase, replicat 76.3 4.4 0.00015 45.1 7.6 21 112-132 202-222 (454)
308 1w5s_A Origin recognition comp 73.4 3.5 0.00012 45.1 5.8 17 634-650 51-69 (412)
309 2bjv_A PSP operon transcriptio 72.4 2.6 8.9E-05 43.0 4.2 20 111-130 27-46 (265)
310 1e9r_A Conjugal transfer prote 72.0 2.3 7.9E-05 47.1 3.9 44 632-684 52-95 (437)
311 3cmu_A Protein RECA, recombina 72.0 3.5 0.00012 53.8 5.9 43 632-683 1774-1816(2050)
312 2l8b_A Protein TRAI, DNA helic 71.8 2 7E-05 40.4 2.8 60 99-166 35-96 (189)
313 2oap_1 GSPE-2, type II secreti 71.3 3.4 0.00012 46.6 5.1 40 88-129 236-276 (511)
314 1e9r_A Conjugal transfer prote 71.1 2.2 7.4E-05 47.4 3.4 43 112-163 52-94 (437)
315 1qvr_A CLPB protein; coiled co 70.4 4.1 0.00014 49.5 5.9 19 113-131 191-209 (854)
316 4a1f_A DNAB helicase, replicat 69.9 3.4 0.00012 43.7 4.4 49 632-690 45-93 (338)
317 1p9r_A General secretion pathw 69.3 4.4 0.00015 44.4 5.3 28 622-649 154-183 (418)
318 3e70_C DPA, signal recognition 68.7 14 0.00048 38.8 8.8 54 223-276 211-265 (328)
319 2oap_1 GSPE-2, type II secreti 68.3 4.1 0.00014 46.0 4.9 39 609-649 237-276 (511)
320 1p9r_A General secretion pathw 67.9 3.1 0.00011 45.6 3.7 29 101-129 153-183 (418)
321 4b4t_M 26S protease regulatory 67.7 1.4 5E-05 48.3 1.0 56 71-130 174-232 (434)
322 3io5_A Recombination and repai 66.9 7.9 0.00027 40.3 6.2 90 635-756 30-124 (333)
323 2dr3_A UPF0273 protein PH0284; 66.3 4.5 0.00015 40.4 4.3 52 632-693 22-73 (247)
324 3e70_C DPA, signal recognition 66.2 15 0.00053 38.5 8.6 53 744-796 212-265 (328)
325 1qvr_A CLPB protein; coiled co 66.1 6.5 0.00022 47.7 6.4 19 633-651 191-209 (854)
326 1ls1_A Signal recognition part 65.6 13 0.00045 38.4 7.8 53 222-274 179-232 (295)
327 1xp8_A RECA protein, recombina 65.4 11 0.00038 40.3 7.4 123 112-268 73-214 (366)
328 3nbx_X ATPase RAVA; AAA+ ATPas 62.5 3.3 0.00011 46.5 2.6 30 101-130 29-58 (500)
329 2yhs_A FTSY, cell division pro 62.4 11 0.00039 41.8 6.8 17 114-130 294-310 (503)
330 1kgd_A CASK, peripheral plasma 62.3 2.6 8.8E-05 40.1 1.5 19 112-130 4-22 (180)
331 2gza_A Type IV secretion syste 62.1 3.1 0.00011 44.7 2.2 20 110-129 172-191 (361)
332 4a1f_A DNAB helicase, replicat 61.7 5 0.00017 42.4 3.7 38 112-158 45-82 (338)
333 2qmh_A HPR kinase/phosphorylas 61.6 2.6 9E-05 40.6 1.4 19 112-130 33-51 (205)
334 1ofh_A ATP-dependent HSL prote 61.6 9.1 0.00031 39.7 5.8 19 112-130 49-67 (310)
335 3io5_A Recombination and repai 61.5 8.6 0.00029 40.0 5.3 90 115-236 30-124 (333)
336 2i1q_A DNA repair and recombin 61.3 13 0.00044 39.0 6.9 127 112-262 97-256 (322)
337 2ffh_A Protein (FFH); SRP54, s 61.2 20 0.00068 39.2 8.4 20 113-132 98-117 (425)
338 1pzn_A RAD51, DNA repair and r 61.1 28 0.00097 36.9 9.6 20 632-651 130-149 (349)
339 3b85_A Phosphate starvation-in 60.8 6.7 0.00023 38.3 4.2 31 100-130 9-39 (208)
340 4ag6_A VIRB4 ATPase, type IV s 60.6 5.3 0.00018 43.4 3.8 42 632-682 34-75 (392)
341 4ag6_A VIRB4 ATPase, type IV s 60.3 6.5 0.00022 42.7 4.5 41 112-161 34-74 (392)
342 4akg_A Glutathione S-transfera 60.1 7.1 0.00024 52.9 5.5 47 605-652 892-942 (2695)
343 3hr8_A Protein RECA; alpha and 60.0 5.8 0.0002 42.3 3.8 91 112-236 60-152 (356)
344 3a8t_A Adenylate isopentenyltr 60.0 3.4 0.00012 43.5 2.0 18 114-131 41-58 (339)
345 1u0j_A DNA replication protein 59.9 11 0.00037 38.2 5.6 44 605-651 73-122 (267)
346 2bjv_A PSP operon transcriptio 59.9 4.8 0.00016 40.9 3.2 19 632-650 28-46 (265)
347 3foz_A TRNA delta(2)-isopenten 59.7 3 0.0001 43.3 1.4 16 116-131 13-28 (316)
348 3b85_A Phosphate starvation-in 59.7 8.8 0.0003 37.4 4.9 31 620-650 9-39 (208)
349 4b4t_M 26S protease regulatory 59.7 2.5 8.7E-05 46.3 1.0 56 591-650 174-232 (434)
350 2eyu_A Twitching motility prot 59.6 2.6 9E-05 42.9 1.0 20 110-129 22-41 (261)
351 1u0j_A DNA replication protein 59.5 11 0.00038 38.1 5.7 43 86-131 74-122 (267)
352 3vaa_A Shikimate kinase, SK; s 59.3 3.2 0.00011 40.1 1.6 20 112-131 24-43 (199)
353 3exa_A TRNA delta(2)-isopenten 59.3 3 0.0001 43.3 1.4 17 115-131 5-21 (322)
354 3iij_A Coilin-interacting nucl 59.2 2.9 9.9E-05 39.6 1.2 21 111-131 9-29 (180)
355 3hws_A ATP-dependent CLP prote 58.9 5.4 0.00019 42.8 3.5 20 112-131 50-69 (363)
356 1kgd_A CASK, peripheral plasma 58.8 3.2 0.00011 39.4 1.5 19 632-650 4-22 (180)
357 1jbk_A CLPB protein; beta barr 58.7 3.3 0.00011 39.2 1.6 18 633-650 43-60 (195)
358 2pt7_A CAG-ALFA; ATPase, prote 58.6 3.7 0.00013 43.4 2.1 19 110-128 168-186 (330)
359 3nbx_X ATPase RAVA; AAA+ ATPas 58.6 8.4 0.00029 43.2 5.0 43 607-650 16-58 (500)
360 3trf_A Shikimate kinase, SK; a 58.4 3.4 0.00012 39.3 1.6 19 113-131 5-23 (185)
361 1ls1_A Signal recognition part 58.2 20 0.00069 37.0 7.6 53 742-794 179-232 (295)
362 1qhx_A CPT, protein (chloramph 57.8 3.4 0.00012 38.9 1.5 19 113-131 3-21 (178)
363 1ojl_A Transcriptional regulat 57.6 4.8 0.00017 42.0 2.7 19 112-130 24-42 (304)
364 2l82_A Designed protein OR32; 57.2 36 0.0012 28.1 7.1 47 845-891 5-51 (162)
365 4akg_A Glutathione S-transfera 57.2 8.8 0.0003 52.0 5.6 47 85-132 892-942 (2695)
366 1lvg_A Guanylate kinase, GMP k 57.1 3.7 0.00013 39.7 1.6 19 112-130 3-21 (198)
367 2r44_A Uncharacterized protein 57.0 3.4 0.00012 43.7 1.5 23 108-130 41-63 (331)
368 2j37_W Signal recognition part 57.0 29 0.00099 38.8 9.0 17 115-131 103-119 (504)
369 2gza_A Type IV secretion syste 56.9 4.3 0.00015 43.5 2.3 20 630-649 172-191 (361)
370 3iij_A Coilin-interacting nucl 56.9 3.4 0.00012 39.1 1.3 21 631-651 9-29 (180)
371 2qmh_A HPR kinase/phosphorylas 56.7 3.8 0.00013 39.4 1.5 19 632-650 33-51 (205)
372 2xxa_A Signal recognition part 56.5 9.8 0.00033 41.8 5.0 84 636-730 103-195 (433)
373 3tau_A Guanylate kinase, GMP k 56.2 3.9 0.00013 39.9 1.6 19 112-130 7-25 (208)
374 3cf0_A Transitional endoplasmi 56.1 3.7 0.00013 42.8 1.5 19 112-130 48-66 (301)
375 3a8t_A Adenylate isopentenyltr 56.0 3.5 0.00012 43.4 1.2 18 634-651 41-58 (339)
376 3vaa_A Shikimate kinase, SK; s 55.7 4.1 0.00014 39.4 1.7 20 632-651 24-43 (199)
377 1ofh_A ATP-dependent HSL prote 55.6 13 0.00044 38.5 5.7 19 633-651 50-68 (310)
378 2ze6_A Isopentenyl transferase 55.4 3.8 0.00013 41.5 1.4 15 116-130 4-18 (253)
379 2qor_A Guanylate kinase; phosp 55.3 3.9 0.00013 39.7 1.4 23 629-651 8-30 (204)
380 3exa_A TRNA delta(2)-isopenten 55.2 3.7 0.00013 42.7 1.3 18 634-651 4-21 (322)
381 3nwn_A Kinesin-like protein KI 55.2 6.4 0.00022 41.9 3.2 24 106-129 96-121 (359)
382 3nwn_A Kinesin-like protein KI 55.2 6.1 0.00021 42.1 3.0 24 626-649 96-121 (359)
383 3trf_A Shikimate kinase, SK; a 55.0 4.2 0.00014 38.6 1.6 19 633-651 5-23 (185)
384 3hws_A ATP-dependent CLP prote 54.9 6.2 0.00021 42.3 3.1 20 632-651 50-69 (363)
385 1tue_A Replication protein E1; 54.6 10 0.00035 36.7 4.2 43 606-650 29-75 (212)
386 3foz_A TRNA delta(2)-isopenten 54.6 4.1 0.00014 42.2 1.5 17 635-651 12-28 (316)
387 4f4c_A Multidrug resistance pr 54.3 7.2 0.00025 49.7 4.0 35 221-255 1233-1267(1321)
388 1qhx_A CPT, protein (chloramph 54.0 4.3 0.00015 38.2 1.5 19 633-651 3-21 (178)
389 2j41_A Guanylate kinase; GMP, 54.0 4.2 0.00015 39.3 1.5 20 111-130 4-23 (207)
390 2l8b_A Protein TRAI, DNA helic 53.9 9.9 0.00034 35.8 3.8 122 619-783 35-158 (189)
391 1bg2_A Kinesin; motor protein, 53.9 6.8 0.00023 41.1 3.1 25 106-130 69-95 (325)
392 3b9p_A CG5977-PA, isoform A; A 53.9 4.2 0.00014 42.2 1.5 18 113-130 54-71 (297)
393 1ex7_A Guanylate kinase; subst 53.8 4.8 0.00017 38.4 1.8 16 114-129 2-17 (186)
394 2qz4_A Paraplegin; AAA+, SPG7, 53.5 4.4 0.00015 41.0 1.6 18 113-130 39-56 (262)
395 3dc4_A Kinesin-like protein NO 53.3 6.5 0.00022 41.6 2.8 24 106-129 86-111 (344)
396 2pt7_A CAG-ALFA; ATPase, prote 53.3 5.2 0.00018 42.3 2.1 18 631-648 169-186 (330)
397 3ney_A 55 kDa erythrocyte memb 53.3 4.5 0.00016 39.0 1.5 19 112-130 18-36 (197)
398 3lw7_A Adenylate kinase relate 53.2 4.3 0.00015 37.9 1.4 17 115-131 3-19 (179)
399 2eyu_A Twitching motility prot 53.0 4.7 0.00016 41.0 1.7 20 630-649 22-41 (261)
400 3uk6_A RUVB-like 2; hexameric 53.0 4.6 0.00016 43.4 1.7 19 113-131 70-88 (368)
401 1y63_A LMAJ004144AAA protein; 52.8 4.8 0.00016 38.3 1.6 20 112-131 9-28 (184)
402 2r44_A Uncharacterized protein 52.8 4.3 0.00015 42.9 1.3 23 628-650 41-63 (331)
403 1ojl_A Transcriptional regulat 52.7 6.4 0.00022 41.1 2.7 20 632-651 24-43 (304)
404 3tau_A Guanylate kinase, GMP k 52.7 4.9 0.00017 39.2 1.7 20 632-651 7-26 (208)
405 2qor_A Guanylate kinase; phosp 52.7 5.1 0.00017 38.8 1.8 21 110-130 9-29 (204)
406 3b6u_A Kinesin-like protein KI 52.2 7.6 0.00026 41.5 3.2 24 106-129 93-118 (372)
407 3cf0_A Transitional endoplasmi 52.2 4.7 0.00016 42.0 1.5 20 632-651 48-67 (301)
408 1bg2_A Kinesin; motor protein, 52.1 7.2 0.00024 40.9 2.9 24 627-650 70-95 (325)
409 1lv7_A FTSH; alpha/beta domain 52.0 4.6 0.00016 40.8 1.4 17 114-130 46-62 (257)
410 1zp6_A Hypothetical protein AT 51.9 3.8 0.00013 39.1 0.7 19 111-129 7-25 (191)
411 1t5c_A CENP-E protein, centrom 51.9 7.7 0.00026 41.1 3.1 25 106-130 69-95 (349)
412 2ffh_A Protein (FFH); SRP54, s 51.7 36 0.0012 37.1 8.5 19 633-651 98-116 (425)
413 1kag_A SKI, shikimate kinase I 51.7 5.4 0.00018 37.3 1.8 18 113-130 4-21 (173)
414 3dc4_A Kinesin-like protein NO 51.4 6.9 0.00024 41.4 2.6 23 627-649 87-111 (344)
415 1lvg_A Guanylate kinase, GMP k 51.4 5.1 0.00017 38.7 1.6 19 632-650 3-21 (198)
416 3gk5_A Uncharacterized rhodane 51.4 18 0.00063 30.6 5.0 46 311-357 45-90 (108)
417 2y65_A Kinesin, kinesin heavy 51.4 7.8 0.00027 41.4 3.1 23 107-129 77-101 (365)
418 2h58_A Kinesin-like protein KI 51.3 7.6 0.00026 40.8 3.0 26 105-130 71-98 (330)
419 3b9p_A CG5977-PA, isoform A; A 51.3 4.9 0.00017 41.6 1.5 19 633-651 54-72 (297)
420 3gbj_A KIF13B protein; kinesin 51.3 7.9 0.00027 41.2 3.1 25 106-130 84-110 (354)
421 2vvg_A Kinesin-2; motor protei 51.1 7.9 0.00027 41.0 3.1 23 107-129 82-106 (350)
422 2nr8_A Kinesin-like protein KI 51.1 8.1 0.00028 41.1 3.1 24 106-129 95-120 (358)
423 1goj_A Kinesin, kinesin heavy 51.0 7.7 0.00026 41.2 3.0 23 107-129 73-97 (355)
424 2zfi_A Kinesin-like protein KI 50.8 7.9 0.00027 41.4 3.0 23 107-129 82-106 (366)
425 3crm_A TRNA delta(2)-isopenten 50.8 5.8 0.0002 41.5 1.9 17 115-131 7-23 (323)
426 1kht_A Adenylate kinase; phosp 50.8 5.3 0.00018 38.0 1.6 20 112-131 2-21 (192)
427 3p32_A Probable GTPase RV1496/ 50.7 59 0.002 34.4 10.1 17 635-651 81-97 (355)
428 1f9v_A Kinesin-like protein KA 50.7 7.8 0.00027 41.1 2.9 25 106-130 76-102 (347)
429 2qz4_A Paraplegin; AAA+, SPG7, 50.7 5.2 0.00018 40.5 1.5 19 633-651 39-57 (262)
430 3vkg_A Dynein heavy chain, cyt 50.6 12 0.00042 51.2 5.4 47 605-652 875-925 (3245)
431 1x88_A Kinesin-like protein KI 50.6 7.8 0.00027 41.3 2.9 24 106-129 80-105 (359)
432 3gk5_A Uncharacterized rhodane 50.6 20 0.00068 30.4 5.1 46 832-878 46-91 (108)
433 3b6u_A Kinesin-like protein KI 50.5 8.1 0.00028 41.3 3.0 23 627-649 94-118 (372)
434 1v8k_A Kinesin-like protein KI 50.5 8 0.00027 41.9 3.0 23 107-129 147-171 (410)
435 3cob_A Kinesin heavy chain-lik 50.4 7.2 0.00025 41.7 2.6 24 106-129 71-96 (369)
436 1tue_A Replication protein E1; 50.4 11 0.00038 36.4 3.7 42 87-130 30-75 (212)
437 4a14_A Kinesin, kinesin-like p 50.3 8.2 0.00028 40.9 3.0 25 106-130 75-101 (344)
438 3ney_A 55 kDa erythrocyte memb 50.1 5.4 0.00018 38.5 1.5 19 632-650 18-36 (197)
439 3t0q_A AGR253WP; kinesin, alph 50.1 7.7 0.00026 41.2 2.8 25 106-130 77-103 (349)
440 2ze6_A Isopentenyl transferase 50.1 5.1 0.00017 40.5 1.3 17 635-651 3-19 (253)
441 3uk6_A RUVB-like 2; hexameric 50.1 5.5 0.00019 42.8 1.7 19 633-651 70-88 (368)
442 3d3q_A TRNA delta(2)-isopenten 50.0 5.2 0.00018 42.2 1.4 16 115-130 9-24 (340)
443 1v8k_A Kinesin-like protein KI 49.8 8.4 0.00029 41.7 3.0 24 627-650 147-172 (410)
444 3lre_A Kinesin-like protein KI 49.8 8.2 0.00028 41.0 3.0 23 107-129 98-122 (355)
445 2j41_A Guanylate kinase; GMP, 49.8 5.5 0.00019 38.5 1.5 21 631-651 4-24 (207)
446 3lw7_A Adenylate kinase relate 49.8 5.3 0.00018 37.2 1.4 17 635-651 3-19 (179)
447 1t5c_A CENP-E protein, centrom 49.6 8.4 0.00029 40.9 3.0 24 627-650 70-95 (349)
448 2y65_A Kinesin, kinesin heavy 49.6 8.2 0.00028 41.2 2.9 23 627-649 77-101 (365)
449 4etp_A Kinesin-like protein KA 49.6 8.4 0.00029 41.8 3.0 25 106-130 132-158 (403)
450 1ex7_A Guanylate kinase; subst 49.6 5.8 0.0002 37.9 1.6 16 634-649 2-17 (186)
451 2ewv_A Twitching motility prot 49.5 4.5 0.00015 43.6 0.9 20 110-129 133-152 (372)
452 4b4t_J 26S protease regulatory 49.5 5.6 0.00019 43.0 1.6 55 72-130 142-199 (405)
453 1f9v_A Kinesin-like protein KA 49.5 8.5 0.00029 40.8 3.0 25 626-650 76-102 (347)
454 2vvg_A Kinesin-2; motor protei 49.4 8.3 0.00028 40.9 2.9 24 627-650 82-107 (350)
455 2nr8_A Kinesin-like protein KI 49.4 8.6 0.0003 40.9 3.0 24 626-649 95-120 (358)
456 3t0q_A AGR253WP; kinesin, alph 49.3 8.3 0.00028 40.9 2.9 25 626-650 77-103 (349)
457 3gbj_A KIF13B protein; kinesin 49.3 8.7 0.0003 40.8 3.0 25 626-650 84-110 (354)
458 1xwi_A SKD1 protein; VPS4B, AA 49.3 5.5 0.00019 42.0 1.5 17 114-130 46-62 (322)
459 3tr0_A Guanylate kinase, GMP k 49.2 5.9 0.0002 38.2 1.6 19 112-130 6-24 (205)
460 1x88_A Kinesin-like protein KI 49.1 8.4 0.00029 41.1 2.9 24 626-649 80-105 (359)
461 1z6g_A Guanylate kinase; struc 49.1 6.3 0.00022 38.7 1.8 19 111-129 21-39 (218)
462 3jvv_A Twitching mobility prot 49.1 5 0.00017 42.9 1.2 18 112-129 122-139 (356)
463 2wbe_C Bipolar kinesin KRP-130 49.0 8.3 0.00028 41.3 2.8 23 107-129 93-117 (373)
464 4a14_A Kinesin, kinesin-like p 48.9 8.4 0.00029 40.8 2.8 23 627-649 76-100 (344)
465 2z43_A DNA repair and recombin 48.9 16 0.00054 38.4 5.1 59 632-693 106-165 (324)
466 1lv7_A FTSH; alpha/beta domain 48.8 5.7 0.00019 40.1 1.5 19 633-651 45-63 (257)
467 4fcw_A Chaperone protein CLPB; 48.8 6.6 0.00023 40.9 2.1 18 114-131 48-65 (311)
468 2h58_A Kinesin-like protein KI 48.8 8.5 0.00029 40.5 2.8 25 626-650 72-98 (330)
469 1goj_A Kinesin, kinesin heavy 48.8 8.3 0.00028 41.0 2.8 23 627-649 73-97 (355)
470 4b4t_H 26S protease regulatory 48.7 3.5 0.00012 45.3 -0.2 18 113-130 243-260 (467)
471 1kht_A Adenylate kinase; phosp 48.7 6.1 0.00021 37.5 1.6 20 632-651 2-21 (192)
472 3t15_A Ribulose bisphosphate c 48.6 5.7 0.00019 41.2 1.5 17 114-130 37-53 (293)
473 3lre_A Kinesin-like protein KI 48.5 8.4 0.00029 41.0 2.8 23 627-649 98-122 (355)
474 1y63_A LMAJ004144AAA protein; 48.5 6.1 0.00021 37.5 1.6 20 632-651 9-28 (184)
475 3eph_A TRNA isopentenyltransfe 48.5 5.9 0.0002 42.8 1.6 15 116-130 5-19 (409)
476 3a00_A Guanylate kinase, GMP k 48.4 6.4 0.00022 37.5 1.7 17 114-130 2-18 (186)
477 4etp_A Kinesin-like protein KA 48.4 8.9 0.00031 41.6 3.0 25 626-650 132-158 (403)
478 1kag_A SKI, shikimate kinase I 48.3 6.6 0.00023 36.7 1.8 19 633-651 4-22 (173)
479 2l82_A Designed protein OR32; 48.2 70 0.0024 26.4 7.5 103 325-449 5-107 (162)
480 3cob_A Kinesin heavy chain-lik 48.2 8 0.00027 41.3 2.5 25 626-650 71-97 (369)
481 3p32_A Probable GTPase RV1496/ 48.1 94 0.0032 32.8 11.1 16 115-130 81-96 (355)
482 3u06_A Protein claret segregat 48.1 8.3 0.00028 41.9 2.7 25 106-130 130-156 (412)
483 1um8_A ATP-dependent CLP prote 48.1 6.4 0.00022 42.5 1.8 19 113-131 72-90 (376)
484 2heh_A KIF2C protein; kinesin, 47.9 8.9 0.0003 41.2 2.8 25 106-130 126-152 (387)
485 2zfi_A Kinesin-like protein KI 47.8 9 0.00031 40.9 2.9 23 627-649 82-106 (366)
486 1zp6_A Hypothetical protein AT 47.8 5.8 0.0002 37.8 1.3 20 631-650 7-26 (191)
487 2px0_A Flagellar biosynthesis 47.4 14 0.00048 38.2 4.2 21 112-132 104-124 (296)
488 4b4t_J 26S protease regulatory 47.4 6.2 0.00021 42.7 1.5 18 633-650 182-199 (405)
489 2j37_W Signal recognition part 47.1 43 0.0015 37.4 8.4 18 634-651 102-119 (504)
490 2qp9_X Vacuolar protein sortin 47.1 6.7 0.00023 42.0 1.8 19 113-131 84-102 (355)
491 3bfn_A Kinesin-like protein KI 47.0 8.1 0.00028 41.5 2.4 23 108-130 92-116 (388)
492 3kb2_A SPBC2 prophage-derived 47.0 6.3 0.00022 36.7 1.4 17 115-131 3-19 (173)
493 1hqc_A RUVB; extended AAA-ATPa 46.7 6.5 0.00022 41.2 1.6 18 113-130 38-55 (324)
494 2wbe_C Bipolar kinesin KRP-130 46.7 9.1 0.00031 41.0 2.7 23 627-649 93-117 (373)
495 2w0m_A SSO2452; RECA, SSPF, un 46.6 10 0.00035 37.2 3.0 19 632-650 22-40 (235)
496 1ly1_A Polynucleotide kinase; 46.5 6.5 0.00022 36.9 1.4 16 115-130 4-19 (181)
497 2c9o_A RUVB-like 1; hexameric 46.5 6.5 0.00022 43.8 1.6 19 113-131 63-81 (456)
498 1xwi_A SKD1 protein; VPS4B, AA 46.4 6.5 0.00022 41.4 1.5 18 634-651 46-63 (322)
499 2w0m_A SSO2452; RECA, SSPF, un 46.4 10 0.00035 37.2 3.0 20 112-131 22-41 (235)
500 2heh_A KIF2C protein; kinesin, 46.3 9.4 0.00032 41.0 2.7 24 627-650 127-152 (387)
No 1
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.9e-84 Score=831.95 Aligned_cols=821 Identities=16% Similarity=0.189 Sum_probs=547.5
Q ss_pred CCCCCcHHHHHHHHHHh-cCCcEEEEecCCCCcchhchHHHHHHhhcCCCC--CCCCCCCEEEEEcCcHHHHHHHHHHHH
Q psy7557 95 SFTTPSPIQAQAWPILM-SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTP--ISERAGPSVLVMAPTRELATQIEREVN 171 (936)
Q Consensus 95 g~~~~~~~Q~~ai~~~~-~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~--~~~~~~~~~lil~Pt~~La~Q~~~~~~ 171 (936)
||++++++|++++|.++ +++|+++|||||||||++|.+|++..+...... .....+.++||++|+++||.|+++.++
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 89999999999999987 578999999999999999999999888654321 122457899999999999999999998
Q ss_pred h-ccCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCC--cCCCCceEEEEccchhhhcCCCHHHHHHHH
Q psy7557 172 K-IDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRAS--IDLKAVSFVVLDEADRMLDLGFEPQINKTS 248 (936)
Q Consensus 172 ~-~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~--~~~~~~~~lViDEah~l~~~~~~~~~~~i~ 248 (936)
+ +...|+++..++|+.+.... ...+++|+|+|||+|..++.+.. ..++++++|||||+|.+.+ ..+..++.++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 7 67789999999998776543 23458999999999955544432 2378999999999997766 5666665443
Q ss_pred h-------hcCCCCcEEEEEeccchHHHHHHHHhcCCCEE-EEeCCCCcccCCceEEEEEEeCchhhH-------HHHHH
Q psy7557 249 I-------YINPNRQTVMTSATWNKDVQRVAKKYMVNPVK-VNVGSLDLAATHTVTQKIIILDEDEKK-------DWLME 313 (936)
Q Consensus 249 ~-------~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~k~-------~~l~~ 313 (936)
. ..++..|+|++|||+| +..++++++..++.. +.... ....+..+.+.++........ ..+.+
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~-N~~dvA~wL~~~~~~~~~~~~-~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLP-NYEDVATFLRVDPAKGLFYFD-NSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYE 309 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCT-THHHHHHHTTCCHHHHEEECC-GGGCSSCEEEECCEECCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEecccC-CHHHHHHHhCCCCCCCeEEEC-CCCccCccEEEEeccCCcchhhhhHHHHHHHHH
Confidence 3 4578899999999998 577788776554311 11111 112345566666555443221 12233
Q ss_pred HHHhccCCCCcEEEEeCchHHHHHHHHHhhhc-------------------------------------CCceeeecCCC
Q psy7557 314 FFDNMDEERDKVMVFMGRKASVSAMSSDLACQ-------------------------------------YRKSCSLYGDL 356 (936)
Q Consensus 314 ~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~h~~~ 356 (936)
.+... ..++++||||+|++.|+.+|..|... ..+++.|||||
T Consensus 310 ~v~~~-~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL 388 (1724)
T 4f92_B 310 KIMEH-AGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGM 388 (1724)
T ss_dssp HHTTC-CSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSS
T ss_pred HHHHH-hcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCC
Confidence 33333 34679999999999999888877531 23578899999
Q ss_pred CHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEE----ecC------CCCccccccCCCCcccCCC--ceeEEE
Q psy7557 357 SQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVIN----YDF------PSHIEEYVHRVGRTGRAGK--SGESIT 424 (936)
Q Consensus 357 ~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~d~------p~s~~~y~qr~GRagR~g~--~g~~~~ 424 (936)
++.+|..+++.|++|.++|||||+++++|||+|++++||. ||. |-++.+|+||+|||||+|. .|.+++
T Consensus 389 ~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii 468 (1724)
T 4f92_B 389 TRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGIL 468 (1724)
T ss_dssp CTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEE
T ss_pred CHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEE
Confidence 9999999999999999999999999999999999999995 554 4589999999999999975 599999
Q ss_pred EecccChhhHHhHHHH---------------Hh----hcC-Cccch--hhhhccccc-----------------------
Q psy7557 425 LMTRKDWSHAHEIIPI---------------LE----EGG-HESYM--IWRRDSRIA----------------------- 459 (936)
Q Consensus 425 ~~~~~~~~~~~~l~~~---------------l~----~~~-~~~~~--~~~~~~~~~----------------------- 459 (936)
++++++...+..++.- +. .+. ..... .|...+...
T Consensus 469 ~~~~~~~~~~~~ll~~~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l 548 (1724)
T 4f92_B 469 ITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLL 548 (1724)
T ss_dssp EEESTTCCHHHHHTTTCSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTC
T ss_pred EecchhHHHHHHHHcCCCcchhhccccHHHHHHHHHHHhhcCCHHHHHHHHhccHHHHHhhhChhhhccCccccccchHH
Confidence 9998876654433210 00 000 00000 000000000
Q ss_pred ------------------eeEe-ecC-C-------ceeeecccCCCcchhhhcc------------------cchhhh-h
Q psy7557 460 ------------------LHVI-LEG-G-------EEVVEEEEGGEDGMEILVG------------------VDLEVV-M 493 (936)
Q Consensus 460 ------------------~~~~-~~~-~-------~~~~~~~e~~~~~~~~~~~------------------~~l~~~-~ 493 (936)
.-.. ... + +.....++.....+..+.. .+.... .
T Consensus 549 ~~~~~~~i~~~~~~L~~~~li~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s~ef~~i~~ 628 (1724)
T 4f92_B 549 DQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITV 628 (1724)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGTTCCC
T ss_pred HHHHHHHHHHHHHHHHHCCCeeeecCCCccccchHHHHHHHhcCCHHHHHHHHhhcCCCCCHHHHHHHHhCChhhccCCc
Confidence 0000 000 0 0001111111111111110 000000 1
Q ss_pred ccchhhhHHHhhhhhcccCCCCCCCc---------------------------------------------------cHH
Q psy7557 494 EGEEEGEVAIQMINKIDLGRHIDPEP---------------------------------------------------TME 522 (936)
Q Consensus 494 ~~e~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------~~~ 522 (936)
+.++..+........+.+.++....+ ...
T Consensus 629 R~~E~~~l~~l~~~~~~~~~~~~~~~~~Kv~~Llq~~i~~~~~~~~~l~~D~~~i~~~a~ri~ra~~ei~~~~~~~~~~~ 708 (1724)
T 4f92_B 629 REEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQLAGRLMRAIFEIVLNRGWAQLTD 708 (1724)
T ss_dssp CGGGHHHHHHHHHHSSSCCCSCCSSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCcCCCCCChHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 22222222222222221111111000 123
Q ss_pred HHHhhccHHHhhhhcccCccccCCcc-------------CChhhhCCCHHHHHHHHhh-------------cCCceee--
Q psy7557 523 ELMALSDRKERDKWAREPKIIKNVYK-------------EDPEVANMTPEQVEAFRKK-------------NNDISVS-- 574 (936)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~-------------~~~~~~~-- 574 (936)
.+..++++.+.+.|....+.++.... .-....+++..+.+.+... .-.+.+.
T Consensus 709 ~~l~l~k~i~~~~w~~~~~L~q~~~i~~~~~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~g~~i~~~~~~~P~~~~~~~ 788 (1724)
T 4f92_B 709 KTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVH 788 (1724)
T ss_dssp HHHHHHHHHHHTSCTTSCGGGGSTTSCHHHHHHHHTSSCCGGGGGGCCHHHHHHHHTCSTTHHHHHHHHTTSCCEEEEEE
T ss_pred HHHHHHHHHHhCCCCCCCceecCCCCCHHHHHHHHhcCCCHHHHHhCCHHHHHHHHCCchHHHHHHHHHHHCCCceEEEE
Confidence 55678889999999988776655321 2234556777776544211 0000000
Q ss_pred -----------------------------------eecCCCC--------------------------------c-----
Q psy7557 575 -----------------------------------VVTSDGQ--------------------------------I----- 582 (936)
Q Consensus 575 -----------------------------------~~~~~~~--------------------------------~----- 582 (936)
+...++. +
T Consensus 789 ~~p~~~~~~~~~~~~~~~~~w~~~~h~~~~~~~~~v~d~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~p~~~~i~ 868 (1724)
T 4f92_B 789 LQPITRSTLKVELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFIR 868 (1724)
T ss_dssp EEESSSSEEEEEEEEEECSCCCTTTTTTEEEEEEEEECTTSCBEEEEEEEEEEGGGTTSCEEEEEEEECCSSCCSEEEEE
T ss_pred EEecCCceEEEEEEEeeccccchhhcCCceeEEEEEEecCCCeEEEEEEEEeeeeccCCceEEEEEEECCCCCCCeEEEE
Confidence 0000000 0
Q ss_pred ---C-----------CCCCCCCCCCcCChHHhhc--------CCHHHHHHHHhCCCCCCcHHHHHHHHhhhc-CCcEEEE
Q psy7557 583 ---D-----------ENPDFQIPNPVTSFKQAFQ--------HYPEILRQLENLSFTTPSPIQAQAWPILMS-GHDMIGI 639 (936)
Q Consensus 583 ---~-----------~~~~~~~p~~~~~f~~~~~--------l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~-g~d~i~~ 639 (936)
+ .....-+|.....+.++++ +.++..+.+...+|++|+|+|+++++.++. ++|++++
T Consensus 869 ~~sd~w~~~~~~~~~~~~~~~~p~~~~~~t~lldl~plp~s~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~ 948 (1724)
T 4f92_B 869 VVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVG 948 (1724)
T ss_dssp EEESSSTTCEEEEEEECTTCCCCCCCCCCCCCCCCCCCBGGGSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEE
T ss_pred EEEccccCCCceeeeccccccCCCCCCCCCccccCCCCCcccccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEE
Confidence 0 0001112222222222222 335678888889999999999999999985 5789999
Q ss_pred ecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHh-cc-CCCCEEEEEECCccchHHHHHHh
Q psy7557 640 AQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK-ID-YKGLKAVCVYGGKELEPQLEKIR 717 (936)
Q Consensus 640 apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~-~~-~~~~~~~~~~gg~~~~~~~~~l~ 717 (936)
||||||||++|.+|++..+.. ..+.++||++|+++||.|+++.+++ ++ ..++++..++|+...+.. ..
T Consensus 949 APTGSGKTliaelail~~l~~-------~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~ 1018 (1724)
T 4f92_B 949 APTGSGKTICAEFAILRMLLQ-------SSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LL 1018 (1724)
T ss_dssp CCTTSCCHHHHHHHHHHHHHH-------CTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HH
T ss_pred eCCCCCchHHHHHHHHHHHHh-------CCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchh---hc
Confidence 999999999999999988754 3467899999999999999999976 54 358889888887654322 23
Q ss_pred cCceEEEeCchHHHHHHHcCCC--CCCCceEEEEcccchhccCCCHHHHHHH-------hhhcCCCceEEEEEecCChHH
Q psy7557 718 EGCHILIATPGRLNDFVSRASI--DLKAVSFVVLDEADRMLDLGFEPQINKT-------SIYINPNRQTVMTSATWNKDV 788 (936)
Q Consensus 718 ~~~~IiV~Tp~~l~~~l~~~~~--~~~~i~~lViDEah~l~~~~~~~~~~~i-------~~~~~~~~q~v~~SAT~~~~~ 788 (936)
.+++|+|||||+|..+++++.. .++++++||+||+|++.+. .+..++.+ ....+++.|+|++|||++ +.
T Consensus 1019 ~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~-N~ 1096 (1724)
T 4f92_B 1019 GKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE-NGPVLEVICSRMRYISSQIERPIRIVALSSSLS-NA 1096 (1724)
T ss_dssp HHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBT-TH
T ss_pred CCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCC-CH
Confidence 4589999999999888876543 4789999999999988764 45544433 334567899999999996 67
Q ss_pred HHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhH-------HHHHHHHHhccCCCCcEEEEcCChHHHHHHHHH
Q psy7557 789 QRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKK-------DWLMEFFDNMDEERDKVMVFMGRKASVSAMSSD 861 (936)
Q Consensus 789 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~-------~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~ 861 (936)
.+++.|+..++..+..-... ..+..+...+......... ..+...+... ...+++||||+|++.|+.++..
T Consensus 1097 ~dla~WL~~~~~~~~~~~~~-~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~lVF~~sR~~~~~~A~~ 1174 (1724)
T 4f92_B 1097 KDVAHWLGCSATSTFNFHPN-VRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKH-SPKKPVIVFVPSRKQTRLTAID 1174 (1724)
T ss_dssp HHHHHHHTCCSTTEEECCGG-GCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHH-CSSSCEEEEESSHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCeEEeCCC-CCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHh-cCCCCeeeeCCCHHHHHHHHHH
Confidence 88999886554332221111 1122233333333322211 1223333443 5678999999999999998877
Q ss_pred HHh----------------------------------cCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCC
Q psy7557 862 LAC----------------------------------QYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLD 907 (936)
Q Consensus 862 L~~----------------------------------~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gid 907 (936)
|.. ...+++.|||+|++.+|..+++.|++|.++|||||+++++|||
T Consensus 1175 L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVn 1254 (1724)
T 4f92_B 1175 ILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMN 1254 (1724)
T ss_dssp HHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCC
T ss_pred HHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCC
Confidence 642 1346899999999999999999999999999999999999999
Q ss_pred CCCCCEEEE----cc------CCCChhhhHhhhhhccCC
Q psy7557 908 VPDLTHVIN----YD------FPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 908 ip~v~~VI~----~d------~p~s~~~yiqr~GRaGR~ 936 (936)
+|++.+||. || .|.+..+|+||+|||||.
T Consensus 1255 lPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~ 1293 (1724)
T 4f92_B 1255 VAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRP 1293 (1724)
T ss_dssp CCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCT
T ss_pred CCccEEEEecCccccCcccccCCCCHHHHHHhhccccCC
Confidence 999999994 32 367899999999999994
No 2
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=2.7e-63 Score=566.48 Aligned_cols=379 Identities=39% Similarity=0.624 Sum_probs=348.3
Q ss_pred CCCCCcccChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCC
Q psy7557 68 FQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISE 147 (936)
Q Consensus 68 ~~~p~p~~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~ 147 (936)
.+.|.|+.+|++ +++++.++++|.++||.+|||+|.+|||.+++|+|++++||||||||++|++|++.++...... ..
T Consensus 49 ~~~p~~~~~f~~-~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~-~~ 126 (434)
T 2db3_A 49 SDVPQPIQHFTS-ADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE-LE 126 (434)
T ss_dssp SSCCCCCCCGGG-SCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC-CC
T ss_pred CCCCCCcCChhh-cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccc-cc
Confidence 467899999998 6999999999999999999999999999999999999999999999999999999888654321 12
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHhcc-CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceE
Q psy7557 148 RAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSF 226 (936)
Q Consensus 148 ~~~~~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~ 226 (936)
..++++||++|||+||.|+++.++++. ..++++..++||.....+...+..+++|+|+||++|.+++.++...++++++
T Consensus 127 ~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~ 206 (434)
T 2db3_A 127 LGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRF 206 (434)
T ss_dssp TTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCE
T ss_pred cCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCe
Confidence 457899999999999999999999975 4578899999999998888888889999999999999999988888999999
Q ss_pred EEEccchhhhcCCCHHHHHHHHhhc--CCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCc
Q psy7557 227 VVLDEADRMLDLGFEPQINKTSIYI--NPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDE 304 (936)
Q Consensus 227 lViDEah~l~~~~~~~~~~~i~~~~--~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 304 (936)
+|+||||+|+++||...+..+...+ ++++|+++||||+|+.+..++..++.++..+.++... .....+.+.+..+..
T Consensus 207 lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~-~~~~~i~~~~~~~~~ 285 (434)
T 2db3_A 207 VVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVG-GACSDVKQTIYEVNK 285 (434)
T ss_dssp EEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTT-CCCTTEEEEEEECCG
T ss_pred EEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEecccc-ccccccceEEEEeCc
Confidence 9999999999999999999998875 6789999999999999999999999999998887655 345678898999999
Q ss_pred hhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEeccccc
Q psy7557 305 DEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASR 384 (936)
Q Consensus 305 ~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~ 384 (936)
..|...+.+++... ..++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++
T Consensus 286 ~~k~~~l~~~l~~~---~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~r 362 (434)
T 2db3_A 286 YAKRSKLIEILSEQ---ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASR 362 (434)
T ss_dssp GGHHHHHHHHHHHC---CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTS
T ss_pred HHHHHHHHHHHHhC---CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhC
Confidence 99999999988875 345999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEecc-cChhhHHhHHHHHhhcCCccchhh
Q psy7557 385 GLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTR-KDWSHAHEIIPILEEGGHESYMIW 452 (936)
Q Consensus 385 GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~ 452 (936)
|+|+|++++||+||+|.+..+|+||+|||||.|+.|.|++|+++ ++...+.++.++++.+++++|...
T Consensus 363 GlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l 431 (434)
T 2db3_A 363 GLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFL 431 (434)
T ss_dssp SCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGG
T ss_pred CCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999995 578899999999999999998643
No 3
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.3e-57 Score=518.26 Aligned_cols=382 Identities=38% Similarity=0.625 Sum_probs=341.3
Q ss_pred CCCCCcccChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCC---
Q psy7557 68 FQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTP--- 144 (936)
Q Consensus 68 ~~~p~p~~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~--- 144 (936)
.++|.|+.+|++ +++++.++++|...||.+|+|+|.++||.+++|+|++++||||||||++|++|++..+......
T Consensus 8 ~~~p~~~~~f~~-~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~ 86 (417)
T 2i4i_A 8 NNCPPHIESFSD-VEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEAL 86 (417)
T ss_dssp TTCCCCCSSGGG-SCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHH
T ss_pred CcCCcccCCHhh-CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchh
Confidence 467999999999 6999999999999999999999999999999999999999999999999999999887543210
Q ss_pred ---------CCCCCCCEEEEEcCcHHHHHHHHHHHHhcc-CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHH
Q psy7557 145 ---------ISERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFV 214 (936)
Q Consensus 145 ---------~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l 214 (936)
.....++++||++||++||.|+++.++++. ..++++..++||.....+...+..+++|+|+||++|.+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l 166 (417)
T 2i4i_A 87 RAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMM 166 (417)
T ss_dssp HHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHH
T ss_pred hccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHH
Confidence 011235789999999999999999999974 4678999999999988888888888999999999999999
Q ss_pred HcCCcCCCCceEEEEccchhhhcCCCHHHHHHHHhh--cCC--CCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcc
Q psy7557 215 SRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIY--INP--NRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLA 290 (936)
Q Consensus 215 ~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~--~~~--~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~ 290 (936)
..+.+.+.++++||+||||++.+++|...+..+... +++ ..|++++|||+++.+..++..++.++..+.+.... .
T Consensus 167 ~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~ 245 (417)
T 2i4i_A 167 ERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-S 245 (417)
T ss_dssp HTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC-----
T ss_pred HcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCC-C
Confidence 988888999999999999999999999999999875 332 68999999999999999999999999888776544 3
Q ss_pred cCCceEEEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhc
Q psy7557 291 ATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITS 370 (936)
Q Consensus 291 ~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~ 370 (936)
....+.+.+..+....+...+.+++... ...+++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++
T Consensus 246 ~~~~i~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 324 (417)
T 2i4i_A 246 TSENITQKVVWVEESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 324 (417)
T ss_dssp CCSSEEEEEEECCGGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred CccCceEEEEEeccHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHc
Confidence 4566788888888889999999988875 457899999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHhhcCCccch
Q psy7557 371 GYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEGGHESYM 450 (936)
Q Consensus 371 g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 450 (936)
|+.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|+.|.|++|+++.|...+..+.+.+...++++|.
T Consensus 325 g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 404 (417)
T 2i4i_A 325 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPS 404 (417)
T ss_dssp TSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCH
T ss_pred CCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhcCcCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred hh
Q psy7557 451 IW 452 (936)
Q Consensus 451 ~~ 452 (936)
..
T Consensus 405 ~l 406 (417)
T 2i4i_A 405 WL 406 (417)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 4
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=5.8e-57 Score=514.22 Aligned_cols=342 Identities=41% Similarity=0.645 Sum_probs=313.2
Q ss_pred CCCCCcCChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccC
Q psy7557 589 QIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISER 668 (936)
Q Consensus 589 ~~p~~~~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~ 668 (936)
..|.|+.+|++ +++++.++++|+++||.+|+|+|.++||.+++|+|++++||||||||++|++|++.++...... ...
T Consensus 50 ~~p~~~~~f~~-~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~-~~~ 127 (434)
T 2db3_A 50 DVPQPIQHFTS-ADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE-LEL 127 (434)
T ss_dssp SCCCCCCCGGG-SCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC-CCT
T ss_pred CCCCCcCChhh-cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccc-ccc
Confidence 56889999998 6899999999999999999999999999999999999999999999999999999887654321 224
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhcc-CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEE
Q psy7557 669 AGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFV 747 (936)
Q Consensus 669 ~~~~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~l 747 (936)
.++++||++|||+||.|+++.++++. ..++++..++||.....+...+..+++|+|+||++|.+++.++...+++++++
T Consensus 128 ~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~l 207 (434)
T 2db3_A 128 GRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFV 207 (434)
T ss_dssp TCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEE
T ss_pred CCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeE
Confidence 57899999999999999999999985 45688899999999888888888899999999999999999988889999999
Q ss_pred EEcccchhccCCCHHHHHHHhhhc--CCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcc
Q psy7557 748 VLDEADRMLDLGFEPQINKTSIYI--NPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDED 825 (936)
Q Consensus 748 ViDEah~l~~~~~~~~~~~i~~~~--~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 825 (936)
|+||||+|++++|...+..+...+ ++.+|+++||||+|..+..++..++.++..+.++... .....+.+.+..+...
T Consensus 208 VlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~-~~~~~i~~~~~~~~~~ 286 (434)
T 2db3_A 208 VLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVG-GACSDVKQTIYEVNKY 286 (434)
T ss_dssp EEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTT-CCCTTEEEEEEECCGG
T ss_pred EEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEecccc-ccccccceEEEEeCcH
Confidence 999999999999999999998875 6789999999999999999999999999998887654 3445678888888889
Q ss_pred hhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccC
Q psy7557 826 EKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRG 905 (936)
Q Consensus 826 ~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~G 905 (936)
.|...+.+++.... .++||||++++.|+.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|
T Consensus 287 ~k~~~l~~~l~~~~---~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rG 363 (434)
T 2db3_A 287 AKRSKLIEILSEQA---DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRG 363 (434)
T ss_dssp GHHHHHHHHHHHCC---TTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSS
T ss_pred HHHHHHHHHHHhCC---CCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCC
Confidence 99999999888752 349999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 906 LDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 906 idip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
+|+|++++||+||+|.+..+|+||+|||||+
T Consensus 364 lDi~~v~~VI~~d~p~~~~~y~qriGR~gR~ 394 (434)
T 2db3_A 364 LDIKNIKHVINYDMPSKIDDYVHRIGRTGRV 394 (434)
T ss_dssp CCCTTCCEEEESSCCSSHHHHHHHHTTSSCT
T ss_pred CCcccCCEEEEECCCCCHHHHHHHhcccccC
Confidence 9999999999999999999999999999995
No 5
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=3.2e-55 Score=499.07 Aligned_cols=370 Identities=31% Similarity=0.541 Sum_probs=332.5
Q ss_pred CCCcccChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCC
Q psy7557 70 IPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERA 149 (936)
Q Consensus 70 ~p~p~~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~ 149 (936)
.+.+..+|++ +++++.++++|.+.||.+|+|+|.++++.+++|+|++++||||||||++|++|++..+.. ...
T Consensus 32 ~~~~~~~f~~-~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~------~~~ 104 (410)
T 2j0s_A 32 EVDVTPTFDT-MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI------QVR 104 (410)
T ss_dssp TCCCCCSGGG-GCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT------TSC
T ss_pred CccCCCCHhh-cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhh------ccC
Confidence 3456778988 699999999999999999999999999999999999999999999999999999876532 134
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHhcc-CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEE
Q psy7557 150 GPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVV 228 (936)
Q Consensus 150 ~~~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lV 228 (936)
++++||++||++|+.|+++.++++. ..++++..++||.....+...+..+++|+|+||++|.+++.++...+.+++++|
T Consensus 105 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vV 184 (410)
T 2j0s_A 105 ETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLV 184 (410)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEE
Confidence 6789999999999999999999975 568899999999998888888888899999999999999998888899999999
Q ss_pred EccchhhhcCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchh-h
Q psy7557 229 LDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDE-K 307 (936)
Q Consensus 229 iDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-k 307 (936)
+||||++.+++|...+..+...++++.|++++|||+++.+..+...++.+|..+.+.... .....+.+.+..+.... +
T Consensus 185 iDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k 263 (410)
T 2j0s_A 185 LDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDE-LTLEGIKQFFVAVEREEWK 263 (410)
T ss_dssp EETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGG-CSCTTEEEEEEEESSTTHH
T ss_pred EccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCcc-ccCCCceEEEEEeCcHHhH
Confidence 999999999999999999999999999999999999999988899999999887665543 23455677776666544 7
Q ss_pred HHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCC
Q psy7557 308 KDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLD 387 (936)
Q Consensus 308 ~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiD 387 (936)
...+.+++... ..+++||||++++.++.+++.|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|
T Consensus 264 ~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 341 (410)
T 2j0s_A 264 FDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 341 (410)
T ss_dssp HHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCC
T ss_pred HHHHHHHHHhc--CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCC
Confidence 88888887765 3569999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHhhcCCccc
Q psy7557 388 VPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEGGHESY 449 (936)
Q Consensus 388 ip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 449 (936)
+|++++||+||+|.+..+|+||+||+||.|+.|.+++|+++.|...+..+.+++...-.+.|
T Consensus 342 i~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 403 (410)
T 2j0s_A 342 VPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMP 403 (410)
T ss_dssp CTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECC
T ss_pred cccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecc
Confidence 99999999999999999999999999999999999999999999999988888876654444
No 6
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=6e-54 Score=489.54 Aligned_cols=372 Identities=32% Similarity=0.536 Sum_probs=318.5
Q ss_pred CCCCCcccChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCC
Q psy7557 68 FQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISE 147 (936)
Q Consensus 68 ~~~p~p~~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~ 147 (936)
.+++.+..+|++ +++++.+++.|.+.||..|+|+|.++++.+++|+|++++||||||||++|++|++..+...
T Consensus 33 ~~~~~~~~~f~~-~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~------ 105 (414)
T 3eiq_A 33 SNWNEIVDSFDD-MNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD------ 105 (414)
T ss_dssp CCCCCCCCCGGG-GCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT------
T ss_pred CCccchhcCHhh-CCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc------
Confidence 356677889988 6999999999999999999999999999999999999999999999999999999776432
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHhcc-CCCCEEEEEeCCccchHHHHHhh-cCCcEEEeCCchhHHHHHcCCcCCCCce
Q psy7557 148 RAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIR-EGCHILIATPGRLNDFVSRASIDLKAVS 225 (936)
Q Consensus 148 ~~~~~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~ 225 (936)
..++++||++||++|+.|+++.++++. ..+..+...+||.....+...+. .+++|+|+||++|.+.+..+...+.+++
T Consensus 106 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~ 185 (414)
T 3eiq_A 106 LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIK 185 (414)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCC
T ss_pred CCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCc
Confidence 346789999999999999999999974 56788999999988887777766 5589999999999999998888899999
Q ss_pred EEEEccchhhhcCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCch
Q psy7557 226 FVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDED 305 (936)
Q Consensus 226 ~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 305 (936)
+||+||||++.+++|...+..+...++++.|++++|||+++.+..+...++.++..+....... ....+.+.+..+...
T Consensus 186 ~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 264 (414)
T 3eiq_A 186 MFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEEL-TLEGIRQFYINVERE 264 (414)
T ss_dssp EEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCC-CTTSCCEEEEECSSS
T ss_pred EEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCcc-CCCCceEEEEEeChH
Confidence 9999999999999999999999999999999999999999999999999999998887665543 334455655555544
Q ss_pred -hhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEeccccc
Q psy7557 306 -EKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASR 384 (936)
Q Consensus 306 -~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~ 384 (936)
.+...+..++... ..+++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++
T Consensus 265 ~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 342 (414)
T 3eiq_A 265 EWKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLAR 342 (414)
T ss_dssp TTHHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC-
T ss_pred HhHHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCcccc
Confidence 4778888877765 4679999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHhhcCCccc
Q psy7557 385 GLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEGGHESY 449 (936)
Q Consensus 385 GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 449 (936)
|+|+|++++||+||+|.+..+|+||+||+||.|+.|.|++|+++.+...+..+.+++.....++|
T Consensus 343 Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (414)
T 3eiq_A 343 GIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMP 407 (414)
T ss_dssp -CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECC
T ss_pred CCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccC
Confidence 99999999999999999999999999999999999999999999999999999988887765554
No 7
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=5.5e-53 Score=479.11 Aligned_cols=367 Identities=29% Similarity=0.483 Sum_probs=326.5
Q ss_pred CcccChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCC
Q psy7557 72 NPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGP 151 (936)
Q Consensus 72 ~p~~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~ 151 (936)
.+..+|++ +++++.++++|.+.||.+|+|+|.++++.+++|+|++++||||||||++|++|++..+... ..++
T Consensus 18 ~~~~~f~~-~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~------~~~~ 90 (400)
T 1s2m_A 18 TKGNTFED-FYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK------LNKI 90 (400)
T ss_dssp ---CCGGG-GCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT------SCSC
T ss_pred cccCChhh-cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc------cCCc
Confidence 34567988 6899999999999999999999999999999999999999999999999999998776321 3467
Q ss_pred EEEEEcCcHHHHHHHHHHHHhcc-CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEc
Q psy7557 152 SVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLD 230 (936)
Q Consensus 152 ~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViD 230 (936)
++||++||++|+.|+++.++++. ..++++..++|+.....+...+..+++|+|+||+++.+.+.+....+.+++++|+|
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiD 170 (400)
T 1s2m_A 91 QALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMD 170 (400)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEE
T ss_pred cEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEe
Confidence 89999999999999999999975 45889999999988887777777789999999999999998887889999999999
Q ss_pred cchhhhcCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHH
Q psy7557 231 EADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDW 310 (936)
Q Consensus 231 Eah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 310 (936)
|||++.+.+|...+..+...+++..|++++|||+|..+......++.+|..+..... .....+.+.+..+....+...
T Consensus 171 EaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~ 248 (400)
T 1s2m_A 171 EADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE--LTLKGITQYYAFVEERQKLHC 248 (400)
T ss_dssp SHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS--CBCTTEEEEEEECCGGGHHHH
T ss_pred CchHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc--cccCCceeEEEEechhhHHHH
Confidence 999999988999999999999889999999999999999999999988877654432 234567777888888888888
Q ss_pred HHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCC
Q psy7557 311 LMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPD 390 (936)
Q Consensus 311 l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~ 390 (936)
+..++... ..+++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 249 l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~ 326 (400)
T 1s2m_A 249 LNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQA 326 (400)
T ss_dssp HHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTT
T ss_pred HHHHHhhc--CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccC
Confidence 88888764 5679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHhhcCCccc
Q psy7557 391 LTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEGGHESY 449 (936)
Q Consensus 391 v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 449 (936)
+++||+||+|.+..+|+||+||+||.|+.|.|++|+++.|...+..+.+.+...-++.|
T Consensus 327 ~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~ 385 (400)
T 1s2m_A 327 VNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIP 385 (400)
T ss_dssp EEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECC
T ss_pred CCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCccccc
Confidence 99999999999999999999999999999999999999998888888777655444333
No 8
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.4e-52 Score=476.64 Aligned_cols=345 Identities=40% Similarity=0.654 Sum_probs=307.1
Q ss_pred CCCCCcCChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCC----
Q psy7557 589 QIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTP---- 664 (936)
Q Consensus 589 ~~p~~~~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~---- 664 (936)
.+|.++.+|++ +++++.+.++|..+||..|+|+|.++++.+++|+|++++||||||||++|++|++..+......
T Consensus 9 ~~p~~~~~f~~-~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~ 87 (417)
T 2i4i_A 9 NCPPHIESFSD-VEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALR 87 (417)
T ss_dssp TCCCCCSSGGG-SCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred cCCcccCCHhh-CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhh
Confidence 57899999998 6899999999999999999999999999999999999999999999999999999877543210
Q ss_pred --------CccCCCCEEEEEecCHHHHHHHHHHHHhcc-CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHH
Q psy7557 665 --------ISERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVS 735 (936)
Q Consensus 665 --------~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~ 735 (936)
.....++++||++||++||.|+++.++++. ..++++..++||.....+...+..+++|+|+||++|.+++.
T Consensus 88 ~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~ 167 (417)
T 2i4i_A 88 AMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMME 167 (417)
T ss_dssp HHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHH
T ss_pred ccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHH
Confidence 011235789999999999999999999874 45788999999998888888888889999999999999999
Q ss_pred cCCCCCCCceEEEEcccchhccCCCHHHHHHHhhhc--CC--CceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCccc
Q psy7557 736 RASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYI--NP--NRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAA 811 (936)
Q Consensus 736 ~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~--~~--~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 811 (936)
.+.+.++++++||+||||++++++|...+..+.... ++ ..|++++|||++..+..+...++.++..+...... ..
T Consensus 168 ~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 246 (417)
T 2i4i_A 168 RGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-ST 246 (417)
T ss_dssp TTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC-----C
T ss_pred cCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCC-CC
Confidence 888889999999999999999999999999988743 32 68999999999999999999999999887776543 34
Q ss_pred CCceEEEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcC
Q psy7557 812 THTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSG 891 (936)
Q Consensus 812 ~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g 891 (936)
...+.+.+..+....+...+.+++... ...+++||||+++..++.++..|...++.+..+||+|++++|..+++.|++|
T Consensus 247 ~~~i~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g 325 (417)
T 2i4i_A 247 SENITQKVVWVEESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 325 (417)
T ss_dssp CSSEEEEEEECCGGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHT
T ss_pred ccCceEEEEEeccHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcC
Confidence 456777888888888999999988876 4568899999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 892 YARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 892 ~~~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
+.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.
T Consensus 326 ~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~ 370 (417)
T 2i4i_A 326 KSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRV 370 (417)
T ss_dssp SSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC-
T ss_pred CCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccC
Confidence 999999999999999999999999999999999999999999995
No 9
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.3e-52 Score=474.64 Aligned_cols=366 Identities=29% Similarity=0.468 Sum_probs=323.4
Q ss_pred cChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEE
Q psy7557 75 TSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVL 154 (936)
Q Consensus 75 ~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~l 154 (936)
.+|++ +++++.++++|.++||.+|+|+|.++++.+++|+|+++++|||+|||++|++|++..+... ..++++|
T Consensus 8 ~~f~~-~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~------~~~~~~l 80 (391)
T 1xti_A 8 SGFRD-FLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV------TGQVSVL 80 (391)
T ss_dssp -CGGG-GCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC------TTCCCEE
T ss_pred CChhh-cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc------CCCeeEE
Confidence 46877 6899999999999999999999999999999999999999999999999999998766321 3467899
Q ss_pred EEcCcHHHHHHHHHHHHhccC--CCCEEEEEeCCccchHHHHHhhcC-CcEEEeCCchhHHHHHcCCcCCCCceEEEEcc
Q psy7557 155 VMAPTRELATQIEREVNKIDY--KGLKAVCVYGGKEIEPQLEKIREG-CHILIATPGRLNDFVSRASIDLKAVSFVVLDE 231 (936)
Q Consensus 155 il~Pt~~La~Q~~~~~~~~~~--~~~~~~~~~gg~~~~~~~~~~~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDE 231 (936)
|++||++|+.|+++.++++.. .++++..++||.........+..+ ++|+|+||+++.+.+......+.+++++|+||
T Consensus 81 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDE 160 (391)
T 1xti_A 81 VMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 160 (391)
T ss_dssp EECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECS
T ss_pred EECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeC
Confidence 999999999999999999753 378999999998877776666555 79999999999999988888899999999999
Q ss_pred chhhhcC-CCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHH
Q psy7557 232 ADRMLDL-GFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDW 310 (936)
Q Consensus 232 ah~l~~~-~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 310 (936)
||++.++ ++...+..+....++..|++++|||+++.....+..++.+|..+............+.+.+..+....+...
T Consensus 161 aH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (391)
T 1xti_A 161 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRK 240 (391)
T ss_dssp HHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHH
T ss_pred HHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHH
Confidence 9999884 788888889888888999999999999999999999999998887766554455667888888888889988
Q ss_pred HHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCC
Q psy7557 311 LMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPD 390 (936)
Q Consensus 311 l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~ 390 (936)
+.+++... ..+++||||+++..+..+++.|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 241 l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~ 318 (391)
T 1xti_A 241 LFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIER 318 (391)
T ss_dssp HHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTT
T ss_pred HHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCccc
Confidence 98888875 5689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccC-hhhHHhHHHHHhhcCCccc
Q psy7557 391 LTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD-WSHAHEIIPILEEGGHESY 449 (936)
Q Consensus 391 v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~ 449 (936)
+++||+||+|.+..+|+||+||+||.|+.|.+++++++.+ ...+..+.+.+...-.+.|
T Consensus 319 ~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (391)
T 1xti_A 319 VNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELP 378 (391)
T ss_dssp EEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECC
T ss_pred CCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCC
Confidence 9999999999999999999999999999999999999764 4555666665554443333
No 10
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=2e-52 Score=495.31 Aligned_cols=366 Identities=29% Similarity=0.459 Sum_probs=306.7
Q ss_pred ccChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHh--cCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCC
Q psy7557 74 VTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILM--SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGP 151 (936)
Q Consensus 74 ~~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~--~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~ 151 (936)
..+|.+...+++.++++|..+||.+|+|+|.++|+.++ .|+|++++||||||||++|++|++..+..... ....++
T Consensus 19 ~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~--~~~~~~ 96 (579)
T 3sqw_A 19 LDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF--DSQYMV 96 (579)
T ss_dssp HHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT--SSTTSC
T ss_pred HHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc--cccCCC
Confidence 33443333489999999999999999999999999999 78899999999999999999999988765432 123467
Q ss_pred EEEEEcCcHHHHHHHHHHHHhcc-----CCCCEEEEEeCCccchHHHHHhhc-CCcEEEeCCchhHHHHHcC-CcCCCCc
Q psy7557 152 SVLVMAPTRELATQIEREVNKID-----YKGLKAVCVYGGKEIEPQLEKIRE-GCHILIATPGRLNDFVSRA-SIDLKAV 224 (936)
Q Consensus 152 ~~lil~Pt~~La~Q~~~~~~~~~-----~~~~~~~~~~gg~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~l~~~-~~~~~~~ 224 (936)
++||++||++||.|+++.++++. ...+.+..++||.....+...+.. +++|+|+||++|.+++.+. ...++.+
T Consensus 97 ~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~ 176 (579)
T 3sqw_A 97 KAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFV 176 (579)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTC
T ss_pred eEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccC
Confidence 89999999999999999999862 345778889999988888777754 6999999999999988765 4467899
Q ss_pred eEEEEccchhhhcCCCHHHHHHHHhhcC-------CCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCC---cccCCc
Q psy7557 225 SFVVLDEADRMLDLGFEPQINKTSIYIN-------PNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLD---LAATHT 294 (936)
Q Consensus 225 ~~lViDEah~l~~~~~~~~~~~i~~~~~-------~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~ 294 (936)
++|||||||+++++||.+.+..+...++ +++|+++||||+++.+..++..++.++..+.+.... ......
T Consensus 177 ~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 256 (579)
T 3sqw_A 177 DYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHER 256 (579)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTT
T ss_pred CEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccc
Confidence 9999999999999999999998877653 377999999999999999999999988776654322 223345
Q ss_pred eEEEEEEeCch-hhHH----HHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhc---CCceeeecCCCCHHHHHHHHH
Q psy7557 295 VTQKIIILDED-EKKD----WLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQ---YRKSCSLYGDLSQEDREIALE 366 (936)
Q Consensus 295 ~~~~~~~~~~~-~k~~----~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~---~~~~~~~h~~~~~~~R~~~~~ 366 (936)
+.+.+...... .+.. .+...+... ....++||||+++..++.+++.|... ++.+..+||+|++.+|..+++
T Consensus 257 i~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~ 335 (579)
T 3sqw_A 257 IDQSVVISEKFANSIFAAVEHIKKQIKER-DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVK 335 (579)
T ss_dssp EEEEEEEESSTTHHHHHHHHHHHHHHHHT-TTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHH
T ss_pred cceEEEEecchhhhHHHHHHHHHHHHhhc-CCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHH
Confidence 66666655542 2222 222222221 45689999999999999999999887 889999999999999999999
Q ss_pred HhhcCCcEEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHh
Q psy7557 367 DITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILE 442 (936)
Q Consensus 367 ~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~ 442 (936)
.|++|+.+|||||+++++|||+|++++||+||+|.+..+|+||+|||||.|+.|.|++|+++.|...++.+.+...
T Consensus 336 ~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~ 411 (579)
T 3sqw_A 336 RFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKN 411 (579)
T ss_dssp HHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHC
T ss_pred HhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999887777776543
No 11
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=4.8e-52 Score=492.32 Aligned_cols=365 Identities=29% Similarity=0.450 Sum_probs=304.5
Q ss_pred cChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHh--cCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCE
Q psy7557 75 TSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILM--SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPS 152 (936)
Q Consensus 75 ~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~--~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~ 152 (936)
.+|.+...+++.+++.+.+.||.+|+|+|.++|+.++ .|+|++++||||||||++|++|++..+...... ...+++
T Consensus 71 ~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~--~~~~~~ 148 (563)
T 3i5x_A 71 DSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD--SQYMVK 148 (563)
T ss_dssp HHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS--STTSCC
T ss_pred HHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc--ccCCee
Confidence 3333333489999999999999999999999999999 678999999999999999999999888654321 234678
Q ss_pred EEEEcCcHHHHHHHHHHHHhc-----cCCCCEEEEEeCCccchHHHHHhh-cCCcEEEeCCchhHHHHHcC-CcCCCCce
Q psy7557 153 VLVMAPTRELATQIEREVNKI-----DYKGLKAVCVYGGKEIEPQLEKIR-EGCHILIATPGRLNDFVSRA-SIDLKAVS 225 (936)
Q Consensus 153 ~lil~Pt~~La~Q~~~~~~~~-----~~~~~~~~~~~gg~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~-~~~~~~~~ 225 (936)
+|||+||++||.|+++.++++ ......+..++||.....++..+. .+++|+|+||++|.+++.+. ...+++++
T Consensus 149 ~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~ 228 (563)
T 3i5x_A 149 AVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVD 228 (563)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCC
T ss_pred EEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccce
Confidence 999999999999999999985 234577888999988887777664 46999999999999988765 34578899
Q ss_pred EEEEccchhhhcCCCHHHHHHHHhhc-------CCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCC---cccCCce
Q psy7557 226 FVVLDEADRMLDLGFEPQINKTSIYI-------NPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLD---LAATHTV 295 (936)
Q Consensus 226 ~lViDEah~l~~~~~~~~~~~i~~~~-------~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~ 295 (936)
+|||||||++++++|.+.+..+...+ .+++|+++||||+++.+..++..++.++..+.+.... ......+
T Consensus 229 ~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (563)
T 3i5x_A 229 YKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERI 308 (563)
T ss_dssp EEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTE
T ss_pred EEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccC
Confidence 99999999999999999999887665 2478999999999999999999999988776654322 1223446
Q ss_pred EEEEEEeCch-hhHH----HHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhc---CCceeeecCCCCHHHHHHHHHH
Q psy7557 296 TQKIIILDED-EKKD----WLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQ---YRKSCSLYGDLSQEDREIALED 367 (936)
Q Consensus 296 ~~~~~~~~~~-~k~~----~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~---~~~~~~~h~~~~~~~R~~~~~~ 367 (936)
.+.+...... .+.. .+...+... ....++||||+++..++.+++.|... ++.+..+||+|++.+|..+++.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~ 387 (563)
T 3i5x_A 309 DQSVVISEKFANSIFAAVEHIKKQIKER-DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKR 387 (563)
T ss_dssp EEEEEEESSTTHHHHHHHHHHHHHHHHT-TTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHH
T ss_pred ceEEEECchhHhhHHHHHHHHHHHHhhc-CCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHH
Confidence 6666555442 2222 222222222 45789999999999999999999887 8899999999999999999999
Q ss_pred hhcCCcEEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHh
Q psy7557 368 ITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILE 442 (936)
Q Consensus 368 f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~ 442 (936)
|++|+.+|||||+++++|||+|++++||+||+|.++.+|+||+|||||.|+.|.|++|+++.|...++.+.+...
T Consensus 388 f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~ 462 (563)
T 3i5x_A 388 FKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKN 462 (563)
T ss_dssp HHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHC
T ss_pred HhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999999887777766543
No 12
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=4.9e-52 Score=473.46 Aligned_cols=362 Identities=29% Similarity=0.475 Sum_probs=313.0
Q ss_pred CCCcccChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcC--CcEEEEecCCCCcchhchHHHHHHhhcCCCCCCC
Q psy7557 70 IPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSG--HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISE 147 (936)
Q Consensus 70 ~p~p~~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g--~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~ 147 (936)
.+.++.+|++ +++++.++++|.+.||..|+|+|.++++.+++| +|++++||||||||++|++|++..+...
T Consensus 20 ~~~~~~~f~~-~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~------ 92 (412)
T 3fht_A 20 PLYSVKSFEE-LRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA------ 92 (412)
T ss_dssp TTCCSSCTGG-GTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT------
T ss_pred CccccCCHhh-CCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc------
Confidence 3456788988 699999999999999999999999999999987 9999999999999999999999876432
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHhccC--CCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHc-CCcCCCCc
Q psy7557 148 RAGPSVLVMAPTRELATQIEREVNKIDY--KGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSR-ASIDLKAV 224 (936)
Q Consensus 148 ~~~~~~lil~Pt~~La~Q~~~~~~~~~~--~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~ 224 (936)
..++++||++||++|+.|+++.++++.. .++.+....|+....... ..+++|+|+||++|.+++.+ +.+.+.++
T Consensus 93 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~~~~~ 169 (412)
T 3fht_A 93 NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKI 169 (412)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSCGGGC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcChhhC
Confidence 3467899999999999999999999753 367888888876654332 34589999999999998865 56678999
Q ss_pred eEEEEccchhhhc-CCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeC
Q psy7557 225 SFVVLDEADRMLD-LGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD 303 (936)
Q Consensus 225 ~~lViDEah~l~~-~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 303 (936)
++||+||||++.+ .++...+..+...++++.|++++|||+++.+..++..++.++..+...... .....+.+.+..+.
T Consensus 170 ~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 248 (412)
T 3fht_A 170 KVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREE-ETLDTIKQYYVLCS 248 (412)
T ss_dssp CEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGG-SSCTTEEEEEEECS
T ss_pred cEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeecccc-ccccCceEEEEEcC
Confidence 9999999999987 789999999999999999999999999999999999999999887766544 33445666666555
Q ss_pred c-hhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEeccc
Q psy7557 304 E-DEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVA 382 (936)
Q Consensus 304 ~-~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~ 382 (936)
. ..+...+..++... ..+++||||+++..+..+++.|...+..+..+||+|++.+|..+++.|++|+.+|||||+++
T Consensus 249 ~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 326 (412)
T 3fht_A 249 SRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVC 326 (412)
T ss_dssp SHHHHHHHHHHHHHHH--SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGG
T ss_pred ChHHHHHHHHHHHhhc--CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCcc
Confidence 4 56777777777764 46799999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCcEEEEecCC------CCccccccCCCCcccCCCceeEEEEecccC-hhhHHhHHHHHhhc
Q psy7557 383 SRGLDVPDLTHVINYDFP------SHIEEYVHRVGRTGRAGKSGESITLMTRKD-WSHAHEIIPILEEG 444 (936)
Q Consensus 383 ~~GiDip~v~~VI~~d~p------~s~~~y~qr~GRagR~g~~g~~~~~~~~~~-~~~~~~l~~~l~~~ 444 (936)
++|+|+|++++||+||+| .+..+|+||+||+||.|+.|.+++++++.+ ...+..+.+.+...
T Consensus 327 ~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~ 395 (412)
T 3fht_A 327 ARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKK 395 (412)
T ss_dssp TSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCC
T ss_pred ccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCc
Confidence 999999999999999999 467899999999999999999999998764 66666666666544
No 13
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.3e-51 Score=458.01 Aligned_cols=354 Identities=33% Similarity=0.557 Sum_probs=318.3
Q ss_pred cChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcC-CcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEE
Q psy7557 75 TSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSG-HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSV 153 (936)
Q Consensus 75 ~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g-~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~ 153 (936)
.+|++ +++++.+++.|.+.||.+|+|+|.++++.+++| +++++++|||||||++|++|++..+.. ..++++
T Consensus 6 ~~f~~-~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~-------~~~~~~ 77 (367)
T 1hv8_A 6 MNFNE-LNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE-------NNGIEA 77 (367)
T ss_dssp CCGGG-SSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS-------SSSCCE
T ss_pred Cchhh-cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc-------cCCCcE
Confidence 35777 689999999999999999999999999999988 799999999999999999998876532 346789
Q ss_pred EEEcCcHHHHHHHHHHHHhcc-CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccc
Q psy7557 154 LVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEA 232 (936)
Q Consensus 154 lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEa 232 (936)
||++||++|+.|+++.++++. ..++++..++||.....+...+. +++|+|+||+++.+.+..+...+.+++++|+|||
T Consensus 78 lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEa 156 (367)
T 1hv8_A 78 IILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEA 156 (367)
T ss_dssp EEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETH
T ss_pred EEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCc
Confidence 999999999999999999964 56788999999988777666554 6899999999999999888888999999999999
Q ss_pred hhhhcCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHH
Q psy7557 233 DRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLM 312 (936)
Q Consensus 233 h~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 312 (936)
|++.++++...+..+....++..+++++|||+++........++.++..+.... ...+.+.+..+....+...+.
T Consensus 157 h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~ 231 (367)
T 1hv8_A 157 DEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI-----NANIEQSYVEVNENERFEALC 231 (367)
T ss_dssp HHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS-----SSSSEEEEEECCGGGHHHHHH
T ss_pred hHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC-----CCCceEEEEEeChHHHHHHHH
Confidence 999999999999999999999999999999999999999999888876655432 335677777888888888888
Q ss_pred HHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCc
Q psy7557 313 EFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLT 392 (936)
Q Consensus 313 ~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~ 392 (936)
+++. ....++||||+++..++.+++.|...+..+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 232 ~~l~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~ 308 (367)
T 1hv8_A 232 RLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLN 308 (367)
T ss_dssp HHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCS
T ss_pred HHHh---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCC
Confidence 7776 3578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHhhcC
Q psy7557 393 HVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEGG 445 (936)
Q Consensus 393 ~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~ 445 (936)
+||++++|.|..+|+||+||+||.|+.|.+++++++.|...+..+.+.+...-
T Consensus 309 ~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 361 (367)
T 1hv8_A 309 CVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKI 361 (367)
T ss_dssp EEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCC
T ss_pred EEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999998888888776543
No 14
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=4e-51 Score=465.35 Aligned_cols=336 Identities=32% Similarity=0.576 Sum_probs=301.4
Q ss_pred CCCcCChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCC
Q psy7557 591 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAG 670 (936)
Q Consensus 591 p~~~~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~ 670 (936)
+.+..+|++ +++++.++++|+++||..|+|+|.++++.+++|+|++++||||||||++|++|++..+.. ...+
T Consensus 33 ~~~~~~f~~-~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~------~~~~ 105 (410)
T 2j0s_A 33 VDVTPTFDT-MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI------QVRE 105 (410)
T ss_dssp CCCCCSGGG-GCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT------TSCS
T ss_pred ccCCCCHhh-cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhh------ccCC
Confidence 345678888 789999999999999999999999999999999999999999999999999999976632 1356
Q ss_pred CEEEEEecCHHHHHHHHHHHHhcc-CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEE
Q psy7557 671 PSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVL 749 (936)
Q Consensus 671 ~~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lVi 749 (936)
+++||++||++|+.|+.+.++++. ..++.+..++||.....+...+..+++|+|+||+++.+++.++...+.++++||+
T Consensus 106 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vVi 185 (410)
T 2j0s_A 106 TQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVL 185 (410)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEE
Confidence 799999999999999999999985 5578899999999888888888888999999999999999988888899999999
Q ss_pred cccchhccCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCc-chhH
Q psy7557 750 DEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDE-DEKK 828 (936)
Q Consensus 750 DEah~l~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~k~ 828 (936)
||||++.+++|...+..+...+++..|++++|||++..+..+...++.+|..+.+..... ....+.+.+..+.. ..+.
T Consensus 186 DEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~ 264 (410)
T 2j0s_A 186 DEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDEL-TLEGIKQFFVAVEREEWKF 264 (410)
T ss_dssp ETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGC-SCTTEEEEEEEESSTTHHH
T ss_pred ccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccc-cCCCceEEEEEeCcHHhHH
Confidence 999999999999999999999999999999999999998888888999998876654432 33445666555554 4488
Q ss_pred HHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCC
Q psy7557 829 DWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDV 908 (936)
Q Consensus 829 ~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidi 908 (936)
..+..++... ..+++||||++++.++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+
T Consensus 265 ~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 342 (410)
T 2j0s_A 265 DTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDV 342 (410)
T ss_dssp HHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCC
T ss_pred HHHHHHHHhc--CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCc
Confidence 8888888776 34689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 909 PDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 909 p~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
|++++||+||+|.+..+|+||+||+||.
T Consensus 343 ~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~ 370 (410)
T 2j0s_A 343 PQVSLIINYDLPNNRELYIHRIGRSGRY 370 (410)
T ss_dssp TTEEEEEESSCCSSHHHHHHHHTTSSGG
T ss_pred ccCCEEEEECCCCCHHHHHHhcccccCC
Confidence 9999999999999999999999999994
No 15
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=4.6e-53 Score=490.44 Aligned_cols=358 Identities=29% Similarity=0.482 Sum_probs=176.8
Q ss_pred CcccChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcC--CcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCC
Q psy7557 72 NPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSG--HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERA 149 (936)
Q Consensus 72 ~p~~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g--~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~ 149 (936)
.++.+|++ +++++.++++|.++||..|+|+|.++++.+++| +|++++||||||||++|++|++..+... ..
T Consensus 89 ~~~~~f~~-~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~------~~ 161 (479)
T 3fmp_B 89 YSVKSFEE-LRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA------NK 161 (479)
T ss_dssp CCCCCSGG-GTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT------SC
T ss_pred cCcCCHHH-cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc------CC
Confidence 34678888 699999999999999999999999999999987 9999999999999999999998766332 34
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHhccC--CCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHc-CCcCCCCceE
Q psy7557 150 GPSVLVMAPTRELATQIEREVNKIDY--KGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSR-ASIDLKAVSF 226 (936)
Q Consensus 150 ~~~~lil~Pt~~La~Q~~~~~~~~~~--~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~~~ 226 (936)
++++||++||++||.|+++.++++.. .++.+....++....... ..+++|+|+||++|.+++.+ +.+.++++++
T Consensus 162 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~ 238 (479)
T 3fmp_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKV 238 (479)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCCCCGGGCCE
T ss_pred CCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc---cCCCCEEEECchHHHHHHHhcCCcCcccCCE
Confidence 66899999999999999999988743 467788888776554321 33579999999999999865 4667899999
Q ss_pred EEEccchhhhc-CCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCc-
Q psy7557 227 VVLDEADRMLD-LGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDE- 304 (936)
Q Consensus 227 lViDEah~l~~-~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~- 304 (936)
|||||||++++ .++...+..+...+++++|++++|||++..+..++..++.+|..+.+..... ....+.+.+..+..
T Consensus 239 iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~ 317 (479)
T 3fmp_B 239 FVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE-TLDTIKQYYVLCSSR 317 (479)
T ss_dssp EEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC--------------------
T ss_pred EEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEecccccc-CcCCceEEEEEeCCH
Confidence 99999999987 6888899999999999999999999999999999999999998887766542 33445565555544
Q ss_pred hhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEeccccc
Q psy7557 305 DEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASR 384 (936)
Q Consensus 305 ~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~ 384 (936)
..+...+..++... ..+++||||+++..+..+++.|...+..+..+||+|++.+|..+++.|++|+.+|||||+++++
T Consensus 318 ~~~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~ 395 (479)
T 3fmp_B 318 DEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCAR 395 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcccccc
Confidence 45666666665543 4579999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEecCC------CCccccccCCCCcccCCCceeEEEEecccC-hhhHHhHHHHHh
Q psy7557 385 GLDVPDLTHVINYDFP------SHIEEYVHRVGRTGRAGKSGESITLMTRKD-WSHAHEIIPILE 442 (936)
Q Consensus 385 GiDip~v~~VI~~d~p------~s~~~y~qr~GRagR~g~~g~~~~~~~~~~-~~~~~~l~~~l~ 442 (936)
|+|+|++++||+||+| .+..+|+||+|||||.|+.|.|++|+++.+ ...+..+.+.+.
T Consensus 396 GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~ 460 (479)
T 3fmp_B 396 GIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFN 460 (479)
T ss_dssp -----------------------------------------------------------------
T ss_pred CCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhC
Confidence 9999999999999999 567899999999999999999999998765 555555555444
No 16
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=4.2e-51 Score=462.98 Aligned_cols=356 Identities=29% Similarity=0.517 Sum_probs=305.4
Q ss_pred cccChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcC--CcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCC
Q psy7557 73 PVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSG--HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAG 150 (936)
Q Consensus 73 p~~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g--~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~ 150 (936)
...+|++ +++++.++++|.+.||.+|+|+|.++++.+++| +|++++||||||||++|++|++..+... ..+
T Consensus 3 ~~~~f~~-~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~------~~~ 75 (395)
T 3pey_A 3 MAKSFDE-LGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE------DAS 75 (395)
T ss_dssp -CCSSTT-SCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT------CCS
T ss_pred cccCHhh-CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC------CCC
Confidence 3457877 799999999999999999999999999999988 9999999999999999999998776431 356
Q ss_pred CEEEEEcCcHHHHHHHHHHHHhcc-CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEE
Q psy7557 151 PSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVL 229 (936)
Q Consensus 151 ~~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lVi 229 (936)
+++||++||++|+.|+++.++++. ..++.+...+++...... ..+++|+|+||+++.+.+.+....+.+++++|+
T Consensus 76 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIi 151 (395)
T 3pey_A 76 PQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVL 151 (395)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEE
T ss_pred ccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEE
Confidence 789999999999999999999975 457778877776543322 235899999999999999888888999999999
Q ss_pred ccchhhhc-CCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeC-chhh
Q psy7557 230 DEADRMLD-LGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD-EDEK 307 (936)
Q Consensus 230 DEah~l~~-~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~k 307 (936)
||||++.+ .++...+..+...++++.|++++|||+++.+..+...++.++..+....... ....+.+.+..+. ...+
T Consensus 152 DEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 230 (395)
T 3pey_A 152 DEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEV-NVDAIKQLYMDCKNEADK 230 (395)
T ss_dssp ETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGC-SCTTEEEEEEECSSHHHH
T ss_pred EChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEcccccc-ccccccEEEEEcCchHHH
Confidence 99999988 7888999999999999999999999999999999999999988776655442 3344566555553 4556
Q ss_pred HHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCC
Q psy7557 308 KDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLD 387 (936)
Q Consensus 308 ~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiD 387 (936)
...+..++... ..+++||||+++..++.+++.|...+..+..+||+|++.+|..+++.|++|+.+|||||+++++|+|
T Consensus 231 ~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 308 (395)
T 3pey_A 231 FDVLTELYGLM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGID 308 (395)
T ss_dssp HHHHHHHHTTT--TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCC
T ss_pred HHHHHHHHHhc--cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCC
Confidence 66666666554 4689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEecCCC------CccccccCCCCcccCCCceeEEEEecccC-hhhHHhHHHHHh
Q psy7557 388 VPDLTHVINYDFPS------HIEEYVHRVGRTGRAGKSGESITLMTRKD-WSHAHEIIPILE 442 (936)
Q Consensus 388 ip~v~~VI~~d~p~------s~~~y~qr~GRagR~g~~g~~~~~~~~~~-~~~~~~l~~~l~ 442 (936)
+|++++||+||+|. |..+|+||+||+||.|+.|.+++++++.+ ......+.+.+.
T Consensus 309 ip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 309 IPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp CTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred cccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC
Confidence 99999999999998 99999999999999999999999998754 344444444443
No 17
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.4e-52 Score=475.05 Aligned_cols=368 Identities=32% Similarity=0.540 Sum_probs=187.0
Q ss_pred CCCcccChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCC
Q psy7557 70 IPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERA 149 (936)
Q Consensus 70 ~p~p~~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~ 149 (936)
...+..+|++ +++++.+++.+...||.+|+|+|.++++.+++|+|+++++|||+|||++|++|++..+... ..
T Consensus 16 ~~~~~~~f~~-~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~------~~ 88 (394)
T 1fuu_A 16 YDKVVYKFDD-MELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS------VK 88 (394)
T ss_dssp SCCCCCSSGG-GCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT------CC
T ss_pred cccccCChhh-cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc------CC
Confidence 4566778988 6999999999999999999999999999999999999999999999999999998776431 35
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHhcc-CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEE
Q psy7557 150 GPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVV 228 (936)
Q Consensus 150 ~~~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lV 228 (936)
++++||++||++|+.|+++.++++. ..++++..++||.........+. +++|+|+||+++.+.+..+...+.+++++|
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vI 167 (394)
T 1fuu_A 89 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFI 167 (394)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEE
Confidence 6789999999999999999999864 45789999999988766655444 589999999999999988888889999999
Q ss_pred EccchhhhcCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchh-h
Q psy7557 229 LDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDE-K 307 (936)
Q Consensus 229 iDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-k 307 (936)
+||||++.++++...+..+...+++..|++++|||+++.+......++.+|..+........ ...+.+.+..+.... +
T Consensus 168 iDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 246 (394)
T 1fuu_A 168 LDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELT-LEGIKQFYVNVEEEEYK 246 (394)
T ss_dssp EETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC----------------------
T ss_pred EEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCcccc-CCCceEEEEEcCchhhH
Confidence 99999999999999999999999999999999999999999999999999988877654322 233444444444333 5
Q ss_pred HHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCC
Q psy7557 308 KDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLD 387 (936)
Q Consensus 308 ~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiD 387 (936)
...+..++... ..+++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|
T Consensus 247 ~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld 324 (394)
T 1fuu_A 247 YECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGID 324 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhcC--CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCC
Confidence 56666665543 4579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHhhcCCcc
Q psy7557 388 VPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEGGHES 448 (936)
Q Consensus 388 ip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 448 (936)
+|++++||+||+|.+..+|+||+||+||.|+.|.|+++++++|...+..+.+.+...-.+.
T Consensus 325 i~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 385 (394)
T 1fuu_A 325 VQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEEL 385 (394)
T ss_dssp -------------------------------------------------------------
T ss_pred cccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCccccc
Confidence 9999999999999999999999999999999999999999999888888777666554333
No 18
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=3.2e-49 Score=446.81 Aligned_cols=333 Identities=30% Similarity=0.499 Sum_probs=299.4
Q ss_pred CChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEE
Q psy7557 595 TSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVL 674 (936)
Q Consensus 595 ~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~l 674 (936)
.+|++ +++++.+++.|.++||..|+|+|.++++.++.|+|+++.+|||+|||++|++|++..+... ..++++|
T Consensus 8 ~~f~~-~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~------~~~~~~l 80 (391)
T 1xti_A 8 SGFRD-FLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV------TGQVSVL 80 (391)
T ss_dssp -CGGG-GCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC------TTCCCEE
T ss_pred CChhh-cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc------CCCeeEE
Confidence 35777 7899999999999999999999999999999999999999999999999999998766321 3467899
Q ss_pred EEecCHHHHHHHHHHHHhccC--CCCEEEEEECCccchHHHHHHhcC-ceEEEeCchHHHHHHHcCCCCCCCceEEEEcc
Q psy7557 675 VMAPTRELATQIEREVNKIDY--KGLKAVCVYGGKELEPQLEKIREG-CHILIATPGRLNDFVSRASIDLKAVSFVVLDE 751 (936)
Q Consensus 675 il~Pt~~La~Q~~~~~~~~~~--~~~~~~~~~gg~~~~~~~~~l~~~-~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDE 751 (936)
|++||++|+.|+.+.++++.. .++++..++||.........+..+ ++|+|+||+++..++.+....+.++++||+||
T Consensus 81 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDE 160 (391)
T 1xti_A 81 VMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 160 (391)
T ss_dssp EECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECS
T ss_pred EECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeC
Confidence 999999999999999999853 378899999998877776666654 79999999999999988888899999999999
Q ss_pred cchhccC-CCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHH
Q psy7557 752 ADRMLDL-GFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDW 830 (936)
Q Consensus 752 ah~l~~~-~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 830 (936)
||++.++ ++...+..+....++..|++++|||+++....+...++.+|..+............+.+.+..+....+...
T Consensus 161 aH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (391)
T 1xti_A 161 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRK 240 (391)
T ss_dssp HHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHH
T ss_pred HHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHH
Confidence 9999874 788888888888888999999999999999999999999998887766554455667778888888889888
Q ss_pred HHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCC
Q psy7557 831 LMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPD 910 (936)
Q Consensus 831 l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~ 910 (936)
+..++... ..+++||||+++..++.++..|...+..+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 241 l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~ 318 (391)
T 1xti_A 241 LFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIER 318 (391)
T ss_dssp HHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTT
T ss_pred HHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCccc
Confidence 98888875 5679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 911 LTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 911 v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
+++||+|++|.+..+|+||+||+||.
T Consensus 319 ~~~Vi~~~~p~s~~~~~Qr~GR~~R~ 344 (391)
T 1xti_A 319 VNIAFNYDMPEDSDTYLHRVARAGRF 344 (391)
T ss_dssp EEEEEESSCCSSHHHHHHHHCBCSSS
T ss_pred CCEEEEeCCCCCHHHHHHhcccccCC
Confidence 99999999999999999999999994
No 19
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1e-49 Score=454.51 Aligned_cols=338 Identities=34% Similarity=0.571 Sum_probs=291.1
Q ss_pred CCCCCcCChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccC
Q psy7557 589 QIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISER 668 (936)
Q Consensus 589 ~~p~~~~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~ 668 (936)
.++....+|++ +++++.+++.|+++||..|+|+|.++++.+++|+|++++||||||||++|++|++..+... .
T Consensus 34 ~~~~~~~~f~~-~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~------~ 106 (414)
T 3eiq_A 34 NWNEIVDSFDD-MNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD------L 106 (414)
T ss_dssp CCCCCCCCGGG-GCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT------S
T ss_pred CccchhcCHhh-CCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc------C
Confidence 45667788887 7899999999999999999999999999999999999999999999999999999776432 3
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhcc-CCCCEEEEEECCccchHHHHHHh-cCceEEEeCchHHHHHHHcCCCCCCCceE
Q psy7557 669 AGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIR-EGCHILIATPGRLNDFVSRASIDLKAVSF 746 (936)
Q Consensus 669 ~~~~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~-~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~ 746 (936)
.++++||++||++|+.|+.+.++++. ..+..+..++||.....+...+. .+++|+|+||+++.+.+.+....+.++++
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~ 186 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKM 186 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCE
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcE
Confidence 56789999999999999999999974 55788888999988877777666 56899999999999999988888899999
Q ss_pred EEEcccchhccCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcC-cc
Q psy7557 747 VVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD-ED 825 (936)
Q Consensus 747 lViDEah~l~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~ 825 (936)
||+||||++.+++|...+..+...++++.|++++|||++.....+...++.+|..+......... ..+.+.+..+. ..
T Consensus 187 vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 265 (414)
T 3eiq_A 187 FVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTL-EGIRQFYINVEREE 265 (414)
T ss_dssp EEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCT-TSCCEEEEECSSST
T ss_pred EEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCC-CCceEEEEEeChHH
Confidence 99999999999999999999999999999999999999999999999999999888766554333 33444444444 45
Q ss_pred hhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccC
Q psy7557 826 EKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRG 905 (936)
Q Consensus 826 ~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~G 905 (936)
.+...+..++... ..+++||||+++..++.++..|...+..+..+||+|++.+|..+++.|++|+.+|||||+++++|
T Consensus 266 ~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 343 (414)
T 3eiq_A 266 WKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARG 343 (414)
T ss_dssp THHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--
T ss_pred hHHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccC
Confidence 5788888888765 45789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 906 LDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 906 idip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
+|+|++++||+||+|.+..+|+||+|||||.
T Consensus 344 idip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~ 374 (414)
T 3eiq_A 344 IDVQQVSLVINYDLPTNRENYIHRIGRGGRF 374 (414)
T ss_dssp CCGGGCSCEEESSCCSSTHHHHHHSCCC---
T ss_pred CCccCCCEEEEeCCCCCHHHhhhhcCcccCC
Confidence 9999999999999999999999999999994
No 20
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=6.3e-49 Score=445.75 Aligned_cols=333 Identities=30% Similarity=0.527 Sum_probs=298.3
Q ss_pred CcCChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCE
Q psy7557 593 PVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPS 672 (936)
Q Consensus 593 ~~~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~ 672 (936)
+..+|++ +++++.++++|.++||.+|+|+|.++++.+++|+|++++||||||||++|++|++..+... ..+++
T Consensus 19 ~~~~f~~-~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~------~~~~~ 91 (400)
T 1s2m_A 19 KGNTFED-FYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK------LNKIQ 91 (400)
T ss_dssp --CCGGG-GCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT------SCSCC
T ss_pred ccCChhh-cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc------cCCcc
Confidence 4457888 7899999999999999999999999999999999999999999999999999999776321 34678
Q ss_pred EEEEecCHHHHHHHHHHHHhcc-CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcc
Q psy7557 673 VLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDE 751 (936)
Q Consensus 673 ~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDE 751 (936)
+||++||++|+.|+.+.++++. ..++++..++|+.....+...+..+++|+|+||+++.+++.+....+.++++||+||
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE 171 (400)
T 1s2m_A 92 ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDE 171 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEES
T ss_pred EEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeC
Confidence 9999999999999999999875 447889999999888777777777899999999999999988878899999999999
Q ss_pred cchhccCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHH
Q psy7557 752 ADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWL 831 (936)
Q Consensus 752 ah~l~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 831 (936)
||++.+.+|...+..+...+++..|++++|||++..+......++.+|..+..... .....+.+.+..+....+...+
T Consensus 172 aH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~l 249 (400)
T 1s2m_A 172 ADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE--LTLKGITQYYAFVEERQKLHCL 249 (400)
T ss_dssp HHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS--CBCTTEEEEEEECCGGGHHHHH
T ss_pred chHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc--cccCCceeEEEEechhhHHHHH
Confidence 99999888899999999989899999999999999999998888888876654432 3345567777788888888888
Q ss_pred HHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCC
Q psy7557 832 MEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDL 911 (936)
Q Consensus 832 ~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v 911 (936)
..++... ..+++||||+++..++.++..|...+..+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++
T Consensus 250 ~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~ 327 (400)
T 1s2m_A 250 NTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAV 327 (400)
T ss_dssp HHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTE
T ss_pred HHHHhhc--CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCC
Confidence 8888765 45799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEccCCCChhhhHhhhhhccCC
Q psy7557 912 THVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 912 ~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
++||+||+|.+..+|+||+||+||.
T Consensus 328 ~~Vi~~~~p~s~~~~~Qr~GR~gR~ 352 (400)
T 1s2m_A 328 NVVINFDFPKTAETYLHRIGRSGRF 352 (400)
T ss_dssp EEEEESSCCSSHHHHHHHHCBSSCT
T ss_pred CEEEEeCCCCCHHHHHHhcchhcCC
Confidence 9999999999999999999999995
No 21
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=6.1e-50 Score=468.35 Aligned_cols=340 Identities=17% Similarity=0.257 Sum_probs=276.9
Q ss_pred hcCCHHHHHHHHh-CCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCc
Q psy7557 81 FQHYPEILRQLEN-LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPT 159 (936)
Q Consensus 81 ~~~~~~l~~~l~~-~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt 159 (936)
+++++.+.+.|++ +||.+|+|+|.++|+.+++|+|+++++|||+|||++|++|++. .++.+|||+|+
T Consensus 26 ~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~------------~~g~~lVisP~ 93 (591)
T 2v1x_A 26 FPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC------------SDGFTLVICPL 93 (591)
T ss_dssp STTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT------------SSSEEEEECSC
T ss_pred CCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH------------cCCcEEEEeCH
Confidence 6678889999998 6999999999999999999999999999999999999999973 24589999999
Q ss_pred HHHHHHHHHHHHhccCCCCEEEEEeCCccchHHHH---Hh---hcCCcEEEeCCchhHH---HHH--cCCcCCCCceEEE
Q psy7557 160 RELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLE---KI---REGCHILIATPGRLND---FVS--RASIDLKAVSFVV 228 (936)
Q Consensus 160 ~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~~---~~~~~Iiv~Tp~~l~~---~l~--~~~~~~~~~~~lV 228 (936)
++|+.|+.+.++++ ++++..+.|+........ .+ ..+++|+|+||++|.. ++. .....+.++++||
T Consensus 94 ~~L~~q~~~~l~~~---gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iV 170 (591)
T 2v1x_A 94 ISLMEDQLMVLKQL---GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIA 170 (591)
T ss_dssp HHHHHHHHHHHHHH---TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHhc---CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEE
Confidence 99999999999986 788888888876554432 22 3458999999998742 221 1234577899999
Q ss_pred EccchhhhcCC--CHHHHHH--HHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeC-
Q psy7557 229 LDEADRMLDLG--FEPQINK--TSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD- 303 (936)
Q Consensus 229 iDEah~l~~~~--~~~~~~~--i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~- 303 (936)
|||||++.+|| |++.+.. .+....++.|+++||||+++.+...+..++..+....+... ....++...+....
T Consensus 171 iDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~--~~r~nl~~~v~~~~~ 248 (591)
T 2v1x_A 171 VDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTAS--FNRPNLYYEVRQKPS 248 (591)
T ss_dssp EETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECC--CCCTTEEEEEEECCS
T ss_pred EECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecC--CCCcccEEEEEeCCC
Confidence 99999999998 8777665 33344568999999999999988877776654422222211 11223333333222
Q ss_pred -chhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEeccc
Q psy7557 304 -EDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVA 382 (936)
Q Consensus 304 -~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~ 382 (936)
...+...+.+++... ..+.++||||++++.++.+++.|...++.+..+||+|++.+|..+++.|++|+.+|||||+++
T Consensus 249 ~~~~~~~~l~~~l~~~-~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~ 327 (591)
T 2v1x_A 249 NTEDFIEDIVKLINGR-YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAF 327 (591)
T ss_dssp SHHHHHHHHHHHHTTT-TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTS
T ss_pred cHHHHHHHHHHHHHHh-ccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechh
Confidence 233455666666543 256899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHH
Q psy7557 383 SRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEII 438 (936)
Q Consensus 383 ~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~ 438 (936)
++|||+|+|++||+||+|.|+++|+||+|||||.|..|.|++|+++.|......++
T Consensus 328 ~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 328 GMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp CTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHT
T ss_pred hcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998876655544
No 22
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.2e-49 Score=437.29 Aligned_cols=334 Identities=31% Similarity=0.552 Sum_probs=289.5
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHH
Q psy7557 83 HYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTREL 162 (936)
Q Consensus 83 ~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~L 162 (936)
+++.+.+.|+++||.+|+|+|.++++.+++|+++++++|||+|||++|++|++.. ++++||++||++|
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------------~~~~liv~P~~~L 68 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------------GMKSLVVTPTREL 68 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------------TCCEEEECSSHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh------------cCCEEEEeCCHHH
Confidence 4678999999999999999999999999999999999999999999999998742 4679999999999
Q ss_pred HHHHHHHHHhcc-CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCH
Q psy7557 163 ATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFE 241 (936)
Q Consensus 163 a~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~ 241 (936)
+.|+++.++++. ..++++..++||.....+...+. .++|+|+||++|.+.+......+.+++++|+||||++.++++.
T Consensus 69 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~ 147 (337)
T 2z0m_A 69 TRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFI 147 (337)
T ss_dssp HHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCH
T ss_pred HHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccH
Confidence 999999999874 55788999999988777666554 4899999999999998888888899999999999999999999
Q ss_pred HHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhccCC
Q psy7557 242 PQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEE 321 (936)
Q Consensus 242 ~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~ 321 (936)
..+..+....+...+++++|||+++........++.++..+... .....+.+.+..+....+. ....+.. ..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~ 219 (337)
T 2z0m_A 148 DDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC----IGLANVEHKFVHVKDDWRS--KVQALRE--NK 219 (337)
T ss_dssp HHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS----GGGGGEEEEEEECSSSSHH--HHHHHHT--CC
T ss_pred HHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc----cccCCceEEEEEeChHHHH--HHHHHHh--CC
Confidence 99999999999999999999999999999999999888776432 2234456666655544332 2234433 45
Q ss_pred CCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEecCCC
Q psy7557 322 RDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPS 401 (936)
Q Consensus 322 ~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~ 401 (936)
.+++||||++++.++.+++.|. .+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|.
T Consensus 220 ~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~ 295 (337)
T 2z0m_A 220 DKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQ 295 (337)
T ss_dssp CSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCS
T ss_pred CCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCC
Confidence 7899999999999999988886 678899999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHh
Q psy7557 402 HIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILE 442 (936)
Q Consensus 402 s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~ 442 (936)
|..+|+||+||+||.|+.|.+++|+. .|....+.+.+.+.
T Consensus 296 s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 296 DLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp SHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred CHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 99999999999999999999999999 77777777666554
No 23
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1e-48 Score=446.04 Aligned_cols=332 Identities=30% Similarity=0.499 Sum_probs=288.5
Q ss_pred CCcCChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcC--CcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCC
Q psy7557 592 NPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSG--HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERA 669 (936)
Q Consensus 592 ~~~~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g--~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~ 669 (936)
.++.+|++ +++++.+++.|.++||..|+|+|.++++.++++ +|++++||||||||++|++|++..+... ..
T Consensus 22 ~~~~~f~~-~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~------~~ 94 (412)
T 3fht_A 22 YSVKSFEE-LRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA------NK 94 (412)
T ss_dssp CCSSCTGG-GTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT------SC
T ss_pred cccCCHhh-CCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc------CC
Confidence 45678887 789999999999999999999999999999987 9999999999999999999999776432 35
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhccC--CCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHc-CCCCCCCceE
Q psy7557 670 GPSVLVMAPTRELATQIEREVNKIDY--KGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSR-ASIDLKAVSF 746 (936)
Q Consensus 670 ~~~~lil~Pt~~La~Q~~~~~~~~~~--~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~-~~~~~~~i~~ 746 (936)
++++||++||++|+.|+.+.++++.. .+..+....|+...... ...+++|+|+||+++.+++.+ ....++++++
T Consensus 95 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~ 171 (412)
T 3fht_A 95 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKV 171 (412)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCE
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcE
Confidence 67899999999999999999999853 46788888887665433 134579999999999998865 4566789999
Q ss_pred EEEcccchhcc-CCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcC-c
Q psy7557 747 VVLDEADRMLD-LGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD-E 824 (936)
Q Consensus 747 lViDEah~l~~-~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~ 824 (936)
||+||||++.+ .++...+..+...++++.|++++|||++.....++..++.+|..+....... ....+.+.+..+. .
T Consensus 172 iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 250 (412)
T 3fht_A 172 FVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE-TLDTIKQYYVLCSSR 250 (412)
T ss_dssp EEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGS-SCTTEEEEEEECSSH
T ss_pred EEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccc-cccCceEEEEEcCCh
Confidence 99999999987 6788889999999999999999999999999999999999998877655432 3344555555554 4
Q ss_pred chhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCcc
Q psy7557 825 DEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASR 904 (936)
Q Consensus 825 ~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~ 904 (936)
..+...+..++... ..+++||||+++..++.++..|...+..+..+||+|++.+|..+++.|++|+.+|||||+++++
T Consensus 251 ~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 328 (412)
T 3fht_A 251 DEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCAR 328 (412)
T ss_dssp HHHHHHHHHHHHHH--SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTS
T ss_pred HHHHHHHHHHHhhc--CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCcccc
Confidence 56777777777765 4578999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEccCC------CChhhhHhhhhhccCC
Q psy7557 905 GLDVPDLTHVINYDFP------SHIEEYVHRVGRTGEF 936 (936)
Q Consensus 905 Gidip~v~~VI~~d~p------~s~~~yiqr~GRaGR~ 936 (936)
|+|+|++++||+||+| .+..+|+||+||+||+
T Consensus 329 Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~ 366 (412)
T 3fht_A 329 GIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRF 366 (412)
T ss_dssp SCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCT
T ss_pred CCCccCCCEEEEECCCCCCCCCcchheeecccCcccCC
Confidence 9999999999999999 5778999999999994
No 24
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=8.3e-49 Score=464.24 Aligned_cols=339 Identities=29% Similarity=0.456 Sum_probs=282.6
Q ss_pred CChHHh---hcCCHHHHHHHHhCCCCCCcHHHHHHHHhhh--cCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCC
Q psy7557 595 TSFKQA---FQHYPEILRQLENLSFTTPSPIQAQAWPILM--SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERA 669 (936)
Q Consensus 595 ~~f~~~---~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l--~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~ 669 (936)
.+|.++ ..+++.++++|..+||..|+|+|.++++.++ .|+|++++||||||||++|++|++..+..... ....
T Consensus 17 ~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~--~~~~ 94 (579)
T 3sqw_A 17 VTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF--DSQY 94 (579)
T ss_dssp CCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT--SSTT
T ss_pred cCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc--cccC
Confidence 345543 3489999999999999999999999999999 78899999999999999999999988765322 1234
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhcc-----CCCCEEEEEECCccchHHHHHHhc-CceEEEeCchHHHHHHHcC-CCCCC
Q psy7557 670 GPSVLVMAPTRELATQIEREVNKID-----YKGLKAVCVYGGKELEPQLEKIRE-GCHILIATPGRLNDFVSRA-SIDLK 742 (936)
Q Consensus 670 ~~~~lil~Pt~~La~Q~~~~~~~~~-----~~~~~~~~~~gg~~~~~~~~~l~~-~~~IiV~Tp~~l~~~l~~~-~~~~~ 742 (936)
++++||++||++||.|+.+.++++. .....+..++||.....+...+.. +++|+|+||++|.+++.+. ...++
T Consensus 95 ~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~ 174 (579)
T 3sqw_A 95 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFR 174 (579)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCT
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccc
Confidence 6799999999999999999999862 345778899999888877777654 7999999999999988764 44678
Q ss_pred CceEEEEcccchhccCCCHHHHHHHhhhcC-------CCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCC---cccC
Q psy7557 743 AVSFVVLDEADRMLDLGFEPQINKTSIYIN-------PNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLD---LAAT 812 (936)
Q Consensus 743 ~i~~lViDEah~l~~~~~~~~~~~i~~~~~-------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~ 812 (936)
.+++|||||||++++++|...+..+...++ +.+|+++||||+++.+..++..++.+|..+.+.... ....
T Consensus 175 ~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~ 254 (579)
T 3sqw_A 175 FVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAH 254 (579)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSC
T ss_pred cCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccc
Confidence 899999999999999999999988877653 378999999999999999999999888776654322 2233
Q ss_pred CceEEEEEEcCcc-hhH-HH---HHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhc---CCceEEEeCCCCHHHHHHH
Q psy7557 813 HTVTQKIIILDED-EKK-DW---LMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQ---YRKSCSLYGDLSQEDREIA 884 (936)
Q Consensus 813 ~~~~~~~~~~~~~-~k~-~~---l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~---~~~~~~~h~~l~~~~R~~~ 884 (936)
..+.+.+...... .+. .. +...+... ....++||||+++..|+.++..|... +..+..+||+|++.+|..+
T Consensus 255 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~ 333 (579)
T 3sqw_A 255 ERIDQSVVISEKFANSIFAAVEHIKKQIKER-DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSL 333 (579)
T ss_dssp TTEEEEEEEESSTTHHHHHHHHHHHHHHHHT-TTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHH
T ss_pred cccceEEEEecchhhhHHHHHHHHHHHHhhc-CCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHH
Confidence 4455555555432 222 22 22222221 45679999999999999999999887 8899999999999999999
Q ss_pred HHHhhcCCCcEEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 885 LEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 885 ~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
++.|++|+.+|||||+++++|||+|++++||+||+|.+..+|+||+|||||+
T Consensus 334 ~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~ 385 (579)
T 3sqw_A 334 VKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARS 385 (579)
T ss_dssp HHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCT
T ss_pred HHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccC
Confidence 9999999999999999999999999999999999999999999999999995
No 25
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2.3e-48 Score=460.70 Aligned_cols=338 Identities=29% Similarity=0.448 Sum_probs=280.9
Q ss_pred ChHHh---hcCCHHHHHHHHhCCCCCCcHHHHHHHHhhh--cCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCC
Q psy7557 596 SFKQA---FQHYPEILRQLENLSFTTPSPIQAQAWPILM--SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAG 670 (936)
Q Consensus 596 ~f~~~---~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l--~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~ 670 (936)
+|.++ ..+++.+++.|.++||..|+|+|.++++.++ .|+|++++||||||||++|++|++..+..... ....+
T Consensus 69 ~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~--~~~~~ 146 (563)
T 3i5x_A 69 TLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF--DSQYM 146 (563)
T ss_dssp CHHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT--SSTTS
T ss_pred CHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccc--cccCC
Confidence 45543 3488999999999999999999999999999 67899999999999999999999988765432 12346
Q ss_pred CEEEEEecCHHHHHHHHHHHHhc-----cCCCCEEEEEECCccchHHHHHHh-cCceEEEeCchHHHHHHHcC-CCCCCC
Q psy7557 671 PSVLVMAPTRELATQIEREVNKI-----DYKGLKAVCVYGGKELEPQLEKIR-EGCHILIATPGRLNDFVSRA-SIDLKA 743 (936)
Q Consensus 671 ~~~lil~Pt~~La~Q~~~~~~~~-----~~~~~~~~~~~gg~~~~~~~~~l~-~~~~IiV~Tp~~l~~~l~~~-~~~~~~ 743 (936)
+++|||+||++||.|+.+.++++ ......+..++||.....+...+. .+++|+|+||++|.+++.+. ...++.
T Consensus 147 ~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 226 (563)
T 3i5x_A 147 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRF 226 (563)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTT
T ss_pred eeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhcccccccc
Confidence 78999999999999999999986 234577888999988877776664 47999999999999988765 345788
Q ss_pred ceEEEEcccchhccCCCHHHHHHHhhhc-------CCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCC---cccCC
Q psy7557 744 VSFVVLDEADRMLDLGFEPQINKTSIYI-------NPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLD---LAATH 813 (936)
Q Consensus 744 i~~lViDEah~l~~~~~~~~~~~i~~~~-------~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~ 813 (936)
+++|||||||++++++|...+..+...+ .+.+|+++||||+++.+..++..++.++..+.+.... .....
T Consensus 227 ~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (563)
T 3i5x_A 227 VDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHE 306 (563)
T ss_dssp CCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCT
T ss_pred ceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccc
Confidence 9999999999999999999998887665 3478999999999999999999999888776654322 12233
Q ss_pred ceEEEEEEcCcc-hhHH----HHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhc---CCceEEEeCCCCHHHHHHHH
Q psy7557 814 TVTQKIIILDED-EKKD----WLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQ---YRKSCSLYGDLSQEDREIAL 885 (936)
Q Consensus 814 ~~~~~~~~~~~~-~k~~----~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~---~~~~~~~h~~l~~~~R~~~~ 885 (936)
.+.+.+...... .+.. .+...+... ....++||||+++..|+.++..|... +..+..+||+|++.+|..++
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~ 385 (563)
T 3i5x_A 307 RIDQSVVISEKFANSIFAAVEHIKKQIKER-DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLV 385 (563)
T ss_dssp TEEEEEEEESSTTHHHHHHHHHHHHHHHHT-TTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHH
T ss_pred cCceEEEECchhHhhHHHHHHHHHHHHhhc-CCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHH
Confidence 455555555432 2222 222222222 45679999999999999999999887 88999999999999999999
Q ss_pred HHhhcCCCcEEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 886 EDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 886 ~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
+.|++|+.+|||||+++++|||+|++++||+||+|.+..+|+||+|||||+
T Consensus 386 ~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~ 436 (563)
T 3i5x_A 386 KRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARS 436 (563)
T ss_dssp HHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCT
T ss_pred HHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccC
Confidence 999999999999999999999999999999999999999999999999995
No 26
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=2.9e-48 Score=439.72 Aligned_cols=329 Identities=30% Similarity=0.536 Sum_probs=285.4
Q ss_pred cCChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcC--CcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCC
Q psy7557 594 VTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSG--HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGP 671 (936)
Q Consensus 594 ~~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g--~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~ 671 (936)
..+|++ +++++.+++.|.++||..|+|+|.++++.++++ +|++++||||||||++|++|++..+... ..++
T Consensus 4 ~~~f~~-~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~------~~~~ 76 (395)
T 3pey_A 4 AKSFDE-LGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE------DASP 76 (395)
T ss_dssp CCSSTT-SCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT------CCSC
T ss_pred ccCHhh-CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC------CCCc
Confidence 356766 789999999999999999999999999999988 9999999999999999999999776431 3567
Q ss_pred EEEEEecCHHHHHHHHHHHHhcc-CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEc
Q psy7557 672 SVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLD 750 (936)
Q Consensus 672 ~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViD 750 (936)
++||++||++|+.|+.+.++++. ..++.+...+++...... ..+++|+|+||+++.+.+.+....+.++++||+|
T Consensus 77 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiD 152 (395)
T 3pey_A 77 QAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLD 152 (395)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEE
T ss_pred cEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEE
Confidence 89999999999999999999975 456777777776543322 2358999999999999998888889999999999
Q ss_pred ccchhcc-CCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEc-CcchhH
Q psy7557 751 EADRMLD-LGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIIL-DEDEKK 828 (936)
Q Consensus 751 Eah~l~~-~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~k~ 828 (936)
|||++.+ .++...+..+...++++.|++++|||+++.+..+...++.++..+........ ...+.+.+..+ ....+.
T Consensus 153 Eah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 231 (395)
T 3pey_A 153 EADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVN-VDAIKQLYMDCKNEADKF 231 (395)
T ss_dssp THHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCS-CTTEEEEEEECSSHHHHH
T ss_pred ChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccc-cccccEEEEEcCchHHHH
Confidence 9999987 67888888999999999999999999999999999999988887766554432 33455555544 445666
Q ss_pred HHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCC
Q psy7557 829 DWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDV 908 (936)
Q Consensus 829 ~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidi 908 (936)
..+..++... ..+++||||+++..++.++..|...+..+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+
T Consensus 232 ~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 309 (395)
T 3pey_A 232 DVLTELYGLM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDI 309 (395)
T ss_dssp HHHHHHHTTT--TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCC
T ss_pred HHHHHHHHhc--cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCc
Confidence 6676666654 45799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEccCCC------ChhhhHhhhhhccCC
Q psy7557 909 PDLTHVINYDFPS------HIEEYVHRVGRTGEF 936 (936)
Q Consensus 909 p~v~~VI~~d~p~------s~~~yiqr~GRaGR~ 936 (936)
|++++||+||+|. |..+|+||+||+||.
T Consensus 310 p~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~ 343 (395)
T 3pey_A 310 PTVSMVVNYDLPTLANGQADPATYIHRIGRTGRF 343 (395)
T ss_dssp TTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCT
T ss_pred ccCCEEEEcCCCCCCcCCCCHHHhhHhccccccC
Confidence 9999999999998 999999999999995
No 27
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=6.3e-50 Score=464.08 Aligned_cols=332 Identities=30% Similarity=0.499 Sum_probs=175.8
Q ss_pred CCcCChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcC--CcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCC
Q psy7557 592 NPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSG--HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERA 669 (936)
Q Consensus 592 ~~~~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g--~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~ 669 (936)
.++.+|++ +++++.+++.|+++||..|+|+|.++++.+++| +|++++||||||||++|++|++..+.. ...
T Consensus 89 ~~~~~f~~-~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~------~~~ 161 (479)
T 3fmp_B 89 YSVKSFEE-LRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP------ANK 161 (479)
T ss_dssp CCCCCSGG-GTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCT------TSC
T ss_pred cCcCCHHH-cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhh------cCC
Confidence 34667887 689999999999999999999999999999987 999999999999999999999876633 234
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhccC--CCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHc-CCCCCCCceE
Q psy7557 670 GPSVLVMAPTRELATQIEREVNKIDY--KGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSR-ASIDLKAVSF 746 (936)
Q Consensus 670 ~~~~lil~Pt~~La~Q~~~~~~~~~~--~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~-~~~~~~~i~~ 746 (936)
++++||++||++||.|+.+.++++.. .++.+....++...... ...+++|+|+||++|.+++.+ ..+.++++++
T Consensus 162 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~ 238 (479)
T 3fmp_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKV 238 (479)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCE
T ss_pred CCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCE
Confidence 66899999999999999999998753 46777778777655433 133579999999999999866 4566799999
Q ss_pred EEEcccchhcc-CCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcC-c
Q psy7557 747 VVLDEADRMLD-LGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD-E 824 (936)
Q Consensus 747 lViDEah~l~~-~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~ 824 (936)
|||||||++++ .++...+..+...+++++|++++|||++..+..++..++.+|..+....... ....+.+.+..+. .
T Consensus 239 iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~ 317 (479)
T 3fmp_B 239 FVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE-TLDTIKQYYVLCSSR 317 (479)
T ss_dssp EEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC--------------------
T ss_pred EEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEecccccc-CcCCceEEEEEeCCH
Confidence 99999999987 6788888889999999999999999999999999999999998887765443 2334445444444 3
Q ss_pred chhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCcc
Q psy7557 825 DEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASR 904 (936)
Q Consensus 825 ~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~ 904 (936)
..+...+..++... ..+++||||+++..|+.++..|...+..+..+||+|++.+|..+++.|++|+.+|||||+++++
T Consensus 318 ~~~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~ 395 (479)
T 3fmp_B 318 DEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCAR 395 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcccccc
Confidence 45666666666554 4578999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEccCC------CChhhhHhhhhhccCC
Q psy7557 905 GLDVPDLTHVINYDFP------SHIEEYVHRVGRTGEF 936 (936)
Q Consensus 905 Gidip~v~~VI~~d~p------~s~~~yiqr~GRaGR~ 936 (936)
|+|+|++++||+||+| .+..+|+||+|||||+
T Consensus 396 GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~ 433 (479)
T 3fmp_B 396 GIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRF 433 (479)
T ss_dssp --------------------------------------
T ss_pred CCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccC
Confidence 9999999999999999 5678999999999995
No 28
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.7e-47 Score=427.17 Aligned_cols=325 Identities=33% Similarity=0.558 Sum_probs=290.8
Q ss_pred CChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcC-CcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEE
Q psy7557 595 TSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSG-HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSV 673 (936)
Q Consensus 595 ~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g-~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~ 673 (936)
.+|++ +++++.+.+.|+++||..|+|+|.++++.++++ +++++.+|||||||++|++|++..+.. ..++++
T Consensus 6 ~~f~~-~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~-------~~~~~~ 77 (367)
T 1hv8_A 6 MNFNE-LNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE-------NNGIEA 77 (367)
T ss_dssp CCGGG-SSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS-------SSSCCE
T ss_pred Cchhh-cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc-------cCCCcE
Confidence 45776 689999999999999999999999999999988 699999999999999999999876532 357789
Q ss_pred EEEecCHHHHHHHHHHHHhcc-CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEccc
Q psy7557 674 LVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEA 752 (936)
Q Consensus 674 lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEa 752 (936)
||++|+++|+.|+.+.++++. ..++.+..++||.....+...+. +++|+|+||+++.+.+..+...+.+++++|+|||
T Consensus 78 lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEa 156 (367)
T 1hv8_A 78 IILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEA 156 (367)
T ss_dssp EEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETH
T ss_pred EEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCc
Confidence 999999999999999999974 45788899999988776666554 6899999999999999988888999999999999
Q ss_pred chhccCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHH
Q psy7557 753 DRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLM 832 (936)
Q Consensus 753 h~l~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 832 (936)
|++.+++|...+..+....++..+++++|||++.........++.++..+.... ...+.+.+..+....+...+.
T Consensus 157 h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~ 231 (367)
T 1hv8_A 157 DEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI-----NANIEQSYVEVNENERFEALC 231 (367)
T ss_dssp HHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS-----SSSSEEEEEECCGGGHHHHHH
T ss_pred hHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC-----CCCceEEEEEeChHHHHHHHH
Confidence 999999999999999998989999999999999999888888887776554432 235666777778888888887
Q ss_pred HHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCC
Q psy7557 833 EFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLT 912 (936)
Q Consensus 833 ~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~ 912 (936)
.++. ....++||||+++..++.++..|...+..+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 232 ~~l~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~ 308 (367)
T 1hv8_A 232 RLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLN 308 (367)
T ss_dssp HHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCS
T ss_pred HHHh---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCC
Confidence 7776 3567899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCChhhhHhhhhhccCC
Q psy7557 913 HVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 913 ~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
+||++++|.|..+|+||+||+||.
T Consensus 309 ~Vi~~~~~~s~~~~~Q~~GR~~R~ 332 (367)
T 1hv8_A 309 CVINYHLPQNPESYMHRIGRTGRA 332 (367)
T ss_dssp EEEESSCCSCHHHHHHHSTTTCCS
T ss_pred EEEEecCCCCHHHhhhcccccccC
Confidence 999999999999999999999994
No 29
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-49 Score=460.57 Aligned_cols=365 Identities=27% Similarity=0.461 Sum_probs=260.3
Q ss_pred CCCcccChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcC--CcEEEEecCCCCcchhchHHHHHHhhcCCCCCCC
Q psy7557 70 IPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSG--HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISE 147 (936)
Q Consensus 70 ~p~p~~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g--~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~ 147 (936)
.|.++..|.. .++.+.+++.+.+.||..|+++|.+|++.+++| ++++++||||||||++|++|++..+...
T Consensus 114 ~p~~l~~~~~-~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~------ 186 (508)
T 3fho_A 114 XXXXXXXXXX-XXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS------ 186 (508)
T ss_dssp --------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT------
T ss_pred cccccccccc-cccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC------
Confidence 3444555544 467788999999999999999999999999998 9999999999999999999999876432
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHhcc-CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceE
Q psy7557 148 RAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSF 226 (936)
Q Consensus 148 ~~~~~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~ 226 (936)
..++++||++|+++|+.|+++.++++. ..++.+...+++..... ...+++|+|+||+++.+.+......+.++++
T Consensus 187 ~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~l 262 (508)
T 3fho_A 187 VPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQLDARDIKV 262 (508)
T ss_dssp CCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCE
T ss_pred CCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCCccccCCCE
Confidence 346789999999999999999999974 44566665555543322 2235899999999999999888888999999
Q ss_pred EEEccchhhhc-CCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEe-Cc
Q psy7557 227 VVLDEADRMLD-LGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIIL-DE 304 (936)
Q Consensus 227 lViDEah~l~~-~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~ 304 (936)
||+||||++.+ .++...+..+...++++.|++++|||+++.+..+...++.++..+........ ...+.+.+..+ ..
T Consensus 263 IIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~ 341 (508)
T 3fho_A 263 FVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELS-VEGIKQLYMDCQSE 341 (508)
T ss_dssp EEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC-----CCCCEEEEC--C
T ss_pred EEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCC-cccceEEEEECCch
Confidence 99999999988 78999999999999999999999999999999999999999887766554432 23344444444 34
Q ss_pred hhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEeccccc
Q psy7557 305 DEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASR 384 (936)
Q Consensus 305 ~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~ 384 (936)
..+...+..++... ..+++||||+++..+..++..|...+..+..+||+|++.+|..+++.|++|+.+|||||+++++
T Consensus 342 ~~k~~~l~~ll~~~--~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~ 419 (508)
T 3fho_A 342 EHKYNVLVELYGLL--TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIAR 419 (508)
T ss_dssp HHHHHHHHHHHC-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC----
T ss_pred HHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhc
Confidence 55666677766654 4689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEecCC------CCccccccCCCCcccCCCceeEEEEecc-cChhhHHhHHHHHhhcCCcc
Q psy7557 385 GLDVPDLTHVINYDFP------SHIEEYVHRVGRTGRAGKSGESITLMTR-KDWSHAHEIIPILEEGGHES 448 (936)
Q Consensus 385 GiDip~v~~VI~~d~p------~s~~~y~qr~GRagR~g~~g~~~~~~~~-~~~~~~~~l~~~l~~~~~~~ 448 (936)
|+|+|++++||++|+| .+..+|+||+||+||.|+.|.+++|+++ .+...+..+.+.+...-...
T Consensus 420 GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l 490 (508)
T 3fho_A 420 GIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRV 490 (508)
T ss_dssp -CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC--
T ss_pred CCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccC
Confidence 9999999999999999 8899999999999999999999999985 56777777777766554433
No 30
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=2.4e-48 Score=450.89 Aligned_cols=340 Identities=20% Similarity=0.311 Sum_probs=277.3
Q ss_pred ChHHhhcCCHHHHHHHHh-CCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEE
Q psy7557 76 SFKQAFQHYPEILRQLEN-LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVL 154 (936)
Q Consensus 76 ~f~~~~~~~~~l~~~l~~-~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~l 154 (936)
+|++ +++++.+.+.|++ +||.+|+|+|.++|+.+++|+|++++||||+|||++|++|++.. .+.+|
T Consensus 3 ~fe~-l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------------~g~~l 69 (523)
T 1oyw_A 3 QAEV-LNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------------NGLTV 69 (523)
T ss_dssp CCCC-SSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------------SSEEE
T ss_pred Chhh-CCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------------CCCEE
Confidence 4555 5788889999998 89999999999999999999999999999999999999998832 35799
Q ss_pred EEcCcHHHHHHHHHHHHhccCCCCEEEEEeCCccchHHH---HHhhc-CCcEEEeCCchhHHHHHcCCcCCCCceEEEEc
Q psy7557 155 VMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQL---EKIRE-GCHILIATPGRLNDFVSRASIDLKAVSFVVLD 230 (936)
Q Consensus 155 il~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~~~~-~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViD 230 (936)
|++|+++|+.|+.+.++.+ ++++..+.|+....... ..+.. .++|+|+||++|........+...++++||||
T Consensus 70 vi~P~~aL~~q~~~~l~~~---gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViD 146 (523)
T 1oyw_A 70 VVSPLISLMKDQVDQLQAN---GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVD 146 (523)
T ss_dssp EECSCHHHHHHHHHHHHHT---TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEES
T ss_pred EECChHHHHHHHHHHHHHc---CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEe
Confidence 9999999999999999875 67888888876654332 23333 48999999999853322223345789999999
Q ss_pred cchhhhcCC--CHHHHHHHHhh--cCCCCcEEEEEeccchHHHHHH-HHh-cCCCEEEEeCCCCcccCCceEEEEEEeCc
Q psy7557 231 EADRMLDLG--FEPQINKTSIY--INPNRQTVMTSATWNKDVQRVA-KKY-MVNPVKVNVGSLDLAATHTVTQKIIILDE 304 (936)
Q Consensus 231 Eah~l~~~~--~~~~~~~i~~~--~~~~~q~~~~SAT~~~~~~~~~-~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 304 (936)
|||++.+|| |++.+..+... ..++.+++++|||+++.+.... ..+ +.+|..+. .... ..++. +.....
T Consensus 147 EaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~-~~~~---r~~l~--~~v~~~ 220 (523)
T 1oyw_A 147 EAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-SSFD---RPNIR--YMLMEK 220 (523)
T ss_dssp SGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEE-CCCC---CTTEE--EEEEEC
T ss_pred CccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEe-CCCC---CCceE--EEEEeC
Confidence 999999988 77776655322 2357899999999998876543 333 34554433 2221 22233 333444
Q ss_pred hhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEeccccc
Q psy7557 305 DEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASR 384 (936)
Q Consensus 305 ~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~ 384 (936)
..+...+.+++... .+.++||||++++.++.+++.|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++
T Consensus 221 ~~~~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~ 298 (523)
T 1oyw_A 221 FKPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGM 298 (523)
T ss_dssp SSHHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCT
T ss_pred CCHHHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhC
Confidence 56677788887764 5679999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHHH
Q psy7557 385 GLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIP 439 (936)
Q Consensus 385 GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~ 439 (936)
|||+|++++||+||+|.|+++|+||+|||||.|..|.|++|+++.|....+.++.
T Consensus 299 GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 299 GINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp TTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred CCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999988776665554
No 31
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=8.2e-49 Score=443.98 Aligned_cols=335 Identities=33% Similarity=0.564 Sum_probs=185.6
Q ss_pred CCCcCChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCC
Q psy7557 591 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAG 670 (936)
Q Consensus 591 p~~~~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~ 670 (936)
+.+..+|++ +++++.+++.|.++||..|+|+|.++++.+++|+|+++++|||+|||++|++|++..+... ..+
T Consensus 17 ~~~~~~f~~-~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~------~~~ 89 (394)
T 1fuu_A 17 DKVVYKFDD-MELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS------VKA 89 (394)
T ss_dssp CCCCCSSGG-GCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT------CCS
T ss_pred ccccCChhh-cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc------CCC
Confidence 455677888 6899999999999999999999999999999999999999999999999999999776431 356
Q ss_pred CEEEEEecCHHHHHHHHHHHHhcc-CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEE
Q psy7557 671 PSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVL 749 (936)
Q Consensus 671 ~~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lVi 749 (936)
+++||++||++|+.|+.+.+.++. ..++++..++|+.........+. +++|+|+||+++.+.+.+....+.++++||+
T Consensus 90 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIi 168 (394)
T 1fuu_A 90 PQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 168 (394)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 799999999999999999999874 45788999999887766655554 5899999999999999888888899999999
Q ss_pred cccchhccCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCc-chhH
Q psy7557 750 DEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDE-DEKK 828 (936)
Q Consensus 750 DEah~l~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~k~ 828 (936)
||||++.++++...+..+...+++..|++++|||+++........++.+|..+......... ..+.+.+..+.. ..+.
T Consensus 169 DEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 247 (394)
T 1fuu_A 169 DEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTL-EGIKQFYVNVEEEEYKY 247 (394)
T ss_dssp ETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----------------------
T ss_pred EChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccC-CCceEEEEEcCchhhHH
Confidence 99999999999999999999999999999999999999999999999999888776543222 223333333333 3355
Q ss_pred HHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCC
Q psy7557 829 DWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDV 908 (936)
Q Consensus 829 ~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidi 908 (936)
..+..++... ..+++||||+++..++.++..|...+..+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+
T Consensus 248 ~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi 325 (394)
T 1fuu_A 248 ECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDV 325 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhcC--CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCc
Confidence 6666666554 45789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 909 PDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 909 p~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
|++++||+||+|.+..+|+||+||+||.
T Consensus 326 ~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~ 353 (394)
T 1fuu_A 326 QQVSLVINYDLPANKENYIHRIGRGGRF 353 (394)
T ss_dssp ----------------------------
T ss_pred ccCCEEEEeCCCCCHHHHHHHcCcccCC
Confidence 9999999999999999999999999994
No 32
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1e-47 Score=437.26 Aligned_cols=326 Identities=21% Similarity=0.281 Sum_probs=267.0
Q ss_pred HHHHHHHh-CCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHH
Q psy7557 86 EILRQLEN-LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELAT 164 (936)
Q Consensus 86 ~l~~~l~~-~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~ 164 (936)
.+.+.+++ .|| +|+|+|.++++.+++|+|++++||||||||++|++|++... ..++++||++||++||.
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~---------~~~~~~lil~Pt~~L~~ 78 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA---------RKGKKSALVFPTVTLVK 78 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH---------TTTCCEEEEESSHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh---------cCCCEEEEEECCHHHHH
Confidence 34555555 466 89999999999999999999999999999999999887655 34679999999999999
Q ss_pred HHHHHHHhccCCCCEEEEEeCCccc---hHHHHHhhcC-CcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhh----
Q psy7557 165 QIEREVNKIDYKGLKAVCVYGGKEI---EPQLEKIREG-CHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRML---- 236 (936)
Q Consensus 165 Q~~~~~~~~~~~~~~~~~~~gg~~~---~~~~~~~~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~---- 236 (936)
|+++.++++...++++..++||... ..++..+..+ ++|+|+||++|.+++.. +.+.++++||+||||++.
T Consensus 79 q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~ 156 (414)
T 3oiy_A 79 QTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASR 156 (414)
T ss_dssp HHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHH
T ss_pred HHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccc
Confidence 9999999975578899999999887 6666777777 99999999999887764 567799999999998665
Q ss_pred ------c-CCCHHH-HHHHHhhcC-----------CCCcEEEEEec-cchHHH-HHHHHhcCCCEEEEeCCCCcccCCce
Q psy7557 237 ------D-LGFEPQ-INKTSIYIN-----------PNRQTVMTSAT-WNKDVQ-RVAKKYMVNPVKVNVGSLDLAATHTV 295 (936)
Q Consensus 237 ------~-~~~~~~-~~~i~~~~~-----------~~~q~~~~SAT-~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~ 295 (936)
+ +||.+. +..++..++ ++.|++++||| +|..+. .+...++. +.+.... .....+
T Consensus 157 ~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~i 231 (414)
T 3oiy_A 157 NIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLV-SVARNI 231 (414)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCC-CCCCSE
T ss_pred hhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccc-cccccc
Confidence 4 788888 788887776 88999999999 565543 23333322 1111111 223446
Q ss_pred EEEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCcee-eecCCCCHHHHHHHHHHhhcCCcE
Q psy7557 296 TQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSC-SLYGDLSQEDREIALEDITSGYAR 374 (936)
Q Consensus 296 ~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~-~~h~~~~~~~R~~~~~~f~~g~~~ 374 (936)
.+.+..+ .+...+.+++... ++++||||+++..++.+++.|...++.+. .+||+ +|. ++.|++|+++
T Consensus 232 ~~~~~~~---~~~~~l~~~l~~~---~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~ 299 (414)
T 3oiy_A 232 THVRISS---RSKEKLVELLEIF---RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKIN 299 (414)
T ss_dssp EEEEESS---CCHHHHHHHHHHH---CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCS
T ss_pred hheeecc---CHHHHHHHHHHHc---CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCe
Confidence 6655544 4556677777764 48999999999999999999999999998 99995 444 9999999999
Q ss_pred EEEE----ecccccCCCCCC-CcEEEEecCC--CCccccccCCCCcccCC----CceeEEEEecccChhhHHhHHHHHh
Q psy7557 375 ICVA----TDVASRGLDVPD-LTHVINYDFP--SHIEEYVHRVGRTGRAG----KSGESITLMTRKDWSHAHEIIPILE 442 (936)
Q Consensus 375 vLva----T~~~~~GiDip~-v~~VI~~d~p--~s~~~y~qr~GRagR~g----~~g~~~~~~~~~~~~~~~~l~~~l~ 442 (936)
|||| |+++++|+|+|+ |++||+||+| .+..+|+||+|||||.| +.|.+++|+ +|...+..+.+.+.
T Consensus 300 vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 300 ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp EEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred EEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 9999 999999999999 9999999999 99999999999999997 589999999 66677777777666
No 33
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2.2e-46 Score=438.32 Aligned_cols=317 Identities=17% Similarity=0.248 Sum_probs=256.7
Q ss_pred hcCCHHHHHHHHh-CCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecC
Q psy7557 601 FQHYPEILRQLEN-LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPT 679 (936)
Q Consensus 601 ~~l~~~~~~~l~~-~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt 679 (936)
+++++.+.+.|++ +||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++. .++++|||+|+
T Consensus 26 ~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~------------~~g~~lVisP~ 93 (591)
T 2v1x_A 26 FPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC------------SDGFTLVICPL 93 (591)
T ss_dssp STTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT------------SSSEEEEECSC
T ss_pred CCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH------------cCCcEEEEeCH
Confidence 5677889999998 7999999999999999999999999999999999999999973 24689999999
Q ss_pred HHHHHHHHHHHHhccCCCCEEEEEECCccchHHHHH---H---hcCceEEEeCchHHH------HHHHcCCCCCCCceEE
Q psy7557 680 RELATQIEREVNKIDYKGLKAVCVYGGKELEPQLEK---I---REGCHILIATPGRLN------DFVSRASIDLKAVSFV 747 (936)
Q Consensus 680 ~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l---~~~~~IiV~Tp~~l~------~~l~~~~~~~~~i~~l 747 (936)
++|+.|+.+.+..+ ++++..++|+......... + ..+++|+|+||++|. +.+.+ ...+.++++|
T Consensus 94 ~~L~~q~~~~l~~~---gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~i~~i 169 (591)
T 2v1x_A 94 ISLMEDQLMVLKQL---GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARRFTRI 169 (591)
T ss_dssp HHHHHHHHHHHHHH---TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTCEEEE
T ss_pred HHHHHHHHHHHHhc---CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccCCcEE
Confidence 99999999999886 6788888888766544322 2 345899999999874 22222 3346789999
Q ss_pred EEcccchhccCC--CHHHHHHH--hhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcC
Q psy7557 748 VLDEADRMLDLG--FEPQINKT--SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD 823 (936)
Q Consensus 748 ViDEah~l~~~~--~~~~~~~i--~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 823 (936)
||||||++.++| |++.+..+ +....++.|++++|||+++.+...+..++..+....+... .....+...+....
T Consensus 170 ViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~--~~r~nl~~~v~~~~ 247 (591)
T 2v1x_A 170 AVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTAS--FNRPNLYYEVRQKP 247 (591)
T ss_dssp EEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECC--CCCTTEEEEEEECC
T ss_pred EEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecC--CCCcccEEEEEeCC
Confidence 999999999988 88877653 3344578999999999999888777766654322222211 11222333332222
Q ss_pred c--chhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEeccc
Q psy7557 824 E--DEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDV 901 (936)
Q Consensus 824 ~--~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~ 901 (936)
. ..+...+.+++... ...+++||||++++.++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||++
T Consensus 248 ~~~~~~~~~l~~~l~~~-~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a 326 (591)
T 2v1x_A 248 SNTEDFIEDIVKLINGR-YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVA 326 (591)
T ss_dssp SSHHHHHHHHHHHHTTT-TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTT
T ss_pred CcHHHHHHHHHHHHHHh-ccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEech
Confidence 1 23445555655543 25678999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 902 ASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 902 ~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
+++|||+|+|++||+|++|.|+++|+||+|||||.
T Consensus 327 ~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~ 361 (591)
T 2v1x_A 327 FGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRD 361 (591)
T ss_dssp SCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTT
T ss_pred hhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcC
Confidence 99999999999999999999999999999999994
No 34
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1e-45 Score=409.03 Aligned_cols=309 Identities=31% Similarity=0.555 Sum_probs=268.5
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHH
Q psy7557 603 HYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTREL 682 (936)
Q Consensus 603 l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~L 682 (936)
+++.+.+.|+++||..|+|+|.++++.+++|+++++.+|||+|||++|++|++.. ++++||++|+++|
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------------~~~~liv~P~~~L 68 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------------GMKSLVVTPTREL 68 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------------TCCEEEECSSHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh------------cCCEEEEeCCHHH
Confidence 4678999999999999999999999999999999999999999999999998742 5689999999999
Q ss_pred HHHHHHHHHhcc-CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCH
Q psy7557 683 ATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFE 761 (936)
Q Consensus 683 a~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~ 761 (936)
+.|+.+.++++. ..+.++..++|+.....+...+. +++|+|+||+++.+.+.+....+.+++++|+||||++.++++.
T Consensus 69 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~ 147 (337)
T 2z0m_A 69 TRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFI 147 (337)
T ss_dssp HHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCH
T ss_pred HHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccH
Confidence 999999999874 45788899999888776665554 4899999999999998888778899999999999999999999
Q ss_pred HHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHHHHhccCC
Q psy7557 762 PQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEE 841 (936)
Q Consensus 762 ~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~ 841 (936)
..+..+....+...+++++|||++.........++.++..+... .....+.+.+.......+.. ...+.. ..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~ 219 (337)
T 2z0m_A 148 DDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC----IGLANVEHKFVHVKDDWRSK--VQALRE--NK 219 (337)
T ss_dssp HHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS----GGGGGEEEEEEECSSSSHHH--HHHHHT--CC
T ss_pred HHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc----cccCCceEEEEEeChHHHHH--HHHHHh--CC
Confidence 99999999998999999999999999999999888888766432 12234455555555443322 233433 35
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEEccCCC
Q psy7557 842 RDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPS 921 (936)
Q Consensus 842 ~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~p~ 921 (936)
.+++||||++++.++.++..|. .+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|.
T Consensus 220 ~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~ 295 (337)
T 2z0m_A 220 DKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQ 295 (337)
T ss_dssp CSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCS
T ss_pred CCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCC
Confidence 6789999999999999988775 688999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhHhhhhhccCC
Q psy7557 922 HIEEYVHRVGRTGEF 936 (936)
Q Consensus 922 s~~~yiqr~GRaGR~ 936 (936)
|..+|+||+||+||.
T Consensus 296 s~~~~~Q~~GR~gR~ 310 (337)
T 2z0m_A 296 DLRTYIHRIGRTGRM 310 (337)
T ss_dssp SHHHHHHHHTTBCGG
T ss_pred CHHHhhHhcCccccC
Confidence 999999999999994
No 35
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=2.5e-46 Score=434.58 Aligned_cols=381 Identities=18% Similarity=0.193 Sum_probs=292.1
Q ss_pred hhhcccCCccccccCcCCccccCCCHHHHHHHHhhCCCceEEeecCCCccCCCCCCCCCCcccChHHhhcCCHHHHH---
Q psy7557 13 RDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILR--- 89 (936)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~f~~~~~~~~~l~~--- 89 (936)
.....++.++.+.++...+++..+++++...++.++... + ..| .++++. .|+.+.
T Consensus 16 ~r~~k~~~~~~~~in~~~~~~~~lsd~el~~~t~~~~~~-~----~~g--------------~~ld~~---l~ea~a~vr 73 (844)
T 1tf5_A 16 KRTLNRYEKIANDIDAIRGDYENLSDDALKHKTIEFKER-L----EKG--------------ATTDDL---LVEAFAVVR 73 (844)
T ss_dssp -CCCCHHHHHHHHHHHTTHHHHTCCHHHHHHHHHHHHHH-H----HTT--------------CCHHHH---HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhHHHHhCCHHHHHHHHHHHHHH-H----hcC--------------CChHHH---HHHHHHHHH
Confidence 344567778888999999999999999998776554210 0 011 013332 122222
Q ss_pred -H-HHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHH
Q psy7557 90 -Q-LENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIE 167 (936)
Q Consensus 90 -~-l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~ 167 (936)
+ ...+|| +|||+|..++|.+++|+ |+.|+||+|||++|.+|++...+ .++.++||+||++||.|++
T Consensus 74 ea~~r~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL---------~g~~vlVltptreLA~qd~ 141 (844)
T 1tf5_A 74 EASRRVTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL---------TGKGVHVVTVNEYLASRDA 141 (844)
T ss_dssp HHHHHHHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT---------TSSCEEEEESSHHHHHHHH
T ss_pred HHHHHHcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH---------cCCCEEEEeCCHHHHHHHH
Confidence 1 225899 99999999999999999 99999999999999999986542 3568999999999999999
Q ss_pred HHHHhc-cCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchh-HHHHHcC------CcCCCCceEEEEccchhhh-cC
Q psy7557 168 REVNKI-DYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRL-NDFVSRA------SIDLKAVSFVVLDEADRML-DL 238 (936)
Q Consensus 168 ~~~~~~-~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~------~~~~~~~~~lViDEah~l~-~~ 238 (936)
+.+..+ ...|+++.+++||.+... .....++||+||||++| .|++..+ .+.++.+.++|+||||+|+ |+
T Consensus 142 e~~~~l~~~lgl~v~~i~gg~~~~~--r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDe 219 (844)
T 1tf5_A 142 EQMGKIFEFLGLTVGLNLNSMSKDE--KREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDE 219 (844)
T ss_dssp HHHHHHHHHTTCCEEECCTTSCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTT
T ss_pred HHHHHHHhhcCCeEEEEeCCCCHHH--HHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhc
Confidence 999986 467999999999987543 33445799999999999 6666543 3567899999999999998 76
Q ss_pred C---------------CHHHHHHHHhhcC---------CCCcEE-----------------EEEeccch---HHHHH--H
Q psy7557 239 G---------------FEPQINKTSIYIN---------PNRQTV-----------------MTSATWNK---DVQRV--A 272 (936)
Q Consensus 239 ~---------------~~~~~~~i~~~~~---------~~~q~~-----------------~~SAT~~~---~~~~~--~ 272 (936)
+ |...+..+...++ +.+|++ +||||++. .+... +
T Consensus 220 a~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A 299 (844)
T 1tf5_A 220 ARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKA 299 (844)
T ss_dssp TTCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHH
T ss_pred cccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHH
Confidence 5 6788999998887 368887 89999874 33332 2
Q ss_pred HHhcC-CCEEE-------EeCC-----------------------------CCcc-------------------------
Q psy7557 273 KKYMV-NPVKV-------NVGS-----------------------------LDLA------------------------- 290 (936)
Q Consensus 273 ~~~~~-~~~~i-------~~~~-----------------------------~~~~------------------------- 290 (936)
..++. +...+ .++. ....
T Consensus 300 ~~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~t 379 (844)
T 1tf5_A 300 HVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKT 379 (844)
T ss_dssp HHTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGG
T ss_pred HHHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccch
Confidence 22321 21111 0000 0000
Q ss_pred ---------------cC--C---ce-EEEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCce
Q psy7557 291 ---------------AT--H---TV-TQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKS 349 (936)
Q Consensus 291 ---------------~~--~---~~-~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~ 349 (936)
.+ . .. .+.++.+...+|...+...+......+.++||||+|+..++.++..|...|+++
T Consensus 380 e~~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~ 459 (844)
T 1tf5_A 380 EEEEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPH 459 (844)
T ss_dssp GHHHHHHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCC
T ss_pred hHHHHHHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCE
Confidence 00 0 00 012456677888888888876543456789999999999999999999999999
Q ss_pred eeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCC--------CCcEEEEecCCCCccccccCCCCcccCCCcee
Q psy7557 350 CSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVP--------DLTHVINYDFPSHIEEYVHRVGRTGRAGKSGE 421 (936)
Q Consensus 350 ~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip--------~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~ 421 (936)
..+||++.+.+|..+.+.|+.| .|+||||+++||+||+ ++.+||||+.|.|...|+||+|||||.|.+|.
T Consensus 460 ~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~ 537 (844)
T 1tf5_A 460 QVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGI 537 (844)
T ss_dssp EEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEE
T ss_pred EEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCe
Confidence 9999999999888777777766 5999999999999999 88999999999999999999999999999999
Q ss_pred EEEEecccCh
Q psy7557 422 SITLMTRKDW 431 (936)
Q Consensus 422 ~~~~~~~~~~ 431 (936)
+++|++..|.
T Consensus 538 s~~~vs~eD~ 547 (844)
T 1tf5_A 538 TQFYLSMEDE 547 (844)
T ss_dssp EEEEEETTSS
T ss_pred EEEEecHHHH
Confidence 9999998773
No 36
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=4.4e-45 Score=423.57 Aligned_cols=317 Identities=20% Similarity=0.313 Sum_probs=255.8
Q ss_pred ChHHhhcCCHHHHHHHHh-CCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEE
Q psy7557 596 SFKQAFQHYPEILRQLEN-LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVL 674 (936)
Q Consensus 596 ~f~~~~~l~~~~~~~l~~-~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~l 674 (936)
+|++ +++++.+.+.|++ +||..|+|+|.++++.+++|+|+++++|||+|||++|++|++.. ++.+|
T Consensus 3 ~fe~-l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------------~g~~l 69 (523)
T 1oyw_A 3 QAEV-LNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------------NGLTV 69 (523)
T ss_dssp CCCC-SSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------------SSEEE
T ss_pred Chhh-CCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------------CCCEE
Confidence 3444 5678889999998 89999999999999999999999999999999999999998831 35799
Q ss_pred EEecCHHHHHHHHHHHHhccCCCCEEEEEECCccchHHH---HHHh-cCceEEEeCchHHHHHHHcCCCCCCCceEEEEc
Q psy7557 675 VMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQL---EKIR-EGCHILIATPGRLNDFVSRASIDLKAVSFVVLD 750 (936)
Q Consensus 675 il~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~-~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViD 750 (936)
|++|+++|+.|+.+.++.+ ++.+..++|+....... ..+. ..++|+|+||+++........+...++++||||
T Consensus 70 vi~P~~aL~~q~~~~l~~~---gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViD 146 (523)
T 1oyw_A 70 VVSPLISLMKDQVDQLQAN---GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVD 146 (523)
T ss_dssp EECSCHHHHHHHHHHHHHT---TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEES
T ss_pred EECChHHHHHHHHHHHHHc---CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEe
Confidence 9999999999999998875 67788888876654432 2222 348999999999853222222345789999999
Q ss_pred ccchhccCC--CHHHHHHHhhh--cCCCceEEEEEecCChHHHH-HHHHhc-CCCeEEEeCCCCcccCCceEEEEEEcCc
Q psy7557 751 EADRMLDLG--FEPQINKTSIY--INPNRQTVMTSATWNKDVQR-VAKKYM-VNPVKVNVGSLDLAATHTVTQKIIILDE 824 (936)
Q Consensus 751 Eah~l~~~~--~~~~~~~i~~~--~~~~~q~v~~SAT~~~~~~~-~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 824 (936)
|||++.++| |++.+..+... ..++.+++++|||+++.+.. +...+. .+|..+ ..... ...+. +.+...
T Consensus 147 EaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~~~---r~~l~--~~v~~~ 220 (523)
T 1oyw_A 147 EAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSFD---RPNIR--YMLMEK 220 (523)
T ss_dssp SGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEE-ECCCC---CTTEE--EEEEEC
T ss_pred CccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE-eCCCC---CCceE--EEEEeC
Confidence 999999887 77777665432 23678999999999987755 444443 445433 32221 12232 223344
Q ss_pred chhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCcc
Q psy7557 825 DEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASR 904 (936)
Q Consensus 825 ~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~ 904 (936)
..+...+..++... ..+++||||+|++.++.++..|...++.+..+||+|++++|..+++.|++|+.+|||||+++++
T Consensus 221 ~~~~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~ 298 (523)
T 1oyw_A 221 FKPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGM 298 (523)
T ss_dssp SSHHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCT
T ss_pred CCHHHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhC
Confidence 55667777777764 4578999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 905 GLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 905 Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
|||+|++++||+||+|.|.++|+||+|||||.
T Consensus 299 GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~ 330 (523)
T 1oyw_A 299 GINKPNVRFVVHFDIPRNIESYYQETGRAGRD 330 (523)
T ss_dssp TTCCTTCCEEEESSCCSSHHHHHHHHTTSCTT
T ss_pred CCCccCccEEEEECCCCCHHHHHHHhccccCC
Confidence 99999999999999999999999999999994
No 37
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.8e-46 Score=433.10 Aligned_cols=323 Identities=28% Similarity=0.487 Sum_probs=239.1
Q ss_pred hcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcC--CcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEec
Q psy7557 601 FQHYPEILRQLENLSFTTPSPIQAQAWPILMSG--HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAP 678 (936)
Q Consensus 601 ~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g--~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~P 678 (936)
.++++.+++.+...||..|+|+|.+|++.+++| ++++++||||||||++|++|++..+... ..++++||++|
T Consensus 124 ~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~------~~~~~vLvl~P 197 (508)
T 3fho_A 124 XXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS------VPKPQAICLAP 197 (508)
T ss_dssp ---------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT------CCSCCEEEECS
T ss_pred cccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC------CCCceEEEEEC
Confidence 357788999999999999999999999999998 9999999999999999999999876432 34678999999
Q ss_pred CHHHHHHHHHHHHhcc-CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhcc
Q psy7557 679 TRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLD 757 (936)
Q Consensus 679 t~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~ 757 (936)
+++|+.|+.+.++++. ..++.+...+++..... ...+++|+|+||+++.+.+.+....+.++++||+||||++.+
T Consensus 198 ~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~ 273 (508)
T 3fho_A 198 SRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLD 273 (508)
T ss_dssp CHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTT
T ss_pred cHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcc
Confidence 9999999999999974 34555555555443222 223689999999999999998888899999999999999987
Q ss_pred -CCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEc-CcchhHHHHHHHH
Q psy7557 758 -LGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIIL-DEDEKKDWLMEFF 835 (936)
Q Consensus 758 -~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l 835 (936)
.++...+..+...++++.|++++|||+++.+..+...+..++..+.......... .+.+.+..+ ....+...+..++
T Consensus 274 ~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~k~~~l~~ll 352 (508)
T 3fho_A 274 QQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVE-GIKQLYMDCQSEEHKYNVLVELY 352 (508)
T ss_dssp C--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC-----CCCCEEEEC--CHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcc-cceEEEEECCchHHHHHHHHHHH
Confidence 6799999999999999999999999999999999999999988776655443322 233333333 4556667777776
Q ss_pred HhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEE
Q psy7557 836 DNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVI 915 (936)
Q Consensus 836 ~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI 915 (936)
... ..+++||||+++..|+.++..|...+..+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 353 ~~~--~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI 430 (508)
T 3fho_A 353 GLL--TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVV 430 (508)
T ss_dssp C-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEE
T ss_pred Hhc--CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEE
Confidence 654 457899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCC------CChhhhHhhhhhccCC
Q psy7557 916 NYDFP------SHIEEYVHRVGRTGEF 936 (936)
Q Consensus 916 ~~d~p------~s~~~yiqr~GRaGR~ 936 (936)
+||+| .+..+|+||+|||||+
T Consensus 431 ~~~~p~~~~~~~s~~~~~Qr~GRagR~ 457 (508)
T 3fho_A 431 NYDMPLDQAGRPDPQTYLHRIGRTGRF 457 (508)
T ss_dssp C----CC-----CTHHHHHTTSCCC--
T ss_pred EECCCCcccCCCCHHHHHHHhhhcCCC
Confidence 99999 8899999999999995
No 38
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.9e-45 Score=446.44 Aligned_cols=332 Identities=18% Similarity=0.235 Sum_probs=272.5
Q ss_pred ChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHH-HhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEE
Q psy7557 76 SFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPI-LMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVL 154 (936)
Q Consensus 76 ~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~-~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~l 154 (936)
+|++ +++++.+.+.+++.||.+|+|+|.++++. +.+|+|++++||||||||++|.+|++..+.. .+++++
T Consensus 2 ~f~~-l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~~l 72 (720)
T 2zj8_A 2 RVDE-LRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT--------QGGKAV 72 (720)
T ss_dssp BGGG-CCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH--------HCSEEE
T ss_pred cHhh-cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh--------CCCEEE
Confidence 4666 68999999999999999999999999998 8899999999999999999999999977642 257999
Q ss_pred EEcCcHHHHHHHHHHHHhccCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchh
Q psy7557 155 VMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADR 234 (936)
Q Consensus 155 il~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~ 234 (936)
|++|+++||.|+++.++++...++++..++|+...... ...+++|+|+||++|..++.+....++++++||+||||+
T Consensus 73 ~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~ 149 (720)
T 2zj8_A 73 YIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHL 149 (720)
T ss_dssp EECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGG
T ss_pred EEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcc
Confidence 99999999999999998777678999999997665433 123589999999999888887766689999999999999
Q ss_pred hhcCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEE------EeC-----
Q psy7557 235 MLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKII------ILD----- 303 (936)
Q Consensus 235 l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~----- 303 (936)
+.++++...+..++..++++.|++++|||+++ ...+..++...+ +.... .+..+...+. ...
T Consensus 150 l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~~l~~~~--~~~~~----rp~~l~~~~~~~~~~~~~~~~~~~ 222 (720)
T 2zj8_A 150 IGSRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAEWLNAEL--IVSDW----RPVKLRRGVFYQGFVTWEDGSIDR 222 (720)
T ss_dssp GGCTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHHHTTEEE--EECCC----CSSEEEEEEEETTEEEETTSCEEE
T ss_pred cCCCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHHHhCCcc--cCCCC----CCCcceEEEEeCCeeeccccchhh
Confidence 99999999999998888778999999999984 456666543221 11110 1112222111 111
Q ss_pred chhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcC---------------------------------Ccee
Q psy7557 304 EDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQY---------------------------------RKSC 350 (936)
Q Consensus 304 ~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~---------------------------------~~~~ 350 (936)
...+...+.+.+. .++++||||++++.++.++..|.... ..+.
T Consensus 223 ~~~~~~~~~~~~~----~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~ 298 (720)
T 2zj8_A 223 FSSWEELVYDAIR----KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVA 298 (720)
T ss_dssp CSSTTHHHHHHHH----TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEE
T ss_pred hhHHHHHHHHHHh----CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCee
Confidence 1233344444433 46899999999999999999887531 2488
Q ss_pred eecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEE----ec----CCCCccccccCCCCcccCC--Cce
Q psy7557 351 SLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVIN----YD----FPSHIEEYVHRVGRTGRAG--KSG 420 (936)
Q Consensus 351 ~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~d----~p~s~~~y~qr~GRagR~g--~~g 420 (936)
.+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.| ..|
T Consensus 299 ~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G 378 (720)
T 2zj8_A 299 FHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVG 378 (720)
T ss_dssp EECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEE
T ss_pred eecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCc
Confidence 9999999999999999999999999999999999999999999998 77 5899999999999999998 579
Q ss_pred eEEEEecccC
Q psy7557 421 ESITLMTRKD 430 (936)
Q Consensus 421 ~~~~~~~~~~ 430 (936)
.|++++++.+
T Consensus 379 ~~~~l~~~~~ 388 (720)
T 2zj8_A 379 EGIIVSTSDD 388 (720)
T ss_dssp EEEEECSSSC
T ss_pred eEEEEecCcc
Confidence 9999999887
No 39
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=8.8e-45 Score=441.02 Aligned_cols=332 Identities=21% Similarity=0.310 Sum_probs=267.2
Q ss_pred cChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHH-HhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEE
Q psy7557 75 TSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPI-LMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSV 153 (936)
Q Consensus 75 ~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~-~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~ 153 (936)
.+|++ +++++.+.+.+++.||.+|+|+|.++++. +.+|+|++++||||||||++|.+|++..+.. .+.++
T Consensus 8 ~~~~~-l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~i 78 (715)
T 2va8_A 8 MPIED-LKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK--------NGGKA 78 (715)
T ss_dssp CBGGG-SSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH--------SCSEE
T ss_pred CcHHH-cCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH--------CCCeE
Confidence 46877 68999999999999999999999999999 7789999999999999999999999977642 35799
Q ss_pred EEEcCcHHHHHHHHHHHHhccCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccch
Q psy7557 154 LVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEAD 233 (936)
Q Consensus 154 lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah 233 (936)
+|++|+++||.|+++.++.+...|+++...+|+....... ..+++|+|+|||+|..++.+....++++++||+||||
T Consensus 79 l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H 155 (715)
T 2va8_A 79 IYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDAW---LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELH 155 (715)
T ss_dssp EEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCGG---GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGG
T ss_pred EEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchhh---cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechh
Confidence 9999999999999999977766789999999986654431 2368999999999999888876668999999999999
Q ss_pred hhhcCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEE------------EE
Q psy7557 234 RMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKI------------II 301 (936)
Q Consensus 234 ~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------------~~ 301 (936)
.+.+.++...+..+...++ +.|++++|||+++ ...++..+...+ +.... .+..+...+ ..
T Consensus 156 ~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~~l~~~~--~~~~~----r~~~l~~~~~~~~~~~~~~~~~~ 227 (715)
T 2va8_A 156 YLNDPERGPVVESVTIRAK-RRNLLALSATISN-YKQIAKWLGAEP--VATNW----RPVPLIEGVIYPERKKKEYNVIF 227 (715)
T ss_dssp GGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHHHHTCEE--EECCC----CSSCEEEEEEEECSSTTEEEEEE
T ss_pred hcCCcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHHHhCCCc--cCCCC----CCCCceEEEEecCCcccceeeec
Confidence 9998889998888887776 7999999999984 456666554221 11111 111111111 11
Q ss_pred eC--------chhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcC---------------------------
Q psy7557 302 LD--------EDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQY--------------------------- 346 (936)
Q Consensus 302 ~~--------~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~--------------------------- 346 (936)
.+ ...+...+.+.+ ..++++||||++++.++.++..|....
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 303 (715)
T 2va8_A 228 KDNTTKKVHGDDAIIAYTLDSL----SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDE 303 (715)
T ss_dssp TTSCEEEEESSSHHHHHHHHHH----TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHH
T ss_pred CcchhhhcccchHHHHHHHHHH----hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccc
Confidence 11 122333333333 357899999999999999999987642
Q ss_pred ---------CceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEE----ec-------CCCCcccc
Q psy7557 347 ---------RKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVIN----YD-------FPSHIEEY 406 (936)
Q Consensus 347 ---------~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~d-------~p~s~~~y 406 (936)
..+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.|..+|
T Consensus 304 ~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~ 383 (715)
T 2va8_A 304 KELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEY 383 (715)
T ss_dssp HHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHH
T ss_pred cHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHH
Confidence 24889999999999999999999999999999999999999999999999 99 89999999
Q ss_pred ccCCCCcccCC--CceeEEEEecccC
Q psy7557 407 VHRVGRTGRAG--KSGESITLMTRKD 430 (936)
Q Consensus 407 ~qr~GRagR~g--~~g~~~~~~~~~~ 430 (936)
+||+|||||.| ..|.|++++++.+
T Consensus 384 ~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 384 KQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp HHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred HHHhhhcCCCCCCCCceEEEEeCCch
Confidence 99999999998 4799999998765
No 40
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=2e-45 Score=444.92 Aligned_cols=331 Identities=20% Similarity=0.266 Sum_probs=266.4
Q ss_pred ChHHhhc--CCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEE
Q psy7557 76 SFKQAFQ--HYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSV 153 (936)
Q Consensus 76 ~f~~~~~--~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~ 153 (936)
+|++ ++ +++.+.+.+++.||.+|+|+|.++++.+++|+|++++||||||||++|.+|++..+. .++++
T Consensus 2 ~f~~-l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~---------~~~~~ 71 (702)
T 2p6r_A 2 KVEE-LAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI---------KGGKS 71 (702)
T ss_dssp CSHH-HHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHH---------TTCCE
T ss_pred chhh-hhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHH---------hCCcE
Confidence 3555 45 888999999999999999999999999999999999999999999999999997763 25689
Q ss_pred EEEcCcHHHHHHHHHHHHhccCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccch
Q psy7557 154 LVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEAD 233 (936)
Q Consensus 154 lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah 233 (936)
+|++|+++||.|+++.++++...|+++..++|+...... ...+++|+|+|||+|..++.+....++++++||+||||
T Consensus 72 l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H 148 (702)
T 2p6r_A 72 LYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIH 148 (702)
T ss_dssp EEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGG
T ss_pred EEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeee
Confidence 999999999999999998777778999999998765432 12368999999999999888776668999999999999
Q ss_pred hhhcCCCHHHHHHHHhhc---CCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEE------EEeCc
Q psy7557 234 RMLDLGFEPQINKTSIYI---NPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKI------IILDE 304 (936)
Q Consensus 234 ~l~~~~~~~~~~~i~~~~---~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------~~~~~ 304 (936)
++.++++...+..++..+ +++.|++++|||+++ ...++..+.. +. +.... .+..+...+ .....
T Consensus 149 ~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~l~~-~~-~~~~~----r~~~l~~~~~~~~~~~~~~~ 221 (702)
T 2p6r_A 149 LLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEWLDA-DY-YVSDW----RPVPLVEGVLCEGTLELFDG 221 (702)
T ss_dssp GGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHHTTC-EE-EECCC----CSSCEEEEEECSSEEEEEET
T ss_pred ecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHHhCC-Cc-ccCCC----CCccceEEEeeCCeeeccCc
Confidence 999988888888776655 578999999999984 5666665542 21 11111 111222211 11111
Q ss_pred h-------hhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhc------------------------------CC
Q psy7557 305 D-------EKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQ------------------------------YR 347 (936)
Q Consensus 305 ~-------~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~------------------------------~~ 347 (936)
. .+...+.+.+. .++++||||++++.++.++..|... +.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~----~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 297 (702)
T 2p6r_A 222 AFSTSRRVKFEELVEECVA----ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRK 297 (702)
T ss_dssp TEEEEEECCHHHHHHHHHH----TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHT
T ss_pred chhhhhhhhHHHHHHHHHh----cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhc
Confidence 1 13444444433 4689999999999999999988753 23
Q ss_pred ceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEE----ec---CCCCccccccCCCCcccCC--C
Q psy7557 348 KSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVIN----YD---FPSHIEEYVHRVGRTGRAG--K 418 (936)
Q Consensus 348 ~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~d---~p~s~~~y~qr~GRagR~g--~ 418 (936)
.+..+||+|++++|..+++.|++|.++|||||+++++|||+|++++||+ || .|.|..+|+||+|||||.| .
T Consensus 298 ~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~ 377 (702)
T 2p6r_A 298 GAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDE 377 (702)
T ss_dssp TCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCS
T ss_pred CeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCC
Confidence 5788999999999999999999999999999999999999999999998 76 7899999999999999998 5
Q ss_pred ceeEEEEecccC
Q psy7557 419 SGESITLMTRKD 430 (936)
Q Consensus 419 ~g~~~~~~~~~~ 430 (936)
.|.|++++++.+
T Consensus 378 ~G~~~~l~~~~~ 389 (702)
T 2p6r_A 378 RGEAIIIVGKRD 389 (702)
T ss_dssp CEEEEEECCGGG
T ss_pred CceEEEEecCcc
Confidence 799999999876
No 41
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-45 Score=458.97 Aligned_cols=324 Identities=20% Similarity=0.178 Sum_probs=259.1
Q ss_pred cCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHH
Q psy7557 82 QHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRE 161 (936)
Q Consensus 82 ~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~ 161 (936)
++++.+...+...++..|+|+|.+||+.+++|+|++++||||||||++|++|++..+ ..+++++|++||++
T Consensus 168 ~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l---------~~g~rvlvl~Ptra 238 (1108)
T 3l9o_A 168 PIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSL---------KNKQRVIYTSPIKA 238 (1108)
T ss_dssp TTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHH---------HTTCEEEEEESSHH
T ss_pred CCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHH---------hcCCeEEEEcCcHH
Confidence 444445555566667789999999999999999999999999999999999999876 34679999999999
Q ss_pred HHHHHHHHHHhccCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCH
Q psy7557 162 LATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFE 241 (936)
Q Consensus 162 La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~ 241 (936)
|+.|+++.++++.. .+..++|+.... .+++|+|+||++|.+++.++...+.++++|||||||++.+++|.
T Consensus 239 La~Q~~~~l~~~~~---~VglltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg 308 (1108)
T 3l9o_A 239 LSNQKYRELLAEFG---DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERG 308 (1108)
T ss_dssp HHHHHHHHHHHHTS---SEEEECSSCBCC-------CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHH
T ss_pred HHHHHHHHHHHHhC---CccEEeCccccC-------CCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchH
Confidence 99999999998533 577788887643 34899999999999999988877899999999999999999999
Q ss_pred HHHHHHHhhcCCCCcEEEEEeccchH--HHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEE---------eCc------
Q psy7557 242 PQINKTSIYINPNRQTVMTSATWNKD--VQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIII---------LDE------ 304 (936)
Q Consensus 242 ~~~~~i~~~~~~~~q~~~~SAT~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---------~~~------ 304 (936)
..+..++..+++.+|+++||||+|+. +......+..+|..+...... +..+.+.+.. ++.
T Consensus 309 ~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~r---p~pl~~~~~~~~~~~~~~~vd~~~~~~~ 385 (1108)
T 3l9o_A 309 VVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR---PTPLQHYLFPAHGDGIYLVVDEKSTFRE 385 (1108)
T ss_dssp HHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCC---SSCEEEEEEETTSSCCEEEEETTTEECH
T ss_pred HHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC---cccceEEEeecCCcceeeeeccccchhh
Confidence 99999999999999999999999864 345566666677666544322 2222222211 000
Q ss_pred ----------------------------------------hhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhh
Q psy7557 305 ----------------------------------------DEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLAC 344 (936)
Q Consensus 305 ----------------------------------------~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~ 344 (936)
..+...++..+.. ....++||||+++..|+.++..|..
T Consensus 386 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~--~~~~~vIVF~~sr~~~e~la~~L~~ 463 (1108)
T 3l9o_A 386 ENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK--KKYNPVIVFSFSKRDCEELALKMSK 463 (1108)
T ss_dssp HHHHHHHTTC-----------------------------CHHHHHHHHHHHHH--TTCCCEEEEESCHHHHHHHHHHTCS
T ss_pred hhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHh--cCCCCEEEEeCcHHHHHHHHHHHHh
Confidence 1122223333332 3467999999999999999999865
Q ss_pred cCCc---------------------------------------eeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccC
Q psy7557 345 QYRK---------------------------------------SCSLYGDLSQEDREIALEDITSGYARICVATDVASRG 385 (936)
Q Consensus 345 ~~~~---------------------------------------~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~G 385 (936)
.++. +..+||+|++.+|..+++.|++|.++|||||+++++|
T Consensus 464 ~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~G 543 (1108)
T 3l9o_A 464 LDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIG 543 (1108)
T ss_dssp HHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSC
T ss_pred ccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcC
Confidence 3322 6889999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEecCCC--------CccccccCCCCcccCC--CceeEEEEeccc
Q psy7557 386 LDVPDLTHVINYDFPS--------HIEEYVHRVGRTGRAG--KSGESITLMTRK 429 (936)
Q Consensus 386 iDip~v~~VI~~d~p~--------s~~~y~qr~GRagR~g--~~g~~~~~~~~~ 429 (936)
||+|++++||+++.|. |..+|+||+|||||.| ..|.|++++++.
T Consensus 544 IDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 544 LNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp CCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred CCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 9999999999877654 5566999999999999 679999988776
No 42
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=9.6e-45 Score=412.68 Aligned_cols=302 Identities=21% Similarity=0.304 Sum_probs=246.3
Q ss_pred HHHHHHHh-CCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHH
Q psy7557 606 EILRQLEN-LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELAT 684 (936)
Q Consensus 606 ~~~~~l~~-~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~ 684 (936)
++.+.+++ +|| .|+|+|.++++.+++|+|++++||||||||++|++|++... ..++++||++||++||.
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~---------~~~~~~lil~Pt~~L~~ 78 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA---------RKGKKSALVFPTVTLVK 78 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH---------TTTCCEEEEESSHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh---------cCCCEEEEEECCHHHHH
Confidence 34555555 477 89999999999999999999999999999999999987655 35789999999999999
Q ss_pred HHHHHHHhccCCCCEEEEEECCccc---hHHHHHHhcC-ceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhcc---
Q psy7557 685 QIEREVNKIDYKGLKAVCVYGGKEL---EPQLEKIREG-CHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLD--- 757 (936)
Q Consensus 685 Q~~~~~~~~~~~~~~~~~~~gg~~~---~~~~~~l~~~-~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~--- 757 (936)
|+.+.++++...++++..++||... ..+...+..+ ++|+|+||+++.+.+.. ..+.++++||+||||++.+
T Consensus 79 q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~ 156 (414)
T 3oiy_A 79 QTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASR 156 (414)
T ss_dssp HHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHH
T ss_pred HHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccc
Confidence 9999999986578899999999887 5566677776 99999999999887764 5677999999999987653
Q ss_pred --------CCCHHH-HHHHhhhcC-----------CCceEEEEEec-CChHHH-HHHHHhcCCCeEEEeCCCCcccCCce
Q psy7557 758 --------LGFEPQ-INKTSIYIN-----------PNRQTVMTSAT-WNKDVQ-RVAKKYMVNPVKVNVGSLDLAATHTV 815 (936)
Q Consensus 758 --------~~~~~~-~~~i~~~~~-----------~~~q~v~~SAT-~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~ 815 (936)
.+|... +..+...++ +..|++++||| .|..+. .+...++. +.+.... .....+
T Consensus 157 ~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~i 231 (414)
T 3oiy_A 157 NIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLV-SVARNI 231 (414)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCC-CCCCSE
T ss_pred hhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccc-cccccc
Confidence 778888 778887766 88999999999 565544 23333322 1111111 223345
Q ss_pred EEEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceE-EEeCCCCHHHHHHHHHHhhcCCCc
Q psy7557 816 TQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSC-SLYGDLSQEDREIALEDITSGYAR 894 (936)
Q Consensus 816 ~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~-~~h~~l~~~~R~~~~~~F~~g~~~ 894 (936)
.+.+..+ .+...+..++... ++++||||+++..|+.++..|...++.+. .+||+ +|. ++.|++|+++
T Consensus 232 ~~~~~~~---~~~~~l~~~l~~~---~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~ 299 (414)
T 3oiy_A 232 THVRISS---RSKEKLVELLEIF---RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKIN 299 (414)
T ss_dssp EEEEESS---CCHHHHHHHHHHH---CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCS
T ss_pred hheeecc---CHHHHHHHHHHHc---CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCe
Confidence 5554443 4566677777763 37899999999999999999999999998 89985 444 9999999999
Q ss_pred EEEe----cccCccCCCCCC-CCEEEEccCC--CChhhhHhhhhhccCC
Q psy7557 895 ICVA----TDVASRGLDVPD-LTHVINYDFP--SHIEEYVHRVGRTGEF 936 (936)
Q Consensus 895 vLVa----T~~~~~Gidip~-v~~VI~~d~p--~s~~~yiqr~GRaGR~ 936 (936)
|||| |+++++|+|+|+ +++||+||+| .+..+|+||+|||||+
T Consensus 300 vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~ 348 (414)
T 3oiy_A 300 ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRI 348 (414)
T ss_dssp EEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCE
T ss_pred EEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccC
Confidence 9999 999999999999 9999999999 9999999999999994
No 43
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=4e-44 Score=444.82 Aligned_cols=326 Identities=21% Similarity=0.273 Sum_probs=265.8
Q ss_pred HHHHH-hCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHH
Q psy7557 88 LRQLE-NLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQI 166 (936)
Q Consensus 88 ~~~l~-~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~ 166 (936)
.+.+. ..|| +|||+|.+|+|.+++|+|++++||||||||++|++|++..+ ..++++||++||++||.|+
T Consensus 68 ~~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~---------~~~~~~Lil~PtreLa~Q~ 137 (1104)
T 4ddu_A 68 RSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA---------RKGKKSALVFPTVTLVKQT 137 (1104)
T ss_dssp HHHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH---------TTTCCEEEEESSHHHHHHH
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH---------hcCCeEEEEechHHHHHHH
Confidence 33443 3788 79999999999999999999999999999998888877655 3477999999999999999
Q ss_pred HHHHHhccCCCCEEEEEeCCccc---hHHHHHhhcC-CcEEEeCCchhHHHHHcCCcCCCCceEEEEccchh--------
Q psy7557 167 EREVNKIDYKGLKAVCVYGGKEI---EPQLEKIREG-CHILIATPGRLNDFVSRASIDLKAVSFVVLDEADR-------- 234 (936)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~gg~~~---~~~~~~~~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~-------- 234 (936)
++.++++...++++..++||.+. ..+...+..+ ++|+|+||++|.+++.. +.++++++|||||||+
T Consensus 138 ~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~ 215 (1104)
T 4ddu_A 138 LERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNI 215 (1104)
T ss_dssp HHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHH
T ss_pred HHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccc
Confidence 99999987778999999999887 6677788777 99999999999888764 6678999999999965
Q ss_pred --hhc-CCCHHH-HHHHHhhcC-----------CCCcEEEEEec-cchHHHH-HHHHhcCCCEEEEeCCCCcccCCceEE
Q psy7557 235 --MLD-LGFEPQ-INKTSIYIN-----------PNRQTVMTSAT-WNKDVQR-VAKKYMVNPVKVNVGSLDLAATHTVTQ 297 (936)
Q Consensus 235 --l~~-~~~~~~-~~~i~~~~~-----------~~~q~~~~SAT-~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~ 297 (936)
|++ +||... +..++..++ ++.|+++|||| .|..+.. +...++. +.+.... .....+.+
T Consensus 216 Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~-~~~~~i~~ 290 (1104)
T 4ddu_A 216 DTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLV-SVARNITH 290 (1104)
T ss_dssp HHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCC-CCCCCEEE
T ss_pred hhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCC-CCcCCcee
Confidence 445 898888 888888777 88999999999 5655442 3333332 2222221 23445666
Q ss_pred EEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCcee-eecCCCCHHHHHHHHHHhhcCCcEEE
Q psy7557 298 KIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSC-SLYGDLSQEDREIALEDITSGYARIC 376 (936)
Q Consensus 298 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~-~~h~~~~~~~R~~~~~~f~~g~~~vL 376 (936)
.+..+ ++...+.+++... ++++||||+++..++.++..|...++.+. .+||+ |.+ ++.|++|+++||
T Consensus 291 ~~~~~---~k~~~L~~ll~~~---~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VL 358 (1104)
T 4ddu_A 291 VRISS---RSKEKLVELLEIF---RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINIL 358 (1104)
T ss_dssp EEESC---CCHHHHHHHHHHH---CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEE
T ss_pred EEEec---CHHHHHHHHHHhc---CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEE
Confidence 66554 4566677777764 48999999999999999999999999998 99992 555 999999999999
Q ss_pred EE----ecccccCCCCCC-CcEEEEecCCC--------------------------------------------------
Q psy7557 377 VA----TDVASRGLDVPD-LTHVINYDFPS-------------------------------------------------- 401 (936)
Q Consensus 377 va----T~~~~~GiDip~-v~~VI~~d~p~-------------------------------------------------- 401 (936)
|| |++++||||+|+ |++|||||+|.
T Consensus 359 Vatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~ 438 (1104)
T 4ddu_A 359 IGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFV 438 (1104)
T ss_dssp EEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHH
T ss_pred EEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 99 999999999999 99999999998
Q ss_pred ----------------------CccccccCCCCcccCCCce--eEEEEecccChhhHHhHHHHHh
Q psy7557 402 ----------------------HIEEYVHRVGRTGRAGKSG--ESITLMTRKDWSHAHEIIPILE 442 (936)
Q Consensus 402 ----------------------s~~~y~qr~GRagR~g~~g--~~~~~~~~~~~~~~~~l~~~l~ 442 (936)
++.+|+||+|||||.|..| .+++++..+|...+..|.+.++
T Consensus 439 ~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 439 EKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp HHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred HHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHh
Confidence 7789999999999965433 4455555577777777777665
No 44
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=4.4e-45 Score=422.56 Aligned_cols=378 Identities=19% Similarity=0.221 Sum_probs=263.9
Q ss_pred hcccCCccccccCcCCccccCCCHHHHHHHHhhCCCceEEeecCCCccCCCCCCCCCCcccChHHhhcCCHHHHHH----
Q psy7557 15 KWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQ---- 90 (936)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~f~~~~~~~~~l~~~---- 90 (936)
..+++.++.+.+..-.+++..+++++......++..- ...| .++++. .|+.+..
T Consensus 9 ~lk~~~~~v~~in~le~~~~~lsd~eL~~kt~~fk~r-----l~~g--------------~~ld~~---lpeafA~vrea 66 (853)
T 2fsf_A 9 TLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRAR-----LEKG--------------EVLENL---IPEAFAVVREA 66 (853)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHSCHHHHHHHHHHHHHH-----HHTT--------------CCHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHH-----HHcC--------------CChhhh---hHHHHHHHHHH
Confidence 3445556666777777889999999887655433210 0011 123332 2333322
Q ss_pred -HHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHH
Q psy7557 91 -LENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIERE 169 (936)
Q Consensus 91 -l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~ 169 (936)
...+|. .|+|+|..++|.+++|+ ++.++||||||++|++|++.... .++.++||+||++||.|+++.
T Consensus 67 ~~R~lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l---------~g~~vlVltPTreLA~Q~~e~ 134 (853)
T 2fsf_A 67 SKRVFGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL---------TGKGVHVVTVNDYLAQRDAEN 134 (853)
T ss_dssp HHHHHSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT---------TSSCCEEEESSHHHHHHHHHH
T ss_pred HHHHcCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH---------cCCcEEEEcCCHHHHHHHHHH
Confidence 233675 89999999999999998 99999999999999999986542 356899999999999999999
Q ss_pred HHhc-cCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchh-HHHHHcCC------cCCCCceEEEEccchhhh-cCC-
Q psy7557 170 VNKI-DYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRL-NDFVSRAS------IDLKAVSFVVLDEADRML-DLG- 239 (936)
Q Consensus 170 ~~~~-~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~------~~~~~~~~lViDEah~l~-~~~- 239 (936)
+..+ ...++++.+++||.+.. ...+..+++|+||||++| .|++..+. ..++++.++|+||||+|+ +.+
T Consensus 135 ~~~l~~~lgl~v~~i~GG~~~~--~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~ 212 (853)
T 2fsf_A 135 NRPLFEFLGLTVGINLPGMPAP--AKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEAR 212 (853)
T ss_dssp HHHHHHHTTCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTT
T ss_pred HHHHHHhcCCeEEEEeCCCCHH--HHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCc
Confidence 9996 46799999999998753 344555799999999999 78887552 567899999999999998 543
Q ss_pred --------------CHHHHHHHHhhcCC--------------------CCcEE------------------------EEE
Q psy7557 240 --------------FEPQINKTSIYINP--------------------NRQTV------------------------MTS 261 (936)
Q Consensus 240 --------------~~~~~~~i~~~~~~--------------------~~q~~------------------------~~S 261 (936)
|...+..+...+++ .+|++ ++|
T Consensus 213 tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfs 292 (853)
T 2fsf_A 213 TPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYS 292 (853)
T ss_dssp CEEEEEEC------------------------------------------------------------------------
T ss_pred ccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccC
Confidence 56777888777764 45654 899
Q ss_pred eccchHHHHH-----HHHhcC--------CC-----------------------------EEEEeCCCCcccCCceE---
Q psy7557 262 ATWNKDVQRV-----AKKYMV--------NP-----------------------------VKVNVGSLDLAATHTVT--- 296 (936)
Q Consensus 262 AT~~~~~~~~-----~~~~~~--------~~-----------------------------~~i~~~~~~~~~~~~~~--- 296 (936)
||.+.....+ +..++. ++ ..+.+..... ....+.
T Consensus 293 at~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~-tla~It~qn 371 (853)
T 2fsf_A 293 PANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQ-TLASITFQN 371 (853)
T ss_dssp ----------------------------------------------------------------CCCCCE-EEEEEEHHH
T ss_pred cccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceeccccc-ccceeehHH
Confidence 9976422111 111111 00 1111111100 000111
Q ss_pred --------------------------------------------EEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCch
Q psy7557 297 --------------------------------------------QKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRK 332 (936)
Q Consensus 297 --------------------------------------------~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~ 332 (936)
+.++.+...+|...+.+.+......+.++||||+|+
T Consensus 372 yfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~si 451 (853)
T 2fsf_A 372 YFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISI 451 (853)
T ss_dssp HHTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSH
T ss_pred HHhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcH
Confidence 123556778899899888876545678999999999
Q ss_pred HHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCC---------------------
Q psy7557 333 ASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDL--------------------- 391 (936)
Q Consensus 333 ~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v--------------------- 391 (936)
..++.++..|...|+++..+||++.+.+|..+.+.|+.| .|+||||+++||+||+..
T Consensus 452 e~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~ 529 (853)
T 2fsf_A 452 EKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKI 529 (853)
T ss_dssp HHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHH
Confidence 999999999999999999999999999999899999998 599999999999999974
Q ss_pred ----------------cEEEEecCCCCccccccCCCCcccCCCceeEEEEecccCh
Q psy7557 392 ----------------THVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDW 431 (936)
Q Consensus 392 ----------------~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~ 431 (936)
.+||+|+.|.|...|+||+|||||.|.+|.+++|++..|.
T Consensus 530 ~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 530 KADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred HHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 6999999999999999999999999999999999998773
No 45
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=4.4e-44 Score=435.32 Aligned_cols=343 Identities=20% Similarity=0.222 Sum_probs=226.1
Q ss_pred HHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHH
Q psy7557 89 RQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIER 168 (936)
Q Consensus 89 ~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~ 168 (936)
..+..+||.+|+|+|.++++.+++|+|+++++|||+|||++|++|++..+.... ...++++||++||++|+.|+.+
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~----~~~~~~~lvl~Pt~~L~~Q~~~ 79 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP----QGQKGKVVFFANQIPVYEQNKS 79 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC----TTCCCCEEEECSSHHHHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc----cCCCCeEEEEECCHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999998775432 1234689999999999999999
Q ss_pred HHHhcc-CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCc-CCCCceEEEEccchhhhcCCCH-HHHH
Q psy7557 169 EVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASI-DLKAVSFVVLDEADRMLDLGFE-PQIN 245 (936)
Q Consensus 169 ~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~-~~~~~~~lViDEah~l~~~~~~-~~~~ 245 (936)
.++++. ..++++..++||.....+...+..+++|+|+||++|.+.+..+.+ .+.++++|||||||++.+.... ..+.
T Consensus 80 ~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~ 159 (696)
T 2ykg_A 80 VFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMF 159 (696)
T ss_dssp HHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHH
T ss_pred HHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHH
Confidence 999964 458999999999877767777777899999999999999988776 7899999999999998766522 2222
Q ss_pred HHHhh-----cCCCCcEEEEEeccc-------hH-HHHHH---------------------HHhcCCCEEEEeCCCCccc
Q psy7557 246 KTSIY-----INPNRQTVMTSATWN-------KD-VQRVA---------------------KKYMVNPVKVNVGSLDLAA 291 (936)
Q Consensus 246 ~i~~~-----~~~~~q~~~~SAT~~-------~~-~~~~~---------------------~~~~~~~~~i~~~~~~~~~ 291 (936)
..+.. .++..+++++|||+. .. ...+. ..+...|............
T Consensus 160 ~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~ 239 (696)
T 2ykg_A 160 NYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRIS 239 (696)
T ss_dssp HHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSC
T ss_pred HHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccC
Confidence 22221 246789999999986 11 11111 1111222211100000000
Q ss_pred --------------------------------------------------------------------------------
Q psy7557 292 -------------------------------------------------------------------------------- 291 (936)
Q Consensus 292 -------------------------------------------------------------------------------- 291 (936)
T Consensus 240 ~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 319 (696)
T 2ykg_A 240 DKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKY 319 (696)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ------------------------------CCceEEEEEE-------------e---CchhhHHHHHHHHHhc--cCCCC
Q psy7557 292 ------------------------------THTVTQKIII-------------L---DEDEKKDWLMEFFDNM--DEERD 323 (936)
Q Consensus 292 ------------------------------~~~~~~~~~~-------------~---~~~~k~~~l~~~l~~~--~~~~~ 323 (936)
...+.+.+.. . ....|...|.+++... ...++
T Consensus 320 ~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~ 399 (696)
T 2ykg_A 320 NDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET 399 (696)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTC
T ss_pred hHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCC
Confidence 0000000000 0 1234666666766654 13567
Q ss_pred cEEEEeCchHHHHHHHHHhhhcC----Cceeee--------cCCCCHHHHHHHHHHhhc-CCcEEEEEecccccCCCCCC
Q psy7557 324 KVMVFMGRKASVSAMSSDLACQY----RKSCSL--------YGDLSQEDREIALEDITS-GYARICVATDVASRGLDVPD 390 (936)
Q Consensus 324 ~~iVF~~~~~~~~~l~~~L~~~~----~~~~~~--------h~~~~~~~R~~~~~~f~~-g~~~vLvaT~~~~~GiDip~ 390 (936)
++||||+++..++.+++.|...+ +++..+ ||+|++.+|..+++.|++ |+.+|||||+++++|||+|+
T Consensus 400 ~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~ 479 (696)
T 2ykg_A 400 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQ 479 (696)
T ss_dssp CEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CC
T ss_pred cEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCcc
Confidence 99999999999999999999887 788877 569999999999999998 99999999999999999999
Q ss_pred CcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhH
Q psy7557 391 LTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEI 437 (936)
Q Consensus 391 v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l 437 (936)
+++||+||+|.|..+|+||+|| ||. +.|.++++++..+......+
T Consensus 480 v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 480 CNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp CSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 9999999999999999999999 998 78999999998876554433
No 46
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=1e-43 Score=421.31 Aligned_cols=333 Identities=17% Similarity=0.195 Sum_probs=204.8
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhcc
Q psy7557 95 SFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID 174 (936)
Q Consensus 95 g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 174 (936)
+..+|+|+|.++++.+++|+|+++++|||||||++|++|++..+.... ...++++||++||++|+.|+++.++++.
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~----~~~~~~~lil~P~~~L~~q~~~~~~~~~ 79 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP----AGRKAKVVFLATKVPVYEQQKNVFKHHF 79 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC----SSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc----ccCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 345899999999999999999999999999999999999988775432 1236789999999999999999999964
Q ss_pred -CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCc-CCCCceEEEEccchhhhcCCCHHHHH-HHHhh-
Q psy7557 175 -YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASI-DLKAVSFVVLDEADRMLDLGFEPQIN-KTSIY- 250 (936)
Q Consensus 175 -~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~-~~~~~~~lViDEah~l~~~~~~~~~~-~i~~~- 250 (936)
..++++..++|+.....++..+..+++|+|+||++|.+.+..+.+ .+.++++||+||||++.+++....+. .....
T Consensus 80 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~ 159 (556)
T 4a2p_A 80 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 159 (556)
T ss_dssp GGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHH
T ss_pred cccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhh
Confidence 458999999999877777777777899999999999999988877 78999999999999999887544332 22211
Q ss_pred ---cCCCCcEEEEEeccch-----------HHHHHHHHh------------------cCCCEEEEeCCCCcccCCc----
Q psy7557 251 ---INPNRQTVMTSATWNK-----------DVQRVAKKY------------------MVNPVKVNVGSLDLAATHT---- 294 (936)
Q Consensus 251 ---~~~~~q~~~~SAT~~~-----------~~~~~~~~~------------------~~~~~~i~~~~~~~~~~~~---- 294 (936)
..+..|++++|||++. .+..+...+ ...|.......... ....
T Consensus 160 ~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 238 (556)
T 4a2p_A 160 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRR-IHNPFAAI 238 (556)
T ss_dssp HCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCC-SCCHHHHH
T ss_pred hcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCC-cCChHHHH
Confidence 1456899999999853 111222221 11121111100000 0000
Q ss_pred -----------------eEEEEE---------------------------------------------------------
Q psy7557 295 -----------------VTQKII--------------------------------------------------------- 300 (936)
Q Consensus 295 -----------------~~~~~~--------------------------------------------------------- 300 (936)
+.....
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (556)
T 4a2p_A 239 ISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 318 (556)
T ss_dssp HHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000000
Q ss_pred ------------------------------------------------EeCchhhHHHHHHHHHhcc--CCCCcEEEEeC
Q psy7557 301 ------------------------------------------------ILDEDEKKDWLMEFFDNMD--EERDKVMVFMG 330 (936)
Q Consensus 301 ------------------------------------------------~~~~~~k~~~l~~~l~~~~--~~~~~~iVF~~ 330 (936)
......|...|.+++.... ....++||||+
T Consensus 319 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~ 398 (556)
T 4a2p_A 319 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 398 (556)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEES
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEc
Confidence 0001335555555555432 45789999999
Q ss_pred chHHHHHHHHHhhhc------------CCceeeecCCCCHHHHHHHHHHhhc-CCcEEEEEecccccCCCCCCCcEEEEe
Q psy7557 331 RKASVSAMSSDLACQ------------YRKSCSLYGDLSQEDREIALEDITS-GYARICVATDVASRGLDVPDLTHVINY 397 (936)
Q Consensus 331 ~~~~~~~l~~~L~~~------------~~~~~~~h~~~~~~~R~~~~~~f~~-g~~~vLvaT~~~~~GiDip~v~~VI~~ 397 (936)
++..++.+++.|... |.....+||+|++.+|..+++.|++ |+++|||||+++++|||+|++++||+|
T Consensus 399 ~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~ 478 (556)
T 4a2p_A 399 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLY 478 (556)
T ss_dssp SHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEE
T ss_pred cHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEe
Confidence 999999999999875 4555667889999999999999999 999999999999999999999999999
Q ss_pred cCCCCccccccCCCCcccCCCceeEEEEecccChhhH
Q psy7557 398 DFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHA 434 (936)
Q Consensus 398 d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~ 434 (936)
|+|.|+.+|+||+|| ||. +.|.+++|+++.+....
T Consensus 479 d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~ 513 (556)
T 4a2p_A 479 EYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVEN 513 (556)
T ss_dssp TCCSCHHHHHHC----------CCEEEEESCHHHHHH
T ss_pred CCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchHHH
Confidence 999999999999999 999 78999999998765433
No 47
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-42 Score=427.40 Aligned_cols=313 Identities=22% Similarity=0.235 Sum_probs=254.6
Q ss_pred HHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q psy7557 91 LENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREV 170 (936)
Q Consensus 91 l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~ 170 (936)
....+| +|+|+|.+|++.+.+|++++++||||||||++|.+|++..+ ..+.++||++||++|+.|+++.+
T Consensus 80 ~~~~~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l---------~~g~rvL~l~PtkaLa~Q~~~~l 149 (1010)
T 2xgj_A 80 ARTYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSL---------KNKQRVIYTSPIKALSNQKYREL 149 (1010)
T ss_dssp SCCCSS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHH---------HTTCEEEEEESSHHHHHHHHHHH
T ss_pred HHhCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHh---------ccCCeEEEECChHHHHHHHHHHH
Confidence 345678 59999999999999999999999999999999999888765 24679999999999999999999
Q ss_pred HhccCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHHHhh
Q psy7557 171 NKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIY 250 (936)
Q Consensus 171 ~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~ 250 (936)
.++.. .+..++|+..... +++|+|+||++|.+++.++...++++++|||||||++.++++...+..++..
T Consensus 150 ~~~~~---~vglltGd~~~~~-------~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~ 219 (1010)
T 2xgj_A 150 LAEFG---DVGLMTGDITINP-------DAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIIL 219 (1010)
T ss_dssp HHHHS---CEEEECSSCEECT-------TCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHH
T ss_pred HHHhC---CEEEEeCCCccCC-------CCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHh
Confidence 98533 6777888876542 4799999999999999888888999999999999999999999999999999
Q ss_pred cCCCCcEEEEEeccchHHHHHHH---HhcCCCEEEEeCCCCcccCCceEEEEEEe---------Cc--------------
Q psy7557 251 INPNRQTVMTSATWNKDVQRVAK---KYMVNPVKVNVGSLDLAATHTVTQKIIIL---------DE-------------- 304 (936)
Q Consensus 251 ~~~~~q~~~~SAT~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---------~~-------------- 304 (936)
++++.|++++|||+|+. ..++. .....+..+...... +..+.+.+... +.
T Consensus 220 l~~~~~il~LSATi~n~-~e~a~~l~~~~~~~~~vi~~~~r---p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (1010)
T 2xgj_A 220 LPDKVRYVFLSATIPNA-MEFAEWICKIHSQPCHIVYTNFR---PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMA 295 (1010)
T ss_dssp SCTTCEEEEEECCCTTH-HHHHHHHHHHHTSCEEEEEECCC---SSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHH
T ss_pred cCCCCeEEEEcCCCCCH-HHHHHHHHhhcCCCeEEEecCCC---cccceEEEEecCCcceeeeeccccccchHHHHHHHH
Confidence 99999999999999854 33333 334556555443322 22333333221 10
Q ss_pred --------------------------------hhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCC-----
Q psy7557 305 --------------------------------DEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYR----- 347 (936)
Q Consensus 305 --------------------------------~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~----- 347 (936)
......+...+.. ....++||||+++..|+.++..|...++
T Consensus 296 ~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~--~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e 373 (1010)
T 2xgj_A 296 SISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK--KKYNPVIVFSFSKRDCEELALKMSKLDFNSDDE 373 (1010)
T ss_dssp TCC------------------------------CHHHHHHHHHHH--HTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHH
T ss_pred HHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHh--cCCCCEEEEECCHHHHHHHHHHHHhCCCCChHH
Confidence 1111223333332 2345899999999999999999876433
Q ss_pred ----------------------------------ceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcE
Q psy7557 348 ----------------------------------KSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTH 393 (936)
Q Consensus 348 ----------------------------------~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~ 393 (936)
++..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++
T Consensus 374 ~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~v 453 (1010)
T 2xgj_A 374 KEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTV 453 (1010)
T ss_dssp HHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEE
T ss_pred HHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceE
Confidence 2678999999999999999999999999999999999999999999
Q ss_pred EEE----ecC----CCCccccccCCCCcccCCC--ceeEEEEeccc
Q psy7557 394 VIN----YDF----PSHIEEYVHRVGRTGRAGK--SGESITLMTRK 429 (936)
Q Consensus 394 VI~----~d~----p~s~~~y~qr~GRagR~g~--~g~~~~~~~~~ 429 (936)
||+ ||. |.+..+|+||+|||||.|. .|.|++++++.
T Consensus 454 VI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 454 VFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp EESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred EEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 999 999 8899999999999999997 49999999865
No 48
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.5e-42 Score=421.31 Aligned_cols=322 Identities=20% Similarity=0.280 Sum_probs=255.3
Q ss_pred CChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHh-hhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEE
Q psy7557 595 TSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPI-LMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSV 673 (936)
Q Consensus 595 ~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~-~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~ 673 (936)
.+|++ +++++.+.+.++++||.+|+|+|.++++. +.+++|++++||||||||++|.+|++..+.. .+.++
T Consensus 8 ~~~~~-l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~i 78 (715)
T 2va8_A 8 MPIED-LKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK--------NGGKA 78 (715)
T ss_dssp CBGGG-SSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH--------SCSEE
T ss_pred CcHHH-cCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH--------CCCeE
Confidence 45776 68999999999999999999999999999 7789999999999999999999999977642 36799
Q ss_pred EEEecCHHHHHHHHHHHHhccCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccc
Q psy7557 674 LVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEAD 753 (936)
Q Consensus 674 lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah 753 (936)
+|++|+++||.|+.+.++.+...++++...+|+...... .+ .+++|+|+|||+|..++.+....++++++|||||||
T Consensus 79 l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H 155 (715)
T 2va8_A 79 IYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDA--WL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELH 155 (715)
T ss_dssp EEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCG--GG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGG
T ss_pred EEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchh--hc-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechh
Confidence 999999999999999998776668899999998765443 12 358999999999999998877778999999999999
Q ss_pred hhccCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCce--------EEEEEEcC--
Q psy7557 754 RMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTV--------TQKIIILD-- 823 (936)
Q Consensus 754 ~l~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--------~~~~~~~~-- 823 (936)
++.+.++...++.+...++ +.|++++|||++. ...++.++...+ +............+ ...+.+.+
T Consensus 156 ~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~~l~~~~--~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~ 231 (715)
T 2va8_A 156 YLNDPERGPVVESVTIRAK-RRNLLALSATISN-YKQIAKWLGAEP--VATNWRPVPLIEGVIYPERKKKEYNVIFKDNT 231 (715)
T ss_dssp GGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHHHHTCEE--EECCCCSSCEEEEEEEECSSTTEEEEEETTSC
T ss_pred hcCCcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHHHhCCCc--cCCCCCCCCceEEEEecCCcccceeeecCcch
Confidence 9988888888888877765 8899999999974 567777664321 11111110000000 00111111
Q ss_pred ------cchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcC-------------------------------
Q psy7557 824 ------EDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQY------------------------------- 866 (936)
Q Consensus 824 ------~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~------------------------------- 866 (936)
.......+.+.+ ...+++||||++++.++.++..|....
T Consensus 232 ~~~~~~~~~~~~~~~~~~----~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l 307 (715)
T 2va8_A 232 TKKVHGDDAIIAYTLDSL----SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELL 307 (715)
T ss_dssp EEEEESSSHHHHHHHHHH----TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHH
T ss_pred hhhcccchHHHHHHHHHH----hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHH
Confidence 123333333333 356899999999999999999998642
Q ss_pred -----CceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEE----cc-------CCCChhhhHhhh
Q psy7557 867 -----RKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVIN----YD-------FPSHIEEYVHRV 930 (936)
Q Consensus 867 -----~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~----~d-------~p~s~~~yiqr~ 930 (936)
.++..+||+|++++|..+++.|++|.++|||||+++++|||+|++++||+ || .|.|..+|+||+
T Consensus 308 ~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~ 387 (715)
T 2va8_A 308 KSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMS 387 (715)
T ss_dssp HHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHH
T ss_pred HHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHh
Confidence 25899999999999999999999999999999999999999999999999 99 899999999999
Q ss_pred hhccCC
Q psy7557 931 GRTGEF 936 (936)
Q Consensus 931 GRaGR~ 936 (936)
|||||.
T Consensus 388 GRaGR~ 393 (715)
T 2va8_A 388 GRAGRP 393 (715)
T ss_dssp TTBCCT
T ss_pred hhcCCC
Confidence 999994
No 49
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=3.8e-43 Score=426.29 Aligned_cols=317 Identities=17% Similarity=0.210 Sum_probs=259.3
Q ss_pred hHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHh-hhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEE
Q psy7557 597 FKQAFQHYPEILRQLENLSFTTPSPIQAQAWPI-LMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLV 675 (936)
Q Consensus 597 f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~-~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~li 675 (936)
|++ +++++.+.+.+++.||..|+|+|.++++. +.+|+|++++||||||||++|.+|++..+.. .+++++|
T Consensus 3 f~~-l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~~l~ 73 (720)
T 2zj8_A 3 VDE-LRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT--------QGGKAVY 73 (720)
T ss_dssp GGG-CCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH--------HCSEEEE
T ss_pred Hhh-cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh--------CCCEEEE
Confidence 555 68999999999999999999999999998 8899999999999999999999999977642 2579999
Q ss_pred EecCHHHHHHHHHHHHhccCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchh
Q psy7557 676 MAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRM 755 (936)
Q Consensus 676 l~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l 755 (936)
++|+++||.|+.+.++++...++++..++|+...... ...+++|+|+|||+|..++.+....++++++||+||||++
T Consensus 74 i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l 150 (720)
T 2zj8_A 74 IVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLI 150 (720)
T ss_dssp ECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGG
T ss_pred EcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCccc
Confidence 9999999999999998776668999999997665443 2235899999999999999887777899999999999999
Q ss_pred ccCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEE------EEEcC-----c
Q psy7557 756 LDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQK------IIILD-----E 824 (936)
Q Consensus 756 ~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------~~~~~-----~ 824 (936)
.++++...+..+...++.+.|++++|||++. ...+..++...+ +...... ..+... +.+.. .
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~~l~~~~--~~~~~rp----~~l~~~~~~~~~~~~~~~~~~~~ 223 (720)
T 2zj8_A 151 GSRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAEWLNAEL--IVSDWRP----VKLRRGVFYQGFVTWEDGSIDRF 223 (720)
T ss_dssp GCTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHHHTTEEE--EECCCCS----SEEEEEEEETTEEEETTSCEEEC
T ss_pred CCCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHHHhCCcc--cCCCCCC----CcceEEEEeCCeeeccccchhhh
Confidence 9888999999888888778999999999974 566776654221 1111111 011111 11211 2
Q ss_pred chhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcC---------------------------------CceEE
Q psy7557 825 DEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQY---------------------------------RKSCS 871 (936)
Q Consensus 825 ~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~---------------------------------~~~~~ 871 (936)
..+...+.+.+. ..+++||||++++.++.++..|.... .++..
T Consensus 224 ~~~~~~~~~~~~----~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~ 299 (720)
T 2zj8_A 224 SSWEELVYDAIR----KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAF 299 (720)
T ss_dssp SSTTHHHHHHHH----TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEE
T ss_pred hHHHHHHHHHHh----CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeee
Confidence 233344444333 45899999999999999999987531 25899
Q ss_pred EeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEE----cc----CCCChhhhHhhhhhccCC
Q psy7557 872 LYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVIN----YD----FPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 872 ~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~----~d----~p~s~~~yiqr~GRaGR~ 936 (936)
+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.
T Consensus 300 ~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~ 372 (720)
T 2zj8_A 300 HHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRP 372 (720)
T ss_dssp ECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCT
T ss_pred ecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCC
Confidence 999999999999999999999999999999999999999999998 77 589999999999999994
No 50
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=7.7e-43 Score=413.81 Aligned_cols=329 Identities=19% Similarity=0.201 Sum_probs=230.9
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhcc-CC
Q psy7557 98 TPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID-YK 176 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~-~~ 176 (936)
+|+|+|.++++.+++|+|+++++|||||||++|++|++..+.... ...++++||++||++|+.|+++.++++. ..
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~----~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP----CGQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC----SSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc----cCCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 799999999999999999999999999999999999988775432 1236789999999999999999999964 45
Q ss_pred CCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCc-CCCCceEEEEccchhhhcCCC-HHHHHHHHhhc---
Q psy7557 177 GLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASI-DLKAVSFVVLDEADRMLDLGF-EPQINKTSIYI--- 251 (936)
Q Consensus 177 ~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~-~~~~~~~lViDEah~l~~~~~-~~~~~~i~~~~--- 251 (936)
++++..++|+.....++..+..+++|+|+||++|.+.+..+.+ .+.++++||+||||++.+.+. ...+.......
T Consensus 80 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~ 159 (555)
T 3tbk_A 80 GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGE 159 (555)
T ss_dssp TCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSS
T ss_pred CcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhcc
Confidence 8999999999887777777777899999999999999988777 789999999999999988763 23232333221
Q ss_pred --CCCCcEEEEEeccchH-----------HHHHHHHhcCCCEEEEeCCCC-----cccCCceEEEEEEeC----------
Q psy7557 252 --NPNRQTVMTSATWNKD-----------VQRVAKKYMVNPVKVNVGSLD-----LAATHTVTQKIIILD---------- 303 (936)
Q Consensus 252 --~~~~q~~~~SAT~~~~-----------~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~~---------- 303 (936)
.+..|++++|||++.. +..+...+ ..+ .+...... ........ ....+.
T Consensus 160 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l-~~~-~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~ 236 (555)
T 3tbk_A 160 SRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAAL-DAS-VIATVRDNVAELEQVVYKPQK-ISRKVASRTSNTFKCI 236 (555)
T ss_dssp CCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHT-TCS-EEECCCSCHHHHHTTCCCCCE-EEEECCCCSCCHHHHH
T ss_pred ccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhc-CCe-eeeccccCHHHHHhhcCCCce-EEEEecCcccChHHHH
Confidence 2567999999999542 11122221 111 11111000 00000000 000000
Q ss_pred --------------------------------------------------------------------------------
Q psy7557 304 -------------------------------------------------------------------------------- 303 (936)
Q Consensus 304 -------------------------------------------------------------------------------- 303 (936)
T Consensus 237 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 316 (555)
T 3tbk_A 237 ISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALII 316 (555)
T ss_dssp HHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence
Q ss_pred ----------------------------------------------------chhhHHHHHHHHHhcc--CCCCcEEEEe
Q psy7557 304 ----------------------------------------------------EDEKKDWLMEFFDNMD--EERDKVMVFM 329 (936)
Q Consensus 304 ----------------------------------------------------~~~k~~~l~~~l~~~~--~~~~~~iVF~ 329 (936)
...|...+.+++.... ....++||||
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~ 396 (555)
T 3tbk_A 317 SEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFV 396 (555)
T ss_dssp HHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred hhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEe
Confidence 1234555555555431 3468999999
Q ss_pred CchHHHHHHHHHhhhcC------------CceeeecCCCCHHHHHHHHHHhhc-CCcEEEEEecccccCCCCCCCcEEEE
Q psy7557 330 GRKASVSAMSSDLACQY------------RKSCSLYGDLSQEDREIALEDITS-GYARICVATDVASRGLDVPDLTHVIN 396 (936)
Q Consensus 330 ~~~~~~~~l~~~L~~~~------------~~~~~~h~~~~~~~R~~~~~~f~~-g~~~vLvaT~~~~~GiDip~v~~VI~ 396 (936)
+++..++.++..|...+ .....+||+|++.+|..+++.|++ |+++|||||+++++|||+|++++||+
T Consensus 397 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~ 476 (555)
T 3tbk_A 397 KTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVIL 476 (555)
T ss_dssp SSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEE
T ss_pred CcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEE
Confidence 99999999999998764 344556779999999999999999 99999999999999999999999999
Q ss_pred ecCCCCccccccCCCCcccCCCceeEEEEecccChhhHH
Q psy7557 397 YDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAH 435 (936)
Q Consensus 397 ~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~ 435 (936)
||+|.|+.+|+||+|| ||. +.|.+++|+++.+.....
T Consensus 477 ~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~ 513 (555)
T 3tbk_A 477 YEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKE 513 (555)
T ss_dssp ESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHH
T ss_pred eCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHH
Confidence 9999999999999999 999 899999999988765543
No 51
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-43 Score=440.68 Aligned_cols=310 Identities=18% Similarity=0.144 Sum_probs=243.0
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHH
Q psy7557 603 HYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTREL 682 (936)
Q Consensus 603 l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~L 682 (936)
+++.+...+...++..|+|+|.+|++.+++|+|++++||||||||++|++|++..+ ..++++||++||++|
T Consensus 169 l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l---------~~g~rvlvl~PtraL 239 (1108)
T 3l9o_A 169 IAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSL---------KNKQRVIYTSPIKAL 239 (1108)
T ss_dssp TTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHH---------HTTCEEEEEESSHHH
T ss_pred CChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHH---------hcCCeEEEEcCcHHH
Confidence 33444444455566689999999999999999999999999999999999999776 346799999999999
Q ss_pred HHHHHHHHHhccCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHH
Q psy7557 683 ATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEP 762 (936)
Q Consensus 683 a~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~ 762 (936)
+.|+++.+.++.. .+..++|+.... .+++|+|+||++|.+++.++...++++++|||||||++.++++..
T Consensus 240 a~Q~~~~l~~~~~---~VglltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~ 309 (1108)
T 3l9o_A 240 SNQKYRELLAEFG---DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGV 309 (1108)
T ss_dssp HHHHHHHHHHHTS---SEEEECSSCBCC-------CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHH
T ss_pred HHHHHHHHHHHhC---CccEEeCccccC-------CCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHH
Confidence 9999999998643 577788877643 348999999999999999887778999999999999999999999
Q ss_pred HHHHHhhhcCCCceEEEEEecCChH--HHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcC---------c-------
Q psy7557 763 QINKTSIYINPNRQTVMTSATWNKD--VQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD---------E------- 824 (936)
Q Consensus 763 ~~~~i~~~~~~~~q~v~~SAT~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---------~------- 824 (936)
.+..+...+++.+|+++||||+|.. +..+.......|..+....... ..+.+.+.... .
T Consensus 310 ~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp---~pl~~~~~~~~~~~~~~~vd~~~~~~~~ 386 (1108)
T 3l9o_A 310 VWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP---TPLQHYLFPAHGDGIYLVVDEKSTFREE 386 (1108)
T ss_dssp HHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCS---SCEEEEEEETTSSCCEEEEETTTEECHH
T ss_pred HHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc---ccceEEEeecCCcceeeeeccccchhhh
Confidence 9999999999999999999999764 3345555555665554432211 11222211100 0
Q ss_pred ---------------------------------------chhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhc
Q psy7557 825 ---------------------------------------DEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQ 865 (936)
Q Consensus 825 ---------------------------------------~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~ 865 (936)
..+...++..+.. ....++||||+++..|+.++..|...
T Consensus 387 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~--~~~~~vIVF~~sr~~~e~la~~L~~~ 464 (1108)
T 3l9o_A 387 NFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK--KKYNPVIVFSFSKRDCEELALKMSKL 464 (1108)
T ss_dssp HHHHHHTTC-----------------------------CHHHHHHHHHHHHH--TTCCCEEEEESCHHHHHHHHHHTCSH
T ss_pred hHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHh--cCCCCEEEEeCcHHHHHHHHHHHHhc
Confidence 1111222222222 24568999999999999999988643
Q ss_pred CC---------------------------------------ceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCC
Q psy7557 866 YR---------------------------------------KSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGL 906 (936)
Q Consensus 866 ~~---------------------------------------~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gi 906 (936)
++ +++.+||+|++.+|..+++.|++|.++|||||+++++||
T Consensus 465 ~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GI 544 (1108)
T 3l9o_A 465 DFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGL 544 (1108)
T ss_dssp HHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCC
T ss_pred cCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCC
Confidence 22 278999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEccCC--------CChhhhHhhhhhccCC
Q psy7557 907 DVPDLTHVINYDFP--------SHIEEYVHRVGRTGEF 936 (936)
Q Consensus 907 dip~v~~VI~~d~p--------~s~~~yiqr~GRaGR~ 936 (936)
|+|++++||+++.| .|..+|+||+|||||.
T Consensus 545 DiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~ 582 (1108)
T 3l9o_A 545 NMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRR 582 (1108)
T ss_dssp CC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCS
T ss_pred CCCCceEEEecCcccCccccccCCHHHHHHhhcccCCC
Confidence 99999999987764 4677899999999995
No 52
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=2.7e-43 Score=426.34 Aligned_cols=317 Identities=19% Similarity=0.234 Sum_probs=253.6
Q ss_pred ChHHhhc--CCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEE
Q psy7557 596 SFKQAFQ--HYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSV 673 (936)
Q Consensus 596 ~f~~~~~--l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~ 673 (936)
+|++ ++ +++.+.+.++++||.+|+|+|.++++.+++|+|++++||||||||++|.+|++..+. .++++
T Consensus 2 ~f~~-l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~---------~~~~~ 71 (702)
T 2p6r_A 2 KVEE-LAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI---------KGGKS 71 (702)
T ss_dssp CSHH-HHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHH---------TTCCE
T ss_pred chhh-hhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHH---------hCCcE
Confidence 3555 45 788899999999999999999999999999999999999999999999999997763 25689
Q ss_pred EEEecCHHHHHHHHHHHHhccCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccc
Q psy7557 674 LVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEAD 753 (936)
Q Consensus 674 lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah 753 (936)
+|++|+++||.|+.+.++.+...++++..++|+...... ...+++|+|+|||+|..++.+....++++++||+||||
T Consensus 72 l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H 148 (702)
T 2p6r_A 72 LYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIH 148 (702)
T ss_dssp EEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGG
T ss_pred EEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeee
Confidence 999999999999999998777678999999998765432 12368999999999999998877678999999999999
Q ss_pred hhccCCCHHHHHHHhhhc---CCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEE------EEcCc
Q psy7557 754 RMLDLGFEPQINKTSIYI---NPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKI------IILDE 824 (936)
Q Consensus 754 ~l~~~~~~~~~~~i~~~~---~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------~~~~~ 824 (936)
++.++++...+..+...+ +++.|++++|||++. ...++.++..+. +....... .+...+ .+...
T Consensus 149 ~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~l~~~~--~~~~~r~~----~l~~~~~~~~~~~~~~~ 221 (702)
T 2p6r_A 149 LLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEWLDADY--YVSDWRPV----PLVEGVLCEGTLELFDG 221 (702)
T ss_dssp GGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHHTTCEE--EECCCCSS----CEEEEEECSSEEEEEET
T ss_pred ecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHHhCCCc--ccCCCCCc----cceEEEeeCCeeeccCc
Confidence 999888888877776555 578999999999974 677777664221 21111111 111111 11111
Q ss_pred c-------hhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhc------------------------------CC
Q psy7557 825 D-------EKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQ------------------------------YR 867 (936)
Q Consensus 825 ~-------~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~------------------------------~~ 867 (936)
. .....+.+.+ ...+++||||++++.++.++..|... ..
T Consensus 222 ~~~~~~~~~~~~~~~~~~----~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 297 (702)
T 2p6r_A 222 AFSTSRRVKFEELVEECV----AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRK 297 (702)
T ss_dssp TEEEEEECCHHHHHHHHH----HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHT
T ss_pred chhhhhhhhHHHHHHHHH----hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhc
Confidence 1 1334444443 34689999999999999999988753 24
Q ss_pred ceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEE----cc---CCCChhhhHhhhhhccCC
Q psy7557 868 KSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVIN----YD---FPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 868 ~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~----~d---~p~s~~~yiqr~GRaGR~ 936 (936)
++..+||+|++++|..+++.|++|+++|||||+++++|||+|++++||+ || .|.|..+|+||+|||||.
T Consensus 298 ~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~ 373 (702)
T 2p6r_A 298 GAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRP 373 (702)
T ss_dssp TCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCT
T ss_pred CeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCC
Confidence 6889999999999999999999999999999999999999999999999 66 789999999999999994
No 53
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=2.5e-42 Score=422.97 Aligned_cols=334 Identities=17% Similarity=0.210 Sum_probs=211.7
Q ss_pred hCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHh
Q psy7557 93 NLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK 172 (936)
Q Consensus 93 ~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 172 (936)
-.|+.+|+|+|.++++.+++|+|+++++|||||||++|++|++..+.... ...++++||++||++|+.|+.+.+++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~----~~~~~~~Lvl~Pt~~L~~Q~~~~~~~ 318 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP----AGRKAKVVFLATKVPVYEQQKNVFKH 318 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC----SSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc----ccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999988775431 12367899999999999999999999
Q ss_pred cc-CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCc-CCCCceEEEEccchhhhcCCCHHHH-HHHHh
Q psy7557 173 ID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASI-DLKAVSFVVLDEADRMLDLGFEPQI-NKTSI 249 (936)
Q Consensus 173 ~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~-~~~~~~~lViDEah~l~~~~~~~~~-~~i~~ 249 (936)
+. ..++++..++||.....+...+..+++|+|+||++|.+.+..+.+ .+.++++|||||||++.+.+....+ .....
T Consensus 319 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~ 398 (797)
T 4a2q_A 319 HFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (797)
T ss_dssp HHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHH
T ss_pred hcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHH
Confidence 64 458999999999887777777778899999999999999988777 7899999999999999876543332 22222
Q ss_pred h----cCCCCcEEEEEeccch-----------HHHHHHHH------------------hcCCCEEEEeCCCCcccCCc--
Q psy7557 250 Y----INPNRQTVMTSATWNK-----------DVQRVAKK------------------YMVNPVKVNVGSLDLAATHT-- 294 (936)
Q Consensus 250 ~----~~~~~q~~~~SAT~~~-----------~~~~~~~~------------------~~~~~~~i~~~~~~~~~~~~-- 294 (936)
. ..+..|++++|||++. .+..+... +...|.......... ....
T Consensus 399 ~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~ 477 (797)
T 4a2q_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRR-IHNPFA 477 (797)
T ss_dssp HHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCC-SCCHHH
T ss_pred HhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCC-CCcHHH
Confidence 2 1566899999999852 22222221 112221111000000 0000
Q ss_pred ----------------------e--EEEEEE--------e----------------------------------------
Q psy7557 295 ----------------------V--TQKIII--------L---------------------------------------- 302 (936)
Q Consensus 295 ----------------------~--~~~~~~--------~---------------------------------------- 302 (936)
+ .+.... +
T Consensus 478 ~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 557 (797)
T 4a2q_A 478 AIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALI 557 (797)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 0 000000 0
Q ss_pred ----------------------------------------------------CchhhHHHHHHHHHhc--cCCCCcEEEE
Q psy7557 303 ----------------------------------------------------DEDEKKDWLMEFFDNM--DEERDKVMVF 328 (936)
Q Consensus 303 ----------------------------------------------------~~~~k~~~l~~~l~~~--~~~~~~~iVF 328 (936)
....|...|.+++... ...+.++|||
T Consensus 558 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF 637 (797)
T 4a2q_A 558 ISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLF 637 (797)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEE
T ss_pred hhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEE
Confidence 0123445555555542 1456899999
Q ss_pred eCchHHHHHHHHHhhhc------------CCceeeecCCCCHHHHHHHHHHhhc-CCcEEEEEecccccCCCCCCCcEEE
Q psy7557 329 MGRKASVSAMSSDLACQ------------YRKSCSLYGDLSQEDREIALEDITS-GYARICVATDVASRGLDVPDLTHVI 395 (936)
Q Consensus 329 ~~~~~~~~~l~~~L~~~------------~~~~~~~h~~~~~~~R~~~~~~f~~-g~~~vLvaT~~~~~GiDip~v~~VI 395 (936)
|+++..++.++..|... |.....+||+|++.+|..+++.|++ |.++|||||+++++|||+|++++||
T Consensus 638 ~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI 717 (797)
T 4a2q_A 638 AKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVV 717 (797)
T ss_dssp ESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEE
T ss_pred ECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEE
Confidence 99999999999999763 4566678999999999999999999 9999999999999999999999999
Q ss_pred EecCCCCccccccCCCCcccCCCceeEEEEecccChhh
Q psy7557 396 NYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSH 433 (936)
Q Consensus 396 ~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~ 433 (936)
+||+|.|+..|+||+|| ||. +.|.+++|+++.+...
T Consensus 718 ~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ee 753 (797)
T 4a2q_A 718 LYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 753 (797)
T ss_dssp EESCCSCHHHHHTC---------CCCEEEEECCHHHHH
T ss_pred EeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHHH
Confidence 99999999999999999 999 8999999999876543
No 54
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.4e-43 Score=440.78 Aligned_cols=325 Identities=17% Similarity=0.233 Sum_probs=259.6
Q ss_pred HHHHHH-hCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHH
Q psy7557 87 ILRQLE-NLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQ 165 (936)
Q Consensus 87 l~~~l~-~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q 165 (936)
+.+.+. .+||. | |+|.++||.+++|+|++++||||||||+ |.+|++..+.. .++++|||+||++||.|
T Consensus 46 ~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~--------~~~~~lil~PtreLa~Q 114 (1054)
T 1gku_B 46 FVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL--------KGKRCYVIFPTSLLVIQ 114 (1054)
T ss_dssp HHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT--------TSCCEEEEESCHHHHHH
T ss_pred HHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh--------cCCeEEEEeccHHHHHH
Confidence 334444 48998 9 9999999999999999999999999998 89998877642 46799999999999999
Q ss_pred HHHHHHhcc-CCCC----EEEEEeCCccchHH---HHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhc
Q psy7557 166 IEREVNKID-YKGL----KAVCVYGGKEIEPQ---LEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLD 237 (936)
Q Consensus 166 ~~~~~~~~~-~~~~----~~~~~~gg~~~~~~---~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~ 237 (936)
+++.++++. ..++ ++..++||.....+ ...+.. ++|+|+||++|.+++.+ ++++++|||||||+|++
T Consensus 115 ~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~ 189 (1054)
T 1gku_B 115 AAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK 189 (1054)
T ss_dssp HHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT
T ss_pred HHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh
Confidence 999999974 4577 89999999887663 444555 99999999999987765 67999999999999998
Q ss_pred CCCHHHHHHHHhhc-----------CCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchh
Q psy7557 238 LGFEPQINKTSIYI-----------NPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDE 306 (936)
Q Consensus 238 ~~~~~~~~~i~~~~-----------~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 306 (936)
+ ...+..+...+ +...|++++|||++.. ..+...++.++..+.+.... .....+.+.+. ...
T Consensus 190 ~--~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~-~~~~~i~~~~~---~~~ 262 (1054)
T 1gku_B 190 A--SKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSR-ITVRNVEDVAV---NDE 262 (1054)
T ss_dssp S--THHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCE-ECCCCEEEEEE---SCC
T ss_pred c--cccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcc-cCcCCceEEEe---chh
Confidence 4 46666666554 3568999999999987 54444444333333333222 22334555544 355
Q ss_pred hHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEE----eccc
Q psy7557 307 KKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVA----TDVA 382 (936)
Q Consensus 307 k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLva----T~~~ 382 (936)
+...+.+++... ++++||||+++..|+.+++.|... +++..+||+| ..+++.|++|+.+|||| |+++
T Consensus 263 k~~~L~~ll~~~---~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~ 333 (1054)
T 1gku_B 263 SISTLSSILEKL---GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTL 333 (1054)
T ss_dssp CTTTTHHHHTTS---CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC-----
T ss_pred HHHHHHHHHhhc---CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCee
Confidence 666677777654 578999999999999999999988 8999999998 37889999999999999 8999
Q ss_pred ccCCCCCCC-cEEEEecCC-------------------------------------------------------------
Q psy7557 383 SRGLDVPDL-THVINYDFP------------------------------------------------------------- 400 (936)
Q Consensus 383 ~~GiDip~v-~~VI~~d~p------------------------------------------------------------- 400 (936)
++|||+|+| ++||+||+|
T Consensus 334 ~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 413 (1054)
T 1gku_B 334 VRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKD 413 (1054)
T ss_dssp -CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSS
T ss_pred EeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 999999995 999999999
Q ss_pred ----------CCccccccCCCCcccCCCce--eEEEEecccChhhHHhHHHHHhh
Q psy7557 401 ----------SHIEEYVHRVGRTGRAGKSG--ESITLMTRKDWSHAHEIIPILEE 443 (936)
Q Consensus 401 ----------~s~~~y~qr~GRagR~g~~g--~~~~~~~~~~~~~~~~l~~~l~~ 443 (936)
.|..+|+||+|||||.|..| .+++++..+|...+..+.+.++.
T Consensus 414 ~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 414 VVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp SEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred eeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 78999999999999987776 58989988898888888888875
No 55
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=2.1e-42 Score=429.40 Aligned_cols=280 Identities=22% Similarity=0.285 Sum_probs=231.9
Q ss_pred hCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHh
Q psy7557 613 NLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK 692 (936)
Q Consensus 613 ~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 692 (936)
.+|| .|+|+|.+++|.+++|+|++++||||||||++|++|++..+ ..++++||++||++||.|+.+.+++
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~---------~~~~~~Lil~PtreLa~Q~~~~l~~ 143 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA---------RKGKKSALVFPTVTLVKQTLERLQK 143 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH---------TTTCCEEEEESSHHHHHHHHHHHHT
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH---------hcCCeEEEEechHHHHHHHHHHHHH
Confidence 4789 79999999999999999999999999999998888877655 3578999999999999999999999
Q ss_pred ccCCCCEEEEEECCccc---hHHHHHHhcC-ceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhc----------c-
Q psy7557 693 IDYKGLKAVCVYGGKEL---EPQLEKIREG-CHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRML----------D- 757 (936)
Q Consensus 693 ~~~~~~~~~~~~gg~~~---~~~~~~l~~~-~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~----------~- 757 (936)
+...++++..++||.+. ..+...+..+ ++|+|+||++|.+++.. +.++++++|||||||++. +
T Consensus 144 l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~ 221 (1104)
T 4ddu_A 144 LADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMM 221 (1104)
T ss_dssp TSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHT
T ss_pred hhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHh
Confidence 87678899999999988 6677778777 99999999999887764 567899999999997644 4
Q ss_pred CCCHHH-HHHHhhhcC-----------CCceEEEEEec-CChHHHH-HHHHhcCCCeEEEeCCCCcccCCceEEEEEEcC
Q psy7557 758 LGFEPQ-INKTSIYIN-----------PNRQTVMTSAT-WNKDVQR-VAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD 823 (936)
Q Consensus 758 ~~~~~~-~~~i~~~~~-----------~~~q~v~~SAT-~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 823 (936)
+||... +..+...++ ++.|+++|||| .|..+.. +...++. +.+.... .....+.+.+..+
T Consensus 222 ~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~-~~~~~i~~~~~~~- 295 (1104)
T 4ddu_A 222 VGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLV-SVARNITHVRISS- 295 (1104)
T ss_dssp SSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCC-CCCCCEEEEEESC-
T ss_pred cCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCC-CCcCCceeEEEec-
Confidence 888888 888888776 88999999999 5655442 3333332 2222221 2234455555444
Q ss_pred cchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceE-EEeCCCCHHHHHHHHHHhhcCCCcEEEe----
Q psy7557 824 EDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSC-SLYGDLSQEDREIALEDITSGYARICVA---- 898 (936)
Q Consensus 824 ~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~-~~h~~l~~~~R~~~~~~F~~g~~~vLVa---- 898 (936)
.+...+..++... .+++||||+++..|+.++..|...++.+. .+|| +|.+ ++.|++|+.+||||
T Consensus 296 --~k~~~L~~ll~~~---~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~ 364 (1104)
T 4ddu_A 296 --RSKEKLVELLEIF---RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAY 364 (1104)
T ss_dssp --CCHHHHHHHHHHH---CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTT
T ss_pred --CHHHHHHHHHHhc---CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCC
Confidence 4566677777764 37899999999999999999999999998 9999 2555 99999999999999
Q ss_pred cccCccCCCCCC-CCEEEEccCCC
Q psy7557 899 TDVASRGLDVPD-LTHVINYDFPS 921 (936)
Q Consensus 899 T~~~~~Gidip~-v~~VI~~d~p~ 921 (936)
|+++++|||+|+ |++|||||+|.
T Consensus 365 TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 365 YGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp HHHHCCSCCCTTTCCEEEEESCCE
T ss_pred CCeeEecCcCCCCCCEEEEECCCC
Confidence 999999999999 99999999998
No 56
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=4.8e-42 Score=398.78 Aligned_cols=359 Identities=18% Similarity=0.181 Sum_probs=266.8
Q ss_pred CccccCCccCChhhhCCCHHHHHHHHhhcCCceeeeecCCCCcCCCCCCCCCCCcCChHHhhcCCHHHHH----H-HHhC
Q psy7557 540 PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILR----Q-LENL 614 (936)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~f~~~~~l~~~~~~----~-l~~~ 614 (936)
.+..+..+...+++..+++++......+... .+ . .+ .++.+. .++... + ...+
T Consensus 23 ~~~~~~in~~~~~~~~lsd~el~~~t~~~~~-~~--~--~g--------------~~ld~~---l~ea~a~vrea~~r~l 80 (844)
T 1tf5_A 23 EKIANDIDAIRGDYENLSDDALKHKTIEFKE-RL--E--KG--------------ATTDDL---LVEAFAVVREASRRVT 80 (844)
T ss_dssp HHHHHHHHHTTHHHHTCCHHHHHHHHHHHHH-HH--H--TT--------------CCHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHhCCHHHHHHHHHHHHH-HH--h--cC--------------CChHHH---HHHHHHHHHHHHHHHc
Confidence 3444555666788999999998765544311 00 0 00 012221 122222 2 1248
Q ss_pred CCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc-
Q psy7557 615 SFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI- 693 (936)
Q Consensus 615 g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~- 693 (936)
|| .|+|+|..++|.+++|+ |+.|+||+|||++|.+|++...+ .|+.|+||+||++||.|+++.+..+
T Consensus 81 G~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL---------~g~~vlVltptreLA~qd~e~~~~l~ 148 (844)
T 1tf5_A 81 GM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL---------TGKGVHVVTVNEYLASRDAEQMGKIF 148 (844)
T ss_dssp SC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT---------TSSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred CC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH---------cCCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 99 99999999999999999 99999999999999999985542 3568999999999999999999887
Q ss_pred cCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHH-HHHHHcC------CCCCCCceEEEEcccchhc-cCC------
Q psy7557 694 DYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRL-NDFVSRA------SIDLKAVSFVVLDEADRML-DLG------ 759 (936)
Q Consensus 694 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l-~~~l~~~------~~~~~~i~~lViDEah~l~-~~~------ 759 (936)
...++++.+++||.+... .....++||+||||++| .+++..+ .+.++.+.++|+||||+|+ +.+
T Consensus 149 ~~lgl~v~~i~gg~~~~~--r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIi 226 (844)
T 1tf5_A 149 EFLGLTVGLNLNSMSKDE--KREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLII 226 (844)
T ss_dssp HHTTCCEEECCTTSCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEE
T ss_pred hhcCCeEEEEeCCCCHHH--HHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhh
Confidence 467999999999987543 34445799999999999 6666543 3567899999999999998 664
Q ss_pred ---------CHHHHHHHhhhcC---------CCceEE-----------------EEEecCChH---HHHH--HHHhcC-C
Q psy7557 760 ---------FEPQINKTSIYIN---------PNRQTV-----------------MTSATWNKD---VQRV--AKKYMV-N 798 (936)
Q Consensus 760 ---------~~~~~~~i~~~~~---------~~~q~v-----------------~~SAT~~~~---~~~~--~~~~~~-~ 798 (936)
|...+..+...++ +.+|++ +||||++.. +... +..++. +
T Consensus 227 sg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d 306 (844)
T 1tf5_A 227 SGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKD 306 (844)
T ss_dssp EEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBT
T ss_pred cCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcC
Confidence 5678888888886 367887 899998643 3222 222221 1
Q ss_pred CeEEE-------eC-----------------------------CCC----------------------------------
Q psy7557 799 PVKVN-------VG-----------------------------SLD---------------------------------- 808 (936)
Q Consensus 799 ~~~i~-------~~-----------------------------~~~---------------------------------- 808 (936)
...+. +. ...
T Consensus 307 ~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~ 386 (844)
T 1tf5_A 307 VDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRN 386 (844)
T ss_dssp TTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHH
T ss_pred CceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHH
Confidence 11110 00 000
Q ss_pred --------cccCCc---e-EEEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCC
Q psy7557 809 --------LAATHT---V-TQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDL 876 (936)
Q Consensus 809 --------~~~~~~---~-~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l 876 (936)
.+.... . .+.++++....|...+...+........++||||+|+..++.++..|...|+.+..+||++
T Consensus 387 iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~ 466 (844)
T 1tf5_A 387 IYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKN 466 (844)
T ss_dssp HHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSC
T ss_pred HhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCc
Confidence 000000 0 0124566778888888888765434567899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhcCCCcEEEecccCccCCCCC--------CCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 877 SQEDREIALEDITSGYARICVATDVASRGLDVP--------DLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 877 ~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip--------~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
.+.+|..+.+.|+.| .|+|||++++||+||+ ++.+||+|+.|.|.+.|+||+|||||+
T Consensus 467 ~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRq 532 (844)
T 1tf5_A 467 HEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQ 532 (844)
T ss_dssp HHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGG
T ss_pred cHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccC
Confidence 988888777667666 6999999999999999 888999999999999999999999995
No 57
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=6.1e-42 Score=396.25 Aligned_cols=377 Identities=18% Similarity=0.236 Sum_probs=287.1
Q ss_pred cccCCccccccCcCCccccCCCHHHHH----HHHhhCCCceEEeecCCCccCCCCCCCCCCcccChHHhhcCCHHH----
Q psy7557 16 WAREPKIIKNVYKEDPEVANMTPEQVE----AFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEI---- 87 (936)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~f~~~~~~~~~l---- 87 (936)
..++.++.+.+..-.+++..+++++.. .|+....... +| .++++. -|+.
T Consensus 44 lk~~~~~v~~In~le~~~~~Lsd~eL~~kt~efk~rl~~~~------~g--------------e~ld~~---lpeafA~v 100 (922)
T 1nkt_A 44 VKRLKKVADYVGTLSDDVEKLTDAELRAKTDEFKRRLADQK------NP--------------ETLDDL---LPEAFAVA 100 (922)
T ss_dssp HHHHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHHCSS------SC--------------CCHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHhcc------cC--------------CCHHHH---HHHHHHHH
Confidence 344555666666667889999999885 4444321000 01 124443 1222
Q ss_pred HHHH-HhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHH
Q psy7557 88 LRQL-ENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQI 166 (936)
Q Consensus 88 ~~~l-~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~ 166 (936)
.++. ..+|+ .|+|+|..++|.++.|+ |+.++||+|||++|.+|++...+ .+..++||+||++||.|+
T Consensus 101 rEa~~R~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL---------~g~~v~VvTpTreLA~Qd 168 (922)
T 1nkt_A 101 REAAWRVLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNAL---------AGNGVHIVTVNDYLAKRD 168 (922)
T ss_dssp HHHHHHHHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHT---------TTSCEEEEESSHHHHHHH
T ss_pred HHHHHHHcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHH---------hCCCeEEEeCCHHHHHHH
Confidence 2233 34798 99999999999999998 99999999999999999986553 256799999999999999
Q ss_pred HHHHHhc-cCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchh-HHHHHcC------CcCCCCceEEEEccchhhh-c
Q psy7557 167 EREVNKI-DYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRL-NDFVSRA------SIDLKAVSFVVLDEADRML-D 237 (936)
Q Consensus 167 ~~~~~~~-~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~------~~~~~~~~~lViDEah~l~-~ 237 (936)
++.+..+ ...|+++.+++||.+.. ......+++|+||||++| .|+|..+ ...++.+.++|+||||+|+ |
T Consensus 169 ae~m~~l~~~lGLsv~~i~gg~~~~--~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiD 246 (922)
T 1nkt_A 169 SEWMGRVHRFLGLQVGVILATMTPD--ERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILID 246 (922)
T ss_dssp HHHHHHHHHHTTCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTT
T ss_pred HHHHHHHHhhcCCeEEEEeCCCCHH--HHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHh
Confidence 9999986 46799999999998743 334445699999999999 7877654 3567889999999999998 4
Q ss_pred C---------------CCHHHHHHHHhhcC---------CCCcEE-----------------EEEeccch---HHHHH--
Q psy7557 238 L---------------GFEPQINKTSIYIN---------PNRQTV-----------------MTSATWNK---DVQRV-- 271 (936)
Q Consensus 238 ~---------------~~~~~~~~i~~~~~---------~~~q~~-----------------~~SAT~~~---~~~~~-- 271 (936)
. +|...+..+...++ +.+|++ ++|||.+. .+...
T Consensus 247 eartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~ 326 (922)
T 1nkt_A 247 EARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALK 326 (922)
T ss_dssp GGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHH
T ss_pred cCccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHH
Confidence 3 57889999999997 678998 99999874 33322
Q ss_pred HHHhcC-C-------CEEEEeCCCC----------------------cc------cCCceE-------------------
Q psy7557 272 AKKYMV-N-------PVKVNVGSLD----------------------LA------ATHTVT------------------- 296 (936)
Q Consensus 272 ~~~~~~-~-------~~~i~~~~~~----------------------~~------~~~~~~------------------- 296 (936)
+..++. + +..+.+.... .. ....+.
T Consensus 327 A~~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~ 406 (922)
T 1nkt_A 327 AKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQ 406 (922)
T ss_dssp HHHHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCG
T ss_pred HHHHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCch
Confidence 222221 1 1111111100 00 000000
Q ss_pred ----------------------------EEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCc
Q psy7557 297 ----------------------------QKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRK 348 (936)
Q Consensus 297 ----------------------------~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~ 348 (936)
+.++.+...+|...+...+......+.++||||+|+..++.++..|...|++
T Consensus 407 te~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~ 486 (922)
T 1nkt_A 407 TEAAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIP 486 (922)
T ss_dssp GGHHHHHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCC
Confidence 1234566677888888887665455679999999999999999999999999
Q ss_pred eeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCC-------------------------------------
Q psy7557 349 SCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDL------------------------------------- 391 (936)
Q Consensus 349 ~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v------------------------------------- 391 (936)
+..+||++.+.++..+.+.|+.| .|+||||+++||+||+.+
T Consensus 487 ~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (922)
T 1nkt_A 487 HNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVK 564 (922)
T ss_dssp CEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHH
T ss_pred EEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHH
Confidence 99999999888888888889888 599999999999999975
Q ss_pred ---------------cEEEEecCCCCccccccCCCCcccCCCceeEEEEecccCh
Q psy7557 392 ---------------THVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDW 431 (936)
Q Consensus 392 ---------------~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~ 431 (936)
.+||+|+.|.|...|+||+|||||.|.+|.+++|++..|.
T Consensus 565 ~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 565 EEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 5999999999999999999999999999999999998874
No 58
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.5e-42 Score=413.42 Aligned_cols=347 Identities=19% Similarity=0.184 Sum_probs=258.5
Q ss_pred HHHHHHhCCCCCCcHHHHHHHHHHhcC------CcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcH
Q psy7557 87 ILRQLENLSFTTPSPIQAQAWPILMSG------HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTR 160 (936)
Q Consensus 87 l~~~l~~~g~~~~~~~Q~~ai~~~~~g------~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~ 160 (936)
+.+.+..+|| +||++|.++++.++++ +|++++||||||||++|++|++..+. .+.+++|++||+
T Consensus 358 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~---------~g~qvlvlaPtr 427 (780)
T 1gm5_A 358 AEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE---------AGFQTAFMVPTS 427 (780)
T ss_dssp HHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH---------HTSCEEEECSCH
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHH---------cCCeEEEEeCcH
Confidence 3445678999 9999999999998875 69999999999999999999997763 367899999999
Q ss_pred HHHHHHHHHHHhc-cCCCCEEEEEeCCccchHH---HHHhhcC-CcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhh
Q psy7557 161 ELATQIEREVNKI-DYKGLKAVCVYGGKEIEPQ---LEKIREG-CHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRM 235 (936)
Q Consensus 161 ~La~Q~~~~~~~~-~~~~~~~~~~~gg~~~~~~---~~~~~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l 235 (936)
+||.|+++.++++ ...++++..++|+...... +..+..| ++|+|+||+.+.+ .+.+.+++++|+||+|++
T Consensus 428 ~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~ 502 (780)
T 1gm5_A 428 ILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRF 502 (780)
T ss_dssp HHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC
T ss_pred HHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchh
Confidence 9999999999985 4568999999999776543 4455555 9999999998754 456889999999999996
Q ss_pred hcCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHH
Q psy7557 236 LDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFF 315 (936)
Q Consensus 236 ~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l 315 (936)
... ....+......+++++||||+++...........+...+...... ...+... +....+...+.+.+
T Consensus 503 g~~-----qr~~l~~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~---r~~i~~~---~~~~~~~~~l~~~i 571 (780)
T 1gm5_A 503 GVK-----QREALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPG---RKEVQTM---LVPMDRVNEVYEFV 571 (780)
T ss_dssp ----------CCCCSSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSS---CCCCEEC---CCCSSTHHHHHHHH
T ss_pred hHH-----HHHHHHHhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCC---CcceEEE---EeccchHHHHHHHH
Confidence 321 112222234578999999998776654443222222222111111 1122221 12233445556666
Q ss_pred HhccCCCCcEEEEeCch--------HHHHHHHHHhhh---cCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEeccccc
Q psy7557 316 DNMDEERDKVMVFMGRK--------ASVSAMSSDLAC---QYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASR 384 (936)
Q Consensus 316 ~~~~~~~~~~iVF~~~~--------~~~~~l~~~L~~---~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~ 384 (936)
......+.+++|||++. ..+..+++.|.. .+..+..+||+|++.+|..+++.|++|+++|||||+++++
T Consensus 572 ~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~ 651 (780)
T 1gm5_A 572 RQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEV 651 (780)
T ss_dssp HHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCS
T ss_pred HHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCc
Confidence 55546678999999966 357888888887 4678999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEecCCC-CccccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHhhcCCccchhhhhcccccee
Q psy7557 385 GLDVPDLTHVINYDFPS-HIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEGGHESYMIWRRDSRIALH 461 (936)
Q Consensus 385 GiDip~v~~VI~~d~p~-s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 461 (936)
|+|+|++++||++|+|. +...|.||+||+||.|..|.|++++++. .....+.++.++... +.+.+...+.++++.
T Consensus 652 GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~-~~~~~~rl~~l~~~~-dgf~iae~dL~~Rg~ 727 (780)
T 1gm5_A 652 GIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDV-GEEAMERLRFFTLNT-DGFKIAEYDLKTRGP 727 (780)
T ss_dssp CSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSC-CHHHHHHHHHHHTCC-CSHHHHHHHHHSSCC
T ss_pred cccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCC-ChHHHHHHHHHHhhh-ccchhhHhhHhccCc
Confidence 99999999999999997 7888999999999999999999999843 334445556666543 345555555555533
No 59
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.8e-41 Score=433.30 Aligned_cols=341 Identities=16% Similarity=0.186 Sum_probs=262.6
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHHHHHHHhc-CCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHH
Q psy7557 83 HYPEILRQLENLSFTTPSPIQAQAWPILMS-GHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRE 161 (936)
Q Consensus 83 ~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~-g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~ 161 (936)
+.+...+.+...+|..++|+|.++++.++. ++|++++||||||||++|.+|++..+.. ..+.++||++||++
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~-------~~~~kavyi~P~ra 983 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQ-------SSEGRCVYITPMEA 983 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHH-------CTTCCEEEECSCHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHh-------CCCCEEEEEcChHH
Confidence 445677888888999999999999999975 5789999999999999999999988754 34568999999999
Q ss_pred HHHHHHHHHHh-cc-CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcC--CcCCCCceEEEEccchhhhc
Q psy7557 162 LATQIEREVNK-ID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRA--SIDLKAVSFVVLDEADRMLD 237 (936)
Q Consensus 162 La~Q~~~~~~~-~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~--~~~~~~~~~lViDEah~l~~ 237 (936)
||.|+++.+++ |+ ..|+++..++|+...... ...+++|+|+|||+|..++.+. ...+++++++|+||+|++.+
T Consensus 984 La~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d 1060 (1724)
T 4f92_B 984 LAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG 1060 (1724)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS
T ss_pred HHHHHHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCC
Confidence 99999999976 65 368899999887654322 2345899999999996666543 23478999999999998877
Q ss_pred CCCHHHHHHHH-------hhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhH--
Q psy7557 238 LGFEPQINKTS-------IYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKK-- 308 (936)
Q Consensus 238 ~~~~~~~~~i~-------~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~-- 308 (936)
. .+..+..++ ...++..|++++|||++ +..+++.++..++..+...... ..+..+...+.........
T Consensus 1061 ~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~-N~~dla~WL~~~~~~~~~~~~~-~RPvpL~~~i~~~~~~~~~~~ 1137 (1724)
T 4f92_B 1061 E-NGPVLEVICSRMRYISSQIERPIRIVALSSSLS-NAKDVAHWLGCSATSTFNFHPN-VRPVPLELHIQGFNISHTQTR 1137 (1724)
T ss_dssp T-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBT-THHHHHHHHTCCSTTEEECCGG-GCSSCEEEEEEEECCCSHHHH
T ss_pred C-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCC-CHHHHHHHhCCCCCCeEEeCCC-CCCCCeEEEEEeccCCCchhh
Confidence 4 555554433 34567899999999998 5678888876554322222222 2344555555444432222
Q ss_pred -----HHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhh----------------------------------cCCce
Q psy7557 309 -----DWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLAC----------------------------------QYRKS 349 (936)
Q Consensus 309 -----~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~----------------------------------~~~~~ 349 (936)
..+...+... ...+++||||++++.|+.+|..|.. ...++
T Consensus 1138 ~~~~~~~~~~~i~~~-~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GI 1216 (1724)
T 4f92_B 1138 LLSMAKPVYHAITKH-SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGV 1216 (1724)
T ss_dssp HHTTHHHHHHHHHHH-CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTE
T ss_pred hhhhcchHHHHHHHh-cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCE
Confidence 1223334443 4578999999999999988876642 12467
Q ss_pred eeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEE----ec------CCCCccccccCCCCcccCCC-
Q psy7557 350 CSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVIN----YD------FPSHIEEYVHRVGRTGRAGK- 418 (936)
Q Consensus 350 ~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~d------~p~s~~~y~qr~GRagR~g~- 418 (936)
+.|||||++.+|..+++.|++|.++|||||+++++|||+|++.+||. || .|.++.+|+||+|||||+|.
T Consensus 1217 a~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d 1296 (1724)
T 4f92_B 1217 GYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQD 1296 (1724)
T ss_dssp EEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTC
T ss_pred EEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCC
Confidence 88999999999999999999999999999999999999999999993 33 35689999999999999987
Q ss_pred -ceeEEEEecccChhhHHhH
Q psy7557 419 -SGESITLMTRKDWSHAHEI 437 (936)
Q Consensus 419 -~g~~~~~~~~~~~~~~~~l 437 (936)
.|.|++++.+.+...+..+
T Consensus 1297 ~~G~avll~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1297 DEGRCVIMCQGSKKDFFKKF 1316 (1724)
T ss_dssp SCEEEEEEEEGGGHHHHHHH
T ss_pred CceEEEEEecchHHHHHHHH
Confidence 6999999998876655444
No 60
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=3.2e-41 Score=421.79 Aligned_cols=383 Identities=17% Similarity=0.170 Sum_probs=291.2
Q ss_pred CCHHHHHHH-HhCCCCCCcHHHHHHHHHHhc----CC--cEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEE
Q psy7557 83 HYPEILRQL-ENLSFTTPSPIQAQAWPILMS----GH--DMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLV 155 (936)
Q Consensus 83 ~~~~l~~~l-~~~g~~~~~~~Q~~ai~~~~~----g~--d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~li 155 (936)
.++...+.+ ..++| +|||+|.+|++.+++ |+ |+++++|||||||++|+++++... ..+++++|
T Consensus 588 ~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~---------~~g~~vlv 657 (1151)
T 2eyq_A 588 HDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV---------DNHKQVAV 657 (1151)
T ss_dssp CCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHH---------TTTCEEEE
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHH---------HhCCeEEE
Confidence 344455555 45788 579999999999886 66 999999999999999999888765 34679999
Q ss_pred EcCcHHHHHHHHHHHHh-ccCCCCEEEEEeCCccchH---HHHHhhcC-CcEEEeCCchhHHHHHcCCcCCCCceEEEEc
Q psy7557 156 MAPTRELATQIEREVNK-IDYKGLKAVCVYGGKEIEP---QLEKIREG-CHILIATPGRLNDFVSRASIDLKAVSFVVLD 230 (936)
Q Consensus 156 l~Pt~~La~Q~~~~~~~-~~~~~~~~~~~~gg~~~~~---~~~~~~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViD 230 (936)
++||++||.|+++.+++ +...++++..+.|...... .+..+..+ ++|+|+||+.+. ..+.++++++||||
T Consensus 658 lvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiD 732 (1151)
T 2eyq_A 658 LVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVD 732 (1151)
T ss_dssp ECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEE
T ss_pred EechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEe
Confidence 99999999999999987 4556788888887655433 34445555 999999997652 35678999999999
Q ss_pred cchhhhcCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHH
Q psy7557 231 EADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDW 310 (936)
Q Consensus 231 Eah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 310 (936)
|||++ ......++..++++.++++||||+++....+....+.++..+...... ...+...+....... .
T Consensus 733 EaH~~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~---r~~i~~~~~~~~~~~---i 801 (1151)
T 2eyq_A 733 EEHRF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR---RLAVKTFVREYDSMV---V 801 (1151)
T ss_dssp SGGGS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCB---CBCEEEEEEECCHHH---H
T ss_pred chHhc-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCC---ccccEEEEecCCHHH---H
Confidence 99994 344555566667789999999999888877777776665544332211 223444333333222 2
Q ss_pred HHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhc--CCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCC
Q psy7557 311 LMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQ--YRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDV 388 (936)
Q Consensus 311 l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDi 388 (936)
...++... ..+++++|||+++..++.+++.|... +.++..+||+|++.+|..+++.|++|+++|||||+++++|+|+
T Consensus 802 ~~~il~~l-~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDi 880 (1151)
T 2eyq_A 802 REAILREI-LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI 880 (1151)
T ss_dssp HHHHHHHH-TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCC
T ss_pred HHHHHHHH-hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecc
Confidence 22233333 45789999999999999999999987 7889999999999999999999999999999999999999999
Q ss_pred CCCcEEEEecC-CCCccccccCCCCcccCCCceeEEEEecccC--hhhHHhHHHHHhhcCC--ccchhhhhccccceeEe
Q psy7557 389 PDLTHVINYDF-PSHIEEYVHRVGRTGRAGKSGESITLMTRKD--WSHAHEIIPILEEGGH--ESYMIWRRDSRIALHVI 463 (936)
Q Consensus 389 p~v~~VI~~d~-p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~--~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~~~~~ 463 (936)
|++++||+++. +.++.+|+||+||+||.|+.|.|++++.+.+ ...+.+.++.++.... ..+.+...+..+++.+.
T Consensus 881 p~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~~l~~~~~~rl~~i~~~~~lg~gf~ia~~dl~irg~g~ 960 (1151)
T 2eyq_A 881 PTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGE 960 (1151)
T ss_dssp TTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGGGSCHHHHHHHHHHTTCCSBSHHHHHHHHHHHHHHHHH
T ss_pred cCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCccccCHHHHHHHHHHHHhhccCCcchHHHHHhccCCCcc
Confidence 99999999998 4689999999999999999999999997654 2345555666665532 24566777777777666
Q ss_pred ecCCceeeecccCCCcchhhhcccchhhh
Q psy7557 464 LEGGEEVVEEEEGGEDGMEILVGVDLEVV 492 (936)
Q Consensus 464 ~~~~~~~~~~~e~~~~~~~~~~~~~l~~~ 492 (936)
..+.++.+.....+.+.+..++..+.+..
T Consensus 961 ~lg~~q~g~i~~~~~~~~~~~l~~a~~~~ 989 (1151)
T 2eyq_A 961 LLGEEQSGSMETIGFSLYMELLENAVDAL 989 (1151)
T ss_dssp HHCHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred cCCccccCChhhccHHHHHHHHHHHHHHH
Confidence 66666666666666666655555544443
No 61
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2e-41 Score=401.73 Aligned_cols=316 Identities=17% Similarity=0.178 Sum_probs=192.6
Q ss_pred CCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhcc
Q psy7557 615 SFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID 694 (936)
Q Consensus 615 g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 694 (936)
+.-.|+|+|.++++.+++|+|+++++|||||||++|++|++..+.... ...++++||++||++|+.|+.+.++++.
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~----~~~~~~~lil~P~~~L~~q~~~~~~~~~ 79 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP----AGRKAKVVFLATKVPVYEQQKNVFKHHF 79 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC----SSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc----ccCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 344899999999999999999999999999999999999988775432 1337789999999999999999999874
Q ss_pred -CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCC-CCCCceEEEEcccchhccCCCHHHHH-HHh-hh
Q psy7557 695 -YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASI-DLKAVSFVVLDEADRMLDLGFEPQIN-KTS-IY 770 (936)
Q Consensus 695 -~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~-~~~~i~~lViDEah~l~~~~~~~~~~-~i~-~~ 770 (936)
..++++..++|+.....+...+..+++|+|+||+++.+.+..+.+ .+.++++||+||||++.+++....+. ... ..
T Consensus 80 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~ 159 (556)
T 4a2p_A 80 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 159 (556)
T ss_dssp GGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHH
T ss_pred cccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhh
Confidence 348899999999877777777777899999999999999988877 78999999999999998877443332 221 11
Q ss_pred ---cCCCceEEEEEecCCh-----------HHHHHHHHhc------------------CCCeEEEeCCCCcccCCc----
Q psy7557 771 ---INPNRQTVMTSATWNK-----------DVQRVAKKYM------------------VNPVKVNVGSLDLAATHT---- 814 (936)
Q Consensus 771 ---~~~~~q~v~~SAT~~~-----------~~~~~~~~~~------------------~~~~~i~~~~~~~~~~~~---- 814 (936)
..+..|++++|||++. .+..+...+. ..|.......... ....
T Consensus 160 ~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 238 (556)
T 4a2p_A 160 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRR-IHNPFAAI 238 (556)
T ss_dssp HCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCC-SCCHHHHH
T ss_pred hcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCC-cCChHHHH
Confidence 1467899999999853 1112222221 1111111100000 0000
Q ss_pred -----------------eEEEEE---------------------------------------------------------
Q psy7557 815 -----------------VTQKII--------------------------------------------------------- 820 (936)
Q Consensus 815 -----------------~~~~~~--------------------------------------------------------- 820 (936)
......
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (556)
T 4a2p_A 239 ISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 318 (556)
T ss_dssp HHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000000
Q ss_pred ------------------------------------------------EcCcchhHHHHHHHHHhcc--CCCCcEEEEcC
Q psy7557 821 ------------------------------------------------ILDEDEKKDWLMEFFDNMD--EERDKVMVFMG 850 (936)
Q Consensus 821 ------------------------------------------------~~~~~~k~~~l~~~l~~~~--~~~~~~iIF~~ 850 (936)
......|...|.+++.... ....++||||+
T Consensus 319 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~ 398 (556)
T 4a2p_A 319 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 398 (556)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEES
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEc
Confidence 0001335555555555432 45689999999
Q ss_pred ChHHHHHHHHHHHhc------------CCceEEEeCCCCHHHHHHHHHHhhc-CCCcEEEecccCccCCCCCCCCEEEEc
Q psy7557 851 RKASVSAMSSDLACQ------------YRKSCSLYGDLSQEDREIALEDITS-GYARICVATDVASRGLDVPDLTHVINY 917 (936)
Q Consensus 851 s~~~~~~l~~~L~~~------------~~~~~~~h~~l~~~~R~~~~~~F~~-g~~~vLVaT~~~~~Gidip~v~~VI~~ 917 (936)
++..++.++..|... |.+...+||+|++.+|..+++.|++ |+++|||||+++++|||+|++++||+|
T Consensus 399 ~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~ 478 (556)
T 4a2p_A 399 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLY 478 (556)
T ss_dssp SHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEE
T ss_pred cHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEe
Confidence 999999999999875 4555667889999999999999999 999999999999999999999999999
Q ss_pred cCCCChhhhHhhhhhccCC
Q psy7557 918 DFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 918 d~p~s~~~yiqr~GRaGR~ 936 (936)
|+|.|..+|+||+|| ||.
T Consensus 479 d~p~s~~~~~Qr~GR-gR~ 496 (556)
T 4a2p_A 479 EYSGNVTKMIQVRGR-GRA 496 (556)
T ss_dssp TCCSCHHHHHHC-------
T ss_pred CCCCCHHHHHHhcCC-CCC
Confidence 999999999999999 984
No 62
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=5.7e-41 Score=413.30 Aligned_cols=310 Identities=19% Similarity=0.204 Sum_probs=246.2
Q ss_pred hCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHh
Q psy7557 93 NLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK 172 (936)
Q Consensus 93 ~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 172 (936)
..+| +|+|+|.++|+.+++|+|++++||||||||++|++|+.... ..++++||++||++|+.|+++.+++
T Consensus 35 ~~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~---------~~g~~vlvl~PtraLa~Q~~~~l~~ 104 (997)
T 4a4z_A 35 SWPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAH---------RNMTKTIYTSPIKALSNQKFRDFKE 104 (997)
T ss_dssp CCSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHH---------HTTCEEEEEESCGGGHHHHHHHHHT
T ss_pred hCCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHH---------hcCCeEEEEeCCHHHHHHHHHHHHH
Confidence 4567 69999999999999999999999999999999999887654 3467999999999999999999998
Q ss_pred ccCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHHHhhcC
Q psy7557 173 IDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYIN 252 (936)
Q Consensus 173 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~ 252 (936)
+. .++++..++|+..... .++|+|+||++|.+++......+.++++|||||||++.++++...+..+...++
T Consensus 105 ~~-~~~~v~~l~G~~~~~~-------~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~ 176 (997)
T 4a4z_A 105 TF-DDVNIGLITGDVQINP-------DANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLP 176 (997)
T ss_dssp TC---CCEEEECSSCEECT-------TSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSC
T ss_pred Hc-CCCeEEEEeCCCccCC-------CCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcc
Confidence 53 2678899999876542 389999999999999988877889999999999999999999999999999999
Q ss_pred CCCcEEEEEeccchHHHHHHHHhc---CCCEEEEeCCCCcccCCceEEEEE-----------------------------
Q psy7557 253 PNRQTVMTSATWNKDVQRVAKKYM---VNPVKVNVGSLDLAATHTVTQKII----------------------------- 300 (936)
Q Consensus 253 ~~~q~~~~SAT~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~----------------------------- 300 (936)
++.|++++|||+|+.. +++.++. ..++.+...... +..+.+.+.
T Consensus 177 ~~v~iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r---~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 252 (997)
T 4a4z_A 177 QHVKFILLSATVPNTY-EFANWIGRTKQKNIYVISTPKR---PVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNG 252 (997)
T ss_dssp TTCEEEEEECCCTTHH-HHHHHHHHHHTCCEEEEECSSC---SSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-
T ss_pred cCCCEEEEcCCCCChH-HHHHHHhcccCCceEEEecCCC---CccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhc
Confidence 9999999999998543 4444432 123322221111 111111111
Q ss_pred ----------------------------------------------------------------EeCchhhHHHHHHHHH
Q psy7557 301 ----------------------------------------------------------------ILDEDEKKDWLMEFFD 316 (936)
Q Consensus 301 ----------------------------------------------------------------~~~~~~k~~~l~~~l~ 316 (936)
......+...+...+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~ 332 (997)
T 4a4z_A 253 ESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLR 332 (997)
T ss_dssp ----------------------------------------------------------------CCCCTTHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHH
Confidence 0012233445555555
Q ss_pred hccCCCCcEEEEeCchHHHHHHHHHhhhcCC---------------------------------------ceeeecCCCC
Q psy7557 317 NMDEERDKVMVFMGRKASVSAMSSDLACQYR---------------------------------------KSCSLYGDLS 357 (936)
Q Consensus 317 ~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~---------------------------------------~~~~~h~~~~ 357 (936)
.. ...++||||++++.|+.++..|...++ ++..+||+|+
T Consensus 333 ~~--~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~ 410 (997)
T 4a4z_A 333 KR--ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLL 410 (997)
T ss_dssp HT--TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSC
T ss_pred hC--CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCC
Confidence 53 457999999999999999999976554 5789999999
Q ss_pred HHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEecCCC---------CccccccCCCCcccCC--CceeEEEEe
Q psy7557 358 QEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPS---------HIEEYVHRVGRTGRAG--KSGESITLM 426 (936)
Q Consensus 358 ~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~---------s~~~y~qr~GRagR~g--~~g~~~~~~ 426 (936)
+.+|..+++.|++|.++|||||+++++|||+|++ .||+++.|+ |..+|+||+|||||.| ..|.+++++
T Consensus 411 ~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~-~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~ 489 (997)
T 4a4z_A 411 PIVKELIEILFSKGFIKVLFATETFAMGLNLPTR-TVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMA 489 (997)
T ss_dssp HHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCS-EEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEEC
T ss_pred HHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCc-eEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEec
Confidence 9999999999999999999999999999999994 455444444 9999999999999998 557777777
Q ss_pred c
Q psy7557 427 T 427 (936)
Q Consensus 427 ~ 427 (936)
.
T Consensus 490 ~ 490 (997)
T 4a4z_A 490 Y 490 (997)
T ss_dssp C
T ss_pred C
Confidence 3
No 63
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=5.6e-42 Score=416.78 Aligned_cols=324 Identities=20% Similarity=0.215 Sum_probs=210.3
Q ss_pred HHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHH
Q psy7557 608 LRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIE 687 (936)
Q Consensus 608 ~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~ 687 (936)
.+.|..+||..|+|+|.++++.+++|+|+++++|||+|||++|++|++.++.... ...++++||++||++|+.|+.
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~----~~~~~~~lvl~Pt~~L~~Q~~ 78 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP----QGQKGKVVFFANQIPVYEQNK 78 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC----TTCCCCEEEECSSHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc----cCCCCeEEEEECCHHHHHHHH
Confidence 3467789999999999999999999999999999999999999999997765422 123478999999999999999
Q ss_pred HHHHhcc-CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCC-CCCCceEEEEcccchhccCCCH-HHH
Q psy7557 688 REVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASI-DLKAVSFVVLDEADRMLDLGFE-PQI 764 (936)
Q Consensus 688 ~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~-~~~~i~~lViDEah~l~~~~~~-~~~ 764 (936)
+.++++. ..++++..++||.....+...+..+++|+|+||++|.+.+..+.+ .+.++++|||||||++.+.+.. ..+
T Consensus 79 ~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~ 158 (696)
T 2ykg_A 79 SVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIM 158 (696)
T ss_dssp HHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHH
T ss_pred HHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHH
Confidence 9999875 347899999999877666677777899999999999999988766 6889999999999998865522 222
Q ss_pred HHHhh-----hcCCCceEEEEEecCC-------hH-HHHHHHH---------------------hcCCCeEEEeCCCCcc
Q psy7557 765 NKTSI-----YINPNRQTVMTSATWN-------KD-VQRVAKK---------------------YMVNPVKVNVGSLDLA 810 (936)
Q Consensus 765 ~~i~~-----~~~~~~q~v~~SAT~~-------~~-~~~~~~~---------------------~~~~~~~i~~~~~~~~ 810 (936)
...+. ..++..+++++|||+. .. ...+... +...|...........
T Consensus 159 ~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~ 238 (696)
T 2ykg_A 159 FNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRI 238 (696)
T ss_dssp HHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCS
T ss_pred HHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCccc
Confidence 21221 1246789999999986 11 1111111 1112211110000000
Q ss_pred c-------------------------------------------------------------------------------
Q psy7557 811 A------------------------------------------------------------------------------- 811 (936)
Q Consensus 811 ~------------------------------------------------------------------------------- 811 (936)
.
T Consensus 239 ~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 318 (696)
T 2ykg_A 239 SDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRK 318 (696)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHH
Confidence 0
Q ss_pred -------------------------------CCceEEEEE-------------Ec---CcchhHHHHHHHHHhcc--CCC
Q psy7557 812 -------------------------------THTVTQKII-------------IL---DEDEKKDWLMEFFDNMD--EER 842 (936)
Q Consensus 812 -------------------------------~~~~~~~~~-------------~~---~~~~k~~~l~~~l~~~~--~~~ 842 (936)
...+.+.+. .. ....|...+.+++.... ...
T Consensus 319 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~ 398 (696)
T 2ykg_A 319 YNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPE 398 (696)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTT
T ss_pred HhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCC
Confidence 000000000 00 13446666777766542 346
Q ss_pred CcEEEEcCChHHHHHHHHHHHhcC----CceEEE--------eCCCCHHHHHHHHHHhhc-CCCcEEEecccCccCCCCC
Q psy7557 843 DKVMVFMGRKASVSAMSSDLACQY----RKSCSL--------YGDLSQEDREIALEDITS-GYARICVATDVASRGLDVP 909 (936)
Q Consensus 843 ~~~iIF~~s~~~~~~l~~~L~~~~----~~~~~~--------h~~l~~~~R~~~~~~F~~-g~~~vLVaT~~~~~Gidip 909 (936)
+++||||+++..++.++..|...+ +.+..+ ||+|++++|..+++.|++ |+.+|||||+++++|||+|
T Consensus 399 ~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip 478 (696)
T 2ykg_A 399 TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIA 478 (696)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---C
T ss_pred CcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCc
Confidence 789999999999999999999887 777777 569999999999999998 9999999999999999999
Q ss_pred CCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 910 DLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 910 ~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
++++||+||+|.|..+|+||+|| ||.
T Consensus 479 ~v~~VI~~d~p~s~~~~~Qr~GR-GR~ 504 (696)
T 2ykg_A 479 QCNLVILYEYVGNVIKMIQTRGR-GRA 504 (696)
T ss_dssp CCSEEEEESCC--CCCC----------
T ss_pred cCCEEEEeCCCCCHHHHHHhhcc-CcC
Confidence 99999999999999999999999 994
No 64
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=3.9e-41 Score=415.92 Aligned_cols=335 Identities=17% Similarity=0.207 Sum_probs=210.7
Q ss_pred hCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHh
Q psy7557 93 NLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK 172 (936)
Q Consensus 93 ~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 172 (936)
-.|+.+|+|+|.++++.+++|+|+++++|||||||++|++|++..+.... ...++++|||+||++|+.|+++.+++
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~----~~~~~~vLvl~Pt~~L~~Q~~~~~~~ 318 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP----AGRKAKVVFLATKVPVYEQQKNVFKH 318 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC----SSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc----ccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 34788999999999999999999999999999999999999886654321 12367899999999999999999999
Q ss_pred cc-CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCc-CCCCceEEEEccchhhhcCCCHHH-HHHHHh
Q psy7557 173 ID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASI-DLKAVSFVVLDEADRMLDLGFEPQ-INKTSI 249 (936)
Q Consensus 173 ~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~-~~~~~~~lViDEah~l~~~~~~~~-~~~i~~ 249 (936)
+. ..++++..++||.....+...+..+++|+|+||++|.+.+..+.+ .+.++++||+||||++...+.... +..+..
T Consensus 319 ~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~ 398 (936)
T 4a2w_A 319 HFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (936)
T ss_dssp HHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHH
T ss_pred HhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHH
Confidence 64 458999999999877666666666799999999999999988776 788999999999999987753322 223222
Q ss_pred h----cCCCCcEEEEEeccch-----------HHHHHHH------------------HhcCCCEEEEeCCCCcccCC---
Q psy7557 250 Y----INPNRQTVMTSATWNK-----------DVQRVAK------------------KYMVNPVKVNVGSLDLAATH--- 293 (936)
Q Consensus 250 ~----~~~~~q~~~~SAT~~~-----------~~~~~~~------------------~~~~~~~~i~~~~~~~~~~~--- 293 (936)
. ..+..|++++|||++. .+..+.. .+...|..............
T Consensus 399 ~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~ 478 (936)
T 4a2w_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 478 (936)
T ss_dssp HHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHH
T ss_pred HhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHH
Confidence 2 1556899999999852 1222221 11222221111000000000
Q ss_pred --------------------ce--EEEEEEe-------------------------------------------------
Q psy7557 294 --------------------TV--TQKIIIL------------------------------------------------- 302 (936)
Q Consensus 294 --------------------~~--~~~~~~~------------------------------------------------- 302 (936)
.+ .......
T Consensus 479 ~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i 558 (936)
T 4a2w_A 479 IISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 558 (936)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 00 0000000
Q ss_pred ---------------------------------------------------CchhhHHHHHHHHHhcc--CCCCcEEEEe
Q psy7557 303 ---------------------------------------------------DEDEKKDWLMEFFDNMD--EERDKVMVFM 329 (936)
Q Consensus 303 ---------------------------------------------------~~~~k~~~l~~~l~~~~--~~~~~~iVF~ 329 (936)
....|...|.+++.... ..+.++||||
T Consensus 559 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~ 638 (936)
T 4a2w_A 559 SEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFA 638 (936)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEE
T ss_pred hcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEe
Confidence 01234444555555431 4568999999
Q ss_pred CchHHHHHHHHHhhhc------------CCceeeecCCCCHHHHHHHHHHhhc-CCcEEEEEecccccCCCCCCCcEEEE
Q psy7557 330 GRKASVSAMSSDLACQ------------YRKSCSLYGDLSQEDREIALEDITS-GYARICVATDVASRGLDVPDLTHVIN 396 (936)
Q Consensus 330 ~~~~~~~~l~~~L~~~------------~~~~~~~h~~~~~~~R~~~~~~f~~-g~~~vLvaT~~~~~GiDip~v~~VI~ 396 (936)
+++..++.++..|... |.....+||+|++.+|..+++.|++ |+++|||||+++++|||+|++++||+
T Consensus 639 ~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~ 718 (936)
T 4a2w_A 639 KTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL 718 (936)
T ss_dssp SSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEE
T ss_pred CCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEE
Confidence 9999999999999876 5556667999999999999999999 99999999999999999999999999
Q ss_pred ecCCCCccccccCCCCcccCCCceeEEEEecccChhh
Q psy7557 397 YDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSH 433 (936)
Q Consensus 397 ~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~ 433 (936)
||+|.|+.+|+||+|| ||. +.|.+++|++..+...
T Consensus 719 yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ee 753 (936)
T 4a2w_A 719 YEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 753 (936)
T ss_dssp ESCCSCSHHHHCC---------CCCEEEEESCHHHHH
T ss_pred eCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHHH
Confidence 9999999999999999 999 7899999998876543
No 65
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-40 Score=405.67 Aligned_cols=300 Identities=20% Similarity=0.200 Sum_probs=241.6
Q ss_pred HHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHH
Q psy7557 611 LENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREV 690 (936)
Q Consensus 611 l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~ 690 (936)
...++| .|+|+|.+|++.+.+|++++++||||||||++|.+|++..+ ..++++||++||++|+.|+++.+
T Consensus 80 ~~~~~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l---------~~g~rvL~l~PtkaLa~Q~~~~l 149 (1010)
T 2xgj_A 80 ARTYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSL---------KNKQRVIYTSPIKALSNQKYREL 149 (1010)
T ss_dssp SCCCSS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHH---------HTTCEEEEEESSHHHHHHHHHHH
T ss_pred HHhCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHh---------ccCCeEEEECChHHHHHHHHHHH
Confidence 345688 49999999999999999999999999999999999988765 24679999999999999999999
Q ss_pred HhccCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHHHhhh
Q psy7557 691 NKIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIY 770 (936)
Q Consensus 691 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~ 770 (936)
.++.. .+..++|+..... +++|+|+||++|.+++.++...++++++|||||||++.++++...+..+...
T Consensus 150 ~~~~~---~vglltGd~~~~~-------~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~ 219 (1010)
T 2xgj_A 150 LAEFG---DVGLMTGDITINP-------DAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIIL 219 (1010)
T ss_dssp HHHHS---CEEEECSSCEECT-------TCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHH
T ss_pred HHHhC---CEEEEeCCCccCC-------CCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHh
Confidence 88643 5777888776542 4799999999999999888888899999999999999999999999999999
Q ss_pred cCCCceEEEEEecCChHHHHHHHHh---cCCCeEEEeCCCCcccCCceEEEEEEcC---------c--------------
Q psy7557 771 INPNRQTVMTSATWNKDVQRVAKKY---MVNPVKVNVGSLDLAATHTVTQKIIILD---------E-------------- 824 (936)
Q Consensus 771 ~~~~~q~v~~SAT~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~---------~-------------- 824 (936)
++++.|++++|||++.. ..++.++ ...+..+...... ...+.+.+.... .
T Consensus 220 l~~~~~il~LSATi~n~-~e~a~~l~~~~~~~~~vi~~~~r---p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (1010)
T 2xgj_A 220 LPDKVRYVFLSATIPNA-MEFAEWICKIHSQPCHIVYTNFR---PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMA 295 (1010)
T ss_dssp SCTTCEEEEEECCCTTH-HHHHHHHHHHHTSCEEEEEECCC---SSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHH
T ss_pred cCCCCeEEEEcCCCCCH-HHHHHHHHhhcCCCeEEEecCCC---cccceEEEEecCCcceeeeeccccccchHHHHHHHH
Confidence 99999999999999753 4444443 3455555433221 112222222110 0
Q ss_pred --------------------------------chhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCC-----
Q psy7557 825 --------------------------------DEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYR----- 867 (936)
Q Consensus 825 --------------------------------~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~----- 867 (936)
......+...+... ...++||||+++..|+.++..|...++
T Consensus 296 ~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~--~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e 373 (1010)
T 2xgj_A 296 SISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK--KYNPVIVFSFSKRDCEELALKMSKLDFNSDDE 373 (1010)
T ss_dssp TCC------------------------------CHHHHHHHHHHHH--TCCSEEEEESSHHHHHHHHHTTTTSCCCCHHH
T ss_pred HHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCChHH
Confidence 01111233333222 345899999999999999998876432
Q ss_pred ----------------------------------ceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCE
Q psy7557 868 ----------------------------------KSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTH 913 (936)
Q Consensus 868 ----------------------------------~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~ 913 (936)
+++.|||+|++.+|..+++.|++|.++|||||+++++|||+|++++
T Consensus 374 ~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~v 453 (1010)
T 2xgj_A 374 KEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTV 453 (1010)
T ss_dssp HHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEE
T ss_pred HHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceE
Confidence 3788999999999999999999999999999999999999999999
Q ss_pred EEE----ccC----CCChhhhHhhhhhccCC
Q psy7557 914 VIN----YDF----PSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 914 VI~----~d~----p~s~~~yiqr~GRaGR~ 936 (936)
||+ ||. |.+..+|+||+|||||.
T Consensus 454 VI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~ 484 (1010)
T 2xgj_A 454 VFTSVRKWDGQQFRWVSGGEYIQMSGRAGRR 484 (1010)
T ss_dssp EESCSEEECSSCEEECCHHHHHHHHTTBCCT
T ss_pred EEeCCcccCCcCCccCCHHHHhHhhhhcccC
Confidence 999 999 88999999999999995
No 66
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.7e-40 Score=406.73 Aligned_cols=318 Identities=17% Similarity=0.182 Sum_probs=199.1
Q ss_pred hCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHh
Q psy7557 613 NLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK 692 (936)
Q Consensus 613 ~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 692 (936)
.+|+..|+|+|.++++.+++|+|+++++|||||||++|++|++..+.... ...++++||++||++|+.|+.+.+++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~----~~~~~~~Lvl~Pt~~L~~Q~~~~~~~ 318 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP----AGRKAKVVFLATKVPVYEQQKNVFKH 318 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC----SSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc----ccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999988775431 13377899999999999999999998
Q ss_pred cc-CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCC-CCCCceEEEEcccchhccCCCHHHH-HHHhh
Q psy7557 693 ID-YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASI-DLKAVSFVVLDEADRMLDLGFEPQI-NKTSI 769 (936)
Q Consensus 693 ~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~-~~~~i~~lViDEah~l~~~~~~~~~-~~i~~ 769 (936)
+. ..++++..++|+.....+...+..+++|+|+||+++.+.+.+..+ .+.++++|||||||++...+....+ .....
T Consensus 319 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~ 398 (797)
T 4a2q_A 319 HFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (797)
T ss_dssp HHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHH
T ss_pred hcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHH
Confidence 74 348899999999887777777778899999999999999988776 7889999999999999876533332 22222
Q ss_pred h----cCCCceEEEEEecCCh-----------HHHHHHHHhc------------------CCCeEEEeCCCCcccCCc--
Q psy7557 770 Y----INPNRQTVMTSATWNK-----------DVQRVAKKYM------------------VNPVKVNVGSLDLAATHT-- 814 (936)
Q Consensus 770 ~----~~~~~q~v~~SAT~~~-----------~~~~~~~~~~------------------~~~~~i~~~~~~~~~~~~-- 814 (936)
. ..+..|++++|||++. .+..+...+. ..|......... .....
T Consensus 399 ~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~ 477 (797)
T 4a2q_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKR-RIHNPFA 477 (797)
T ss_dssp HHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCC-CSCCHHH
T ss_pred HhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCC-CCCcHHH
Confidence 1 1567899999999852 2222222221 111111100000 00000
Q ss_pred ----------------------e--EEEEEEc------------------------------------------------
Q psy7557 815 ----------------------V--TQKIIIL------------------------------------------------ 822 (936)
Q Consensus 815 ----------------------~--~~~~~~~------------------------------------------------ 822 (936)
+ .+...+.
T Consensus 478 ~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 557 (797)
T 4a2q_A 478 AIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALI 557 (797)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 0 0000000
Q ss_pred ----------------------------------------------------CcchhHHHHHHHHHhc--cCCCCcEEEE
Q psy7557 823 ----------------------------------------------------DEDEKKDWLMEFFDNM--DEERDKVMVF 848 (936)
Q Consensus 823 ----------------------------------------------------~~~~k~~~l~~~l~~~--~~~~~~~iIF 848 (936)
....|...|..++... .....++|||
T Consensus 558 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF 637 (797)
T 4a2q_A 558 ISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLF 637 (797)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEE
T ss_pred hhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEE
Confidence 0123445555555542 1456899999
Q ss_pred cCChHHHHHHHHHHHhc------------CCceEEEeCCCCHHHHHHHHHHhhc-CCCcEEEecccCccCCCCCCCCEEE
Q psy7557 849 MGRKASVSAMSSDLACQ------------YRKSCSLYGDLSQEDREIALEDITS-GYARICVATDVASRGLDVPDLTHVI 915 (936)
Q Consensus 849 ~~s~~~~~~l~~~L~~~------------~~~~~~~h~~l~~~~R~~~~~~F~~-g~~~vLVaT~~~~~Gidip~v~~VI 915 (936)
|+++..++.++..|... |.+...+||+|++.+|..+++.|++ |+++|||||+++++|||+|++++||
T Consensus 638 ~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI 717 (797)
T 4a2q_A 638 AKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVV 717 (797)
T ss_dssp ESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEE
T ss_pred ECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEE
Confidence 99999999999999873 4566678999999999999999999 9999999999999999999999999
Q ss_pred EccCCCChhhhHhhhhhccCC
Q psy7557 916 NYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 916 ~~d~p~s~~~yiqr~GRaGR~ 936 (936)
+||+|.|...|+||+|| ||.
T Consensus 718 ~yd~p~s~~~~iQr~GR-GR~ 737 (797)
T 4a2q_A 718 LYEYSGNVTKMIQVRGR-GRA 737 (797)
T ss_dssp EESCCSCHHHHHTC-------
T ss_pred EeCCCCCHHHHHHhcCC-CCC
Confidence 99999999999999999 994
No 67
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=6.8e-41 Score=397.07 Aligned_cols=311 Identities=19% Similarity=0.191 Sum_probs=215.0
Q ss_pred CCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhcc-CC
Q psy7557 618 TPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID-YK 696 (936)
Q Consensus 618 ~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~-~~ 696 (936)
.|+|+|.++++.+++|+|+++++|||||||++|++|++..+.... ...++++||++||++|+.|+.+.++++. ..
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~----~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP----CGQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC----SSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc----cCCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 799999999999999999999999999999999999998775432 1337789999999999999999999874 45
Q ss_pred CCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCC-CCCCceEEEEcccchhccCCCH-HHHHHHhhhc---
Q psy7557 697 GLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASI-DLKAVSFVVLDEADRMLDLGFE-PQINKTSIYI--- 771 (936)
Q Consensus 697 ~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~-~~~~i~~lViDEah~l~~~~~~-~~~~~i~~~~--- 771 (936)
++++..++|+.....+...+..+++|+|+||+++.+.+..... .+.++++||+||||++.+.+.. ..+.......
T Consensus 80 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~ 159 (555)
T 3tbk_A 80 GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGE 159 (555)
T ss_dssp TCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSS
T ss_pred CcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhcc
Confidence 8899999999877777677777899999999999999988776 7889999999999999877532 2222222221
Q ss_pred --CCCceEEEEEecCChH-----------HHHHHHHhcCCCeEEEeCCCC-----cccCCceEEEEEEc-----------
Q psy7557 772 --NPNRQTVMTSATWNKD-----------VQRVAKKYMVNPVKVNVGSLD-----LAATHTVTQKIIIL----------- 822 (936)
Q Consensus 772 --~~~~q~v~~SAT~~~~-----------~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~----------- 822 (936)
.+..|++++|||++.. +..+...+. .+ .+...... ......... ...+
T Consensus 160 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~-~~-~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~ 236 (555)
T 3tbk_A 160 SRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALD-AS-VIATVRDNVAELEQVVYKPQKI-SRKVASRTSNTFKCI 236 (555)
T ss_dssp CCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTT-CS-EEECCCSCHHHHHTTCCCCCEE-EEECCCCSCCHHHHH
T ss_pred ccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcC-Ce-eeeccccCHHHHHhhcCCCceE-EEEecCcccChHHHH
Confidence 2568999999998542 112222221 11 11110000 000000000 0000
Q ss_pred --------------------------------------------------------------------------------
Q psy7557 823 -------------------------------------------------------------------------------- 822 (936)
Q Consensus 823 -------------------------------------------------------------------------------- 822 (936)
T Consensus 237 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 316 (555)
T 3tbk_A 237 ISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALII 316 (555)
T ss_dssp HHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence
Q ss_pred ---------------------------------------------------CcchhHHHHHHHHHhcc--CCCCcEEEEc
Q psy7557 823 ---------------------------------------------------DEDEKKDWLMEFFDNMD--EERDKVMVFM 849 (936)
Q Consensus 823 ---------------------------------------------------~~~~k~~~l~~~l~~~~--~~~~~~iIF~ 849 (936)
....|...+.+++.... ....++||||
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~ 396 (555)
T 3tbk_A 317 SEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFV 396 (555)
T ss_dssp HHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred hhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEe
Confidence 01334555555555431 3458999999
Q ss_pred CChHHHHHHHHHHHhcC------------CceEEEeCCCCHHHHHHHHHHhhc-CCCcEEEecccCccCCCCCCCCEEEE
Q psy7557 850 GRKASVSAMSSDLACQY------------RKSCSLYGDLSQEDREIALEDITS-GYARICVATDVASRGLDVPDLTHVIN 916 (936)
Q Consensus 850 ~s~~~~~~l~~~L~~~~------------~~~~~~h~~l~~~~R~~~~~~F~~-g~~~vLVaT~~~~~Gidip~v~~VI~ 916 (936)
+++..++.++..|...+ .+...+||+|++++|..+++.|++ |+++|||||+++++|||+|++++||+
T Consensus 397 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~ 476 (555)
T 3tbk_A 397 KTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVIL 476 (555)
T ss_dssp SSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEE
T ss_pred CcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEE
Confidence 99999999999998763 344556779999999999999999 99999999999999999999999999
Q ss_pred ccCCCChhhhHhhhhhccCC
Q psy7557 917 YDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 917 ~d~p~s~~~yiqr~GRaGR~ 936 (936)
||+|.|+.+|+||+|| ||.
T Consensus 477 ~d~p~s~~~~~Qr~GR-gR~ 495 (555)
T 3tbk_A 477 YEYVGNVIKMIQTRGR-GRA 495 (555)
T ss_dssp ESCCSSCCCEECSSCC-CTT
T ss_pred eCCCCCHHHHHHhcCc-CcC
Confidence 9999999999999999 884
No 68
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=7.6e-42 Score=415.83 Aligned_cols=325 Identities=20% Similarity=0.248 Sum_probs=227.4
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHH-HHHHHhccCC
Q psy7557 98 TPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQI-EREVNKIDYK 176 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~-~~~~~~~~~~ 176 (936)
+|+|+|.++++.+++|+|+++++|||+|||++|++|++..+..... ...++++||++|+++|+.|+ .+.++++...
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~---~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK---ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH---HTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc---cCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 7999999999999999999999999999999999999877643210 12336899999999999999 9999997665
Q ss_pred CCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHH------HcCCcCCCCceEEEEccchhhhcCCCH-HHHHHHHh
Q psy7557 177 GLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFV------SRASIDLKAVSFVVLDEADRMLDLGFE-PQINKTSI 249 (936)
Q Consensus 177 ~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l------~~~~~~~~~~~~lViDEah~l~~~~~~-~~~~~i~~ 249 (936)
++++..++|+.........+..+++|+|+||++|.+.+ ....+.+.++++|||||||++...++. ..+.....
T Consensus 84 ~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~ 163 (699)
T 4gl2_A 84 WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLM 163 (699)
T ss_dssp TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHH
T ss_pred CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHH
Confidence 68999999998877766677778999999999999888 445577889999999999998654422 22222221
Q ss_pred h----c---------CCCCcEEEEEeccchH-----------HHHHHHHhcCCCEEEEeCC-CCc--ccCCceEEEEEEe
Q psy7557 250 Y----I---------NPNRQTVMTSATWNKD-----------VQRVAKKYMVNPVKVNVGS-LDL--AATHTVTQKIIIL 302 (936)
Q Consensus 250 ~----~---------~~~~q~~~~SAT~~~~-----------~~~~~~~~~~~~~~i~~~~-~~~--~~~~~~~~~~~~~ 302 (936)
. . .+.++++++|||++.. +..+...+....+...... ... ....... .+..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~-~~~~~ 242 (699)
T 4gl2_A 164 QKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCK-KFAIA 242 (699)
T ss_dssp HHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEE-EEEEE
T ss_pred hhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCce-EEEEc
Confidence 1 1 1678999999999862 2222222211000000000 000 0000000 00000
Q ss_pred C-------------------------------------------------------------------------------
Q psy7557 303 D------------------------------------------------------------------------------- 303 (936)
Q Consensus 303 ~------------------------------------------------------------------------------- 303 (936)
.
T Consensus 243 ~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 322 (699)
T 4gl2_A 243 DATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDA 322 (699)
T ss_dssp C-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0
Q ss_pred --------------------------------------------------------chhhHHHHHHHHHhcc--CC-CCc
Q psy7557 304 --------------------------------------------------------EDEKKDWLMEFFDNMD--EE-RDK 324 (936)
Q Consensus 304 --------------------------------------------------------~~~k~~~l~~~l~~~~--~~-~~~ 324 (936)
...|...|.+++.... .. ..+
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~ 402 (699)
T 4gl2_A 323 YTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESAR 402 (699)
T ss_dssp HHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 0011112222222210 12 689
Q ss_pred EEEEeCchHHHHHHHHHhhhc------CCceeeecCC--------CCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCC
Q psy7557 325 VMVFMGRKASVSAMSSDLACQ------YRKSCSLYGD--------LSQEDREIALEDITSGYARICVATDVASRGLDVPD 390 (936)
Q Consensus 325 ~iVF~~~~~~~~~l~~~L~~~------~~~~~~~h~~--------~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~ 390 (936)
+||||+++..++.+++.|... |+++..+||+ |++.+|..+++.|++|+++|||||+++++|||+|+
T Consensus 403 ~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~ 482 (699)
T 4gl2_A 403 GIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKE 482 (699)
T ss_dssp EEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCS
T ss_pred EEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCcccc
Confidence 999999999999999999987 8999999999 99999999999999999999999999999999999
Q ss_pred CcEEEEecCCCCccccccCCCCcccCCCceeEEEEeccc
Q psy7557 391 LTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRK 429 (936)
Q Consensus 391 v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~ 429 (936)
+++||+||+|.|+.+|+||+|||||.| .+++++...
T Consensus 483 v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~~ 518 (699)
T 4gl2_A 483 CNIVIRYGLVTNEIAMVQARGRARADE---STYVLVAHS 518 (699)
T ss_dssp CCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEES
T ss_pred CCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEeC
Confidence 999999999999999999999987665 445555443
No 69
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=9e-40 Score=381.12 Aligned_cols=324 Identities=23% Similarity=0.287 Sum_probs=252.6
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhcc-CC
Q psy7557 98 TPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID-YK 176 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~-~~ 176 (936)
.|+|+|.++++.++.+ ++++++|||+|||++++++++..+. ..+.++||++|+++|+.|+.++++++. ..
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~--------~~~~~~liv~P~~~L~~q~~~~~~~~~~~~ 79 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT--------KYGGKVLMLAPTKPLVLQHAESFRRLFNLP 79 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH--------HSCSCEEEECSSHHHHHHHHHHHHHHBCSC
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh--------cCCCeEEEEECCHHHHHHHHHHHHHHhCcc
Confidence 7999999999999998 9999999999999999999887653 235689999999999999999999964 34
Q ss_pred CCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHHHhhcCCCCc
Q psy7557 177 GLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQ 256 (936)
Q Consensus 177 ~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q 256 (936)
+.++..++|+...... .....+++|+|+||+++...+..+.+.+.+++++|+||||++.+.+....+........+..+
T Consensus 80 ~~~v~~~~g~~~~~~~-~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~ 158 (494)
T 1wp9_A 80 PEKIVALTGEKSPEER-SKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPL 158 (494)
T ss_dssp GGGEEEECSCSCHHHH-HHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCC
T ss_pred hhheEEeeCCcchhhh-hhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCe
Confidence 5578888887765543 333446899999999999998888888899999999999999876555555555555677889
Q ss_pred EEEEEeccchH---HHHHHHHhcCCCEEEEeCCCCcc----cCCceEEEEEEe---------------------------
Q psy7557 257 TVMTSATWNKD---VQRVAKKYMVNPVKVNVGSLDLA----ATHTVTQKIIIL--------------------------- 302 (936)
Q Consensus 257 ~~~~SAT~~~~---~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~--------------------------- 302 (936)
++++|||++.+ +..+...+............... ............
T Consensus 159 ~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (494)
T 1wp9_A 159 VIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGL 238 (494)
T ss_dssp EEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred EEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999743 34444444332222211110000 000000000000
Q ss_pred --------------------------------------------------------------------------------
Q psy7557 303 -------------------------------------------------------------------------------- 302 (936)
Q Consensus 303 -------------------------------------------------------------------------------- 302 (936)
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 318 (494)
T 1wp9_A 239 LESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKE 318 (494)
T ss_dssp SSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred ccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhh
Confidence
Q ss_pred ---------------------CchhhHHHHHHHHHhcc--CCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecC-----
Q psy7557 303 ---------------------DEDEKKDWLMEFFDNMD--EERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYG----- 354 (936)
Q Consensus 303 ---------------------~~~~k~~~l~~~l~~~~--~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~----- 354 (936)
....|...+.+++.... ..+.++||||+++..++.+++.|...++.+..+||
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~ 398 (494)
T 1wp9_A 319 IFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKE 398 (494)
T ss_dssp HHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEecccccc
Confidence 12234555566665532 45789999999999999999999999999999999
Q ss_pred ---CCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccCh
Q psy7557 355 ---DLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDW 431 (936)
Q Consensus 355 ---~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~ 431 (936)
+|++.+|..+++.|++|..+|||||+++++|+|+|++++||+||+|.++..|+||+||+||.|. |.++.|+++++.
T Consensus 399 ~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ 477 (494)
T 1wp9_A 399 NDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTR 477 (494)
T ss_dssp ------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSH
T ss_pred ccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999998 999999998865
Q ss_pred h
Q psy7557 432 S 432 (936)
Q Consensus 432 ~ 432 (936)
+
T Consensus 478 e 478 (494)
T 1wp9_A 478 D 478 (494)
T ss_dssp H
T ss_pred H
Confidence 4
No 70
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=5.9e-41 Score=417.31 Aligned_cols=282 Identities=17% Similarity=0.222 Sum_probs=219.7
Q ss_pred HHHHHH-hCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHH
Q psy7557 607 ILRQLE-NLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQ 685 (936)
Q Consensus 607 ~~~~l~-~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q 685 (936)
+.+.+. .+||. | |+|.++|+.+++|+|++++||||||||+ |.+|++..+.. .++++||++||++||.|
T Consensus 46 ~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~--------~~~~~lil~PtreLa~Q 114 (1054)
T 1gku_B 46 FVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL--------KGKRCYVIFPTSLLVIQ 114 (1054)
T ss_dssp HHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT--------TSCCEEEEESCHHHHHH
T ss_pred HHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh--------cCCeEEEEeccHHHHHH
Confidence 334443 48998 9 9999999999999999999999999998 88898877642 46799999999999999
Q ss_pred HHHHHHhcc-CCCC----EEEEEECCccchHH---HHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhcc
Q psy7557 686 IEREVNKID-YKGL----KAVCVYGGKELEPQ---LEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLD 757 (936)
Q Consensus 686 ~~~~~~~~~-~~~~----~~~~~~gg~~~~~~---~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~ 757 (936)
+.+.++++. ..++ ++..++||.+...+ ...+.+ ++|+|+||++|.+++.+ ++++++|||||||+|++
T Consensus 115 ~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~ 189 (1054)
T 1gku_B 115 AAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK 189 (1054)
T ss_dssp HHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT
T ss_pred HHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh
Confidence 999999874 4466 88999999887763 344555 99999999999987664 67999999999999998
Q ss_pred CCCHHHHHHHhhhc-----------CCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcch
Q psy7557 758 LGFEPQINKTSIYI-----------NPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDE 826 (936)
Q Consensus 758 ~~~~~~~~~i~~~~-----------~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 826 (936)
+...+..+...+ +...|++++|||++.. ..+...++.++..+.+.... .....+.+.+. ...
T Consensus 190 --~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~-~~~~~i~~~~~---~~~ 262 (1054)
T 1gku_B 190 --ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSR-ITVRNVEDVAV---NDE 262 (1054)
T ss_dssp --STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCE-ECCCCEEEEEE---SCC
T ss_pred --ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcc-cCcCCceEEEe---chh
Confidence 456666665554 3568999999999877 54444444333333332222 12233444443 345
Q ss_pred hHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEe----cccC
Q psy7557 827 KKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVA----TDVA 902 (936)
Q Consensus 827 k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVa----T~~~ 902 (936)
+...+..++... .+++||||+++..|+.++..|... +.+..+||+| ..+++.|++|+.+|||| |+++
T Consensus 263 k~~~L~~ll~~~---~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~ 333 (1054)
T 1gku_B 263 SISTLSSILEKL---GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTL 333 (1054)
T ss_dssp CTTTTHHHHTTS---CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC-----
T ss_pred HHHHHHHHHhhc---CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCee
Confidence 566677777654 478999999999999999999888 8999999998 37889999999999999 9999
Q ss_pred ccCCCCCCC-CEEEEccCC
Q psy7557 903 SRGLDVPDL-THVINYDFP 920 (936)
Q Consensus 903 ~~Gidip~v-~~VI~~d~p 920 (936)
++|||+|+| ++||+||+|
T Consensus 334 ~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 334 VRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp -CCSCCTTTCCEEEEESCC
T ss_pred EeccccCCcccEEEEeCCC
Confidence 999999995 999999999
No 71
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=2.5e-40 Score=382.99 Aligned_cols=306 Identities=19% Similarity=0.201 Sum_probs=219.6
Q ss_pred CCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc
Q psy7557 614 LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693 (936)
Q Consensus 614 ~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 693 (936)
+|. .|+|+|..++|.++.|+ ++.++||||||++|.+|++.... .++.++|++||++||.|+++.+..+
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l---------~g~~vlVltPTreLA~Q~~e~~~~l 138 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL---------TGKGVHVVTVNDYLAQRDAENNRPL 138 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT---------TSSCCEEEESSHHHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH---------cCCcEEEEcCCHHHHHHHHHHHHHH
Confidence 676 99999999999999998 99999999999999999986542 3568999999999999999999987
Q ss_pred -cCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHH-HHHHHcCC------CCCCCceEEEEcccchhc-cCC-----
Q psy7557 694 -DYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRL-NDFVSRAS------IDLKAVSFVVLDEADRML-DLG----- 759 (936)
Q Consensus 694 -~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l-~~~l~~~~------~~~~~i~~lViDEah~l~-~~~----- 759 (936)
...++++.+++||.+.. ...+..+++|+||||++| .++++.+. ..++++.++|+||||+|+ +.+
T Consensus 139 ~~~lgl~v~~i~GG~~~~--~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLI 216 (853)
T 2fsf_A 139 FEFLGLTVGINLPGMPAP--AKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLI 216 (853)
T ss_dssp HHHTTCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEE
T ss_pred HHhcCCeEEEEeCCCCHH--HHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCccccc
Confidence 36789999999998753 345556799999999999 68777542 567899999999999998 543
Q ss_pred ----------CHHHHHHHhhhcCC--------------------CceEE------------------------EEEecCC
Q psy7557 760 ----------FEPQINKTSIYINP--------------------NRQTV------------------------MTSATWN 785 (936)
Q Consensus 760 ----------~~~~~~~i~~~~~~--------------------~~q~v------------------------~~SAT~~ 785 (936)
|...+..+...+++ .+|++ ++|||.+
T Consensus 217 iSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~ 296 (853)
T 2fsf_A 217 ISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANI 296 (853)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred ccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccc
Confidence 56677777777753 45654 8999976
Q ss_pred hHHHHH-----HHHhcC--------CC-----------------------------eEEEeCCCCcccCCceE-------
Q psy7557 786 KDVQRV-----AKKYMV--------NP-----------------------------VKVNVGSLDLAATHTVT------- 816 (936)
Q Consensus 786 ~~~~~~-----~~~~~~--------~~-----------------------------~~i~~~~~~~~~~~~~~------- 816 (936)
.....+ +..++. ++ ..+.+...... ...+.
T Consensus 297 ~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~t-la~It~qnyfr~ 375 (853)
T 2fsf_A 297 MLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQT-LASITFQNYFRL 375 (853)
T ss_dssp ------------------------------------------------------------CCCCCEE-EEEEEHHHHHTT
T ss_pred hHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccc-cceeehHHHHhh
Confidence 422211 111110 00 11111110000 00001
Q ss_pred ----------------------------------------EEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHHHH
Q psy7557 817 ----------------------------------------QKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVS 856 (936)
Q Consensus 817 ----------------------------------------~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~ 856 (936)
+.++++....|...+...+......+.|+||||+|+..++
T Consensus 376 Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se 455 (853)
T 2fsf_A 376 YEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSE 455 (853)
T ss_dssp SSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHH
T ss_pred hhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHH
Confidence 1235667788888898888765456779999999999999
Q ss_pred HHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCC-------------------------
Q psy7557 857 AMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDL------------------------- 911 (936)
Q Consensus 857 ~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v------------------------- 911 (936)
.++..|...|+++..+||++.+.+|..+.+.|+.| .|+|||++++||+||+..
T Consensus 456 ~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~ 533 (853)
T 2fsf_A 456 LVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADW 533 (853)
T ss_dssp HHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHh
Confidence 99999999999999999999999998899999988 699999999999999974
Q ss_pred ------------CEEEEccCCCChhhhHhhhhhccCC
Q psy7557 912 ------------THVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 912 ------------~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
.+||+|+.|.|...|+||+|||||+
T Consensus 534 ~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRq 570 (853)
T 2fsf_A 534 QVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQ 570 (853)
T ss_dssp HHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGG
T ss_pred hhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccC
Confidence 6999999999999999999999995
No 72
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2.2e-39 Score=399.28 Aligned_cols=299 Identities=18% Similarity=0.184 Sum_probs=237.6
Q ss_pred hCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHh
Q psy7557 613 NLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK 692 (936)
Q Consensus 613 ~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 692 (936)
.++| .|+|+|.++++.+++|+|++++||||||||++|++|+.... ..++++||++|+++|+.|+++.+++
T Consensus 35 ~~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~---------~~g~~vlvl~PtraLa~Q~~~~l~~ 104 (997)
T 4a4z_A 35 SWPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAH---------RNMTKTIYTSPIKALSNQKFRDFKE 104 (997)
T ss_dssp CCSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHH---------HTTCEEEEEESCGGGHHHHHHHHHT
T ss_pred hCCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHH---------hcCCeEEEEeCCHHHHHHHHHHHHH
Confidence 4677 69999999999999999999999999999999999887654 3467999999999999999999998
Q ss_pred ccCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHHHhhhcC
Q psy7557 693 IDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYIN 772 (936)
Q Consensus 693 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~~ 772 (936)
+. .++++..++|+..... .++|+|+||++|.+++......++++++|||||||++.++++...+..+...++
T Consensus 105 ~~-~~~~v~~l~G~~~~~~-------~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~ 176 (997)
T 4a4z_A 105 TF-DDVNIGLITGDVQINP-------DANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLP 176 (997)
T ss_dssp TC---CCEEEECSSCEECT-------TSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSC
T ss_pred Hc-CCCeEEEEeCCCccCC-------CCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcc
Confidence 63 3678889999876543 379999999999999988877889999999999999999999999999999999
Q ss_pred CCceEEEEEecCChHHHHHHHHhcC---CCeEEEeCCCCcccCCceEEEE------------------------------
Q psy7557 773 PNRQTVMTSATWNKDVQRVAKKYMV---NPVKVNVGSLDLAATHTVTQKI------------------------------ 819 (936)
Q Consensus 773 ~~~q~v~~SAT~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~------------------------------ 819 (936)
++.|++++|||++.. ..++.++.. .+..+...... ...+.+.+
T Consensus 177 ~~v~iIlLSAT~~n~-~ef~~~l~~~~~~~~~vi~~~~r---~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 252 (997)
T 4a4z_A 177 QHVKFILLSATVPNT-YEFANWIGRTKQKNIYVISTPKR---PVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNG 252 (997)
T ss_dssp TTCEEEEEECCCTTH-HHHHHHHHHHHTCCEEEEECSSC---SSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-
T ss_pred cCCCEEEEcCCCCCh-HHHHHHHhcccCCceEEEecCCC---CccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhc
Confidence 999999999999754 356555431 22222211110 00011100
Q ss_pred ---------------------------------------------------------------EEcCcchhHHHHHHHHH
Q psy7557 820 ---------------------------------------------------------------IILDEDEKKDWLMEFFD 836 (936)
Q Consensus 820 ---------------------------------------------------------------~~~~~~~k~~~l~~~l~ 836 (936)
.......+...+...+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~ 332 (997)
T 4a4z_A 253 ESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLR 332 (997)
T ss_dssp ----------------------------------------------------------------CCCCTTHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHH
Confidence 00112223444555555
Q ss_pred hccCCCCcEEEEcCChHHHHHHHHHHHhcCC---------------------------------------ceEEEeCCCC
Q psy7557 837 NMDEERDKVMVFMGRKASVSAMSSDLACQYR---------------------------------------KSCSLYGDLS 877 (936)
Q Consensus 837 ~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~---------------------------------------~~~~~h~~l~ 877 (936)
.. ...++||||++++.|+.++..|...++ ++..+||+|+
T Consensus 333 ~~--~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~ 410 (997)
T 4a4z_A 333 KR--ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLL 410 (997)
T ss_dssp HT--TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSC
T ss_pred hC--CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCC
Confidence 43 457899999999999999999976544 5789999999
Q ss_pred HHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEEccCCC---------ChhhhHhhhhhccCC
Q psy7557 878 QEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPS---------HIEEYVHRVGRTGEF 936 (936)
Q Consensus 878 ~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~p~---------s~~~yiqr~GRaGR~ 936 (936)
+.+|..+++.|++|.++|||||+++++|||+|+ ..||+++.|. |..+|+||+|||||.
T Consensus 411 ~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~ 477 (997)
T 4a4z_A 411 PIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRR 477 (997)
T ss_dssp HHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCT
T ss_pred HHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccC
Confidence 999999999999999999999999999999999 5555555554 999999999999994
No 73
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=2e-41 Score=397.41 Aligned_cols=320 Identities=14% Similarity=0.097 Sum_probs=238.3
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHH
Q psy7557 83 HYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTREL 162 (936)
Q Consensus 83 ~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~L 162 (936)
+++.+++.+... +..|+|+|.++++.+++|+|++++||||||||++|++|++..+.. .++++||++|||+|
T Consensus 157 ~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~--------~~~~vLvl~PtreL 227 (618)
T 2whx_A 157 KSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK--------RRLRTLILAPTRVV 227 (618)
T ss_dssp -----CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------TTCCEEEEESSHHH
T ss_pred chHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh--------CCCeEEEEcChHHH
Confidence 444444444433 578999999999999999999999999999999999999988753 36789999999999
Q ss_pred HHHHHHHHHhccCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHH
Q psy7557 163 ATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEP 242 (936)
Q Consensus 163 a~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~ 242 (936)
|.|+++.++.+ .+. ..++ ... .....+..+.++|.+.+...+... ..++++++|||||||++ +.+|..
T Consensus 228 a~Qi~~~l~~~-----~v~-~~~~-~l~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~ 295 (618)
T 2whx_A 228 AAEMEEALRGL-----PIR-YQTP-AVK---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVA 295 (618)
T ss_dssp HHHHHHHTTTS-----CEE-ECCT-TSS---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHHHH
T ss_pred HHHHHHHhcCC-----cee-Eecc-cce---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccHHH
Confidence 99999888742 222 1111 100 001112345566666665544433 35889999999999998 777888
Q ss_pred HHHHHHhhcC-CCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhccCC
Q psy7557 243 QINKTSIYIN-PNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEE 321 (936)
Q Consensus 243 ~~~~i~~~~~-~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~ 321 (936)
.+..+...++ +++|+++||||++..+..++. .++..+.+.... .. .+...+...+.. .
T Consensus 296 ~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~--------------~~-~~~~~ll~~l~~---~ 354 (618)
T 2whx_A 296 ARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI--------------PE-RSWNTGFDWITD---Y 354 (618)
T ss_dssp HHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCC--------------CS-SCCSSSCHHHHH---C
T ss_pred HHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccC--------------CH-HHHHHHHHHHHh---C
Confidence 8888877765 789999999999876543222 133222221110 00 111112223333 3
Q ss_pred CCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEE-------
Q psy7557 322 RDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHV------- 394 (936)
Q Consensus 322 ~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~V------- 394 (936)
.+++||||++++.++.+++.|...+..+..+||+ +|..+++.|++|+.+|||||+++++|||+| +++|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~ 429 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCL 429 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECccee
Confidence 6799999999999999999999999999999985 788899999999999999999999999998 9988
Q ss_pred -------------EEecCCCCccccccCCCCcccCCC-ceeEEEEec---ccChhhHHhHHHHHhhcCCccc
Q psy7557 395 -------------INYDFPSHIEEYVHRVGRTGRAGK-SGESITLMT---RKDWSHAHEIIPILEEGGHESY 449 (936)
Q Consensus 395 -------------I~~d~p~s~~~y~qr~GRagR~g~-~g~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~ 449 (936)
|+||.|.+.++|+||+|||||.|. .|.|++|++ +.|...+..+.+.+...+.+++
T Consensus 430 ~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~~~~~~ 501 (618)
T 2whx_A 430 KPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTP 501 (618)
T ss_dssp EEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCT
T ss_pred cceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhccccccCC
Confidence 888889999999999999999965 899999998 7788888888877755544443
No 74
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=2.4e-39 Score=400.03 Aligned_cols=318 Identities=17% Similarity=0.189 Sum_probs=198.6
Q ss_pred hCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHh
Q psy7557 613 NLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK 692 (936)
Q Consensus 613 ~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 692 (936)
-.|+..|+|+|.++++.+++|+|+++++|||||||++|++|++..+.... ...++++|||+||++|+.|+.+.+++
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~----~~~~~~vLvl~Pt~~L~~Q~~~~~~~ 318 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP----AGRKAKVVFLATKVPVYEQQKNVFKH 318 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC----SSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc----ccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 34778999999999999999999999999999999999999987664321 12367899999999999999999999
Q ss_pred cc-CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCC-CCCCceEEEEcccchhccCCCHHH-HHHHhh
Q psy7557 693 ID-YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASI-DLKAVSFVVLDEADRMLDLGFEPQ-INKTSI 769 (936)
Q Consensus 693 ~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~-~~~~i~~lViDEah~l~~~~~~~~-~~~i~~ 769 (936)
+. ..++++..++|+.....+...+..+++|+|+||++|.+.+.+..+ .+.++++||+||||++...+.... +.....
T Consensus 319 ~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~ 398 (936)
T 4a2w_A 319 HFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (936)
T ss_dssp HHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHH
T ss_pred HhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHH
Confidence 74 358999999999877666666667799999999999999988766 688999999999999987653222 222222
Q ss_pred h----cCCCceEEEEEecCCh-----------HHHHHHHHh------------------cCCCeEEEeCCCCcccCCc--
Q psy7557 770 Y----INPNRQTVMTSATWNK-----------DVQRVAKKY------------------MVNPVKVNVGSLDLAATHT-- 814 (936)
Q Consensus 770 ~----~~~~~q~v~~SAT~~~-----------~~~~~~~~~------------------~~~~~~i~~~~~~~~~~~~-- 814 (936)
. ..+..|++++|||+.. .+..+...+ ...|......... .....
T Consensus 399 ~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~-~~~~~~~ 477 (936)
T 4a2w_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKR-RIHNPFA 477 (936)
T ss_dssp HHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCC-CSCCHHH
T ss_pred HhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEeccc-ccCcHHH
Confidence 2 1566899999999852 122222111 1222211110000 00000
Q ss_pred ----------------------e--EEEEEEc------------------------------------------------
Q psy7557 815 ----------------------V--TQKIIIL------------------------------------------------ 822 (936)
Q Consensus 815 ----------------------~--~~~~~~~------------------------------------------------ 822 (936)
+ .....+.
T Consensus 478 ~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~ 557 (936)
T 4a2w_A 478 AIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALI 557 (936)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 0 0000000
Q ss_pred ----------------------------------------------------CcchhHHHHHHHHHhcc--CCCCcEEEE
Q psy7557 823 ----------------------------------------------------DEDEKKDWLMEFFDNMD--EERDKVMVF 848 (936)
Q Consensus 823 ----------------------------------------------------~~~~k~~~l~~~l~~~~--~~~~~~iIF 848 (936)
....|...|.+++.... ....++|||
T Consensus 558 i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF 637 (936)
T 4a2w_A 558 ISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLF 637 (936)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEE
T ss_pred hhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEE
Confidence 01234445555555532 346899999
Q ss_pred cCChHHHHHHHHHHHhc------------CCceEEEeCCCCHHHHHHHHHHhhc-CCCcEEEecccCccCCCCCCCCEEE
Q psy7557 849 MGRKASVSAMSSDLACQ------------YRKSCSLYGDLSQEDREIALEDITS-GYARICVATDVASRGLDVPDLTHVI 915 (936)
Q Consensus 849 ~~s~~~~~~l~~~L~~~------------~~~~~~~h~~l~~~~R~~~~~~F~~-g~~~vLVaT~~~~~Gidip~v~~VI 915 (936)
|+++..++.++..|... |.....+||+|++.+|..+++.|++ |+++|||||+++++|||+|++++||
T Consensus 638 ~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI 717 (936)
T 4a2w_A 638 AKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVV 717 (936)
T ss_dssp ESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEE
T ss_pred eCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEE
Confidence 99999999999999976 4556677999999999999999999 9999999999999999999999999
Q ss_pred EccCCCChhhhHhhhhhccCC
Q psy7557 916 NYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 916 ~~d~p~s~~~yiqr~GRaGR~ 936 (936)
+||+|.|..+|+||+|| ||.
T Consensus 718 ~yD~p~s~~~~iQr~GR-GR~ 737 (936)
T 4a2w_A 718 LYEYSGNVTKMIQVRGR-GRA 737 (936)
T ss_dssp EESCCSCSHHHHCC-------
T ss_pred EeCCCCCHHHHHHhcCC-CCC
Confidence 99999999999999999 994
No 75
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2e-40 Score=403.22 Aligned_cols=315 Identities=20% Similarity=0.235 Sum_probs=222.9
Q ss_pred CCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHH-HHHHHhccCC
Q psy7557 618 TPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQI-EREVNKIDYK 696 (936)
Q Consensus 618 ~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~-~~~~~~~~~~ 696 (936)
.|+|+|.++++.+++|+|+++.+|||+|||++|++|++..+..... ...++++||++|+++|+.|+ .+.++++...
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~---~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK---ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH---HTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc---cCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 7999999999999999999999999999999999999877643210 12347899999999999999 9999998766
Q ss_pred CCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHH------HcCCCCCCCceEEEEcccchhccCCCH-HHHHHHhh
Q psy7557 697 GLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFV------SRASIDLKAVSFVVLDEADRMLDLGFE-PQINKTSI 769 (936)
Q Consensus 697 ~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l------~~~~~~~~~i~~lViDEah~l~~~~~~-~~~~~i~~ 769 (936)
++++..++|+.........+..+++|+|+||++|.+.+ ....+.+.++++|||||||++...++. ..+.....
T Consensus 84 ~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~ 163 (699)
T 4gl2_A 84 WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLM 163 (699)
T ss_dssp TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHH
T ss_pred CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHH
Confidence 68999999998877666677778999999999999888 444567889999999999998765433 22222221
Q ss_pred h----c---------CCCceEEEEEecCChH-----------HHHHHHHhcCCCeEEEeCC-CCc--ccCCceEEEEEEc
Q psy7557 770 Y----I---------NPNRQTVMTSATWNKD-----------VQRVAKKYMVNPVKVNVGS-LDL--AATHTVTQKIIIL 822 (936)
Q Consensus 770 ~----~---------~~~~q~v~~SAT~~~~-----------~~~~~~~~~~~~~~i~~~~-~~~--~~~~~~~~~~~~~ 822 (936)
. . .+..|++++|||++.. +..+...+....+...... ... .............
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~ 243 (699)
T 4gl2_A 164 QKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIAD 243 (699)
T ss_dssp HHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC
T ss_pred hhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcc
Confidence 1 1 1677999999999862 2222222221000000000 000 0000000000000
Q ss_pred C-------------------------------------------------------------------------------
Q psy7557 823 D------------------------------------------------------------------------------- 823 (936)
Q Consensus 823 ~------------------------------------------------------------------------------- 823 (936)
.
T Consensus 244 ~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 323 (699)
T 4gl2_A 244 ATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAY 323 (699)
T ss_dssp -----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0
Q ss_pred -------------------------------------------------------cchhHHHHHHHHHhcc--CC-CCcE
Q psy7557 824 -------------------------------------------------------EDEKKDWLMEFFDNMD--EE-RDKV 845 (936)
Q Consensus 824 -------------------------------------------------------~~~k~~~l~~~l~~~~--~~-~~~~ 845 (936)
...|...|..++.... .. ..++
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~ 403 (699)
T 4gl2_A 324 THLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARG 403 (699)
T ss_dssp HHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCE
T ss_pred HHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcE
Confidence 0011112222222211 12 6899
Q ss_pred EEEcCChHHHHHHHHHHHhc------CCceEEEeCC--------CCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCC
Q psy7557 846 MVFMGRKASVSAMSSDLACQ------YRKSCSLYGD--------LSQEDREIALEDITSGYARICVATDVASRGLDVPDL 911 (936)
Q Consensus 846 iIF~~s~~~~~~l~~~L~~~------~~~~~~~h~~--------l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v 911 (936)
||||+++..++.++..|... ++.+..+||+ |++.+|..+++.|++|+++|||||+++++|||+|++
T Consensus 404 IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v 483 (699)
T 4gl2_A 404 IIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKEC 483 (699)
T ss_dssp EEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSC
T ss_pred EEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccC
Confidence 99999999999999999987 8899999999 999999999999999999999999999999999999
Q ss_pred CEEEEccCCCChhhhHhhhhhccC
Q psy7557 912 THVINYDFPSHIEEYVHRVGRTGE 935 (936)
Q Consensus 912 ~~VI~~d~p~s~~~yiqr~GRaGR 935 (936)
++||+||+|.|..+|+||+|||||
T Consensus 484 ~~VI~~d~p~s~~~~~Qr~GRArr 507 (699)
T 4gl2_A 484 NIVIRYGLVTNEIAMVQARGRARA 507 (699)
T ss_dssp CCCEEESCCCCHHHHHHHHTTSCS
T ss_pred CEEEEeCCCCCHHHHHHHcCCCCC
Confidence 999999999999999999999887
No 76
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=4.3e-40 Score=375.62 Aligned_cols=288 Identities=14% Similarity=0.104 Sum_probs=217.4
Q ss_pred CCCCCcHHHHHHHHHHhcCCcE-EEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhc
Q psy7557 95 SFTTPSPIQAQAWPILMSGHDM-IGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 173 (936)
Q Consensus 95 g~~~~~~~Q~~ai~~~~~g~d~-l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 173 (936)
|+..|+|+|. +||.+++|+|+ +++||||||||++|++|++.+... .++++||++||++||.|+++.+..+
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~--------~~~~~lvl~Ptr~La~Q~~~~l~g~ 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL--------RRLRTLILAPTRVVAAEMEEALRGL 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTTS
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh--------cCCcEEEECCCHHHHHHHHHHhcCc
Confidence 7889999985 79999999887 888999999999999999877643 3678999999999999999988642
Q ss_pred cCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHHHh-hcC
Q psy7557 174 DYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSI-YIN 252 (936)
Q Consensus 174 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~-~~~ 252 (936)
.+....+.... ....+..|.++|++.+.+.+.+. ..++++++|||||||++ +.++......+.. ...
T Consensus 72 -----~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~ 139 (451)
T 2jlq_A 72 -----PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEM 139 (451)
T ss_dssp -----CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHT
T ss_pred -----eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcC
Confidence 23221111111 11234679999999998777654 45889999999999987 4433333333322 235
Q ss_pred CCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCch
Q psy7557 253 PNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRK 332 (936)
Q Consensus 253 ~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~ 332 (936)
++.|+++||||+|.....+ +..++..+..... .+... + .. +...+.. ..+++||||+++
T Consensus 140 ~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~---~p~~~---~-----~~----~~~~l~~---~~~~~lVF~~s~ 198 (451)
T 2jlq_A 140 GEAAAIFMTATPPGSTDPF---PQSNSPIEDIERE---IPERS---W-----NT----GFDWITD---YQGKTVWFVPSI 198 (451)
T ss_dssp TSCEEEEECSSCTTCCCSS---CCCSSCEEEEECC---CCSSC---C-----SS----SCHHHHH---CCSCEEEECSSH
T ss_pred CCceEEEEccCCCccchhh---hcCCCceEecCcc---CCchh---h-----HH----HHHHHHh---CCCCEEEEcCCH
Confidence 6899999999998754322 2233333322210 00000 0 00 1222333 356999999999
Q ss_pred HHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEec--------------
Q psy7557 333 ASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYD-------------- 398 (936)
Q Consensus 333 ~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d-------------- 398 (936)
+.++.+++.|...++.+..+||++. ..+++.|++|+.+|||||+++++|||+|+ ++|||||
T Consensus 199 ~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~ 273 (451)
T 2jlq_A 199 KAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPER 273 (451)
T ss_dssp HHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCE
T ss_pred HHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccce
Confidence 9999999999999999999999764 57999999999999999999999999999 9999999
Q ss_pred ------CCCCccccccCCCCcccCCC-ceeEEEEeccc
Q psy7557 399 ------FPSHIEEYVHRVGRTGRAGK-SGESITLMTRK 429 (936)
Q Consensus 399 ------~p~s~~~y~qr~GRagR~g~-~g~~~~~~~~~ 429 (936)
.|.+..+|+||+|||||.|. .|.+++|+..+
T Consensus 274 l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~ 311 (451)
T 2jlq_A 274 VILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDP 311 (451)
T ss_dssp EEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred eeecccccCCHHHHHHhccccCCCCCCCccEEEEeCCc
Confidence 99999999999999999998 78998887543
No 77
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=1.4e-38 Score=368.36 Aligned_cols=308 Identities=18% Similarity=0.216 Sum_probs=244.5
Q ss_pred hCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHh
Q psy7557 613 NLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK 692 (936)
Q Consensus 613 ~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 692 (936)
.+|+ .|+|+|..++|.++.|+ |+.++||+|||++|.+|++...+ .|+.|+||+||++||.|+.+.+..
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL---------~g~~v~VvTpTreLA~Qdae~m~~ 174 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNAL---------AGNGVHIVTVNDYLAKRDSEWMGR 174 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHT---------TTSCEEEEESSHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHH---------hCCCeEEEeCCHHHHHHHHHHHHH
Confidence 3799 99999999999999998 99999999999999999976543 256799999999999999999988
Q ss_pred c-cCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHH-HHHHHcC------CCCCCCceEEEEcccchhc-cC-----
Q psy7557 693 I-DYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRL-NDFVSRA------SIDLKAVSFVVLDEADRML-DL----- 758 (936)
Q Consensus 693 ~-~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l-~~~l~~~------~~~~~~i~~lViDEah~l~-~~----- 758 (936)
+ ...|+++.+++||.+.. ......++||+||||++| .+++..+ ...++.+.++|+||||+|+ +.
T Consensus 175 l~~~lGLsv~~i~gg~~~~--~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPL 252 (922)
T 1nkt_A 175 VHRFLGLQVGVILATMTPD--ERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPL 252 (922)
T ss_dssp HHHHTTCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCE
T ss_pred HHhhcCCeEEEEeCCCCHH--HHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccce
Confidence 7 46799999999998754 334445699999999999 6777654 3567899999999999998 42
Q ss_pred ----------CCHHHHHHHhhhcC---------CCceEE-----------------EEEecCChHHHHH-----HHHhcC
Q psy7557 759 ----------GFEPQINKTSIYIN---------PNRQTV-----------------MTSATWNKDVQRV-----AKKYMV 797 (936)
Q Consensus 759 ----------~~~~~~~~i~~~~~---------~~~q~v-----------------~~SAT~~~~~~~~-----~~~~~~ 797 (936)
+|...+..+...++ +.+|++ ++|||.+.....+ +..++.
T Consensus 253 iiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~ 332 (922)
T 1nkt_A 253 IISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFS 332 (922)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCC
T ss_pred eecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhh
Confidence 47788899998887 678998 8999987533322 122221
Q ss_pred -C-------CeEEEeCCCC----------------------cccC------Cce--------------------------
Q psy7557 798 -N-------PVKVNVGSLD----------------------LAAT------HTV-------------------------- 815 (936)
Q Consensus 798 -~-------~~~i~~~~~~----------------------~~~~------~~~-------------------------- 815 (936)
+ +..+.+.... .... ..+
T Consensus 333 ~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef 412 (922)
T 1nkt_A 333 RDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAEL 412 (922)
T ss_dssp BTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHH
T ss_pred cccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHH
Confidence 1 1111111000 0000 000
Q ss_pred ---------------------EEEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeC
Q psy7557 816 ---------------------TQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYG 874 (936)
Q Consensus 816 ---------------------~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~ 874 (936)
.+.++++....|...+...+......+.|+||||+|+..++.++..|...|+++..+||
T Consensus 413 ~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLna 492 (922)
T 1nkt_A 413 HEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNA 492 (922)
T ss_dssp HHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECS
T ss_pred HHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecC
Confidence 01234566677888888887765455678999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCC-------------------------------------------
Q psy7557 875 DLSQEDREIALEDITSGYARICVATDVASRGLDVPDL------------------------------------------- 911 (936)
Q Consensus 875 ~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v------------------------------------------- 911 (936)
++.+.++..+.+.|+.| .|+|||++++||+||+.+
T Consensus 493 k~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (922)
T 1nkt_A 493 KYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKE 570 (922)
T ss_dssp SCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred ChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHh
Confidence 99888888888888888 799999999999999975
Q ss_pred ---------CEEEEccCCCChhhhHhhhhhccCC
Q psy7557 912 ---------THVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 912 ---------~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
.+||+|+.|.|...|+||+|||||.
T Consensus 571 ~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRq 604 (922)
T 1nkt_A 571 AKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQ 604 (922)
T ss_dssp HHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGG
T ss_pred hhHHHhcCCcEEEeccCCCCHHHHHHHhcccccC
Confidence 5999999999999999999999994
No 78
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1e-37 Score=363.65 Aligned_cols=309 Identities=22% Similarity=0.273 Sum_probs=239.0
Q ss_pred CCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhcc-CC
Q psy7557 618 TPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID-YK 696 (936)
Q Consensus 618 ~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~-~~ 696 (936)
.|+|+|.++++.++.+ ++++.+|||+|||++++++++..+. ..+.++||++|+++|+.|+.+.+.++. ..
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~--------~~~~~~liv~P~~~L~~q~~~~~~~~~~~~ 79 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT--------KYGGKVLMLAPTKPLVLQHAESFRRLFNLP 79 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH--------HSCSCEEEECSSHHHHHHHHHHHHHHBCSC
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh--------cCCCeEEEEECCHHHHHHHHHHHHHHhCcc
Confidence 7999999999999998 9999999999999999999887653 246789999999999999999999974 34
Q ss_pred CCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHHHhhhcCCCce
Q psy7557 697 GLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQ 776 (936)
Q Consensus 697 ~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q 776 (936)
+.++..++|+...... .....+++|+|+||+.+...+..+.+.+.++++||+||||++.+.+....+........+..+
T Consensus 80 ~~~v~~~~g~~~~~~~-~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~ 158 (494)
T 1wp9_A 80 PEKIVALTGEKSPEER-SKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPL 158 (494)
T ss_dssp GGGEEEECSCSCHHHH-HHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCC
T ss_pred hhheEEeeCCcchhhh-hhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCe
Confidence 5578888887765543 333445899999999999999888788899999999999999866545555555555567889
Q ss_pred EEEEEecCChH---HHHHHHHhcCCCeEEEeCCCCcc----cCCceEEEEEE----------------------------
Q psy7557 777 TVMTSATWNKD---VQRVAKKYMVNPVKVNVGSLDLA----ATHTVTQKIII---------------------------- 821 (936)
Q Consensus 777 ~v~~SAT~~~~---~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~---------------------------- 821 (936)
++++|||+..+ +..+...+...+..+........ ...........
T Consensus 159 ~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (494)
T 1wp9_A 159 VIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGL 238 (494)
T ss_dssp EEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred EEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999743 33444443322222211110000 00000000000
Q ss_pred --------------------------------------------------------------------------------
Q psy7557 822 -------------------------------------------------------------------------------- 821 (936)
Q Consensus 822 -------------------------------------------------------------------------------- 821 (936)
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 318 (494)
T 1wp9_A 239 LESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKE 318 (494)
T ss_dssp SSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred ccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhh
Confidence
Q ss_pred --------------------cCcchhHHHHHHHHHhcc--CCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeC-----
Q psy7557 822 --------------------LDEDEKKDWLMEFFDNMD--EERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYG----- 874 (936)
Q Consensus 822 --------------------~~~~~k~~~l~~~l~~~~--~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~----- 874 (936)
.....|...+.+++.... ....++||||+++..++.++..|...++.+..+||
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~ 398 (494)
T 1wp9_A 319 IFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKE 398 (494)
T ss_dssp HHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEecccccc
Confidence 022335555666666543 45789999999999999999999999999999999
Q ss_pred ---CCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 875 ---DLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 875 ---~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.+...|+||+||+||.
T Consensus 399 ~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~ 463 (494)
T 1wp9_A 399 NDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRH 463 (494)
T ss_dssp ------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSC
T ss_pred ccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999994
No 79
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=2.2e-40 Score=376.09 Aligned_cols=286 Identities=16% Similarity=0.154 Sum_probs=205.7
Q ss_pred HHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhccCCCCEEEEEeCCcc
Q psy7557 109 ILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKE 188 (936)
Q Consensus 109 ~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~ 188 (936)
.+++|+|++++||||||||++|++|++..+.. .+++++|++||++||.|+++.++.+ .+... ++
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~--------~~~~~lil~Ptr~La~Q~~~~l~~~-----~v~~~-~~-- 67 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR--------RRLRTLVLAPTRVVLSEMKEAFHGL-----DVKFH-TQ-- 67 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTTS-----CEEEE-SS--
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh--------cCCeEEEEcchHHHHHHHHHHHhcC-----CeEEe-cc--
Confidence 46789999999999999999999999987643 3678999999999999999998864 22211 11
Q ss_pred chHHHHHhhcCCcE-EEeCCchhHHHHHcCC--------cCCCCceEEEEccchhhhcCCCHHHHHHHHhhc-CCCCcEE
Q psy7557 189 IEPQLEKIREGCHI-LIATPGRLNDFVSRAS--------IDLKAVSFVVLDEADRMLDLGFEPQINKTSIYI-NPNRQTV 258 (936)
Q Consensus 189 ~~~~~~~~~~~~~I-iv~Tp~~l~~~l~~~~--------~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~-~~~~q~~ 258 (936)
.+ .|+||+++.+++..+. ..+++++++|+||||++ +.++...+..+.... ++++|++
T Consensus 68 ------------~~~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l 134 (440)
T 1yks_A 68 ------------AFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATI 134 (440)
T ss_dssp ------------CCCCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEE
T ss_pred ------------cceeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEE
Confidence 11 4899988765443332 34789999999999998 333333333332222 4679999
Q ss_pred EEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHH
Q psy7557 259 MTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAM 338 (936)
Q Consensus 259 ~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l 338 (936)
+||||+++.+..++.. ..++.... ..+....+. .++..+.. .++++||||++++.++.+
T Consensus 135 ~~SAT~~~~~~~~~~~--~~~~~~~~---------------~~~~~~~~~-~~~~~l~~---~~~~~lVF~~s~~~a~~l 193 (440)
T 1yks_A 135 LMTATPPGTSDEFPHS--NGEIEDVQ---------------TDIPSEPWN-TGHDWILA---DKRPTAWFLPSIRAANVM 193 (440)
T ss_dssp EECSSCTTCCCSSCCC--SSCEEEEE---------------CCCCSSCCS-SSCHHHHH---CCSCEEEECSCHHHHHHH
T ss_pred EEeCCCCchhhhhhhc--CCCeeEee---------------eccChHHHH-HHHHHHHh---cCCCEEEEeCCHHHHHHH
Confidence 9999998764322221 11111110 011111111 11222222 367999999999999999
Q ss_pred HHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEE-------------------ecC
Q psy7557 339 SSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVIN-------------------YDF 399 (936)
Q Consensus 339 ~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~-------------------~d~ 399 (936)
++.|...+.++..+|| .+|..+++.|++|+++|||||+++++|||+| +++||+ |+.
T Consensus 194 ~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~ 268 (440)
T 1yks_A 194 AASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPL 268 (440)
T ss_dssp HHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEE
T ss_pred HHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeecccc
Confidence 9999999999999999 4688999999999999999999999999999 999996 999
Q ss_pred CCCccccccCCCCcccC-CCceeEEEEe---cccChhhHHhHHHHHhhcCCccc
Q psy7557 400 PSHIEEYVHRVGRTGRA-GKSGESITLM---TRKDWSHAHEIIPILEEGGHESY 449 (936)
Q Consensus 400 p~s~~~y~qr~GRagR~-g~~g~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~ 449 (936)
|.+..+|+||+|||||. |+.|.|++|+ ++.+...+..+...+...+.+.+
T Consensus 269 p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~ 322 (440)
T 1yks_A 269 RISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVR 322 (440)
T ss_dssp ECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCG
T ss_pred ccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhcccccccc
Confidence 99999999999999997 7899999996 67788888888777665555444
No 80
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=1.7e-40 Score=391.52 Aligned_cols=301 Identities=15% Similarity=0.143 Sum_probs=219.5
Q ss_pred HHHhCCCC-----CCcHHHH-----HHHHHHh------cCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEE
Q psy7557 90 QLENLSFT-----TPSPIQA-----QAWPILM------SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSV 153 (936)
Q Consensus 90 ~l~~~g~~-----~~~~~Q~-----~ai~~~~------~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~ 153 (936)
.+...||. .|||+|. ++||.++ +|+|++++||||||||++|++|++..+.. .++++
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~--------~~~~~ 273 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ--------KRLRT 273 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH--------TTCCE
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCcE
Confidence 45566777 8999999 9999988 89999999999999999999999987643 46789
Q ss_pred EEEcCcHHHHHHHHHHHHhccCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcC--------CcCCCCce
Q psy7557 154 LVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRA--------SIDLKAVS 225 (936)
Q Consensus 154 lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~--------~~~~~~~~ 225 (936)
||++||++||.|+++.++.+ ++. .. .+ .. -.++||+++.+++..+ ...+++++
T Consensus 274 lilaPTr~La~Q~~~~l~~~---~i~--~~-~~-~l------------~~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~ 334 (673)
T 2wv9_A 274 AVLAPTRVVAAEMAEALRGL---PVR--YL-TP-AV------------QREHSGNEIVDVMCHATLTHRLMSPLRVPNYN 334 (673)
T ss_dssp EEEESSHHHHHHHHHHTTTS---CCE--EC-CC----------------CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCS
T ss_pred EEEccHHHHHHHHHHHHhcC---Cee--ee-cc-cc------------cccCCHHHHHHHHHhhhhHHHHhcccccccce
Confidence 99999999999999998865 221 11 00 00 0167777664433222 23688999
Q ss_pred EEEEccchhhhcCCCHHHHHHHHhhc-CCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCc
Q psy7557 226 FVVLDEADRMLDLGFEPQINKTSIYI-NPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDE 304 (936)
Q Consensus 226 ~lViDEah~l~~~~~~~~~~~i~~~~-~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 304 (936)
+|||||||++ +.++...+..+.... ++++|+++||||+++.+..+... ..|+..... ....
T Consensus 335 lvViDEaH~~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i~~v~~---------------~~~~ 396 (673)
T 2wv9_A 335 LFVMDEAHFT-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPVHDVSS---------------EIPD 396 (673)
T ss_dssp EEEEESTTCC-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCEEEEEC---------------CCCS
T ss_pred EEEEeCCccc-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCceEEEee---------------ecCH
Confidence 9999999998 222223333333333 36789999999998664322111 112111100 0111
Q ss_pred hhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEeccccc
Q psy7557 305 DEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASR 384 (936)
Q Consensus 305 ~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~ 384 (936)
... ..++..+. ...+++||||++++.++.+++.|...++.+..+||+ +|..+++.|++|+++|||||+++++
T Consensus 397 ~~~-~~~l~~l~---~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~ 468 (673)
T 2wv9_A 397 RAW-SSGFEWIT---DYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEM 468 (673)
T ss_dssp SCC-SSCCHHHH---SCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGT
T ss_pred HHH-HHHHHHHH---hCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhc
Confidence 111 11122222 247899999999999999999999999999999994 7999999999999999999999999
Q ss_pred CCCCCCCcEEEE--------------------ecCCCCccccccCCCCcccC-CCceeEEEEe---cccChhhHHhHHHH
Q psy7557 385 GLDVPDLTHVIN--------------------YDFPSHIEEYVHRVGRTGRA-GKSGESITLM---TRKDWSHAHEIIPI 440 (936)
Q Consensus 385 GiDip~v~~VI~--------------------~d~p~s~~~y~qr~GRagR~-g~~g~~~~~~---~~~~~~~~~~l~~~ 440 (936)
|||+| +++||+ ||+|.+.++|+||+|||||. |+.|.|++|+ ++.|...+..+...
T Consensus 469 GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~ 547 (673)
T 2wv9_A 469 GANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAK 547 (673)
T ss_dssp TCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHH
T ss_pred ceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHH
Confidence 99999 999998 67899999999999999999 7899999996 56777777776665
Q ss_pred Hhhc
Q psy7557 441 LEEG 444 (936)
Q Consensus 441 l~~~ 444 (936)
+...
T Consensus 548 ~~l~ 551 (673)
T 2wv9_A 548 ILLD 551 (673)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 5433
No 81
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=9.2e-39 Score=373.56 Aligned_cols=313 Identities=16% Similarity=0.152 Sum_probs=238.6
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhccC
Q psy7557 96 FTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDY 175 (936)
Q Consensus 96 ~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 175 (936)
..+|+|+|.+|++.+++++|+++++|||+|||++|++|+...+.. .++++|||+||++|+.|+++.++++..
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~--------~~~~vlvl~P~~~L~~Q~~~~~~~~~~ 182 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN--------YEGKILIIVPTTALTTQMADDFVDYRL 182 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH--------CSSEEEEEESSHHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC--------CCCeEEEEECcHHHHHHHHHHHHHhhc
Confidence 348999999999999999999999999999999999988766532 234999999999999999999998753
Q ss_pred -CCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHHHhhcCCC
Q psy7557 176 -KGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPN 254 (936)
Q Consensus 176 -~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~ 254 (936)
.+.++..++||.....+ +..+++|+|+||+.+.. .....++++++||+||||++.. ..+..++..+.+.
T Consensus 183 ~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~ 252 (510)
T 2oca_A 183 FSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG----KSISSIISGLNNC 252 (510)
T ss_dssp SCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTC
T ss_pred CCccceEEEecCCccccc---cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccC
Confidence 35788888888776554 44568999999997643 3345578899999999999865 5677788888888
Q ss_pred CcEEEEEeccchHHHHH-HHHhcCCCEEEEeCCCCc-----ccCCceEEEEEEeCc---------------------hhh
Q psy7557 255 RQTVMTSATWNKDVQRV-AKKYMVNPVKVNVGSLDL-----AATHTVTQKIIILDE---------------------DEK 307 (936)
Q Consensus 255 ~q~~~~SAT~~~~~~~~-~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~---------------------~~k 307 (936)
.+++++|||++...... ....+.++..+.+..... ..+..+......... ..+
T Consensus 253 ~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (510)
T 2oca_A 253 MFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKR 332 (510)
T ss_dssp CEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHH
T ss_pred cEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHH
Confidence 99999999997654221 112223343332222110 001111111111111 123
Q ss_pred HHHHHHHHHhccC-CCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEe-cccccC
Q psy7557 308 KDWLMEFFDNMDE-ERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVAT-DVASRG 385 (936)
Q Consensus 308 ~~~l~~~l~~~~~-~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT-~~~~~G 385 (936)
...+.+.+..... .+.+++|||+ ...+..+++.|...+.++..+||+|++.+|..+++.|++|+.+||||| +++++|
T Consensus 333 ~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~G 411 (510)
T 2oca_A 333 NKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTG 411 (510)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcc
Confidence 3334455544323 3455666666 888999999999988899999999999999999999999999999999 999999
Q ss_pred CCCCCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEec
Q psy7557 386 LDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMT 427 (936)
Q Consensus 386 iDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~ 427 (936)
+|+|++++||++++|.+..+|+||+||+||.|..|.++++++
T Consensus 412 iDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 412 ISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred cccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999999999999999999999998886666665
No 82
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=2e-38 Score=378.03 Aligned_cols=304 Identities=19% Similarity=0.195 Sum_probs=228.6
Q ss_pred HHHHHHhCCCCCCcHHHHHHHHhhhcC------CcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCH
Q psy7557 607 ILRQLENLSFTTPSPIQAQAWPILMSG------HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTR 680 (936)
Q Consensus 607 ~~~~l~~~g~~~p~~iQ~~ai~~~l~g------~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~ 680 (936)
+.+.+..++| .|||+|.++++.++++ +|++++||||||||++|++|++..+. .+.+++|++||+
T Consensus 358 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~---------~g~qvlvlaPtr 427 (780)
T 1gm5_A 358 AEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE---------AGFQTAFMVPTS 427 (780)
T ss_dssp HHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH---------HTSCEEEECSCH
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHH---------cCCeEEEEeCcH
Confidence 4455678999 9999999999999865 59999999999999999999997763 367899999999
Q ss_pred HHHHHHHHHHHhcc-CCCCEEEEEECCccchHH---HHHHhcC-ceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchh
Q psy7557 681 ELATQIEREVNKID-YKGLKAVCVYGGKELEPQ---LEKIREG-CHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRM 755 (936)
Q Consensus 681 ~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~---~~~l~~~-~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l 755 (936)
+||.|+++.++++. ..++++..++|+...... ...+..+ ++|+|+||+.+.+ ...++++++||+||+|++
T Consensus 428 ~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~ 502 (780)
T 1gm5_A 428 ILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRF 502 (780)
T ss_dssp HHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC
T ss_pred HHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchh
Confidence 99999999999874 457899999998876543 3345554 8999999998754 456899999999999996
Q ss_pred ccCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHHH
Q psy7557 756 LDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFF 835 (936)
Q Consensus 756 ~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l 835 (936)
.... ...........++++||||+++....... ..+.....+.... .....+.. ......+...+...+
T Consensus 503 g~~q-----r~~l~~~~~~~~vL~mSATp~p~tl~~~~--~g~~~~s~i~~~p-~~r~~i~~---~~~~~~~~~~l~~~i 571 (780)
T 1gm5_A 503 GVKQ-----REALMNKGKMVDTLVMSATPIPRSMALAF--YGDLDVTVIDEMP-PGRKEVQT---MLVPMDRVNEVYEFV 571 (780)
T ss_dssp ----------CCCCSSSSCCCEEEEESSCCCHHHHHHH--TCCSSCEEECCCC-SSCCCCEE---CCCCSSTHHHHHHHH
T ss_pred hHHH-----HHHHHHhCCCCCEEEEeCCCCHHHHHHHH--hCCcceeeeeccC-CCCcceEE---EEeccchHHHHHHHH
Confidence 3221 11222233578999999998765544332 2222111111111 01111221 112223344455656
Q ss_pred HhccCCCCcEEEEcCChH--------HHHHHHHHHHh---cCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCcc
Q psy7557 836 DNMDEERDKVMVFMGRKA--------SVSAMSSDLAC---QYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASR 904 (936)
Q Consensus 836 ~~~~~~~~~~iIF~~s~~--------~~~~l~~~L~~---~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~ 904 (936)
......+.+++|||++.. .+..++..|.. .+..+..+||+|++.+|..+++.|++|+++|||||+++++
T Consensus 572 ~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~ 651 (780)
T 1gm5_A 572 RQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEV 651 (780)
T ss_dssp HHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCS
T ss_pred HHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCc
Confidence 555466788999999663 57888888887 3578999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEccCCC-ChhhhHhhhhhccCC
Q psy7557 905 GLDVPDLTHVINYDFPS-HIEEYVHRVGRTGEF 936 (936)
Q Consensus 905 Gidip~v~~VI~~d~p~-s~~~yiqr~GRaGR~ 936 (936)
|+|+|++++||++|.|. +...|.||+||+||+
T Consensus 652 GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~ 684 (780)
T 1gm5_A 652 GIDVPRANVMVIENPERFGLAQLHQLRGRVGRG 684 (780)
T ss_dssp CSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCS
T ss_pred cccCCCCCEEEEeCCCCCCHHHHHHHhcccCcC
Confidence 99999999999999996 688899999999995
No 83
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=2.2e-37 Score=323.96 Aligned_cols=238 Identities=43% Similarity=0.778 Sum_probs=210.7
Q ss_pred CCHHHHHHHHhhCCCceEEeecCCCccCCCCCCCCCCcccChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCc
Q psy7557 36 MTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHD 115 (936)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d 115 (936)
++.++++.+++.+. +.+.+ .+.|.|+.+|++ +++++.+++++.+.||.+|+|+|.++|+.+++|+|
T Consensus 3 ~~~~~~~~~~~~~~-i~~~~------------~~~p~~~~~f~~-~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~ 68 (242)
T 3fe2_A 3 RTAQEVETYRRSKE-ITVRG------------HNCPKPVLNFYE-ANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLD 68 (242)
T ss_dssp ---CHHHHHHHHHT-EEEES------------SCCCCCCSSTTT-TTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHhcCc-eEEeC------------CCCCCccCCHhh-cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCC
Confidence 46778889988764 55542 257899999998 69999999999999999999999999999999999
Q ss_pred EEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhcc-CCCCEEEEEeCCccchHHHH
Q psy7557 116 MIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLE 194 (936)
Q Consensus 116 ~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~ 194 (936)
++++||||||||++|++|++..+..... .....++++||++||++|+.|+++.++++. ..++++..++||.....+..
T Consensus 69 ~l~~apTGsGKT~~~~l~~l~~l~~~~~-~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 147 (242)
T 3fe2_A 69 MVGVAQTGSGKTLSYLLPAIVHINHQPF-LERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIR 147 (242)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTSCC-CCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHH
T ss_pred EEEECCCcCHHHHHHHHHHHHHHHhccc-cccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHH
Confidence 9999999999999999999988765322 122457889999999999999999999864 56889999999999988888
Q ss_pred HhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHH
Q psy7557 195 KIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKK 274 (936)
Q Consensus 195 ~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~ 274 (936)
.+..+++|+|+||++|.+++..+...+++++++|+||||++++++|...+..+...+++++|+++||||+|+.+..+++.
T Consensus 148 ~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~ 227 (242)
T 3fe2_A 148 DLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAED 227 (242)
T ss_dssp HHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHH
T ss_pred HhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHH
Confidence 88889999999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEeCCCC
Q psy7557 275 YMVNPVKVNVGSLD 288 (936)
Q Consensus 275 ~~~~~~~i~~~~~~ 288 (936)
++.+|+.+.++..+
T Consensus 228 ~l~~~~~i~~~~~e 241 (242)
T 3fe2_A 228 FLKDYIHINIGALE 241 (242)
T ss_dssp HCSSCEEEEECC--
T ss_pred HCCCCEEEEecCCC
Confidence 99999999887643
No 84
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=8.8e-39 Score=384.44 Aligned_cols=336 Identities=18% Similarity=0.245 Sum_probs=247.4
Q ss_pred CcccChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhc-CCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCC
Q psy7557 72 NPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMS-GHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAG 150 (936)
Q Consensus 72 ~p~~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~-g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~ 150 (936)
.|+.+|.+ +++++.+.+.+...| ..|+++|.++|+.++. |++++++||||||||+ ++|++...... ....+
T Consensus 69 ~~~~~f~~-~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~----~~~~g 140 (773)
T 2xau_A 69 GKINPFTG-REFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEM----PHLEN 140 (773)
T ss_dssp SSBCTTTC-SBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHC----GGGGT
T ss_pred CCCCCccc-cCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhcc----ccCCC
Confidence 34567877 689999999999988 7899999999998875 5689999999999999 56766332211 11236
Q ss_pred CEEEEEcCcHHHHHHHHHHHHhccC--CCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEE
Q psy7557 151 PSVLVMAPTRELATQIEREVNKIDY--KGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVV 228 (936)
Q Consensus 151 ~~~lil~Pt~~La~Q~~~~~~~~~~--~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lV 228 (936)
++++|++|+++||.|+++.+..... .+..+........ ....+++|+|+|||++.+.+... ..+.++++||
T Consensus 141 ~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lI 213 (773)
T 2xau_A 141 TQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMED-HDLSRYSCII 213 (773)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEE
T ss_pred ceEEecCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEE
Confidence 7899999999999999988766321 1222221111111 11235899999999998877664 4588999999
Q ss_pred Eccchh-hhcCCC-HHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchh
Q psy7557 229 LDEADR-MLDLGF-EPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDE 306 (936)
Q Consensus 229 iDEah~-l~~~~~-~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 306 (936)
|||+|. .++..+ ...+..+. ...++.|++++|||++. ..+.. ++.++..+.+... ...+.+.+......+
T Consensus 214 lDEah~R~ld~d~~~~~l~~l~-~~~~~~~iIl~SAT~~~--~~l~~-~~~~~~vi~v~gr----~~pv~~~~~~~~~~~ 285 (773)
T 2xau_A 214 LDEAHERTLATDILMGLLKQVV-KRRPDLKIIIMSATLDA--EKFQR-YFNDAPLLAVPGR----TYPVELYYTPEFQRD 285 (773)
T ss_dssp ECSGGGCCHHHHHHHHHHHHHH-HHCTTCEEEEEESCSCC--HHHHH-HTTSCCEEECCCC----CCCEEEECCSSCCSC
T ss_pred ecCccccccchHHHHHHHHHHH-HhCCCceEEEEeccccH--HHHHH-HhcCCCcccccCc----ccceEEEEecCCchh
Confidence 999995 665332 22333333 33468899999999964 34444 4444433443332 234555444333333
Q ss_pred hHHHHHHHHHh-c-cCCCCcEEEEeCchHHHHHHHHHhhh-----------cCCceeeecCCCCHHHHHHHHHHhh----
Q psy7557 307 KKDWLMEFFDN-M-DEERDKVMVFMGRKASVSAMSSDLAC-----------QYRKSCSLYGDLSQEDREIALEDIT---- 369 (936)
Q Consensus 307 k~~~l~~~l~~-~-~~~~~~~iVF~~~~~~~~~l~~~L~~-----------~~~~~~~~h~~~~~~~R~~~~~~f~---- 369 (936)
........+.. + ....+++||||+++..++.+++.|.. .++.+..+||+|++.+|..+++.|+
T Consensus 286 ~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~ 365 (773)
T 2xau_A 286 YLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHN 365 (773)
T ss_dssp HHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSS
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccC
Confidence 33322222221 1 13578999999999999999999975 4678899999999999999999999
Q ss_pred -cCCcEEEEEecccccCCCCCCCcEEEEecC------------------CCCccccccCCCCcccCCCceeEEEEecccC
Q psy7557 370 -SGYARICVATDVASRGLDVPDLTHVINYDF------------------PSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430 (936)
Q Consensus 370 -~g~~~vLvaT~~~~~GiDip~v~~VI~~d~------------------p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~ 430 (936)
+|..+|||||+++++|||+|+|++||++++ |.|..+|+||+|||||. ..|.|+.|+++.+
T Consensus 366 ~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~ 444 (773)
T 2xau_A 366 GRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEA 444 (773)
T ss_dssp SSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHH
T ss_pred CCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHH
Confidence 999999999999999999999999999887 88999999999999999 7999999998765
Q ss_pred h
Q psy7557 431 W 431 (936)
Q Consensus 431 ~ 431 (936)
.
T Consensus 445 ~ 445 (773)
T 2xau_A 445 F 445 (773)
T ss_dssp H
T ss_pred h
Confidence 4
No 85
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=2.2e-39 Score=374.72 Aligned_cols=287 Identities=18% Similarity=0.186 Sum_probs=217.6
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhccCCCC
Q psy7557 99 PSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGL 178 (936)
Q Consensus 99 ~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 178 (936)
+.+.|..+++.+..++|++++||||||||++|.+|++. .+.++||++|||+||.|+++.+.+.. +.
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~------------~g~~vLVl~PTReLA~Qia~~l~~~~--g~ 283 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA------------QGYKVLVLNPSVAATLGFGAYMSKAH--GI 283 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH------------TTCCEEEEESCHHHHHHHHHHHHHHH--SC
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH------------CCCeEEEEcchHHHHHHHHHHHHHHh--CC
Confidence 34555555555668889999999999999999998773 25589999999999999999887642 34
Q ss_pred EEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHHHhhcCCCCc--
Q psy7557 179 KAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQ-- 256 (936)
Q Consensus 179 ~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q-- 256 (936)
.+...+|+.. ...+++|+|+||++| +....+.++++++||||||| +++.+|...+..+...++..+|
T Consensus 284 ~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~~~~l 352 (666)
T 3o8b_A 284 DPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETAGARL 352 (666)
T ss_dssp CCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTTTCSE
T ss_pred CeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhcCCce
Confidence 5566677754 345689999999997 45667788899999999996 5677888889999988887776
Q ss_pred EEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCchHHHH
Q psy7557 257 TVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVS 336 (936)
Q Consensus 257 ~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~ 336 (936)
++++|||++..+. ...+....+... ....+ ........ +.. ...+++||||++++.++
T Consensus 353 lil~SAT~~~~i~------~~~p~i~~v~~~---~~~~i----~~~~~~~~-------l~~--~~~~~vLVFv~Tr~~ae 410 (666)
T 3o8b_A 353 VVLATATPPGSVT------VPHPNIEEVALS---NTGEI----PFYGKAIP-------IEA--IRGGRHLIFCHSKKKCD 410 (666)
T ss_dssp EEEEESSCTTCCC------CCCTTEEEEECB---SCSSE----EETTEEEC-------GGG--SSSSEEEEECSCHHHHH
T ss_pred EEEECCCCCcccc------cCCcceEEEeec---ccchh----HHHHhhhh-------hhh--ccCCcEEEEeCCHHHHH
Confidence 6778999986321 111111111000 00001 00000000 111 25789999999999999
Q ss_pred HHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEE----------Eec--------
Q psy7557 337 AMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVI----------NYD-------- 398 (936)
Q Consensus 337 ~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI----------~~d-------- 398 (936)
.+++.|...++.+..+||+|++++ |+++..+||||||++++|||+| +++|| |||
T Consensus 411 ~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~ 482 (666)
T 3o8b_A 411 ELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIE 482 (666)
T ss_dssp HHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEE
T ss_pred HHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccc
Confidence 999999999999999999999875 4566779999999999999997 99998 777
Q ss_pred ---CCCCccccccCCCCcccCCCceeEEEEecccChhh--H--HhHHHHHh
Q psy7557 399 ---FPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSH--A--HEIIPILE 442 (936)
Q Consensus 399 ---~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~--~--~~l~~~l~ 442 (936)
.|.+.++|+||+||||| |+.|. ++|+++.+... + ..+.+..+
T Consensus 483 ~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~ 531 (666)
T 3o8b_A 483 TTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYD 531 (666)
T ss_dssp EEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHH
T ss_pred cccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhc
Confidence 89999999999999999 99999 99999887654 2 44555443
No 86
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=5.6e-37 Score=318.15 Aligned_cols=217 Identities=48% Similarity=0.901 Sum_probs=191.7
Q ss_pred CCCCCCcccChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCC
Q psy7557 67 DFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 146 (936)
Q Consensus 67 ~~~~p~p~~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~ 146 (936)
+...|.|+.+|++.+++++.+++++.+.||.+|+|+|.++++.+++|+|++++||||||||++|++|++..+........
T Consensus 11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~ 90 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISRE 90 (228)
T ss_dssp CCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-------
T ss_pred cCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhh
Confidence 45789999999998899999999999999999999999999999999999999999999999999999988754432223
Q ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHhccCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceE
Q psy7557 147 ERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSF 226 (936)
Q Consensus 147 ~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~ 226 (936)
...++++||++||++||.|+++.++++...++++..++||.....+...+..+++|+|+||+++.+++......++++++
T Consensus 91 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~ 170 (228)
T 3iuy_A 91 QRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITY 170 (228)
T ss_dssp --CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCE
T ss_pred ccCCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceE
Confidence 34678999999999999999999999887889999999999888888888888999999999999999888888999999
Q ss_pred EEEccchhhhcCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEE
Q psy7557 227 VVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVN 283 (936)
Q Consensus 227 lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~ 283 (936)
+|+||||++++++|...+..+...+++++|+++||||+|+.+..++..++.+|+.+.
T Consensus 171 lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 171 LVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp EEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred EEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 999999999999999999999999999999999999999999999999999998775
No 87
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=4.3e-36 Score=375.57 Aligned_cols=306 Identities=19% Similarity=0.191 Sum_probs=236.5
Q ss_pred CHHHHHHH-HhCCCCCCcHHHHHHHHhhhc----CC--cEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEE
Q psy7557 604 YPEILRQL-ENLSFTTPSPIQAQAWPILMS----GH--DMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVM 676 (936)
Q Consensus 604 ~~~~~~~l-~~~g~~~p~~iQ~~ai~~~l~----g~--d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil 676 (936)
++...+.+ ..++| .|||+|.+|++.++. |+ |+++++|||||||++|+++++... ..+++++|+
T Consensus 589 ~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~---------~~g~~vlvl 658 (1151)
T 2eyq_A 589 DREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV---------DNHKQVAVL 658 (1151)
T ss_dssp CHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHH---------TTTCEEEEE
T ss_pred CHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHH---------HhCCeEEEE
Confidence 34444444 56789 579999999999986 66 999999999999999999887655 246799999
Q ss_pred ecCHHHHHHHHHHHHhc-cCCCCEEEEEECCccchHH---HHHHhcC-ceEEEeCchHHHHHHHcCCCCCCCceEEEEcc
Q psy7557 677 APTRELATQIEREVNKI-DYKGLKAVCVYGGKELEPQ---LEKIREG-CHILIATPGRLNDFVSRASIDLKAVSFVVLDE 751 (936)
Q Consensus 677 ~Pt~~La~Q~~~~~~~~-~~~~~~~~~~~gg~~~~~~---~~~l~~~-~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDE 751 (936)
+||++||.|+++.+.++ ...++++..++|....... ...+..+ ++|+|+||+.+. ..+.++++++|||||
T Consensus 659 vPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDE 733 (1151)
T 2eyq_A 659 VPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDE 733 (1151)
T ss_dssp CSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEES
T ss_pred echHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEec
Confidence 99999999999999865 4557888888776554433 3345554 899999997663 356789999999999
Q ss_pred cchhccCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHH
Q psy7557 752 ADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWL 831 (936)
Q Consensus 752 ah~l~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 831 (936)
||++. .....++..++++.++++||||+++.........+.++..+...+ .....+...+..... ....
T Consensus 734 aH~~g-----~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~---~~r~~i~~~~~~~~~---~~i~ 802 (1151)
T 2eyq_A 734 EHRFG-----VRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP---ARRLAVKTFVREYDS---MVVR 802 (1151)
T ss_dssp GGGSC-----HHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCC---CBCBCEEEEEEECCH---HHHH
T ss_pred hHhcC-----hHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCC---CCccccEEEEecCCH---HHHH
Confidence 99952 334445555667889999999998777766666555543332221 112233333332222 2222
Q ss_pred HHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhc--CCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCC
Q psy7557 832 MEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQ--YRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVP 909 (936)
Q Consensus 832 ~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~--~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip 909 (936)
..++... ..+++++|||+++..++.++..|... +..+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 803 ~~il~~l-~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip 881 (1151)
T 2eyq_A 803 EAILREI-LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIP 881 (1151)
T ss_dssp HHHHHHH-TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCT
T ss_pred HHHHHHH-hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeeccc
Confidence 2333333 45689999999999999999999987 67899999999999999999999999999999999999999999
Q ss_pred CCCEEEEccC-CCChhhhHhhhhhccCC
Q psy7557 910 DLTHVINYDF-PSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 910 ~v~~VI~~d~-p~s~~~yiqr~GRaGR~ 936 (936)
++++||+++. +.+..+|+||+||+||.
T Consensus 882 ~v~~VIi~~~~~~~l~~l~Qr~GRvgR~ 909 (1151)
T 2eyq_A 882 TANTIIIERADHFGLAQLHQLRGRVGRS 909 (1151)
T ss_dssp TEEEEEETTTTSSCHHHHHHHHTTCCBT
T ss_pred CCcEEEEeCCCCCCHHHHHHHHhccCcC
Confidence 9999999998 46899999999999994
No 88
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=3.2e-36 Score=315.12 Aligned_cols=238 Identities=43% Similarity=0.778 Sum_probs=208.2
Q ss_pred CCHHHHHHHHhhcCCceeeeecCCCCcCCCCCCCCCCCcCChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCc
Q psy7557 556 MTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHD 635 (936)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d 635 (936)
++.++++.+++... +.+.. ...|.|+.+|.+ +++++.+++.|.++||..|+|+|.++++.+++|+|
T Consensus 3 ~~~~~~~~~~~~~~-i~~~~------------~~~p~~~~~f~~-~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~ 68 (242)
T 3fe2_A 3 RTAQEVETYRRSKE-ITVRG------------HNCPKPVLNFYE-ANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLD 68 (242)
T ss_dssp ---CHHHHHHHHHT-EEEES------------SCCCCCCSSTTT-TTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHhcCc-eEEeC------------CCCCCccCCHhh-cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCC
Confidence 35567777876653 44432 246889999988 78999999999999999999999999999999999
Q ss_pred EEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhcc-CCCCEEEEEECCccchHHHH
Q psy7557 636 MIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLE 714 (936)
Q Consensus 636 ~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~ 714 (936)
++++||||||||++|++|++.++..+.. .....++++||++||++|+.|+.+.++++. ..++++..++||.....+..
T Consensus 69 ~l~~apTGsGKT~~~~l~~l~~l~~~~~-~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 147 (242)
T 3fe2_A 69 MVGVAQTGSGKTLSYLLPAIVHINHQPF-LERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIR 147 (242)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTSCC-CCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHH
T ss_pred EEEECCCcCHHHHHHHHHHHHHHHhccc-cccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHH
Confidence 9999999999999999999988764322 123457899999999999999999999874 55789999999999988888
Q ss_pred HHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHH
Q psy7557 715 KIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKK 794 (936)
Q Consensus 715 ~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~ 794 (936)
.+..+++|+|+||+++.+++.++...+++++++|+||||++++++|...+..+...+++++|+++||||+|+.+..+++.
T Consensus 148 ~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~ 227 (242)
T 3fe2_A 148 DLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAED 227 (242)
T ss_dssp HHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHH
T ss_pred HhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHH
Confidence 88899999999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCeEEEeCCCC
Q psy7557 795 YMVNPVKVNVGSLD 808 (936)
Q Consensus 795 ~~~~~~~i~~~~~~ 808 (936)
++.+|+.+.++..+
T Consensus 228 ~l~~~~~i~~~~~e 241 (242)
T 3fe2_A 228 FLKDYIHINIGALE 241 (242)
T ss_dssp HCSSCEEEEECC--
T ss_pred HCCCCEEEEecCCC
Confidence 99999999887643
No 89
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=7.9e-38 Score=356.94 Aligned_cols=275 Identities=14% Similarity=0.108 Sum_probs=205.9
Q ss_pred CCCCCcHHHHHHHHhhhcCCcE-EEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc
Q psy7557 615 SFTTPSPIQAQAWPILMSGHDM-IGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693 (936)
Q Consensus 615 g~~~p~~iQ~~ai~~~l~g~d~-i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 693 (936)
|+..|+|+|. ++|.+++++++ +++||||||||++|++|++..... .++++||++||++||.|+.+.+..+
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~--------~~~~~lvl~Ptr~La~Q~~~~l~g~ 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL--------RRLRTLILAPTRVVAAEMEEALRGL 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTTS
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh--------cCCcEEEECCCHHHHHHHHHHhcCc
Confidence 7889999985 79999999887 888999999999999999876643 3679999999999999999988643
Q ss_pred cCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHHHhh-hcC
Q psy7557 694 DYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSI-YIN 772 (936)
Q Consensus 694 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~-~~~ 772 (936)
.+....+.... ....+..|.++|++.+...+.+. ..++++++|||||||++ +.++...+..+.. ..+
T Consensus 72 -----~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~ 139 (451)
T 2jlq_A 72 -----PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEM 139 (451)
T ss_dssp -----CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHT
T ss_pred -----eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcC
Confidence 22221111111 01123578999999998777654 45889999999999987 3333333333322 235
Q ss_pred CCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCCh
Q psy7557 773 PNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRK 852 (936)
Q Consensus 773 ~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~ 852 (936)
++.|+++||||++.....+ +..++..+..... .. .... .. +...+.. ..+++||||+++
T Consensus 140 ~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~-~p-~~~~---------~~----~~~~l~~---~~~~~lVF~~s~ 198 (451)
T 2jlq_A 140 GEAAAIFMTATPPGSTDPF---PQSNSPIEDIERE-IP-ERSW---------NT----GFDWITD---YQGKTVWFVPSI 198 (451)
T ss_dssp TSCEEEEECSSCTTCCCSS---CCCSSCEEEEECC-CC-SSCC---------SS----SCHHHHH---CCSCEEEECSSH
T ss_pred CCceEEEEccCCCccchhh---hcCCCceEecCcc-CC-chhh---------HH----HHHHHHh---CCCCEEEEcCCH
Confidence 6899999999998644322 2233333332211 00 0000 00 1122222 256899999999
Q ss_pred HHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEEcc--------------
Q psy7557 853 ASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYD-------------- 918 (936)
Q Consensus 853 ~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d-------------- 918 (936)
..|+.++..|...++.+..+||++. ..+++.|++|+.+|||||+++++|+|+|+ ++||+||
T Consensus 199 ~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~ 273 (451)
T 2jlq_A 199 KAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPER 273 (451)
T ss_dssp HHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCE
T ss_pred HHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccce
Confidence 9999999999999999999999764 57899999999999999999999999999 9999999
Q ss_pred ------CCCChhhhHhhhhhccCC
Q psy7557 919 ------FPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 919 ------~p~s~~~yiqr~GRaGR~ 936 (936)
.|.+..+|+||+|||||.
T Consensus 274 l~~~~~~p~s~~~y~Qr~GRaGR~ 297 (451)
T 2jlq_A 274 VILAGPIPVTPASAAQRRGRIGRN 297 (451)
T ss_dssp EEEEEEEECCHHHHHHHHTTSSCC
T ss_pred eeecccccCCHHHHHHhccccCCC
Confidence 999999999999999995
No 90
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.4e-36 Score=313.34 Aligned_cols=217 Identities=48% Similarity=0.902 Sum_probs=191.4
Q ss_pred CCCCCCCcCChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCc
Q psy7557 587 DFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 666 (936)
Q Consensus 587 ~~~~p~~~~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~ 666 (936)
....|.|..+|++++++++.++++|.++||.+|+|+|.++++.+++|+|++++||||||||++|++|++..+..+.....
T Consensus 11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~ 90 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISRE 90 (228)
T ss_dssp CCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-------
T ss_pred cCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhh
Confidence 34689999999998999999999999999999999999999999999999999999999999999999987755433333
Q ss_pred cCCCCEEEEEecCHHHHHHHHHHHHhccCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceE
Q psy7557 667 ERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSF 746 (936)
Q Consensus 667 ~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~ 746 (936)
...++++||++||++||.|+.+.++++...++++..++||.....+...+..+++|+|+||+++.+++......++++++
T Consensus 91 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~ 170 (228)
T 3iuy_A 91 QRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITY 170 (228)
T ss_dssp --CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCE
T ss_pred ccCCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceE
Confidence 34688999999999999999999999987889999999999888888888889999999999999999988888999999
Q ss_pred EEEcccchhccCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEE
Q psy7557 747 VVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVN 803 (936)
Q Consensus 747 lViDEah~l~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~ 803 (936)
||+||||++++++|...+..+...+++++|++++|||+|+.++.++..++.+|+.+.
T Consensus 171 lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 171 LVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp EEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred EEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 999999999999999999999999999999999999999999999999999998775
No 91
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=8.8e-37 Score=356.81 Aligned_cols=301 Identities=16% Similarity=0.150 Sum_probs=228.7
Q ss_pred CCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhccC-
Q psy7557 617 TTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDY- 695 (936)
Q Consensus 617 ~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~- 695 (936)
..|+|+|.+|++.+++++++++++|||||||++|++|+...+.. .++++||++||++|+.|+.+.++++..
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~--------~~~~vlvl~P~~~L~~Q~~~~~~~~~~~ 183 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN--------YEGKILIIVPTTALTTQMADDFVDYRLF 183 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH--------CSSEEEEEESSHHHHHHHHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC--------CCCeEEEEECcHHHHHHHHHHHHHhhcC
Confidence 48999999999999999999999999999999999988766532 245999999999999999999998853
Q ss_pred CCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHHHhhhcCCCc
Q psy7557 696 KGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNR 775 (936)
Q Consensus 696 ~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~~~~~ 775 (936)
.+..+..++|+.....+ +..+++|+|+||+.+.. .....++++++||+||||++.. ..+..++..+.+..
T Consensus 184 ~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~ 253 (510)
T 2oca_A 184 SHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCM 253 (510)
T ss_dssp CGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCC
T ss_pred CccceEEEecCCccccc---cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCc
Confidence 34678888888766554 44568999999997643 2334578899999999999865 55777777787888
Q ss_pred eEEEEEecCChHHHHHHH-HhcCCCeEEEeCCCCcc-----cCCceEEEEEEcC---------------------cchhH
Q psy7557 776 QTVMTSATWNKDVQRVAK-KYMVNPVKVNVGSLDLA-----ATHTVTQKIIILD---------------------EDEKK 828 (936)
Q Consensus 776 q~v~~SAT~~~~~~~~~~-~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~---------------------~~~k~ 828 (936)
+++++|||++........ ..+.++..+.+...... ....+.......+ ...+.
T Consensus 254 ~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (510)
T 2oca_A 254 FKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRN 333 (510)
T ss_dssp EEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHH
T ss_pred EEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHH
Confidence 999999999765422211 11223333222221110 0011111111111 11233
Q ss_pred HHHHHHHHhccC-CCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEec-ccCccCC
Q psy7557 829 DWLMEFFDNMDE-ERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVAT-DVASRGL 906 (936)
Q Consensus 829 ~~l~~~l~~~~~-~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT-~~~~~Gi 906 (936)
..+.+++..... ...++||||+ ...+..++..|...+..+..+||+|++.+|..+++.|++|+.+||||| +++++|+
T Consensus 334 ~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~Gi 412 (510)
T 2oca_A 334 KWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGI 412 (510)
T ss_dssp HHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSC
T ss_pred HHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhccc
Confidence 345555554433 3445667766 889999999999988899999999999999999999999999999999 9999999
Q ss_pred CCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 907 DVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 907 dip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
|+|++++||++++|.+..+|+||+||+||.
T Consensus 413 Dip~v~~vi~~~~~~s~~~~~Q~~GR~gR~ 442 (510)
T 2oca_A 413 SVKNLHHVVLAHGVKSKIIVLQTIGRVLRK 442 (510)
T ss_dssp CCCSEEEEEESSCCCSCCHHHHHHHHHHTT
T ss_pred ccccCcEEEEeCCCCCHHHHHHHHhccccc
Confidence 999999999999999999999999999994
No 92
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=4.3e-38 Score=369.09 Aligned_cols=287 Identities=14% Similarity=0.097 Sum_probs=213.1
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHH
Q psy7557 603 HYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTREL 682 (936)
Q Consensus 603 l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~L 682 (936)
+++.+++.|... +..|+|+|+++++.+++|+|++++||||||||++|++|++..+.. .++++||++|||+|
T Consensus 157 ~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~--------~~~~vLvl~PtreL 227 (618)
T 2whx_A 157 KSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK--------RRLRTLILAPTRVV 227 (618)
T ss_dssp -----CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------TTCCEEEEESSHHH
T ss_pred chHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh--------CCCeEEEEcChHHH
Confidence 334444444433 578999999999999999999999999999999999999987643 36799999999999
Q ss_pred HHHHHHHHHhccCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHH
Q psy7557 683 ATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEP 762 (936)
Q Consensus 683 a~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~ 762 (936)
|.|+.+.++.+ .+. ..++. ... ....+..+.++|.+.+...+... ..++++++|||||||++ +.+|..
T Consensus 228 a~Qi~~~l~~~-----~v~-~~~~~-l~~---~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~ 295 (618)
T 2whx_A 228 AAEMEEALRGL-----PIR-YQTPA-VKS---DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVA 295 (618)
T ss_dssp HHHHHHHTTTS-----CEE-ECCTT-SSC---CCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHHHH
T ss_pred HHHHHHHhcCC-----cee-Eeccc-cee---ccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccHHH
Confidence 99999888642 222 11111 000 00112356677877776655544 45889999999999998 666777
Q ss_pred HHHHHhhhcC-CCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHHHHhccCC
Q psy7557 763 QINKTSIYIN-PNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEE 841 (936)
Q Consensus 763 ~~~~i~~~~~-~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~ 841 (936)
.+..+...++ +++|+++||||++..+..+.. .++..+.+.... +. .+...+...+.. .
T Consensus 296 ~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~--------------~~-~~~~~ll~~l~~---~ 354 (618)
T 2whx_A 296 ARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI--------------PE-RSWNTGFDWITD---Y 354 (618)
T ss_dssp HHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCC--------------CS-SCCSSSCHHHHH---C
T ss_pred HHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccC--------------CH-HHHHHHHHHHHh---C
Confidence 7777777664 789999999999876443222 233333322110 00 000112222222 2
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEE-------
Q psy7557 842 RDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHV------- 914 (936)
Q Consensus 842 ~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~V------- 914 (936)
.+++||||++++.|+.++..|...+..+..+||+ +|..+++.|++|+.+|||||+++++|+|+| +++|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~ 429 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCL 429 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECccee
Confidence 5689999999999999999999999999999985 788899999999999999999999999997 9988
Q ss_pred -------------EEccCCCChhhhHhhhhhccCC
Q psy7557 915 -------------INYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 915 -------------I~~d~p~s~~~yiqr~GRaGR~ 936 (936)
|+|+.|.+..+|+||+|||||+
T Consensus 430 ~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~ 464 (618)
T 2whx_A 430 KPVILTDGPERVILAGPIPVTPASAAQRRGRIGRN 464 (618)
T ss_dssp EEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCC
T ss_pred cceecccCCCceEEcccccCCHHHHHHhccccCCC
Confidence 7888899999999999999995
No 93
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=2.6e-37 Score=357.59 Aligned_cols=294 Identities=19% Similarity=0.191 Sum_probs=223.1
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhccCCC
Q psy7557 98 TPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG 177 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~ 177 (936)
+|+|+|.+|++.+++++++++++|||+|||++|+.++... +.++||++|+++|+.|+.+.+++| +
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------------~~~~Lvl~P~~~L~~Q~~~~~~~~---~ 157 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------------STPTLIVVPTLALAEQWKERLGIF---G 157 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------------CSCEEEEESSHHHHHHHHHHGGGG---C
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------------CCCEEEEECCHHHHHHHHHHHHhC---C
Confidence 6899999999999999999999999999999999887642 457999999999999999999985 6
Q ss_pred CE-EEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHHHhhcCCCCc
Q psy7557 178 LK-AVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQ 256 (936)
Q Consensus 178 ~~-~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q 256 (936)
++ +..++|+... ..+|+|+||+++...+.. ...++++||+||||++.+.+|.. +...+ +..+
T Consensus 158 ~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~ 220 (472)
T 2fwr_A 158 EEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPF 220 (472)
T ss_dssp GGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSE
T ss_pred CcceEEECCCcCC---------cCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCChHHHH----HHHhc-CCCe
Confidence 77 7777776542 378999999998765532 12468999999999999888765 33333 4678
Q ss_pred EEEEEeccch-------------------HHHHHHHHhcCCCEEE--EeCCCCc-----------------------ccC
Q psy7557 257 TVMTSATWNK-------------------DVQRVAKKYMVNPVKV--NVGSLDL-----------------------AAT 292 (936)
Q Consensus 257 ~~~~SAT~~~-------------------~~~~~~~~~~~~~~~i--~~~~~~~-----------------------~~~ 292 (936)
++++|||++. ...++...++..+... .+..... ...
T Consensus 221 ~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 300 (472)
T 2fwr_A 221 RLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRA 300 (472)
T ss_dssp EEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCC
T ss_pred EEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccch
Confidence 9999999872 2233322223222211 1110000 000
Q ss_pred CceEEE---------------------EEEeCchhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceee
Q psy7557 293 HTVTQK---------------------IIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCS 351 (936)
Q Consensus 293 ~~~~~~---------------------~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~ 351 (936)
..+.+. ...+....|...+.+++... .+.++||||+++..++.+++.|. +..
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~k~lvF~~~~~~~~~l~~~l~-----~~~ 373 (472)
T 2fwr_A 301 EDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERH--RKDKIIIFTRHNELVYRISKVFL-----IPA 373 (472)
T ss_dssp SSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHT--SSSCBCCBCSCHHHHHHHHHHTT-----CCB
T ss_pred hhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHhC-----cce
Confidence 000000 00122345667777777763 57899999999999999999884 567
Q ss_pred ecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCc---eeEEEEecc
Q psy7557 352 LYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKS---GESITLMTR 428 (936)
Q Consensus 352 ~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~---g~~~~~~~~ 428 (936)
+||+++..+|..+++.|++|+++|||||+++++|+|+|++++||++|+|.+...|+||+||+||.|.. ...+.++++
T Consensus 374 ~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~ 453 (472)
T 2fwr_A 374 ITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 453 (472)
T ss_dssp CCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred eeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999854 345556665
Q ss_pred cC
Q psy7557 429 KD 430 (936)
Q Consensus 429 ~~ 430 (936)
+.
T Consensus 454 ~t 455 (472)
T 2fwr_A 454 GT 455 (472)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 94
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=6e-38 Score=358.39 Aligned_cols=273 Identities=15% Similarity=0.137 Sum_probs=199.1
Q ss_pred HHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhccCCCCEEEEEeCC
Q psy7557 107 WPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGG 186 (936)
Q Consensus 107 i~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg 186 (936)
...+.+|++++++||||||||++|++|++..+.. .++++||++|||+||.|+++.++.+ .+....+.
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~--------~~~~~lvl~Ptr~La~Q~~~~l~g~-----~v~~~~~~ 81 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ--------QRLRTAVLAPTRVVAAEMAEALRGL-----PVRYQTSA 81 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH--------TTCCEEEEECSHHHHHHHHHHTTTS-----CEEECC--
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh--------CCCcEEEECchHHHHHHHHHHhcCc-----eEeEEecc
Confidence 3445678999999999999999999999987752 3678999999999999999998742 22221111
Q ss_pred ccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchh-----hhcCCCHHHHHHHHhhcCCCCcEEEEE
Q psy7557 187 KEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADR-----MLDLGFEPQINKTSIYINPNRQTVMTS 261 (936)
Q Consensus 187 ~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~-----l~~~~~~~~~~~i~~~~~~~~q~~~~S 261 (936)
... ....+..+.+.|.+.+...+... ..++++++|||||||+ ++..+|..... ..++.|+++||
T Consensus 82 ~~~-----~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~-----~~~~~~~il~S 150 (459)
T 2z83_A 82 VQR-----EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATKV-----ELGEAAAIFMT 150 (459)
T ss_dssp -----------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-----HTTSCEEEEEC
T ss_pred ccc-----CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHHh-----ccCCccEEEEE
Confidence 110 01123456777887776655543 4588999999999998 45555433322 23689999999
Q ss_pred eccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHH
Q psy7557 262 ATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSD 341 (936)
Q Consensus 262 AT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~ 341 (936)
||++..+..+... ..|+....... . ..+...+...+.. ..+++||||+++..++.+++.
T Consensus 151 AT~~~~~~~~~~~--~~pi~~~~~~~---------------~-~~~~~~~~~~l~~---~~~~~LVF~~s~~~~~~l~~~ 209 (459)
T 2z83_A 151 ATPPGTTDPFPDS--NAPIHDLQDEI---------------P-DRAWSSGYEWITE---YAGKTVWFVASVKMGNEIAMC 209 (459)
T ss_dssp SSCTTCCCSSCCC--SSCEEEEECCC---------------C-SSCCSSCCHHHHH---CCSCEEEECSCHHHHHHHHHH
T ss_pred cCCCcchhhhccC--CCCeEEecccC---------------C-cchhHHHHHHHHh---cCCCEEEEeCChHHHHHHHHH
Confidence 9998664322111 23333211110 0 0000111223333 267999999999999999999
Q ss_pred hhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEE--------------------ecCCC
Q psy7557 342 LACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVIN--------------------YDFPS 401 (936)
Q Consensus 342 L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~--------------------~d~p~ 401 (936)
|...++.+..+||. +|..+++.|++|+.+|||||+++++|||+|+ ++||+ ||.|.
T Consensus 210 L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~ 284 (459)
T 2z83_A 210 LQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPI 284 (459)
T ss_dssp HHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEEC
T ss_pred HHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCC
Confidence 99999999999995 7888999999999999999999999999999 99999 77999
Q ss_pred CccccccCCCCcccCCC-ceeEEEEeccc
Q psy7557 402 HIEEYVHRVGRTGRAGK-SGESITLMTRK 429 (936)
Q Consensus 402 s~~~y~qr~GRagR~g~-~g~~~~~~~~~ 429 (936)
|..+|+||+|||||.|. .|.|++|+++.
T Consensus 285 s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 285 TSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred CHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 99999999999999997 89999999886
No 95
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=2.1e-36 Score=342.74 Aligned_cols=269 Identities=13% Similarity=0.108 Sum_probs=193.5
Q ss_pred cCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhccCCCCEEEEEeCCccchH
Q psy7557 112 SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEP 191 (936)
Q Consensus 112 ~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~ 191 (936)
+|+|++++||||||||++|++|++..+. ..+++++|++||++||.|+++.+. ++.+....|+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~--------~~g~~~lvl~Pt~~La~Q~~~~~~-----~~~v~~~~~~~~~-- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAV--------KKRLRTVILAPTRVVASEMYEALR-----GEPIRYMTPAVQS-- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHH--------HTTCCEEEEESSHHHHHHHHHHTT-----TSCEEEC--------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH--------hCCCCEEEECcHHHHHHHHHHHhC-----CCeEEEEecCccc--
Confidence 4789999999999999999999986654 246789999999999999998876 3445544443221
Q ss_pred HHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHHHhhc-CCCCcEEEEEeccchHHHH
Q psy7557 192 QLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYI-NPNRQTVMTSATWNKDVQR 270 (936)
Q Consensus 192 ~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~-~~~~q~~~~SAT~~~~~~~ 270 (936)
....+..+.+.|.+.+.+.+.. ...+++++++||||||++ +.++......+.... ++++|+++||||+++.+..
T Consensus 66 ---~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~ 140 (431)
T 2v6i_A 66 ---ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEA 140 (431)
T ss_dssp ------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCS
T ss_pred ---cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhh
Confidence 1112345667788888766655 556899999999999997 433444444444332 5689999999999864321
Q ss_pred HHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCcee
Q psy7557 271 VAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSC 350 (936)
Q Consensus 271 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~ 350 (936)
+... ..|+..... ... ..+...+...+.. ..+++||||++++.++.+++.|...+..+.
T Consensus 141 ~~~~--~~~i~~~~~---------------~~~-~~~~~~~~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~ 199 (431)
T 2v6i_A 141 FPPS--NSPIIDEET---------------RIP-DKAWNSGYEWITE---FDGRTVWFVHSIKQGAEIGTCLQKAGKKVL 199 (431)
T ss_dssp SCCC--SSCCEEEEC---------------CCC-SSCCSSCCHHHHS---CSSCEEEECSSHHHHHHHHHHHHHTTCCEE
T ss_pred hcCC--CCceeeccc---------------cCC-HHHHHHHHHHHHc---CCCCEEEEeCCHHHHHHHHHHHHHcCCeEE
Confidence 1110 111110000 000 1111122333333 367899999999999999999999999999
Q ss_pred eecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcE-----------------EEEecCCCCccccccCCCCc
Q psy7557 351 SLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTH-----------------VINYDFPSHIEEYVHRVGRT 413 (936)
Q Consensus 351 ~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~-----------------VI~~d~p~s~~~y~qr~GRa 413 (936)
.+||+ +|..+++.|++|+.+|||||+++++|+|+| +.+ ||+++.|.+..+|+||+||+
T Consensus 200 ~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~ 274 (431)
T 2v6i_A 200 YLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRI 274 (431)
T ss_dssp EESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTS
T ss_pred EeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhcc
Confidence 99997 588899999999999999999999999999 554 67899999999999999999
Q ss_pred ccCCCc-eeEEEEe
Q psy7557 414 GRAGKS-GESITLM 426 (936)
Q Consensus 414 gR~g~~-g~~~~~~ 426 (936)
||.|.. |.++++.
T Consensus 275 GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 275 GRNPEKLGDIYAYS 288 (431)
T ss_dssp SCCTTCCCCEEEEC
T ss_pred CCCCCCCCeEEEEc
Confidence 999864 5555554
No 96
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=1.1e-37 Score=367.55 Aligned_cols=272 Identities=14% Similarity=0.148 Sum_probs=196.6
Q ss_pred HHHhCCCC-----CCcHHHH-----HHHHhhh------cCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEE
Q psy7557 610 QLENLSFT-----TPSPIQA-----QAWPILM------SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSV 673 (936)
Q Consensus 610 ~l~~~g~~-----~p~~iQ~-----~ai~~~l------~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~ 673 (936)
.|...||. +|+|+|. ++||.++ +|+|++++||||||||++|++|++..+.. .++++
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~--------~~~~~ 273 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ--------KRLRT 273 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH--------TTCCE
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCcE
Confidence 34556776 8999999 9999988 89999999999999999999999977642 46789
Q ss_pred EEEecCHHHHHHHHHHHHhccCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHH---------HHHHHcCCCCCCCc
Q psy7557 674 LVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRL---------NDFVSRASIDLKAV 744 (936)
Q Consensus 674 lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l---------~~~l~~~~~~~~~i 744 (936)
||++||++||.|+++.++.+. +. ...+. +. .++||+++ ...+.. ...++++
T Consensus 274 lilaPTr~La~Q~~~~l~~~~---i~--~~~~~---------l~-----~v~tp~~ll~~l~~~~l~~~l~~-~~~l~~l 333 (673)
T 2wv9_A 274 AVLAPTRVVAAEMAEALRGLP---VR--YLTPA---------VQ-----REHSGNEIVDVMCHATLTHRLMS-PLRVPNY 333 (673)
T ss_dssp EEEESSHHHHHHHHHHTTTSC---CE--ECCC-----------------CCCCSCCCEEEEEHHHHHHHHHS-SSCCCCC
T ss_pred EEEccHHHHHHHHHHHHhcCC---ee--eeccc---------cc-----ccCCHHHHHHHHHhhhhHHHHhc-ccccccc
Confidence 999999999999999988652 21 11110 00 14555544 332322 2468999
Q ss_pred eEEEEcccchhccCCCHHHHHHHhhhc-CCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcC
Q psy7557 745 SFVVLDEADRMLDLGFEPQINKTSIYI-NPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD 823 (936)
Q Consensus 745 ~~lViDEah~l~~~~~~~~~~~i~~~~-~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 823 (936)
++|||||||++ +.++...+..+.... ++.+|+++||||+++.+..+... ..|+...... ..
T Consensus 334 ~lvViDEaH~~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i~~v~~~---------------~~ 395 (673)
T 2wv9_A 334 NLFVMDEAHFT-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPVHDVSSE---------------IP 395 (673)
T ss_dssp SEEEEESTTCC-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCEEEEECC---------------CC
T ss_pred eEEEEeCCccc-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCceEEEeee---------------cC
Confidence 99999999997 222223333343333 36789999999998654322111 1122111100 01
Q ss_pred cchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCc
Q psy7557 824 EDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 903 (936)
Q Consensus 824 ~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~ 903 (936)
...... ++..+. ...+++||||++++.++.++..|...+..+..+||+ +|..+++.|++|+.+|||||++++
T Consensus 396 ~~~~~~-~l~~l~---~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e 467 (673)
T 2wv9_A 396 DRAWSS-GFEWIT---DYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISE 467 (673)
T ss_dssp SSCCSS-CCHHHH---SCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGG
T ss_pred HHHHHH-HHHHHH---hCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhh
Confidence 111111 112222 246799999999999999999999999999999994 799999999999999999999999
Q ss_pred cCCCCCCCCEEEE--------------------ccCCCChhhhHhhhhhccCC
Q psy7557 904 RGLDVPDLTHVIN--------------------YDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 904 ~Gidip~v~~VI~--------------------~d~p~s~~~yiqr~GRaGR~ 936 (936)
+|||+| +++||+ ||+|.+..+|+||+||+||+
T Consensus 468 ~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~ 519 (673)
T 2wv9_A 468 MGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRN 519 (673)
T ss_dssp TTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCC
T ss_pred cceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCC
Confidence 999999 999998 67899999999999999995
No 97
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1.6e-35 Score=356.21 Aligned_cols=322 Identities=18% Similarity=0.234 Sum_probs=232.1
Q ss_pred CcCChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhc-CCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCC
Q psy7557 593 PVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMS-GHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGP 671 (936)
Q Consensus 593 ~~~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~-g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~ 671 (936)
++.+|.+ +++++.+.+.+...+ ..|+++|.++|+.++. +++++++||||||||+ ++|++...... ..+.++
T Consensus 70 ~~~~f~~-~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~----~~~~g~ 141 (773)
T 2xau_A 70 KINPFTG-REFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEM----PHLENT 141 (773)
T ss_dssp SBCTTTC-SBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHC----GGGGTC
T ss_pred CCCCccc-cCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhcc----ccCCCc
Confidence 4456666 688999999999988 6999999999998875 5689999999999999 56666332111 112367
Q ss_pred EEEEEecCHHHHHHHHHHHHhccCCCCEEEEEECCc-cchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEc
Q psy7557 672 SVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGK-ELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLD 750 (936)
Q Consensus 672 ~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~-~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViD 750 (936)
+++|++|+++||.|+.+.+.... +..+...+|+. .... ....+.+|+|+|||++.+.+... ..+.++++||||
T Consensus 142 ~ilvl~P~r~La~q~~~~l~~~~--~~~v~~~vG~~i~~~~---~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlD 215 (773)
T 2xau_A 142 QVACTQPRRVAAMSVAQRVAEEM--DVKLGEEVGYSIRFEN---KTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILD 215 (773)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHT--TCCBTTTEEEEETTEE---ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEEC
T ss_pred eEEecCchHHHHHHHHHHHHHHh--CCchhheecceecccc---ccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEec
Confidence 89999999999999998876542 22221112211 0000 01135789999999999877664 358999999999
Q ss_pred ccch-hccCCC-HHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhH
Q psy7557 751 EADR-MLDLGF-EPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKK 828 (936)
Q Consensus 751 Eah~-l~~~~~-~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~ 828 (936)
|+|. .++..+ ...+..+.. ..++.|++++|||++. ..+...+...| .+.+.... ..+...+.........
T Consensus 216 Eah~R~ld~d~~~~~l~~l~~-~~~~~~iIl~SAT~~~--~~l~~~~~~~~-vi~v~gr~----~pv~~~~~~~~~~~~~ 287 (773)
T 2xau_A 216 EAHERTLATDILMGLLKQVVK-RRPDLKIIIMSATLDA--EKFQRYFNDAP-LLAVPGRT----YPVELYYTPEFQRDYL 287 (773)
T ss_dssp SGGGCCHHHHHHHHHHHHHHH-HCTTCEEEEEESCSCC--HHHHHHTTSCC-EEECCCCC----CCEEEECCSSCCSCHH
T ss_pred CccccccchHHHHHHHHHHHH-hCCCceEEEEeccccH--HHHHHHhcCCC-cccccCcc----cceEEEEecCCchhHH
Confidence 9995 555332 233333433 3468899999999964 44555544344 34443322 2344333333333333
Q ss_pred HHHHHH-HHhc-cCCCCcEEEEcCChHHHHHHHHHHHh-----------cCCceEEEeCCCCHHHHHHHHHHhh-----c
Q psy7557 829 DWLMEF-FDNM-DEERDKVMVFMGRKASVSAMSSDLAC-----------QYRKSCSLYGDLSQEDREIALEDIT-----S 890 (936)
Q Consensus 829 ~~l~~~-l~~~-~~~~~~~iIF~~s~~~~~~l~~~L~~-----------~~~~~~~~h~~l~~~~R~~~~~~F~-----~ 890 (936)
...... +... ....+++||||+++..++.++..|.. .+..+..+||+|++++|..+++.|+ +
T Consensus 288 ~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~ 367 (773)
T 2xau_A 288 DSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGR 367 (773)
T ss_dssp HHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSS
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCC
Confidence 222222 2211 12468999999999999999999975 4667899999999999999999999 9
Q ss_pred CCCcEEEecccCccCCCCCCCCEEEEccC------------------CCChhhhHhhhhhccCC
Q psy7557 891 GYARICVATDVASRGLDVPDLTHVINYDF------------------PSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 891 g~~~vLVaT~~~~~Gidip~v~~VI~~d~------------------p~s~~~yiqr~GRaGR~ 936 (936)
|..+|||||+++++|||+|+|++||++|+ |.|..+|+||+|||||.
T Consensus 368 g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~ 431 (773)
T 2xau_A 368 PGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT 431 (773)
T ss_dssp CCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS
T ss_pred CceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC
Confidence 99999999999999999999999999888 88999999999999994
No 98
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=4.5e-36 Score=347.19 Aligned_cols=280 Identities=19% Similarity=0.186 Sum_probs=214.5
Q ss_pred CCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhccCCC
Q psy7557 618 TPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG 697 (936)
Q Consensus 618 ~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~ 697 (936)
.|+|+|.++++.++.++++++++|||+|||++|+.++... +.++||++|+++|+.|+.+.+.++ +
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------------~~~~Lvl~P~~~L~~Q~~~~~~~~---~ 157 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------------STPTLIVVPTLALAEQWKERLGIF---G 157 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------------CSCEEEEESSHHHHHHHHHHGGGG---C
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------------CCCEEEEECCHHHHHHHHHHHHhC---C
Confidence 6899999999999999999999999999999999887632 467999999999999999999985 6
Q ss_pred CE-EEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHHHhhhcCCCce
Q psy7557 698 LK-AVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQ 776 (936)
Q Consensus 698 ~~-~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q 776 (936)
++ +..++|+... .++|+|+||+.+...+... .+++++||+||||++...+|.. +...+ +..+
T Consensus 158 ~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~ 220 (472)
T 2fwr_A 158 EEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPF 220 (472)
T ss_dssp GGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSE
T ss_pred CcceEEECCCcCC---------cCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCChHHHH----HHHhc-CCCe
Confidence 67 7777776543 3789999999987655421 2468999999999998887764 33333 4678
Q ss_pred EEEEEecCCh-------------------HHHHHHHHhcCCCeE--EEeCCCCc-----------------------ccC
Q psy7557 777 TVMTSATWNK-------------------DVQRVAKKYMVNPVK--VNVGSLDL-----------------------AAT 812 (936)
Q Consensus 777 ~v~~SAT~~~-------------------~~~~~~~~~~~~~~~--i~~~~~~~-----------------------~~~ 812 (936)
++++|||++. ....+...++.++.. +.+..... ...
T Consensus 221 ~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 300 (472)
T 2fwr_A 221 RLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRA 300 (472)
T ss_dssp EEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCC
T ss_pred EEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccch
Confidence 9999999862 122232222222211 11110000 000
Q ss_pred CceEEE---------------------EEEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEE
Q psy7557 813 HTVTQK---------------------IIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCS 871 (936)
Q Consensus 813 ~~~~~~---------------------~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~ 871 (936)
..+.+. ...+....|...+.+++... ...++||||+++..++.++..|. +..
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~k~lvF~~~~~~~~~l~~~l~-----~~~ 373 (472)
T 2fwr_A 301 EDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERH--RKDKIIIFTRHNELVYRISKVFL-----IPA 373 (472)
T ss_dssp SSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHT--SSSCBCCBCSCHHHHHHHHHHTT-----CCB
T ss_pred hhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHhC-----cce
Confidence 000000 00123345667777777763 56799999999999999999873 667
Q ss_pred EeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 872 LYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 872 ~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++|.|.+...|+||+||+||.
T Consensus 374 ~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~ 438 (472)
T 2fwr_A 374 ITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRP 438 (472)
T ss_dssp CCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCC
T ss_pred eeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999995
No 99
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=2.3e-36 Score=349.67 Aligned_cols=262 Identities=19% Similarity=0.178 Sum_probs=199.6
Q ss_pred CcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhccCCCC
Q psy7557 619 PSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGL 698 (936)
Q Consensus 619 p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 698 (936)
+.++|..+++.+..++|++++||||||||++|.+|++. .+.++||++|||+||.|+++.+.+.. +.
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~------------~g~~vLVl~PTReLA~Qia~~l~~~~--g~ 283 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA------------QGYKVLVLNPSVAATLGFGAYMSKAH--GI 283 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH------------TTCCEEEEESCHHHHHHHHHHHHHHH--SC
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH------------CCCeEEEEcchHHHHHHHHHHHHHHh--CC
Confidence 34555555566668889999999999999999998873 35689999999999999999887643 34
Q ss_pred EEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHHHhhhcCCCce--
Q psy7557 699 KAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQ-- 776 (936)
Q Consensus 699 ~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q-- 776 (936)
.+...+|+.. +..+++|+|+||++| +....+.++++++||||||| +++.+|...+..+...++...|
T Consensus 284 ~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~~~~l 352 (666)
T 3o8b_A 284 DPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETAGARL 352 (666)
T ss_dssp CCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTTTCSE
T ss_pred CeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhcCCce
Confidence 4566677654 345689999999997 45667778899999999996 5677788888888888877666
Q ss_pred EEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHHHH
Q psy7557 777 TVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVS 856 (936)
Q Consensus 777 ~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~ 856 (936)
++++|||++..+. ...|....+... ....+ ........ +.. ...+++||||++++.++
T Consensus 353 lil~SAT~~~~i~------~~~p~i~~v~~~---~~~~i----~~~~~~~~-------l~~--~~~~~vLVFv~Tr~~ae 410 (666)
T 3o8b_A 353 VVLATATPPGSVT------VPHPNIEEVALS---NTGEI----PFYGKAIP-------IEA--IRGGRHLIFCHSKKKCD 410 (666)
T ss_dssp EEEEESSCTTCCC------CCCTTEEEEECB---SCSSE----EETTEEEC-------GGG--SSSSEEEEECSCHHHHH
T ss_pred EEEECCCCCcccc------cCCcceEEEeec---ccchh----HHHHhhhh-------hhh--ccCCcEEEEeCCHHHHH
Confidence 7788999986321 112211111000 00001 11111100 111 24679999999999999
Q ss_pred HHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEE----------Ecc--------
Q psy7557 857 AMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVI----------NYD-------- 918 (936)
Q Consensus 857 ~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI----------~~d-------- 918 (936)
.++..|...++.+..+||+|++++ |+++..+|||||+++++|||+| +++|| |||
T Consensus 411 ~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~ 482 (666)
T 3o8b_A 411 ELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIE 482 (666)
T ss_dssp HHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEE
T ss_pred HHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccc
Confidence 999999999999999999999875 5567779999999999999997 99988 677
Q ss_pred ---CCCChhhhHhhhhhccC
Q psy7557 919 ---FPSHIEEYVHRVGRTGE 935 (936)
Q Consensus 919 ---~p~s~~~yiqr~GRaGR 935 (936)
.|.+.++|+||+|||||
T Consensus 483 ~~~~P~s~~syiQRiGRtGR 502 (666)
T 3o8b_A 483 TTTVPQDAVSRSQRRGRTGR 502 (666)
T ss_dssp EEEEECBHHHHHHHHTTBCS
T ss_pred cccCcCCHHHHHHHhccCCC
Confidence 89999999999999999
No 100
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=5.1e-37 Score=348.40 Aligned_cols=254 Identities=16% Similarity=0.157 Sum_probs=178.3
Q ss_pred hhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhccCCCCEEEEEECCcc
Q psy7557 629 ILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKE 708 (936)
Q Consensus 629 ~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~ 708 (936)
.+++|+|++++||||||||++|++|++..+.. .+++++|++||++||.|+++.++.+. +... ++.
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~--------~~~~~lil~Ptr~La~Q~~~~l~~~~-----v~~~-~~~- 68 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR--------RRLRTLVLAPTRVVLSEMKEAFHGLD-----VKFH-TQA- 68 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTTSC-----EEEE-SSC-
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh--------cCCeEEEEcchHHHHHHHHHHHhcCC-----eEEe-ccc-
Confidence 45789999999999999999999999976642 36799999999999999999987542 2211 111
Q ss_pred chHHHHHHhcCceEEEeCchHHHHHHHc--------CCCCCCCceEEEEcccchhccCCCHHHHHHHhhhc-CCCceEEE
Q psy7557 709 LEPQLEKIREGCHILIATPGRLNDFVSR--------ASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYI-NPNRQTVM 779 (936)
Q Consensus 709 ~~~~~~~l~~~~~IiV~Tp~~l~~~l~~--------~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~-~~~~q~v~ 779 (936)
. -.|+||+++.+++.+ ....++++++|||||||++ +.++...+..+.... +++.|+++
T Consensus 69 ~------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~ 135 (440)
T 1yks_A 69 F------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATIL 135 (440)
T ss_dssp C------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEE
T ss_pred c------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEE
Confidence 0 037888766533322 2334889999999999998 333333333333333 46799999
Q ss_pred EEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHH
Q psy7557 780 TSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMS 859 (936)
Q Consensus 780 ~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~ 859 (936)
||||+++.+..+... ..++..... .+....... +...+.. ..+++||||++++.++.++
T Consensus 136 ~SAT~~~~~~~~~~~--~~~~~~~~~---------------~~~~~~~~~-~~~~l~~---~~~~~lVF~~s~~~a~~l~ 194 (440)
T 1yks_A 136 MTATPPGTSDEFPHS--NGEIEDVQT---------------DIPSEPWNT-GHDWILA---DKRPTAWFLPSIRAANVMA 194 (440)
T ss_dssp ECSSCTTCCCSSCCC--SSCEEEEEC---------------CCCSSCCSS-SCHHHHH---CCSCEEEECSCHHHHHHHH
T ss_pred EeCCCCchhhhhhhc--CCCeeEeee---------------ccChHHHHH-HHHHHHh---cCCCEEEEeCCHHHHHHHH
Confidence 999998764432221 112111110 011111111 1122222 2578999999999999999
Q ss_pred HHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEE-------------------ccCC
Q psy7557 860 SDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVIN-------------------YDFP 920 (936)
Q Consensus 860 ~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~-------------------~d~p 920 (936)
..|...+..+..+|| ++|..+++.|++|+.+|||||+++++|+|+| +++||+ |+.|
T Consensus 195 ~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p 269 (440)
T 1yks_A 195 ASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLR 269 (440)
T ss_dssp HHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEE
T ss_pred HHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccc
Confidence 999999999999999 4688999999999999999999999999999 999996 8999
Q ss_pred CChhhhHhhhhhccCC
Q psy7557 921 SHIEEYVHRVGRTGEF 936 (936)
Q Consensus 921 ~s~~~yiqr~GRaGR~ 936 (936)
.+..+|+||+||+||+
T Consensus 270 ~~~~~~~Qr~GR~GR~ 285 (440)
T 1yks_A 270 ISASSAAQRRGRIGRN 285 (440)
T ss_dssp CCHHHHHHHHTTSSCC
T ss_pred cCHHHHHHhccccCCC
Confidence 9999999999999994
No 101
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=311.06 Aligned_cols=204 Identities=31% Similarity=0.478 Sum_probs=182.3
Q ss_pred CcccChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcC--CcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCC
Q psy7557 72 NPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSG--HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERA 149 (936)
Q Consensus 72 ~p~~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g--~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~ 149 (936)
.++.+|++ +++++.++++|..+||.+|||+|.++||.+++| +|++++||||||||++|++|++.++... ..
T Consensus 89 ~~~~~f~~-l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~------~~ 161 (300)
T 3fmo_B 89 YSVKSFEE-LRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA------NK 161 (300)
T ss_dssp CCCCCSGG-GTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT------SC
T ss_pred CCcCCHhh-cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc------CC
Confidence 45778988 699999999999999999999999999999987 9999999999999999999999887432 45
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHhccC--CCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHc-CCcCCCCceE
Q psy7557 150 GPSVLVMAPTRELATQIEREVNKIDY--KGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSR-ASIDLKAVSF 226 (936)
Q Consensus 150 ~~~~lil~Pt~~La~Q~~~~~~~~~~--~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~~~ 226 (936)
++++||++|||+||.|+++.++.+.. .++.+...+||....... ..+++|+|+||++|.+++.+ +.+.++++++
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~ 238 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKV 238 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSE
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceE
Confidence 77999999999999999999999753 478888888887654332 45689999999999999966 5677899999
Q ss_pred EEEccchhhhc-CCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeC
Q psy7557 227 VVLDEADRMLD-LGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVG 285 (936)
Q Consensus 227 lViDEah~l~~-~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~ 285 (936)
|||||||+|++ .+|...+..+...+++++|+++||||++..+..++..++.+|..|.+.
T Consensus 239 lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 239 FVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp EEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred EEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 99999999998 789999999999999999999999999999999999999999988764
No 102
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=6.9e-35 Score=342.29 Aligned_cols=275 Identities=20% Similarity=0.210 Sum_probs=205.8
Q ss_pred HHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhccCCCCEEEEEeCC
Q psy7557 107 WPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGG 186 (936)
Q Consensus 107 i~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg 186 (936)
....++|++++++||||||||+. ++..+.. .+..+|++|||+||.|+++.++++ ++++..++|+
T Consensus 149 ~ar~l~rk~vlv~apTGSGKT~~----al~~l~~---------~~~gl~l~PtR~LA~Qi~~~l~~~---g~~v~lltG~ 212 (677)
T 3rc3_A 149 DARAMQRKIIFHSGPTNSGKTYH----AIQKYFS---------AKSGVYCGPLKLLAHEIFEKSNAA---GVPCDLVTGE 212 (677)
T ss_dssp HHHTSCCEEEEEECCTTSSHHHH----HHHHHHH---------SSSEEEEESSHHHHHHHHHHHHHT---TCCEEEECSS
T ss_pred HHHhcCCCEEEEEcCCCCCHHHH----HHHHHHh---------cCCeEEEeCHHHHHHHHHHHHHhc---CCcEEEEECC
Confidence 34557889999999999999983 3333322 123599999999999999999885 7788888888
Q ss_pred ccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHHHhhcC-CCCcEEEEEeccc
Q psy7557 187 KEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYIN-PNRQTVMTSATWN 265 (936)
Q Consensus 187 ~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~-~~~q~~~~SAT~~ 265 (936)
...... ......+++++|++.+. ....++++||||||++++.+|...+..++..++ +..+++++|||.+
T Consensus 213 ~~~iv~--TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~ 282 (677)
T 3rc3_A 213 ERVTVQ--PNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAID 282 (677)
T ss_dssp CEECCS--TTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHH
T ss_pred eeEEec--CCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHH
Confidence 554100 00011456666665541 246789999999999999999999998888887 7789999999953
Q ss_pred hHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhc
Q psy7557 266 KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQ 345 (936)
Q Consensus 266 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~ 345 (936)
.+..+.... .....+..... ...... .... ...+... ....+|||++++.++.+++.|...
T Consensus 283 -~i~~l~~~~-~~~~~v~~~~r----~~~l~~----~~~~------l~~l~~~---~~g~iIf~~s~~~ie~la~~L~~~ 343 (677)
T 3rc3_A 283 -LVMELMYTT-GEEVEVRDYKR----LTPISV----LDHA------LESLDNL---RPGDCIVCFSKNDIYSVSRQIEIR 343 (677)
T ss_dssp -HHHHHHHHH-TCCEEEEECCC----SSCEEE----CSSC------CCSGGGC---CTTEEEECSSHHHHHHHHHHHHHT
T ss_pred -HHHHHHHhc-CCceEEEEeee----cchHHH----HHHH------HHHHHhc---CCCCEEEEcCHHHHHHHHHHHHhc
Confidence 455555443 33433322111 111110 0000 0111122 345689999999999999999999
Q ss_pred CCceeeecCCCCHHHHHHHHHHhhc--CCcEEEEEecccccCCCCCCCcEEEEecC--------------CCCccccccC
Q psy7557 346 YRKSCSLYGDLSQEDREIALEDITS--GYARICVATDVASRGLDVPDLTHVINYDF--------------PSHIEEYVHR 409 (936)
Q Consensus 346 ~~~~~~~h~~~~~~~R~~~~~~f~~--g~~~vLvaT~~~~~GiDip~v~~VI~~d~--------------p~s~~~y~qr 409 (936)
++.+..+||+|++.+|..+++.|++ |.++|||||+++++|||+ ++++||++|+ |.+..+|+||
T Consensus 344 g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR 422 (677)
T 3rc3_A 344 GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQI 422 (677)
T ss_dssp TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHH
T ss_pred CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHH
Confidence 9999999999999999999999999 999999999999999999 8999999999 7799999999
Q ss_pred CCCcccCCCc---eeEEEEec
Q psy7557 410 VGRTGRAGKS---GESITLMT 427 (936)
Q Consensus 410 ~GRagR~g~~---g~~~~~~~ 427 (936)
+|||||.|.. |.++.+..
T Consensus 423 ~GRAGR~g~~g~~G~v~~l~~ 443 (677)
T 3rc3_A 423 AGRAGRFSSRFKEGEVTTMNH 443 (677)
T ss_dssp HTTBTCTTSSCSSEEEEESST
T ss_pred hcCCCCCCCCCCCEEEEEEec
Confidence 9999999965 66655543
No 103
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=8.3e-35 Score=345.59 Aligned_cols=314 Identities=16% Similarity=0.185 Sum_probs=192.8
Q ss_pred CCcHHHHHHHHHHhc----C-CcEEEEecCCCCcchhchHHHHHHhhcCC-CCCCCCCCCEEEEEcCcHHHHHHHH-HHH
Q psy7557 98 TPSPIQAQAWPILMS----G-HDMIGIAQTGTGKTFAFLLPALIHTHLQT-TPISERAGPSVLVMAPTRELATQIE-REV 170 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~~----g-~d~l~~apTGsGKT~~~~lp~l~~~~~~~-~~~~~~~~~~~lil~Pt~~La~Q~~-~~~ 170 (936)
.|+|+|.+|++.++. | +++++++|||||||++++.. +..+.... .......++++|||+||++|+.|+. +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~-~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQI-SWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHH-HHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHH-HHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 799999999998875 4 56999999999999996554 43333221 1111225789999999999999999 777
Q ss_pred HhccCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHc----CCcCCCCceEEEEccchhhhcCCCHHHHHH
Q psy7557 171 NKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSR----ASIDLKAVSFVVLDEADRMLDLGFEPQINK 246 (936)
Q Consensus 171 ~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~----~~~~~~~~~~lViDEah~l~~~~~~~~~~~ 246 (936)
+.+. ..+..+.++. ...+.+|+|+||++|...+.. ..+....+++||+||||++...+ ...+..
T Consensus 257 ~~~~---~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~ 324 (590)
T 3h1t_A 257 TPFG---DARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWRE 324 (590)
T ss_dssp TTTC---SSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHH
T ss_pred Hhcc---hhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHH
Confidence 7653 2333333321 234589999999999877642 23456779999999999987642 234455
Q ss_pred HHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEE-----------------EEeCCCCcccC-------------CceE
Q psy7557 247 TSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVK-----------------VNVGSLDLAAT-------------HTVT 296 (936)
Q Consensus 247 i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~-----------------i~~~~~~~~~~-------------~~~~ 296 (936)
++..++ ..++++||||+..........++..++. +.......... ..+.
T Consensus 325 il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (590)
T 3h1t_A 325 ILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIP 403 (590)
T ss_dssp HHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC------------------
T ss_pred HHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccc
Confidence 555554 4789999999874332222222322221 11000000000 0000
Q ss_pred EEEEEeCc-------hhhHHH----HHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCc--------eeeecCCCC
Q psy7557 297 QKIIILDE-------DEKKDW----LMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRK--------SCSLYGDLS 357 (936)
Q Consensus 297 ~~~~~~~~-------~~k~~~----l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~--------~~~~h~~~~ 357 (936)
........ ..+... +.+.+... ...+++||||+++..|+.+++.|...+.. +..+||+++
T Consensus 404 ~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~-~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~ 482 (590)
T 3h1t_A 404 DGEYQTKDFERVIALKARTDAFAKHLTDFMKRT-DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG 482 (590)
T ss_dssp -----CCSHHHHHHHHHTHHHHHHHHHHHHHHH-CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH
T ss_pred cccCCHHHhhhHhcChHHHHHHHHHHHHHHHhc-CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh
Confidence 00000000 111122 22333332 45689999999999999999999876432 667899876
Q ss_pred HHHHHHHHHHhhcCCcE---EEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccCCC--ceeEEEEec
Q psy7557 358 QEDREIALEDITSGYAR---ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGK--SGESITLMT 427 (936)
Q Consensus 358 ~~~R~~~~~~f~~g~~~---vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~--~g~~~~~~~ 427 (936)
+ +|..+++.|++|+.+ |||||+++++|+|+|++++||++++|.|...|+||+||+||.|. .+..+++++
T Consensus 483 ~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D 556 (590)
T 3h1t_A 483 K-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIID 556 (590)
T ss_dssp H-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEE
T ss_pred H-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEe
Confidence 4 799999999998876 89999999999999999999999999999999999999999875 344444444
No 104
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=3.5e-34 Score=298.47 Aligned_cols=211 Identities=35% Similarity=0.521 Sum_probs=178.0
Q ss_pred CCCCCcccChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCC
Q psy7557 68 FQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISE 147 (936)
Q Consensus 68 ~~~p~p~~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~ 147 (936)
.+.|.++.+|++ +++++.++++|.+.||..|+|+|.++++.+++|+|++++||||||||++|++|++..+...
T Consensus 23 ~~~~~~~~~f~~-l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~------ 95 (237)
T 3bor_A 23 SNWNEIVDNFDD-MNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE------ 95 (237)
T ss_dssp ----CCCCSGGG-SCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT------
T ss_pred CCCCCccCChhh-cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc------
Confidence 356788899998 6999999999999999999999999999999999999999999999999999999876421
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHhcc-CCCCEEEEEeCCccchHHHHHhhcC-CcEEEeCCchhHHHHHcCCcCCCCce
Q psy7557 148 RAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREG-CHILIATPGRLNDFVSRASIDLKAVS 225 (936)
Q Consensus 148 ~~~~~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~~~ 225 (936)
..++++||++||++|+.|+++.++++. ..++.+..++||.....+...+..+ ++|+|+||+++.+.+.++...+++++
T Consensus 96 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~ 175 (237)
T 3bor_A 96 FKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIK 175 (237)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCC
T ss_pred CCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCc
Confidence 346789999999999999999999975 4578889999998887777777666 89999999999999988888899999
Q ss_pred EEEEccchhhhcCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeC
Q psy7557 226 FVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVG 285 (936)
Q Consensus 226 ~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~ 285 (936)
++|+||||++.+++|...+..+...+++..|++++|||+|+.+.++++.++.+|+.+.++
T Consensus 176 ~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 176 MFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp EEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred EEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 999999999999999999999999999999999999999999999999999999887653
No 105
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=2.8e-34 Score=325.31 Aligned_cols=259 Identities=12% Similarity=0.090 Sum_probs=186.6
Q ss_pred cCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhccCCCCEEEEEECCccchH
Q psy7557 632 SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEP 711 (936)
Q Consensus 632 ~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~ 711 (936)
+|+|++++||||||||++|++|++..+.. .+++++|++||++||.|+++.+. +..+....|+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~--------~g~~~lvl~Pt~~La~Q~~~~~~-----~~~v~~~~~~~~~-- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK--------KRLRTVILAPTRVVASEMYEALR-----GEPIRYMTPAVQS-- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTT-----TSCEEEC--------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh--------CCCCEEEECcHHHHHHHHHHHhC-----CCeEEEEecCccc--
Confidence 47899999999999999999999866542 46799999999999999998876 3444444443211
Q ss_pred HHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHHHhhhc-CCCceEEEEEecCChHHHH
Q psy7557 712 QLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYI-NPNRQTVMTSATWNKDVQR 790 (936)
Q Consensus 712 ~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~-~~~~q~v~~SAT~~~~~~~ 790 (936)
.-..+.-+.+.|.+.+...+.. ...++++++|||||||++ +.++......+.... ++++|+++||||+++.+..
T Consensus 66 ---~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~ 140 (431)
T 2v6i_A 66 ---ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEA 140 (431)
T ss_dssp ------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCS
T ss_pred ---cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhh
Confidence 1112345667788888766655 456899999999999997 433344444444432 5789999999999864322
Q ss_pred HHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceE
Q psy7557 791 VAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSC 870 (936)
Q Consensus 791 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~ 870 (936)
+... ..|+...... ... .+...+...+.. ..+++||||++++.++.++..|...+..+.
T Consensus 141 ~~~~--~~~i~~~~~~---------------~~~-~~~~~~~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~ 199 (431)
T 2v6i_A 141 FPPS--NSPIIDEETR---------------IPD-KAWNSGYEWITE---FDGRTVWFVHSIKQGAEIGTCLQKAGKKVL 199 (431)
T ss_dssp SCCC--SSCCEEEECC---------------CCS-SCCSSCCHHHHS---CSSCEEEECSSHHHHHHHHHHHHHTTCCEE
T ss_pred hcCC--CCceeecccc---------------CCH-HHHHHHHHHHHc---CCCCEEEEeCCHHHHHHHHHHHHHcCCeEE
Confidence 1110 1111110000 000 111112233333 356899999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCE-----------------EEEccCCCChhhhHhhhhhc
Q psy7557 871 SLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTH-----------------VINYDFPSHIEEYVHRVGRT 933 (936)
Q Consensus 871 ~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~-----------------VI~~d~p~s~~~yiqr~GRa 933 (936)
.+||+ +|..+++.|++|+.+|||||+++++|+|+| +.+ ||+++.|.+..+|+||+||+
T Consensus 200 ~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~ 274 (431)
T 2v6i_A 200 YLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRI 274 (431)
T ss_dssp EESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTS
T ss_pred EeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhcc
Confidence 99997 578899999999999999999999999999 655 67889999999999999999
Q ss_pred cCC
Q psy7557 934 GEF 936 (936)
Q Consensus 934 GR~ 936 (936)
||.
T Consensus 275 GR~ 277 (431)
T 2v6i_A 275 GRN 277 (431)
T ss_dssp SCC
T ss_pred CCC
Confidence 995
No 106
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=8.4e-34 Score=297.23 Aligned_cols=208 Identities=36% Similarity=0.558 Sum_probs=189.2
Q ss_pred CCcccChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCC
Q psy7557 71 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAG 150 (936)
Q Consensus 71 p~p~~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~ 150 (936)
+.+..+|++ +++++.++++|.++||..|+|+|.++++.+++|+|++++||||||||++|++|++..+... ..+
T Consensus 39 ~~~~~~f~~-l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~------~~~ 111 (249)
T 3ber_A 39 EEETKTFKD-LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET------PQR 111 (249)
T ss_dssp HHHHCCTGG-GTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS------CCS
T ss_pred ccccCCHHH-cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC------CCC
Confidence 456778988 6999999999999999999999999999999999999999999999999999999877542 346
Q ss_pred CEEEEEcCcHHHHHHHHHHHHhcc-CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHc-CCcCCCCceEEE
Q psy7557 151 PSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSR-ASIDLKAVSFVV 228 (936)
Q Consensus 151 ~~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~~~lV 228 (936)
+++||++||++|+.|+++.++++. ..++++..++||.....+...+..+++|+|+||+++.+.+.+ +.+.+++++++|
T Consensus 112 ~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lV 191 (249)
T 3ber_A 112 LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLV 191 (249)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEE
Confidence 789999999999999999999874 458899999999988888777888899999999999998876 456789999999
Q ss_pred EccchhhhcCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeC
Q psy7557 229 LDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVG 285 (936)
Q Consensus 229 iDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~ 285 (936)
+||||++.+++|...+..+...+++++|+++||||+++.+.++++.++.+|+.+.++
T Consensus 192 iDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 192 MDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp ECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred EcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 999999999999999999999999999999999999999999999999999988654
No 107
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=5.6e-34 Score=300.49 Aligned_cols=216 Identities=42% Similarity=0.693 Sum_probs=190.1
Q ss_pred CcccChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCC---CCCC
Q psy7557 72 NPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTP---ISER 148 (936)
Q Consensus 72 ~p~~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~---~~~~ 148 (936)
.|+.+|++ +++++.++++|...||.+|+|+|.++++.+++|+|++++||||||||++|++|++..+...... ....
T Consensus 20 ~~~~~f~~-l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~ 98 (253)
T 1wrb_A 20 NVIENFDE-LKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKT 98 (253)
T ss_dssp SCCCSSGG-GSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CC
T ss_pred CccCCHhh-CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhcccccccccc
Confidence 38889998 6899999999999999999999999999999999999999999999999999999887643211 0123
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHhcc-CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEE
Q psy7557 149 AGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFV 227 (936)
Q Consensus 149 ~~~~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~l 227 (936)
.++++||++||++|+.|+++.++++. ..++++..++||.....+...+..+++|+|+||++|.+++..+...+++++++
T Consensus 99 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~l 178 (253)
T 1wrb_A 99 AYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYI 178 (253)
T ss_dssp BCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEE
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEE
Confidence 45799999999999999999999974 45788999999999888888888889999999999999999888889999999
Q ss_pred EEccchhhhcCCCHHHHHHHHhhc--CC--CCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCC
Q psy7557 228 VLDEADRMLDLGFEPQINKTSIYI--NP--NRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLD 288 (936)
Q Consensus 228 ViDEah~l~~~~~~~~~~~i~~~~--~~--~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~ 288 (936)
|+||||++++++|...+..++..+ +. ++|+++||||+++.+..+++.++.+|..+.++..+
T Consensus 179 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~ 243 (253)
T 1wrb_A 179 VLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVG 243 (253)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC---
T ss_pred EEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCC
Confidence 999999999999999999998853 33 68999999999999999999999999999887654
No 108
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=1.4e-33 Score=292.68 Aligned_cols=208 Identities=30% Similarity=0.509 Sum_probs=182.6
Q ss_pred CCCCcccChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCC
Q psy7557 69 QIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISER 148 (936)
Q Consensus 69 ~~p~p~~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~ 148 (936)
..|.+..+|++ +++++.+++.|.+.||.+|+|+|.++++.+++|+|+++++|||||||++|++|++..+... .
T Consensus 18 ~~~~~~~~f~~-l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~------~ 90 (230)
T 2oxc_A 18 VLLAEPADFES-LLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE------N 90 (230)
T ss_dssp ------CCGGG-GTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT------S
T ss_pred CCCCCCCCHhh-cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc------C
Confidence 46778889998 6899999999999999999999999999999999999999999999999999999876432 3
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHhccC--CCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceE
Q psy7557 149 AGPSVLVMAPTRELATQIEREVNKIDY--KGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSF 226 (936)
Q Consensus 149 ~~~~~lil~Pt~~La~Q~~~~~~~~~~--~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~ 226 (936)
.++++||++||++|+.|+++.++++.. .++++..++||.....+...+ .+++|+|+||+++.+++..+.+.++++++
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~ 169 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRL 169 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCE
Confidence 467899999999999999999999753 378999999988776665544 46999999999999999888888899999
Q ss_pred EEEccchhhhcCC-CHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEe
Q psy7557 227 VVLDEADRMLDLG-FEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNV 284 (936)
Q Consensus 227 lViDEah~l~~~~-~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~ 284 (936)
+|+||||+++++| |...+..+...+++..|++++|||+|+.+.+++..++.+|..+.+
T Consensus 170 lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 170 FILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp EEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred EEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 9999999999998 999999999999989999999999999999999999999987754
No 109
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=6.4e-35 Score=333.37 Aligned_cols=260 Identities=15% Similarity=0.128 Sum_probs=186.1
Q ss_pred HHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhccCCCCEEEEEECC
Q psy7557 627 WPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGG 706 (936)
Q Consensus 627 i~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg 706 (936)
...+.+|++++++||||||||++|++|++..+.. .++++||++||++||.|+.+.+..+ .+....+.
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~--------~~~~~lvl~Ptr~La~Q~~~~l~g~-----~v~~~~~~ 81 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ--------QRLRTAVLAPTRVVAAEMAEALRGL-----PVRYQTSA 81 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH--------TTCCEEEEECSHHHHHHHHHHTTTS-----CEEECC--
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh--------CCCcEEEECchHHHHHHHHHHhcCc-----eEeEEecc
Confidence 3445678999999999999999999999987642 3678999999999999999998743 22221111
Q ss_pred ccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccch-----hccCCCHHHHHHHhhhcCCCceEEEEE
Q psy7557 707 KELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADR-----MLDLGFEPQINKTSIYINPNRQTVMTS 781 (936)
Q Consensus 707 ~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~-----l~~~~~~~~~~~i~~~~~~~~q~v~~S 781 (936)
.... -..+..+.++|.+.+...+... ..++++++|||||||+ ++..+|..... ..++.|+++||
T Consensus 82 ~~~~-----~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~-----~~~~~~~il~S 150 (459)
T 2z83_A 82 VQRE-----HQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATKV-----ELGEAAAIFMT 150 (459)
T ss_dssp -----------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-----HTTSCEEEEEC
T ss_pred cccC-----CCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHHh-----ccCCccEEEEE
Confidence 1100 0122457778888877665543 4588999999999998 44444433222 23688999999
Q ss_pred ecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHH
Q psy7557 782 ATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSD 861 (936)
Q Consensus 782 AT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~ 861 (936)
||++..+..+... ..|+......... . .... +...+.. ..+++||||+++..++.++..
T Consensus 151 AT~~~~~~~~~~~--~~pi~~~~~~~~~---~---------~~~~----~~~~l~~---~~~~~LVF~~s~~~~~~l~~~ 209 (459)
T 2z83_A 151 ATPPGTTDPFPDS--NAPIHDLQDEIPD---R---------AWSS----GYEWITE---YAGKTVWFVASVKMGNEIAMC 209 (459)
T ss_dssp SSCTTCCCSSCCC--SSCEEEEECCCCS---S---------CCSS----CCHHHHH---CCSCEEEECSCHHHHHHHHHH
T ss_pred cCCCcchhhhccC--CCCeEEecccCCc---c---------hhHH----HHHHHHh---cCCCEEEEeCChHHHHHHHHH
Confidence 9998654322211 2333322111000 0 0001 1122222 257899999999999999999
Q ss_pred HHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEE--------------------ccCCC
Q psy7557 862 LACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVIN--------------------YDFPS 921 (936)
Q Consensus 862 L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~--------------------~d~p~ 921 (936)
|...+..+..+||. +|..+++.|++|+.+|||||+++++|+|+|+ ++||+ ||.|.
T Consensus 210 L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~ 284 (459)
T 2z83_A 210 LQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPI 284 (459)
T ss_dssp HHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEEC
T ss_pred HHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCC
Confidence 99999999999995 7889999999999999999999999999999 99999 77999
Q ss_pred ChhhhHhhhhhccCC
Q psy7557 922 HIEEYVHRVGRTGEF 936 (936)
Q Consensus 922 s~~~yiqr~GRaGR~ 936 (936)
|..+|+||+|||||.
T Consensus 285 s~~~~~QR~GRaGR~ 299 (459)
T 2z83_A 285 TSASAAQRRGRVGRN 299 (459)
T ss_dssp CHHHHHHHHTTSSCC
T ss_pred CHHHHHHhccccCCC
Confidence 999999999999995
No 110
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=5.2e-34 Score=293.65 Aligned_cols=207 Identities=39% Similarity=0.598 Sum_probs=184.2
Q ss_pred cccChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCE
Q psy7557 73 PVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPS 152 (936)
Q Consensus 73 p~~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~ 152 (936)
|..+|++ +++++.+++.+.+.||.+|+|+|.++++.+++|+|++++||||||||++|++|++..+... ..+++
T Consensus 2 ~~~~f~~-~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~------~~~~~ 74 (219)
T 1q0u_A 2 AETQFTR-FPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE------RAEVQ 74 (219)
T ss_dssp --CCGGG-SCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT------SCSCC
T ss_pred CCCCHhh-CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC------cCCce
Confidence 3467887 6899999999999999999999999999999999999999999999999999999876431 34678
Q ss_pred EEEEcCcHHHHHHHHHHHHhccC-C----CCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEE
Q psy7557 153 VLVMAPTRELATQIEREVNKIDY-K----GLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFV 227 (936)
Q Consensus 153 ~lil~Pt~~La~Q~~~~~~~~~~-~----~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~l 227 (936)
+||++||++|+.|+++.++++.. . ++++..++||.........+..+++|+|+||+++.+.+.++...+.+++++
T Consensus 75 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~l 154 (219)
T 1q0u_A 75 AVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHIL 154 (219)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEE
T ss_pred EEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEE
Confidence 99999999999999999998743 2 688899999987766655566678999999999999998888889999999
Q ss_pred EEccchhhhcCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCC
Q psy7557 228 VLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGS 286 (936)
Q Consensus 228 ViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~ 286 (936)
|+||||++.+++|...+..+...++++.|++++|||+|+++.++++.++.+|..+.+..
T Consensus 155 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 155 VVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred EEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 99999999999999999999999998999999999999999999999999998886554
No 111
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=5.2e-33 Score=314.35 Aligned_cols=376 Identities=17% Similarity=0.204 Sum_probs=268.8
Q ss_pred cccCCccccccCcCCccccCCCHHHHHHHHhhCCCceEEeecCCCccCCCCCCCCCCcccChHHhhcCCHHH----HHHH
Q psy7557 16 WAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEI----LRQL 91 (936)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~f~~~~~~~~~l----~~~l 91 (936)
..++.++.+.+..-.++...+++++......++..- + ..| .+.++. -|+. .++-
T Consensus 11 lk~~~~~v~~in~le~~~~~lsd~eL~~kt~~fk~r-l----~~g--------------e~ldd~---lpeafAvvREAa 68 (822)
T 3jux_A 11 LKKYAKMVSKINQIESDLRSKKNSELIRLSMVLKEK-V----NSF--------------EDADEH---LFEAFALVREAA 68 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHH-C----CSH--------------HHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHH-H----HcC--------------CChHHH---HHHHHHHHHHHH
Confidence 344555666666667889999998877544332100 0 001 122221 1222 2222
Q ss_pred -HhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q psy7557 92 -ENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREV 170 (936)
Q Consensus 92 -~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~ 170 (936)
..+|. .|+++|.-+.-.+..|+ |+.+.||+|||++|.+|++...+ .|..+.|++||..||.|-.+.+
T Consensus 69 ~R~lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL---------~G~~vhVvT~ndyLA~rdae~m 136 (822)
T 3jux_A 69 RRTLGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNAL---------IGKGVHLVTVNDYLARRDALWM 136 (822)
T ss_dssp HHHTSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHT---------TSSCEEEEESSHHHHHHHHHHH
T ss_pred HHHhCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHh---------cCCceEEEeccHHHHHhHHHHH
Confidence 33677 79999999999999988 99999999999999999987653 3667999999999999999999
Q ss_pred Hhc-cCCCCEEEEEeCCc------------------------------------------------cchHHHHHhhcCCc
Q psy7557 171 NKI-DYKGLKAVCVYGGK------------------------------------------------EIEPQLEKIREGCH 201 (936)
Q Consensus 171 ~~~-~~~~~~~~~~~gg~------------------------------------------------~~~~~~~~~~~~~~ 201 (936)
..+ ...|+++++++... .......+..-.||
T Consensus 137 ~~l~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~D 216 (822)
T 3jux_A 137 GPVYLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCD 216 (822)
T ss_dssp HHHHHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSS
T ss_pred HHHHHHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCC
Confidence 884 57899999998721 00011111112389
Q ss_pred EEEeCCchh-HHHHHcC------CcCCCCceEEEEccchhhh-cCC---------------C------------------
Q psy7557 202 ILIATPGRL-NDFVSRA------SIDLKAVSFVVLDEADRML-DLG---------------F------------------ 240 (936)
Q Consensus 202 Iiv~Tp~~l-~~~l~~~------~~~~~~~~~lViDEah~l~-~~~---------------~------------------ 240 (936)
|.++|..-+ .|.|..+ ......+.+.|+||+|.++ |.. .
T Consensus 217 ItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~ 296 (822)
T 3jux_A 217 VTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFT 296 (822)
T ss_dssp EEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEE
T ss_pred CEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEE
Confidence 999999876 3555433 1224668999999999865 100 0
Q ss_pred -----------HHHH---------------------HHHHh------hcCCC----------------------------
Q psy7557 241 -----------EPQI---------------------NKTSI------YINPN---------------------------- 254 (936)
Q Consensus 241 -----------~~~~---------------------~~i~~------~~~~~---------------------------- 254 (936)
...+ ..+.. .+..+
T Consensus 297 vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~ 376 (822)
T 3jux_A 297 VDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSG 376 (822)
T ss_dssp ECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGG
T ss_pred EEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCch
Confidence 0000 00000 00000
Q ss_pred ---------------------------------CcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEE-EEE
Q psy7557 255 ---------------------------------RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQ-KII 300 (936)
Q Consensus 255 ---------------------------------~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~ 300 (936)
..+.+||+|.......+...|..+.+. +.... ....+.+ ..+
T Consensus 377 GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~--IPtnk--p~~R~d~~d~v 452 (822)
T 3jux_A 377 GLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGMEVVV--IPTHK--PMIRKDHDDLV 452 (822)
T ss_dssp GHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCCEEE--CCCSS--CCCCEECCCEE
T ss_pred HHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCeEEE--ECCCC--CcceeecCcEE
Confidence 168899999998888888887655333 32211 1122322 356
Q ss_pred EeCchhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEec
Q psy7557 301 ILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATD 380 (936)
Q Consensus 301 ~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~ 380 (936)
.....+|...+...+......+.++||||+|+..++.++..|...|+++..+||+..+.+|..+.+.|+.| .|+||||
T Consensus 453 y~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATd 530 (822)
T 3jux_A 453 FRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATN 530 (822)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEET
T ss_pred EecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcc
Confidence 67888899999988876544578999999999999999999999999999999996666666666666666 5999999
Q ss_pred ccccCCCCC--------CCcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccCh
Q psy7557 381 VASRGLDVP--------DLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDW 431 (936)
Q Consensus 381 ~~~~GiDip--------~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~ 431 (936)
+++||+||+ +..+||+|++|.|...|+||+|||||.|.+|.+++|++.+|.
T Consensus 531 mAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 531 MAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp TTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred hhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 999999998 667999999999999999999999999999999999998873
No 112
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=3.7e-33 Score=284.66 Aligned_cols=200 Identities=31% Similarity=0.556 Sum_probs=183.0
Q ss_pred ChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEE
Q psy7557 76 SFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLV 155 (936)
Q Consensus 76 ~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~li 155 (936)
+|++ +++++.+++.|.+.||.+|+|+|.++++.+++|+|++++||||||||++|++|++..+... ..++++||
T Consensus 4 ~f~~-~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~------~~~~~~li 76 (206)
T 1vec_A 4 EFED-YCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK------KDNIQAMV 76 (206)
T ss_dssp SGGG-SCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT------SCSCCEEE
T ss_pred Chhh-cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc------CCCeeEEE
Confidence 5777 6899999999999999999999999999999999999999999999999999999876432 35678999
Q ss_pred EcCcHHHHHHHHHHHHhccC-C-CCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccch
Q psy7557 156 MAPTRELATQIEREVNKIDY-K-GLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEAD 233 (936)
Q Consensus 156 l~Pt~~La~Q~~~~~~~~~~-~-~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah 233 (936)
++||++|+.|+++.++++.. . ++++..++||.....+...+..+++|+|+||+++.+.+.++...+++++++|+||||
T Consensus 77 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah 156 (206)
T 1vec_A 77 IVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEAD 156 (206)
T ss_dssp ECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHH
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChH
Confidence 99999999999999998743 3 788999999988888877787889999999999999998888889999999999999
Q ss_pred hhhcCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEE
Q psy7557 234 RMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKV 282 (936)
Q Consensus 234 ~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i 282 (936)
++.+.+|...+..+...++++.|++++|||+|+.+.++++.++.+|+.+
T Consensus 157 ~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 157 KLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred HhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 9999999999999999999899999999999999999999999999765
No 113
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=303.84 Aligned_cols=204 Identities=31% Similarity=0.480 Sum_probs=181.4
Q ss_pred CCcCChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcC--CcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCC
Q psy7557 592 NPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSG--HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERA 669 (936)
Q Consensus 592 ~~~~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g--~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~ 669 (936)
.++.+|++ +++++.+++.|.++||..|+|+|.++||.++.| +|++++||||||||++|++|++.++... ..
T Consensus 89 ~~~~~f~~-l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~------~~ 161 (300)
T 3fmo_B 89 YSVKSFEE-LRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA------NK 161 (300)
T ss_dssp CCCCCSGG-GTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT------SC
T ss_pred CCcCCHhh-cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc------CC
Confidence 35678887 689999999999999999999999999999987 9999999999999999999999877432 45
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhccC--CCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHc-CCCCCCCceE
Q psy7557 670 GPSVLVMAPTRELATQIEREVNKIDY--KGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSR-ASIDLKAVSF 746 (936)
Q Consensus 670 ~~~~lil~Pt~~La~Q~~~~~~~~~~--~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~-~~~~~~~i~~ 746 (936)
++++||++||++||.|+++.++.+.. .++.+...+||....... ..+++|+||||+++.+++.+ +.+.++++++
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~ 238 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKV 238 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSE
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceE
Confidence 77999999999999999999999853 468888888887655432 45689999999999999966 5667899999
Q ss_pred EEEcccchhcc-CCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeC
Q psy7557 747 VVLDEADRMLD-LGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVG 805 (936)
Q Consensus 747 lViDEah~l~~-~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~ 805 (936)
|||||||+|++ .+|...+..+...+++++|+++||||++..+..++..++.+|..+.+.
T Consensus 239 lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 239 FVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp EEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred EEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 99999999998 789999999999999999999999999999999999999999988764
No 114
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.3e-33 Score=294.33 Aligned_cols=230 Identities=31% Similarity=0.551 Sum_probs=190.7
Q ss_pred HHHHHHhhCCCceEEeecCCCccCCCCCCCCCCcccChHHh---hcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcE
Q psy7557 40 QVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQA---FQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDM 116 (936)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~f~~~---~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~ 116 (936)
+++.+++++. +.+.+ .+.|.|+.+|++. +++++.+++++.+.||..|+|+|.++++.+++|+|+
T Consensus 3 ~~~~~~~~~~-i~~~~------------~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~ 69 (245)
T 3dkp_A 3 KINFLRNKHK-IHVQG------------TDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGREL 69 (245)
T ss_dssp HHHHHHHHTT-EEEES------------SSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCE
T ss_pred hHHHHHHhCc-eEecC------------CCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCE
Confidence 4566776654 55442 3578999999885 489999999999999999999999999999999999
Q ss_pred EEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhcc-CCCCEEEEEeCCccchHHH-H
Q psy7557 117 IGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQL-E 194 (936)
Q Consensus 117 l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~-~ 194 (936)
+++||||||||++|++|++..+... ...++++||++||++|+.|+++.++++. ..++++..++|+....... .
T Consensus 70 l~~a~TGsGKT~~~~l~~l~~l~~~-----~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (245)
T 3dkp_A 70 LASAPTGSGKTLAFSIPILMQLKQP-----ANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGP 144 (245)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHCSC-----CSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTST
T ss_pred EEECCCCCcHHHHHHHHHHHHHhhc-----ccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhh
Confidence 9999999999999999999877432 2457789999999999999999999964 4577887777665433222 1
Q ss_pred HhhcCCcEEEeCCchhHHHHHcC--CcCCCCceEEEEccchhhhc---CCCHHHHHHHHhhc-CCCCcEEEEEeccchHH
Q psy7557 195 KIREGCHILIATPGRLNDFVSRA--SIDLKAVSFVVLDEADRMLD---LGFEPQINKTSIYI-NPNRQTVMTSATWNKDV 268 (936)
Q Consensus 195 ~~~~~~~Iiv~Tp~~l~~~l~~~--~~~~~~~~~lViDEah~l~~---~~~~~~~~~i~~~~-~~~~q~~~~SAT~~~~~ 268 (936)
....+++|+|+||+++.+++... ...+++++++|+||||++++ .+|...+..++..+ +++.|+++||||+|+++
T Consensus 145 ~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v 224 (245)
T 3dkp_A 145 KSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDV 224 (245)
T ss_dssp TSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHH
T ss_pred hhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHH
Confidence 22345899999999999999876 46789999999999999998 57888888887665 45789999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCC
Q psy7557 269 QRVAKKYMVNPVKVNVGSL 287 (936)
Q Consensus 269 ~~~~~~~~~~~~~i~~~~~ 287 (936)
..+++.++.+|+.+.++..
T Consensus 225 ~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 225 EQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp HHHHHHHSSSCEEEEECC-
T ss_pred HHHHHHhCCCCEEEEeCCC
Confidence 9999999999999988764
No 115
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=7.3e-33 Score=288.74 Aligned_cols=211 Identities=35% Similarity=0.523 Sum_probs=185.8
Q ss_pred CCcccChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCC
Q psy7557 71 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAG 150 (936)
Q Consensus 71 p~p~~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~ 150 (936)
+.++.+|++ +++++.+++.|.+.||..|+|+|.++++.+++|+|+++++|||||||++|++|++..+..... ....+
T Consensus 21 ~~~~~~f~~-~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~--~~~~~ 97 (236)
T 2pl3_A 21 VNEITRFSD-FPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW--TSTDG 97 (236)
T ss_dssp GGGCSBGGG-SCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC--CGGGC
T ss_pred CcccCCHhh-cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc--cccCC
Confidence 456778988 799999999999999999999999999999999999999999999999999999987754321 12357
Q ss_pred CEEEEEcCcHHHHHHHHHHHHhcc-CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcC-CcCCCCceEEE
Q psy7557 151 PSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRA-SIDLKAVSFVV 228 (936)
Q Consensus 151 ~~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-~~~~~~~~~lV 228 (936)
+++||++||++|+.|+++.++++. ..++++..++||.....+...+ .+++|+|+||+++.+.+... ...+.+++++|
T Consensus 98 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lV 176 (236)
T 2pl3_A 98 LGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLV 176 (236)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEE
Confidence 889999999999999999999975 4578899999998877666555 46999999999999988765 56788999999
Q ss_pred EccchhhhcCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeC
Q psy7557 229 LDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVG 285 (936)
Q Consensus 229 iDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~ 285 (936)
+||||++.+++|...+..+...+++++|+++||||+++.+..+++.++.+|..+.+.
T Consensus 177 iDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 177 LDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp ETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred EeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 999999999999999999999999999999999999999999999999999988764
No 116
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=1e-33 Score=336.22 Aligned_cols=304 Identities=16% Similarity=0.186 Sum_probs=186.2
Q ss_pred CCcHHHHHHHHhhhc----C-CcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHH-HHHH
Q psy7557 618 TPSPIQAQAWPILMS----G-HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIE-REVN 691 (936)
Q Consensus 618 ~p~~iQ~~ai~~~l~----g-~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~-~~~~ 691 (936)
.|+|+|.+|++.++. | +++++++|||||||++++..+...+...........++++|||+||++|+.|+. +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 799999999999875 4 679999999999999976544433322111111225789999999999999998 7777
Q ss_pred hccCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHc----CCCCCCCceEEEEcccchhccCCCHHHHHHH
Q psy7557 692 KIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSR----ASIDLKAVSFVVLDEADRMLDLGFEPQINKT 767 (936)
Q Consensus 692 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~----~~~~~~~i~~lViDEah~l~~~~~~~~~~~i 767 (936)
.++ ..+..+.++. ...+.+|+|+||+++...... ..+....+++||+||||++...+ ...+..+
T Consensus 258 ~~~---~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~i 325 (590)
T 3h1t_A 258 PFG---DARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWREI 325 (590)
T ss_dssp TTC---SSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHHH
T ss_pred hcc---hhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHHH
Confidence 663 2333333322 234579999999999887642 23456789999999999987642 2334445
Q ss_pred hhhcCCCceEEEEEecCChHHHHHHHHhcCCCeE-----------------EEeCCCCcccC-------------CceEE
Q psy7557 768 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVK-----------------VNVGSLDLAAT-------------HTVTQ 817 (936)
Q Consensus 768 ~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~-----------------i~~~~~~~~~~-------------~~~~~ 817 (936)
+..++ ..++++||||+..........++..++. +.......... ..+..
T Consensus 326 l~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (590)
T 3h1t_A 326 LEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPD 404 (590)
T ss_dssp HHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-------------------
T ss_pred HHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccccccc
Confidence 55554 4689999999864332222222222221 11000000000 00000
Q ss_pred EEEEcCc-------chhHHH----HHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCc--------eEEEeCCCCH
Q psy7557 818 KIIILDE-------DEKKDW----LMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRK--------SCSLYGDLSQ 878 (936)
Q Consensus 818 ~~~~~~~-------~~k~~~----l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~--------~~~~h~~l~~ 878 (936)
....... ..+... +...+... ...+++||||+++.+|+.++..|...+.. +..+||++++
T Consensus 405 ~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~-~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~ 483 (590)
T 3h1t_A 405 GEYQTKDFERVIALKARTDAFAKHLTDFMKRT-DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK 483 (590)
T ss_dssp ----CCSHHHHHHHHHTHHHHHHHHHHHHHHH-CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH
T ss_pred ccCCHHHhhhHhcChHHHHHHHHHHHHHHHhc-CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH
Confidence 0000000 111222 22233333 44579999999999999999999876532 6778998764
Q ss_pred HHHHHHHHHhhcCCCc---EEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 879 EDREIALEDITSGYAR---ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 879 ~~R~~~~~~F~~g~~~---vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
+|..+++.|++|+.+ |||||+++++|+|+|++++||+++.|.|...|+||+||+||.
T Consensus 484 -~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~ 543 (590)
T 3h1t_A 484 -IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRL 543 (590)
T ss_dssp -HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCC
T ss_pred -HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhccc
Confidence 799999999998876 999999999999999999999999999999999999999994
No 117
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=3.7e-33 Score=292.39 Aligned_cols=208 Identities=36% Similarity=0.558 Sum_probs=187.9
Q ss_pred CCCcCChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCC
Q psy7557 591 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAG 670 (936)
Q Consensus 591 p~~~~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~ 670 (936)
+.+..+|++ +++++.+++.|+++||..|+|+|.++++.+++|+|++++||||||||++|++|++..+... ..+
T Consensus 39 ~~~~~~f~~-l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~------~~~ 111 (249)
T 3ber_A 39 EEETKTFKD-LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET------PQR 111 (249)
T ss_dssp HHHHCCTGG-GTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS------CCS
T ss_pred ccccCCHHH-cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC------CCC
Confidence 345677888 6899999999999999999999999999999999999999999999999999999877542 346
Q ss_pred CEEEEEecCHHHHHHHHHHHHhcc-CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHc-CCCCCCCceEEE
Q psy7557 671 PSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSR-ASIDLKAVSFVV 748 (936)
Q Consensus 671 ~~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~-~~~~~~~i~~lV 748 (936)
+++||++||++|+.|+.+.++++. ..++++..++||.....+...+..+++|+|+||+++.+.+.+ ....++++++||
T Consensus 112 ~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lV 191 (249)
T 3ber_A 112 LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLV 191 (249)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEE
Confidence 789999999999999999999874 347889999999888877777888899999999999998876 456789999999
Q ss_pred EcccchhccCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeC
Q psy7557 749 LDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVG 805 (936)
Q Consensus 749 iDEah~l~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~ 805 (936)
+||||++.+++|...+..+...+++++|+++||||++..+.++++.++.+|+.+.++
T Consensus 192 iDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 192 MDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp ECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred EcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 999999999999999999999999999999999999999999999999999988653
No 118
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=2e-33 Score=292.68 Aligned_cols=210 Identities=35% Similarity=0.526 Sum_probs=177.2
Q ss_pred CCCCCcCChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccC
Q psy7557 589 QIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISER 668 (936)
Q Consensus 589 ~~p~~~~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~ 668 (936)
.+|.++.+|++ +++++.++++|.++||..|+|+|.++++.+++|+|++++||||||||++|++|++..+... .
T Consensus 24 ~~~~~~~~f~~-l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~------~ 96 (237)
T 3bor_A 24 NWNEIVDNFDD-MNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE------F 96 (237)
T ss_dssp ---CCCCSGGG-SCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT------S
T ss_pred CCCCccCChhh-cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc------C
Confidence 46778889998 6899999999999999999999999999999999999999999999999999999876421 3
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhcc-CCCCEEEEEECCccchHHHHHHhcC-ceEEEeCchHHHHHHHcCCCCCCCceE
Q psy7557 669 AGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREG-CHILIATPGRLNDFVSRASIDLKAVSF 746 (936)
Q Consensus 669 ~~~~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~-~~IiV~Tp~~l~~~l~~~~~~~~~i~~ 746 (936)
.++++||++||++|+.|+.+.++++. ..++.+..++||.....+...+..+ ++|+|+||+++.+++.+....++++++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~ 176 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKM 176 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCE
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcE
Confidence 46789999999999999999999985 4478888899998877777777666 899999999999999888888899999
Q ss_pred EEEcccchhccCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeC
Q psy7557 747 VVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVG 805 (936)
Q Consensus 747 lViDEah~l~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~ 805 (936)
||+||||++++++|...+..+...+++..|++++|||+++++.++++.++.+|+.+.++
T Consensus 177 lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 177 FVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp EEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred EEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 99999999999999999999999999999999999999999999999999999887654
No 119
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.1e-32 Score=281.11 Aligned_cols=200 Identities=31% Similarity=0.559 Sum_probs=182.4
Q ss_pred ChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEE
Q psy7557 596 SFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLV 675 (936)
Q Consensus 596 ~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~li 675 (936)
+|++ +++++.+++.|.++||..|+|+|.++++.+++|+|++++||||||||++|++|++..+... ..++++||
T Consensus 4 ~f~~-~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~------~~~~~~li 76 (206)
T 1vec_A 4 EFED-YCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK------KDNIQAMV 76 (206)
T ss_dssp SGGG-SCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT------SCSCCEEE
T ss_pred Chhh-cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc------CCCeeEEE
Confidence 5776 6899999999999999999999999999999999999999999999999999999776321 35678999
Q ss_pred EecCHHHHHHHHHHHHhccC--CCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccc
Q psy7557 676 MAPTRELATQIEREVNKIDY--KGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEAD 753 (936)
Q Consensus 676 l~Pt~~La~Q~~~~~~~~~~--~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah 753 (936)
++||++|+.|+.+.++++.. .+.++..++||.....+...+..+++|+|+||+++.+.+.++...+++++++|+||||
T Consensus 77 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah 156 (206)
T 1vec_A 77 IVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEAD 156 (206)
T ss_dssp ECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHH
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChH
Confidence 99999999999999998753 2688899999988888777787889999999999999999888889999999999999
Q ss_pred hhccCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEE
Q psy7557 754 RMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKV 802 (936)
Q Consensus 754 ~l~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i 802 (936)
++.+.+|...+..+...++++.|++++|||+|..+.++++.++.+|..+
T Consensus 157 ~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 157 KLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred HhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 9999999999999999998899999999999999999999999999765
No 120
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=6.2e-33 Score=286.96 Aligned_cols=210 Identities=35% Similarity=0.527 Sum_probs=181.0
Q ss_pred CCCCcccChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCC
Q psy7557 69 QIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISER 148 (936)
Q Consensus 69 ~~p~p~~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~ 148 (936)
+.|+++.+|++ +++++.+++.+.+.||.+|+|+|.++++.+++|+|+++++|||||||++|++|++..+... .
T Consensus 8 ~~~~~~~~f~~-l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~------~ 80 (224)
T 1qde_A 8 NYDKVVYKFDD-MELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS------V 80 (224)
T ss_dssp SCCCCCCCGGG-GTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT------C
T ss_pred ccCcccCChhh-cCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc------C
Confidence 56788899998 6999999999999999999999999999999999999999999999999999999876432 3
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHhcc-CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEE
Q psy7557 149 AGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFV 227 (936)
Q Consensus 149 ~~~~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~l 227 (936)
.++++||++||++|+.|+++.++++. ..++++..++||.....+...+.. ++|+|+||+++.+.+.++...+++++++
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~i 159 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMF 159 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEE
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEE
Confidence 46799999999999999999999875 458889999998877666555544 8999999999999998888889999999
Q ss_pred EEccchhhhcCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCC
Q psy7557 228 VLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGS 286 (936)
Q Consensus 228 ViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~ 286 (936)
|+||||++.+++|...+..+...++++.|++++|||+++.+.++++.++.+|+.+.+..
T Consensus 160 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 160 ILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred EEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 99999999999999999999999999999999999999999999999999998886654
No 121
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=5e-33 Score=288.40 Aligned_cols=208 Identities=31% Similarity=0.511 Sum_probs=181.9
Q ss_pred CCCCCcCChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccC
Q psy7557 589 QIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISER 668 (936)
Q Consensus 589 ~~p~~~~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~ 668 (936)
..|.+..+|++ +++++.+.+.|.++||..|+|+|.++++.+++|+|+++++|||||||++|++|++..+... .
T Consensus 18 ~~~~~~~~f~~-l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~------~ 90 (230)
T 2oxc_A 18 VLLAEPADFES-LLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE------N 90 (230)
T ss_dssp ------CCGGG-GTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT------S
T ss_pred CCCCCCCCHhh-cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc------C
Confidence 45667788988 6899999999999999999999999999999999999999999999999999999876432 3
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhccC--CCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceE
Q psy7557 669 AGPSVLVMAPTRELATQIEREVNKIDY--KGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSF 746 (936)
Q Consensus 669 ~~~~~lil~Pt~~La~Q~~~~~~~~~~--~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~ 746 (936)
.++++||++||++|+.|+.+.++++.. .++++..++||.....+...+ .+++|+|+||+++.+++..+...++++++
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~ 169 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRL 169 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCE
Confidence 467999999999999999999999853 378899999988776665554 46899999999999999888888899999
Q ss_pred EEEcccchhccCC-CHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEe
Q psy7557 747 VVLDEADRMLDLG-FEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNV 804 (936)
Q Consensus 747 lViDEah~l~~~~-~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~ 804 (936)
+|+||||++++++ |...+..+...+++..|++++|||+++.+.+++..++.+|..+.+
T Consensus 170 lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 170 FILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp EEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred EEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 9999999999997 999999999999989999999999999999999999999987754
No 122
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=1.9e-33 Score=289.54 Aligned_cols=206 Identities=39% Similarity=0.600 Sum_probs=183.2
Q ss_pred cCChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEE
Q psy7557 594 VTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSV 673 (936)
Q Consensus 594 ~~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~ 673 (936)
..+|++ +++++.+++.|.++||..|+|+|.++++.+++|+|++++||||||||++|++|++..+... ..++++
T Consensus 3 ~~~f~~-~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~------~~~~~~ 75 (219)
T 1q0u_A 3 ETQFTR-FPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE------RAEVQA 75 (219)
T ss_dssp -CCGGG-SCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT------SCSCCE
T ss_pred CCCHhh-CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC------cCCceE
Confidence 456877 6899999999999999999999999999999999999999999999999999999876431 346789
Q ss_pred EEEecCHHHHHHHHHHHHhccCC-----CCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEE
Q psy7557 674 LVMAPTRELATQIEREVNKIDYK-----GLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVV 748 (936)
Q Consensus 674 lil~Pt~~La~Q~~~~~~~~~~~-----~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lV 748 (936)
||++||++|+.|+.+.++++... ++.+..++||.........+..+++|+|+||+++.+++.++...+++++++|
T Consensus 76 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lV 155 (219)
T 1q0u_A 76 VITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILV 155 (219)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEE
T ss_pred EEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEE
Confidence 99999999999999999887432 6788889998876665555556789999999999999998888889999999
Q ss_pred EcccchhccCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCC
Q psy7557 749 LDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGS 806 (936)
Q Consensus 749 iDEah~l~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~ 806 (936)
+||||++.+++|...+..+...++++.|++++|||++.++.++++.++.+|..+.+..
T Consensus 156 iDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 156 VDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp ECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred EcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 9999999999999999999999998999999999999999999999999999887654
No 123
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=4.9e-33 Score=293.31 Aligned_cols=215 Identities=42% Similarity=0.690 Sum_probs=188.8
Q ss_pred CcCChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCC---CccCC
Q psy7557 593 PVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTP---ISERA 669 (936)
Q Consensus 593 ~~~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~---~~~~~ 669 (936)
++.+|++ +++++.++++|.++||..|+|+|.++++.+++|+|++++||||||||++|++|++..+...... .....
T Consensus 21 ~~~~f~~-l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~ 99 (253)
T 1wrb_A 21 VIENFDE-LKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTA 99 (253)
T ss_dssp CCCSSGG-GSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCB
T ss_pred ccCCHhh-CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccC
Confidence 7788988 6899999999999999999999999999999999999999999999999999999887543211 11234
Q ss_pred CCEEEEEecCHHHHHHHHHHHHhcc-CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEE
Q psy7557 670 GPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVV 748 (936)
Q Consensus 670 ~~~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lV 748 (936)
++++||++||++|+.|+.+.++++. ..++++..++||.....+...+..+++|+|+||+++.+++.++...+++++++|
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lV 179 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIV 179 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEE
Confidence 5799999999999999999999985 457888999999998888888888899999999999999998888899999999
Q ss_pred EcccchhccCCCHHHHHHHhhhc--CC--CceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCC
Q psy7557 749 LDEADRMLDLGFEPQINKTSIYI--NP--NRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLD 808 (936)
Q Consensus 749 iDEah~l~~~~~~~~~~~i~~~~--~~--~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~ 808 (936)
+||||++++++|...+..+...+ +. ++|+++||||+++++..++..++.+|+.+.++...
T Consensus 180 iDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~ 243 (253)
T 1wrb_A 180 LDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVG 243 (253)
T ss_dssp EETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC---
T ss_pred EeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCC
Confidence 99999999999999999998853 33 68999999999999999999999999999887654
No 124
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=1.4e-32 Score=280.73 Aligned_cols=205 Identities=43% Similarity=0.659 Sum_probs=185.2
Q ss_pred ChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEE
Q psy7557 76 SFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLV 155 (936)
Q Consensus 76 ~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~li 155 (936)
+|++ +++++.+++.+.+.||.+|+|+|.++++.+++|+|+++++|||||||++|++|++..+.... ....++++||
T Consensus 2 ~f~~-~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~---~~~~~~~~li 77 (207)
T 2gxq_A 2 EFKD-FPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ---ERGRKPRALV 77 (207)
T ss_dssp CGGG-SCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC---CTTCCCSEEE
T ss_pred Chhh-cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc---ccCCCCcEEE
Confidence 5777 68999999999999999999999999999999999999999999999999999998775321 1245789999
Q ss_pred EcCcHHHHHHHHHHHHhccCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhh
Q psy7557 156 MAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRM 235 (936)
Q Consensus 156 l~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l 235 (936)
++||++|+.|+++.++++.. .+++..++||.....+...+..+++|+|+||+++.+.+..+...+++++++|+||||++
T Consensus 78 l~P~~~L~~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~ 156 (207)
T 2gxq_A 78 LTPTRELALQVASELTAVAP-HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEM 156 (207)
T ss_dssp ECSSHHHHHHHHHHHHHHCT-TSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHH
T ss_pred EECCHHHHHHHHHHHHHHhh-cceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHh
Confidence 99999999999999999753 37888999998888887778788999999999999999888888999999999999999
Q ss_pred hcCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeC
Q psy7557 236 LDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVG 285 (936)
Q Consensus 236 ~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~ 285 (936)
.+++|...+..+...++++.|++++|||+|+.+.++++.++.+|..+.+.
T Consensus 157 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~~ 206 (207)
T 2gxq_A 157 LSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVI 206 (207)
T ss_dssp HHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEECC
T ss_pred hccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEcC
Confidence 99999999999999999999999999999999999999999999887653
No 125
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=291.10 Aligned_cols=196 Identities=32% Similarity=0.491 Sum_probs=177.2
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHH
Q psy7557 83 HYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTREL 162 (936)
Q Consensus 83 ~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~L 162 (936)
+++.+++.|.+.||.+|+|+|.++++.++.|+|++++||||||||++|++|++..+..... ....++++||++||++|
T Consensus 61 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~--~~~~~~~~lil~Pt~~L 138 (262)
T 3ly5_A 61 VNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRF--MPRNGTGVLILSPTREL 138 (262)
T ss_dssp CCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTC--CGGGCCCEEEECSSHHH
T ss_pred cCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccc--cccCCceEEEEeCCHHH
Confidence 7899999999999999999999999999999999999999999999999999988764321 12357789999999999
Q ss_pred HHHHHHHHHhcc-CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcC-CcCCCCceEEEEccchhhhcCCC
Q psy7557 163 ATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRA-SIDLKAVSFVVLDEADRMLDLGF 240 (936)
Q Consensus 163 a~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-~~~~~~~~~lViDEah~l~~~~~ 240 (936)
|.|+++.++++. ..+..+..++||.....+...+..+++|+|+||++|.+.+... ...+++++++|+||||++++++|
T Consensus 139 a~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~ 218 (262)
T 3ly5_A 139 AMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGF 218 (262)
T ss_dssp HHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhH
Confidence 999999999964 5688899999999988888888888999999999999988765 46789999999999999999999
Q ss_pred HHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCE
Q psy7557 241 EPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPV 280 (936)
Q Consensus 241 ~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~ 280 (936)
...+..+...+++.+|+++||||+|+.+..+++.++.++.
T Consensus 219 ~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 219 EEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp HHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999887553
No 126
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=2.1e-32 Score=283.04 Aligned_cols=210 Identities=35% Similarity=0.529 Sum_probs=180.3
Q ss_pred CCCCCcCChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccC
Q psy7557 589 QIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISER 668 (936)
Q Consensus 589 ~~p~~~~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~ 668 (936)
..|.++.+|++ +++++.+++.|.++||..|+|+|.++++.+++|+|+++++|||||||++|++|++..+... .
T Consensus 8 ~~~~~~~~f~~-l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~------~ 80 (224)
T 1qde_A 8 NYDKVVYKFDD-MELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS------V 80 (224)
T ss_dssp SCCCCCCCGGG-GTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT------C
T ss_pred ccCcccCChhh-cCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc------C
Confidence 46778889988 6899999999999999999999999999999999999999999999999999999876432 3
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHhcc-CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEE
Q psy7557 669 AGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFV 747 (936)
Q Consensus 669 ~~~~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~l 747 (936)
.++++||++||++|+.|+.+.++++. ..++++..++||.....+...+.. ++|+|+||+++.+.+.+....+++++++
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~i 159 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMF 159 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEE
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEE
Confidence 46799999999999999999999875 457888999998877666555544 8999999999999999888889999999
Q ss_pred EEcccchhccCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCC
Q psy7557 748 VLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGS 806 (936)
Q Consensus 748 ViDEah~l~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~ 806 (936)
|+||||++.+++|...+..+...++++.|++++|||+++++.++++.++.+|+.+.+..
T Consensus 160 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 160 ILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred EEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 99999999999999999999999999999999999999999999999999998886654
No 127
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=4.4e-32 Score=276.97 Aligned_cols=204 Identities=44% Similarity=0.671 Sum_probs=184.6
Q ss_pred ChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEE
Q psy7557 596 SFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLV 675 (936)
Q Consensus 596 ~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~li 675 (936)
+|++ +++++.+++.|.+.||..|+|+|.++++.+++|+|+++++|||||||++|++|++..+.... ....++++||
T Consensus 2 ~f~~-~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~---~~~~~~~~li 77 (207)
T 2gxq_A 2 EFKD-FPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ---ERGRKPRALV 77 (207)
T ss_dssp CGGG-SCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC---CTTCCCSEEE
T ss_pred Chhh-cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc---ccCCCCcEEE
Confidence 4666 68999999999999999999999999999999999999999999999999999998775321 1245789999
Q ss_pred EecCHHHHHHHHHHHHhccCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchh
Q psy7557 676 MAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRM 755 (936)
Q Consensus 676 l~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l 755 (936)
++||++|+.|+.+.++++.. .+++..++||.....+...+..+++|+|+||+++.+++.++...+++++++|+||||++
T Consensus 78 l~P~~~L~~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~ 156 (207)
T 2gxq_A 78 LTPTRELALQVASELTAVAP-HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEM 156 (207)
T ss_dssp ECSSHHHHHHHHHHHHHHCT-TSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHH
T ss_pred EECCHHHHHHHHHHHHHHhh-cceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHh
Confidence 99999999999999999853 37888999999888887888888999999999999999888888999999999999999
Q ss_pred ccCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEe
Q psy7557 756 LDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNV 804 (936)
Q Consensus 756 ~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~ 804 (936)
.+.+|...+..+...++++.|++++|||+++++.++++.++.+|..+.+
T Consensus 157 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 157 LSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 9999999999999999999999999999999999999999999988764
No 128
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=4.4e-32 Score=282.86 Aligned_cols=212 Identities=35% Similarity=0.526 Sum_probs=184.8
Q ss_pred CCCcCChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCC
Q psy7557 591 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAG 670 (936)
Q Consensus 591 p~~~~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~ 670 (936)
+.++.+|++ +++++.+++.|.++||..|+|+|.++++.+++|+|+++++|||||||++|++|++..+.... .....+
T Consensus 21 ~~~~~~f~~-~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~--~~~~~~ 97 (236)
T 2pl3_A 21 VNEITRFSD-FPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQ--WTSTDG 97 (236)
T ss_dssp GGGCSBGGG-SCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTT--CCGGGC
T ss_pred CcccCCHhh-cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhc--ccccCC
Confidence 345667887 78999999999999999999999999999999999999999999999999999998775422 122457
Q ss_pred CEEEEEecCHHHHHHHHHHHHhcc-CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcC-CCCCCCceEEE
Q psy7557 671 PSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRA-SIDLKAVSFVV 748 (936)
Q Consensus 671 ~~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~-~~~~~~i~~lV 748 (936)
+++||++||++|+.|+.+.++.+. ..++++..++||.....+...+ .+++|+|+||+++.+.+.+. ...+.+++++|
T Consensus 98 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lV 176 (236)
T 2pl3_A 98 LGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLV 176 (236)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEE
Confidence 889999999999999999999985 4468889999998877665555 56899999999999988765 56788999999
Q ss_pred EcccchhccCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCC
Q psy7557 749 LDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGS 806 (936)
Q Consensus 749 iDEah~l~~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~ 806 (936)
+||||++.+++|...+..+...+++.+|++++|||+++.+..+++.++.+|..+.++.
T Consensus 177 iDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 177 LDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp ETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred EeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999999887643
No 129
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.5e-32 Score=286.47 Aligned_cols=214 Identities=31% Similarity=0.563 Sum_probs=180.4
Q ss_pred CCCCCcCChHHh---hcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCC
Q psy7557 589 QIPNPVTSFKQA---FQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI 665 (936)
Q Consensus 589 ~~p~~~~~f~~~---~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~ 665 (936)
..|.|+.+|+++ +++++.+++.|.++||..|+|+|.++++.+++|+|++++||||||||++|++|++..+...
T Consensus 19 ~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~---- 94 (245)
T 3dkp_A 19 DLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQP---- 94 (245)
T ss_dssp SCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSC----
T ss_pred CCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhc----
Confidence 568899999885 5899999999999999999999999999999999999999999999999999999877431
Q ss_pred ccCCCCEEEEEecCHHHHHHHHHHHHhcc-CCCCEEEEEECCccchHHH-HHHhcCceEEEeCchHHHHHHHcC--CCCC
Q psy7557 666 SERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQL-EKIREGCHILIATPGRLNDFVSRA--SIDL 741 (936)
Q Consensus 666 ~~~~~~~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~-~~l~~~~~IiV~Tp~~l~~~l~~~--~~~~ 741 (936)
...++++||++||++|+.|+.+.++++. ..++++..++|+....... .....+++|+|+||+++.+++.+. ...+
T Consensus 95 -~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 95 -ANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp -CSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred -ccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 2457789999999999999999999874 4567777777654332221 112346899999999999999876 4678
Q ss_pred CCceEEEEcccchhcc---CCCHHHHHHHhhhc-CCCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCC
Q psy7557 742 KAVSFVVLDEADRMLD---LGFEPQINKTSIYI-NPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSL 807 (936)
Q Consensus 742 ~~i~~lViDEah~l~~---~~~~~~~~~i~~~~-~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~ 807 (936)
+++++||+||||++++ .+|...+..+...+ +++.|+++||||+|+++..+++.++.+|+.+.++..
T Consensus 174 ~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 174 ASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp TTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred ccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 9999999999999998 46888888876655 467899999999999999999999999999988764
No 130
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=6.2e-33 Score=325.71 Aligned_cols=281 Identities=20% Similarity=0.219 Sum_probs=206.4
Q ss_pred HHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHH
Q psy7557 606 EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQ 685 (936)
Q Consensus 606 ~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q 685 (936)
+.++.+..+++ | .|.......++|++++++||||||||+. ++..+.. .+.++|++|||+||.|
T Consensus 132 d~l~~i~dl~~--p--~~~~p~ar~l~rk~vlv~apTGSGKT~~----al~~l~~---------~~~gl~l~PtR~LA~Q 194 (677)
T 3rc3_A 132 DDLRKISDLRI--P--PNWYPDARAMQRKIIFHSGPTNSGKTYH----AIQKYFS---------AKSGVYCGPLKLLAHE 194 (677)
T ss_dssp HHHHHHTBCCC--G--GGGCHHHHTSCCEEEEEECCTTSSHHHH----HHHHHHH---------SSSEEEEESSHHHHHH
T ss_pred HHHHHHhhccC--h--hhhCHHHHhcCCCEEEEEcCCCCCHHHH----HHHHHHh---------cCCeEEEeCHHHHHHH
Confidence 33444443433 3 3444445567899999999999999983 3333322 1235999999999999
Q ss_pred HHHHHHhccCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHH
Q psy7557 686 IEREVNKIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQIN 765 (936)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~ 765 (936)
+++.+++. ++++..++|+...... --....+++++|++.+. ..+.++++||||||++++.++...+.
T Consensus 195 i~~~l~~~---g~~v~lltG~~~~iv~--TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~ 261 (677)
T 3rc3_A 195 IFEKSNAA---GVPCDLVTGEERVTVQ--PNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWT 261 (677)
T ss_dssp HHHHHHHT---TCCEEEECSSCEECCS--TTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHH
T ss_pred HHHHHHhc---CCcEEEEECCeeEEec--CCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHH
Confidence 99999885 6788888887654100 00012567777776542 24678999999999999999999998
Q ss_pred HHhhhcC-CCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHHHHhccCCCCc
Q psy7557 766 KTSIYIN-PNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDK 844 (936)
Q Consensus 766 ~i~~~~~-~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~ 844 (936)
.+...++ ...+++++|||. +.+..+.... ..+..+...... .... ..... ...+... .+.
T Consensus 262 ~~l~~l~~~~i~il~~SAT~-~~i~~l~~~~-~~~~~v~~~~r~----~~l~----~~~~~------l~~l~~~---~~g 322 (677)
T 3rc3_A 262 RALLGLCAEEVHLCGEPAAI-DLVMELMYTT-GEEVEVRDYKRL----TPIS----VLDHA------LESLDNL---RPG 322 (677)
T ss_dssp HHHHHCCEEEEEEEECGGGH-HHHHHHHHHH-TCCEEEEECCCS----SCEE----ECSSC------CCSGGGC---CTT
T ss_pred HHHHccCccceEEEeccchH-HHHHHHHHhc-CCceEEEEeeec----chHH----HHHHH------HHHHHhc---CCC
Confidence 8888777 788999999995 3455555444 334433221110 0000 10100 0011111 345
Q ss_pred EEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhc--CCCcEEEecccCccCCCCCCCCEEEEccC---
Q psy7557 845 VMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITS--GYARICVATDVASRGLDVPDLTHVINYDF--- 919 (936)
Q Consensus 845 ~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~--g~~~vLVaT~~~~~Gidip~v~~VI~~d~--- 919 (936)
.+|||++++.++.++..|...+..+..+||+|++++|..+++.|++ |+.+|||||+++++|||+ ++++||++|+
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~ 401 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKP 401 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-
T ss_pred CEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcccc
Confidence 6899999999999999999999999999999999999999999999 899999999999999999 8999999999
Q ss_pred -----------CCChhhhHhhhhhccCC
Q psy7557 920 -----------PSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 920 -----------p~s~~~yiqr~GRaGR~ 936 (936)
|.+..+|+||+|||||.
T Consensus 402 ~~~~~G~~~~~p~s~~~~~QR~GRAGR~ 429 (677)
T 3rc3_A 402 SINEKGERELEPITTSQALQIAGRAGRF 429 (677)
T ss_dssp ----------CBCCHHHHHHHHTTBTCT
T ss_pred ccccCCccccccCCHHHHHHHhcCCCCC
Confidence 77999999999999995
No 131
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2.8e-32 Score=281.08 Aligned_cols=205 Identities=32% Similarity=0.533 Sum_probs=180.7
Q ss_pred CcccChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCC
Q psy7557 72 NPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGP 151 (936)
Q Consensus 72 ~p~~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~ 151 (936)
.+..+|++ +++++.++++|.+.||..|+|+|.++++.+++|+|+++++|||+|||++|++|++..+... ..++
T Consensus 11 ~~~~~f~~-~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~------~~~~ 83 (220)
T 1t6n_A 11 IHSSGFRD-FLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV------TGQV 83 (220)
T ss_dssp ---CCSTT-SCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC------TTCC
T ss_pred ccCCCHhh-cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc------CCCE
Confidence 34456877 6899999999999999999999999999999999999999999999999999998776321 3456
Q ss_pred EEEEEcCcHHHHHHHHHHHHhccC--CCCEEEEEeCCccchHHHHHhhcC-CcEEEeCCchhHHHHHcCCcCCCCceEEE
Q psy7557 152 SVLVMAPTRELATQIEREVNKIDY--KGLKAVCVYGGKEIEPQLEKIREG-CHILIATPGRLNDFVSRASIDLKAVSFVV 228 (936)
Q Consensus 152 ~~lil~Pt~~La~Q~~~~~~~~~~--~~~~~~~~~gg~~~~~~~~~~~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lV 228 (936)
++||++||++|+.|+++.++++.. .++++..++||.....+...+..+ ++|+|+||+++.+++......+++++++|
T Consensus 84 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lV 163 (220)
T 1t6n_A 84 SVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFI 163 (220)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEE
Confidence 899999999999999999999753 278999999998877776666654 79999999999999988888899999999
Q ss_pred Eccchhhhc-CCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEE
Q psy7557 229 LDEADRMLD-LGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVN 283 (936)
Q Consensus 229 iDEah~l~~-~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~ 283 (936)
+||||++++ .+|...+..+....+++.|++++|||+++.+.++++.++.+|..+.
T Consensus 164 iDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 164 LDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp EESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred EcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 999999987 5888999999988888999999999999999999999999998774
No 132
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=4.3e-32 Score=286.55 Aligned_cols=196 Identities=32% Similarity=0.497 Sum_probs=176.6
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHH
Q psy7557 603 HYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTREL 682 (936)
Q Consensus 603 l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~L 682 (936)
+++.+++.|+++||..|+|+|.++++.++.|+|++++||||||||++|++|++..+.... .....++++||++||++|
T Consensus 61 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~--~~~~~~~~~lil~Pt~~L 138 (262)
T 3ly5_A 61 VNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLR--FMPRNGTGVLILSPTREL 138 (262)
T ss_dssp CCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTT--CCGGGCCCEEEECSSHHH
T ss_pred cCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcc--ccccCCceEEEEeCCHHH
Confidence 789999999999999999999999999999999999999999999999999998775432 112357789999999999
Q ss_pred HHHHHHHHHhcc-CCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcC-CCCCCCceEEEEcccchhccCCC
Q psy7557 683 ATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRA-SIDLKAVSFVVLDEADRMLDLGF 760 (936)
Q Consensus 683 a~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~-~~~~~~i~~lViDEah~l~~~~~ 760 (936)
|.|+.+.++++. ..+..+..++||.....+...+..+++|+|+||+++.+.+... ...++++++||+||||++++++|
T Consensus 139 a~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~ 218 (262)
T 3ly5_A 139 AMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGF 218 (262)
T ss_dssp HHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhH
Confidence 999999999974 4578889999999888888888888999999999999988765 46789999999999999999999
Q ss_pred HHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCe
Q psy7557 761 EPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPV 800 (936)
Q Consensus 761 ~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~ 800 (936)
...+..+...+++.+|+++||||+++.+..+++.++.++.
T Consensus 219 ~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 219 EEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp HHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999998887553
No 133
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.98 E-value=1.1e-31 Score=276.66 Aligned_cols=203 Identities=32% Similarity=0.542 Sum_probs=179.8
Q ss_pred cCChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEE
Q psy7557 594 VTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSV 673 (936)
Q Consensus 594 ~~~f~~~~~l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~ 673 (936)
..+|++ +++++.++++|.++||..|+|+|.++++.+++|+|+++++|||||||++|++|++..+.. ...++++
T Consensus 13 ~~~f~~-~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~------~~~~~~~ 85 (220)
T 1t6n_A 13 SSGFRD-FLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP------VTGQVSV 85 (220)
T ss_dssp -CCSTT-SCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC------CTTCCCE
T ss_pred CCCHhh-cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhc------cCCCEEE
Confidence 345776 689999999999999999999999999999999999999999999999999999977632 1345689
Q ss_pred EEEecCHHHHHHHHHHHHhccC--CCCEEEEEECCccchHHHHHHhcC-ceEEEeCchHHHHHHHcCCCCCCCceEEEEc
Q psy7557 674 LVMAPTRELATQIEREVNKIDY--KGLKAVCVYGGKELEPQLEKIREG-CHILIATPGRLNDFVSRASIDLKAVSFVVLD 750 (936)
Q Consensus 674 lil~Pt~~La~Q~~~~~~~~~~--~~~~~~~~~gg~~~~~~~~~l~~~-~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViD 750 (936)
||++||++|+.|+.+.++++.. .++++..++||.....+...+..+ ++|+|+||+++..++.++...+++++++|+|
T Consensus 86 lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViD 165 (220)
T 1t6n_A 86 LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILD 165 (220)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEc
Confidence 9999999999999999999853 278899999998877776666654 6999999999999999888889999999999
Q ss_pred ccchhcc-CCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCeEEE
Q psy7557 751 EADRMLD-LGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVN 803 (936)
Q Consensus 751 Eah~l~~-~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~ 803 (936)
|||++++ .+|...+..+....+++.|++++|||++..+.++++.++.+|..+.
T Consensus 166 Eah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 166 ECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp SHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred CHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 9999987 4788889999888888999999999999999999999999998764
No 134
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.97 E-value=3.6e-32 Score=336.15 Aligned_cols=334 Identities=14% Similarity=0.136 Sum_probs=228.5
Q ss_pred CCCcHHHHHHHHHHhc--CCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhcc
Q psy7557 97 TTPSPIQAQAWPILMS--GHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID 174 (936)
Q Consensus 97 ~~~~~~Q~~ai~~~~~--g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 174 (936)
.+|+|+|.+++..++. +.++|++++||+|||++++..+...... +...++|||||+ .|+.|+.+++.+..
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~-------g~~~rvLIVvP~-sLl~Qw~~E~~~~f 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS-------GAAERVLIIVPE-TLQHQWLVEMLRRF 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT-------SSCCCEEEECCT-TTHHHHHHHHHHHS
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh-------CCCCeEEEEeCH-HHHHHHHHHHHHHh
Confidence 3789999999998876 4588999999999999987766544422 234479999999 99999999996632
Q ss_pred CCCCEEEEEeCCccchHHHH---HhhcCCcEEEeCCchhHHHHHc-CCcCCCCceEEEEccchhhhcCCCH--HHHHHHH
Q psy7557 175 YKGLKAVCVYGGKEIEPQLE---KIREGCHILIATPGRLNDFVSR-ASIDLKAVSFVVLDEADRMLDLGFE--PQINKTS 248 (936)
Q Consensus 175 ~~~~~~~~~~gg~~~~~~~~---~~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~~~lViDEah~l~~~~~~--~~~~~i~ 248 (936)
++++..+.|+.. ..... ......+|+|+|++.+...... ..+...++++||+||||++...+.. .....+.
T Consensus 224 --~l~v~v~~~~~~-~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~ 300 (968)
T 3dmq_A 224 --NLRFALFDDERY-AEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIE 300 (968)
T ss_dssp --CCCCEECCHHHH-HHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHH
T ss_pred --CCCEEEEccchh-hhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHH
Confidence 455555444322 11111 1112469999999877432111 1133557899999999999754421 1122222
Q ss_pred hhcCCCCcEEEEEeccch----HHHHHHHH----------------------------hcCC------------------
Q psy7557 249 IYINPNRQTVMTSATWNK----DVQRVAKK----------------------------YMVN------------------ 278 (936)
Q Consensus 249 ~~~~~~~q~~~~SAT~~~----~~~~~~~~----------------------------~~~~------------------ 278 (936)
.......+++++|||+.. ++..+... +...
T Consensus 301 ~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~ 380 (968)
T 3dmq_A 301 QLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQ 380 (968)
T ss_dssp HHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTT
T ss_pred HHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcch
Confidence 223345679999999742 11111100 0000
Q ss_pred ----------------------------------CEEEEeCCCCcc-c-CCceEEEE-----------------------
Q psy7557 279 ----------------------------------PVKVNVGSLDLA-A-THTVTQKI----------------------- 299 (936)
Q Consensus 279 ----------------------------------~~~i~~~~~~~~-~-~~~~~~~~----------------------- 299 (936)
.+.+........ . ........
T Consensus 381 ~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (968)
T 3dmq_A 381 DIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSA 460 (968)
T ss_dssp CSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSG
T ss_pred hhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhh
Confidence 000000000000 0 00000000
Q ss_pred ----------------------EEeCchhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhh-cCCceeeecCCC
Q psy7557 300 ----------------------IILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLAC-QYRKSCSLYGDL 356 (936)
Q Consensus 300 ----------------------~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~-~~~~~~~~h~~~ 356 (936)
..+....|...+.+++.. ..+.++||||+++..++.++..|.. .|+++..+||+|
T Consensus 461 ~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~ 538 (968)
T 3dmq_A 461 EDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGM 538 (968)
T ss_dssp GGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTS
T ss_pred HHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 112234577778888876 3578999999999999999999994 599999999999
Q ss_pred CHHHHHHHHHHhhcCC--cEEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccChhhH
Q psy7557 357 SQEDREIALEDITSGY--ARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHA 434 (936)
Q Consensus 357 ~~~~R~~~~~~f~~g~--~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~ 434 (936)
++.+|..+++.|++|+ ++|||||+++++|+|+|++++||+||+|.++..|+||+||+||.|+.|.++++....+....
T Consensus 539 ~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~e 618 (968)
T 3dmq_A 539 SIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQ 618 (968)
T ss_dssp CTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHH
T ss_pred CHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHH
Confidence 9999999999999998 99999999999999999999999999999999999999999999999977776555444444
Q ss_pred HhHHHHHhh
Q psy7557 435 HEIIPILEE 443 (936)
Q Consensus 435 ~~l~~~l~~ 443 (936)
..+.+.+.+
T Consensus 619 e~i~~~~~~ 627 (968)
T 3dmq_A 619 SVLVRWYHE 627 (968)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 445555543
No 135
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.97 E-value=3.2e-30 Score=300.46 Aligned_cols=311 Identities=16% Similarity=0.208 Sum_probs=216.7
Q ss_pred CCcHHHHHHHHHH----hcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhc
Q psy7557 98 TPSPIQAQAWPIL----MSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 173 (936)
Q Consensus 98 ~~~~~Q~~ai~~~----~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 173 (936)
.|+|+|.++++.+ ..+++.+++.+||+|||++++. ++..+... ....++||+||+ +|+.|+.++++++
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~-~i~~~~~~------~~~~~~LIv~P~-~l~~qw~~e~~~~ 108 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIA-VFSDAKKE------NELTPSLVICPL-SVLKNWEEELSKF 108 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHH-HHHHHHHT------TCCSSEEEEECS-TTHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHH-HHHHHHhc------CCCCCEEEEccH-HHHHHHHHHHHHH
Confidence 7999999999876 3578999999999999999654 44444321 234579999995 6899999999997
Q ss_pred cCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHHHhhcCC
Q psy7557 174 DYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINP 253 (936)
Q Consensus 174 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~ 253 (936)
.. +.++..++|+... ......+|+|+|++++..... +....+++||+||||++.+.+. ...+.+..++
T Consensus 109 ~~-~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~~--~~~~~l~~l~- 176 (500)
T 1z63_A 109 AP-HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQT--KIFKAVKELK- 176 (500)
T ss_dssp CT-TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTTS--HHHHHHHTSC-
T ss_pred CC-CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHhH--HHHHHHHhhc-
Confidence 53 4666666665432 112347999999998854332 2344689999999999976542 2233333343
Q ss_pred CCcEEEEEeccchH-HH---HHHH---------------------------------HhcCCCEEEEeCCCC----cccC
Q psy7557 254 NRQTVMTSATWNKD-VQ---RVAK---------------------------------KYMVNPVKVNVGSLD----LAAT 292 (936)
Q Consensus 254 ~~q~~~~SAT~~~~-~~---~~~~---------------------------------~~~~~~~~i~~~~~~----~~~~ 292 (936)
..+.+++|||+..+ .. .+.. .++ .|..+.....+ ...+
T Consensus 177 ~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l-~~~~lrr~k~~~~~~~~lp 255 (500)
T 1z63_A 177 SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII-SPFILRRTKYDKAIINDLP 255 (500)
T ss_dssp EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH-TTTEECCCTTCHHHHTTSC
T ss_pred cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH-hhHeeeecccccchhhcCC
Confidence 45789999998432 11 1111 111 12222111100 0111
Q ss_pred CceEEEEEEeC---------------------------------------------------------chhhHHHHHHHH
Q psy7557 293 HTVTQKIIILD---------------------------------------------------------EDEKKDWLMEFF 315 (936)
Q Consensus 293 ~~~~~~~~~~~---------------------------------------------------------~~~k~~~l~~~l 315 (936)
... ...+.+. ...|...+.+++
T Consensus 256 ~~~-~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l 334 (500)
T 1z63_A 256 DKI-ETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEII 334 (500)
T ss_dssp SEE-EEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHH
T ss_pred CCe-EEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHH
Confidence 111 1122221 123444555666
Q ss_pred HhccCCCCcEEEEeCchHHHHHHHHHhhhc-CCceeeecCCCCHHHHHHHHHHhhcC-CcE-EEEEecccccCCCCCCCc
Q psy7557 316 DNMDEERDKVMVFMGRKASVSAMSSDLACQ-YRKSCSLYGDLSQEDREIALEDITSG-YAR-ICVATDVASRGLDVPDLT 392 (936)
Q Consensus 316 ~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~-~~~~~~~h~~~~~~~R~~~~~~f~~g-~~~-vLvaT~~~~~GiDip~v~ 392 (936)
......+.++||||+++..++.++..|... +..+..+||++++.+|..+++.|++| ..+ +|+||+++++|+|+|+++
T Consensus 335 ~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~ 414 (500)
T 1z63_A 335 EEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSAN 414 (500)
T ss_dssp HHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCS
T ss_pred HHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCC
Confidence 655556789999999999999999999885 89999999999999999999999998 555 799999999999999999
Q ss_pred EEEEecCCCCccccccCCCCcccCCCceeE--EEEecccC
Q psy7557 393 HVINYDFPSHIEEYVHRVGRTGRAGKSGES--ITLMTRKD 430 (936)
Q Consensus 393 ~VI~~d~p~s~~~y~qr~GRagR~g~~g~~--~~~~~~~~ 430 (936)
+||+||+|.++..|.||+||++|.|+.+.+ +.+++.+.
T Consensus 415 ~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~t 454 (500)
T 1z63_A 415 RVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 454 (500)
T ss_dssp EEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTS
T ss_pred EEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCC
Confidence 999999999999999999999999987655 55566553
No 136
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.97 E-value=3.7e-30 Score=314.60 Aligned_cols=312 Identities=13% Similarity=0.089 Sum_probs=213.4
Q ss_pred CCcHHHHHHHHHHhc--------------CCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHH
Q psy7557 98 TPSPIQAQAWPILMS--------------GHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELA 163 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~~--------------g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La 163 (936)
.|+|+|.+|++.++. +++.+++++||||||+++ ++++..+... ...+++|||+|+++|+
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~------~~~~rvLvlvpr~eL~ 343 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL------DFIDKVFFVVDRKDLD 343 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC------TTCCEEEEEECGGGCC
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc------CCCceEEEEeCcHHHH
Confidence 599999999998875 368999999999999997 5665443211 2346999999999999
Q ss_pred HHHHHHHHhccCCCCEEEEEeCCccchHHHHHhh-cCCcEEEeCCchhHHHHHcCC--cCCCCceEEEEccchhhhcCCC
Q psy7557 164 TQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIR-EGCHILIATPGRLNDFVSRAS--IDLKAVSFVVLDEADRMLDLGF 240 (936)
Q Consensus 164 ~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~--~~~~~~~~lViDEah~l~~~~~ 240 (936)
.|+.+.++.+.... +.++.+.......+. .+++|+|+||+++.+++.... ..++...+||+||||++...
T Consensus 344 ~Q~~~~f~~f~~~~-----v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~-- 416 (1038)
T 2w00_A 344 YQTMKEYQRFSPDS-----VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG-- 416 (1038)
T ss_dssp HHHHHHHHTTSTTC-----SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH--
T ss_pred HHHHHHHHHhcccc-----cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch--
Confidence 99999999975432 235555555555554 458999999999998876542 24567899999999998643
Q ss_pred HHHHHHHHhhcCCCCcEEEEEeccchHH--------H-------------HHHHHhcCCCEEEEeCCCCccc-----C-C
Q psy7557 241 EPQINKTSIYINPNRQTVMTSATWNKDV--------Q-------------RVAKKYMVNPVKVNVGSLDLAA-----T-H 293 (936)
Q Consensus 241 ~~~~~~i~~~~~~~~q~~~~SAT~~~~~--------~-------------~~~~~~~~~~~~i~~~~~~~~~-----~-~ 293 (936)
.....+...++ +.++++||||+.... . +.......-|..+......... . .
T Consensus 417 -~~~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d 494 (1038)
T 2w00_A 417 -EAQKNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETD 494 (1038)
T ss_dssp -HHHHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCC
T ss_pred -HHHHHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhcccccc
Confidence 33455555554 589999999987421 1 1122222223332221100000 0 0
Q ss_pred -----ceEEEEEEeCchhhHHHHHH-HHHhcc---------CCCCcEEEEeCchHHHHHHHHHhhhcC------------
Q psy7557 294 -----TVTQKIIILDEDEKKDWLME-FFDNMD---------EERDKVMVFMGRKASVSAMSSDLACQY------------ 346 (936)
Q Consensus 294 -----~~~~~~~~~~~~~k~~~l~~-~l~~~~---------~~~~~~iVF~~~~~~~~~l~~~L~~~~------------ 346 (936)
.+.+.. ......+...+.. ++..+. ..+.++||||+++..|..+++.|...+
T Consensus 495 ~~~~~~i~~~~-~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~ 573 (1038)
T 2w00_A 495 EKKLSAAENQQ-AFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKP 573 (1038)
T ss_dssp HHHHHHTCSTT-TTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCC
T ss_pred HHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhccccccccc
Confidence 000000 0011222233332 222210 134689999999999999999997754
Q ss_pred Cce-eeecCC----------C----------CH-----------------------------HHHHHHHHHhhcCCcEEE
Q psy7557 347 RKS-CSLYGD----------L----------SQ-----------------------------EDREIALEDITSGYARIC 376 (936)
Q Consensus 347 ~~~-~~~h~~----------~----------~~-----------------------------~~R~~~~~~f~~g~~~vL 376 (936)
.++ ..+||+ + ++ .+|..++++|++|+++||
T Consensus 574 ~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~IL 653 (1038)
T 2w00_A 574 LRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLL 653 (1038)
T ss_dssp CCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEE
T ss_pred CcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEE
Confidence 444 445542 2 32 248889999999999999
Q ss_pred EEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCc----eeEEEEec
Q psy7557 377 VATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKS----GESITLMT 427 (936)
Q Consensus 377 vaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~----g~~~~~~~ 427 (936)
|+|+++.+|+|+|.+ .|+++|.|.+...|+|++||+||.+.. |..+.|+.
T Consensus 654 Ivvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 654 IVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp EESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred EEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 999999999999999 678999999999999999999998753 66776664
No 137
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.97 E-value=2.8e-30 Score=319.27 Aligned_cols=306 Identities=15% Similarity=0.134 Sum_probs=211.7
Q ss_pred CCcHHHHHHHHhhhc--CCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhccC
Q psy7557 618 TPSPIQAQAWPILMS--GHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDY 695 (936)
Q Consensus 618 ~p~~iQ~~ai~~~l~--g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 695 (936)
.|+|+|.+++..++. +.++|++++||+|||++++..+...... +...++|||||+ .|+.|+.+.+.+..
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~-------g~~~rvLIVvP~-sLl~Qw~~E~~~~f- 223 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS-------GAAERVLIIVPE-TLQHQWLVEMLRRF- 223 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT-------SSCCCEEEECCT-TTHHHHHHHHHHHS-
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh-------CCCCeEEEEeCH-HHHHHHHHHHHHHh-
Confidence 799999999998886 4589999999999999988776654432 334579999999 99999999996643
Q ss_pred CCCEEEEEECCccchHHHHH---HhcCceEEEeCchHHHHHHHc-CCCCCCCceEEEEcccchhccCCCH--HHHHHHhh
Q psy7557 696 KGLKAVCVYGGKELEPQLEK---IREGCHILIATPGRLNDFVSR-ASIDLKAVSFVVLDEADRMLDLGFE--PQINKTSI 769 (936)
Q Consensus 696 ~~~~~~~~~gg~~~~~~~~~---l~~~~~IiV~Tp~~l~~~l~~-~~~~~~~i~~lViDEah~l~~~~~~--~~~~~i~~ 769 (936)
++++..+.|+.. ...... .....+|+|+|++.+...... ..+...++++||+||||++...+.. ..+..+..
T Consensus 224 -~l~v~v~~~~~~-~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~ 301 (968)
T 3dmq_A 224 -NLRFALFDDERY-AEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQ 301 (968)
T ss_dssp -CCCCEECCHHHH-HHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHH
T ss_pred -CCCEEEEccchh-hhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHH
Confidence 455544443321 111111 112368999999877532111 1123457899999999998754422 22333333
Q ss_pred hcCCCceEEEEEecCCh----HHHHHHHHhcCC-----------------------------------------------
Q psy7557 770 YINPNRQTVMTSATWNK----DVQRVAKKYMVN----------------------------------------------- 798 (936)
Q Consensus 770 ~~~~~~q~v~~SAT~~~----~~~~~~~~~~~~----------------------------------------------- 798 (936)
......+++++|||+.. ++..+...+...
T Consensus 302 L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~ 381 (968)
T 3dmq_A 302 LAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQD 381 (968)
T ss_dssp HHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTC
T ss_pred HhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchh
Confidence 33345679999999742 111111100000
Q ss_pred ---------------------------------CeEEEeCCCCccc--CCceEEEE------------------------
Q psy7557 799 ---------------------------------PVKVNVGSLDLAA--THTVTQKI------------------------ 819 (936)
Q Consensus 799 ---------------------------------~~~i~~~~~~~~~--~~~~~~~~------------------------ 819 (936)
.+.+......... ........
T Consensus 382 ~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (968)
T 3dmq_A 382 IEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAE 461 (968)
T ss_dssp SSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGG
T ss_pred hHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhH
Confidence 0000000000000 00000000
Q ss_pred ---------------------EEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHh-cCCceEEEeCCCC
Q psy7557 820 ---------------------IILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLAC-QYRKSCSLYGDLS 877 (936)
Q Consensus 820 ---------------------~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~-~~~~~~~~h~~l~ 877 (936)
..+....|...+..++.. ....++||||+++..++.++..|.. .++.+..+||+|+
T Consensus 462 ~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~ 539 (968)
T 3dmq_A 462 DRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMS 539 (968)
T ss_dssp GGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSC
T ss_pred HHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 112334577788888876 3567999999999999999999994 5999999999999
Q ss_pred HHHHHHHHHHhhcCC--CcEEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 878 QEDREIALEDITSGY--ARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 878 ~~~R~~~~~~F~~g~--~~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
+.+|..+++.|++|+ ++|||||+++++|+|+|++++||+||+|.+...|+||+||+||.
T Consensus 540 ~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~ 600 (968)
T 3dmq_A 540 IIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRI 600 (968)
T ss_dssp TTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccC
Confidence 999999999999998 99999999999999999999999999999999999999999995
No 138
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.96 E-value=2.1e-28 Score=276.92 Aligned_cols=304 Identities=18% Similarity=0.206 Sum_probs=225.6
Q ss_pred CCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc
Q psy7557 614 LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693 (936)
Q Consensus 614 ~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 693 (936)
+|. .|+++|..+.-.+..|+ |+...||+|||++|.+|++...+ .|..|.|++|++.||.|-.+.+..+
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL---------~G~~vhVvT~ndyLA~rdae~m~~l 139 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNAL---------IGKGVHLVTVNDYLARRDALWMGPV 139 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHT---------TSSCEEEEESSHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHh---------cCCceEEEeccHHHHHhHHHHHHHH
Confidence 677 89999999999888887 99999999999999999986653 3667999999999999999988876
Q ss_pred -cCCCCEEEEEECC--------------------------------------------------ccchHHHHHHhcCceE
Q psy7557 694 -DYKGLKAVCVYGG--------------------------------------------------KELEPQLEKIREGCHI 722 (936)
Q Consensus 694 -~~~~~~~~~~~gg--------------------------------------------------~~~~~~~~~l~~~~~I 722 (936)
...|+++++++.. .+.... +-.-.|||
T Consensus 140 ~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~er--r~aY~~DI 217 (822)
T 3jux_A 140 YLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITR--KEAYLCDV 217 (822)
T ss_dssp HHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCH--HHHHHSSE
T ss_pred HHHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHH--HHHhcCCC
Confidence 5789999999872 111111 11123899
Q ss_pred EEeCchHHH-HHHHcC------CCCCCCceEEEEcccchhc-cC--------C-------CHHHHHHHhhhc--------
Q psy7557 723 LIATPGRLN-DFVSRA------SIDLKAVSFVVLDEADRML-DL--------G-------FEPQINKTSIYI-------- 771 (936)
Q Consensus 723 iV~Tp~~l~-~~l~~~------~~~~~~i~~lViDEah~l~-~~--------~-------~~~~~~~i~~~~-------- 771 (936)
+.+|..-+- +.|+.+ ..-.+.+.+.|+||+|.++ |. | ....+..+...+
T Consensus 218 tYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~v 297 (822)
T 3jux_A 218 TYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTV 297 (822)
T ss_dssp EEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEE
T ss_pred EEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEE
Confidence 999998763 344432 1224678999999999654 10 0 000111110000
Q ss_pred ------------------------------------------------CCC-----------------------------
Q psy7557 772 ------------------------------------------------NPN----------------------------- 774 (936)
Q Consensus 772 ------------------------------------------------~~~----------------------------- 774 (936)
..+
T Consensus 298 dek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~G 377 (822)
T 3jux_A 298 DEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGG 377 (822)
T ss_dssp CCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGG
T ss_pred EcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchH
Confidence 000
Q ss_pred --------------------------------ceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEc
Q psy7557 775 --------------------------------RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIIL 822 (936)
Q Consensus 775 --------------------------------~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 822 (936)
..+.+||+|.......+.+.|..+ .+.+.... +......+..++.
T Consensus 378 LHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~IPtnk-p~~R~d~~d~vy~ 454 (822)
T 3jux_A 378 LHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVIPTHK-PMIRKDHDDLVFR 454 (822)
T ss_dssp HHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEECCCSS-CCCCEECCCEEES
T ss_pred HHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEECCCC-CcceeecCcEEEe
Confidence 278999999988777777777543 33333221 1112122235677
Q ss_pred CcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccC
Q psy7557 823 DEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVA 902 (936)
Q Consensus 823 ~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~ 902 (936)
....|...+...+......+.|+||||+|+..++.++..|...++.+..+||+..+.+|..+...|+.| .|+|||+++
T Consensus 455 t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmA 532 (822)
T 3jux_A 455 TQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMA 532 (822)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTT
T ss_pred cHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchh
Confidence 888899999988877544567999999999999999999999999999999996666666666666666 699999999
Q ss_pred ccCCCCC--------CCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 903 SRGLDVP--------DLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 903 ~~Gidip--------~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
+||+||+ +..+||+|++|.|.+.|+||+|||||+
T Consensus 533 gRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRq 574 (822)
T 3jux_A 533 GRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQ 574 (822)
T ss_dssp TTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCS
T ss_pred hCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccC
Confidence 9999998 667999999999999999999999995
No 139
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.96 E-value=6.5e-29 Score=289.37 Aligned_cols=298 Identities=16% Similarity=0.184 Sum_probs=207.2
Q ss_pred CCcHHHHHHHHhhh----cCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc
Q psy7557 618 TPSPIQAQAWPILM----SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693 (936)
Q Consensus 618 ~p~~iQ~~ai~~~l----~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 693 (936)
.|+|+|.+++..+. .+++.|+..+||+|||++++..+. .+... ....++|||||+ +|+.|+.++++++
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~-~~~~~------~~~~~~LIv~P~-~l~~qw~~e~~~~ 108 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFS-DAKKE------NELTPSLVICPL-SVLKNWEEELSKF 108 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHH-HHHHT------TCCSSEEEEECS-TTHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHH-HHHhc------CCCCCEEEEccH-HHHHHHHHHHHHH
Confidence 79999999998763 578999999999999998765443 33221 335679999995 6889999999998
Q ss_pred cCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHHHhhhcCC
Q psy7557 694 DYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINP 773 (936)
Q Consensus 694 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~~~ 773 (936)
. .+.++...+|+.... ....++|+|+|++.+..... +....+++||+||||++...+. ........+ +
T Consensus 109 ~-~~~~v~~~~g~~~~~-----~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~~--~~~~~l~~l-~ 176 (500)
T 1z63_A 109 A-PHLRFAVFHEDRSKI-----KLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQT--KIFKAVKEL-K 176 (500)
T ss_dssp C-TTSCEEECSSSTTSC-----CGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTTS--HHHHHHHTS-C
T ss_pred C-CCceEEEEecCchhc-----cccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHhH--HHHHHHHhh-c
Confidence 5 356666666654321 12347999999999865432 2344689999999999865442 222333333 3
Q ss_pred CceEEEEEecCChH-HHH---HHHHhc--------------------------------CCCeEEEeCCCC----cccCC
Q psy7557 774 NRQTVMTSATWNKD-VQR---VAKKYM--------------------------------VNPVKVNVGSLD----LAATH 813 (936)
Q Consensus 774 ~~q~v~~SAT~~~~-~~~---~~~~~~--------------------------------~~~~~i~~~~~~----~~~~~ 813 (936)
..+.+++|||+..+ ..+ +...+. ..|..+.....+ ...+.
T Consensus 177 ~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~ 256 (500)
T 1z63_A 177 SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPD 256 (500)
T ss_dssp EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCS
T ss_pred cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCC
Confidence 45789999997432 111 111110 122222111100 00111
Q ss_pred ceEEEEEEcC---------------------------------------------------------cchhHHHHHHHHH
Q psy7557 814 TVTQKIIILD---------------------------------------------------------EDEKKDWLMEFFD 836 (936)
Q Consensus 814 ~~~~~~~~~~---------------------------------------------------------~~~k~~~l~~~l~ 836 (936)
.......+. ...|...+.+++.
T Consensus 257 -~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~ 335 (500)
T 1z63_A 257 -KIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIE 335 (500)
T ss_dssp -EEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHH
T ss_pred -CeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHH
Confidence 111111111 1234455566666
Q ss_pred hccCCCCcEEEEcCChHHHHHHHHHHHhc-CCceEEEeCCCCHHHHHHHHHHhhcC-CCc-EEEecccCccCCCCCCCCE
Q psy7557 837 NMDEERDKVMVFMGRKASVSAMSSDLACQ-YRKSCSLYGDLSQEDREIALEDITSG-YAR-ICVATDVASRGLDVPDLTH 913 (936)
Q Consensus 837 ~~~~~~~~~iIF~~s~~~~~~l~~~L~~~-~~~~~~~h~~l~~~~R~~~~~~F~~g-~~~-vLVaT~~~~~Gidip~v~~ 913 (936)
.....+.++||||+++..++.++..|... +..+..+||++++.+|..+++.|++| ..+ +|+||+++++|+|+|++++
T Consensus 336 ~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~ 415 (500)
T 1z63_A 336 EALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANR 415 (500)
T ss_dssp HHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSE
T ss_pred HHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCE
Confidence 65566789999999999999999999885 89999999999999999999999998 555 8999999999999999999
Q ss_pred EEEccCCCChhhhHhhhhhccCC
Q psy7557 914 VINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 914 VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
||+||+|.++..|+||+||++|.
T Consensus 416 vi~~d~~~~~~~~~Q~~gR~~R~ 438 (500)
T 1z63_A 416 VIHFDRWWNPAVEDQATDRVYRI 438 (500)
T ss_dssp EEESSCCSCC---CHHHHTTTTT
T ss_pred EEEeCCCCCcchHHHHHHHHHHc
Confidence 99999999999999999999994
No 140
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.96 E-value=2.5e-29 Score=307.25 Aligned_cols=301 Identities=12% Similarity=0.075 Sum_probs=206.0
Q ss_pred CCcHHHHHHHHhhhc--------------CCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHH
Q psy7557 618 TPSPIQAQAWPILMS--------------GHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELA 683 (936)
Q Consensus 618 ~p~~iQ~~ai~~~l~--------------g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La 683 (936)
.|+|+|.+|++.++. +++.+++++||||||+++ ++++..+.. ....+++|||+|+++|+
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~------~~~~~rvLvlvpr~eL~ 343 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE------LDFIDKVFFVVDRKDLD 343 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT------CTTCCEEEEEECGGGCC
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh------cCCCceEEEEeCcHHHH
Confidence 699999999999875 368999999999999997 566544321 12346999999999999
Q ss_pred HHHHHHHHhccCCCCEEEEEECCccchHHHHHHh-cCceEEEeCchHHHHHHHcCC--CCCCCceEEEEcccchhccCCC
Q psy7557 684 TQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIR-EGCHILIATPGRLNDFVSRAS--IDLKAVSFVVLDEADRMLDLGF 760 (936)
Q Consensus 684 ~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~~IiV~Tp~~l~~~l~~~~--~~~~~i~~lViDEah~l~~~~~ 760 (936)
.|+.+.+..+... .+.++.+.......+. .+++|+|+||+++..++.... ..++...+||+||||++...
T Consensus 344 ~Q~~~~f~~f~~~-----~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~-- 416 (1038)
T 2w00_A 344 YQTMKEYQRFSPD-----SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG-- 416 (1038)
T ss_dssp HHHHHHHHTTSTT-----CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH--
T ss_pred HHHHHHHHHhccc-----ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch--
Confidence 9999999997543 1345555565656664 468999999999998876542 23567899999999997643
Q ss_pred HHHHHHHhhhcCCCceEEEEEecCChHH--------HH-------------HHHHhcCCCeEEEeCCCCccc-----C-C
Q psy7557 761 EPQINKTSIYINPNRQTVMTSATWNKDV--------QR-------------VAKKYMVNPVKVNVGSLDLAA-----T-H 813 (936)
Q Consensus 761 ~~~~~~i~~~~~~~~q~v~~SAT~~~~~--------~~-------------~~~~~~~~~~~i~~~~~~~~~-----~-~ 813 (936)
.....+...+ ++.++++||||+.... .. ........|..+......... . .
T Consensus 417 -~~~~~I~~~~-p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d 494 (1038)
T 2w00_A 417 -EAQKNLKKKF-KRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETD 494 (1038)
T ss_dssp -HHHHHHHHHC-SSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCC
T ss_pred -HHHHHHHHhC-CcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhcccccc
Confidence 2344555555 4589999999986421 11 111122223333222100000 0 0
Q ss_pred -----ceEEEEEEcCcchhHHHHHH-HHHhcc---------CCCCcEEEEcCChHHHHHHHHHHHhcC------------
Q psy7557 814 -----TVTQKIIILDEDEKKDWLME-FFDNMD---------EERDKVMVFMGRKASVSAMSSDLACQY------------ 866 (936)
Q Consensus 814 -----~~~~~~~~~~~~~k~~~l~~-~l~~~~---------~~~~~~iIF~~s~~~~~~l~~~L~~~~------------ 866 (936)
.+.+. .......+...+.. ++..+. ..+.++||||+|+..|..++..|...+
T Consensus 495 ~~~~~~i~~~-~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~ 573 (1038)
T 2w00_A 495 EKKLSAAENQ-QAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKP 573 (1038)
T ss_dssp HHHHHHTCST-TTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCC
T ss_pred HHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhccccccccc
Confidence 00000 00011222233332 222210 134579999999999999999998754
Q ss_pred Cce-EEEeCC----------C----------CH-----------------------------HHHHHHHHHhhcCCCcEE
Q psy7557 867 RKS-CSLYGD----------L----------SQ-----------------------------EDREIALEDITSGYARIC 896 (936)
Q Consensus 867 ~~~-~~~h~~----------l----------~~-----------------------------~~R~~~~~~F~~g~~~vL 896 (936)
..+ ..+||+ + ++ ..|..++++|++|+++||
T Consensus 574 ~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~IL 653 (1038)
T 2w00_A 574 LRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLL 653 (1038)
T ss_dssp CCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEE
T ss_pred CcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEE
Confidence 344 445542 2 22 248889999999999999
Q ss_pred EecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 897 VATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 897 VaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
|+|+++.+|+|+|.+ +|+++|.|.+...|+||+||+||.
T Consensus 654 Ivvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~ 692 (1038)
T 2w00_A 654 IVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRI 692 (1038)
T ss_dssp EESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCC
T ss_pred EEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcC
Confidence 999999999999999 788999999999999999999994
No 141
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.96 E-value=1.7e-27 Score=274.33 Aligned_cols=319 Identities=18% Similarity=0.171 Sum_probs=235.5
Q ss_pred hCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHh
Q psy7557 93 NLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK 172 (936)
Q Consensus 93 ~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 172 (936)
.+|| +|+|+|..++|.+++|+ ++.++||+|||++|.+|++...+ .|..++|++||++||.|+++.+..
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL---------~G~qv~VvTPTreLA~Qdae~m~~ 142 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL---------TGKGVHVVTVNDYLARRDAEWMGP 142 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT---------TCSCCEEEESSHHHHHHHHHHHHH
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH---------hCCCEEEEeCCHHHHHHHHHHHHH
Confidence 3899 99999999999999998 99999999999999999976553 255799999999999999999999
Q ss_pred c-cCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchh-HHHHHcCC------cCCC---CceEEEEccchhhh-cCCC
Q psy7557 173 I-DYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRL-NDFVSRAS------IDLK---AVSFVVLDEADRML-DLGF 240 (936)
Q Consensus 173 ~-~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~------~~~~---~~~~lViDEah~l~-~~~~ 240 (936)
+ ...|+++.+++||.+. +......+++|+||||+++ .|++..+. +.++ .+.++|+||||.|+ +.+.
T Consensus 143 l~~~lGLsv~~i~Gg~~~--~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDear 220 (997)
T 2ipc_A 143 VYRGLGLSVGVIQHASTP--AERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEAR 220 (997)
T ss_dssp HHHTTTCCEEECCTTCCH--HHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSSTT
T ss_pred HHHhcCCeEEEEeCCCCH--HHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCCC
Confidence 6 5789999999999874 3344445799999999999 78887663 4577 89999999999987 2221
Q ss_pred ---------------HHHHHHHHhhcCC----------------------------------------------------
Q psy7557 241 ---------------EPQINKTSIYINP---------------------------------------------------- 253 (936)
Q Consensus 241 ---------------~~~~~~i~~~~~~---------------------------------------------------- 253 (936)
...+..+...++.
T Consensus 221 tPLIISgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~~l 300 (997)
T 2ipc_A 221 TPLIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMEL 300 (997)
T ss_dssp SCEEEEESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCHHH
T ss_pred CCeeeeCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhHHH
Confidence 0111111111110
Q ss_pred -----------------------------------------------------------------------------CCc
Q psy7557 254 -----------------------------------------------------------------------------NRQ 256 (936)
Q Consensus 254 -----------------------------------------------------------------------------~~q 256 (936)
...
T Consensus 301 ~~~i~~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~k 380 (997)
T 2ipc_A 301 AHMLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEK 380 (997)
T ss_dssp HHHHHHHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSSE
T ss_pred HHHHHHHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhChH
Confidence 004
Q ss_pred EEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCchHHHH
Q psy7557 257 TVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVS 336 (936)
Q Consensus 257 ~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~ 336 (936)
+.+||.|...+...+.+.|..+.+.|.... .....-....++....+|...+.+.+......+.|+||+|.|....+
T Consensus 381 LsGMTGTA~tE~~Ef~~iY~l~Vv~IPTn~---p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE 457 (997)
T 2ipc_A 381 RAGMTGTAKTEEKEFQEIYGMDVVVVPTNR---PVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSE 457 (997)
T ss_dssp EEEEESSCGGGHHHHHHHHCCCEEECCCSS---CCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHH
T ss_pred heecCCCchHHHHHHHHHhCCCEEEcCCCC---CcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHH
Confidence 677888887777777777766643332211 11111233455667788888888877776677899999999999999
Q ss_pred HHHHHhh-------------------------------------------------------------------------
Q psy7557 337 AMSSDLA------------------------------------------------------------------------- 343 (936)
Q Consensus 337 ~l~~~L~------------------------------------------------------------------------- 343 (936)
.++..|.
T Consensus 458 ~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 537 (997)
T 2ipc_A 458 RLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTL 537 (997)
T ss_dssp HHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhhhh
Confidence 9999998
Q ss_pred ---hcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCC-------------------c---------
Q psy7557 344 ---CQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDL-------------------T--------- 392 (936)
Q Consensus 344 ---~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v-------------------~--------- 392 (936)
..+++...+.+.-...+-.-+-+.=+. -.|-|||+.++||.||.=- .
T Consensus 538 ~~~~~gI~H~VLNAK~he~EAeIIAqAG~~--GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (997)
T 2ipc_A 538 AVLRQGIPHQVLNAKHHAREAEIVAQAGRS--KTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKK 615 (997)
T ss_dssp HHHHHCCCCCEECSSSHHHHHHHHHTTTST--TCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHH
T ss_pred HHHHcCCCeeeccccchHHHHHHHHhcCCC--CeEEEEecccCCCcCeecCCCHHHHHHHHHHhhccccccccccccccc
Confidence 345555555544322222222222223 3599999999999999532 1
Q ss_pred ----------------------------------------------EEEEecCCCCccccccCCCCcccCCCceeEEEEe
Q psy7557 393 ----------------------------------------------HVINYDFPSHIEEYVHRVGRTGRAGKSGESITLM 426 (936)
Q Consensus 393 ----------------------------------------------~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~ 426 (936)
+||-...+.|..-=.|-.||+||-|.+|.+-.|+
T Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~L 695 (997)
T 2ipc_A 616 MVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYV 695 (997)
T ss_dssp HHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEE
T ss_pred ccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEEEE
Confidence 7888888888888899999999999999999999
Q ss_pred cccC
Q psy7557 427 TRKD 430 (936)
Q Consensus 427 ~~~~ 430 (936)
+-+|
T Consensus 696 SLeD 699 (997)
T 2ipc_A 696 SFDD 699 (997)
T ss_dssp ESSS
T ss_pred ECCh
Confidence 8776
No 142
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.95 E-value=8.9e-28 Score=284.81 Aligned_cols=178 Identities=18% Similarity=0.137 Sum_probs=137.5
Q ss_pred CCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCch
Q psy7557 253 PNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRK 332 (936)
Q Consensus 253 ~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~ 332 (936)
...|++++|||+++..... ........+..... .. ..+.+.....+...+...+......+.++||||+|+
T Consensus 379 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l--~~---p~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 449 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAH----SGRVVEQIIRPTGL--LD---PLVRVKPTENQILDLMEGIRERAARGERTLVTVLTV 449 (664)
T ss_dssp TCSEEEEEESSCCHHHHHH----CSEEEEECSCTTCC--CC---CEEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred hcCCEEEEecCCCHHHHHh----hhCeeeeeeccCCC--CC---CeEEEecccchHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 3679999999998654222 11111111111111 11 112233334455556565655444578999999999
Q ss_pred HHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEecC-----CCCccccc
Q psy7557 333 ASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDF-----PSHIEEYV 407 (936)
Q Consensus 333 ~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~-----p~s~~~y~ 407 (936)
..++.+++.|...++++..+||+|++.+|..+++.|+.|+++|||||+++++|+|+|++++||++|. |.|..+|+
T Consensus 450 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~i 529 (664)
T 1c4o_A 450 RMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 529 (664)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHH
T ss_pred HHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 89999999
Q ss_pred cCCCCcccCCCceeEEEEecccChhhHHhHHHH
Q psy7557 408 HRVGRTGRAGKSGESITLMTRKDWSHAHEIIPI 440 (936)
Q Consensus 408 qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~ 440 (936)
||+|||||.| .|.+++|+++.+......+.+.
T Consensus 530 Qr~GRagR~~-~G~~i~~~~~~~~~~~~~i~~~ 561 (664)
T 1c4o_A 530 QTIGRAARNA-RGEVWLYADRVSEAMQRAIEET 561 (664)
T ss_dssp HHHGGGTTST-TCEEEEECSSCCHHHHHHHHHH
T ss_pred HHHCccCcCC-CCEEEEEEcCCCHHHHHHHHHH
Confidence 9999999995 8999999998876655555443
No 143
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.95 E-value=1.5e-27 Score=237.85 Aligned_cols=176 Identities=33% Similarity=0.507 Sum_probs=145.2
Q ss_pred HHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeee
Q psy7557 273 KKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSL 352 (936)
Q Consensus 273 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~ 352 (936)
..|+.+|..+.++... .....+.|.+..++...|...|.+++... .+++||||+++..++.++..|...++.+..+
T Consensus 9 ~~~~~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~K~~~L~~~l~~~---~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~l 84 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMG-AASLDVIQEVEYVKEEAKMVYLLECLQKT---PPPVLIFAEKKADVDAIHEYLLLKGVEAVAI 84 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTTS---CSCEEEECSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred ccccCCCEEEEECCCC-CCCcCceEEEEEcChHHHHHHHHHHHHhC---CCCEEEEECCHHHHHHHHHHHHHcCCcEEEE
Confidence 4578889888887655 44568999999999999999999988764 4689999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEeccc-Ch
Q psy7557 353 YGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRK-DW 431 (936)
Q Consensus 353 h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~-~~ 431 (936)
||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|+.|.+++|+++. +.
T Consensus 85 hg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~ 164 (191)
T 2p6n_A 85 HGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDE 164 (191)
T ss_dssp CTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCH
T ss_pred eCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986 77
Q ss_pred hhHHhHHHHHhhcCCccchhh
Q psy7557 432 SHAHEIIPILEEGGHESYMIW 452 (936)
Q Consensus 432 ~~~~~l~~~l~~~~~~~~~~~ 452 (936)
..+..+.+.++..++.+|...
T Consensus 165 ~~~~~l~~~l~~~~~~~p~~l 185 (191)
T 2p6n_A 165 SVLMDLKALLLEAKQKVPPVL 185 (191)
T ss_dssp HHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHHHccCcCCHHH
Confidence 888999999999999888654
No 144
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.3e-26 Score=282.67 Aligned_cols=319 Identities=14% Similarity=0.195 Sum_probs=224.5
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhc
Q psy7557 98 TPSPIQAQAWPILM----SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 173 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~----~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 173 (936)
+|+|+|.+++..+. .+++.|++.+||+|||+.++..+....... .....+||||| ..|+.|+.+++.++
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~------~~~~~~LIV~P-~sll~qW~~E~~~~ 308 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR------RQNGPHIIVVP-LSTMPAWLDTFEKW 308 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH------SCCSCEEEECC-TTTHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc------CCCCCEEEEEC-chHHHHHHHHHHHH
Confidence 79999999998665 788999999999999998765443322211 23446899999 68889999999997
Q ss_pred cCCCCEEEEEeCCccchHHHHHh------------hcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCH
Q psy7557 174 DYKGLKAVCVYGGKEIEPQLEKI------------REGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFE 241 (936)
Q Consensus 174 ~~~~~~~~~~~gg~~~~~~~~~~------------~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~ 241 (936)
. .++++...+|+.......... ....+|+|+|++.+...... +.....++||+||||++-..+
T Consensus 309 ~-p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~~-- 383 (800)
T 3mwy_W 309 A-PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNAE-- 383 (800)
T ss_dssp S-TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCSS--
T ss_pred C-CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCch--
Confidence 5 356777777765544333221 12478999999998653321 222357899999999985433
Q ss_pred HHHHHHHhhcCCCCcEEEEEeccc----hHHHHHHHHhcCC-----------------------------CEEEEeCCCC
Q psy7557 242 PQINKTSIYINPNRQTVMTSATWN----KDVQRVAKKYMVN-----------------------------PVKVNVGSLD 288 (936)
Q Consensus 242 ~~~~~i~~~~~~~~q~~~~SAT~~----~~~~~~~~~~~~~-----------------------------~~~i~~~~~~ 288 (936)
....+.+..++ ....+++|||+- .++..++..+... |..+.-....
T Consensus 384 s~~~~~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~d 462 (800)
T 3mwy_W 384 SSLYESLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKD 462 (800)
T ss_dssp SHHHHHHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGG
T ss_pred hHHHHHHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHh
Confidence 22333333343 345688999972 2222233222211 1111100000
Q ss_pred cc--cCCceEEEEEEeC---------------------------------------------------------------
Q psy7557 289 LA--ATHTVTQKIIILD--------------------------------------------------------------- 303 (936)
Q Consensus 289 ~~--~~~~~~~~~~~~~--------------------------------------------------------------- 303 (936)
.. .+. .....+.+.
T Consensus 463 v~~~LP~-k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~ 541 (800)
T 3mwy_W 463 VEKSLPS-KTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGK 541 (800)
T ss_dssp GTTTSCC-EEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----
T ss_pred hhhccCC-cEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhccccc
Confidence 00 011 111111110
Q ss_pred ------------chhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcC
Q psy7557 304 ------------EDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSG 371 (936)
Q Consensus 304 ------------~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g 371 (936)
...|...|.+++..+...+.++||||+....++.+...|...++.+..+||+++..+|..+++.|+++
T Consensus 542 ~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~ 621 (800)
T 3mwy_W 542 MTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSP 621 (800)
T ss_dssp CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSST
T ss_pred ccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCC
Confidence 13355667777777767788999999999999999999999999999999999999999999999986
Q ss_pred Cc---EEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCce--eEEEEecccC
Q psy7557 372 YA---RICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSG--ESITLMTRKD 430 (936)
Q Consensus 372 ~~---~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g--~~~~~~~~~~ 430 (936)
.. .+|++|.+++.|||++.+++||+||+|.|+..+.|++||+.|.|+.. ..+.|++.+.
T Consensus 622 ~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~T 685 (800)
T 3mwy_W 622 DSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDT 685 (800)
T ss_dssp TCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTS
T ss_pred CCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCC
Confidence 54 49999999999999999999999999999999999999999998764 4555666664
No 145
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.95 E-value=5.7e-26 Score=270.02 Aligned_cols=324 Identities=17% Similarity=0.145 Sum_probs=217.4
Q ss_pred CCcHHHHHHHHHHh---------cCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHH
Q psy7557 98 TPSPIQAQAWPILM---------SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIER 168 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~---------~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~ 168 (936)
.|+|+|.+++..+. .++..|+..+||+|||+.++..+........ .......++||++|+ +|+.|+.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~--~~~p~~~~~LiV~P~-sll~qW~~ 131 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSP--DCKPEIDKVIVVSPS-SLVRNWYN 131 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCT--TSSCSCSCEEEEECH-HHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCc--cccCCCCcEEEEecH-HHHHHHHH
Confidence 68999999998764 3567899999999999987665543332211 111123469999997 89999999
Q ss_pred HHHhccCCCCEEEEEeCCccchH--HHHHhh------cCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCC
Q psy7557 169 EVNKIDYKGLKAVCVYGGKEIEP--QLEKIR------EGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGF 240 (936)
Q Consensus 169 ~~~~~~~~~~~~~~~~gg~~~~~--~~~~~~------~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~ 240 (936)
++.++....+.+..++||..... ...... ...+|+|+|++.+.... ..+....+++||+||||++-...
T Consensus 132 E~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~ikn~~- 208 (644)
T 1z3i_X 132 EVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRLKNSD- 208 (644)
T ss_dssp HHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGCCTTC-
T ss_pred HHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceecCChh-
Confidence 99997544667777777654321 111111 13789999999886543 23334578899999999986543
Q ss_pred HHHHHHHHhhcCCCCcEEEEEeccchHH----H---------------HHHHHhc-------------------------
Q psy7557 241 EPQINKTSIYINPNRQTVMTSATWNKDV----Q---------------RVAKKYM------------------------- 276 (936)
Q Consensus 241 ~~~~~~i~~~~~~~~q~~~~SAT~~~~~----~---------------~~~~~~~------------------------- 276 (936)
......+..+. ....+++|||+-.+- . .+...|.
T Consensus 209 -~~~~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~ 286 (644)
T 1z3i_X 209 -NQTYLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQE 286 (644)
T ss_dssp -HHHHHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHH
T ss_pred -hHHHHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHH
Confidence 12222223333 356799999974220 0 0000000
Q ss_pred ----CCCEEEEeCCCCc--ccCCceEEEEEEeC-----------------------------------------------
Q psy7557 277 ----VNPVKVNVGSLDL--AATHTVTQKIIILD----------------------------------------------- 303 (936)
Q Consensus 277 ----~~~~~i~~~~~~~--~~~~~~~~~~~~~~----------------------------------------------- 303 (936)
..|..+.-..... ..+....+ ++.+.
T Consensus 287 L~~~l~~~~lRR~k~~v~~~LP~k~~~-~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l 365 (644)
T 1z3i_X 287 LISIVNRCLIRRTSDILSKYLPVKIEQ-VVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPAL 365 (644)
T ss_dssp HHHHHHHHEECCCGGGGGGTSCCEEEE-EEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHH
T ss_pred HHHHHHHHHHHhhHHhHhhhCCCceEE-EEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHH
Confidence 0000000000000 01111111 11111
Q ss_pred -------------------------------chhhHHHHHHHHHhcc-CCCCcEEEEeCchHHHHHHHHHhhhcCCceee
Q psy7557 304 -------------------------------EDEKKDWLMEFFDNMD-EERDKVMVFMGRKASVSAMSSDLACQYRKSCS 351 (936)
Q Consensus 304 -------------------------------~~~k~~~l~~~l~~~~-~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~ 351 (936)
...|...+..++.... ..+.++||||+....++.+...|...++.+..
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~ 445 (644)
T 1z3i_X 366 IYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVR 445 (644)
T ss_dssp HHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEE
Confidence 1123333333333321 24689999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHhhcCCc---EEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCce--eEEEEe
Q psy7557 352 LYGDLSQEDREIALEDITSGYA---RICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSG--ESITLM 426 (936)
Q Consensus 352 ~h~~~~~~~R~~~~~~f~~g~~---~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g--~~~~~~ 426 (936)
+||++++.+|..+++.|++|.. .+|++|+++++|+|++++++||+||+|+++..|.|++||++|.|+.. ..+.|+
T Consensus 446 l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv 525 (644)
T 1z3i_X 446 LDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLL 525 (644)
T ss_dssp ECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEE
T ss_pred EeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEE
Confidence 9999999999999999999876 48999999999999999999999999999999999999999999775 455566
Q ss_pred cccC
Q psy7557 427 TRKD 430 (936)
Q Consensus 427 ~~~~ 430 (936)
+.+.
T Consensus 526 ~~~t 529 (644)
T 1z3i_X 526 STGT 529 (644)
T ss_dssp ETTS
T ss_pred ECCC
Confidence 6654
No 146
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.94 E-value=1.6e-26 Score=273.86 Aligned_cols=177 Identities=19% Similarity=0.142 Sum_probs=138.2
Q ss_pred CCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCch
Q psy7557 253 PNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRK 332 (936)
Q Consensus 253 ~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~ 332 (936)
...|+++||||+++..... ........+...... .. .+.+.....+...+...+......+.++||||+|+
T Consensus 385 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~--~p---~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 455 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH----TDEMVEQIIRPTGLL--DP---LIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTK 455 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH----CSSCEEECCCTTCCC--CC---EEEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred cCCCEEEEecCCChhHHHh----hhCeeeeeecccCCC--CC---eEEEecccchHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 4679999999998654322 112222222111111 11 12223334455566666655545678999999999
Q ss_pred HHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEecC-----CCCccccc
Q psy7557 333 ASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDF-----PSHIEEYV 407 (936)
Q Consensus 333 ~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~-----p~s~~~y~ 407 (936)
..++.+++.|...++++..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||++|. |.+..+|+
T Consensus 456 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~i 535 (661)
T 2d7d_A 456 KMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 535 (661)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 99999999
Q ss_pred cCCCCcccCCCceeEEEEecccChhhHHhHHH
Q psy7557 408 HRVGRTGRAGKSGESITLMTRKDWSHAHEIIP 439 (936)
Q Consensus 408 qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~ 439 (936)
||+|||||. ..|.+++|+++.+......+.+
T Consensus 536 Qr~GRagR~-~~G~~i~~~~~~~~~~~~~i~~ 566 (661)
T 2d7d_A 536 QTIGRAARN-AEGRVIMYADKITKSMEIAINE 566 (661)
T ss_dssp HHHHTTTTS-TTCEEEEECSSCCHHHHHHHHH
T ss_pred HHhCcccCC-CCCEEEEEEeCCCHHHHHHHHH
Confidence 999999999 7899999999887665554443
No 147
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.94 E-value=1.5e-26 Score=229.72 Aligned_cols=162 Identities=35% Similarity=0.592 Sum_probs=138.2
Q ss_pred ccCCceEEEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhh
Q psy7557 290 AATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDIT 369 (936)
Q Consensus 290 ~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~ 369 (936)
....++.|.+..++...|...|.+++... ....++||||+++..++.++..|...++.+..+||+|++.+|..+++.|+
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~ 93 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 93 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHH
Confidence 34567999999999999999999999875 35789999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHhhcCCccc
Q psy7557 370 SGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEGGHESY 449 (936)
Q Consensus 370 ~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 449 (936)
+|+.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|+.|.+++|+++.+...+..+.+.+...++++|
T Consensus 94 ~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 173 (185)
T 2jgn_A 94 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVP 173 (185)
T ss_dssp HTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCCC
T ss_pred cCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhh
Q psy7557 450 MIW 452 (936)
Q Consensus 450 ~~~ 452 (936)
...
T Consensus 174 ~~l 176 (185)
T 2jgn_A 174 SWL 176 (185)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 148
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.2e-25 Score=274.26 Aligned_cols=306 Identities=14% Similarity=0.177 Sum_probs=215.6
Q ss_pred CCcHHHHHHHHhhh----cCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc
Q psy7557 618 TPSPIQAQAWPILM----SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693 (936)
Q Consensus 618 ~p~~iQ~~ai~~~l----~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 693 (936)
.++|+|.+++..++ .+++.|+..+||+|||+.++..+....... .....+||||| .+|+.|+.+.+.++
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~------~~~~~~LIV~P-~sll~qW~~E~~~~ 308 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR------RQNGPHIIVVP-LSTMPAWLDTFEKW 308 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH------SCCSCEEEECC-TTTHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc------CCCCCEEEEEC-chHHHHHHHHHHHH
Confidence 79999999998665 788999999999999998765544332221 23456899999 67889999999998
Q ss_pred cCCCCEEEEEECCccchHHHHHH------------hcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCH
Q psy7557 694 DYKGLKAVCVYGGKELEPQLEKI------------REGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFE 761 (936)
Q Consensus 694 ~~~~~~~~~~~gg~~~~~~~~~l------------~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~ 761 (936)
. .++++...+|+.......... ...++|+|+|++.+...... +....+++||+||||++-...
T Consensus 309 ~-p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~~-- 383 (800)
T 3mwy_W 309 A-PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNAE-- 383 (800)
T ss_dssp S-TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCSS--
T ss_pred C-CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCch--
Confidence 5 467777777765444333221 12468999999998653321 122367899999999985432
Q ss_pred HHHHHHhhhcCCCceEEEEEecCC----hHHHHHHHHhcCC-----------------------------CeEEEeCCCC
Q psy7557 762 PQINKTSIYINPNRQTVMTSATWN----KDVQRVAKKYMVN-----------------------------PVKVNVGSLD 808 (936)
Q Consensus 762 ~~~~~i~~~~~~~~q~v~~SAT~~----~~~~~~~~~~~~~-----------------------------~~~i~~~~~~ 808 (936)
......+..+ .....+++|||+- .++..++..+... |..+......
T Consensus 384 s~~~~~l~~l-~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~d 462 (800)
T 3mwy_W 384 SSLYESLNSF-KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKD 462 (800)
T ss_dssp SHHHHHHTTS-EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGG
T ss_pred hHHHHHHHHh-hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHh
Confidence 2333333334 2345689999972 2222222222111 1111100000
Q ss_pred ccc-CCceEEEEEEc-----------------------------------------------------------------
Q psy7557 809 LAA-THTVTQKIIIL----------------------------------------------------------------- 822 (936)
Q Consensus 809 ~~~-~~~~~~~~~~~----------------------------------------------------------------- 822 (936)
... ........+.+
T Consensus 463 v~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~ 542 (800)
T 3mwy_W 463 VEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKM 542 (800)
T ss_dssp GTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----C
T ss_pred hhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccc
Confidence 000 00001111111
Q ss_pred ----------CcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCC
Q psy7557 823 ----------DEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGY 892 (936)
Q Consensus 823 ----------~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~ 892 (936)
....|...+..++..+...+.++||||+....++.+...|...++.+..+||+++..+|..+++.|+++.
T Consensus 543 ~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~ 622 (800)
T 3mwy_W 543 TRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPD 622 (800)
T ss_dssp CSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTT
T ss_pred cHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCC
Confidence 1234566677777777677889999999999999999999999999999999999999999999999865
Q ss_pred C---cEEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 893 A---RICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 893 ~---~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
. .+|++|.+++.|||++.+++||+||+|.|+..++||+||++|.
T Consensus 623 ~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~Ri 669 (800)
T 3mwy_W 623 SNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRI 669 (800)
T ss_dssp CSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCS
T ss_pred CCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhc
Confidence 5 4999999999999999999999999999999999999999994
No 149
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.94 E-value=6.9e-26 Score=220.55 Aligned_cols=150 Identities=32% Similarity=0.494 Sum_probs=141.3
Q ss_pred CCceEEEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcC
Q psy7557 292 THTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSG 371 (936)
Q Consensus 292 ~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g 371 (936)
..++.|.++.++...|...|.+++... ..+++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|
T Consensus 7 ~~~i~~~~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 84 (163)
T 2hjv_A 7 TRNIEHAVIQVREENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG 84 (163)
T ss_dssp CCCEEEEEEECCGGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred cccceEEEEECChHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 456899999999999999999998875 467999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHhh
Q psy7557 372 YARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEE 443 (936)
Q Consensus 372 ~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 443 (936)
+.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|+.|.+++|+++.+...+..+.+.+..
T Consensus 85 ~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 156 (163)
T 2hjv_A 85 EYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGF 156 (163)
T ss_dssp SCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTS
T ss_pred CCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999999999999998888888876643
No 150
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.94 E-value=5.2e-25 Score=261.75 Aligned_cols=311 Identities=16% Similarity=0.133 Sum_probs=209.0
Q ss_pred CCcHHHHHHHHhhh---------cCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHH
Q psy7557 618 TPSPIQAQAWPILM---------SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIER 688 (936)
Q Consensus 618 ~p~~iQ~~ai~~~l---------~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~ 688 (936)
.++|+|.+++..+. .++..|+..+||+|||+.++..+........ .......++|||||+ +|+.|+.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~--~~~p~~~~~LiV~P~-sll~qW~~ 131 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSP--DCKPEIDKVIVVSPS-SLVRNWYN 131 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCT--TSSCSCSCEEEEECH-HHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCc--cccCCCCcEEEEecH-HHHHHHHH
Confidence 68999999998874 3567899999999999987766554432211 111223569999996 89999999
Q ss_pred HHHhccCCCCEEEEEECCccchHH--HHHHhc------CceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCC
Q psy7557 689 EVNKIDYKGLKAVCVYGGKELEPQ--LEKIRE------GCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGF 760 (936)
Q Consensus 689 ~~~~~~~~~~~~~~~~gg~~~~~~--~~~l~~------~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~ 760 (936)
++.++....+.+..++||...... ...... ..+|+|+|++.+.... ..+....+++||+||||++-...
T Consensus 132 E~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~ikn~~- 208 (644)
T 1z3i_X 132 EVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRLKNSD- 208 (644)
T ss_dssp HHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGCCTTC-
T ss_pred HHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceecCChh-
Confidence 999986545667777776543221 111111 3689999999886543 23334578899999999985432
Q ss_pred HHHHHHHhhhcCCCceEEEEEecCChHH----H---------------HHHHHhc-------------------------
Q psy7557 761 EPQINKTSIYINPNRQTVMTSATWNKDV----Q---------------RVAKKYM------------------------- 796 (936)
Q Consensus 761 ~~~~~~i~~~~~~~~q~v~~SAT~~~~~----~---------------~~~~~~~------------------------- 796 (936)
.... .....++ ....+++|||+-.+- . .+...|.
T Consensus 209 ~~~~-~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~ 286 (644)
T 1z3i_X 209 NQTY-LALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQE 286 (644)
T ss_dssp HHHH-HHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHH
T ss_pred hHHH-HHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHH
Confidence 2222 2222333 346799999974321 0 0000000
Q ss_pred ----CCCeEEEeCCCCcc-cCCceEEEEEEcC------------------------------------------------
Q psy7557 797 ----VNPVKVNVGSLDLA-ATHTVTQKIIILD------------------------------------------------ 823 (936)
Q Consensus 797 ----~~~~~i~~~~~~~~-~~~~~~~~~~~~~------------------------------------------------ 823 (936)
..|..+.-...... ........+..+.
T Consensus 287 L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~ 366 (644)
T 1z3i_X 287 LISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALI 366 (644)
T ss_dssp HHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHH
T ss_pred HHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHH
Confidence 00000000000000 0000011111111
Q ss_pred ------------------------------cchhHHHHHHHHHhcc-CCCCcEEEEcCChHHHHHHHHHHHhcCCceEEE
Q psy7557 824 ------------------------------EDEKKDWLMEFFDNMD-EERDKVMVFMGRKASVSAMSSDLACQYRKSCSL 872 (936)
Q Consensus 824 ------------------------------~~~k~~~l~~~l~~~~-~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~ 872 (936)
...|...+..++.... ..+.++||||+.+..++.+...|...++.+..+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l 446 (644)
T 1z3i_X 367 YEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRL 446 (644)
T ss_dssp HHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEE
Confidence 1223334444444332 246799999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHhhcCCCc---EEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 873 YGDLSQEDREIALEDITSGYAR---ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 873 h~~l~~~~R~~~~~~F~~g~~~---vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
||++++.+|..+++.|++|... +|++|+++++|+|++++++||+||+|.++..|.|++||++|.
T Consensus 447 ~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~ 513 (644)
T 1z3i_X 447 DGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRD 513 (644)
T ss_dssp CSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSST
T ss_pred eCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhc
Confidence 9999999999999999998764 899999999999999999999999999999999999999994
No 151
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.94 E-value=9.7e-26 Score=220.11 Aligned_cols=154 Identities=29% Similarity=0.567 Sum_probs=136.8
Q ss_pred ceEEEEEEeCchh-hHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCC
Q psy7557 294 TVTQKIIILDEDE-KKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGY 372 (936)
Q Consensus 294 ~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~ 372 (936)
.+.|.+..++..+ |...|.+++... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 80 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS 80 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 5778888888777 999999998875 5689999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHhhcCCccc
Q psy7557 373 ARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEGGHESY 449 (936)
Q Consensus 373 ~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 449 (936)
.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|+.|.+++|+++.+...+..+.+.+....+++|
T Consensus 81 ~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (165)
T 1fuk_A 81 SRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELP 157 (165)
T ss_dssp CSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECC
T ss_pred CEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999888888887766554444
No 152
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.93 E-value=2.5e-25 Score=263.79 Aligned_cols=155 Identities=17% Similarity=0.130 Sum_probs=119.4
Q ss_pred CCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCCh
Q psy7557 773 PNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRK 852 (936)
Q Consensus 773 ~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~ 852 (936)
...|++++|||++...... ........+.+... .. ..+.+.....+...+...+......+.++||||+|+
T Consensus 379 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l--~~---p~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 449 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAH----SGRVVEQIIRPTGL--LD---PLVRVKPTENQILDLMEGIRERAARGERTLVTVLTV 449 (664)
T ss_dssp TCSEEEEEESSCCHHHHHH----CSEEEEECSCTTCC--CC---CEEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred hcCCEEEEecCCCHHHHHh----hhCeeeeeeccCCC--CC---CeEEEecccchHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 4679999999997643221 11111111111111 11 112233334455555555555444567999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEEccC-----CCChhhhH
Q psy7557 853 ASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDF-----PSHIEEYV 927 (936)
Q Consensus 853 ~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~-----p~s~~~yi 927 (936)
..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|++++||++|. |.|..+|+
T Consensus 450 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~i 529 (664)
T 1c4o_A 450 RMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 529 (664)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHH
T ss_pred HHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 89999999
Q ss_pred hhhhhccCC
Q psy7557 928 HRVGRTGEF 936 (936)
Q Consensus 928 qr~GRaGR~ 936 (936)
||+|||||.
T Consensus 530 Qr~GRagR~ 538 (664)
T 1c4o_A 530 QTIGRAARN 538 (664)
T ss_dssp HHHGGGTTS
T ss_pred HHHCccCcC
Confidence 999999995
No 153
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=3.4e-24 Score=247.16 Aligned_cols=129 Identities=20% Similarity=0.260 Sum_probs=111.6
Q ss_pred CCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc
Q psy7557 614 LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693 (936)
Q Consensus 614 ~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 693 (936)
+|+ .|+|+|..++|.+++|+ ++.++||+|||++|.+|++...+ .|..|+|++||++||.|.++.+..+
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL---------~G~qv~VvTPTreLA~Qdae~m~~l 143 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL---------TGKGVHVVTVNDYLARRDAEWMGPV 143 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT---------TCSCCEEEESSHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH---------hCCCEEEEeCCHHHHHHHHHHHHHH
Confidence 799 99999999999999998 99999999999999999975543 2557999999999999999999987
Q ss_pred -cCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHH-HHHHHcCC------CCCC---CceEEEEcccchhc
Q psy7557 694 -DYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRL-NDFVSRAS------IDLK---AVSFVVLDEADRML 756 (936)
Q Consensus 694 -~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l-~~~l~~~~------~~~~---~i~~lViDEah~l~ 756 (936)
...++++.+++||.+. +......++||+||||+++ .+++..+. ..++ .+.++|+||+|.|+
T Consensus 144 ~~~lGLsv~~i~Gg~~~--~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 144 YRGLGLSVGVIQHASTP--AERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HHTTTCCEEECCTTCCH--HHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HHhcCCeEEEEeCCCCH--HHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 4679999999999874 3344556799999999999 78887652 4577 89999999999987
No 154
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.93 E-value=1.3e-25 Score=221.48 Aligned_cols=151 Identities=23% Similarity=0.469 Sum_probs=136.0
Q ss_pred CCceEEEEEEeCchh-hHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhc
Q psy7557 292 THTVTQKIIILDEDE-KKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITS 370 (936)
Q Consensus 292 ~~~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~ 370 (936)
...+.|.++.++... |...|.+++... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD 82 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 457899999888765 999999988775 46799999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEecccccCCCCCCCcEEEEecCC------CCccccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHhhc
Q psy7557 371 GYARICVATDVASRGLDVPDLTHVINYDFP------SHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEG 444 (936)
Q Consensus 371 g~~~vLvaT~~~~~GiDip~v~~VI~~d~p------~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 444 (936)
|+.+|||||+++++|+|+|++++||+||+| .+..+|+||+|||||.|+.|.+++|+++.+...+..+.+.+...
T Consensus 83 g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 162 (175)
T 2rb4_A 83 GKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSS 162 (175)
T ss_dssp TSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCC
T ss_pred CCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999 99999999999999999999999999999988888887776644
No 155
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.93 E-value=8.5e-26 Score=221.64 Aligned_cols=154 Identities=27% Similarity=0.424 Sum_probs=138.9
Q ss_pred CCceEEEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcC
Q psy7557 292 THTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSG 371 (936)
Q Consensus 292 ~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g 371 (936)
...+.|.+..++..+|...|.+++... ..+++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 80 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF 80 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCC
Confidence 356889999999999999999999875 467999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEeccc-ChhhHHhHHHHHhhcCCc
Q psy7557 372 YARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRK-DWSHAHEIIPILEEGGHE 447 (936)
Q Consensus 372 ~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~~ 447 (936)
+.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|+.|.+++|+++. +...+..+.+.+...-.+
T Consensus 81 ~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 157 (172)
T 1t5i_A 81 QRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISE 157 (172)
T ss_dssp SCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEE
T ss_pred CCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhh
Confidence 9999999999999999999999999999999999999999999999999999999876 456666676666544333
No 156
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.92 E-value=7.2e-25 Score=222.80 Aligned_cols=148 Identities=31% Similarity=0.486 Sum_probs=135.2
Q ss_pred eEEEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcE
Q psy7557 295 VTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYAR 374 (936)
Q Consensus 295 ~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~ 374 (936)
+.+..+.+....|...|.+++... ..+++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|+.+
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~ 83 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR 83 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHH--CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCC
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCe
Confidence 455666778889999999998865 468999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHhhc
Q psy7557 375 ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEG 444 (936)
Q Consensus 375 vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 444 (936)
|||||+++++|+|+|++++||+||+|.+..+|+||+|||||.|+.|.|++|+++.+...+..+.+.+...
T Consensus 84 vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~ 153 (212)
T 3eaq_A 84 VLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRR 153 (212)
T ss_dssp EEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSC
T ss_pred EEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999999999999988888887776543
No 157
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.92 E-value=4e-24 Score=253.39 Aligned_cols=155 Identities=18% Similarity=0.136 Sum_probs=120.4
Q ss_pred CCceEEEEEecCChHHHHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCCh
Q psy7557 773 PNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRK 852 (936)
Q Consensus 773 ~~~q~v~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~ 852 (936)
...|++++|||++...... ........+.+.... .. .+.+.....+...+...+......+.++||||+|+
T Consensus 385 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~--~p---~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 455 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH----TDEMVEQIIRPTGLL--DP---LIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTK 455 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH----CSSCEEECCCTTCCC--CC---EEEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred cCCCEEEEecCCChhHHHh----hhCeeeeeecccCCC--CC---eEEEecccchHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 4679999999997654222 112222222111111 11 12223334455555555555545567999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEEccC-----CCChhhhH
Q psy7557 853 ASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDF-----PSHIEEYV 927 (936)
Q Consensus 853 ~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~-----p~s~~~yi 927 (936)
..++.++..|...++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||++|. |.+..+|+
T Consensus 456 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~i 535 (661)
T 2d7d_A 456 KMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 535 (661)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 99999999
Q ss_pred hhhhhccCC
Q psy7557 928 HRVGRTGEF 936 (936)
Q Consensus 928 qr~GRaGR~ 936 (936)
||+|||||.
T Consensus 536 Qr~GRagR~ 544 (661)
T 2d7d_A 536 QTIGRAARN 544 (661)
T ss_dssp HHHHTTTTS
T ss_pred HHhCcccCC
Confidence 999999995
No 158
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.91 E-value=3.6e-24 Score=227.57 Aligned_cols=149 Identities=30% Similarity=0.482 Sum_probs=134.5
Q ss_pred ceEEEEEEeCchhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCc
Q psy7557 294 TVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYA 373 (936)
Q Consensus 294 ~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~ 373 (936)
.+.+.++.+....|...|.+++... ..+++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|+.
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~--~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~ 79 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEV 79 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSC
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCc
Confidence 3577888889999999999999876 37899999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHhhc
Q psy7557 374 RICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEG 444 (936)
Q Consensus 374 ~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 444 (936)
+|||||+++++|+|+|++++||+||+|.+..+|+||+|||||.|+.|.|++|+++.+...+..+.+.+...
T Consensus 80 ~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~ 150 (300)
T 3i32_A 80 RVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRR 150 (300)
T ss_dssp CEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCC
T ss_pred eEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999999999999999999999999999988888887776543
No 159
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.82 E-value=3.9e-25 Score=216.85 Aligned_cols=147 Identities=32% Similarity=0.565 Sum_probs=134.0
Q ss_pred ceEEEEEEeCc-hhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCC
Q psy7557 294 TVTQKIIILDE-DEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGY 372 (936)
Q Consensus 294 ~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~ 372 (936)
.+.|.+..++. ..|...|.+++... ..+++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|+
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~--~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~ 80 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQP--EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 80 (170)
Confidence 35667777777 78888888888763 4679999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEecccccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHh
Q psy7557 373 ARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILE 442 (936)
Q Consensus 373 ~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~ 442 (936)
.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|+.|.+++++++.+...+..+.+.+.
T Consensus 81 ~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~ 150 (170)
T 2yjt_D 81 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIE 150 (170)
Confidence 9999999999999999999999999999999999999999999999999999999998887777776554
No 160
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.89 E-value=1e-22 Score=202.83 Aligned_cols=140 Identities=36% Similarity=0.554 Sum_probs=114.6
Q ss_pred HHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEE
Q psy7557 793 KKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSL 872 (936)
Q Consensus 793 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~ 872 (936)
..++.+|..+.++... .....+.+.+..++...|...|.+++... .+++||||+++..++.++..|...++.+..+
T Consensus 9 ~~~~~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~K~~~L~~~l~~~---~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~l 84 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMG-AASLDVIQEVEYVKEEAKMVYLLECLQKT---PPPVLIFAEKKADVDAIHEYLLLKGVEAVAI 84 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTTS---CSCEEEECSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred ccccCCCEEEEECCCC-CCCcCceEEEEEcChHHHHHHHHHHHHhC---CCCEEEEECCHHHHHHHHHHHHHcCCcEEEE
Confidence 4577889888887655 34567889999999999999999988764 4589999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 873 YGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 873 h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.+..+|+||+|||||+
T Consensus 85 hg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~ 148 (191)
T 2p6n_A 85 HGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCS 148 (191)
T ss_dssp CTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC-
T ss_pred eCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999995
No 161
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.88 E-value=3.5e-23 Score=212.35 Aligned_cols=167 Identities=19% Similarity=0.218 Sum_probs=124.6
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHH-HHHHHHh
Q psy7557 94 LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQ-IEREVNK 172 (936)
Q Consensus 94 ~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q-~~~~~~~ 172 (936)
.+...|+|+|.++++.+++++++++++|||+|||++|+++++..+..... ...++++||++|+++|+.| +.+.+++
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~~~~lil~p~~~L~~q~~~~~~~~ 105 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK---ASEPGKVIVLVNKVLLVEQLFRKEFQP 105 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH---TTCCCCEEEEESSHHHHHHHHHHTHHH
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc---ccCCCcEEEEECHHHHHHHHHHHHHHH
Confidence 44558999999999999999999999999999999999998866533110 1236789999999999999 7888888
Q ss_pred ccCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCC------cCCCCceEEEEccchhhhcCCCHHHHHH
Q psy7557 173 IDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRAS------IDLKAVSFVVLDEADRMLDLGFEPQINK 246 (936)
Q Consensus 173 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~------~~~~~~~~lViDEah~l~~~~~~~~~~~ 246 (936)
+...++++..++|+.........+..+++|+|+||+++.+.+.... ..+.++++||+||||++.+.++...+..
T Consensus 106 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~ 185 (216)
T 3b6e_A 106 FLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMR 185 (216)
T ss_dssp HHTTTSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHH
T ss_pred HhccCceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHH
Confidence 8766888999988877666655665679999999999998887643 5678999999999999988776655533
Q ss_pred -HHhhc-------------CCCCcEEEEEec
Q psy7557 247 -TSIYI-------------NPNRQTVMTSAT 263 (936)
Q Consensus 247 -i~~~~-------------~~~~q~~~~SAT 263 (936)
+.... .+..+++++|||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 186 HYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHhcccccccccccCCCCcceEEEeecC
Confidence 22111 167899999998
No 162
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.88 E-value=5.4e-22 Score=192.96 Aligned_cols=123 Identities=33% Similarity=0.518 Sum_probs=116.7
Q ss_pred CCceEEEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcC
Q psy7557 812 THTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSG 891 (936)
Q Consensus 812 ~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g 891 (936)
...+.+.+..++...|...|.+++... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|
T Consensus 7 ~~~i~~~~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 84 (163)
T 2hjv_A 7 TRNIEHAVIQVREENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG 84 (163)
T ss_dssp CCCEEEEEEECCGGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred cccceEEEEECChHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 445889999999999999999999875 457899999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 892 YARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 892 ~~~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
+.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.
T Consensus 85 ~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~ 129 (163)
T 2hjv_A 85 EYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRA 129 (163)
T ss_dssp SCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCT
T ss_pred CCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcC
Confidence 999999999999999999999999999999999999999999995
No 163
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.88 E-value=5.3e-23 Score=211.07 Aligned_cols=167 Identities=19% Similarity=0.220 Sum_probs=124.5
Q ss_pred CCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHH-HHHHHHh
Q psy7557 614 LSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQ-IEREVNK 692 (936)
Q Consensus 614 ~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q-~~~~~~~ 692 (936)
.+...|+|+|.++++.+++++++++.+|||+|||++|+++++..+..... ...++++||++|+++|+.| +.+.+..
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~~~~lil~p~~~L~~q~~~~~~~~ 105 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK---ASEPGKVIVLVNKVLLVEQLFRKEFQP 105 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH---TTCCCCEEEEESSHHHHHHHHHHTHHH
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc---ccCCCcEEEEECHHHHHHHHHHHHHHH
Confidence 34458999999999999999999999999999999999998866543210 1246789999999999999 7888888
Q ss_pred ccCCCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCC------CCCCCceEEEEcccchhccCCCHHHHHH
Q psy7557 693 IDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRAS------IDLKAVSFVVLDEADRMLDLGFEPQINK 766 (936)
Q Consensus 693 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~------~~~~~i~~lViDEah~l~~~~~~~~~~~ 766 (936)
+...++++..++|+.........+..+++|+|+||+++...+.... ..+.++++||+||||++.+.++...+..
T Consensus 106 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~ 185 (216)
T 3b6e_A 106 FLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMR 185 (216)
T ss_dssp HHTTTSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHH
T ss_pred HhccCceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHH
Confidence 8766888888988877666555555678999999999999887653 5578899999999999988766655432
Q ss_pred -Hhhhc-------------CCCceEEEEEec
Q psy7557 767 -TSIYI-------------NPNRQTVMTSAT 783 (936)
Q Consensus 767 -i~~~~-------------~~~~q~v~~SAT 783 (936)
+.... .+..+++++|||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 186 HYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHhcccccccccccCCCCcceEEEeecC
Confidence 21111 167899999998
No 164
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.88 E-value=3.7e-22 Score=195.63 Aligned_cols=122 Identities=29% Similarity=0.478 Sum_probs=115.7
Q ss_pred CceEEEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCC
Q psy7557 813 HTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGY 892 (936)
Q Consensus 813 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~ 892 (936)
..+.|.+..++...|...|.+++... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 81 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 81 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 45788899999999999999999876 4578999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 893 ARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 893 ~~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||+
T Consensus 82 ~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~ 125 (172)
T 1t5i_A 82 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRF 125 (172)
T ss_dssp CSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGG
T ss_pred CcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccC
Confidence 99999999999999999999999999999999999999999994
No 165
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.87 E-value=1e-21 Score=193.62 Aligned_cols=123 Identities=24% Similarity=0.525 Sum_probs=112.4
Q ss_pred CCceEEEEEEcCcch-hHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhc
Q psy7557 812 THTVTQKIIILDEDE-KKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITS 890 (936)
Q Consensus 812 ~~~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~ 890 (936)
...+.|.+..++... |...|..++... ..+++||||+++..++.++..|...+..+..+||+|++.+|..+++.|++
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD 82 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 456888888888765 999999988875 45799999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEecccCccCCCCCCCCEEEEccCC------CChhhhHhhhhhccCC
Q psy7557 891 GYARICVATDVASRGLDVPDLTHVINYDFP------SHIEEYVHRVGRTGEF 936 (936)
Q Consensus 891 g~~~vLVaT~~~~~Gidip~v~~VI~~d~p------~s~~~yiqr~GRaGR~ 936 (936)
|+.+|||||+++++|+|+|++++||+||+| .+..+|+||+|||||+
T Consensus 83 g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~ 134 (175)
T 2rb4_A 83 GKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRF 134 (175)
T ss_dssp TSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC---
T ss_pred CCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccC
Confidence 999999999999999999999999999999 9999999999999994
No 166
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.86 E-value=1.6e-21 Score=190.17 Aligned_cols=121 Identities=31% Similarity=0.662 Sum_probs=111.5
Q ss_pred ceEEEEEEcCcch-hHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCC
Q psy7557 814 TVTQKIIILDEDE-KKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGY 892 (936)
Q Consensus 814 ~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~ 892 (936)
.+.|.+..++... |...|.+++... ..+++||||+++..++.++..|...+..+..+||+|++.+|..+++.|++|+
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 80 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS 80 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 4677777777766 999999998875 4578999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 893 ARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 893 ~~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.
T Consensus 81 ~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~ 124 (165)
T 1fuk_A 81 SRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRF 124 (165)
T ss_dssp CSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC--
T ss_pred CEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccC
Confidence 99999999999999999999999999999999999999999995
No 167
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.86 E-value=1.1e-21 Score=194.39 Aligned_cols=126 Identities=40% Similarity=0.667 Sum_probs=104.1
Q ss_pred ccCCceEEEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhh
Q psy7557 810 AATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDIT 889 (936)
Q Consensus 810 ~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~ 889 (936)
.....+.|.+..++...|...|.+++... ...+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|+
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~ 93 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 93 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHH
Confidence 34567899999999999999999999876 35678999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 890 SGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 890 ~g~~~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
+|+.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.
T Consensus 94 ~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~ 140 (185)
T 2jgn_A 94 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRV 140 (185)
T ss_dssp HTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCT
T ss_pred cCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCC
Confidence 99999999999999999999999999999999999999999999995
No 168
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=202.80 Aligned_cols=182 Identities=18% Similarity=0.175 Sum_probs=133.1
Q ss_pred CHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHH
Q psy7557 84 YPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELA 163 (936)
Q Consensus 84 ~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La 163 (936)
.+.+.+.+...+...++++|.++++.+.+|++++++||||||||.++.++++....... ...+.++++++|+++|+
T Consensus 47 ~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~----~~~~~~~l~~~p~~~la 122 (235)
T 3llm_A 47 DHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQND----RAAECNIVVTQPRRISA 122 (235)
T ss_dssp CHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT----CGGGCEEEEEESSHHHH
T ss_pred CHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC----CCCceEEEEeccchHHH
Confidence 34444444444444679999999999999999999999999999999888887665421 12356899999999999
Q ss_pred HHHHHHHHhcc--CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhh-hcCCC
Q psy7557 164 TQIEREVNKID--YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRM-LDLGF 240 (936)
Q Consensus 164 ~Q~~~~~~~~~--~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l-~~~~~ 240 (936)
.|+.+.+.... ..+..+......... ....+++|+|+|||++.+++.. .++++++||+||||++ ++.+|
T Consensus 123 ~q~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~ 194 (235)
T 3llm_A 123 VSVAERVAFERGEEPGKSCGYSVRFESI-----LPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDF 194 (235)
T ss_dssp HHHHHHHHHTTTCCTTSSEEEEETTEEE-----CCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHH
T ss_pred HHHHHHHHHHhccccCceEEEeechhhc-----cCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHH
Confidence 99999987742 223333332221111 0113488999999999999876 4889999999999986 77777
Q ss_pred H-HHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCE
Q psy7557 241 E-PQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPV 280 (936)
Q Consensus 241 ~-~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~ 280 (936)
. ..++.+.... ++.|+++||||++... +.+.+...|+
T Consensus 195 ~~~~l~~i~~~~-~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 195 LLVVLRDVVQAY-PEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp HHHHHHHHHHHC-TTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred HHHHHHHHHhhC-CCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 7 3555555544 5799999999999776 6666655554
No 169
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.85 E-value=3.7e-21 Score=199.47 Aligned_cols=181 Identities=17% Similarity=0.175 Sum_probs=131.6
Q ss_pred HHHHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHH
Q psy7557 605 PEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELAT 684 (936)
Q Consensus 605 ~~~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~ 684 (936)
+.+.+.+...+...++++|.++++.+..|++++++||||||||+++.++++....... ...+.++++++|+++|+.
T Consensus 48 ~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~----~~~~~~~l~~~p~~~la~ 123 (235)
T 3llm_A 48 HDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQND----RAAECNIVVTQPRRISAV 123 (235)
T ss_dssp HHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT----CGGGCEEEEEESSHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC----CCCceEEEEeccchHHHH
Confidence 3333434443444679999999999999999999999999999999888887654321 123568999999999999
Q ss_pred HHHHHHHhccC--CCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchh-ccCCCH
Q psy7557 685 QIEREVNKIDY--KGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRM-LDLGFE 761 (936)
Q Consensus 685 Q~~~~~~~~~~--~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l-~~~~~~ 761 (936)
|+.+.+..... .+..+.......... ...+++|+|+||+++.+++.. .++++++|||||||++ ++.+|.
T Consensus 124 q~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~ 195 (235)
T 3llm_A 124 SVAERVAFERGEEPGKSCGYSVRFESIL-----PRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFL 195 (235)
T ss_dssp HHHHHHHHTTTCCTTSSEEEEETTEEEC-----CCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHH
T ss_pred HHHHHHHHHhccccCceEEEeechhhcc-----CCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHH
Confidence 99998876532 233333222211110 113478999999999999876 4889999999999986 666666
Q ss_pred -HHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhcCCCe
Q psy7557 762 -PQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPV 800 (936)
Q Consensus 762 -~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~ 800 (936)
..+..+.... ++.|+++||||++.+. +.+.+..+|+
T Consensus 196 ~~~l~~i~~~~-~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 196 LVVLRDVVQAY-PEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp HHHHHHHHHHC-TTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred HHHHHHHHhhC-CCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 3455555444 6899999999998765 6666666654
No 170
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.85 E-value=4.6e-21 Score=194.67 Aligned_cols=120 Identities=34% Similarity=0.512 Sum_probs=112.2
Q ss_pred eEEEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCc
Q psy7557 815 VTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYAR 894 (936)
Q Consensus 815 ~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~ 894 (936)
+.+....+....|...+..++... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~ 83 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR 83 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHH--CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCC
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCe
Confidence 344556778889999999999875 467999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 895 ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 895 vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
|||||+++++|+|+|++++||+||+|.+..+|+||+|||||.
T Consensus 84 vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~ 125 (212)
T 3eaq_A 84 VLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRA 125 (212)
T ss_dssp EEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCC
T ss_pred EEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCC
Confidence 999999999999999999999999999999999999999995
No 171
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.85 E-value=9.8e-21 Score=220.21 Aligned_cols=127 Identities=21% Similarity=0.198 Sum_probs=88.2
Q ss_pred CCCCCCcHHHHHHHHH----HhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHH
Q psy7557 94 LSFTTPSPIQAQAWPI----LMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIERE 169 (936)
Q Consensus 94 ~g~~~~~~~Q~~ai~~----~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~ 169 (936)
.|| +|+|+|.+++.. +..|+++++.||||+|||++|++|++.. +++++|++||++|+.|+.+.
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~------------~~~~~~~~~t~~l~~q~~~~ 70 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL------------KKKVLIFTRTHSQLDSIYKN 70 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH------------TCEEEEEESCHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC------------CCcEEEEcCCHHHHHHHHHH
Confidence 477 899999998764 4578999999999999999999998742 46899999999999999999
Q ss_pred HHhccCCCCEEEEEeCCcc--------c------------------------hHHH---------------HHhhcCCcE
Q psy7557 170 VNKIDYKGLKAVCVYGGKE--------I------------------------EPQL---------------EKIREGCHI 202 (936)
Q Consensus 170 ~~~~~~~~~~~~~~~gg~~--------~------------------------~~~~---------------~~~~~~~~I 202 (936)
+.++ ++++..+.|... . .+.+ .....+++|
T Consensus 71 ~~~l---~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adi 147 (540)
T 2vl7_A 71 AKLL---GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDV 147 (540)
T ss_dssp HGGG---TCCEEEC---------------------------------------------------------CTTGGGCSE
T ss_pred HHhc---CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCE
Confidence 8875 334443332110 0 0001 111245799
Q ss_pred EEeCCchhHHHHHcCCc-------CCCCceEEEEccchhhh
Q psy7557 203 LIATPGRLNDFVSRASI-------DLKAVSFVVLDEADRML 236 (936)
Q Consensus 203 iv~Tp~~l~~~l~~~~~-------~~~~~~~lViDEah~l~ 236 (936)
||+|+..+.+....+.+ .+....++||||||++.
T Consensus 148 VV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 148 IAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp EEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred EEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 99999999875543322 24678999999999984
No 172
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.84 E-value=1.6e-20 Score=199.61 Aligned_cols=120 Identities=33% Similarity=0.505 Sum_probs=112.9
Q ss_pred eEEEEEEcCcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCc
Q psy7557 815 VTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYAR 894 (936)
Q Consensus 815 ~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~ 894 (936)
+.+.++.+....|...+..++.... .+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~--~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~ 80 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVAS--PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR 80 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHC--CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcC--CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce
Confidence 5677888899999999999998763 68999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 895 ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 895 vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
|||||+++++|+|+|++++||+||+|.+..+|+||+|||||.
T Consensus 81 vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~ 122 (300)
T 3i32_A 81 VLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRA 122 (300)
T ss_dssp EEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC--
T ss_pred EEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcC
Confidence 999999999999999999999999999999999999999995
No 173
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.83 E-value=1.7e-20 Score=218.09 Aligned_cols=127 Identities=22% Similarity=0.206 Sum_probs=86.7
Q ss_pred CCCCCCcHHHHHHHHh----hhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHH
Q psy7557 614 LSFTTPSPIQAQAWPI----LMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIERE 689 (936)
Q Consensus 614 ~g~~~p~~iQ~~ai~~----~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~ 689 (936)
.|| .|+|+|.+++.. +..|+++++.||||+|||++|++|++.. +++++|++||++|+.|+.+.
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~------------~~~~~~~~~t~~l~~q~~~~ 70 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL------------KKKVLIFTRTHSQLDSIYKN 70 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH------------TCEEEEEESCHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC------------CCcEEEEcCCHHHHHHHHHH
Confidence 478 899999998654 4578999999999999999999998742 57899999999999999998
Q ss_pred HHhccCCCCEEEEEECCcc--------ch------------------------HHH---------------HHHhcCceE
Q psy7557 690 VNKIDYKGLKAVCVYGGKE--------LE------------------------PQL---------------EKIREGCHI 722 (936)
Q Consensus 690 ~~~~~~~~~~~~~~~gg~~--------~~------------------------~~~---------------~~l~~~~~I 722 (936)
+..+ ++++..+.|... .. ..+ .....+++|
T Consensus 71 ~~~l---~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adi 147 (540)
T 2vl7_A 71 AKLL---GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDV 147 (540)
T ss_dssp HGGG---TCCEEEC---------------------------------------------------------CTTGGGCSE
T ss_pred HHhc---CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCE
Confidence 8875 233333332110 00 000 111235799
Q ss_pred EEeCchHHHHHHHcCCC-------CCCCceEEEEcccchhc
Q psy7557 723 LIATPGRLNDFVSRASI-------DLKAVSFVVLDEADRML 756 (936)
Q Consensus 723 iV~Tp~~l~~~l~~~~~-------~~~~i~~lViDEah~l~ 756 (936)
||+|+..+.+-.....+ .+....++||||||++.
T Consensus 148 VV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 148 IAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp EEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred EEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 99999998764432221 24567899999999984
No 174
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.82 E-value=2.4e-20 Score=199.22 Aligned_cols=153 Identities=15% Similarity=0.076 Sum_probs=123.9
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhccC-C
Q psy7557 98 TPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDY-K 176 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~-~ 176 (936)
+|+|+|.++++.++++++.++++|||+|||++++.++...+.. .+.++||++||++|+.|+.++++++.. .
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~--------~~~~~lil~Pt~~L~~q~~~~l~~~~~~~ 184 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN--------YEGKILIIVPTTALTTQMADDFVDYRLFS 184 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH--------CSSEEEEECSSHHHHHHHHHHHHHHTSCC
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc--------CCCeEEEEECCHHHHHHHHHHHHHhcccc
Confidence 8999999999999988889999999999999998877665431 234899999999999999999999753 4
Q ss_pred CCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHHHhhcCCCCc
Q psy7557 177 GLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQ 256 (936)
Q Consensus 177 ~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q 256 (936)
+..+..++||..... ....+.+|+|+||+++... ....+.+++++|+||||++.. +.+..++..+.+..+
T Consensus 185 ~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~ 254 (282)
T 1rif_A 185 HAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMF 254 (282)
T ss_dssp GGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCE
T ss_pred cceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCe
Confidence 567788888876543 2224589999999876432 233467899999999999863 577788888878899
Q ss_pred EEEEEeccchHH
Q psy7557 257 TVMTSATWNKDV 268 (936)
Q Consensus 257 ~~~~SAT~~~~~ 268 (936)
++++|||++...
T Consensus 255 ~l~lSATp~~~~ 266 (282)
T 1rif_A 255 KFGLSGSLRDGK 266 (282)
T ss_dssp EEEECSSCCTTS
T ss_pred EEEEeCCCCCcc
Confidence 999999998654
No 175
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.81 E-value=2e-18 Score=201.72 Aligned_cols=285 Identities=15% Similarity=0.081 Sum_probs=182.8
Q ss_pred CCCCCcHHHHHHHHHH----hcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q psy7557 95 SFTTPSPIQAQAWPIL----MSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREV 170 (936)
Q Consensus 95 g~~~~~~~Q~~ai~~~----~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~ 170 (936)
|| +|+|.|.+++..+ ..|+|+++.||||+|||++|++|++. .+++++|++||++|+.|+.+.+
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~------------~~~~v~i~~pt~~l~~q~~~~~ 67 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE------------VKPKVLFVVRTHNEFYPIYRDL 67 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH------------HCSEEEEEESSGGGHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh------------CCCeEEEEcCCHHHHHHHHHHH
Confidence 45 7999999987754 47899999999999999999999985 2578999999999999999999
Q ss_pred Hhcc-CCCCEEEEEeCCccc---------------------------------hHHH------------------HHhhc
Q psy7557 171 NKID-YKGLKAVCVYGGKEI---------------------------------EPQL------------------EKIRE 198 (936)
Q Consensus 171 ~~~~-~~~~~~~~~~gg~~~---------------------------------~~~~------------------~~~~~ 198 (936)
..+. ..++++..+.|+... .... .....
T Consensus 68 ~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~ 147 (551)
T 3crv_A 68 TKIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLY 147 (551)
T ss_dssp TTCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGG
T ss_pred HHHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhh
Confidence 9874 347888887764321 1111 22234
Q ss_pred CCcEEEeCCchhHHHHHcCCcCC-CCceEEEEccchhhhcCC--------------------------------------
Q psy7557 199 GCHILIATPGRLNDFVSRASIDL-KAVSFVVLDEADRMLDLG-------------------------------------- 239 (936)
Q Consensus 199 ~~~Iiv~Tp~~l~~~l~~~~~~~-~~~~~lViDEah~l~~~~-------------------------------------- 239 (936)
+++|||+|+..|.+...+..+.+ ....++||||||+|.+ .
T Consensus 148 ~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~ 226 (551)
T 3crv_A 148 KADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLRE 226 (551)
T ss_dssp GCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTT
T ss_pred cCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999988765544333 4678999999999875 1
Q ss_pred -----------------CHHHHHHH----------------------------H--------------------------
Q psy7557 240 -----------------FEPQINKT----------------------------S-------------------------- 248 (936)
Q Consensus 240 -----------------~~~~~~~i----------------------------~-------------------------- 248 (936)
+...+..+ .
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~ 306 (551)
T 3crv_A 227 VVLPDEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISY 306 (551)
T ss_dssp SCCSCSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHH
T ss_pred HhhccccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHH
Confidence 00000000 0
Q ss_pred --hhcCCC-CcEEEEEeccchHHHHHHHHhcCC-CEEEEeCCCCcccCCceEEEEEE-eCc---------hhhHHHHHHH
Q psy7557 249 --IYINPN-RQTVMTSATWNKDVQRVAKKYMVN-PVKVNVGSLDLAATHTVTQKIII-LDE---------DEKKDWLMEF 314 (936)
Q Consensus 249 --~~~~~~-~q~~~~SAT~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~-~~~---------~~k~~~l~~~ 314 (936)
..+... ..+|++|||+.+ ...+...+..+ +....+.......+. ..+..+. ... ..-...+.+.
T Consensus 307 ~l~~~~~~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf-~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~ 384 (551)
T 3crv_A 307 YLNLLNDNELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRV-SGSYECYIGVDVTSKYDMRSDNMWKRYADY 384 (551)
T ss_dssp HHGGGGCTTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCC-SCEEEEEEECSCCCCTTTCCHHHHHHHHHH
T ss_pred HHHHHhccCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcC-CCceEEEEeCCCCCccccCCHHHHHHHHHH
Confidence 001122 678999999986 44455554443 332100000000011 1222222 111 1112334443
Q ss_pred HHhc-cCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEe--cccccCCCCC--
Q psy7557 315 FDNM-DEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVAT--DVASRGLDVP-- 389 (936)
Q Consensus 315 l~~~-~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT--~~~~~GiDip-- 389 (936)
+... ...++.++||++|....+.+++. .+..+..-..+++ +...++.|+.+.-.||+|| ..+++|||+|
T Consensus 385 i~~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~ 458 (551)
T 3crv_A 385 LLKIYFQAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNN 458 (551)
T ss_dssp HHHHHHHCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEET
T ss_pred HHHHHHhCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceeccccccccc
Confidence 3332 23467999999999998888863 2333433333555 3556777854344799998 6999999999
Q ss_pred ---CCcEEEEecCCC
Q psy7557 390 ---DLTHVINYDFPS 401 (936)
Q Consensus 390 ---~v~~VI~~d~p~ 401 (936)
..++||..++|.
T Consensus 459 ~g~~l~~viI~~lPf 473 (551)
T 3crv_A 459 DRSLISDVVIVGIPY 473 (551)
T ss_dssp TEESEEEEEEESCCC
T ss_pred CCcceeEEEEEcCCC
Confidence 478899988874
No 176
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.69 E-value=1.6e-21 Score=191.00 Aligned_cols=120 Identities=33% Similarity=0.584 Sum_probs=110.5
Q ss_pred eEEEEEEcCc-chhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCC
Q psy7557 815 VTQKIIILDE-DEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYA 893 (936)
Q Consensus 815 ~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~ 893 (936)
+.+.+..++. ..|...|.+++... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.
T Consensus 4 i~~~~~~~~~~~~k~~~l~~ll~~~--~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~ 81 (170)
T 2yjt_D 4 IHQWYYRADDLEHKTALLVHLLKQP--EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 81 (170)
Confidence 4566666666 77888888888764 45789999999999999999999999999999999999999999999999999
Q ss_pred cEEEecccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 894 RICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 894 ~vLVaT~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.
T Consensus 82 ~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~ 124 (170)
T 2yjt_D 82 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARA 124 (170)
Confidence 9999999999999999999999999999999999999999995
No 177
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.80 E-value=4.7e-20 Score=196.99 Aligned_cols=154 Identities=15% Similarity=0.075 Sum_probs=123.6
Q ss_pred CCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhccC-C
Q psy7557 618 TPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDY-K 696 (936)
Q Consensus 618 ~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~-~ 696 (936)
.|+|+|.++++.++.+++.++++|||+|||+++++++...+.. .+.++||++||++|+.|+.+.++++.. .
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~--------~~~~~lil~Pt~~L~~q~~~~l~~~~~~~ 184 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN--------YEGKILIIVPTTALTTQMADDFVDYRLFS 184 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH--------CSSEEEEECSSHHHHHHHHHHHHHHTSCC
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc--------CCCeEEEEECCHHHHHHHHHHHHHhcccc
Confidence 8999999999999988899999999999999998877665421 234899999999999999999999853 4
Q ss_pred CCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHHHhhhcCCCce
Q psy7557 697 GLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQ 776 (936)
Q Consensus 697 ~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q 776 (936)
+..+..++||..... ....+++|+|+||+++... ....++++++||+||||++.+ ..+..+...+.+..+
T Consensus 185 ~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~ 254 (282)
T 1rif_A 185 HAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMF 254 (282)
T ss_dssp GGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCE
T ss_pred cceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCe
Confidence 567788888865543 1224589999999877432 223467899999999999874 477778888877899
Q ss_pred EEEEEecCChHHH
Q psy7557 777 TVMTSATWNKDVQ 789 (936)
Q Consensus 777 ~v~~SAT~~~~~~ 789 (936)
++++|||++....
T Consensus 255 ~l~lSATp~~~~~ 267 (282)
T 1rif_A 255 KFGLSGSLRDGKA 267 (282)
T ss_dssp EEEECSSCCTTST
T ss_pred EEEEeCCCCCcch
Confidence 9999999976543
No 178
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.77 E-value=2.5e-17 Score=192.44 Aligned_cols=284 Identities=15% Similarity=0.097 Sum_probs=181.3
Q ss_pred CCCCCcHHHHHHHHhh----hcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHH
Q psy7557 615 SFTTPSPIQAQAWPIL----MSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREV 690 (936)
Q Consensus 615 g~~~p~~iQ~~ai~~~----l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~ 690 (936)
|| .|+|.|.+++..+ ..|+++++.||||+|||++|++|++. .+++++|++||++|+.|+.+.+
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~------------~~~~v~i~~pt~~l~~q~~~~~ 67 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE------------VKPKVLFVVRTHNEFYPIYRDL 67 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH------------HCSEEEEEESSGGGHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh------------CCCeEEEEcCCHHHHHHHHHHH
Confidence 46 7999999977654 47899999999999999999999985 2579999999999999999999
Q ss_pred Hhcc-CCCCEEEEEECCccc---------------------------------hHHH------------------HHHhc
Q psy7557 691 NKID-YKGLKAVCVYGGKEL---------------------------------EPQL------------------EKIRE 718 (936)
Q Consensus 691 ~~~~-~~~~~~~~~~gg~~~---------------------------------~~~~------------------~~l~~ 718 (936)
..+. ..+++++.+.|+... .... .....
T Consensus 68 ~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~ 147 (551)
T 3crv_A 68 TKIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLY 147 (551)
T ss_dssp TTCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGG
T ss_pred HHHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhh
Confidence 9874 336777777764221 1111 22234
Q ss_pred CceEEEeCchHHHHHHHcCCCCC-CCceEEEEcccchhccCC--------------------------------------
Q psy7557 719 GCHILIATPGRLNDFVSRASIDL-KAVSFVVLDEADRMLDLG-------------------------------------- 759 (936)
Q Consensus 719 ~~~IiV~Tp~~l~~~l~~~~~~~-~~i~~lViDEah~l~~~~-------------------------------------- 759 (936)
+++|||+|+..+.+...+..+.+ ....++||||||+|.+ .
T Consensus 148 ~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~ 226 (551)
T 3crv_A 148 KADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLRE 226 (551)
T ss_dssp GCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTT
T ss_pred cCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999987654443333 4678999999998765 1
Q ss_pred -----------------CHHHHHHHh------------------------------------------------------
Q psy7557 760 -----------------FEPQINKTS------------------------------------------------------ 768 (936)
Q Consensus 760 -----------------~~~~~~~i~------------------------------------------------------ 768 (936)
+...+..+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~ 306 (551)
T 3crv_A 227 VVLPDEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISY 306 (551)
T ss_dssp SCCSCSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHH
T ss_pred HhhccccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHH
Confidence 000000000
Q ss_pred --hhcCCC-ceEEEEEecCChHHHHHHHHhcCC-CeEEEeC--CCCcccCCceEEEEEEcC---c------chhHHHHHH
Q psy7557 769 --IYINPN-RQTVMTSATWNKDVQRVAKKYMVN-PVKVNVG--SLDLAATHTVTQKIIILD---E------DEKKDWLME 833 (936)
Q Consensus 769 --~~~~~~-~q~v~~SAT~~~~~~~~~~~~~~~-~~~i~~~--~~~~~~~~~~~~~~~~~~---~------~~k~~~l~~ 833 (936)
..+... ..+|++|||+++ ...+...+..+ +....+. ..+..... ...+.+.. . ..-...+.+
T Consensus 307 ~l~~~~~~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf~~--~~~l~v~~~~~~~~~~r~~~~~~~l~~ 383 (551)
T 3crv_A 307 YLNLLNDNELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRVSG--SYECYIGVDVTSKYDMRSDNMWKRYAD 383 (551)
T ss_dssp HHGGGGCTTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCCSC--EEEEEEECSCCCCTTTCCHHHHHHHHH
T ss_pred HHHHHhccCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcCCC--ceEEEEeCCCCCccccCCHHHHHHHHH
Confidence 001122 688999999976 45555555544 3321000 00111111 11111111 1 111233333
Q ss_pred HHHhc-cCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEec--ccCccCCCCC-
Q psy7557 834 FFDNM-DEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVAT--DVASRGLDVP- 909 (936)
Q Consensus 834 ~l~~~-~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT--~~~~~Gidip- 909 (936)
.+... ....+.++||++|....+.++.. .+..+..-..+++ +...++.|+.+...||+|| ..+.+|||+|
T Consensus 384 ~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d 457 (551)
T 3crv_A 384 YLLKIYFQAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRN 457 (551)
T ss_dssp HHHHHHHHCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEE
T ss_pred HHHHHHHhCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccc
Confidence 33322 22356899999999999988862 3333333333455 4557778864445899998 6999999999
Q ss_pred ----CCCEEEEccCCC
Q psy7557 910 ----DLTHVINYDFPS 921 (936)
Q Consensus 910 ----~v~~VI~~d~p~ 921 (936)
.+++||..++|.
T Consensus 458 ~~g~~l~~viI~~lPf 473 (551)
T 3crv_A 458 NDRSLISDVVIVGIPY 473 (551)
T ss_dssp TTEESEEEEEEESCCC
T ss_pred cCCcceeEEEEEcCCC
Confidence 478899988873
No 179
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.75 E-value=5.6e-18 Score=175.02 Aligned_cols=137 Identities=15% Similarity=0.092 Sum_probs=109.4
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhccCCC
Q psy7557 98 TPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG 177 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~ 177 (936)
+|+++|.++++.+++++++++++|||+|||.+++.++... +.+++|++|+++|+.|+.+.+.++ +
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------------~~~~liv~P~~~L~~q~~~~~~~~---~ 157 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------------STPTLIVVPTLALAEQWKERLGIF---G 157 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------------CSCEEEEESSHHHHHHHHHHHGGG---C
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------------CCCEEEEeCCHHHHHHHHHHHHhC---C
Confidence 7899999999999999999999999999999988766531 457999999999999999999985 5
Q ss_pred CE-EEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHHHhhcCCCCc
Q psy7557 178 LK-AVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQ 256 (936)
Q Consensus 178 ~~-~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q 256 (936)
++ +..+.|+... ..+|+|+||+.+...... ...++++|||||||++.+..+.. +...++ ..+
T Consensus 158 ~~~v~~~~g~~~~---------~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~~~~----i~~~~~-~~~ 220 (237)
T 2fz4_A 158 EEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYVQ----IAQMSI-APF 220 (237)
T ss_dssp GGGEEEESSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTTHHH----HHHTCC-CSE
T ss_pred CCeEEEEeCCCCC---------cCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChHHHH----HHHhcc-CCE
Confidence 66 7777666542 478999999988665432 12468999999999998766543 444443 678
Q ss_pred EEEEEeccch
Q psy7557 257 TVMTSATWNK 266 (936)
Q Consensus 257 ~~~~SAT~~~ 266 (936)
++++|||++.
T Consensus 221 ~l~LSATp~r 230 (237)
T 2fz4_A 221 RLGLTATFER 230 (237)
T ss_dssp EEEEEESCC-
T ss_pred EEEEecCCCC
Confidence 9999999874
No 180
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.74 E-value=1.1e-17 Score=172.96 Aligned_cols=138 Identities=14% Similarity=0.102 Sum_probs=108.9
Q ss_pred CCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhccCCC
Q psy7557 618 TPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG 697 (936)
Q Consensus 618 ~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~ 697 (936)
.|+|+|.+++..++.++++++++|||+|||++++.++... +.+++|++|+++|+.|+.+.+.++ +
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------------~~~~liv~P~~~L~~q~~~~~~~~---~ 157 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------------STPTLIVVPTLALAEQWKERLGIF---G 157 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------------CSCEEEEESSHHHHHHHHHHHGGG---C
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------------CCCEEEEeCCHHHHHHHHHHHHhC---C
Confidence 7899999999999999999999999999999988776531 457999999999999999999885 5
Q ss_pred CE-EEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHHHhhhcCCCce
Q psy7557 698 LK-AVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQ 776 (936)
Q Consensus 698 ~~-~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q 776 (936)
++ +..+.|+... ..+|+|+||+.+...... ...++++|||||||++.+..+. .+...+ +..+
T Consensus 158 ~~~v~~~~g~~~~---------~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~~~----~i~~~~-~~~~ 220 (237)
T 2fz4_A 158 EEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYV----QIAQMS-IAPF 220 (237)
T ss_dssp GGGEEEESSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTTHH----HHHHTC-CCSE
T ss_pred CCeEEEEeCCCCC---------cCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChHHH----HHHHhc-cCCE
Confidence 66 6666665432 468999999998765542 1246899999999999776544 343444 3678
Q ss_pred EEEEEecCChH
Q psy7557 777 TVMTSATWNKD 787 (936)
Q Consensus 777 ~v~~SAT~~~~ 787 (936)
++++|||+++.
T Consensus 221 ~l~LSATp~r~ 231 (237)
T 2fz4_A 221 RLGLTATFERE 231 (237)
T ss_dssp EEEEEESCC--
T ss_pred EEEEecCCCCC
Confidence 89999998753
No 181
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.71 E-value=4.1e-17 Score=171.32 Aligned_cols=129 Identities=17% Similarity=0.231 Sum_probs=102.4
Q ss_pred eCchhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhc-CCceeeecCCCCHHHHHHHHHHhhcC-CcE-EEEE
Q psy7557 302 LDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQ-YRKSCSLYGDLSQEDREIALEDITSG-YAR-ICVA 378 (936)
Q Consensus 302 ~~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~-~~~~~~~h~~~~~~~R~~~~~~f~~g-~~~-vLva 378 (936)
.....|...|.+++......+.++||||++...++.++..|... ++.+..+||++++.+|..+++.|++| ..+ +|+|
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 34567888899988876556789999999999999999999885 99999999999999999999999999 777 7899
Q ss_pred ecccccCCCCCCCcEEEEecCCCCccccccCCCCcccCCCceeE--EEEecccC
Q psy7557 379 TDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGES--ITLMTRKD 430 (936)
Q Consensus 379 T~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~--~~~~~~~~ 430 (936)
|+++++|+|++++++||+||+|+++..|.||+||++|.|+.+.+ +.|++.+.
T Consensus 172 t~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~T 225 (271)
T 1z5z_A 172 VKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 225 (271)
T ss_dssp CCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTS
T ss_pred hhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCC
Confidence 99999999999999999999999999999999999999988754 55666654
No 182
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.64 E-value=2.3e-15 Score=176.83 Aligned_cols=81 Identities=22% Similarity=0.219 Sum_probs=66.3
Q ss_pred CCcHHHHHHHHH----HhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhc
Q psy7557 98 TPSPIQAQAWPI----LMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 173 (936)
Q Consensus 98 ~~~~~Q~~ai~~----~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 173 (936)
+|+|.|.+.+.. +.+|+++++.||||+|||++|++|++.++.. .+++++|++||++|+.|+.+.+..+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~--------~~~kvli~t~T~~l~~Qi~~el~~l 74 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE--------RKLKVLYLVRTNSQEEQVIKELRSL 74 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH--------HTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh--------cCCeEEEECCCHHHHHHHHHHHHHH
Confidence 689999999864 4579999999999999999999999987642 3579999999999999999999886
Q ss_pred c-CCCCEEEEEeCC
Q psy7557 174 D-YKGLKAVCVYGG 186 (936)
Q Consensus 174 ~-~~~~~~~~~~gg 186 (936)
. ..++++..++|+
T Consensus 75 ~~~~~~~~~~l~gr 88 (620)
T 4a15_A 75 SSTMKIRAIPMQGR 88 (620)
T ss_dssp HHHSCCCEEECCCH
T ss_pred hhccCeEEEEEECC
Confidence 4 236777766654
No 183
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.62 E-value=1.2e-15 Score=160.25 Aligned_cols=115 Identities=17% Similarity=0.219 Sum_probs=96.9
Q ss_pred cCcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhc-CCceEEEeCCCCHHHHHHHHHHhhcC-CCc-EEEe
Q psy7557 822 LDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQ-YRKSCSLYGDLSQEDREIALEDITSG-YAR-ICVA 898 (936)
Q Consensus 822 ~~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~-~~~~~~~h~~l~~~~R~~~~~~F~~g-~~~-vLVa 898 (936)
.....|...+.+++......+.++||||+++..++.+...|... ++.+..+||++++.+|..+++.|++| ..+ +|++
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 35577899999988887556789999999999999999999885 99999999999999999999999999 777 7999
Q ss_pred cccCccCCCCCCCCEEEEccCCCChhhhHhhhhhccCC
Q psy7557 899 TDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936 (936)
Q Consensus 899 T~~~~~Gidip~v~~VI~~d~p~s~~~yiqr~GRaGR~ 936 (936)
|+++++|+|++++++||+||+|.++..|+||+||++|.
T Consensus 172 t~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~ 209 (271)
T 1z5z_A 172 VKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRI 209 (271)
T ss_dssp CCTTCCCCCCTTCSEEEECSCCSCTTTC----------
T ss_pred hhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhcccc
Confidence 99999999999999999999999999999999999994
No 184
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.54 E-value=8.2e-14 Score=163.62 Aligned_cols=81 Identities=22% Similarity=0.219 Sum_probs=65.0
Q ss_pred CCcHHHHHHHHh----hhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc
Q psy7557 618 TPSPIQAQAWPI----LMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693 (936)
Q Consensus 618 ~p~~iQ~~ai~~----~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 693 (936)
.|+|.|.+.+.. +.+|+++++.||||+|||++|++|++.+... .+++++|++||++|+.|+.+.+..+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~--------~~~kvli~t~T~~l~~Qi~~el~~l 74 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE--------RKLKVLYLVRTNSQEEQVIKELRSL 74 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH--------HTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh--------cCCeEEEECCCHHHHHHHHHHHHHH
Confidence 689999998864 4579999999999999999999999987642 3579999999999999999999887
Q ss_pred c-CCCCEEEEEECC
Q psy7557 694 D-YKGLKAVCVYGG 706 (936)
Q Consensus 694 ~-~~~~~~~~~~gg 706 (936)
. ..+++++.+.|+
T Consensus 75 ~~~~~~~~~~l~gr 88 (620)
T 4a15_A 75 SSTMKIRAIPMQGR 88 (620)
T ss_dssp HHHSCCCEEECCCH
T ss_pred hhccCeEEEEEECC
Confidence 4 235666665553
No 185
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.68 E-value=2.2e-08 Score=117.43 Aligned_cols=145 Identities=21% Similarity=0.192 Sum_probs=89.8
Q ss_pred cHHHHHHHHHHhcCCcEEEEecCCCCcc--hhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhcc-CC
Q psy7557 100 SPIQAQAWPILMSGHDMIGIAQTGTGKT--FAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID-YK 176 (936)
Q Consensus 100 ~~~Q~~ai~~~~~g~d~l~~apTGsGKT--~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~-~~ 176 (936)
++.|..|++.++.++++++.|++||||| ++++++.+..... ..+.++++++||..+|.++.+.+.... ..
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~-------~~~~~vll~APTg~AA~~L~e~~~~~~~~l 223 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD-------GERCRIRLAAPTGKAAARLTESLGKALRQL 223 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS-------SCCCCEEEEBSSHHHHHHHHHHHTHHHHHS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh-------cCCCeEEEEeCChhHHHHHHHHHHHHHhcC
Confidence 7899999999999999999999999999 6677777755421 245689999999999999988876531 11
Q ss_pred CCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHHHhhcCCCCc
Q psy7557 177 GLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQ 256 (936)
Q Consensus 177 ~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q 256 (936)
++..... .+... ....+ ..++-.+|+.. . +.........+++||||||+ |++ ...+..++..++...|
T Consensus 224 ~l~~~~~-~~~~~--~~~Ti---h~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l~~~~~ 291 (608)
T 1w36_D 224 PLTDEQK-KRIPE--DASTL---HRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEAS-MID---LPMMSRLIDALPDHAR 291 (608)
T ss_dssp SCCSCCC-CSCSC--CCBTT---TSCC-------------CTTSCCSCSEEEECSGG-GCB---HHHHHHHHHTCCTTCE
T ss_pred CCCHHHH-hccch--hhhhh---HhhhccCCCch-H-HHhccCCCCCCCEEEEechh-hCC---HHHHHHHHHhCCCCCE
Confidence 2110000 00000 00000 11222233321 1 11111222378999999999 554 5667788888888888
Q ss_pred EEEEEec
Q psy7557 257 TVMTSAT 263 (936)
Q Consensus 257 ~~~~SAT 263 (936)
++++.-.
T Consensus 292 liLvGD~ 298 (608)
T 1w36_D 292 VIFLGDR 298 (608)
T ss_dssp EEEEECT
T ss_pred EEEEcch
Confidence 8877644
No 186
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.62 E-value=4.5e-08 Score=114.83 Aligned_cols=145 Identities=21% Similarity=0.197 Sum_probs=90.3
Q ss_pred cHHHHHHHHhhhcCCcEEEEecCCCCcc--hhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhcc-CC
Q psy7557 620 SPIQAQAWPILMSGHDMIGIAQTGTGKT--FAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID-YK 696 (936)
Q Consensus 620 ~~iQ~~ai~~~l~g~d~i~~apTGsGKT--l~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~-~~ 696 (936)
++.|..|++.++.++++++.|++||||| ++++++.+.... ...+.++++++||..+|.++.+.+.... ..
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~-------~~~~~~vll~APTg~AA~~L~e~~~~~~~~l 223 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA-------DGERCRIRLAAPTGKAAARLTESLGKALRQL 223 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTC-------SSCCCCEEEEBSSHHHHHHHHHHHTHHHHHS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhh-------hcCCCeEEEEeCChhHHHHHHHHHHHHHhcC
Confidence 7899999999999999999999999999 667777775431 1246789999999999999988876531 11
Q ss_pred CCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHHHhhhcCCCce
Q psy7557 697 GLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQ 776 (936)
Q Consensus 697 ~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q 776 (936)
++..... .+..... ..-..++-.+|+.. . +.........+++||||||+ |++ ...+..++..++...|
T Consensus 224 ~l~~~~~-~~~~~~~-----~Tih~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l~~~~~ 291 (608)
T 1w36_D 224 PLTDEQK-KRIPEDA-----STLHRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEAS-MID---LPMMSRLIDALPDHAR 291 (608)
T ss_dssp SCCSCCC-CSCSCCC-----BTTTSCC-------------CTTSCCSCSEEEECSGG-GCB---HHHHHHHHHTCCTTCE
T ss_pred CCCHHHH-hccchhh-----hhhHhhhccCCCch-H-HHhccCCCCCCCEEEEechh-hCC---HHHHHHHHHhCCCCCE
Confidence 1110000 0000000 00011222233321 1 11122223378999999999 555 4567778888888899
Q ss_pred EEEEEec
Q psy7557 777 TVMTSAT 783 (936)
Q Consensus 777 ~v~~SAT 783 (936)
++++.-.
T Consensus 292 liLvGD~ 298 (608)
T 1w36_D 292 VIFLGDR 298 (608)
T ss_dssp EEEEECT
T ss_pred EEEEcch
Confidence 9988644
No 187
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.78 E-value=9.4e-05 Score=85.68 Aligned_cols=125 Identities=16% Similarity=0.179 Sum_probs=78.9
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhccCCC
Q psy7557 98 TPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG 177 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~ 177 (936)
.+++.|.+|+..++.++.+++.||.|||||.+.. .++..+. ..+.++++++||...|..+.+.+..
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~-~l~~~l~--------~~g~~Vl~~ApT~~Aa~~L~e~~~~----- 254 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTK-AVADLAE--------SLGLEVGLCAPTGKAARRLGEVTGR----- 254 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHH-HHHHHHH--------HTTCCEEEEESSHHHHHHHHHHHTS-----
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHH-HHHHHHH--------hcCCeEEEecCcHHHHHHhHhhhcc-----
Confidence 5799999999999998999999999999997532 2333222 2456899999999998887765421
Q ss_pred CEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHHHhhcCCCCcE
Q psy7557 178 LKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQT 257 (936)
Q Consensus 178 ~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~ 257 (936)
.... . ..+.. . .|+. ...........++||||||+.+. ...+..++..++...++
T Consensus 255 -~a~T------i----h~ll~---~---~~~~----~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~~~~l 309 (574)
T 3e1s_A 255 -TAST------V----HRLLG---Y---GPQG----FRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPPGARV 309 (574)
T ss_dssp -CEEE------H----HHHTT---E---ETTE----ESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCTTCEE
T ss_pred -cHHH------H----HHHHc---C---Ccch----hhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCcCCCEE
Confidence 1110 0 11100 0 0000 00111223467899999999763 34566667666666666
Q ss_pred EEEE
Q psy7557 258 VMTS 261 (936)
Q Consensus 258 ~~~S 261 (936)
+++.
T Consensus 310 ilvG 313 (574)
T 3e1s_A 310 LLVG 313 (574)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6543
No 188
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.73 E-value=0.00015 Score=84.07 Aligned_cols=126 Identities=17% Similarity=0.178 Sum_probs=80.6
Q ss_pred CCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhccCCC
Q psy7557 618 TPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG 697 (936)
Q Consensus 618 ~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~ 697 (936)
.+++.|.+|+..++.++.+++.|+.|+|||.... .++..+. ..+.++++++||...|..+.+.+..
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~-~l~~~l~--------~~g~~Vl~~ApT~~Aa~~L~e~~~~----- 254 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTK-AVADLAE--------SLGLEVGLCAPTGKAARRLGEVTGR----- 254 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHH-HHHHHHH--------HTTCCEEEEESSHHHHHHHHHHHTS-----
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHH-HHHHHHH--------hcCCeEEEecCcHHHHHHhHhhhcc-----
Confidence 6899999999999999999999999999997532 2332222 2467899999999998877665421
Q ss_pred CEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHHHhhhcCCCceE
Q psy7557 698 LKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQT 777 (936)
Q Consensus 698 ~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~ 777 (936)
....+ ..+.. . .|+. +..........++|||||++.+. ...+..+...++...++
T Consensus 255 -~a~Ti----------h~ll~---~---~~~~----~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~~~~l 309 (574)
T 3e1s_A 255 -TASTV----------HRLLG---Y---GPQG----FRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPPGARV 309 (574)
T ss_dssp -CEEEH----------HHHTT---E---ETTE----ESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCTTCEE
T ss_pred -cHHHH----------HHHHc---C---Ccch----hhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCcCCCEE
Confidence 11100 01100 0 0000 01112234467899999999653 34666677777777777
Q ss_pred EEEEe
Q psy7557 778 VMTSA 782 (936)
Q Consensus 778 v~~SA 782 (936)
+++.-
T Consensus 310 ilvGD 314 (574)
T 3e1s_A 310 LLVGD 314 (574)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 77643
No 189
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.73 E-value=5.5e-05 Score=89.74 Aligned_cols=67 Identities=21% Similarity=0.248 Sum_probs=52.9
Q ss_pred CCcHHHHHHHHHHhcCCc-EEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhc
Q psy7557 98 TPSPIQAQAWPILMSGHD-MIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 173 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~~g~d-~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 173 (936)
.+++-|.+|+..+++.++ .|+.||.|||||.+.. -++.++. ..+.++|+++||..-+.++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~-~~I~~l~--------~~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVV-EIILQAV--------KQGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHH-HHHHHHH--------HTTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHH-HHHHHHH--------hCCCeEEEEcCchHHHHHHHHHHHhc
Confidence 578999999999998776 5777999999998743 3333333 23568999999999999998888764
No 190
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.68 E-value=0.0002 Score=84.32 Aligned_cols=69 Identities=20% Similarity=0.200 Sum_probs=54.6
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhc
Q psy7557 97 TTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 173 (936)
Q Consensus 97 ~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 173 (936)
..+++.|.+|+..++.+.-.++.||+|||||.+.. .++..+.. ..+.++++++||...+.++.+.+.+.
T Consensus 179 ~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~-~~i~~l~~-------~~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLAR-------QGNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp CCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHH-HHHHHHHT-------SSSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHH-HHHHHHHH-------cCCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 46799999999999887778999999999998643 23333332 13568999999999999999888764
No 191
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.68 E-value=0.00019 Score=84.56 Aligned_cols=70 Identities=20% Similarity=0.207 Sum_probs=55.3
Q ss_pred CCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc
Q psy7557 616 FTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693 (936)
Q Consensus 616 ~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 693 (936)
+..+++.|.+|+..++.+.-.++.||+|||||.+.. .++..+.. ..+.++++++||...|.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~-~~i~~l~~-------~~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLAR-------QGNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHH-HHHHHHHT-------SSSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHH-HHHHHHHH-------cCCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 457899999999999987888999999999997643 23333321 14668999999999999999888764
No 192
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.65 E-value=6.3e-05 Score=89.26 Aligned_cols=67 Identities=21% Similarity=0.237 Sum_probs=52.7
Q ss_pred CCcHHHHHHHHhhhcCCc-EEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc
Q psy7557 618 TPSPIQAQAWPILMSGHD-MIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693 (936)
Q Consensus 618 ~p~~iQ~~ai~~~l~g~d-~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 693 (936)
.+++-|.+|+..+++.++ .++.||.|||||.+..- ++.++. ..+.++|+++||..-|.++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~-~I~~l~--------~~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVE-IILQAV--------KQGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHH-HHHHHH--------HTTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHH-HHHHHH--------hCCCeEEEEcCchHHHHHHHHHHHhc
Confidence 679999999999987665 67889999999976433 333332 23678999999999999998888664
No 193
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.64 E-value=0.00023 Score=80.65 Aligned_cols=70 Identities=19% Similarity=0.213 Sum_probs=50.8
Q ss_pred hCCCCCCcHHHHHHHHhhhcC-----CcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHH
Q psy7557 613 NLSFTTPSPIQAQAWPILMSG-----HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIE 687 (936)
Q Consensus 613 ~~g~~~p~~iQ~~ai~~~l~g-----~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~ 687 (936)
-+.|..+++-|.+|+..++.. ..+++.|+.|||||.+.. .++..+.. .....+++++||...|..+.
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~-~~~~~l~~-------~~~~~il~~a~T~~Aa~~l~ 91 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTK-FIIEALIS-------TGETGIILAAPTHAAKKILS 91 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHH-HHHHHHHH-------TTCCCEEEEESSHHHHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHH-HHHHHHHh-------cCCceEEEecCcHHHHHHHH
Confidence 367889999999999977532 389999999999996532 33333322 11247899999999887776
Q ss_pred HHH
Q psy7557 688 REV 690 (936)
Q Consensus 688 ~~~ 690 (936)
+.+
T Consensus 92 ~~~ 94 (459)
T 3upu_A 92 KLS 94 (459)
T ss_dssp HHH
T ss_pred hhh
Confidence 655
No 194
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.63 E-value=0.00024 Score=80.54 Aligned_cols=71 Identities=17% Similarity=0.186 Sum_probs=50.9
Q ss_pred HhCCCCCCcHHHHHHHHHHhcC----C-cEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHH
Q psy7557 92 ENLSFTTPSPIQAQAWPILMSG----H-DMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQI 166 (936)
Q Consensus 92 ~~~g~~~~~~~Q~~ai~~~~~g----~-d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~ 166 (936)
.-+.|..+++-|.+|+..++.. + .+++.|+.|||||.+. ..++..+... ....+++++||...|..+
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~-------~~~~il~~a~T~~Aa~~l 90 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST-------GETGIILAAPTHAAKKIL 90 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT-------TCCCEEEEESSHHHHHHH
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc-------CCceEEEecCcHHHHHHH
Confidence 3456889999999999977532 3 8999999999999753 2333333321 123799999999988877
Q ss_pred HHHH
Q psy7557 167 EREV 170 (936)
Q Consensus 167 ~~~~ 170 (936)
.+.+
T Consensus 91 ~~~~ 94 (459)
T 3upu_A 91 SKLS 94 (459)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 7665
No 195
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.00031 Score=84.54 Aligned_cols=69 Identities=17% Similarity=0.181 Sum_probs=54.3
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhc
Q psy7557 97 TTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 173 (936)
Q Consensus 97 ~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 173 (936)
..+++.|.+|+..++++.-+++.||.|||||.+..- ++..+.. ..+.++++++||...|.++.+.+.+.
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~-~i~~l~~-------~~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLSK-------IHKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHH-HHHHHHH-------HHCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHH-HHHHHHh-------CCCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 457899999999998877789999999999986432 3333321 13568999999999999999988774
No 196
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.00034 Score=84.26 Aligned_cols=70 Identities=19% Similarity=0.212 Sum_probs=55.3
Q ss_pred CCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc
Q psy7557 616 FTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693 (936)
Q Consensus 616 ~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 693 (936)
+..+++.|.+|+..++++.-+++.||.|||||.+..- ++.++.. ..+.++|+++||...|.++.+.+.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~-~i~~l~~-------~~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLSK-------IHKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHH-HHHHHHH-------HHCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHH-HHHHHHh-------CCCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 4578999999999998877789999999999976432 3333321 13568999999999999999988775
No 197
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.54 E-value=0.00034 Score=84.14 Aligned_cols=69 Identities=20% Similarity=0.200 Sum_probs=54.4
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhc
Q psy7557 97 TTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 173 (936)
Q Consensus 97 ~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 173 (936)
..+++.|.+|+..++.+.-.++.||.|||||.+.. .++..+.. ..+.++++++||...|.++.+.+...
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~-------~~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLAR-------QGNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHT-------TCSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHH-------cCCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 35789999999999887778999999999998643 33433332 13568999999999999998888764
No 198
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.45 E-value=0.0006 Score=81.93 Aligned_cols=70 Identities=20% Similarity=0.207 Sum_probs=55.2
Q ss_pred CCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc
Q psy7557 616 FTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693 (936)
Q Consensus 616 ~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 693 (936)
...+++.|.+|+..++.+.-.++.||.|+|||.+.. .++..+.. ..+.++++++||...|.++.+.+...
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~-------~~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLAR-------QGNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHT-------TCSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHH-------cCCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 447899999999999988888999999999997633 33333322 14568999999999999998888764
No 199
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.08 E-value=0.011 Score=70.29 Aligned_cols=70 Identities=14% Similarity=0.207 Sum_probs=52.2
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhc
Q psy7557 97 TTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 173 (936)
Q Consensus 97 ~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 173 (936)
..+++-|.+|+.. .+..++|.|+.|||||.+.+-- +.++.... .....++|++++|+..|.++.+.+.++
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~r-i~~l~~~~----~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHR-IAWLMSVE----NCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHH-HHHHHHTS----CCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHH-HHHHHHhC----CCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 4789999999973 3567999999999999874432 23333211 012347999999999999999999875
No 200
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=96.75 E-value=0.0061 Score=63.72 Aligned_cols=126 Identities=8% Similarity=0.038 Sum_probs=92.0
Q ss_pred CchhhHHHHHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEeccc
Q psy7557 303 DEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVA 382 (936)
Q Consensus 303 ~~~~k~~~l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~ 382 (936)
....|+..|-+++......+.+++||++..+..+-+..++...+++..-+.|.....++. -.+....+.+.|...
T Consensus 106 ~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsag 180 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSEG 180 (328)
T ss_dssp HTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSC
T ss_pred HcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECCC
Confidence 356788889999988888899999999999999999999999999999999985543222 124566666667776
Q ss_pred ccCCC-----CCCCcEEEEecCCCCccc-cccCCCCcccC----CCceeEEEEecccChhh
Q psy7557 383 SRGLD-----VPDLTHVINYDFPSHIEE-YVHRVGRTGRA----GKSGESITLMTRKDWSH 433 (936)
Q Consensus 383 ~~GiD-----ip~v~~VI~~d~p~s~~~-y~qr~GRagR~----g~~g~~~~~~~~~~~~~ 433 (936)
.-|+| ....++||.||.-.++.. .+|.+-|+-|. ++.-..+-+++....++
T Consensus 181 ~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh 241 (328)
T 3hgt_A 181 INFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDH 241 (328)
T ss_dssp CCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHH
T ss_pred CCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHH
Confidence 77776 678999999999888876 46755555444 34567888888776554
No 201
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.21 E-value=0.022 Score=61.84 Aligned_cols=69 Identities=12% Similarity=0.068 Sum_probs=53.7
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhc
Q psy7557 98 TPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 173 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 173 (936)
.|+|+|...+..+...+-+++..+-+.|||.+....++..+.. ..+..+++++|++.-|..+.+.++.+
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~-------~~g~~v~~vA~t~~qA~~vf~~i~~m 231 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-------NKDKAVGILAHKGSMSAEVLDRTKQA 231 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS-------SSSCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh-------CCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 7899999999876555678999999999999766555443332 24668999999999998888777664
No 202
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.17 E-value=0.033 Score=60.41 Aligned_cols=69 Identities=12% Similarity=0.068 Sum_probs=53.2
Q ss_pred CCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc
Q psy7557 618 TPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693 (936)
Q Consensus 618 ~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 693 (936)
.++|+|...+..+...+-+++..+-+.|||.+....++..... .++..+++++|+++-|..+.+.++.+
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~-------~~g~~v~~vA~t~~qA~~vf~~i~~m 231 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-------NKDKAVGILAHKGSMSAEVLDRTKQA 231 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS-------SSSCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh-------CCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 7899999998876555678999999999998766554443322 34678999999999988877777654
No 203
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.11 E-value=0.0082 Score=58.07 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=16.4
Q ss_pred cCCcEEEEecCCCCcchhc
Q psy7557 112 SGHDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 112 ~g~d~l~~apTGsGKT~~~ 130 (936)
.|+.++++||+|+|||..+
T Consensus 37 ~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp GCCEEEECCSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4788999999999999854
No 204
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=96.03 E-value=0.023 Score=59.33 Aligned_cols=106 Identities=7% Similarity=-0.001 Sum_probs=79.1
Q ss_pred CcchhHHHHHHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccC
Q psy7557 823 DEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVA 902 (936)
Q Consensus 823 ~~~~k~~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~ 902 (936)
....|+..|.+++......+.+++||++..+..+-+...+...++...-+.|.....++. -.+....+.+.|...
T Consensus 106 ~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsag 180 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSEG 180 (328)
T ss_dssp HTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSC
T ss_pred HcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECCC
Confidence 457899999999998888889999999999999999999999998888898885543222 124455555557766
Q ss_pred ccCCC-----CCCCCEEEEccCCCChhh-hHhhhhhc
Q psy7557 903 SRGLD-----VPDLTHVINYDFPSHIEE-YVHRVGRT 933 (936)
Q Consensus 903 ~~Gid-----ip~v~~VI~~d~p~s~~~-yiqr~GRa 933 (936)
.-|+| ....+.||.||.-.+... .+|.+-|+
T Consensus 181 ~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~ 217 (328)
T 3hgt_A 181 INFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQY 217 (328)
T ss_dssp CCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCC
T ss_pred CCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHH
Confidence 66776 678999999999877665 46644443
No 205
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.76 E-value=0.016 Score=55.90 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=23.0
Q ss_pred cHHHHHHHHhhh---------cCCcEEEEecCCCCcchhhH
Q psy7557 620 SPIQAQAWPILM---------SGHDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 620 ~~iQ~~ai~~~l---------~g~d~i~~apTGsGKTl~~~ 651 (936)
++-|.+++..+. .|+.+++.+|+|+|||..+-
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 445666655443 47889999999999997543
No 206
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=95.71 E-value=0.081 Score=61.60 Aligned_cols=142 Identities=10% Similarity=0.125 Sum_probs=83.4
Q ss_pred CCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhccC-C
Q psy7557 618 TPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDY-K 696 (936)
Q Consensus 618 ~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~-~ 696 (936)
.|+|+|...+..+-..+-+++..+-|+|||.+....++..+.. .++..+++++|+++.|..+.+.++.+.. .
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~-------~~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-------NKDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT-------SSSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh-------CCCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 6899999998877556789999999999998765444433322 2456899999999999988887776521 1
Q ss_pred C--CEE-EEEECCccchHHHHHHhcCceEEEe--CchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHHHhhhc
Q psy7557 697 G--LKA-VCVYGGKELEPQLEKIREGCHILIA--TPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYI 771 (936)
Q Consensus 697 ~--~~~-~~~~gg~~~~~~~~~l~~~~~IiV~--Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~ 771 (936)
. ++. ......... .+.+|..|.+. .|+.+... +.+++|+||+|.+-+. ...+..+...+
T Consensus 236 p~~~~~~~~~~~~~~i-----~~~nGs~i~~~s~~~~~lrG~---------~~~~~iiDE~~~~~~~--~~l~~~~~~~l 299 (592)
T 3cpe_A 236 PDFLQPGIVEWNKGSI-----ELDNGSSIGAYASSPDAVRGN---------SFAMIYIEDCAFIPNF--HDSWLAIQPVI 299 (592)
T ss_dssp CTTTSCCEEEECSSEE-----EETTSCEEEEEECCHHHHHHS---------CCSEEEEETGGGCTTH--HHHHHHHHHHH
T ss_pred hHhhccccccCCccEE-----EecCCCEEEEEeCCCCCccCC---------CcceEEEehhccCCch--hHHHHHHHHHh
Confidence 1 110 000011110 02234444433 34444321 3578999999976431 23334333333
Q ss_pred C--CCceEEEEEe
Q psy7557 772 N--PNRQTVMTSA 782 (936)
Q Consensus 772 ~--~~~q~v~~SA 782 (936)
. ++.+++++|.
T Consensus 300 ~~~~~~~ii~isT 312 (592)
T 3cpe_A 300 SSGRRSKIIITTT 312 (592)
T ss_dssp SSSSCCEEEEEEC
T ss_pred ccCCCceEEEEeC
Confidence 2 3455555553
No 207
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.50 E-value=0.049 Score=52.68 Aligned_cols=40 Identities=25% Similarity=0.154 Sum_probs=26.6
Q ss_pred cCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCH
Q psy7557 632 SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTR 680 (936)
Q Consensus 632 ~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~ 680 (936)
.|+=.++.+|.|+|||...+--+.... ..+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~---------~~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK---------LGKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH---------HTTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH---------HCCCeEEEEeecc
Confidence 355678899999999986542222221 2456899998873
No 208
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.45 E-value=0.054 Score=59.47 Aligned_cols=107 Identities=18% Similarity=0.065 Sum_probs=60.3
Q ss_pred cEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhccCCCCEEEEEECCccchHHHH
Q psy7557 635 DMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLE 714 (936)
Q Consensus 635 d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 714 (936)
=.++.|+.|||||.... ..+ . ....+|++||++++..+.+.+.+.+.. .
T Consensus 163 v~~I~G~aGsGKTt~I~----~~~-~---------~~~~lVlTpT~~aa~~l~~kl~~~~~~-----------~------ 211 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEIL----SRV-N---------FEEDLILVPGRQAAEMIRRRANASGII-----------V------ 211 (446)
T ss_dssp EEEEEECTTSCHHHHHH----HHC-C---------TTTCEEEESCHHHHHHHHHHHTTTSCC-----------C------
T ss_pred EEEEEcCCCCCHHHHHH----HHh-c---------cCCeEEEeCCHHHHHHHHHHhhhcCcc-----------c------
Confidence 46788999999997432 111 1 124599999999999888888542100 0
Q ss_pred HHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHHHhhhcCCCceEEEEEec
Q psy7557 715 KIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSAT 783 (936)
Q Consensus 715 ~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~v~~SAT 783 (936)
....-|.|-++++ +..........++||||||-. .+.+ .+..+....++ .+++++.-+
T Consensus 212 ----~~~~~V~T~dsfL--~~~~~~~~~~~d~liiDE~sm-~~~~---~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 212 ----ATKDNVRTVDSFL--MNYGKGARCQFKRLFIDEGLM-LHTG---CVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp ----CCTTTEEEHHHHH--HTTTSSCCCCCSEEEEETGGG-SCHH---HHHHHHHHTTC-SEEEEEECT
T ss_pred ----cccceEEEeHHhh--cCCCCCCCCcCCEEEEeCccc-CCHH---HHHHHHHhCCC-CEEEEecCc
Confidence 0112266755442 222222223578999999984 4433 23333333333 555555433
No 209
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=95.43 E-value=0.088 Score=61.30 Aligned_cols=69 Identities=12% Similarity=0.068 Sum_probs=54.2
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhc
Q psy7557 98 TPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 173 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 173 (936)
.|+|+|...+..+...+.+++.++-|+|||.+...-++..+.. ..+..+++++|++..|..+.+.++.+
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~-------~~~~~i~~va~t~~qA~~~~~~i~~~ 231 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-------NKDKAVGILAHKGSMSAEVLDRTKQA 231 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT-------SSSCEEEEEESSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh-------CCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 6899999998877556789999999999999765444433332 23568999999999999988877764
No 210
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.37 E-value=0.025 Score=59.74 Aligned_cols=20 Identities=5% Similarity=-0.208 Sum_probs=16.6
Q ss_pred cCCcEEEEecCCCCcchhch
Q psy7557 112 SGHDMIGIAQTGTGKTFAFL 131 (936)
Q Consensus 112 ~g~d~l~~apTGsGKT~~~~ 131 (936)
.+.++++.||+|+|||.+.-
T Consensus 44 ~~~~lli~GpPGTGKT~~v~ 63 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVN 63 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 34689999999999998643
No 211
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.31 E-value=0.037 Score=58.34 Aligned_cols=20 Identities=5% Similarity=-0.208 Sum_probs=16.7
Q ss_pred cCCcEEEEecCCCCcchhhH
Q psy7557 632 SGHDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 632 ~g~d~i~~apTGsGKTl~~~ 651 (936)
.+.++++.||+|+|||++.-
T Consensus 44 ~~~~lli~GpPGTGKT~~v~ 63 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVN 63 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35689999999999998654
No 212
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.26 E-value=0.052 Score=59.60 Aligned_cols=43 Identities=26% Similarity=0.292 Sum_probs=32.0
Q ss_pred EEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHh
Q psy7557 116 MIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK 172 (936)
Q Consensus 116 ~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 172 (936)
.++.|+.|+|||... ..... ....+|++||++++.++.+.+.+
T Consensus 164 ~~I~G~aGsGKTt~I-----~~~~~---------~~~~lVlTpT~~aa~~l~~kl~~ 206 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEI-----LSRVN---------FEEDLILVPGRQAAEMIRRRANA 206 (446)
T ss_dssp EEEEECTTSCHHHHH-----HHHCC---------TTTCEEEESCHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHH-----HHHhc---------cCCeEEEeCCHHHHHHHHHHhhh
Confidence 567799999999842 22221 12469999999999999888864
No 213
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.91 E-value=0.055 Score=52.33 Aligned_cols=39 Identities=21% Similarity=0.093 Sum_probs=26.0
Q ss_pred CCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcH
Q psy7557 113 GHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTR 160 (936)
Q Consensus 113 g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~ 160 (936)
|+=.+++||.|+|||...+--+. ... ..+.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~-~~~--------~~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVE-IYK--------LGKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH-HHH--------HTTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHH-HHH--------HCCCeEEEEeecc
Confidence 55567889999999987543222 221 2356788988873
No 214
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=94.80 E-value=0.038 Score=65.52 Aligned_cols=70 Identities=14% Similarity=0.188 Sum_probs=52.1
Q ss_pred CCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc
Q psy7557 617 TTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693 (936)
Q Consensus 617 ~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 693 (936)
..+++-|.+|+.. .+..+++.|+.|||||.+..--+. ++.... ..+..++|++++|+..|.++.+++.++
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~-~l~~~~----~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIA-WLMSVE----NCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHH-HHHHTS----CCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHH-HHHHhC----CCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 4689999999973 357899999999999986443232 232211 112357999999999999999999876
No 215
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.69 E-value=0.014 Score=54.48 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=16.2
Q ss_pred cCCcEEEEecCCCCcchh
Q psy7557 112 SGHDMIGIAQTGTGKTFA 129 (936)
Q Consensus 112 ~g~d~l~~apTGsGKT~~ 129 (936)
.|+.+++.||+|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 678899999999999974
No 216
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.52 E-value=0.022 Score=52.97 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=16.1
Q ss_pred cCCcEEEEecCCCCcchh
Q psy7557 632 SGHDMIGIAQTGTGKTFA 649 (936)
Q Consensus 632 ~g~d~i~~apTGsGKTl~ 649 (936)
.|..+++.+|+|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 678899999999999974
No 217
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.25 E-value=0.081 Score=51.34 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=26.8
Q ss_pred CCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCH
Q psy7557 633 GHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTR 680 (936)
Q Consensus 633 g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~ 680 (936)
|+=.++.+|.|||||.+.+--+.... ..+.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~---------~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAK---------IAKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH---------HTTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH---------HCCCEEEEEEecc
Confidence 45567889999999986553333222 3577899999973
No 218
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.24 E-value=0.14 Score=52.93 Aligned_cols=18 Identities=17% Similarity=0.032 Sum_probs=15.4
Q ss_pred CcEEEEecCCCCcchhch
Q psy7557 114 HDMIGIAQTGTGKTFAFL 131 (936)
Q Consensus 114 ~d~l~~apTGsGKT~~~~ 131 (936)
+.++++||+|+|||..+-
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 579999999999998643
No 219
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.16 E-value=0.1 Score=50.57 Aligned_cols=39 Identities=15% Similarity=0.153 Sum_probs=26.4
Q ss_pred CCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcH
Q psy7557 113 GHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTR 160 (936)
Q Consensus 113 g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~ 160 (936)
|+=.+++||.|||||.+.+--+. ... ..+.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~-r~~--------~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIR-RAK--------IAKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH-HHH--------HTTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHH-HHH--------HCCCEEEEEEecc
Confidence 44457789999999987554333 222 3467899998873
No 220
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.07 E-value=0.13 Score=56.71 Aligned_cols=54 Identities=11% Similarity=0.276 Sum_probs=37.7
Q ss_pred CCceEEEEccchhhh---cCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHh
Q psy7557 222 KAVSFVVLDEADRML---DLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKY 275 (936)
Q Consensus 222 ~~~~~lViDEah~l~---~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~ 275 (936)
.+.+++|+|++-++. +..+...+..+.....++.-++.++|+...+....+..|
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f 234 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRF 234 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHH
Confidence 478899999998654 334556666776667777777888888765555555444
No 221
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.97 E-value=0.079 Score=53.52 Aligned_cols=19 Identities=11% Similarity=0.104 Sum_probs=16.2
Q ss_pred cCCcEEEEecCCCCcchhc
Q psy7557 112 SGHDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 112 ~g~d~l~~apTGsGKT~~~ 130 (936)
.++.++++||+|+|||..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4578999999999999854
No 222
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.85 E-value=0.096 Score=52.15 Aligned_cols=90 Identities=17% Similarity=0.165 Sum_probs=50.7
Q ss_pred cCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc-cCCCCEEEEEECCccch
Q psy7557 632 SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKELE 710 (936)
Q Consensus 632 ~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~-~~~~~~~~~~~gg~~~~ 710 (936)
.|.=+++.+++|+|||.+.+-.+.... ..+.+++++.|...= +-...+ ...+ ...
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~---------~~g~kVli~~~~~d~-----r~~~~i~srlG---------~~~- 66 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLE---------YADVKYLVFKPKIDT-----RSIRNIQSRTG---------TSL- 66 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHH---------HTTCCEEEEEECCCG-----GGCSSCCCCCC---------CSS-
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHH---------hcCCEEEEEEeccCc-----hHHHHHHHhcC---------CCc-
Confidence 355677889999999986543333222 346688999886421 000011 0111 111
Q ss_pred HHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchh
Q psy7557 711 PQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRM 755 (936)
Q Consensus 711 ~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l 755 (936)
..+-+.+.+.+...+.... .-.+.++|||||++.+
T Consensus 67 ---------~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 67 ---------PSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFF 101 (223)
T ss_dssp ---------CCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGS
T ss_pred ---------cccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccC
Confidence 1233556666666665432 2345789999999964
No 223
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.82 E-value=0.19 Score=51.90 Aligned_cols=18 Identities=17% Similarity=0.032 Sum_probs=15.4
Q ss_pred CcEEEEecCCCCcchhhH
Q psy7557 634 HDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 634 ~d~i~~apTGsGKTl~~~ 651 (936)
+.+++.+|+|+|||..+-
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 579999999999997543
No 224
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.76 E-value=0.043 Score=54.69 Aligned_cols=90 Identities=14% Similarity=0.156 Sum_probs=49.1
Q ss_pred cCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhc-cCCCCEEEEEeCCccch
Q psy7557 112 SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKEIE 190 (936)
Q Consensus 112 ~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~-~~~~~~~~~~~gg~~~~ 190 (936)
.|.=.++.||+|+|||.+.+--+. ... ..+.+++++.|...= +-...+ ...|+. .
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~-r~~--------~~g~kVli~~~~~d~-----r~~~~i~srlG~~---------~- 66 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLH-RLE--------YADVKYLVFKPKIDT-----RSIRNIQSRTGTS---------L- 66 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHH-HHH--------HTTCCEEEEEECCCG-----GGCSSCCCCCCCS---------S-
T ss_pred CcEEEEEECCCCCcHHHHHHHHHH-HHH--------hcCCEEEEEEeccCc-----hHHHHHHHhcCCC---------c-
Confidence 345567789999999987544333 322 346678888776420 000011 011110 0
Q ss_pred HHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhh
Q psy7557 191 PQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRM 235 (936)
Q Consensus 191 ~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l 235 (936)
..+-+.+.+.+.+.+... ..-.+.++|||||++.+
T Consensus 67 ---------~~~~~~~~~~i~~~i~~~-~~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 67 ---------PSVEVESAPEILNYIMSN-SFNDETKVIGIDEVQFF 101 (223)
T ss_dssp ---------CCEEESSTHHHHHHHHST-TSCTTCCEEEECSGGGS
T ss_pred ---------cccccCCHHHHHHHHHHH-hhCCCCCEEEEecCccC
Confidence 123345555565555432 22345899999999964
No 225
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=93.66 E-value=0.091 Score=62.82 Aligned_cols=70 Identities=17% Similarity=0.165 Sum_probs=52.1
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhc
Q psy7557 97 TTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 173 (936)
Q Consensus 97 ~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 173 (936)
..++|-|.+|+.. .+..++|.|+.|||||.+..-- +.++.... ......+|+++.|+..|.++.+++.++
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~r-i~~ll~~~----~~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHR-IAYLMAEK----HVAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHH-HHHHHHTT----CCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHH-HHHHHHhc----CCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 4689999999876 3568999999999999874332 23333211 012357999999999999999999874
No 226
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=93.36 E-value=0.066 Score=63.61 Aligned_cols=69 Identities=19% Similarity=0.159 Sum_probs=51.3
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhc
Q psy7557 98 TPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 173 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 173 (936)
.++|-|.+|+... +..++|.|+.|||||.+.+--+ .++.... ......+|+++.|+..|.++.+.+.+.
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri-~~ll~~~----~~~~~~IL~lTfT~~Aa~em~~Rl~~~ 70 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKI-AHLIRGC----GYQARHIAAVTFTNKAAREMKERVGQT 70 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHH-HHHHHHH----CCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHH-HHHHHhc----CCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 5799999999763 6789999999999998744322 2222210 012357999999999999999999875
No 227
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.34 E-value=0.22 Score=54.81 Aligned_cols=55 Identities=11% Similarity=0.263 Sum_probs=37.8
Q ss_pred CCceEEEEcccchhc---cCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhc
Q psy7557 742 KAVSFVVLDEADRML---DLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYM 796 (936)
Q Consensus 742 ~~i~~lViDEah~l~---~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~ 796 (936)
...+++|+|++-++. +..+...+..+.....+..-++.++|+...+....+..|.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~ 235 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFH 235 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHh
Confidence 567899999997643 2334556666666677777788888887666666655553
No 228
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=93.19 E-value=0.12 Score=61.67 Aligned_cols=70 Identities=17% Similarity=0.148 Sum_probs=51.6
Q ss_pred CCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc
Q psy7557 617 TTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693 (936)
Q Consensus 617 ~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 693 (936)
..++|-|.+|+.. .+..+++.|+.|||||.+..--+ .++.... .....++|+++.|+..|.++.+++..+
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri-~~ll~~~----~~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRI-AYLMAEK----HVAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHH-HHHHHTT----CCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHH-HHHHHhc----CCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 4689999999876 35789999999999998644322 2222211 013357999999999999999988775
No 229
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.08 E-value=0.21 Score=47.87 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=15.9
Q ss_pred CCcEEEEecCCCCcchhch
Q psy7557 113 GHDMIGIAQTGTGKTFAFL 131 (936)
Q Consensus 113 g~d~l~~apTGsGKT~~~~ 131 (936)
.+++++.||+|+|||..+.
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4689999999999998543
No 230
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=93.06 E-value=0.12 Score=65.64 Aligned_cols=70 Identities=20% Similarity=0.190 Sum_probs=52.8
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHh
Q psy7557 98 TPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK 172 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 172 (936)
++|+-|.++|..- +++++|.|.-|||||.+.+-=++..+..... .....+++++++|++.|.++.+.+..
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~---~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEEN---PIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSS---CCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCC---CCCccceEEEeccHHHHHHHHHHHHH
Confidence 6899999998764 7899999999999999754333333322110 11334799999999999999998877
No 231
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=93.02 E-value=0.087 Score=62.58 Aligned_cols=69 Identities=17% Similarity=0.109 Sum_probs=51.1
Q ss_pred CCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc
Q psy7557 618 TPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693 (936)
Q Consensus 618 ~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 693 (936)
.++|-|.+|+... +..+++.|+.|||||.+..--+...+.... ....++|+++.|+..|.++.+++...
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~-----~~~~~IL~lTfT~~Aa~em~~Rl~~~ 70 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCG-----YQARHIAAVTFTNKAAREMKERVGQT 70 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHC-----CCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcC-----CCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 4789999999763 678999999999999864432222221100 13457999999999999999999875
No 232
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=92.93 E-value=0.22 Score=52.99 Aligned_cols=19 Identities=26% Similarity=0.282 Sum_probs=15.9
Q ss_pred CCcEEEEecCCCCcchhhH
Q psy7557 633 GHDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 633 g~d~i~~apTGsGKTl~~~ 651 (936)
++.+++.||+|+|||..+-
T Consensus 37 ~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4689999999999997543
No 233
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=92.90 E-value=0.15 Score=54.36 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=15.6
Q ss_pred CCcEEEEecCCCCcchhc
Q psy7557 113 GHDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 113 g~d~l~~apTGsGKT~~~ 130 (936)
++.+++.||+|+|||..+
T Consensus 37 ~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 468999999999999864
No 234
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.86 E-value=0.69 Score=45.56 Aligned_cols=39 Identities=15% Similarity=0.249 Sum_probs=23.1
Q ss_pred CCceEEEEccchhhhcCCCHHHHHHHHhhcCCCCcEEEEE
Q psy7557 222 KAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTS 261 (936)
Q Consensus 222 ~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~S 261 (936)
..-.+|||||+|.+... ....+..++...+.+..+++.|
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~ 139 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSC 139 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 46789999999987532 2333444444444445555444
No 235
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.46 E-value=0.55 Score=45.81 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=15.5
Q ss_pred CcEEEEecCCCCcchhhH
Q psy7557 634 HDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 634 ~d~i~~apTGsGKTl~~~ 651 (936)
+.+++.+|+|+|||..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 789999999999997543
No 236
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=92.29 E-value=0.27 Score=53.67 Aligned_cols=19 Identities=32% Similarity=0.279 Sum_probs=16.0
Q ss_pred cCCcEEEEecCCCCcchhc
Q psy7557 112 SGHDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 112 ~g~d~l~~apTGsGKT~~~ 130 (936)
.++.++++||+|+|||..+
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 3468999999999999854
No 237
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=92.29 E-value=0.18 Score=64.18 Aligned_cols=70 Identities=20% Similarity=0.190 Sum_probs=52.3
Q ss_pred CCcHHHHHHHHhhhcCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHh
Q psy7557 618 TPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK 692 (936)
Q Consensus 618 ~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 692 (936)
.+|+-|.+++..- ++++++.|.-|||||.+.+-=++..+..... .....++|++++|+..|..+.+++..
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~---~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEEN---PIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSS---CCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCC---CCCccceEEEeccHHHHHHHHHHHHH
Confidence 6899999999764 7899999999999998754434433322110 11345799999999999999888866
No 238
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.25 E-value=0.36 Score=47.21 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=15.2
Q ss_pred CcEEEEecCCCCcchhc
Q psy7557 114 HDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 114 ~d~l~~apTGsGKT~~~ 130 (936)
+.++++||+|+|||..+
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 78999999999999864
No 239
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=92.25 E-value=0.22 Score=57.60 Aligned_cols=113 Identities=19% Similarity=0.186 Sum_probs=72.4
Q ss_pred CCcHHHHHHHHHHhc--CCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhccC
Q psy7557 98 TPSPIQAQAWPILMS--GHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDY 175 (936)
Q Consensus 98 ~~~~~Q~~ai~~~~~--g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 175 (936)
.+|.-|.+|+..+.. ..-.++.|+-|.|||.+..+.+ ..+. ..++|.+|+.+=+..+.+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~-a~~~-----------~~~~vtAP~~~a~~~l~~~~~~--- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLI-SRIA-----------GRAIVTAPAKASTDVLAQFAGE--- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHH-HHSS-----------SCEEEECSSCCSCHHHHHHHGG---
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHH-HHHH-----------hCcEEECCCHHHHHHHHHHhhC---
Confidence 689999999988875 2346888999999997654432 2221 1369999998765543333221
Q ss_pred CCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHHHHHHHhhcCCCC
Q psy7557 176 KGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNR 255 (936)
Q Consensus 176 ~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~ 255 (936)
.|-+..|..+.. .....++||||||=.+ -.+.+..++.. .
T Consensus 240 -------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaI----p~pll~~ll~~----~ 279 (671)
T 2zpa_A 240 -------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAI----PAPLLHQLVSR----F 279 (671)
T ss_dssp -------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGS----CHHHHHHHHTT----S
T ss_pred -------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcC----CHHHHHHHHhh----C
Confidence 122334543221 2346899999999866 35666666652 2
Q ss_pred cEEEEEeccc
Q psy7557 256 QTVMTSATWN 265 (936)
Q Consensus 256 q~~~~SAT~~ 265 (936)
..++||.|..
T Consensus 280 ~~v~~~tTv~ 289 (671)
T 2zpa_A 280 PRTLLTTTVQ 289 (671)
T ss_dssp SEEEEEEEBS
T ss_pred CeEEEEecCC
Confidence 3588888874
No 240
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=91.80 E-value=1.1 Score=42.79 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=15.5
Q ss_pred CCcEEEEecCCCCcchhc
Q psy7557 113 GHDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 113 g~d~l~~apTGsGKT~~~ 130 (936)
++.++++||+|+|||..+
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 367999999999999864
No 241
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=91.67 E-value=0.48 Score=45.26 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=15.8
Q ss_pred CCcEEEEecCCCCcchhhH
Q psy7557 633 GHDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 633 g~d~i~~apTGsGKTl~~~ 651 (936)
..++++.+|+|+|||..+.
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4689999999999997543
No 242
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=91.64 E-value=0.43 Score=53.11 Aligned_cols=19 Identities=21% Similarity=0.200 Sum_probs=15.8
Q ss_pred CCcEEEEecCCCCcchhch
Q psy7557 113 GHDMIGIAQTGTGKTFAFL 131 (936)
Q Consensus 113 g~d~l~~apTGsGKT~~~~ 131 (936)
++.+++.||+|+|||..+-
T Consensus 130 ~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp SCCEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3579999999999998543
No 243
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=91.62 E-value=0.38 Score=52.46 Aligned_cols=19 Identities=32% Similarity=0.279 Sum_probs=16.0
Q ss_pred cCCcEEEEecCCCCcchhh
Q psy7557 632 SGHDMIGIAQTGTGKTFAF 650 (936)
Q Consensus 632 ~g~d~i~~apTGsGKTl~~ 650 (936)
.++.+++.||+|+|||...
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 3468999999999999754
No 244
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=91.58 E-value=0.55 Score=50.14 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=24.6
Q ss_pred CcHHHHHHHHHHh----cCC---cEEEEecCCCCcchhchH
Q psy7557 99 PSPIQAQAWPILM----SGH---DMIGIAQTGTGKTFAFLL 132 (936)
Q Consensus 99 ~~~~Q~~ai~~~~----~g~---d~l~~apTGsGKT~~~~l 132 (936)
+.|+|..++..+. +|+ -+++.||.|+|||..+..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~ 43 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA 43 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH
Confidence 4577777776543 443 489999999999987553
No 245
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.56 E-value=0.34 Score=51.06 Aligned_cols=19 Identities=16% Similarity=0.343 Sum_probs=16.3
Q ss_pred CCcEEEEecCCCCcchhch
Q psy7557 113 GHDMIGIAQTGTGKTFAFL 131 (936)
Q Consensus 113 g~d~l~~apTGsGKT~~~~ 131 (936)
++++++.||+|+|||..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999998543
No 246
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.53 E-value=0.13 Score=51.81 Aligned_cols=19 Identities=11% Similarity=0.104 Sum_probs=16.2
Q ss_pred cCCcEEEEecCCCCcchhh
Q psy7557 632 SGHDMIGIAQTGTGKTFAF 650 (936)
Q Consensus 632 ~g~d~i~~apTGsGKTl~~ 650 (936)
.++.+++.||+|+|||..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3678999999999999754
No 247
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.44 E-value=0.29 Score=53.47 Aligned_cols=37 Identities=19% Similarity=0.139 Sum_probs=22.5
Q ss_pred EEEEcccchhccCCCHHH-HHHHhhhcCCCceEEEEEec
Q psy7557 746 FVVLDEADRMLDLGFEPQ-INKTSIYINPNRQTVMTSAT 783 (936)
Q Consensus 746 ~lViDEah~l~~~~~~~~-~~~i~~~~~~~~q~v~~SAT 783 (936)
+|||||+|.+........ +..+.... .+..+|+.|..
T Consensus 136 vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~ 173 (384)
T 2qby_B 136 IIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISND 173 (384)
T ss_dssp EEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSS
T ss_pred EEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECC
Confidence 899999999876532333 44444443 44555555444
No 248
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=91.29 E-value=0.24 Score=48.60 Aligned_cols=39 Identities=15% Similarity=0.072 Sum_probs=26.2
Q ss_pred CCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcH
Q psy7557 113 GHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTR 160 (936)
Q Consensus 113 g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~ 160 (936)
|+=.+++|+-|||||.+.+--+.... ..+.+++++.|..
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~---------~~g~kVli~k~~~ 66 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQ---------FAKQHAIVFKPCI 66 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH---------HTTCCEEEEECC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH---------HCCCEEEEEEecc
Confidence 33345678999999987555443332 4567899999875
No 249
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=91.23 E-value=0.63 Score=51.75 Aligned_cols=19 Identities=21% Similarity=0.200 Sum_probs=15.9
Q ss_pred CCcEEEEecCCCCcchhhH
Q psy7557 633 GHDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 633 g~d~i~~apTGsGKTl~~~ 651 (936)
++.+++.||+|+|||..+-
T Consensus 130 ~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp SCCEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4689999999999997543
No 250
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=91.19 E-value=0.52 Score=54.52 Aligned_cols=112 Identities=19% Similarity=0.189 Sum_probs=71.0
Q ss_pred CCcHHHHHHHHhhhc--CCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhccC
Q psy7557 618 TPSPIQAQAWPILMS--GHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDY 695 (936)
Q Consensus 618 ~p~~iQ~~ai~~~l~--g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 695 (936)
.+|.-|.+|+..++. ..-.++.|+-|.|||.+..+.+- .+. ..++|.+|+.+=+..+.+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a-~~~-----------~~~~vtAP~~~a~~~l~~~~~~--- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLIS-RIA-----------GRAIVTAPAKASTDVLAQFAGE--- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHH-HSS-----------SCEEEECSSCCSCHHHHHHHGG---
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHH-HHH-----------hCcEEECCCHHHHHHHHHHhhC---
Confidence 689999999988875 33478889999999976554432 221 1369999998865543333211
Q ss_pred CCCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHHHhhhcCCCc
Q psy7557 696 KGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNR 775 (936)
Q Consensus 696 ~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~~~~~ 775 (936)
.|-+..|..+.. .....++||||||=.+. .+.+..+... .
T Consensus 240 -------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp----~pll~~ll~~----~ 279 (671)
T 2zpa_A 240 -------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAIP----APLLHQLVSR----F 279 (671)
T ss_dssp -------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSC----HHHHHHHHTT----S
T ss_pred -------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcCC----HHHHHHHHhh----C
Confidence 133446654321 23458999999998652 4555555542 2
Q ss_pred eEEEEEecC
Q psy7557 776 QTVMTSATW 784 (936)
Q Consensus 776 q~v~~SAT~ 784 (936)
..++||.|.
T Consensus 280 ~~v~~~tTv 288 (671)
T 2zpa_A 280 PRTLLTTTV 288 (671)
T ss_dssp SEEEEEEEB
T ss_pred CeEEEEecC
Confidence 347777775
No 251
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=91.16 E-value=0.23 Score=47.78 Aligned_cols=38 Identities=16% Similarity=0.120 Sum_probs=24.9
Q ss_pred CCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCc
Q psy7557 113 GHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPT 159 (936)
Q Consensus 113 g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt 159 (936)
|+=.++.||.|||||.-.+- ++.... ..+.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~-~i~n~~--------~~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMR-RVRRFQ--------IAQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHH-HHHHHH--------HTTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHH-HHHHHH--------HcCCeEEEEccc
Confidence 45567889999999964333 332222 235678888886
No 252
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=91.10 E-value=0.45 Score=50.83 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=24.7
Q ss_pred CcHHHHHHHHhhh----cCC---cEEEEecCCCCcchhhH
Q psy7557 619 PSPIQAQAWPILM----SGH---DMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 619 p~~iQ~~ai~~~l----~g~---d~i~~apTGsGKTl~~~ 651 (936)
..|+|.+++..+. +|+ .+++.||.|+|||..+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 4678888876654 343 48999999999997654
No 253
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.10 E-value=1.7 Score=42.67 Aligned_cols=40 Identities=15% Similarity=0.240 Sum_probs=23.9
Q ss_pred CCceEEEEcccchhccCCCHHHHHHHhhhcCCCceEEEEEe
Q psy7557 742 KAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSA 782 (936)
Q Consensus 742 ~~i~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~v~~SA 782 (936)
..-.+|||||+|.+... ....+..+....+.+..+++.|.
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence 45679999999987542 22334444444445555555543
No 254
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.07 E-value=0.59 Score=51.44 Aligned_cols=53 Identities=17% Similarity=0.302 Sum_probs=31.5
Q ss_pred CceEEEEccchhhhc-CCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHh
Q psy7557 223 AVSFVVLDEADRMLD-LGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKY 275 (936)
Q Consensus 223 ~~~~lViDEah~l~~-~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~ 275 (936)
..+++|||.+=++.. ......+..+.....++.-++.++||...+....+..|
T Consensus 182 ~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f 235 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAF 235 (443)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHH
T ss_pred CCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHH
Confidence 467888888754421 12334455555555666667778888765555555444
No 255
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.03 E-value=0.33 Score=52.94 Aligned_cols=18 Identities=39% Similarity=0.457 Sum_probs=15.3
Q ss_pred CCcEEEEecCCCCcchhc
Q psy7557 113 GHDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 113 g~d~l~~apTGsGKT~~~ 130 (936)
++.+++.||+|+|||..+
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 357999999999999864
No 256
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=90.98 E-value=0.51 Score=49.03 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=16.2
Q ss_pred cCCcEEEEecCCCCcchhc
Q psy7557 112 SGHDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 112 ~g~d~l~~apTGsGKT~~~ 130 (936)
.++.+++.||+|+|||..+
T Consensus 50 ~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCSEEEEESSSSSSHHHHH
T ss_pred CCCeEEEECCCCCcHHHHH
Confidence 4578999999999999754
No 257
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=90.74 E-value=0.5 Score=46.75 Aligned_cols=39 Identities=15% Similarity=0.107 Sum_probs=27.4
Q ss_pred CCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcH
Q psy7557 113 GHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTR 160 (936)
Q Consensus 113 g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~ 160 (936)
|+=.+++|+-|||||.+.+--+.... ..+.+++++-|.+
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~---------~~g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQ---------IAQYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH---------TTTCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH---------HCCCeEEEEeecC
Confidence 45456778999999987655444332 4577899998874
No 258
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=90.55 E-value=0.21 Score=52.64 Aligned_cols=18 Identities=39% Similarity=0.325 Sum_probs=15.5
Q ss_pred CcEEEEecCCCCcchhch
Q psy7557 114 HDMIGIAQTGTGKTFAFL 131 (936)
Q Consensus 114 ~d~l~~apTGsGKT~~~~ 131 (936)
.++++.||+|+|||..+-
T Consensus 68 ~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 479999999999998653
No 259
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=90.12 E-value=0.38 Score=47.13 Aligned_cols=40 Identities=15% Similarity=0.092 Sum_probs=26.3
Q ss_pred CCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHH
Q psy7557 633 GHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRE 681 (936)
Q Consensus 633 g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~ 681 (936)
|+=.++.++-|||||.+.+--+.... ..+.+++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~---------~~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQ---------FAKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH---------HTTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH---------HCCCEEEEEEeccC
Confidence 44455778889999987554433332 45778999999753
No 260
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.11 E-value=0.81 Score=49.69 Aligned_cols=18 Identities=33% Similarity=0.386 Sum_probs=15.6
Q ss_pred CCcEEEEecCCCCcchhc
Q psy7557 113 GHDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 113 g~d~l~~apTGsGKT~~~ 130 (936)
++.+++.||+|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 568999999999999854
No 261
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=89.89 E-value=1 Score=44.50 Aligned_cols=39 Identities=15% Similarity=0.107 Sum_probs=27.7
Q ss_pred CCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCH
Q psy7557 633 GHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTR 680 (936)
Q Consensus 633 g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~ 680 (936)
|+=.++.++-|||||.+.+--+.... ..|.+++++-|..
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~---------~~g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQ---------IAQYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH---------TTTCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH---------HCCCeEEEEeecC
Confidence 55567778889999987554443332 4578899999875
No 262
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=89.67 E-value=0.85 Score=50.19 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=14.4
Q ss_pred CcEEEEecCCCCcchhhH
Q psy7557 634 HDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 634 ~d~i~~apTGsGKTl~~~ 651 (936)
.-+++++++|+|||....
T Consensus 101 ~vIlivG~~G~GKTTt~~ 118 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVA 118 (443)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECcCCCCHHHHHH
Confidence 457888999999998644
No 263
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=89.59 E-value=0.52 Score=51.43 Aligned_cols=16 Identities=31% Similarity=0.480 Sum_probs=14.3
Q ss_pred cEEEEecCCCCcchhc
Q psy7557 115 DMIGIAQTGTGKTFAF 130 (936)
Q Consensus 115 d~l~~apTGsGKT~~~ 130 (936)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999854
No 264
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=89.40 E-value=0.74 Score=44.31 Aligned_cols=38 Identities=18% Similarity=0.149 Sum_probs=25.6
Q ss_pred CCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecC
Q psy7557 633 GHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPT 679 (936)
Q Consensus 633 g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt 679 (936)
|+=.++.+|.|||||.- ++-.+.... ..+.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~-Ll~~i~n~~--------~~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTE-LMRRVRRFQ--------IAQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHH-HHHHHHHHH--------HTTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHH-HHHHHHHHH--------HcCCeEEEEccc
Confidence 56678899999999954 332332222 235789999886
No 265
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=89.22 E-value=0.75 Score=50.10 Aligned_cols=16 Identities=31% Similarity=0.480 Sum_probs=14.3
Q ss_pred cEEEEecCCCCcchhh
Q psy7557 635 DMIGIAQTGTGKTFAF 650 (936)
Q Consensus 635 d~i~~apTGsGKTl~~ 650 (936)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999754
No 266
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=89.08 E-value=0.34 Score=51.05 Aligned_cols=19 Identities=37% Similarity=0.289 Sum_probs=15.9
Q ss_pred CCcEEEEecCCCCcchhhH
Q psy7557 633 GHDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 633 g~d~i~~apTGsGKTl~~~ 651 (936)
+.++++.||+|+|||..+-
T Consensus 67 ~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3579999999999997654
No 267
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=88.85 E-value=0.9 Score=47.76 Aligned_cols=19 Identities=16% Similarity=0.343 Sum_probs=16.2
Q ss_pred CCcEEEEecCCCCcchhhH
Q psy7557 633 GHDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 633 g~d~i~~apTGsGKTl~~~ 651 (936)
++++++.||+|+|||..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5799999999999997543
No 268
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=88.83 E-value=0.56 Score=45.86 Aligned_cols=41 Identities=22% Similarity=0.149 Sum_probs=26.2
Q ss_pred cCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHH
Q psy7557 632 SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRE 681 (936)
Q Consensus 632 ~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~ 681 (936)
.|.=.++.+|-|||||...+-- +.... ..+.+++++.|...
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~-~~r~~--------~~g~kvli~kp~~D 67 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRR-LRRGI--------YAKQKVVVFKPAID 67 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHH-HHHHH--------HTTCCEEEEEEC--
T ss_pred CceEEEEECCCCCCHHHHHHHH-HHHHH--------HcCCceEEEEeccC
Confidence 3455678899999999754333 32221 34678999999653
No 269
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=88.54 E-value=1.4 Score=42.44 Aligned_cols=140 Identities=18% Similarity=0.144 Sum_probs=70.3
Q ss_pred CcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHH-HHHHHHHHHHhccCCCCEEEEEECCccchHH
Q psy7557 634 HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRE-LATQIEREVNKIDYKGLKAVCVYGGKELEPQ 712 (936)
Q Consensus 634 ~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~-La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~ 712 (936)
..+++..++|.|||.+++--+++.+ +.|.+|+|+.=.+. .-.-=.+.+.++ ++.....--|.....+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~---------g~G~rV~~vQF~Kg~~~~gE~~~l~~L---~v~~~~~g~gf~~~~~ 96 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAV---------GHGKNVGVVQFIKGTWPNGERNLLEPH---GVEFQVMATGFTWETQ 96 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHH---------HTTCCEEEEESSCCSSCCHHHHHHGGG---TCEEEECCTTCCCCGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH---------HCCCeEEEEEeeCCCCCccHHHHHHhC---CcEEEEcccccccCCC
Confidence 4799999999999998877666655 45788888843321 000001122333 1222111111111110
Q ss_pred H-HHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCH--HHHHHHhhhcCCCceEEEEEecCChHHH
Q psy7557 713 L-EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFE--PQINKTSIYINPNRQTVMTSATWNKDVQ 789 (936)
Q Consensus 713 ~-~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~--~~~~~i~~~~~~~~q~v~~SAT~~~~~~ 789 (936)
. ..-...+ -+.|..... .+.-..+++||+||.-..+..++. +.+..++...+...-+|+.+--.|+.+.
T Consensus 97 ~~~~~~~~a------~~~l~~a~~--~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~ 168 (196)
T 1g5t_A 97 NREADTAAC------MAVWQHGKR--MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDIL 168 (196)
T ss_dssp GHHHHHHHH------HHHHHHHHH--HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHH
T ss_pred CcHHHHHHH------HHHHHHHHH--HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHH
Confidence 0 0000000 111222211 122356899999999776555532 3444455555555566666656666666
Q ss_pred HHHH
Q psy7557 790 RVAK 793 (936)
Q Consensus 790 ~~~~ 793 (936)
+.+.
T Consensus 169 e~AD 172 (196)
T 1g5t_A 169 DLAD 172 (196)
T ss_dssp HHCS
T ss_pred HhCc
Confidence 5543
No 270
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=88.54 E-value=0.79 Score=44.16 Aligned_cols=140 Identities=19% Similarity=0.161 Sum_probs=70.5
Q ss_pred CcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHH-HHHHHHHHHHhccCCCCEEEEEeCCccchHH
Q psy7557 114 HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRE-LATQIEREVNKIDYKGLKAVCVYGGKEIEPQ 192 (936)
Q Consensus 114 ~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~-La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~ 192 (936)
-.+++..++|.|||.+++--++..+ ..|.+|+|+.=.+. ...-=.+.++++ ++.....-.|-....+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~---------g~G~rV~~vQF~Kg~~~~gE~~~l~~L---~v~~~~~g~gf~~~~~ 96 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAV---------GHGKNVGVVQFIKGTWPNGERNLLEPH---GVEFQVMATGFTWETQ 96 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHH---------HTTCCEEEEESSCCSSCCHHHHHHGGG---TCEEEECCTTCCCCGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH---------HCCCeEEEEEeeCCCCCccHHHHHHhC---CcEEEEcccccccCCC
Confidence 4788889999999999877666655 45778888843221 000001223333 2222211111111000
Q ss_pred H-HHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCC--HHHHHHHHhhcCCCCcEEEEEeccchHHH
Q psy7557 193 L-EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGF--EPQINKTSIYINPNRQTVMTSATWNKDVQ 269 (936)
Q Consensus 193 ~-~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~--~~~~~~i~~~~~~~~q~~~~SAT~~~~~~ 269 (936)
. ....... -+.| ....+ .+.-.++++||+||+-..+..++ .+.+..++...+...-+|+.+--.|+.+.
T Consensus 97 ~~~~~~~~a------~~~l-~~a~~-~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~ 168 (196)
T 1g5t_A 97 NREADTAAC------MAVW-QHGKR-MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDIL 168 (196)
T ss_dssp GHHHHHHHH------HHHH-HHHHH-HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHH
T ss_pred CcHHHHHHH------HHHH-HHHHH-HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHH
Confidence 0 0000000 0111 11111 12236789999999987666553 34555566655555566666666666666
Q ss_pred HHHH
Q psy7557 270 RVAK 273 (936)
Q Consensus 270 ~~~~ 273 (936)
+.+.
T Consensus 169 e~AD 172 (196)
T 1g5t_A 169 DLAD 172 (196)
T ss_dssp HHCS
T ss_pred HhCc
Confidence 5554
No 271
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=88.50 E-value=1.5 Score=47.60 Aligned_cols=18 Identities=33% Similarity=0.386 Sum_probs=15.6
Q ss_pred CCcEEEEecCCCCcchhh
Q psy7557 633 GHDMIGIAQTGTGKTFAF 650 (936)
Q Consensus 633 g~d~i~~apTGsGKTl~~ 650 (936)
+..+++.||+|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 568999999999999754
No 272
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=88.00 E-value=0.71 Score=45.10 Aligned_cols=39 Identities=21% Similarity=0.118 Sum_probs=25.7
Q ss_pred CCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcH
Q psy7557 113 GHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTR 160 (936)
Q Consensus 113 g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~ 160 (936)
|.=.++++|-|||||...+- .+.... ..+.+++++.|..
T Consensus 28 G~I~vitG~M~sGKTT~Llr-~~~r~~--------~~g~kvli~kp~~ 66 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIR-RLRRGI--------YAKQKVVVFKPAI 66 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHH-HHHHHH--------HTTCCEEEEEEC-
T ss_pred ceEEEEECCCCCCHHHHHHH-HHHHHH--------HcCCceEEEEecc
Confidence 44457789999999976443 333332 3466789999864
No 273
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=87.72 E-value=1.1 Score=46.25 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=16.2
Q ss_pred cCCcEEEEecCCCCcchhh
Q psy7557 632 SGHDMIGIAQTGTGKTFAF 650 (936)
Q Consensus 632 ~g~d~i~~apTGsGKTl~~ 650 (936)
.++.+++.||+|+|||..+
T Consensus 50 ~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCSEEEEESSSSSSHHHHH
T ss_pred CCCeEEEECCCCCcHHHHH
Confidence 4578999999999999754
No 274
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=87.52 E-value=1.4 Score=46.75 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=15.8
Q ss_pred CCcEEEEecCCCCcchhhH
Q psy7557 633 GHDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 633 g~d~i~~apTGsGKTl~~~ 651 (936)
.+.+++.+|+|+|||..+-
T Consensus 51 ~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCEEEEECSSSSCHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 3579999999999997543
No 275
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=87.37 E-value=0.54 Score=49.88 Aligned_cols=40 Identities=18% Similarity=0.125 Sum_probs=24.0
Q ss_pred CCceEEEEccchhhhcCCCHHHHHHHHhhcCCCCcEEEEE
Q psy7557 222 KAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTS 261 (936)
Q Consensus 222 ~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~S 261 (936)
...++++|||+|.+........+..++...+.+.++++.+
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 4678999999999862222334444444444455555533
No 276
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=87.31 E-value=2.6 Score=44.56 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=15.1
Q ss_pred CcEEEEecCCCCcchhc
Q psy7557 114 HDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 114 ~d~l~~apTGsGKT~~~ 130 (936)
+.+++.||+|+|||..+
T Consensus 52 ~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CEEEEECSSSSCHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 57999999999999864
No 277
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=87.15 E-value=0.46 Score=50.49 Aligned_cols=41 Identities=17% Similarity=0.120 Sum_probs=24.4
Q ss_pred CCceEEEEcccchhccCCCHHHHHHHhhhcCCCceEEEEEe
Q psy7557 742 KAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSA 782 (936)
Q Consensus 742 ~~i~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~v~~SA 782 (936)
...++++|||+|.+........+...+...+.+.++++.+.
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n 144 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITAN 144 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEES
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 46789999999998622223334444444445566666443
No 278
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=86.58 E-value=1.3 Score=47.20 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=15.1
Q ss_pred CcEEEEecCCCCcchhc
Q psy7557 114 HDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 114 ~d~l~~apTGsGKT~~~ 130 (936)
.++++.||+|+|||..+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 58999999999999854
No 279
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=86.42 E-value=1.3 Score=46.66 Aligned_cols=38 Identities=18% Similarity=0.343 Sum_probs=22.4
Q ss_pred CCceEEEEccchhhhcCCCHHHHHHHHhhcCCCCcEEEE
Q psy7557 222 KAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMT 260 (936)
Q Consensus 222 ~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~ 260 (936)
..-.++||||+|.+.... ...+..++...+.+..+++.
T Consensus 109 ~~~~vliiDe~~~l~~~~-~~~L~~~le~~~~~~~~i~~ 146 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDA-QQALRRTMEMFSSNVRFILS 146 (327)
T ss_dssp CSCEEEEEETGGGSCHHH-HHHHHHHHHHTTTTEEEEEE
T ss_pred CCCeEEEEeCCCcCCHHH-HHHHHHHHHhcCCCCeEEEE
Confidence 467899999999875322 23344444444444555443
No 280
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.39 E-value=1.4 Score=50.07 Aligned_cols=41 Identities=12% Similarity=0.059 Sum_probs=24.6
Q ss_pred CCceEEEEccchhhhcCC--CHHHHHHHHhhcCCCCcEEEEEecc
Q psy7557 222 KAVSFVVLDEADRMLDLG--FEPQINKTSIYINPNRQTVMTSATW 264 (936)
Q Consensus 222 ~~~~~lViDEah~l~~~~--~~~~~~~i~~~~~~~~q~~~~SAT~ 264 (936)
..-.+|||||+|.+.... ....+..++.. ....+++.+++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCC
Confidence 456799999999986532 22334444332 345567766653
No 281
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=85.86 E-value=1.5 Score=46.59 Aligned_cols=18 Identities=22% Similarity=0.167 Sum_probs=15.4
Q ss_pred CcEEEEecCCCCcchhhH
Q psy7557 634 HDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 634 ~d~i~~apTGsGKTl~~~ 651 (936)
.++++.||+|+|||..+-
T Consensus 56 ~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 589999999999997543
No 282
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=84.89 E-value=1.5 Score=44.00 Aligned_cols=52 Identities=17% Similarity=0.161 Sum_probs=30.3
Q ss_pred cCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhc
Q psy7557 112 SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 173 (936)
Q Consensus 112 ~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 173 (936)
.|.-+++.||+|+|||..++--+. ... ..+..++|+.-. +-..++.+.+..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~-~~~--------~~~~~v~~~~~e-~~~~~~~~~~~~~ 73 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLW-NGL--------KMGEPGIYVALE-EHPVQVRQNMAQF 73 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHH-HHH--------HTTCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH-HHH--------hcCCeEEEEEcc-CCHHHHHHHHHHc
Confidence 467789999999999986443222 222 123456666533 2345555555543
No 283
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=84.86 E-value=5.9 Score=39.13 Aligned_cols=16 Identities=25% Similarity=0.181 Sum_probs=13.9
Q ss_pred cEEEEecCCCCcchhc
Q psy7557 115 DMIGIAQTGTGKTFAF 130 (936)
Q Consensus 115 d~l~~apTGsGKT~~~ 130 (936)
.+++.||+|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999754
No 284
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=83.98 E-value=0.62 Score=42.60 Aligned_cols=21 Identities=5% Similarity=-0.088 Sum_probs=17.4
Q ss_pred HhcCCcEEEEecCCCCcchhc
Q psy7557 110 LMSGHDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 110 ~~~g~d~l~~apTGsGKT~~~ 130 (936)
+..+.++++.||+|+|||..+
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHH
T ss_pred hCCCCcEEEECCCCccHHHHH
Confidence 346689999999999999753
No 285
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=83.95 E-value=6.8 Score=38.65 Aligned_cols=16 Identities=25% Similarity=0.181 Sum_probs=14.0
Q ss_pred cEEEEecCCCCcchhh
Q psy7557 635 DMIGIAQTGTGKTFAF 650 (936)
Q Consensus 635 d~i~~apTGsGKTl~~ 650 (936)
.+++.||+|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999754
No 286
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=83.57 E-value=5.1 Score=44.45 Aligned_cols=40 Identities=25% Similarity=0.188 Sum_probs=24.4
Q ss_pred cCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecC
Q psy7557 632 SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPT 679 (936)
Q Consensus 632 ~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt 679 (936)
.|.-+++.|++|+|||...+ -+...... ..+..++|+..-
T Consensus 199 ~G~l~ii~G~pg~GKT~lal-~ia~~~a~-------~~g~~vl~~slE 238 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFAL-TIAQNAAL-------KEGVGVGIYSLE 238 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHH-HHHHHHHH-------TTCCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHH-HHHHHHHH-------hCCCeEEEEECC
Confidence 45668888999999996433 23323221 124567887653
No 287
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=83.38 E-value=5.5 Score=44.18 Aligned_cols=39 Identities=26% Similarity=0.181 Sum_probs=23.2
Q ss_pred cCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcC
Q psy7557 112 SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAP 158 (936)
Q Consensus 112 ~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~P 158 (936)
.|.=+++.|++|+|||..++- +...... ..+..++|+..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~-ia~~~a~-------~~g~~vl~~sl 237 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALT-IAQNAAL-------KEGVGVGIYSL 237 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHH-HHHHHHH-------TTCCCEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHH-HHHHHHH-------hCCCeEEEEEC
Confidence 345577889999999975433 3333321 12445777654
No 288
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=83.20 E-value=2.6 Score=44.11 Aligned_cols=17 Identities=6% Similarity=-0.185 Sum_probs=14.4
Q ss_pred cEEEEecCCCCcchhch
Q psy7557 115 DMIGIAQTGTGKTFAFL 131 (936)
Q Consensus 115 d~l~~apTGsGKT~~~~ 131 (936)
..++.||.|+|||.++.
T Consensus 20 ~~Lf~Gp~G~GKtt~a~ 36 (305)
T 2gno_A 20 SILINGEDLSYPREVSL 36 (305)
T ss_dssp EEEEECSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68889999999997654
No 289
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=82.60 E-value=0.7 Score=42.35 Aligned_cols=22 Identities=14% Similarity=0.028 Sum_probs=18.0
Q ss_pred HhcCCcEEEEecCCCCcchhch
Q psy7557 110 LMSGHDMIGIAQTGTGKTFAFL 131 (936)
Q Consensus 110 ~~~g~d~l~~apTGsGKT~~~~ 131 (936)
...+.++++.||+|+|||..+-
T Consensus 21 a~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHHH
Confidence 3466799999999999998643
No 290
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.56 E-value=2.3 Score=48.39 Aligned_cols=41 Identities=12% Similarity=0.059 Sum_probs=24.7
Q ss_pred CCceEEEEcccchhccCC--CHHHHHHHhhhcCCCceEEEEEecC
Q psy7557 742 KAVSFVVLDEADRMLDLG--FEPQINKTSIYINPNRQTVMTSATW 784 (936)
Q Consensus 742 ~~i~~lViDEah~l~~~~--~~~~~~~i~~~~~~~~q~v~~SAT~ 784 (936)
..-.+|||||+|.+.... ....+..+... ...++++.+++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCC
Confidence 345789999999986532 22333333332 345677777764
No 291
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.14 E-value=1.4 Score=47.39 Aligned_cols=42 Identities=17% Similarity=0.240 Sum_probs=25.8
Q ss_pred CCCceEEEEccchhhhcCCCHHHHHHHHhhcCCCCcEEEEEec
Q psy7557 221 LKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSAT 263 (936)
Q Consensus 221 ~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT 263 (936)
..+.+++|+||+|. ++......+.+++...+++..+++.|-.
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~ 173 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDS 173 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESC
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCC
Confidence 34678999999998 4444445555555555555555555543
No 292
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=82.06 E-value=2.8 Score=44.15 Aligned_cols=39 Identities=18% Similarity=0.335 Sum_probs=23.4
Q ss_pred CCceEEEEcccchhccCCCHHHHHHHhhhcCCCceEEEEE
Q psy7557 742 KAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTS 781 (936)
Q Consensus 742 ~~i~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~v~~S 781 (936)
..-.++||||+|.+.... ...+...+...+.+..+++.+
T Consensus 109 ~~~~vliiDe~~~l~~~~-~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDA-QQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHHH-HHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHHH-HHHHHHHHHhcCCCCeEEEEe
Confidence 456899999999875432 233444444444555555544
No 293
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=81.95 E-value=1.5 Score=48.78 Aligned_cols=18 Identities=44% Similarity=0.407 Sum_probs=15.2
Q ss_pred CcEEEEecCCCCcchhch
Q psy7557 114 HDMIGIAQTGTGKTFAFL 131 (936)
Q Consensus 114 ~d~l~~apTGsGKT~~~~ 131 (936)
..+++.||+|+|||..+-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 479999999999998643
No 294
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=81.76 E-value=0.88 Score=41.58 Aligned_cols=21 Identities=5% Similarity=-0.088 Sum_probs=17.2
Q ss_pred hhcCCcEEEEecCCCCcchhh
Q psy7557 630 LMSGHDMIGIAQTGTGKTFAF 650 (936)
Q Consensus 630 ~l~g~d~i~~apTGsGKTl~~ 650 (936)
+..+.++++.+|+|+|||..+
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHH
T ss_pred hCCCCcEEEECCCCccHHHHH
Confidence 345679999999999999643
No 295
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.39 E-value=2.1 Score=45.85 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=26.2
Q ss_pred CCCceEEEEcccchhccCCCHHHHHHHhhhcCCCceEEEEEecC
Q psy7557 741 LKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 784 (936)
Q Consensus 741 ~~~i~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~v~~SAT~ 784 (936)
..+.+++|+||+|. ++......+..++...+++..+++.|...
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 34678999999998 44333445555555555566666665543
No 296
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=81.31 E-value=4 Score=45.23 Aligned_cols=18 Identities=44% Similarity=0.407 Sum_probs=15.3
Q ss_pred CcEEEEecCCCCcchhhH
Q psy7557 634 HDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 634 ~d~i~~apTGsGKTl~~~ 651 (936)
.++++.+|+|+|||..+-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 479999999999997544
No 297
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=80.82 E-value=2.1 Score=45.62 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=23.2
Q ss_pred CCceEEEEccchhhhcCCCHHHHHHHHhhcCCCCcEEEE
Q psy7557 222 KAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMT 260 (936)
Q Consensus 222 ~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~ 260 (936)
...+++|+||+|.|... ....+.+++...+....+++.
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~ 146 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVL 146 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEE
Confidence 45789999999987543 233444555544555555443
No 298
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=80.19 E-value=0.95 Score=41.44 Aligned_cols=21 Identities=14% Similarity=0.063 Sum_probs=17.6
Q ss_pred hcCCcEEEEecCCCCcchhhH
Q psy7557 631 MSGHDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 631 l~g~d~i~~apTGsGKTl~~~ 651 (936)
..+.++++.+|+|+|||..+-
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHH
Confidence 456799999999999997654
No 299
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=80.17 E-value=3.5 Score=45.91 Aligned_cols=40 Identities=18% Similarity=0.125 Sum_probs=24.5
Q ss_pred cCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecC
Q psy7557 632 SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPT 679 (936)
Q Consensus 632 ~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt 679 (936)
.|.-+++.|++|+|||...+- +...... ..|..++|+..-
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~-ia~~~~~-------~~g~~Vl~~s~E 241 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALN-IAQNVAT-------KTNENVAIFSLE 241 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHH-HHHHHHH-------HSSCCEEEEESS
T ss_pred CCCEEEEECCCCCCHHHHHHH-HHHHHHH-------hCCCcEEEEECC
Confidence 456788889999999974432 2222221 124467777643
No 300
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=79.37 E-value=3.6 Score=46.00 Aligned_cols=63 Identities=11% Similarity=0.037 Sum_probs=46.8
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCCCCCCCEEEE
Q psy7557 842 RDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVIN 916 (936)
Q Consensus 842 ~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gidip~v~~VI~ 916 (936)
+.++++.|.|...++.+...|...++.+..... . ..+..| .|.|+...+..|+.+|+..++|.
T Consensus 382 ~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~-~---------~~~~~g--~v~i~~g~L~~GF~~p~~klaVI 444 (483)
T 3hjh_A 382 DGPVVFSVESEGRREALGELLARIKIAPQRIMR-L---------DEASDR--GRYLMIGAAEHGFVDTVRNLALI 444 (483)
T ss_dssp CSCEEEEESCSSTTTTTHHHHGGGTCCCEECSC-G---------GGCCTT--CEEEEESCCCSCEEETTTTEEEE
T ss_pred CCeEEEEeCChHHHHHHHHHHHHcCCCceecCc-h---------hhcCCC--cEEEEEcccccCcccCCCCEEEE
Confidence 468999999999999999999988776543321 1 112333 56777788999999999888775
No 301
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=79.13 E-value=4.1 Score=42.51 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=23.0
Q ss_pred CCCceEEEEcccchhccCCCHHHHHHHhhhcCCCceEEEEE
Q psy7557 741 LKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTS 781 (936)
Q Consensus 741 ~~~i~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~v~~S 781 (936)
....+++||||||.|..... +.+.+.+..-++...+++.+
T Consensus 80 ~~~~kvviIdead~lt~~a~-naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQAA-NAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSSEEEEETTGGGBCHHHH-HHTHHHHHSCCTTEEEEEEE
T ss_pred cCCceEEEeccHHHhCHHHH-HHHHHHHhCCCCCeEEEEEE
Confidence 35678999999999864332 22333344333444444444
No 302
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=78.62 E-value=3 Score=43.75 Aligned_cols=38 Identities=21% Similarity=0.268 Sum_probs=22.2
Q ss_pred CceEEEEcccchhccCCCHHHHHHHhhhcCCCceEEEEE
Q psy7557 743 AVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTS 781 (936)
Q Consensus 743 ~i~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~v~~S 781 (936)
+-.++||||+|.+.... ...+.......+++..+++.|
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 46899999999875432 222333333344555665554
No 303
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=78.44 E-value=3.8 Score=45.73 Aligned_cols=53 Identities=15% Similarity=0.239 Sum_probs=39.4
Q ss_pred cCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhccCC
Q psy7557 112 SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYK 176 (936)
Q Consensus 112 ~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~ 176 (936)
.|....+.+-||||||++ ++.+..- .+..+|||+|+...|.|+++.++.|.+.
T Consensus 13 ~~~~~~l~g~~gs~ka~~--~a~l~~~----------~~~p~lvv~~~~~~A~~l~~~l~~~~~~ 65 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATL--VAEIAER----------HAGPVVLIAPDMQNALRLHDEISQFTDQ 65 (483)
T ss_dssp TTCEEEEECCCTTHHHHH--HHHHHHH----------SSSCEEEEESSHHHHHHHHHHHHHTCSS
T ss_pred CCCeEEEeCCCchHHHHH--HHHHHHH----------hCCCEEEEeCCHHHHHHHHHHHHhhCCC
Confidence 456788899999999974 2223211 1234899999999999999999987543
No 304
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=76.99 E-value=2.6 Score=46.14 Aligned_cols=17 Identities=41% Similarity=0.454 Sum_probs=14.1
Q ss_pred CcEEE--EecCCCCcchhc
Q psy7557 114 HDMIG--IAQTGTGKTFAF 130 (936)
Q Consensus 114 ~d~l~--~apTGsGKT~~~ 130 (936)
..+++ .||.|+|||...
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 46788 899999999854
No 305
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=76.55 E-value=4.6 Score=42.60 Aligned_cols=58 Identities=12% Similarity=0.082 Sum_probs=30.6
Q ss_pred CCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHH-HHHHHHHHHhc
Q psy7557 113 GHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTREL-ATQIEREVNKI 173 (936)
Q Consensus 113 g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~L-a~Q~~~~~~~~ 173 (936)
|.-+++.||+|+|||..++--+. ..... .. ....+..++|+.-...+ ..++.+.++.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~-~~~~~-~~-~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSV-NVQLP-PE-KGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH-HTTSC-GG-GTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHH-HHhcc-cc-cCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 46788899999999985443222 22110 00 00114577777654322 34444445544
No 306
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=76.40 E-value=5.7 Score=39.53 Aligned_cols=20 Identities=25% Similarity=0.102 Sum_probs=16.5
Q ss_pred cCCcEEEEecCCCCcchhhH
Q psy7557 632 SGHDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 632 ~g~d~i~~apTGsGKTl~~~ 651 (936)
.|.-+.+.+|+|+|||..+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHH
Confidence 56778999999999997544
No 307
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=76.28 E-value=4.4 Score=45.10 Aligned_cols=21 Identities=29% Similarity=0.158 Sum_probs=15.9
Q ss_pred cCCcEEEEecCCCCcchhchH
Q psy7557 112 SGHDMIGIAQTGTGKTFAFLL 132 (936)
Q Consensus 112 ~g~d~l~~apTGsGKT~~~~l 132 (936)
.|.=+++.|++|+|||..++-
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ 222 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALN 222 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 445678889999999975443
No 308
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=73.36 E-value=3.5 Score=45.07 Aligned_cols=17 Identities=41% Similarity=0.454 Sum_probs=14.0
Q ss_pred CcEEE--EecCCCCcchhh
Q psy7557 634 HDMIG--IAQTGTGKTFAF 650 (936)
Q Consensus 634 ~d~i~--~apTGsGKTl~~ 650 (936)
..+++ .||.|+|||...
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 46788 899999999754
No 309
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=72.41 E-value=2.6 Score=42.96 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=16.8
Q ss_pred hcCCcEEEEecCCCCcchhc
Q psy7557 111 MSGHDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 111 ~~g~d~l~~apTGsGKT~~~ 130 (936)
..+..+++.||+|+|||..+
T Consensus 27 ~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHH
Confidence 35678999999999999754
No 310
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=72.01 E-value=2.3 Score=47.15 Aligned_cols=44 Identities=16% Similarity=0.287 Sum_probs=31.3
Q ss_pred cCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHH
Q psy7557 632 SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELAT 684 (936)
Q Consensus 632 ~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~ 684 (936)
...++++.|+||||||... -+++..+. ..+..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~--------~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGL--------LRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHH--------HTTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHH--------HCCCcEEEEeCCCchhH
Confidence 3479999999999999864 23333332 23567888999888853
No 311
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=72.01 E-value=3.5 Score=53.82 Aligned_cols=43 Identities=19% Similarity=0.152 Sum_probs=31.1
Q ss_pred cCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHH
Q psy7557 632 SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELA 683 (936)
Q Consensus 632 ~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La 683 (936)
.|+=+=+.+|-+||||..++-.+.+.. ..|..+.||=+-.+|-
T Consensus 1774 ~g~~~e~~~~~~~g~~~~~~~~~~~~~---------~~~~~~~~~d~~~~~~ 1816 (2050)
T 3cmu_A 1774 MGRIVEIYGPESSGKTTLTLQVIAAAQ---------REGKTCAFIDAEHALD 1816 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH---------TTTCCEEEECTTSCCC
T ss_pred CCcEEEEECCCCcCHHHHHHHHHHHHh---------hcCCEEEEEcCccccC
Confidence 577888899999999986554333222 4577888888877773
No 312
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=71.76 E-value=2 Score=40.44 Aligned_cols=60 Identities=15% Similarity=0.117 Sum_probs=41.2
Q ss_pred CcHHHHHHHHHHhcCC--cEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHH
Q psy7557 99 PSPIQAQAWPILMSGH--DMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQI 166 (936)
Q Consensus 99 ~~~~Q~~ai~~~~~g~--d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~ 166 (936)
..+-|..|+..++..+ =.++.++-|++||...+-.++ ... +..|..+.+|+|+..-+...
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~-~~a-------~~~Gr~V~vLAp~~~s~~~l 96 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELV-MMA-------REQGREVQIIAADRRSQMNM 96 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHH-HHH-------HHTTCCEEEECSTTHHHHHH
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHH-HHH-------HhcCeEEEEEcCchHHHHHH
Confidence 3567899999887544 345569999999987433222 221 25688999999997765543
No 313
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=71.33 E-value=3.4 Score=46.57 Aligned_cols=40 Identities=15% Similarity=0.014 Sum_probs=27.2
Q ss_pred HHHHHhCCCCCCcHHHHHHHHH-HhcCCcEEEEecCCCCcchh
Q psy7557 88 LRQLENLSFTTPSPIQAQAWPI-LMSGHDMIGIAQTGTGKTFA 129 (936)
Q Consensus 88 ~~~l~~~g~~~~~~~Q~~ai~~-~~~g~d~l~~apTGsGKT~~ 129 (936)
+..+.+.|. +++.+..-+.. +..|..++++||||||||..
T Consensus 236 ~~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 236 PIDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 445556663 34444444443 45788999999999999974
No 314
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=71.09 E-value=2.2 Score=47.40 Aligned_cols=43 Identities=16% Similarity=0.282 Sum_probs=30.7
Q ss_pred cCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHH
Q psy7557 112 SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELA 163 (936)
Q Consensus 112 ~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La 163 (936)
...+++++|+||||||... -+++..+. ..+..++|+=|-.++.
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~--------~~g~~viv~Dpkge~~ 94 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGL--------LRGDRMVIVDPNGDML 94 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHH--------HTTCEEEEEEETTHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHH--------HCCCcEEEEeCCCchh
Confidence 3478999999999999974 33333332 2356788888988874
No 315
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=70.39 E-value=4.1 Score=49.49 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=15.8
Q ss_pred CCcEEEEecCCCCcchhch
Q psy7557 113 GHDMIGIAQTGTGKTFAFL 131 (936)
Q Consensus 113 g~d~l~~apTGsGKT~~~~ 131 (936)
.++++++||+|+|||..+-
T Consensus 191 ~~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CCCCEEEECTTSCHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHH
Confidence 3589999999999998543
No 316
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=69.87 E-value=3.4 Score=43.73 Aligned_cols=49 Identities=20% Similarity=0.165 Sum_probs=28.5
Q ss_pred cCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHH
Q psy7557 632 SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREV 690 (936)
Q Consensus 632 ~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~ 690 (936)
.|.=+++.|++|+|||..++ -+...... .+..++|++.--. ..|+..++
T Consensus 45 ~G~LiiIaG~pG~GKTt~al-~ia~~~a~--------~g~~Vl~fSlEms-~~ql~~Rl 93 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMM-NMVLSALN--------DDRGVAVFSLEMS-AEQLALRA 93 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHH-HHHHHHHH--------TTCEEEEEESSSC-HHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHH-HHHHHHHH--------cCCeEEEEeCCCC-HHHHHHHH
Confidence 45668888999999997433 23222221 3567888865322 33444443
No 317
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=69.35 E-value=4.4 Score=44.36 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=19.3
Q ss_pred HHHHHHHhhh--cCCcEEEEecCCCCcchh
Q psy7557 622 IQAQAWPILM--SGHDMIGIAQTGTGKTFA 649 (936)
Q Consensus 622 iQ~~ai~~~l--~g~d~i~~apTGsGKTl~ 649 (936)
-+..++..++ .|.-+++.+|||||||..
T Consensus 154 ~~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 154 HNHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 3444555444 345688999999999974
No 318
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=68.68 E-value=14 Score=38.85 Aligned_cols=54 Identities=17% Similarity=0.258 Sum_probs=35.1
Q ss_pred CceEEEEccchhhh-cCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhc
Q psy7557 223 AVSFVVLDEADRML-DLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYM 276 (936)
Q Consensus 223 ~~~~lViDEah~l~-~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~ 276 (936)
..+++++|.+-+.. +......+..+...+.++..++.+.++...+....++.+.
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~ 265 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFN 265 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHH
Confidence 34567788776543 2334455555656666777888888888777766666553
No 319
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=68.28 E-value=4.1 Score=45.95 Aligned_cols=39 Identities=15% Similarity=0.034 Sum_probs=25.3
Q ss_pred HHHHhCCCCCCcHHHHHHHHh-hhcCCcEEEEecCCCCcchh
Q psy7557 609 RQLENLSFTTPSPIQAQAWPI-LMSGHDMIGIAQTGTGKTFA 649 (936)
Q Consensus 609 ~~l~~~g~~~p~~iQ~~ai~~-~l~g~d~i~~apTGsGKTl~ 649 (936)
..|.+.|. +++.+..-+.. +..|..+++++|||||||..
T Consensus 237 ~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 237 IDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 34445553 23444444443 34788999999999999974
No 320
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=67.88 E-value=3.1 Score=45.56 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=19.8
Q ss_pred HHHHHHHHHHh--cCCcEEEEecCCCCcchh
Q psy7557 101 PIQAQAWPILM--SGHDMIGIAQTGTGKTFA 129 (936)
Q Consensus 101 ~~Q~~ai~~~~--~g~d~l~~apTGsGKT~~ 129 (936)
+-+..++..++ .|.-++++||||||||..
T Consensus 153 ~~~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 153 AHNHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 34455555444 344578899999999984
No 321
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.73 E-value=1.4 Score=48.28 Aligned_cols=56 Identities=13% Similarity=0.223 Sum_probs=31.5
Q ss_pred CCcccChHHhhcCCHHHHHHHHhC---CCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhc
Q psy7557 71 PNPVTSFKQAFQHYPEILRQLENL---SFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 71 p~p~~~f~~~~~~~~~l~~~l~~~---g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~ 130 (936)
..|-.+|++. +-.+...+.|... -+..|--++...+ .--+.+|+.||+|+|||+.+
T Consensus 174 ~~p~~t~~di-gGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 174 EKPTETYSDV-GGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SSCSCCGGGS-CSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHHH
T ss_pred CCCCCChHhc-CcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHHH
Confidence 3566789885 4444455444431 1122322222211 12378999999999999853
No 322
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=66.93 E-value=7.9 Score=40.26 Aligned_cols=90 Identities=10% Similarity=0.046 Sum_probs=49.7
Q ss_pred cEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhccCCCCEEEEEECCccchHHHH
Q psy7557 635 DMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLE 714 (936)
Q Consensus 635 d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 714 (936)
-+++.+|+|+|||...+- ++..... ...+.+++|+..-..+.. . .+++++.. .
T Consensus 30 iteI~G~pGsGKTtL~Lq-~~~~~~~------~g~g~~vlyId~E~s~~~-~--ra~~lGvd------------~----- 82 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLT-MVSSYMR------QYPDAVCLFYDSEFGITP-A--YLRSMGVD------------P----- 82 (333)
T ss_dssp EEEEEESSSSSHHHHHHH-HHHHHHH------HCTTCEEEEEESSCCCCH-H--HHHHTTCC------------G-----
T ss_pred eEEEECCCCCCHHHHHHH-HHHHHHh------cCCCceEEEEeccchhhH-H--HHHHhCCC------------H-----
Confidence 578899999999975443 2222211 123678999987665532 2 34554311 0
Q ss_pred HHhcCceEEEeCchHHHHH----HHcC-CCCCCCceEEEEcccchhc
Q psy7557 715 KIREGCHILIATPGRLNDF----VSRA-SIDLKAVSFVVLDEADRML 756 (936)
Q Consensus 715 ~l~~~~~IiV~Tp~~l~~~----l~~~-~~~~~~i~~lViDEah~l~ 756 (936)
.++++..|..+..+ +..- .+.-..+++||||=+..+.
T Consensus 83 -----d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 83 -----ERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp -----GGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred -----HHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 12444444333222 2110 1223468999999998775
No 323
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=66.32 E-value=4.5 Score=40.44 Aligned_cols=52 Identities=17% Similarity=0.161 Sum_probs=31.1
Q ss_pred cCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhc
Q psy7557 632 SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693 (936)
Q Consensus 632 ~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 693 (936)
.|.-+++.||+|+|||..+.--+. ... ..+..++|+.-. +-..++.+.+..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~-~~~--------~~~~~v~~~~~e-~~~~~~~~~~~~~ 73 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLW-NGL--------KMGEPGIYVALE-EHPVQVRQNMAQF 73 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHH-HHH--------HTTCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH-HHH--------hcCCeEEEEEcc-CCHHHHHHHHHHc
Confidence 567889999999999975332222 221 124567777643 3345566555544
No 324
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=66.23 E-value=15 Score=38.52 Aligned_cols=53 Identities=17% Similarity=0.260 Sum_probs=35.0
Q ss_pred ceEEEEcccchhc-cCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHHhc
Q psy7557 744 VSFVVLDEADRML-DLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYM 796 (936)
Q Consensus 744 i~~lViDEah~l~-~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~~~ 796 (936)
.+++++|.+-+.. +......+..+...+.++..++.+.++...++...++.+.
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~ 265 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFN 265 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHH
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHH
Confidence 4567788876543 2234455555666667788888898888777766666653
No 325
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=66.11 E-value=6.5 Score=47.70 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=15.9
Q ss_pred CCcEEEEecCCCCcchhhH
Q psy7557 633 GHDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 633 g~d~i~~apTGsGKTl~~~ 651 (936)
.++++++||+|+|||...-
T Consensus 191 ~~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CCCCEEEECTTSCHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHH
Confidence 3589999999999997544
No 326
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=65.61 E-value=13 Score=38.42 Aligned_cols=53 Identities=17% Similarity=0.297 Sum_probs=27.9
Q ss_pred CCceEEEEccchhhh-cCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHH
Q psy7557 222 KAVSFVVLDEADRML-DLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKK 274 (936)
Q Consensus 222 ~~~~~lViDEah~l~-~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~ 274 (936)
.+.+++||||.-.+. +......+..+...+.++.-++.+.++...+....++.
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~ 232 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARA 232 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHH
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHHHH
Confidence 467899999994432 21122333344444445544555777655444444443
No 327
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=65.39 E-value=11 Score=40.31 Aligned_cols=123 Identities=13% Similarity=0.145 Sum_probs=0.0
Q ss_pred cCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhccCCCCEEEEEeCCccchH
Q psy7557 112 SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEP 191 (936)
Q Consensus 112 ~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~ 191 (936)
.|+-+++.+|+|+|||..++--+.... ..+..++|+..-..+.....+.+.-
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~---------~~g~~vlyi~~E~s~~~~~a~~~g~------------------- 124 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQ---------KAGGTCAFIDAEHALDPVYARALGV------------------- 124 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---------HTTCCEEEEESSCCCCHHHHHHTTC-------------------
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHH---------HCCCeEEEEECCCChhHHHHHHcCC-------------------
Q ss_pred HHHHhhcCCcEEEeCCchhHHHHHc--CCcCCCCceEEEEccchhhhcCC-----------------CHHHHHHHHhhcC
Q psy7557 192 QLEKIREGCHILIATPGRLNDFVSR--ASIDLKAVSFVVLDEADRMLDLG-----------------FEPQINKTSIYIN 252 (936)
Q Consensus 192 ~~~~~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~~~lViDEah~l~~~~-----------------~~~~~~~i~~~~~ 252 (936)
..-+++|..|..+.+.+.. ....-..+++||||.+..+.... ....+..+.....
T Consensus 125 ------d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~ 198 (366)
T 1xp8_A 125 ------NTDELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILS 198 (366)
T ss_dssp ------CGGGCEEECCSSHHHHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHT
T ss_pred ------CHHHceeecCCcHHHHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHH
Q ss_pred CCCcEEEEEeccchHH
Q psy7557 253 PNRQTVMTSATWNKDV 268 (936)
Q Consensus 253 ~~~q~~~~SAT~~~~~ 268 (936)
...-.++++.-+...+
T Consensus 199 ~~~~~VI~~nq~~~~~ 214 (366)
T 1xp8_A 199 KTGTAAIFINQVREKI 214 (366)
T ss_dssp TTCCEEEEEEEC----
T ss_pred HcCCEEEEEEeccccc
No 328
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=62.45 E-value=3.3 Score=46.51 Aligned_cols=30 Identities=13% Similarity=0.152 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhcCCcEEEEecCCCCcchhc
Q psy7557 101 PIQAQAWPILMSGHDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 101 ~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~ 130 (936)
..=..+...+..|.++++.||+|+|||..+
T Consensus 29 ~~i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 29 HAIRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 333445556678899999999999999753
No 329
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=62.44 E-value=11 Score=41.80 Aligned_cols=17 Identities=24% Similarity=0.387 Sum_probs=13.5
Q ss_pred CcEEEEecCCCCcchhc
Q psy7557 114 HDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 114 ~d~l~~apTGsGKT~~~ 130 (936)
.-+.++|++|||||...
T Consensus 294 eVI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCcccHHHHH
Confidence 34677899999999854
No 330
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=62.31 E-value=2.6 Score=40.11 Aligned_cols=19 Identities=11% Similarity=0.247 Sum_probs=15.8
Q ss_pred cCCcEEEEecCCCCcchhc
Q psy7557 112 SGHDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 112 ~g~d~l~~apTGsGKT~~~ 130 (936)
.|+-++++||+|||||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667888999999999853
No 331
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=62.07 E-value=3.1 Score=44.69 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=17.4
Q ss_pred HhcCCcEEEEecCCCCcchh
Q psy7557 110 LMSGHDMIGIAQTGTGKTFA 129 (936)
Q Consensus 110 ~~~g~d~l~~apTGsGKT~~ 129 (936)
+..|..++++||||||||..
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 45788999999999999984
No 332
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=61.67 E-value=5 Score=42.43 Aligned_cols=38 Identities=21% Similarity=0.154 Sum_probs=23.6
Q ss_pred cCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcC
Q psy7557 112 SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAP 158 (936)
Q Consensus 112 ~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~P 158 (936)
.|.=+++.|++|+|||..++- +...+.. .+..++|++.
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~-ia~~~a~--------~g~~Vl~fSl 82 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMN-MVLSALN--------DDRGVAVFSL 82 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHH-HHHHHHH--------TTCEEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHH-HHHHHHH--------cCCeEEEEeC
Confidence 345577789999999985443 3333321 3456777764
No 333
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=61.65 E-value=2.6 Score=40.56 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=15.4
Q ss_pred cCCcEEEEecCCCCcchhc
Q psy7557 112 SGHDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 112 ~g~d~l~~apTGsGKT~~~ 130 (936)
.|+-++++||||+|||..+
T Consensus 33 ~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TTEEEEEECCCTTTTHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3567899999999998643
No 334
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=61.58 E-value=9.1 Score=39.67 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=16.3
Q ss_pred cCCcEEEEecCCCCcchhc
Q psy7557 112 SGHDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 112 ~g~d~l~~apTGsGKT~~~ 130 (936)
.+.++++.||+|+|||..+
T Consensus 49 ~~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3578999999999999864
No 335
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=61.54 E-value=8.6 Score=40.01 Aligned_cols=90 Identities=9% Similarity=0.048 Sum_probs=49.8
Q ss_pred cEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhccCCCCEEEEEeCCccchHHHH
Q psy7557 115 DMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLE 194 (936)
Q Consensus 115 d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 194 (936)
-+++.+|.|+|||...+- ++..... ...+.+++|+..-..+... .+++++.. .
T Consensus 30 iteI~G~pGsGKTtL~Lq-~~~~~~~------~g~g~~vlyId~E~s~~~~---ra~~lGvd------------~----- 82 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLT-MVSSYMR------QYPDAVCLFYDSEFGITPA---YLRSMGVD------------P----- 82 (333)
T ss_dssp EEEEEESSSSSHHHHHHH-HHHHHHH------HCTTCEEEEEESSCCCCHH---HHHHTTCC------------G-----
T ss_pred eEEEECCCCCCHHHHHHH-HHHHHHh------cCCCceEEEEeccchhhHH---HHHHhCCC------------H-----
Confidence 478889999999986443 3333221 0125678888765554322 24444211 0
Q ss_pred HhhcCCcEEEeCCchhHHH-HH---c-CCcCCCCceEEEEccchhhh
Q psy7557 195 KIREGCHILIATPGRLNDF-VS---R-ASIDLKAVSFVVLDEADRML 236 (936)
Q Consensus 195 ~~~~~~~Iiv~Tp~~l~~~-l~---~-~~~~~~~~~~lViDEah~l~ 236 (936)
-++++..|..+... +. . ..+.-..+++||||=+..+.
T Consensus 83 -----d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 83 -----ERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp -----GGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred -----HHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 13555555554333 21 1 01233468999999888664
No 336
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=61.29 E-value=13 Score=39.02 Aligned_cols=127 Identities=13% Similarity=0.150 Sum_probs=0.0
Q ss_pred cCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCC---------CCC----CEEEEEcCcHHH-HHHHHHHHHhccCCC
Q psy7557 112 SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISE---------RAG----PSVLVMAPTREL-ATQIEREVNKIDYKG 177 (936)
Q Consensus 112 ~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~---------~~~----~~~lil~Pt~~L-a~Q~~~~~~~~~~~~ 177 (936)
.|.-+++.||+|+|||..++--+...... . ..+ ..++|+.-...+ ..++.+.++.+
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~------~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~---- 166 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNP------EFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHA---- 166 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCG------GGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHH----
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcc------ccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHc----
Q ss_pred CEEEEEeCCccchHHHHHhhcCCcEEEeCCch------hHHHHHcCCcCCCCceEEEEccchhhhcCCC-----------
Q psy7557 178 LKAVCVYGGKEIEPQLEKIREGCHILIATPGR------LNDFVSRASIDLKAVSFVVLDEADRMLDLGF----------- 240 (936)
Q Consensus 178 ~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~------l~~~l~~~~~~~~~~~~lViDEah~l~~~~~----------- 240 (936)
|.+...... ++.+..|.. +...+........++++||||....+....+
T Consensus 167 --------g~~~~~~~~------~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~ 232 (322)
T 2i1q_A 167 --------GIDGQTVLD------NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQ 232 (322)
T ss_dssp --------TCCHHHHHH------TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHH
T ss_pred --------CCCHHHHhc------CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHH
Q ss_pred --HHHHHHHHhhcCCCCcEEEEEe
Q psy7557 241 --EPQINKTSIYINPNRQTVMTSA 262 (936)
Q Consensus 241 --~~~~~~i~~~~~~~~q~~~~SA 262 (936)
...+..+........-.++++.
T Consensus 233 ~~~~~~~~L~~la~~~~~~vi~~n 256 (322)
T 2i1q_A 233 KLGRHMATLNKLADLFNCVVLVTN 256 (322)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEC
No 337
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=61.21 E-value=20 Score=39.16 Aligned_cols=20 Identities=20% Similarity=0.119 Sum_probs=14.8
Q ss_pred CCcEEEEecCCCCcchhchH
Q psy7557 113 GHDMIGIAQTGTGKTFAFLL 132 (936)
Q Consensus 113 g~d~l~~apTGsGKT~~~~l 132 (936)
++-+.+++++|+|||.....
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~ 117 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAK 117 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34566779999999986543
No 338
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=61.13 E-value=28 Score=36.85 Aligned_cols=20 Identities=20% Similarity=0.047 Sum_probs=15.9
Q ss_pred cCCcEEEEecCCCCcchhhH
Q psy7557 632 SGHDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 632 ~g~d~i~~apTGsGKTl~~~ 651 (936)
.|.-+.+.+|+|||||....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~ 149 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAH 149 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45678899999999997543
No 339
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=60.77 E-value=6.7 Score=38.27 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHhcCCcEEEEecCCCCcchhc
Q psy7557 100 SPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 100 ~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~ 130 (936)
+.-|..++..+..|.-+.+.||.|||||..+
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 3345667777788888899999999999853
No 340
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=60.64 E-value=5.3 Score=43.45 Aligned_cols=42 Identities=26% Similarity=0.478 Sum_probs=28.5
Q ss_pred cCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHH
Q psy7557 632 SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTREL 682 (936)
Q Consensus 632 ~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~L 682 (936)
.+.++++.+|||||||...-.-+. ... ..+.+++++=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~-~~~--------~~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLL-REY--------MQGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH-HHH--------TTTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHH-HHH--------HCCCEEEEEeCCcCH
Confidence 567899999999999975433222 221 235678888887664
No 341
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=60.27 E-value=6.5 Score=42.74 Aligned_cols=41 Identities=27% Similarity=0.531 Sum_probs=27.6
Q ss_pred cCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHH
Q psy7557 112 SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRE 161 (936)
Q Consensus 112 ~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~ 161 (936)
.+.+++++||||||||...-. ++.... ..+.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~-~~~~~~--------~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM-LLLREY--------MQGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH-HHHHHH--------TTTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHH-HHHHHH--------HCCCEEEEEeCCcC
Confidence 567899999999999975433 222222 23556778877755
No 342
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=60.11 E-value=7.1 Score=52.91 Aligned_cols=47 Identities=15% Similarity=0.159 Sum_probs=33.7
Q ss_pred HHHHHHHHhCCCCCCcHHHHHH----HHhhhcCCcEEEEecCCCCcchhhHH
Q psy7557 605 PEILRQLENLSFTTPSPIQAQA----WPILMSGHDMIGIAQTGTGKTFAFLL 652 (936)
Q Consensus 605 ~~~~~~l~~~g~~~p~~iQ~~a----i~~~l~g~d~i~~apTGsGKTl~~~l 652 (936)
..+.+.+.+.|+ .+++.+..- ...+...+.++++||||||||.++-.
T Consensus 892 ~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 892 QCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 346777888888 567665332 23344568899999999999997654
No 343
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=60.04 E-value=5.8 Score=42.30 Aligned_cols=91 Identities=15% Similarity=0.191 Sum_probs=0.0
Q ss_pred cCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHHHHHHHHHHhccCCCCEEEEEeCCccchH
Q psy7557 112 SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEP 191 (936)
Q Consensus 112 ~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~ 191 (936)
.|.-+++.+|+|+|||...+-.+.... ..+..++|+..-..+.....+.+.-
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~---------~~gg~VlyId~E~s~~~~ra~rlgv------------------- 111 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ---------KMGGVAAFIDAEHALDPVYAKNLGV------------------- 111 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH---------HTTCCEEEEESSCCCCHHHHHHHTC-------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH---------hcCCeEEEEecccccchHHHHHcCC-------------------
Q ss_pred HHHHhhcCCcEEEeCCchhHHHHHc--CCcCCCCceEEEEccchhhh
Q psy7557 192 QLEKIREGCHILIATPGRLNDFVSR--ASIDLKAVSFVVLDEADRML 236 (936)
Q Consensus 192 ~~~~~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~~~lViDEah~l~ 236 (936)
..-++.+..|..+.+.+.. ....-..++++|||.+-.+.
T Consensus 112 ------~~~~l~i~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~~l~ 152 (356)
T 3hr8_A 112 ------DLKSLLISQPDHGEQALEIVDELVRSGVVDLIVVDSVAALV 152 (356)
T ss_dssp ------CGGGCEEECCSSHHHHHHHHHHHHHTSCCSEEEEECTTTCC
T ss_pred ------chhhhhhhhccCHHHHHHHHHHHhhhcCCCeEEehHhhhhc
No 344
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=59.95 E-value=3.4 Score=43.51 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=14.6
Q ss_pred CcEEEEecCCCCcchhch
Q psy7557 114 HDMIGIAQTGTGKTFAFL 131 (936)
Q Consensus 114 ~d~l~~apTGsGKT~~~~ 131 (936)
+-++++||||||||..+.
T Consensus 41 ~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 457888999999998643
No 345
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=59.92 E-value=11 Score=38.20 Aligned_cols=44 Identities=20% Similarity=0.138 Sum_probs=31.3
Q ss_pred HHHHHHHHhCCCCCCcHHHHHH-HHhhhcCC-----cEEEEecCCCCcchhhH
Q psy7557 605 PEILRQLENLSFTTPSPIQAQA-WPILMSGH-----DMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 605 ~~~~~~l~~~g~~~p~~iQ~~a-i~~~l~g~-----d~i~~apTGsGKTl~~~ 651 (936)
.++.+.|+-.||. |++-.. +...+.++ .+++.+|.|+|||+.+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 3578888888883 666443 45555543 48999999999998654
No 346
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=59.86 E-value=4.8 Score=40.91 Aligned_cols=19 Identities=26% Similarity=0.378 Sum_probs=16.4
Q ss_pred cCCcEEEEecCCCCcchhh
Q psy7557 632 SGHDMIGIAQTGTGKTFAF 650 (936)
Q Consensus 632 ~g~d~i~~apTGsGKTl~~ 650 (936)
.+.++++.+|+|+|||..+
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4679999999999999754
No 347
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=59.71 E-value=3 Score=43.33 Aligned_cols=16 Identities=25% Similarity=0.328 Sum_probs=13.1
Q ss_pred EEEEecCCCCcchhch
Q psy7557 116 MIGIAQTGTGKTFAFL 131 (936)
Q Consensus 116 ~l~~apTGsGKT~~~~ 131 (936)
++++||||||||..+.
T Consensus 13 i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 13 IFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCccCHHHHHH
Confidence 6778999999997543
No 348
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=59.70 E-value=8.8 Score=37.38 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=25.1
Q ss_pred cHHHHHHHHhhhcCCcEEEEecCCCCcchhh
Q psy7557 620 SPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 650 (936)
Q Consensus 620 ~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~ 650 (936)
+.-|..++..+..|.-+.+.+|.|||||...
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 4446677877888888999999999999743
No 349
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.68 E-value=2.5 Score=46.34 Aligned_cols=56 Identities=13% Similarity=0.194 Sum_probs=31.3
Q ss_pred CCCcCChHHhhcCCHHHHHHHHhC---CCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhh
Q psy7557 591 PNPVTSFKQAFQHYPEILRQLENL---SFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 650 (936)
Q Consensus 591 p~~~~~f~~~~~l~~~~~~~l~~~---g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~ 650 (936)
..|..+|++..++ +...+.|... -+.+|--++...++ --+.+|+.||+|+|||+.+
T Consensus 174 ~~p~~t~~digGl-~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 174 EKPTETYSDVGGL-DKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SSCSCCGGGSCSC-HHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHHH
T ss_pred CCCCCChHhcCcH-HHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHHH
Confidence 3456678874444 4444444331 12233333222111 2368999999999999753
No 350
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=59.55 E-value=2.6 Score=42.90 Aligned_cols=20 Identities=20% Similarity=0.162 Sum_probs=16.6
Q ss_pred HhcCCcEEEEecCCCCcchh
Q psy7557 110 LMSGHDMIGIAQTGTGKTFA 129 (936)
Q Consensus 110 ~~~g~d~l~~apTGsGKT~~ 129 (936)
+..|.-+.++||||||||..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 44667788999999999985
No 351
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=59.49 E-value=11 Score=38.08 Aligned_cols=43 Identities=21% Similarity=0.149 Sum_probs=30.5
Q ss_pred HHHHHHHhCCCCCCcHHHHHH-HHHHhcCC-----cEEEEecCCCCcchhch
Q psy7557 86 EILRQLENLSFTTPSPIQAQA-WPILMSGH-----DMIGIAQTGTGKTFAFL 131 (936)
Q Consensus 86 ~l~~~l~~~g~~~~~~~Q~~a-i~~~~~g~-----d~l~~apTGsGKT~~~~ 131 (936)
.+.+.|+-.||. |++... +...+.|+ .+++.||.|+|||+.+.
T Consensus 74 ~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 74 RIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 477778888874 666444 44555543 48889999999998654
No 352
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=59.35 E-value=3.2 Score=40.13 Aligned_cols=20 Identities=20% Similarity=0.016 Sum_probs=16.9
Q ss_pred cCCcEEEEecCCCCcchhch
Q psy7557 112 SGHDMIGIAQTGTGKTFAFL 131 (936)
Q Consensus 112 ~g~d~l~~apTGsGKT~~~~ 131 (936)
.++.++++|++|||||..+-
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 46789999999999998653
No 353
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=59.31 E-value=3 Score=43.34 Aligned_cols=17 Identities=24% Similarity=0.145 Sum_probs=13.5
Q ss_pred cEEEEecCCCCcchhch
Q psy7557 115 DMIGIAQTGTGKTFAFL 131 (936)
Q Consensus 115 d~l~~apTGsGKT~~~~ 131 (936)
-++++||||||||..+.
T Consensus 5 ~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCcCCHHHHHH
Confidence 36778999999997543
No 354
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=59.23 E-value=2.9 Score=39.61 Aligned_cols=21 Identities=24% Similarity=0.129 Sum_probs=17.4
Q ss_pred hcCCcEEEEecCCCCcchhch
Q psy7557 111 MSGHDMIGIAQTGTGKTFAFL 131 (936)
Q Consensus 111 ~~g~d~l~~apTGsGKT~~~~ 131 (936)
..++.++++|++|||||...-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 456789999999999998644
No 355
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=58.93 E-value=5.4 Score=42.81 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=16.7
Q ss_pred cCCcEEEEecCCCCcchhch
Q psy7557 112 SGHDMIGIAQTGTGKTFAFL 131 (936)
Q Consensus 112 ~g~d~l~~apTGsGKT~~~~ 131 (936)
.+.++++.||+|+|||..+-
T Consensus 50 ~~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35689999999999998653
No 356
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=58.78 E-value=3.2 Score=39.43 Aligned_cols=19 Identities=11% Similarity=0.247 Sum_probs=15.8
Q ss_pred cCCcEEEEecCCCCcchhh
Q psy7557 632 SGHDMIGIAQTGTGKTFAF 650 (936)
Q Consensus 632 ~g~d~i~~apTGsGKTl~~ 650 (936)
.|+-+++++|+|||||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677889999999999743
No 357
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=58.74 E-value=3.3 Score=39.22 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=15.4
Q ss_pred CCcEEEEecCCCCcchhh
Q psy7557 633 GHDMIGIAQTGTGKTFAF 650 (936)
Q Consensus 633 g~d~i~~apTGsGKTl~~ 650 (936)
.+.+++.||+|+|||...
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 368999999999999754
No 358
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=58.56 E-value=3.7 Score=43.42 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=16.9
Q ss_pred HhcCCcEEEEecCCCCcch
Q psy7557 110 LMSGHDMIGIAQTGTGKTF 128 (936)
Q Consensus 110 ~~~g~d~l~~apTGsGKT~ 128 (936)
+..|..+.++||||||||.
T Consensus 168 i~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHHTCCEEEEESTTSCHHH
T ss_pred ccCCCEEEEECCCCCCHHH
Confidence 3478999999999999997
No 359
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=58.56 E-value=8.4 Score=43.20 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=28.4
Q ss_pred HHHHHHhCCCCCCcHHHHHHHHhhhcCCcEEEEecCCCCcchhh
Q psy7557 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 650 (936)
Q Consensus 607 ~~~~l~~~g~~~p~~iQ~~ai~~~l~g~d~i~~apTGsGKTl~~ 650 (936)
+...+.. .+---...-..++-.+..+.++++.||+|+|||..+
T Consensus 16 l~~~l~~-~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 16 LSSSLEK-GLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHT-TCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHh-hhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 4444543 332333444455566678899999999999999743
No 360
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=58.40 E-value=3.4 Score=39.26 Aligned_cols=19 Identities=26% Similarity=0.120 Sum_probs=16.1
Q ss_pred CCcEEEEecCCCCcchhch
Q psy7557 113 GHDMIGIAQTGTGKTFAFL 131 (936)
Q Consensus 113 g~d~l~~apTGsGKT~~~~ 131 (936)
++.++++|++|||||..+-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4678999999999998654
No 361
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=58.23 E-value=20 Score=36.99 Aligned_cols=53 Identities=17% Similarity=0.297 Sum_probs=27.2
Q ss_pred CCceEEEEcccchhc-cCCCHHHHHHHhhhcCCCceEEEEEecCChHHHHHHHH
Q psy7557 742 KAVSFVVLDEADRML-DLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKK 794 (936)
Q Consensus 742 ~~i~~lViDEah~l~-~~~~~~~~~~i~~~~~~~~q~v~~SAT~~~~~~~~~~~ 794 (936)
.+.++||||+.-.+. +......+..+.....+..-++.+.++...+....++.
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~ 232 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARA 232 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHH
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHHHH
Confidence 356899999995432 21122333334444445544556677654444444443
No 362
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=57.77 E-value=3.4 Score=38.92 Aligned_cols=19 Identities=16% Similarity=0.020 Sum_probs=15.5
Q ss_pred CCcEEEEecCCCCcchhch
Q psy7557 113 GHDMIGIAQTGTGKTFAFL 131 (936)
Q Consensus 113 g~d~l~~apTGsGKT~~~~ 131 (936)
++-++++|+.|||||.++-
T Consensus 3 ~~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568899999999998643
No 363
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=57.64 E-value=4.8 Score=42.00 Aligned_cols=19 Identities=26% Similarity=0.365 Sum_probs=16.5
Q ss_pred cCCcEEEEecCCCCcchhc
Q psy7557 112 SGHDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 112 ~g~d~l~~apTGsGKT~~~ 130 (936)
.+..+++.||||+|||..+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4578999999999999864
No 364
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=57.20 E-value=36 Score=28.10 Aligned_cols=47 Identities=19% Similarity=0.295 Sum_probs=40.5
Q ss_pred EEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCHHHHHHHHHHhhcC
Q psy7557 845 VMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSG 891 (936)
Q Consensus 845 ~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~~~R~~~~~~F~~g 891 (936)
.+||.+......++...++..|..+..++++...+.|.+-++.|...
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekq 51 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQ 51 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTT
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHc
Confidence 46788888888889999999999999999999999998888888654
No 365
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=57.17 E-value=8.8 Score=52.00 Aligned_cols=47 Identities=15% Similarity=0.166 Sum_probs=32.7
Q ss_pred HHHHHHHHhCCCCCCcHHHHH-H---HHHHhcCCcEEEEecCCCCcchhchH
Q psy7557 85 PEILRQLENLSFTTPSPIQAQ-A---WPILMSGHDMIGIAQTGTGKTFAFLL 132 (936)
Q Consensus 85 ~~l~~~l~~~g~~~~~~~Q~~-a---i~~~~~g~d~l~~apTGsGKT~~~~l 132 (936)
..+.+.+.+.|+ .+++.+.. + ...+...+.++++||||||||.++-.
T Consensus 892 ~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 892 QCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 346667777888 56666533 2 23344567899999999999998643
No 366
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=57.14 E-value=3.7 Score=39.72 Aligned_cols=19 Identities=16% Similarity=0.284 Sum_probs=15.0
Q ss_pred cCCcEEEEecCCCCcchhc
Q psy7557 112 SGHDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 112 ~g~d~l~~apTGsGKT~~~ 130 (936)
.|+-+.++||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677899999999999854
No 367
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=57.04 E-value=3.4 Score=43.68 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=18.8
Q ss_pred HHHhcCCcEEEEecCCCCcchhc
Q psy7557 108 PILMSGHDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 108 ~~~~~g~d~l~~apTGsGKT~~~ 130 (936)
..+..++++++.||+|+|||..+
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHH
Confidence 34456889999999999999754
No 368
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=56.95 E-value=29 Score=38.78 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=14.0
Q ss_pred cEEEEecCCCCcchhch
Q psy7557 115 DMIGIAQTGTGKTFAFL 131 (936)
Q Consensus 115 d~l~~apTGsGKT~~~~ 131 (936)
.+++++++|+|||..+.
T Consensus 103 vI~ivG~~GvGKTTl~~ 119 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCS 119 (504)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57788999999998654
No 369
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=56.91 E-value=4.3 Score=43.55 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=17.3
Q ss_pred hhcCCcEEEEecCCCCcchh
Q psy7557 630 LMSGHDMIGIAQTGTGKTFA 649 (936)
Q Consensus 630 ~l~g~d~i~~apTGsGKTl~ 649 (936)
+..|..+++++|||||||..
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 34788999999999999973
No 370
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=56.88 E-value=3.4 Score=39.15 Aligned_cols=21 Identities=24% Similarity=0.129 Sum_probs=17.5
Q ss_pred hcCCcEEEEecCCCCcchhhH
Q psy7557 631 MSGHDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 631 l~g~d~i~~apTGsGKTl~~~ 651 (936)
..++.+++.+++|||||...-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 456789999999999998644
No 371
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=56.68 E-value=3.8 Score=39.45 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=15.4
Q ss_pred cCCcEEEEecCCCCcchhh
Q psy7557 632 SGHDMIGIAQTGTGKTFAF 650 (936)
Q Consensus 632 ~g~d~i~~apTGsGKTl~~ 650 (936)
.|+-+++.+|||+|||..+
T Consensus 33 ~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TTEEEEEECCCTTTTHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3567899999999998643
No 372
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=56.47 E-value=9.8 Score=41.81 Aligned_cols=84 Identities=20% Similarity=0.187 Sum_probs=0.0
Q ss_pred EEEEecCCCCcchhhHHHHHHHhhccCCCCccCC-CCEEEEEe--cCHHHHHHHHHHHHhccCCCCEEEEEECCccchHH
Q psy7557 636 MIGIAQTGTGKTFAFLLPALIHTHLQTTPISERA-GPSVLVMA--PTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQ 712 (936)
Q Consensus 636 ~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~-~~~~lil~--Pt~~La~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~ 712 (936)
+++++++|+|||....--+.... .. |.+++++. |.+..+......+.. ..++.+.....+.+....
T Consensus 103 I~ivG~~GvGKTT~a~~LA~~l~---------~~~G~kVllvd~D~~r~~a~~ql~~~~~--~~~l~v~~~~~~~dp~~i 171 (433)
T 2xxa_A 103 VLMAGLQGAGKTTSVGKLGKFLR---------EKHKKKVLVVSADVYRPAAIKQLETLAE--QVGVDFFPSDVGQKPVDI 171 (433)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH---------HTSCCCEEEEECCCSSTTHHHHHHHHHH--HHTCEECCCCSSSCHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH---------HhcCCeEEEEecCCCCccHHHHHHhhcc--cCCeeEEeCCCCCCHHHH
Q ss_pred ----HHHHh-cCceEEEe-CchHH
Q psy7557 713 ----LEKIR-EGCHILIA-TPGRL 730 (936)
Q Consensus 713 ----~~~l~-~~~~IiV~-Tp~~l 730 (936)
...+. .++|++|. ||+++
T Consensus 172 ~~~~l~~~~~~~~D~VIIDTpG~l 195 (433)
T 2xxa_A 172 VNAALKEAKLKFYDVLLVDTAGRL 195 (433)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCCC
T ss_pred HHHHHHHHHhCCCCEEEEECCCcc
No 373
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=56.19 E-value=3.9 Score=39.89 Aligned_cols=19 Identities=21% Similarity=0.207 Sum_probs=15.4
Q ss_pred cCCcEEEEecCCCCcchhc
Q psy7557 112 SGHDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 112 ~g~d~l~~apTGsGKT~~~ 130 (936)
.|+=++++||+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4566788899999999854
No 374
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=56.06 E-value=3.7 Score=42.77 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=16.3
Q ss_pred cCCcEEEEecCCCCcchhc
Q psy7557 112 SGHDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 112 ~g~d~l~~apTGsGKT~~~ 130 (936)
.++.+++.||+|+|||..+
T Consensus 48 ~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCSEEEEECSSSSSHHHHH
T ss_pred CCceEEEECCCCcCHHHHH
Confidence 4578999999999999854
No 375
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=55.95 E-value=3.5 Score=43.42 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=14.9
Q ss_pred CcEEEEecCCCCcchhhH
Q psy7557 634 HDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 634 ~d~i~~apTGsGKTl~~~ 651 (936)
+-++++||||||||....
T Consensus 41 ~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468899999999997644
No 376
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=55.69 E-value=4.1 Score=39.36 Aligned_cols=20 Identities=20% Similarity=0.016 Sum_probs=16.9
Q ss_pred cCCcEEEEecCCCCcchhhH
Q psy7557 632 SGHDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 632 ~g~d~i~~apTGsGKTl~~~ 651 (936)
.++.+++++++|||||...-
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 46789999999999998654
No 377
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=55.62 E-value=13 Score=38.51 Aligned_cols=19 Identities=32% Similarity=0.343 Sum_probs=16.2
Q ss_pred CCcEEEEecCCCCcchhhH
Q psy7557 633 GHDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 633 g~d~i~~apTGsGKTl~~~ 651 (936)
..++++.||+|+|||..+-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999997543
No 378
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=55.41 E-value=3.8 Score=41.51 Aligned_cols=15 Identities=27% Similarity=0.078 Sum_probs=12.9
Q ss_pred EEEEecCCCCcchhc
Q psy7557 116 MIGIAQTGTGKTFAF 130 (936)
Q Consensus 116 ~l~~apTGsGKT~~~ 130 (936)
++++||||||||..+
T Consensus 4 i~I~G~~GSGKSTla 18 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCcCHHHHH
Confidence 678899999999854
No 379
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=55.33 E-value=3.9 Score=39.73 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=18.0
Q ss_pred hhhcCCcEEEEecCCCCcchhhH
Q psy7557 629 ILMSGHDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 629 ~~l~g~d~i~~apTGsGKTl~~~ 651 (936)
++..|+-+++++|+|||||...-
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~ 30 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIK 30 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHHH
Confidence 34567889999999999997543
No 380
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=55.25 E-value=3.7 Score=42.67 Aligned_cols=18 Identities=22% Similarity=0.148 Sum_probs=14.1
Q ss_pred CcEEEEecCCCCcchhhH
Q psy7557 634 HDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 634 ~d~i~~apTGsGKTl~~~ 651 (936)
+-+++.||||||||..+.
T Consensus 4 ~~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCcCCHHHHHH
Confidence 346788999999997544
No 381
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=55.22 E-value=6.4 Score=41.93 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=17.9
Q ss_pred HHHHHhcCCcE--EEEecCCCCcchh
Q psy7557 106 AWPILMSGHDM--IGIAQTGTGKTFA 129 (936)
Q Consensus 106 ai~~~~~g~d~--l~~apTGsGKT~~ 129 (936)
.+..++.|.|. +.-|+||||||.+
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyT 121 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYT 121 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEE
Confidence 34556788874 4559999999976
No 382
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=55.17 E-value=6.1 Score=42.06 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=17.8
Q ss_pred HHHhhhcCCc--EEEEecCCCCcchh
Q psy7557 626 AWPILMSGHD--MIGIAQTGTGKTFA 649 (936)
Q Consensus 626 ai~~~l~g~d--~i~~apTGsGKTl~ 649 (936)
.+..++.|.| +++.++||||||..
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyT 121 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYT 121 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEE
Confidence 3455667876 56668999999965
No 383
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=55.03 E-value=4.2 Score=38.65 Aligned_cols=19 Identities=26% Similarity=0.120 Sum_probs=16.1
Q ss_pred CCcEEEEecCCCCcchhhH
Q psy7557 633 GHDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 633 g~d~i~~apTGsGKTl~~~ 651 (936)
++.+++++++|||||..+-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4679999999999998654
No 384
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=54.88 E-value=6.2 Score=42.33 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=16.7
Q ss_pred cCCcEEEEecCCCCcchhhH
Q psy7557 632 SGHDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 632 ~g~d~i~~apTGsGKTl~~~ 651 (936)
.+.++++.+|+|+|||..+-
T Consensus 50 ~~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35689999999999998654
No 385
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=54.64 E-value=10 Score=36.68 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=28.4
Q ss_pred HHHHHHHhCCCCCCcHHHHHHHHhhhcC----CcEEEEecCCCCcchhh
Q psy7557 606 EILRQLENLSFTTPSPIQAQAWPILMSG----HDMIGIAQTGTGKTFAF 650 (936)
Q Consensus 606 ~~~~~l~~~g~~~p~~iQ~~ai~~~l~g----~d~i~~apTGsGKTl~~ 650 (936)
.+.+.|+-.|+ .+... ..++..++.+ +.+++.+|.|+|||..+
T Consensus 29 ~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 29 PIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 46666665555 44444 4555555554 35899999999999754
No 386
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=54.56 E-value=4.1 Score=42.24 Aligned_cols=17 Identities=24% Similarity=0.303 Sum_probs=13.6
Q ss_pred cEEEEecCCCCcchhhH
Q psy7557 635 DMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 635 d~i~~apTGsGKTl~~~ 651 (936)
-+++++|||||||..+.
T Consensus 12 ~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 12 AIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 36788999999997544
No 387
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=54.26 E-value=7.2 Score=49.72 Aligned_cols=35 Identities=23% Similarity=0.270 Sum_probs=22.8
Q ss_pred CCCceEEEEccchhhhcCCCHHHHHHHHhhcCCCC
Q psy7557 221 LKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNR 255 (936)
Q Consensus 221 ~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~ 255 (936)
+++-+++|+|||=--+|..-+..+.+.+.....++
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~ 1267 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRAREGR 1267 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSS
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCC
Confidence 45667899999876666655566666555544443
No 388
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=54.00 E-value=4.3 Score=38.23 Aligned_cols=19 Identities=16% Similarity=0.020 Sum_probs=15.6
Q ss_pred CCcEEEEecCCCCcchhhH
Q psy7557 633 GHDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 633 g~d~i~~apTGsGKTl~~~ 651 (936)
++-++++|+.|||||.+.-
T Consensus 3 ~~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568999999999998654
No 389
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=53.96 E-value=4.2 Score=39.34 Aligned_cols=20 Identities=20% Similarity=0.169 Sum_probs=16.4
Q ss_pred hcCCcEEEEecCCCCcchhc
Q psy7557 111 MSGHDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 111 ~~g~d~l~~apTGsGKT~~~ 130 (936)
..|.-+.++||+|||||...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35777889999999999854
No 390
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=53.90 E-value=9.9 Score=35.82 Aligned_cols=122 Identities=14% Similarity=0.143 Sum_probs=70.2
Q ss_pred CcHHHHHHHHhhhcCC--cEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHhccCC
Q psy7557 619 PSPIQAQAWPILMSGH--DMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYK 696 (936)
Q Consensus 619 p~~iQ~~ai~~~l~g~--d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~ 696 (936)
..+-|..|+..++..+ =.++.++-|++||...+--++... +..|.++.+|+|+..-.....+.... .
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a--------~~~Gr~V~vLAp~~~s~~~l~~~~~l---~ 103 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMA--------REQGREVQIIAADRRSQMNMKQDERL---S 103 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHH--------HHTTCCEEEECSTTHHHHHHSCTTTC---S
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHH--------HhcCeEEEEEcCchHHHHHHHhhcCc---C
Confidence 4567899999887543 456678999999987433322211 24688999999998765443332211 0
Q ss_pred CCEEEEEECCccchHHHHHHhcCceEEEeCchHHHHHHHcCCCCCCCceEEEEcccchhccCCCHHHHHHHhhhcCCCce
Q psy7557 697 GLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQ 776 (936)
Q Consensus 697 ~~~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q 776 (936)
+ +++ |- ..+......|..=+.+|||||-.|.-. +.+..+-.....+.|
T Consensus 104 ~-----------------------~t~--t~----~~ll~~~~~~tp~s~lIVD~AekLS~k---E~~~Lld~A~~~naq 151 (189)
T 2l8b_A 104 G-----------------------ELI--TG----RRQLLEGMAFTPGSTVIVDQGEKLSLK---ETLTLLDGAARHNVQ 151 (189)
T ss_dssp S-----------------------CSS--ST----TTTTTTSCCCCCCCEEEEEESSSHHHH---HHHHHHHHHHHTTCC
T ss_pred c-----------------------cee--eh----hhhhcCCCCCCCCCEEEEechhhcCHH---HHHHHHHHHHhcCCE
Confidence 0 000 10 111112222344458999999988642 223333333446688
Q ss_pred EEEEEec
Q psy7557 777 TVMTSAT 783 (936)
Q Consensus 777 ~v~~SAT 783 (936)
+|++--+
T Consensus 152 vvll~~~ 158 (189)
T 2l8b_A 152 VLITDSG 158 (189)
T ss_dssp EEEEESS
T ss_pred EEEeCCc
Confidence 8887655
No 391
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=53.87 E-value=6.8 Score=41.12 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=18.4
Q ss_pred HHHHHhcCCc--EEEEecCCCCcchhc
Q psy7557 106 AWPILMSGHD--MIGIAQTGTGKTFAF 130 (936)
Q Consensus 106 ai~~~~~g~d--~l~~apTGsGKT~~~ 130 (936)
.+..++.|.| ++..|+||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 3445678887 455699999999863
No 392
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=53.86 E-value=4.2 Score=42.19 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=15.8
Q ss_pred CCcEEEEecCCCCcchhc
Q psy7557 113 GHDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 113 g~d~l~~apTGsGKT~~~ 130 (936)
++.+++.||+|+|||..+
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 578999999999999854
No 393
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=53.80 E-value=4.8 Score=38.44 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=13.9
Q ss_pred CcEEEEecCCCCcchh
Q psy7557 114 HDMIGIAQTGTGKTFA 129 (936)
Q Consensus 114 ~d~l~~apTGsGKT~~ 129 (936)
|-++++||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5589999999999974
No 394
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=53.54 E-value=4.4 Score=41.00 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=15.5
Q ss_pred CCcEEEEecCCCCcchhc
Q psy7557 113 GHDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 113 g~d~l~~apTGsGKT~~~ 130 (936)
.+.+++.||+|+|||..+
T Consensus 39 ~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999854
No 395
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=53.31 E-value=6.5 Score=41.59 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=17.9
Q ss_pred HHHHHhcCCcE--EEEecCCCCcchh
Q psy7557 106 AWPILMSGHDM--IGIAQTGTGKTFA 129 (936)
Q Consensus 106 ai~~~~~g~d~--l~~apTGsGKT~~ 129 (936)
.+..++.|.|. +..|+||||||.+
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyT 111 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYS 111 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeE
Confidence 34456788874 5569999999986
No 396
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=53.28 E-value=5.2 Score=42.32 Aligned_cols=18 Identities=39% Similarity=0.525 Sum_probs=16.4
Q ss_pred hcCCcEEEEecCCCCcch
Q psy7557 631 MSGHDMIGIAQTGTGKTF 648 (936)
Q Consensus 631 l~g~d~i~~apTGsGKTl 648 (936)
..|..+.+++|||||||.
T Consensus 169 ~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHTCCEEEEESTTSCHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 468899999999999997
No 397
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=53.27 E-value=4.5 Score=39.03 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=16.0
Q ss_pred cCCcEEEEecCCCCcchhc
Q psy7557 112 SGHDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 112 ~g~d~l~~apTGsGKT~~~ 130 (936)
.|+=++++||+|+|||...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 5677888999999999853
No 398
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=53.24 E-value=4.3 Score=37.87 Aligned_cols=17 Identities=18% Similarity=0.114 Sum_probs=13.9
Q ss_pred cEEEEecCCCCcchhch
Q psy7557 115 DMIGIAQTGTGKTFAFL 131 (936)
Q Consensus 115 d~l~~apTGsGKT~~~~ 131 (936)
-++++||+|||||..+-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46788999999998643
No 399
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=53.02 E-value=4.7 Score=40.97 Aligned_cols=20 Identities=20% Similarity=0.162 Sum_probs=16.5
Q ss_pred hhcCCcEEEEecCCCCcchh
Q psy7557 630 LMSGHDMIGIAQTGTGKTFA 649 (936)
Q Consensus 630 ~l~g~d~i~~apTGsGKTl~ 649 (936)
+..|.-+.+++|||||||..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 34667789999999999974
No 400
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=52.99 E-value=4.6 Score=43.38 Aligned_cols=19 Identities=37% Similarity=0.494 Sum_probs=16.1
Q ss_pred CCcEEEEecCCCCcchhch
Q psy7557 113 GHDMIGIAQTGTGKTFAFL 131 (936)
Q Consensus 113 g~d~l~~apTGsGKT~~~~ 131 (936)
++.+++.||+|+|||..+-
T Consensus 70 ~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp TCEEEEEESTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4689999999999998654
No 401
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=52.83 E-value=4.8 Score=38.31 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=16.7
Q ss_pred cCCcEEEEecCCCCcchhch
Q psy7557 112 SGHDMIGIAQTGTGKTFAFL 131 (936)
Q Consensus 112 ~g~d~l~~apTGsGKT~~~~ 131 (936)
.++.++++|+.|||||.+.-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45789999999999998653
No 402
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=52.78 E-value=4.3 Score=42.95 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=18.7
Q ss_pred HhhhcCCcEEEEecCCCCcchhh
Q psy7557 628 PILMSGHDMIGIAQTGTGKTFAF 650 (936)
Q Consensus 628 ~~~l~g~d~i~~apTGsGKTl~~ 650 (936)
..+..++++++.+|+|+|||..+
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHH
Confidence 34456889999999999999754
No 403
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=52.71 E-value=6.4 Score=41.05 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=16.8
Q ss_pred cCCcEEEEecCCCCcchhhH
Q psy7557 632 SGHDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 632 ~g~d~i~~apTGsGKTl~~~ 651 (936)
.+.++++.+|+|+|||..+-
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr 43 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVAR 43 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHH
T ss_pred CCCcEEEECCCCchHHHHHH
Confidence 46789999999999997543
No 404
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=52.71 E-value=4.9 Score=39.18 Aligned_cols=20 Identities=20% Similarity=0.150 Sum_probs=16.0
Q ss_pred cCCcEEEEecCCCCcchhhH
Q psy7557 632 SGHDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 632 ~g~d~i~~apTGsGKTl~~~ 651 (936)
.|+-++++||+|||||...-
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 46678889999999997543
No 405
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=52.68 E-value=5.1 Score=38.85 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=17.3
Q ss_pred HhcCCcEEEEecCCCCcchhc
Q psy7557 110 LMSGHDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 110 ~~~g~d~l~~apTGsGKT~~~ 130 (936)
...|+-++++||+|||||...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 346778999999999999854
No 406
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=52.22 E-value=7.6 Score=41.50 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=17.8
Q ss_pred HHHHHhcCCcE--EEEecCCCCcchh
Q psy7557 106 AWPILMSGHDM--IGIAQTGTGKTFA 129 (936)
Q Consensus 106 ai~~~~~g~d~--l~~apTGsGKT~~ 129 (936)
.+..++.|.|. +..|+||||||.+
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyT 118 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYT 118 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEe
Confidence 34456788874 5559999999976
No 407
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=52.16 E-value=4.7 Score=42.02 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=16.6
Q ss_pred cCCcEEEEecCCCCcchhhH
Q psy7557 632 SGHDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 632 ~g~d~i~~apTGsGKTl~~~ 651 (936)
.++.+++.||+|+|||+.+-
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHH
Confidence 45789999999999997543
No 408
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=52.07 E-value=7.2 Score=40.95 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=17.7
Q ss_pred HHhhhcCCc--EEEEecCCCCcchhh
Q psy7557 627 WPILMSGHD--MIGIAQTGTGKTFAF 650 (936)
Q Consensus 627 i~~~l~g~d--~i~~apTGsGKTl~~ 650 (936)
+..++.|.| +++.++||||||...
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 70 VKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCeEEEEEECCCCCCCceEe
Confidence 445567876 566789999999753
No 409
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=51.98 E-value=4.6 Score=40.81 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=14.8
Q ss_pred CcEEEEecCCCCcchhc
Q psy7557 114 HDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 114 ~d~l~~apTGsGKT~~~ 130 (936)
+.+++.||+|+|||..+
T Consensus 46 ~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 57999999999999754
No 410
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=51.93 E-value=3.8 Score=39.10 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=15.9
Q ss_pred hcCCcEEEEecCCCCcchh
Q psy7557 111 MSGHDMIGIAQTGTGKTFA 129 (936)
Q Consensus 111 ~~g~d~l~~apTGsGKT~~ 129 (936)
..|.-++++||.|||||..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CTTEEEEEEECTTSCHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3567788999999999984
No 411
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=51.86 E-value=7.7 Score=41.14 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=18.2
Q ss_pred HHHHHhcCCc--EEEEecCCCCcchhc
Q psy7557 106 AWPILMSGHD--MIGIAQTGTGKTFAF 130 (936)
Q Consensus 106 ai~~~~~g~d--~l~~apTGsGKT~~~ 130 (936)
.+..++.|.| ++..|+||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 3455678877 455699999999763
No 412
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=51.72 E-value=36 Score=37.08 Aligned_cols=19 Identities=21% Similarity=0.162 Sum_probs=14.6
Q ss_pred CCcEEEEecCCCCcchhhH
Q psy7557 633 GHDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 633 g~d~i~~apTGsGKTl~~~ 651 (936)
++-+.+++++|+|||....
T Consensus 98 ~~vi~i~G~~GsGKTT~~~ 116 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAA 116 (425)
T ss_dssp SEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4557778999999997543
No 413
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=51.71 E-value=5.4 Score=37.29 Aligned_cols=18 Identities=17% Similarity=0.259 Sum_probs=15.3
Q ss_pred CCcEEEEecCCCCcchhc
Q psy7557 113 GHDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 113 g~d~l~~apTGsGKT~~~ 130 (936)
++.++++||.|||||...
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467899999999999854
No 414
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=51.45 E-value=6.9 Score=41.40 Aligned_cols=23 Identities=35% Similarity=0.627 Sum_probs=17.2
Q ss_pred HHhhhcCCc--EEEEecCCCCcchh
Q psy7557 627 WPILMSGHD--MIGIAQTGTGKTFA 649 (936)
Q Consensus 627 i~~~l~g~d--~i~~apTGsGKTl~ 649 (936)
+..++.|.| +++.++||||||..
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyT 111 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYS 111 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeE
Confidence 344567876 46668999999975
No 415
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=51.43 E-value=5.1 Score=38.71 Aligned_cols=19 Identities=16% Similarity=0.284 Sum_probs=14.9
Q ss_pred cCCcEEEEecCCCCcchhh
Q psy7557 632 SGHDMIGIAQTGTGKTFAF 650 (936)
Q Consensus 632 ~g~d~i~~apTGsGKTl~~ 650 (936)
.|+-+.++||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677899999999999754
No 416
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=51.39 E-value=18 Score=30.64 Aligned_cols=46 Identities=17% Similarity=0.111 Sum_probs=36.7
Q ss_pred HHHHHHhccCCCCcEEEEeCchHHHHHHHHHhhhcCCceeeecCCCC
Q psy7557 311 LMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLS 357 (936)
Q Consensus 311 l~~~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~ 357 (936)
+.+.+..+ ....++++||.+-..+...+..|...|+++..+.||+.
T Consensus 45 l~~~~~~l-~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 45 LREKWKIL-ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp HHHHGGGS-CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHHHHHhC-CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 33444444 45678999999988899999999999998888999864
No 417
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=51.38 E-value=7.8 Score=41.37 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=17.4
Q ss_pred HHHHhcCCcE--EEEecCCCCcchh
Q psy7557 107 WPILMSGHDM--IGIAQTGTGKTFA 129 (936)
Q Consensus 107 i~~~~~g~d~--l~~apTGsGKT~~ 129 (936)
+..++.|.|. +..|+||||||.+
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyT 101 (365)
T 2y65_A 77 VTDVLAGYNGTIFAYGQTSSGKTHT 101 (365)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCCceEEEeecCCCCCCceE
Confidence 4456788874 5559999999986
No 418
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=51.35 E-value=7.6 Score=40.83 Aligned_cols=26 Identities=27% Similarity=0.506 Sum_probs=19.7
Q ss_pred HHHHHHhcCCcE--EEEecCCCCcchhc
Q psy7557 105 QAWPILMSGHDM--IGIAQTGTGKTFAF 130 (936)
Q Consensus 105 ~ai~~~~~g~d~--l~~apTGsGKT~~~ 130 (936)
..+..++.|.|. +..|+||||||.+.
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 356677889874 55699999999763
No 419
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=51.30 E-value=4.9 Score=41.63 Aligned_cols=19 Identities=21% Similarity=0.343 Sum_probs=16.2
Q ss_pred CCcEEEEecCCCCcchhhH
Q psy7557 633 GHDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 633 g~d~i~~apTGsGKTl~~~ 651 (936)
++.+++.||+|+|||..+-
T Consensus 54 ~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 5789999999999997543
No 420
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=51.28 E-value=7.9 Score=41.16 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=18.4
Q ss_pred HHHHHhcCCcE--EEEecCCCCcchhc
Q psy7557 106 AWPILMSGHDM--IGIAQTGTGKTFAF 130 (936)
Q Consensus 106 ai~~~~~g~d~--l~~apTGsGKT~~~ 130 (936)
.+..++.|.|. +..|+||||||.+.
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 34556788874 55599999999863
No 421
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=51.13 E-value=7.9 Score=41.04 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=17.2
Q ss_pred HHHHhcCCcE--EEEecCCCCcchh
Q psy7557 107 WPILMSGHDM--IGIAQTGTGKTFA 129 (936)
Q Consensus 107 i~~~~~g~d~--l~~apTGsGKT~~ 129 (936)
+..++.|.|. +..|+||||||.+
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyT 106 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWT 106 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCCceeEEeecCCCCCCCEE
Confidence 3456788774 5559999999976
No 422
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=51.06 E-value=8.1 Score=41.13 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=18.0
Q ss_pred HHHHHhcCCcE--EEEecCCCCcchh
Q psy7557 106 AWPILMSGHDM--IGIAQTGTGKTFA 129 (936)
Q Consensus 106 ai~~~~~g~d~--l~~apTGsGKT~~ 129 (936)
.+..++.|.|. +..|+||||||.+
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceE
Confidence 44556788874 4559999999976
No 423
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=50.97 E-value=7.7 Score=41.24 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=17.3
Q ss_pred HHHHhcCCc--EEEEecCCCCcchh
Q psy7557 107 WPILMSGHD--MIGIAQTGTGKTFA 129 (936)
Q Consensus 107 i~~~~~g~d--~l~~apTGsGKT~~ 129 (936)
+..++.|.| ++..|+||||||.+
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyT 97 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYT 97 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceE
Confidence 345678877 45569999999976
No 424
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=50.84 E-value=7.9 Score=41.39 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=17.2
Q ss_pred HHHHhcCCcE--EEEecCCCCcchh
Q psy7557 107 WPILMSGHDM--IGIAQTGTGKTFA 129 (936)
Q Consensus 107 i~~~~~g~d~--l~~apTGsGKT~~ 129 (936)
+..++.|.|. +..|+||||||.+
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyT 106 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYT 106 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhcCCeeEEEEeCCCCCCCceE
Confidence 4456788874 5559999999975
No 425
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=50.80 E-value=5.8 Score=41.51 Aligned_cols=17 Identities=24% Similarity=0.243 Sum_probs=14.1
Q ss_pred cEEEEecCCCCcchhch
Q psy7557 115 DMIGIAQTGTGKTFAFL 131 (936)
Q Consensus 115 d~l~~apTGsGKT~~~~ 131 (936)
-++++||||||||..+.
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57889999999998543
No 426
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=50.76 E-value=5.3 Score=37.98 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=15.7
Q ss_pred cCCcEEEEecCCCCcchhch
Q psy7557 112 SGHDMIGIAQTGTGKTFAFL 131 (936)
Q Consensus 112 ~g~d~l~~apTGsGKT~~~~ 131 (936)
+|+-++++|+.|||||...-
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35678899999999998643
No 427
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=50.70 E-value=59 Score=34.38 Aligned_cols=17 Identities=24% Similarity=0.141 Sum_probs=13.9
Q ss_pred cEEEEecCCCCcchhhH
Q psy7557 635 DMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 635 d~i~~apTGsGKTl~~~ 651 (936)
.+.+++++|+|||..+.
T Consensus 81 ~I~i~G~~G~GKSTl~~ 97 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIE 97 (355)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57888999999997543
No 428
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=50.66 E-value=7.8 Score=41.07 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=19.4
Q ss_pred HHHHHhcCCcE--EEEecCCCCcchhc
Q psy7557 106 AWPILMSGHDM--IGIAQTGTGKTFAF 130 (936)
Q Consensus 106 ai~~~~~g~d~--l~~apTGsGKT~~~ 130 (936)
.+..++.|.|. +..|+||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 56677889874 55599999999763
No 429
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=50.65 E-value=5.2 Score=40.46 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=15.8
Q ss_pred CCcEEEEecCCCCcchhhH
Q psy7557 633 GHDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 633 g~d~i~~apTGsGKTl~~~ 651 (936)
.+.+++.+|+|+|||..+-
T Consensus 39 ~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999997543
No 430
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=50.63 E-value=12 Score=51.19 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=33.9
Q ss_pred HHHHHHHHhCCCCCCcHHHHHHHH----hhhcCCcEEEEecCCCCcchhhHH
Q psy7557 605 PEILRQLENLSFTTPSPIQAQAWP----ILMSGHDMIGIAQTGTGKTFAFLL 652 (936)
Q Consensus 605 ~~~~~~l~~~g~~~p~~iQ~~ai~----~~l~g~d~i~~apTGsGKTl~~~l 652 (936)
..+.+.+.+.|+ .|+|.+..=+- .+...+.++++||||||||.++-.
T Consensus 875 ~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~ 925 (3245)
T 3vkg_A 875 KKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEV 925 (3245)
T ss_dssp HHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHH
T ss_pred HHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHH
Confidence 457778888999 66665544332 233567899999999999998763
No 431
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=50.62 E-value=7.8 Score=41.30 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=17.9
Q ss_pred HHHHHhcCCcE--EEEecCCCCcchh
Q psy7557 106 AWPILMSGHDM--IGIAQTGTGKTFA 129 (936)
Q Consensus 106 ai~~~~~g~d~--l~~apTGsGKT~~ 129 (936)
.+..++.|.|. +..|+||||||.+
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyT 105 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFT 105 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceE
Confidence 34456788874 5559999999976
No 432
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=50.62 E-value=20 Score=30.44 Aligned_cols=46 Identities=15% Similarity=0.083 Sum_probs=36.7
Q ss_pred HHHHHhccCCCCcEEEEcCChHHHHHHHHHHHhcCCceEEEeCCCCH
Q psy7557 832 MEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQ 878 (936)
Q Consensus 832 ~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~L~~~~~~~~~~h~~l~~ 878 (936)
...+... ....++++||.+-..+...+..|...|+++..+.||+..
T Consensus 46 ~~~~~~l-~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~~ 91 (108)
T 3gk5_A 46 REKWKIL-ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQS 91 (108)
T ss_dssp HHHGGGS-CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHHH
T ss_pred HHHHHhC-CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHHH
Confidence 3334444 456789999999888999999999999988899998653
No 433
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=50.54 E-value=8.1 Score=41.31 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=17.1
Q ss_pred HHhhhcCCc--EEEEecCCCCcchh
Q psy7557 627 WPILMSGHD--MIGIAQTGTGKTFA 649 (936)
Q Consensus 627 i~~~l~g~d--~i~~apTGsGKTl~ 649 (936)
+..++.|.| +++.++||||||..
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyT 118 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYT 118 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEe
Confidence 445667876 55668999999965
No 434
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=50.54 E-value=8 Score=41.87 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=17.2
Q ss_pred HHHHhcCCc--EEEEecCCCCcchh
Q psy7557 107 WPILMSGHD--MIGIAQTGTGKTFA 129 (936)
Q Consensus 107 i~~~~~g~d--~l~~apTGsGKT~~ 129 (936)
+..++.|.| ++..|+||||||.+
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyT 171 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHT 171 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHH
T ss_pred HHHHhcCCceeEEeecCCCCCCCeE
Confidence 345667877 45569999999976
No 435
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=50.41 E-value=7.2 Score=41.69 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=18.8
Q ss_pred HHHHHhcCCcE--EEEecCCCCcchh
Q psy7557 106 AWPILMSGHDM--IGIAQTGTGKTFA 129 (936)
Q Consensus 106 ai~~~~~g~d~--l~~apTGsGKT~~ 129 (936)
.+..++.|.|. +..|+||||||.+
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyT 96 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFT 96 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEe
Confidence 56677889874 4559999999976
No 436
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=50.36 E-value=11 Score=36.40 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=26.1
Q ss_pred HHHHHHhCCCCCCcHHHHHHHHHHhcC----CcEEEEecCCCCcchhc
Q psy7557 87 ILRQLENLSFTTPSPIQAQAWPILMSG----HDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 87 l~~~l~~~g~~~~~~~Q~~ai~~~~~g----~d~l~~apTGsGKT~~~ 130 (936)
+.+-|+-.|+ .+... ..++..++.+ +.+++.||.|+|||..+
T Consensus 30 I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 30 IVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 4555554444 33333 4445555544 35888999999999864
No 437
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=50.29 E-value=8.2 Score=40.91 Aligned_cols=25 Identities=28% Similarity=0.571 Sum_probs=18.3
Q ss_pred HHHHHhcCCcE--EEEecCCCCcchhc
Q psy7557 106 AWPILMSGHDM--IGIAQTGTGKTFAF 130 (936)
Q Consensus 106 ai~~~~~g~d~--l~~apTGsGKT~~~ 130 (936)
.+..++.|.|. +..|+||||||.+.
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 34556788874 55589999999863
No 438
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=50.13 E-value=5.4 Score=38.48 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=16.2
Q ss_pred cCCcEEEEecCCCCcchhh
Q psy7557 632 SGHDMIGIAQTGTGKTFAF 650 (936)
Q Consensus 632 ~g~d~i~~apTGsGKTl~~ 650 (936)
.|+-++++||+|+|||...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 5778899999999999743
No 439
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=50.12 E-value=7.7 Score=41.20 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=19.7
Q ss_pred HHHHHhcCCcE--EEEecCCCCcchhc
Q psy7557 106 AWPILMSGHDM--IGIAQTGTGKTFAF 130 (936)
Q Consensus 106 ai~~~~~g~d~--l~~apTGsGKT~~~ 130 (936)
.+..++.|.|. +..|+||||||.+.
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 56778889875 45589999999863
No 440
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=50.08 E-value=5.1 Score=40.53 Aligned_cols=17 Identities=24% Similarity=0.045 Sum_probs=13.8
Q ss_pred cEEEEecCCCCcchhhH
Q psy7557 635 DMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 635 d~i~~apTGsGKTl~~~ 651 (936)
-+++++|||||||..+.
T Consensus 3 li~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 36789999999997544
No 441
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=50.06 E-value=5.5 Score=42.77 Aligned_cols=19 Identities=37% Similarity=0.494 Sum_probs=16.1
Q ss_pred CCcEEEEecCCCCcchhhH
Q psy7557 633 GHDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 633 g~d~i~~apTGsGKTl~~~ 651 (936)
++.+++.||+|+|||..+-
T Consensus 70 ~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp TCEEEEEESTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4689999999999998644
No 442
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=50.00 E-value=5.2 Score=42.24 Aligned_cols=16 Identities=25% Similarity=0.198 Sum_probs=13.3
Q ss_pred cEEEEecCCCCcchhc
Q psy7557 115 DMIGIAQTGTGKTFAF 130 (936)
Q Consensus 115 d~l~~apTGsGKT~~~ 130 (936)
-++++||||||||..+
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 4678899999999854
No 443
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=49.83 E-value=8.4 Score=41.68 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=17.6
Q ss_pred HHhhhcCCc--EEEEecCCCCcchhh
Q psy7557 627 WPILMSGHD--MIGIAQTGTGKTFAF 650 (936)
Q Consensus 627 i~~~l~g~d--~i~~apTGsGKTl~~ 650 (936)
+..++.|.| +++.++||||||...
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHhcCCceeEEeecCCCCCCCeEe
Confidence 345567876 566689999999753
No 444
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=49.80 E-value=8.2 Score=41.04 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=17.3
Q ss_pred HHHHhcCCcE--EEEecCCCCcchh
Q psy7557 107 WPILMSGHDM--IGIAQTGTGKTFA 129 (936)
Q Consensus 107 i~~~~~g~d~--l~~apTGsGKT~~ 129 (936)
+..++.|.|. +..|+||||||.+
T Consensus 98 v~~~l~G~n~tifAYGqTGSGKTyT 122 (355)
T 3lre_A 98 LRSFLNGYNCTVLAYGATGAGKTHT 122 (355)
T ss_dssp HHHHTTTCCEEEEEECCTTSSHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCceee
Confidence 3456688874 5558999999986
No 445
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=49.78 E-value=5.5 Score=38.51 Aligned_cols=21 Identities=19% Similarity=0.128 Sum_probs=16.8
Q ss_pred hcCCcEEEEecCCCCcchhhH
Q psy7557 631 MSGHDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 631 l~g~d~i~~apTGsGKTl~~~ 651 (936)
..|.-+.+.||+|||||...-
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~ 24 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRK 24 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 357778899999999997543
No 446
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=49.76 E-value=5.3 Score=37.22 Aligned_cols=17 Identities=18% Similarity=0.114 Sum_probs=13.9
Q ss_pred cEEEEecCCCCcchhhH
Q psy7557 635 DMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 635 d~i~~apTGsGKTl~~~ 651 (936)
-+++.|++|||||...-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998544
No 447
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=49.60 E-value=8.4 Score=40.85 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=17.5
Q ss_pred HHhhhcCCc--EEEEecCCCCcchhh
Q psy7557 627 WPILMSGHD--MIGIAQTGTGKTFAF 650 (936)
Q Consensus 627 i~~~l~g~d--~i~~apTGsGKTl~~ 650 (936)
+..++.|.| +++.++||||||...
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 70 IDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHcCCccceeeecCCCCCCCeEE
Confidence 445567776 566689999999753
No 448
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=49.60 E-value=8.2 Score=41.20 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=17.1
Q ss_pred HHhhhcCCc--EEEEecCCCCcchh
Q psy7557 627 WPILMSGHD--MIGIAQTGTGKTFA 649 (936)
Q Consensus 627 i~~~l~g~d--~i~~apTGsGKTl~ 649 (936)
+..++.|.| +++.++||||||..
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyT 101 (365)
T 2y65_A 77 VTDVLAGYNGTIFAYGQTSSGKTHT 101 (365)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCCceEEEeecCCCCCCceE
Confidence 344567876 56668999999975
No 449
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=49.59 E-value=8.4 Score=41.77 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=19.3
Q ss_pred HHHHHhcCCcE--EEEecCCCCcchhc
Q psy7557 106 AWPILMSGHDM--IGIAQTGTGKTFAF 130 (936)
Q Consensus 106 ai~~~~~g~d~--l~~apTGsGKT~~~ 130 (936)
.+..++.|.|+ +..|+||||||.+.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 55667889875 45589999999863
No 450
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=49.57 E-value=5.8 Score=37.91 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=13.9
Q ss_pred CcEEEEecCCCCcchh
Q psy7557 634 HDMIGIAQTGTGKTFA 649 (936)
Q Consensus 634 ~d~i~~apTGsGKTl~ 649 (936)
|-++++||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999974
No 451
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=49.51 E-value=4.5 Score=43.60 Aligned_cols=20 Identities=20% Similarity=0.162 Sum_probs=16.5
Q ss_pred HhcCCcEEEEecCCCCcchh
Q psy7557 110 LMSGHDMIGIAQTGTGKTFA 129 (936)
Q Consensus 110 ~~~g~d~l~~apTGsGKT~~ 129 (936)
+..|..++++||||||||..
T Consensus 133 ~~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHH
T ss_pred hcCCCEEEEECCCCCCHHHH
Confidence 34567789999999999985
No 452
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.46 E-value=5.6 Score=43.00 Aligned_cols=55 Identities=15% Similarity=0.281 Sum_probs=29.8
Q ss_pred CcccChHHhhcCCHHHHHHHHhC---CCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhc
Q psy7557 72 NPVTSFKQAFQHYPEILRQLENL---SFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 72 ~p~~~f~~~~~~~~~l~~~l~~~---g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~ 130 (936)
.|-.+|++.-++ ....+.|+.. -+..|--++... +.--+.+|+.||.|+|||+.+
T Consensus 142 ~p~v~~~dIgGl-~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 142 VPDSTYDMVGGL-TKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp SCSCCGGGSCSC-HHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHHH
T ss_pred CCCCCHHHhCCH-HHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHHH
Confidence 355688885444 4444444432 011121111111 112378999999999999853
No 453
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=49.45 E-value=8.5 Score=40.78 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=19.3
Q ss_pred HHHhhhcCCc--EEEEecCCCCcchhh
Q psy7557 626 AWPILMSGHD--MIGIAQTGTGKTFAF 650 (936)
Q Consensus 626 ai~~~l~g~d--~i~~apTGsGKTl~~ 650 (936)
.+..++.|.| +++.++||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 5667788887 456689999999753
No 454
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=49.38 E-value=8.3 Score=40.88 Aligned_cols=24 Identities=29% Similarity=0.619 Sum_probs=17.2
Q ss_pred HHhhhcCCc--EEEEecCCCCcchhh
Q psy7557 627 WPILMSGHD--MIGIAQTGTGKTFAF 650 (936)
Q Consensus 627 i~~~l~g~d--~i~~apTGsGKTl~~ 650 (936)
+..++.|.| +++.++||||||...
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEe
Confidence 344567776 556689999999753
No 455
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=49.37 E-value=8.6 Score=40.89 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=17.6
Q ss_pred HHHhhhcCCc--EEEEecCCCCcchh
Q psy7557 626 AWPILMSGHD--MIGIAQTGTGKTFA 649 (936)
Q Consensus 626 ai~~~l~g~d--~i~~apTGsGKTl~ 649 (936)
.+..++.|.| +++.++||||||..
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceE
Confidence 3455667877 45668999999965
No 456
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=49.34 E-value=8.3 Score=40.94 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=19.5
Q ss_pred HHHhhhcCCcE--EEEecCCCCcchhh
Q psy7557 626 AWPILMSGHDM--IGIAQTGTGKTFAF 650 (936)
Q Consensus 626 ai~~~l~g~d~--i~~apTGsGKTl~~ 650 (936)
.+..++.|.|. ++.++||||||...
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 56777889874 55689999999754
No 457
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=49.28 E-value=8.7 Score=40.85 Aligned_cols=25 Identities=24% Similarity=0.517 Sum_probs=18.3
Q ss_pred HHHhhhcCCc--EEEEecCCCCcchhh
Q psy7557 626 AWPILMSGHD--MIGIAQTGTGKTFAF 650 (936)
Q Consensus 626 ai~~~l~g~d--~i~~apTGsGKTl~~ 650 (936)
.+..++.|.| +++.++||||||...
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 3455668877 466689999999753
No 458
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=49.26 E-value=5.5 Score=41.98 Aligned_cols=17 Identities=24% Similarity=0.491 Sum_probs=15.1
Q ss_pred CcEEEEecCCCCcchhc
Q psy7557 114 HDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 114 ~d~l~~apTGsGKT~~~ 130 (936)
+.+++.||+|+|||..+
T Consensus 46 ~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLA 62 (322)
T ss_dssp SEEEEESSSSSCHHHHH
T ss_pred ceEEEECCCCccHHHHH
Confidence 67999999999999854
No 459
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=49.23 E-value=5.9 Score=38.24 Aligned_cols=19 Identities=32% Similarity=0.289 Sum_probs=15.5
Q ss_pred cCCcEEEEecCCCCcchhc
Q psy7557 112 SGHDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 112 ~g~d~l~~apTGsGKT~~~ 130 (936)
.|.-+.++||+|||||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4666788899999999854
No 460
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=49.14 E-value=8.4 Score=41.05 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=17.7
Q ss_pred HHHhhhcCCc--EEEEecCCCCcchh
Q psy7557 626 AWPILMSGHD--MIGIAQTGTGKTFA 649 (936)
Q Consensus 626 ai~~~l~g~d--~i~~apTGsGKTl~ 649 (936)
.+..++.|.| +++.++||||||..
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyT 105 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFT 105 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceE
Confidence 3445667876 55668999999965
No 461
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=49.13 E-value=6.3 Score=38.73 Aligned_cols=19 Identities=16% Similarity=0.095 Sum_probs=15.8
Q ss_pred hcCCcEEEEecCCCCcchh
Q psy7557 111 MSGHDMIGIAQTGTGKTFA 129 (936)
Q Consensus 111 ~~g~d~l~~apTGsGKT~~ 129 (936)
..|+-+.++||+|+|||..
T Consensus 21 ~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp -CCCCEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4677889999999999984
No 462
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=49.11 E-value=5 Score=42.86 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=14.9
Q ss_pred cCCcEEEEecCCCCcchh
Q psy7557 112 SGHDMIGIAQTGTGKTFA 129 (936)
Q Consensus 112 ~g~d~l~~apTGsGKT~~ 129 (936)
.+.-++++||||||||..
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 445788899999999984
No 463
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=49.03 E-value=8.3 Score=41.33 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=17.3
Q ss_pred HHHHhcCCcE--EEEecCCCCcchh
Q psy7557 107 WPILMSGHDM--IGIAQTGTGKTFA 129 (936)
Q Consensus 107 i~~~~~g~d~--l~~apTGsGKT~~ 129 (936)
+..++.|.|. +..|+||||||.+
T Consensus 93 v~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 93 IEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCceEEEEeecCCCCCccee
Confidence 3456788874 5559999999976
No 464
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=48.86 E-value=8.4 Score=40.81 Aligned_cols=23 Identities=30% Similarity=0.648 Sum_probs=17.2
Q ss_pred HHhhhcCCc--EEEEecCCCCcchh
Q psy7557 627 WPILMSGHD--MIGIAQTGTGKTFA 649 (936)
Q Consensus 627 i~~~l~g~d--~i~~apTGsGKTl~ 649 (936)
+..++.|.| +++.++||||||..
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyT 100 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYT 100 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHhhcCeeEEEecccCCCceEe
Confidence 445667876 45668999999975
No 465
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=48.85 E-value=16 Score=38.36 Aligned_cols=59 Identities=12% Similarity=0.076 Sum_probs=32.2
Q ss_pred cCCcEEEEecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHH-HHHHHHHHHhc
Q psy7557 632 SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTREL-ATQIEREVNKI 693 (936)
Q Consensus 632 ~g~d~i~~apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~L-a~Q~~~~~~~~ 693 (936)
.|.-+++.||+|+|||..++--+. ..... . ...+.+..++|+.-...+ ..++.+.++.+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~-~~~~~-~-~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSV-NVQLP-P-EKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH-HTTSC-G-GGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHH-HHhcc-c-ccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 457789999999999975432222 21110 0 001125678888754332 34455555554
No 466
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=48.78 E-value=5.7 Score=40.14 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=15.5
Q ss_pred CCcEEEEecCCCCcchhhH
Q psy7557 633 GHDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 633 g~d~i~~apTGsGKTl~~~ 651 (936)
.+.+++.+|+|+|||..+-
T Consensus 45 ~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 3579999999999997543
No 467
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=48.78 E-value=6.6 Score=40.87 Aligned_cols=18 Identities=28% Similarity=0.248 Sum_probs=15.2
Q ss_pred CcEEEEecCCCCcchhch
Q psy7557 114 HDMIGIAQTGTGKTFAFL 131 (936)
Q Consensus 114 ~d~l~~apTGsGKT~~~~ 131 (936)
..+++.||+|+|||..+-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 368999999999998653
No 468
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=48.77 E-value=8.5 Score=40.46 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=19.0
Q ss_pred HHHhhhcCCc--EEEEecCCCCcchhh
Q psy7557 626 AWPILMSGHD--MIGIAQTGTGKTFAF 650 (936)
Q Consensus 626 ai~~~l~g~d--~i~~apTGsGKTl~~ 650 (936)
.+..++.|.| +++.++||||||...
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 5566778887 556689999999653
No 469
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=48.75 E-value=8.3 Score=40.99 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=17.0
Q ss_pred HHhhhcCCc--EEEEecCCCCcchh
Q psy7557 627 WPILMSGHD--MIGIAQTGTGKTFA 649 (936)
Q Consensus 627 i~~~l~g~d--~i~~apTGsGKTl~ 649 (936)
+..++.|.| +++.++||||||..
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyT 97 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYT 97 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceE
Confidence 344567876 56668999999965
No 470
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.72 E-value=3.5 Score=45.35 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=15.5
Q ss_pred CCcEEEEecCCCCcchhc
Q psy7557 113 GHDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 113 g~d~l~~apTGsGKT~~~ 130 (936)
-+.+|+.||.|+|||+.+
T Consensus 243 prGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CSEEEECSCTTSSHHHHH
T ss_pred CCceEeeCCCCCcHHHHH
Confidence 378999999999999753
No 471
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=48.65 E-value=6.1 Score=37.54 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=15.7
Q ss_pred cCCcEEEEecCCCCcchhhH
Q psy7557 632 SGHDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 632 ~g~d~i~~apTGsGKTl~~~ 651 (936)
.+.-+++.++.|||||...-
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35678999999999998543
No 472
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=48.61 E-value=5.7 Score=41.17 Aligned_cols=17 Identities=24% Similarity=0.194 Sum_probs=14.5
Q ss_pred CcEEEEecCCCCcchhc
Q psy7557 114 HDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 114 ~d~l~~apTGsGKT~~~ 130 (936)
+.+++.||+|+|||..+
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 56888999999999854
No 473
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=48.53 E-value=8.4 Score=40.97 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=17.2
Q ss_pred HHhhhcCCc--EEEEecCCCCcchh
Q psy7557 627 WPILMSGHD--MIGIAQTGTGKTFA 649 (936)
Q Consensus 627 i~~~l~g~d--~i~~apTGsGKTl~ 649 (936)
+..++.|.| +++.++||||||..
T Consensus 98 v~~~l~G~n~tifAYGqTGSGKTyT 122 (355)
T 3lre_A 98 LRSFLNGYNCTVLAYGATGAGKTHT 122 (355)
T ss_dssp HHHHTTTCCEEEEEECCTTSSHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCceee
Confidence 445667876 56668999999975
No 474
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=48.47 E-value=6.1 Score=37.54 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=16.7
Q ss_pred cCCcEEEEecCCCCcchhhH
Q psy7557 632 SGHDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 632 ~g~d~i~~apTGsGKTl~~~ 651 (936)
.+..++++++.|||||.+.-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46789999999999998644
No 475
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=48.46 E-value=5.9 Score=42.76 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=12.6
Q ss_pred EEEEecCCCCcchhc
Q psy7557 116 MIGIAQTGTGKTFAF 130 (936)
Q Consensus 116 ~l~~apTGsGKT~~~ 130 (936)
++++||||||||..+
T Consensus 5 i~i~GptgsGKttla 19 (409)
T 3eph_A 5 IVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEECSSSSHHHHH
T ss_pred EEEECcchhhHHHHH
Confidence 577899999999754
No 476
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=48.43 E-value=6.4 Score=37.46 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=13.7
Q ss_pred CcEEEEecCCCCcchhc
Q psy7557 114 HDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 114 ~d~l~~apTGsGKT~~~ 130 (936)
+=+.++||+|||||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 44678899999999853
No 477
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=48.36 E-value=8.9 Score=41.57 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=19.2
Q ss_pred HHHhhhcCCcE--EEEecCCCCcchhh
Q psy7557 626 AWPILMSGHDM--IGIAQTGTGKTFAF 650 (936)
Q Consensus 626 ai~~~l~g~d~--i~~apTGsGKTl~~ 650 (936)
.+..++.|.|+ ++.++||||||...
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 56667788874 55689999999763
No 478
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=48.30 E-value=6.6 Score=36.67 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=15.6
Q ss_pred CCcEEEEecCCCCcchhhH
Q psy7557 633 GHDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 633 g~d~i~~apTGsGKTl~~~ 651 (936)
+..+.+.+|.|||||...-
T Consensus 4 ~~~i~l~G~~GsGKSTl~~ 22 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGR 22 (173)
T ss_dssp CCCEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4678999999999997543
No 479
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=48.21 E-value=70 Score=26.41 Aligned_cols=103 Identities=21% Similarity=0.307 Sum_probs=66.3
Q ss_pred EEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEecCCCCcc
Q psy7557 325 VMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIE 404 (936)
Q Consensus 325 ~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~ 404 (936)
.+||...-.-...+...++..|..+..++++.....|..-++.|.... +|+..+.- --|+-.++.
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqg-------------vdvrtved--kedfrenir 69 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQG-------------VDVRTVED--KEDFRENIR 69 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTT-------------CEEEECCS--HHHHHHHHH
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcC-------------Cceeeecc--HHHHHHHHH
Confidence 467777777788888899999999999999999999999999998743 33311100 001111222
Q ss_pred ccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHhhcCCccc
Q psy7557 405 EYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEGGHESY 449 (936)
Q Consensus 405 ~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 449 (936)
..+.|. ..-..+++++.+|....+++++-.++.|.+++
T Consensus 70 eiwery-------pqldvvvivttddkewikdfieeakergvevf 107 (162)
T 2l82_A 70 EIWERY-------PQLDVVVIVTTDDKEWIKDFIEEAKERGVEVF 107 (162)
T ss_dssp HHHHHC-------TTCCEEEEEECCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHhC-------CCCcEEEEEecCcHHHHHHHHHHHHhcCcEEE
Confidence 222211 12345666777777777777777766665554
No 480
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=48.17 E-value=8 Score=41.30 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=18.8
Q ss_pred HHHhhhcCCc--EEEEecCCCCcchhh
Q psy7557 626 AWPILMSGHD--MIGIAQTGTGKTFAF 650 (936)
Q Consensus 626 ai~~~l~g~d--~i~~apTGsGKTl~~ 650 (936)
.+..++.|.| +++.++||||||...
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 5566778887 455689999999753
No 481
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=48.11 E-value=94 Score=32.78 Aligned_cols=16 Identities=25% Similarity=0.208 Sum_probs=13.5
Q ss_pred cEEEEecCCCCcchhc
Q psy7557 115 DMIGIAQTGTGKTFAF 130 (936)
Q Consensus 115 d~l~~apTGsGKT~~~ 130 (936)
.+.++|++|+|||..+
T Consensus 81 ~I~i~G~~G~GKSTl~ 96 (355)
T 3p32_A 81 RVGITGVPGVGKSTAI 96 (355)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999854
No 482
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=48.09 E-value=8.3 Score=41.87 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=19.4
Q ss_pred HHHHHhcCCcE--EEEecCCCCcchhc
Q psy7557 106 AWPILMSGHDM--IGIAQTGTGKTFAF 130 (936)
Q Consensus 106 ai~~~~~g~d~--l~~apTGsGKT~~~ 130 (936)
.+..++.|.|. +..|+||||||.+.
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 56677889875 45589999999863
No 483
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=48.05 E-value=6.4 Score=42.46 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=16.2
Q ss_pred CCcEEEEecCCCCcchhch
Q psy7557 113 GHDMIGIAQTGTGKTFAFL 131 (936)
Q Consensus 113 g~d~l~~apTGsGKT~~~~ 131 (936)
..++++.||+|+|||..+-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4689999999999998653
No 484
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=47.87 E-value=8.9 Score=41.17 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=18.3
Q ss_pred HHHHHhcCCc--EEEEecCCCCcchhc
Q psy7557 106 AWPILMSGHD--MIGIAQTGTGKTFAF 130 (936)
Q Consensus 106 ai~~~~~g~d--~l~~apTGsGKT~~~ 130 (936)
.+..++.|.| ++..|+||||||.+.
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 3445678877 455589999999864
No 485
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=47.78 E-value=9 Score=40.92 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=16.9
Q ss_pred HHhhhcCCc--EEEEecCCCCcchh
Q psy7557 627 WPILMSGHD--MIGIAQTGTGKTFA 649 (936)
Q Consensus 627 i~~~l~g~d--~i~~apTGsGKTl~ 649 (936)
+..++.|.| +++.++||||||..
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyT 106 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYT 106 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhcCCeeEEEEeCCCCCCCceE
Confidence 445567876 55668999999965
No 486
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=47.77 E-value=5.8 Score=37.82 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=16.3
Q ss_pred hcCCcEEEEecCCCCcchhh
Q psy7557 631 MSGHDMIGIAQTGTGKTFAF 650 (936)
Q Consensus 631 l~g~d~i~~apTGsGKTl~~ 650 (936)
..|.-+++.+|.|||||..+
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 35677899999999999743
No 487
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=47.45 E-value=14 Score=38.24 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=16.2
Q ss_pred cCCcEEEEecCCCCcchhchH
Q psy7557 112 SGHDMIGIAQTGTGKTFAFLL 132 (936)
Q Consensus 112 ~g~d~l~~apTGsGKT~~~~l 132 (936)
.|+-+.++||+|+|||.....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~ 124 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAK 124 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 356688889999999986543
No 488
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.39 E-value=6.2 Score=42.67 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=15.5
Q ss_pred CCcEEEEecCCCCcchhh
Q psy7557 633 GHDMIGIAQTGTGKTFAF 650 (936)
Q Consensus 633 g~d~i~~apTGsGKTl~~ 650 (936)
-+.+|+.||+|+|||+.+
T Consensus 182 prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCCEEEESCSSSSHHHHH
T ss_pred CCceEEeCCCCCCHHHHH
Confidence 368999999999999754
No 489
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=47.15 E-value=43 Score=37.36 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=14.4
Q ss_pred CcEEEEecCCCCcchhhH
Q psy7557 634 HDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 634 ~d~i~~apTGsGKTl~~~ 651 (936)
+.+++++++|+|||..+.
T Consensus 102 ~vI~ivG~~GvGKTTl~~ 119 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCS 119 (504)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 367888999999997544
No 490
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=47.11 E-value=6.7 Score=41.96 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=15.9
Q ss_pred CCcEEEEecCCCCcchhch
Q psy7557 113 GHDMIGIAQTGTGKTFAFL 131 (936)
Q Consensus 113 g~d~l~~apTGsGKT~~~~ 131 (936)
.+.+++.||+|+|||..+-
T Consensus 84 ~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCEEEECSTTSCHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3679999999999998643
No 491
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=46.98 E-value=8.1 Score=41.49 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=16.9
Q ss_pred HHHhcCCcE--EEEecCCCCcchhc
Q psy7557 108 PILMSGHDM--IGIAQTGTGKTFAF 130 (936)
Q Consensus 108 ~~~~~g~d~--l~~apTGsGKT~~~ 130 (936)
..++.|.|. +..|+||||||.+.
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHhhcCceeeEeeecCCCCCCCeEe
Confidence 346678874 45599999999763
No 492
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=46.96 E-value=6.3 Score=36.67 Aligned_cols=17 Identities=12% Similarity=-0.250 Sum_probs=13.9
Q ss_pred cEEEEecCCCCcchhch
Q psy7557 115 DMIGIAQTGTGKTFAFL 131 (936)
Q Consensus 115 d~l~~apTGsGKT~~~~ 131 (936)
-++++|+.|||||...-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46788999999998643
No 493
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=46.71 E-value=6.5 Score=41.21 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=15.6
Q ss_pred CCcEEEEecCCCCcchhc
Q psy7557 113 GHDMIGIAQTGTGKTFAF 130 (936)
Q Consensus 113 g~d~l~~apTGsGKT~~~ 130 (936)
...++++||+|+|||..+
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 368999999999999854
No 494
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=46.68 E-value=9.1 Score=41.00 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=17.0
Q ss_pred HHhhhcCCc--EEEEecCCCCcchh
Q psy7557 627 WPILMSGHD--MIGIAQTGTGKTFA 649 (936)
Q Consensus 627 i~~~l~g~d--~i~~apTGsGKTl~ 649 (936)
+..++.|.| +++.++||||||..
T Consensus 93 v~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 93 IEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCceEEEEeecCCCCCccee
Confidence 344567876 55668999999965
No 495
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=46.59 E-value=10 Score=37.23 Aligned_cols=19 Identities=32% Similarity=0.326 Sum_probs=15.6
Q ss_pred cCCcEEEEecCCCCcchhh
Q psy7557 632 SGHDMIGIAQTGTGKTFAF 650 (936)
Q Consensus 632 ~g~d~i~~apTGsGKTl~~ 650 (936)
.|.-+++.+|+|+|||...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 4677889999999999643
No 496
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=46.46 E-value=6.5 Score=36.93 Aligned_cols=16 Identities=25% Similarity=0.291 Sum_probs=13.4
Q ss_pred cEEEEecCCCCcchhc
Q psy7557 115 DMIGIAQTGTGKTFAF 130 (936)
Q Consensus 115 d~l~~apTGsGKT~~~ 130 (936)
-++++|+.|||||..+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3678899999999854
No 497
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=46.45 E-value=6.5 Score=43.75 Aligned_cols=19 Identities=37% Similarity=0.459 Sum_probs=16.2
Q ss_pred CCcEEEEecCCCCcchhch
Q psy7557 113 GHDMIGIAQTGTGKTFAFL 131 (936)
Q Consensus 113 g~d~l~~apTGsGKT~~~~ 131 (936)
++.+++.||+|+|||..+-
T Consensus 63 ~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 4689999999999998653
No 498
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=46.38 E-value=6.5 Score=41.37 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=15.4
Q ss_pred CcEEEEecCCCCcchhhH
Q psy7557 634 HDMIGIAQTGTGKTFAFL 651 (936)
Q Consensus 634 ~d~i~~apTGsGKTl~~~ 651 (936)
+.+++.||+|+|||..+-
T Consensus 46 ~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp SEEEEESSSSSCHHHHHH
T ss_pred ceEEEECCCCccHHHHHH
Confidence 689999999999997543
No 499
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=46.37 E-value=10 Score=37.19 Aligned_cols=20 Identities=35% Similarity=0.376 Sum_probs=16.0
Q ss_pred cCCcEEEEecCCCCcchhch
Q psy7557 112 SGHDMIGIAQTGTGKTFAFL 131 (936)
Q Consensus 112 ~g~d~l~~apTGsGKT~~~~ 131 (936)
.|.-+++.||+|+|||..+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 46678889999999997543
No 500
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=46.31 E-value=9.4 Score=41.00 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=17.7
Q ss_pred HHhhhcCCc--EEEEecCCCCcchhh
Q psy7557 627 WPILMSGHD--MIGIAQTGTGKTFAF 650 (936)
Q Consensus 627 i~~~l~g~d--~i~~apTGsGKTl~~ 650 (936)
+..++.|.| +++.++||||||...
T Consensus 127 v~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 127 VQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHhcCCceEEEEecCCCCCCCeEe
Confidence 445667876 566689999999763
Done!