Your job contains 1 sequence.
>psy7557
MEELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDG
QIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIA
QTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKA
VCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGF
EPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKII
ILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQED
REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSG
ESITLMTRKDWSHAHEIIPILEEGGHESYMIWRRDSRIALHVILEGGEEVVEEEEGGEDG
MEILVGVDLEVVMEGEEEGEVAIQMINKIDLGRHIDPEPTMEELMALSDRKERDKWAREP
KIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQA
FQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHL
QTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREGC
HILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMT
SATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDE
ERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATD
VASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy7557
(936 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0037549 - symbol:CG7878 species:7227 "Drosophila m... 1229 4.3e-125 1
ZFIN|ZDB-GENE-080204-77 - symbol:ddx43 "DEAD (Asp-Glu-Ala... 1180 6.7e-120 1
UNIPROTKB|F1NVJ6 - symbol:DDX43 "Uncharacterized protein"... 1143 5.6e-116 1
UNIPROTKB|E1BII7 - symbol:DDX43 "Uncharacterized protein"... 1103 9.7e-112 1
UNIPROTKB|F1S0I6 - symbol:DDX43 "Uncharacterized protein"... 1102 1.2e-111 1
UNIPROTKB|F1SQ03 - symbol:LOC100524536 "Uncharacterized p... 1091 1.8e-110 1
UNIPROTKB|G3MYF0 - symbol:LOC100300937 "Uncharacterized p... 1085 7.8e-110 1
UNIPROTKB|I3LHW0 - symbol:I3LHW0 "Uncharacterized protein... 1079 3.4e-109 1
UNIPROTKB|Q9NXZ2 - symbol:DDX43 "Probable ATP-dependent R... 1078 4.3e-109 1
UNIPROTKB|F1NQ09 - symbol:DDX43 "Uncharacterized protein"... 1043 2.2e-105 1
UNIPROTKB|Q86TM3 - symbol:DDX53 "Probable ATP-dependent R... 999 1.0e-100 1
CGD|CAL0003204 - symbol:DBP2 species:5476 "Candida albica... 903 1.5e-90 1
ASPGD|ASPL0000006660 - symbol:AN5931 species:162425 "Emer... 887 7.5e-89 1
TAIR|locus:2035741 - symbol:RH20 "RNA helicase 20" specie... 886 9.6e-89 1
WB|WBGene00013214 - symbol:Y54G11A.3 species:6239 "Caenor... 883 2.0e-88 1
UNIPROTKB|A4QSS5 - symbol:DBP2 "ATP-dependent RNA helicas... 882 2.5e-88 1
POMBASE|SPBP8B7.16c - symbol:dbp2 "ATP-dependent RNA heli... 880 4.1e-88 1
DICTYBASE|DDB_G0293168 - symbol:ddx17 "DEAD/DEAH box heli... 867 9.9e-87 1
UNIPROTKB|E1C2R8 - symbol:DDX17 "Uncharacterized protein"... 863 2.6e-86 1
TAIR|locus:2162022 - symbol:AT5G63120 species:3702 "Arabi... 860 5.4e-86 1
UNIPROTKB|F1PID8 - symbol:DDX17 "Uncharacterized protein"... 854 2.4e-85 1
UNIPROTKB|H3BLZ8 - symbol:DDX17 "Probable ATP-dependent R... 854 2.4e-85 1
UNIPROTKB|Q92841 - symbol:DDX17 "Probable ATP-dependent R... 854 2.4e-85 1
UNIPROTKB|F1SKQ0 - symbol:DDX17 "Uncharacterized protein"... 854 2.4e-85 1
UNIPROTKB|A7E307 - symbol:DDX17 "Uncharacterized protein"... 854 2.4e-85 1
UNIPROTKB|E2RJ60 - symbol:DDX17 "Uncharacterized protein"... 854 2.4e-85 1
MGI|MGI:1914290 - symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) bo... 854 2.4e-85 1
ZFIN|ZDB-GENE-030131-925 - symbol:ddx5 "DEAD (Asp-Glu-Ala... 854 2.4e-85 1
FB|FBgn0003261 - symbol:Rm62 "Rm62" species:7227 "Drosoph... 846 1.7e-84 1
ZFIN|ZDB-GENE-030131-18 - symbol:si:dkey-156n14.5 "si:dke... 846 1.7e-84 1
UNIPROTKB|C9JMU5 - symbol:DDX17 "Probable ATP-dependent R... 843 3.4e-84 1
UNIPROTKB|F1NM08 - symbol:DDX5 "Uncharacterized protein" ... 837 1.5e-83 1
UNIPROTKB|F1NXI3 - symbol:DDX5 "Uncharacterized protein" ... 837 1.5e-83 1
TAIR|locus:2084178 - symbol:DRH1 "DEAD box RNA helicase 1... 835 2.4e-83 1
FB|FBgn0035720 - symbol:CG10077 species:7227 "Drosophila ... 832 5.0e-83 1
SGD|S000005056 - symbol:DBP2 "ATP-dependent RNA helicase ... 830 8.2e-83 1
UNIPROTKB|F1MBQ8 - symbol:DDX5 "Uncharacterized protein" ... 826 2.2e-82 1
UNIPROTKB|F1PEA6 - symbol:DDX5 "Uncharacterized protein" ... 826 2.2e-82 1
UNIPROTKB|J3KTA4 - symbol:DDX5 "Probable ATP-dependent RN... 826 2.2e-82 1
UNIPROTKB|P17844 - symbol:DDX5 "Probable ATP-dependent RN... 826 2.2e-82 1
UNIPROTKB|Q5R4I9 - symbol:DDX5 "Probable ATP-dependent RN... 826 2.2e-82 1
GENEDB_PFALCIPARUM|PF14_0437 - symbol:PF14_0437 "helicase... 825 2.8e-82 1
UNIPROTKB|Q8IL13 - symbol:PF14_0437 "Helicase, putative" ... 825 2.8e-82 1
MGI|MGI:105037 - symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box ... 823 4.5e-82 1
RGD|619906 - symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box heli... 823 4.5e-82 1
UNIPROTKB|Q4R6M5 - symbol:DDX5 "Probable ATP-dependent RN... 822 5.8e-82 1
RGD|708480 - symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box pol... 757 7.3e-82 3
UNIPROTKB|Q62780 - symbol:Ddx46 "Probable ATP-dependent R... 757 7.3e-82 3
UNIPROTKB|A5A6J2 - symbol:DDX5 "Probable ATP-dependent RN... 819 1.2e-81 1
TAIR|locus:2081061 - symbol:AT3G06480 species:3702 "Arabi... 818 1.5e-81 1
FB|FBgn0029979 - symbol:CG10777 species:7227 "Drosophila ... 811 8.5e-81 1
UNIPROTKB|E1BSC0 - symbol:DDX46 "Uncharacterized protein"... 749 1.9e-79 3
WB|WBGene00010260 - symbol:F58E10.3 species:6239 "Caenorh... 791 1.1e-78 1
TAIR|locus:2222617 - symbol:AT5G14610 species:3702 "Arabi... 788 2.3e-78 1
MGI|MGI:1920895 - symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) bo... 757 1.5e-77 2
UNIPROTKB|F1PK90 - symbol:DDX46 "Uncharacterized protein"... 757 1.5e-77 2
UNIPROTKB|Q7L014 - symbol:DDX46 "Probable ATP-dependent R... 757 1.5e-77 2
UNIPROTKB|I3LR20 - symbol:DDX46 "Uncharacterized protein"... 757 1.5e-77 2
UNIPROTKB|F1MX40 - symbol:DDX46 "Uncharacterized protein"... 755 2.5e-77 2
ZFIN|ZDB-GENE-030131-667 - symbol:ddx46 "DEAD (Asp-Glu-Al... 766 5.0e-76 1
UNIPROTKB|E9PT29 - symbol:Ddx17 "Protein Ddx17" species:1... 756 5.7e-75 1
TAIR|locus:2034481 - symbol:STRS1 "STRESS RESPONSE SUPPRE... 747 5.1e-74 1
FB|FBgn0030631 - symbol:CG6227 species:7227 "Drosophila m... 752 9.3e-74 1
ZFIN|ZDB-GENE-050706-53 - symbol:ddx42 "DEAD (Asp-Glu-Ala... 711 1.8e-72 2
UNIPROTKB|A4RN46 - symbol:PRP5 "Pre-mRNA-processing ATP-d... 727 6.7e-72 1
DICTYBASE|DDB_G0288501 - symbol:ddx42 "DEAD/DEAH box heli... 726 8.6e-72 1
TAIR|locus:2037416 - symbol:RCF1 "regulator of CBF gene e... 727 3.6e-71 1
UNIPROTKB|E1BJD2 - symbol:DDX42 "Uncharacterized protein"... 717 7.7e-71 1
ASPGD|ASPL0000055571 - symbol:AN1266 species:162425 "Emer... 723 1.0e-70 1
ZFIN|ZDB-GENE-980526-150 - symbol:pl10 "pl10" species:795... 574 1.4e-70 2
TAIR|locus:2065215 - symbol:AT2G47330 species:3702 "Arabi... 713 2.1e-70 1
MGI|MGI:1919297 - symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) bo... 713 2.1e-70 1
POMBASE|SPCC1795.11 - symbol:sum3 "translation initiation... 712 2.6e-70 1
TAIR|locus:2076351 - symbol:AT3G58510 species:3702 "Arabi... 711 3.3e-70 1
UNIPROTKB|E2RFF1 - symbol:DDX42 "Uncharacterized protein"... 710 4.3e-70 1
UNIPROTKB|Q86XP3 - symbol:DDX42 "ATP-dependent RNA helica... 710 4.3e-70 1
WB|WBGene00018776 - symbol:F53H1.1 species:6239 "Caenorha... 709 5.5e-70 1
UNIPROTKB|Q5R7D1 - symbol:DDX42 "ATP-dependent RNA helica... 708 7.0e-70 1
POMBASE|SPCC10H11.01 - symbol:prp11 "ATP-dependent RNA he... 709 8.5e-70 1
RGD|1304909 - symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box po... 707 8.9e-70 1
CGD|CAL0004832 - symbol:orf19.7392 species:5476 "Candida ... 706 1.1e-69 1
TAIR|locus:2041549 - symbol:AT2G42520 species:3702 "Arabi... 706 1.1e-69 1
UNIPROTKB|Q5F485 - symbol:DDX42 "ATP-dependent RNA helica... 703 2.4e-69 1
FB|FBgn0036104 - symbol:CG6418 species:7227 "Drosophila m... 702 3.0e-69 1
UNIPROTKB|F1NJ40 - symbol:DDX42 "ATP-dependent RNA helica... 702 3.0e-69 1
UNIPROTKB|F1P0H1 - symbol:DDX42 "ATP-dependent RNA helica... 702 3.0e-69 1
SGD|S000006040 - symbol:DBP1 "Putative ATP-dependent RNA ... 701 3.8e-69 1
SGD|S000003046 - symbol:DBP3 "RNA-Dependent ATPase, membe... 692 3.5e-68 1
SGD|S000005730 - symbol:DED1 "ATP-dependent DEAD (Asp-Glu... 690 5.6e-68 1
DICTYBASE|DDB_G0281925 - symbol:DDB_G0281925 "DEAD/DEAH b... 686 1.5e-67 1
CGD|CAL0005460 - symbol:DBP3 species:5476 "Candida albica... 685 1.9e-67 1
POMBASE|SPBC17D1.06 - symbol:dbp3 "ATP-dependent RNA heli... 679 8.2e-67 1
UNIPROTKB|F1RSJ7 - symbol:DDX42 "Uncharacterized protein"... 678 1.1e-66 1
DICTYBASE|DDB_G0275443 - symbol:helB1 "putative RNA splic... 685 1.3e-66 1
GENEDB_PFALCIPARUM|PFL1310c - symbol:PFL1310c "ATP-depend... 547 1.4e-66 2
TAIR|locus:2076436 - symbol:AT3G58570 species:3702 "Arabi... 674 2.8e-66 1
ZFIN|ZDB-GENE-990415-272 - symbol:vasa "vasa homolog" spe... 652 3.7e-66 2
CGD|CAL0005725 - symbol:PRP5 species:5476 "Candida albica... 672 4.5e-66 1
UNIPROTKB|Q5ADL0 - symbol:PRP5 "Pre-mRNA-processing ATP-d... 672 4.5e-66 1
TIGR_CMR|GSU_0914 - symbol:GSU_0914 "ATP-dependent RNA he... 672 4.5e-66 1
WARNING: Descriptions of 866 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0037549 [details] [associations]
symbol:CG7878 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006200 GO:GO:0003723 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
HSSP:P10081 OMA:VLDITHV EMBL:AY051831 RefSeq:NP_649767.1
UniGene:Dm.1098 SMR:Q7K4L8 IntAct:Q7K4L8 EnsemblMetazoa:FBtr0113205
GeneID:40959 KEGG:dme:Dmel_CG7878 UCSC:CG7878-RA
FlyBase:FBgn0037549 InParanoid:Q7K4L8 OrthoDB:EOG47D7XG
GenomeRNAi:40959 NextBio:20818674 Uniprot:Q7K4L8
Length = 703
Score = 1229 (437.7 bits), Expect = 4.3e-125, P = 4.3e-125
Identities = 237/435 (54%), Positives = 312/435 (71%)
Query: 15 KWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPV 74
+W++ P + KN YKE PEVAN+T ++E R++NN I+VS V + + +P IPNPV
Sbjct: 224 RWSKCPPLTKNFYKEAPEVANLTKSEIERIREENNKITVSYVFEPKEGETSPP--IPNPV 281
Query: 75 TSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPA 134
+F+Q F YP++L ++ + F+ PSPIQ+QAWPIL+ GHDMIGIAQTGTGKT AFLLP
Sbjct: 282 WTFEQCFAEYPDMLEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPG 341
Query: 135 LIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLE 194
+IHT Q+TP R G +VLV+APTRELA QIE EV K ++G+KAVCVYGG Q+
Sbjct: 342 MIHTEYQSTPRGTRGGANVLVLAPTRELALQIEMEVKKYSFRGMKAVCVYGGGNRNMQIS 401
Query: 195 KIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPN 254
+ G I+I TPGRLND + ID+ ++++VLDEADRMLD+GFEPQI K + I P+
Sbjct: 402 DLERGAEIIICTPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPD 461
Query: 255 RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDED-EKKDWLME 313
RQT+MTSATW V+R+A+ YM NP++V VGSLDLAATH+V Q I ++++D +K + +
Sbjct: 462 RQTIMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQIIKLMEDDMDKFNTITS 521
Query: 314 FFDNMDEERDKVMVFMGRKASVSAMSSDLACQ-YRKSCSLYGDLSQEDREIALEDITSGY 372
F NM DK+++F GRK +SS+L + C ++G+ Q DRE A+ DI SG
Sbjct: 522 FVKNMSST-DKIIIFCGRKVRADDLSSELTLDGFMTQC-IHGNRDQMDREQAIADIKSGV 579
Query: 373 ARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWS 432
RI VATDVASRGLD+ D+THVINYDFP +IEEYVHRVGRTGRAG+ G SI+ TR+DW+
Sbjct: 580 VRILVATDVASRGLDIEDITHVINYDFPHNIEEYVHRVGRTGRAGRQGTSISFFTREDWA 639
Query: 433 HAHEIIPILEEGGHE 447
A E+I IL+E E
Sbjct: 640 MAKELIEILQEAEQE 654
Score = 1141 (406.7 bits), Expect = 9.1e-116, P = 9.1e-116
Identities = 220/402 (54%), Positives = 289/402 (71%)
Query: 535 KWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPV 594
+W++ P + KN YKE PEVAN+T ++E R++NN I+VS V + + +P IPNPV
Sbjct: 224 RWSKCPPLTKNFYKEAPEVANLTKSEIERIREENNKITVSYVFEPKEGETSPP--IPNPV 281
Query: 595 TSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPA 654
+F+Q F YP++L ++ + F+ PSPIQ+QAWPIL+ GHDMIGIAQTGTGKT AFLLP
Sbjct: 282 WTFEQCFAEYPDMLEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPG 341
Query: 655 LIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLE 714
+IHT Q+TP R G +VLV+APTRELA QIE EV K ++G+KAVCVYGG Q+
Sbjct: 342 MIHTEYQSTPRGTRGGANVLVLAPTRELALQIEMEVKKYSFRGMKAVCVYGGGNRNMQIS 401
Query: 715 KIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPN 774
+ G I+I TPGRLND + ID+ ++++VLDEADRMLD+GFEPQI K + I P+
Sbjct: 402 DLERGAEIIICTPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPD 461
Query: 775 RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDED-EKKDWLME 833
RQT+MTSATW V+R+A+ YM NP++V VGSLDLAATH+V Q I ++++D +K + +
Sbjct: 462 RQTIMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQIIKLMEDDMDKFNTITS 521
Query: 834 FFDNMDEERDKVMVFMGRKASVSAMSSDLACQ-YRKSCSLYGDLSQEDREIALEDITSGY 892
F NM DK+++F GRK +SS+L + C ++G+ Q DRE A+ DI SG
Sbjct: 522 FVKNMSST-DKIIIFCGRKVRADDLSSELTLDGFMTQC-IHGNRDQMDREQAIADIKSGV 579
Query: 893 ARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
RI VATDVASRGLD+ D+THVINYDFP +IEEYVHRVGRTG
Sbjct: 580 VRILVATDVASRGLDIEDITHVINYDFPHNIEEYVHRVGRTG 621
>ZFIN|ZDB-GENE-080204-77 [details] [associations]
symbol:ddx43 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
43" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
ZFIN:ZDB-GENE-080204-77 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ
EMBL:BX890626 EMBL:CR354610 IPI:IPI00886666 UniGene:Dr.41756
Ensembl:ENSDART00000101479 OMA:IDITSIT Uniprot:B8A609
Length = 719
Score = 1180 (420.4 bits), Expect = 6.7e-120, P = 6.7e-120
Identities = 234/439 (53%), Positives = 309/439 (70%)
Query: 9 DRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDF 68
D+ E KW P + KN Y E VA + E+V+ +RK+NN+I V + DG D+
Sbjct: 217 DKYEAMKWQDLPVLKKNFYIEAKSVAARSAEEVKIWRKENNNIFVDDL-KDG--DKRT-- 271
Query: 69 QIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTF 128
IPNPV +F++AF HYP I+ + + F P+PIQ+QAWP++++G D+IGIAQTGTGKT
Sbjct: 272 -IPNPVCTFEEAFAHYPGIMENIVRVGFKKPTPIQSQAWPVVLNGIDLIGIAQTGTGKTL 330
Query: 129 AFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKE 188
A+LLP IH Q P +R GP +LV+ PTRELA QIE E NK YKG K++C+YGG +
Sbjct: 331 AYLLPGFIHMDGQPMPRDKRNGPGMLVLTPTRELALQIEAECNKYSYKGFKSICIYGGGD 390
Query: 189 IEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTS 248
Q++ + G I+IATPGRLND I+L++++++VLDEADRMLD+GFEPQI K
Sbjct: 391 RNAQIKVVTSGVDIVIATPGRLNDLQMNELINLRSITYLVLDEADRMLDMGFEPQIMKII 450
Query: 249 IYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKK 308
+ I P+RQTVMTSATW V+R+AK Y+ +P+ V VG+LDLAA +TV Q ++ + EDEKK
Sbjct: 451 LDIRPDRQTVMTSATWPPGVRRLAKSYLKDPMMVYVGTLDLAAVNTVQQTVLFVQEDEKK 510
Query: 309 DWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDI 368
D++ +F M E DKV++F+G+K +SSDL Q SL+GD Q DRE AL+D
Sbjct: 511 DYVFDFIHRM-EPLDKVLIFVGKKLKADDLSSDLCLQGIAVQSLHGDREQCDREEALQDF 569
Query: 369 TSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTR 428
G RI VATD+ASRGLDV D+THV NYDFP ++EEYVHRVGRTGRAG+SGES+TL+TR
Sbjct: 570 KDGRVRILVATDLASRGLDVHDITHVFNYDFPRNVEEYVHRVGRTGRAGRSGESVTLVTR 629
Query: 429 KDWSHAHEIIPILEEGGHE 447
+DW A E+I ILE G +
Sbjct: 630 EDWRVAAELITILERSGQD 648
Score = 1078 (384.5 bits), Expect = 4.3e-109, P = 4.3e-109
Identities = 218/421 (51%), Positives = 289/421 (68%)
Query: 517 PEPTMEELMALS---DRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISV 573
P PT + +L D+ E KW P + KN Y E VA + E+V+ +RK+NN+I V
Sbjct: 202 PAPTPIDWTSLRENRDKYEAMKWQDLPVLKKNFYIEAKSVAARSAEEVKIWRKENNNIFV 261
Query: 574 SVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSG 633
+ DG D+ IPNPV +F++AF HYP I+ + + F P+PIQ+QAWP++++G
Sbjct: 262 DDL-KDG--DKRT---IPNPVCTFEEAFAHYPGIMENIVRVGFKKPTPIQSQAWPVVLNG 315
Query: 634 HDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI 693
D+IGIAQTGTGKT A+LLP IH Q P +R GP +LV+ PTRELA QIE E NK
Sbjct: 316 IDLIGIAQTGTGKTLAYLLPGFIHMDGQPMPRDKRNGPGMLVLTPTRELALQIEAECNKY 375
Query: 694 DYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEAD 753
YKG K++C+YGG + Q++ + G I+IATPGRLND I+L++++++VLDEAD
Sbjct: 376 SYKGFKSICIYGGGDRNAQIKVVTSGVDIVIATPGRLNDLQMNELINLRSITYLVLDEAD 435
Query: 754 RMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATH 813
RMLD+GFEPQI K + I P+RQTVMTSATW V+R+AK Y+ +P+ V VG+LDLAA +
Sbjct: 436 RMLDMGFEPQIMKIILDIRPDRQTVMTSATWPPGVRRLAKSYLKDPMMVYVGTLDLAAVN 495
Query: 814 TVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLY 873
TV Q ++ + EDEKKD++ +F M E DKV++F+G+K +SSDL Q SL+
Sbjct: 496 TVQQTVLFVQEDEKKDYVFDFIHRM-EPLDKVLIFVGKKLKADDLSSDLCLQGIAVQSLH 554
Query: 874 GDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRT 933
GD Q DRE AL+D G RI VATD+ASRGLDV D+THV NYDFP ++EEYVHRVGRT
Sbjct: 555 GDREQCDREEALQDFKDGRVRILVATDLASRGLDVHDITHVFNYDFPRNVEEYVHRVGRT 614
Query: 934 G 934
G
Sbjct: 615 G 615
>UNIPROTKB|F1NVJ6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00660000095174 OMA:VLDITHV
EMBL:AADN02002507 EMBL:AADN02002508 IPI:IPI00594090
Ensembl:ENSGALT00000025673 Uniprot:F1NVJ6
Length = 642
Score = 1143 (407.4 bits), Expect = 5.6e-116, P = 5.6e-116
Identities = 224/431 (51%), Positives = 305/431 (70%)
Query: 12 ERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIP 71
E KWA P I KN YKE A M+PE+VE +RK+NN+I + D + E IP
Sbjct: 182 EAMKWADLPPIEKNFYKESSRTACMSPEEVELWRKENNNI----ICDD--LKEGEKRCIP 235
Query: 72 NPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFL 131
NPV F+ F+ YP+I+ + F P+PIQ+QAWPI++ G D+IGIAQTGTGKT A+L
Sbjct: 236 NPVCKFEDVFEQYPDIMANIRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYL 295
Query: 132 LPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEP 191
+P IH Q P +R GP +LV+APTRELA Q+E E K YKG K++C+YGG + +
Sbjct: 296 MPGFIHLASQPIPKDKRGGPGMLVLAPTRELALQVEAECLKYTYKGFKSICIYGGGDRKA 355
Query: 192 QLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYI 251
Q+ + +G I+IATPGRLND I+LK+++++ +EADRMLD+GFEPQI K I +
Sbjct: 356 QINVVTKGVDIVIATPGRLNDLQMNNFINLKSITYLA-NEADRMLDMGFEPQIMKILIDV 414
Query: 252 NPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWL 311
P+RQTVM SATW V+R+AK Y+ NP+ V VG+LDLAA +TV QK+I+++E+EKK ++
Sbjct: 415 RPDRQTVMMSATWPDGVRRLAKSYLRNPMIVYVGTLDLAAVNTVEQKVIVINEEEKKAFM 474
Query: 312 MEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSG 371
F D+M + +DK ++F+G+K++ ++SDL Q SL+GD Q DRE AL+D G
Sbjct: 475 ENFIDSM-KPKDKAIIFVGKKSTADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKKG 533
Query: 372 YARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDW 431
RI VATD+ASRGLDV D+THV N+DFP +IEEYVHRVGRTGRAG++G+++TL+T+KDW
Sbjct: 534 KVRILVATDLASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLITKKDW 593
Query: 432 SHAHEIIPILE 442
A E+I IL+
Sbjct: 594 KAASELIDILQ 604
Score = 1055 (376.4 bits), Expect = 1.2e-106, P = 1.2e-106
Identities = 209/403 (51%), Positives = 281/403 (69%)
Query: 532 ERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIP 591
E KWA P I KN YKE A M+PE+VE +RK+NN+I + D + E IP
Sbjct: 182 EAMKWADLPPIEKNFYKESSRTACMSPEEVELWRKENNNI----ICDD--LKEGEKRCIP 235
Query: 592 NPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFL 651
NPV F+ F+ YP+I+ + F P+PIQ+QAWPI++ G D+IGIAQTGTGKT A+L
Sbjct: 236 NPVCKFEDVFEQYPDIMANIRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYL 295
Query: 652 LPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEP 711
+P IH Q P +R GP +LV+APTRELA Q+E E K YKG K++C+YGG + +
Sbjct: 296 MPGFIHLASQPIPKDKRGGPGMLVLAPTRELALQVEAECLKYTYKGFKSICIYGGGDRKA 355
Query: 712 QLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYI 771
Q+ + +G I+IATPGRLND I+LK+++++ +EADRMLD+GFEPQI K I +
Sbjct: 356 QINVVTKGVDIVIATPGRLNDLQMNNFINLKSITYLA-NEADRMLDMGFEPQIMKILIDV 414
Query: 772 NPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWL 831
P+RQTVM SATW V+R+AK Y+ NP+ V VG+LDLAA +TV QK+I+++E+EKK ++
Sbjct: 415 RPDRQTVMMSATWPDGVRRLAKSYLRNPMIVYVGTLDLAAVNTVEQKVIVINEEEKKAFM 474
Query: 832 MEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSG 891
F D+M + +DK ++F+G+K++ ++SDL Q SL+GD Q DRE AL+D G
Sbjct: 475 ENFIDSM-KPKDKAIIFVGKKSTADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKKG 533
Query: 892 YARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
RI VATD+ASRGLDV D+THV N+DFP +IEEYVHRVGRTG
Sbjct: 534 KVRILVATDLASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTG 576
>UNIPROTKB|E1BII7 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:DAAA02025231 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:DAAA02025227 EMBL:DAAA02025228
EMBL:DAAA02025229 EMBL:DAAA02025230 IPI:IPI00712097
Ensembl:ENSBTAT00000029077 OMA:ANQNIPE Uniprot:E1BII7
Length = 647
Score = 1103 (393.3 bits), Expect = 9.7e-112, P = 9.7e-112
Identities = 217/430 (50%), Positives = 304/430 (70%)
Query: 15 KWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPV 74
KWA P + KN Y E + ++M+ EQV+ +RK+N +I + DG+ + P +PNP
Sbjct: 186 KWAGLPPVKKNFYIESEKTSSMSQEQVDNWRKENYNIICDDL-KDGE--KRP---LPNPT 239
Query: 75 TSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPA 134
+F+ AF YPE++R +E F P+PIQ+QAWPI++ G D+IG+AQTGTGKT ++L+P
Sbjct: 240 CNFEDAFHCYPEVMRNIEKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPG 299
Query: 135 LIHTHLQTTPISERA--GPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQ 192
IH + + P+ +RA GP +LV+ PTRELA Q++ E ++ Y+GLK+VC+YGG + + Q
Sbjct: 300 FIH--IDSQPVLQRARNGPGMLVLTPTRELALQVDAECSEYSYRGLKSVCIYGGGDRDGQ 357
Query: 193 LEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYIN 252
++ + +G I+IATPGRL+D + LK+++++VLDEAD+MLD+GFEPQI K + +
Sbjct: 358 IKDLSKGADIIIATPGRLHDLQMNNFVYLKSITYLVLDEADKMLDMGFEPQIMKILLDVR 417
Query: 253 PNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLM 312
P+RQTVMTSATW V+R+A+ Y+ P+ V VG+LDL A TVTQ II+ EDEK+ +
Sbjct: 418 PDRQTVMTSATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVTQNIIVTTEDEKRSHIQ 477
Query: 313 EFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGY 372
F D+M +DKV++F+ RKA +SSDL + SL+G+ Q DRE AL+ +G
Sbjct: 478 AFIDSMSP-KDKVIIFVSRKAVADHLSSDLGIRRISVESLHGNREQSDRERALKSFKTGK 536
Query: 373 ARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWS 432
RI +ATD+ASRGLDV D+THV NYDFP +IEEYVHRVGRTGRAG++G SITL+TR DW
Sbjct: 537 VRILIATDLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRNDWK 596
Query: 433 HAHEIIPILE 442
A E+I ILE
Sbjct: 597 IAGELINILE 606
Score = 1016 (362.7 bits), Expect = 1.6e-102, P = 1.6e-102
Identities = 199/402 (49%), Positives = 282/402 (70%)
Query: 535 KWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPV 594
KWA P + KN Y E + ++M+ EQV+ +RK+N +I + DG+ + P +PNP
Sbjct: 186 KWAGLPPVKKNFYIESEKTSSMSQEQVDNWRKENYNIICDDL-KDGE--KRP---LPNPT 239
Query: 595 TSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPA 654
+F+ AF YPE++R +E F P+PIQ+QAWPI++ G D+IG+AQTGTGKT ++L+P
Sbjct: 240 CNFEDAFHCYPEVMRNIEKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPG 299
Query: 655 LIHTHLQTTPISERA--GPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQ 712
IH + + P+ +RA GP +LV+ PTRELA Q++ E ++ Y+GLK+VC+YGG + + Q
Sbjct: 300 FIH--IDSQPVLQRARNGPGMLVLTPTRELALQVDAECSEYSYRGLKSVCIYGGGDRDGQ 357
Query: 713 LEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYIN 772
++ + +G I+IATPGRL+D + LK+++++VLDEAD+MLD+GFEPQI K + +
Sbjct: 358 IKDLSKGADIIIATPGRLHDLQMNNFVYLKSITYLVLDEADKMLDMGFEPQIMKILLDVR 417
Query: 773 PNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLM 832
P+RQTVMTSATW V+R+A+ Y+ P+ V VG+LDL A TVTQ II+ EDEK+ +
Sbjct: 418 PDRQTVMTSATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVTQNIIVTTEDEKRSHIQ 477
Query: 833 EFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGY 892
F D+M +DKV++F+ RKA +SSDL + SL+G+ Q DRE AL+ +G
Sbjct: 478 AFIDSMSP-KDKVIIFVSRKAVADHLSSDLGIRRISVESLHGNREQSDRERALKSFKTGK 536
Query: 893 ARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
RI +ATD+ASRGLDV D+THV NYDFP +IEEYVHRVGRTG
Sbjct: 537 VRILIATDLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTG 578
>UNIPROTKB|F1S0I6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:VLDITHV EMBL:CU468562
EMBL:AEMK01095428 EMBL:AEMK01188208 EMBL:FP312832
Ensembl:ENSSSCT00000004740 Uniprot:F1S0I6
Length = 650
Score = 1102 (393.0 bits), Expect = 1.2e-111, P = 1.2e-111
Identities = 224/431 (51%), Positives = 301/431 (69%)
Query: 15 KWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPV 74
KWA P I KN Y E ++M+ EQV+ +RK+N +I + DG+ + P IPNP
Sbjct: 186 KWAGLPLIKKNFYMESEITSSMSQEQVQNWRKENYNIMCDDL-KDGE--KRP---IPNPA 239
Query: 75 TSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPA 134
F+ AFQ YPE++ ++ F P+PIQ+QAWPI++ G D+IG+AQTGTGKT ++L+P
Sbjct: 240 CKFEDAFQCYPEVMINIKKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPG 299
Query: 135 LIHTHLQTTPIS-ERA--GPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEP 191
IH Q S +RA GP +LV+ PTRELA Q+E E +K YKGLK+VCVYGG + +
Sbjct: 300 FIHVDSQPVVFSLQRARNGPGMLVLTPTRELALQVEAECSKYSYKGLKSVCVYGGGDRDG 359
Query: 192 QLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYI 251
Q++ + +G I+IATPGRLND + LK++S++VLDEAD+MLD+GFEPQI K + I
Sbjct: 360 QIKDLLKGVDIIIATPGRLNDLQMNNFVYLKSISYLVLDEADKMLDMGFEPQIMKILLDI 419
Query: 252 NPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWL 311
P+RQTVMTSATW V+R+A+ Y+ P+ V VG+LDL A TV Q II+ EDEK+ +
Sbjct: 420 RPDRQTVMTSATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIVTTEDEKRSHI 479
Query: 312 MEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSG 371
F ++M +DKV++F+ RKA +SSDL ++ SL+G+ Q DRE AL++ +G
Sbjct: 480 QTFIESMSP-KDKVIIFVSRKAVADHLSSDLGIRHISVESLHGNREQGDRERALKNFKTG 538
Query: 372 YARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDW 431
RI +ATD+ASRGLDV D+THV NYDFP +IEEYVHRVGRTGRAG++G SITL+TR DW
Sbjct: 539 KVRILIATDLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRSDW 598
Query: 432 SHAHEIIPILE 442
A E+I ILE
Sbjct: 599 KIAGELIHILE 609
Score = 1018 (363.4 bits), Expect = 9.8e-103, P = 9.8e-103
Identities = 210/423 (49%), Positives = 288/423 (68%)
Query: 515 IDPEPTMEELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVS 574
ID + E ++ S++K WA P I KN Y E ++M+ EQV+ +RK+N +I
Sbjct: 170 IDWDKFRENILEWSEKK----WAGLPLIKKNFYMESEITSSMSQEQVQNWRKENYNIMCD 225
Query: 575 VVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGH 634
+ DG+ + P IPNP F+ AFQ YPE++ ++ F P+PIQ+QAWPI++ G
Sbjct: 226 DL-KDGE--KRP---IPNPACKFEDAFQCYPEVMINIKKAGFQKPTPIQSQAWPIILQGI 279
Query: 635 DMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS-ERA--GPSVLVMAPTRELATQIEREVN 691
D+IG+AQTGTGKT ++L+P IH Q S +RA GP +LV+ PTRELA Q+E E +
Sbjct: 280 DLIGVAQTGTGKTLSYLMPGFIHVDSQPVVFSLQRARNGPGMLVLTPTRELALQVEAECS 339
Query: 692 KIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDE 751
K YKGLK+VCVYGG + + Q++ + +G I+IATPGRLND + LK++S++VLDE
Sbjct: 340 KYSYKGLKSVCVYGGGDRDGQIKDLLKGVDIIIATPGRLNDLQMNNFVYLKSISYLVLDE 399
Query: 752 ADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAA 811
AD+MLD+GFEPQI K + I P+RQTVMTSATW V+R+A+ Y+ P+ V VG+LDL A
Sbjct: 400 ADKMLDMGFEPQIMKILLDIRPDRQTVMTSATWPYAVRRLAQSYLKEPMIVYVGTLDLVA 459
Query: 812 THTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCS 871
TV Q II+ EDEK+ + F ++M +DKV++F+ RKA +SSDL ++ S
Sbjct: 460 VSTVKQNIIVTTEDEKRSHIQTFIESMSP-KDKVIIFVSRKAVADHLSSDLGIRHISVES 518
Query: 872 LYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVG 931
L+G+ Q DRE AL++ +G RI +ATD+ASRGLDV D+THV NYDFP +IEEYVHRVG
Sbjct: 519 LHGNREQGDRERALKNFKTGKVRILIATDLASRGLDVHDVTHVYNYDFPRNIEEYVHRVG 578
Query: 932 RTG 934
RTG
Sbjct: 579 RTG 581
>UNIPROTKB|F1SQ03 [details] [associations]
symbol:LOC100524536 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GLKSICI EMBL:CU927956 RefSeq:XP_003135023.1
ProteinModelPortal:F1SQ03 Ensembl:ENSSSCT00000013311
GeneID:100524536 Uniprot:F1SQ03
Length = 630
Score = 1091 (389.1 bits), Expect = 1.8e-110, P = 1.8e-110
Identities = 215/431 (49%), Positives = 298/431 (69%)
Query: 12 ERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIP 71
E+ KWA P I KN Y E ++M+ QV+ +RK+N ++ + + DG+ + P IP
Sbjct: 166 EKRKWADLPPIHKNFYVETKATSSMSQVQVDIWRKENFNVMCNDL-KDGE--KRP---IP 219
Query: 72 NPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFL 131
NP+ F+ AF YPE+++ ++ F P+PIQ+QAWPI++ G D+IGIAQTGTGKT ++L
Sbjct: 220 NPICKFEDAFGPYPELMKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYL 279
Query: 132 LPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEP 191
+P IH + Q +R GP +LV+ PTRELA Q+ E +K YKGLK+VC+YGG +
Sbjct: 280 MPGFIHLNSQPVSRGKRNGPGMLVLTPTRELALQVGAECSKYSYKGLKSVCIYGGGNRKG 339
Query: 192 QLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYI 251
Q++ I +G I+IATPGRLND ++L++++++VLDEAD+MLDLGFE QI K + +
Sbjct: 340 QIQDIMKGVDIIIATPGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDV 399
Query: 252 NPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWL 311
P+RQT+MTSATW ++++A Y+ P+ V VG+LDL A TV Q III E+EK+
Sbjct: 400 RPDRQTIMTSATWPDTIRQLAHSYLKEPMLVYVGTLDLVAVDTVKQNIIITTEEEKRSLF 459
Query: 312 MEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSG 371
EF ++ +DKV+VF+ RK +SSDL+ Q SL+GD Q DRE AL+D +G
Sbjct: 460 QEFLQSLSP-KDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTG 518
Query: 372 YARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDW 431
+I +ATD+ASRGLDV D+THV NY+FP +IEEYVHRVGRTGRAGK GES+TLMT+ DW
Sbjct: 519 KVKILIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDDW 578
Query: 432 SHAHEIIPILE 442
A E+I IL+
Sbjct: 579 KVAGELIEILQ 589
Score = 1001 (357.4 bits), Expect = 6.2e-101, P = 6.2e-101
Identities = 200/422 (47%), Positives = 282/422 (66%)
Query: 513 RHIDPEPTMEELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDIS 572
R P +++ A E+ KWA P I KN Y E ++M+ QV+ +RK+N ++
Sbjct: 147 REAQPLIDWDQIKAEVVEWEKRKWADLPPIHKNFYVETKATSSMSQVQVDIWRKENFNVM 206
Query: 573 VSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMS 632
+ + DG+ + P IPNP+ F+ AF YPE+++ ++ F P+PIQ+QAWPI++
Sbjct: 207 CNDL-KDGE--KRP---IPNPICKFEDAFGPYPELMKSIKKAGFQKPTPIQSQAWPIVLQ 260
Query: 633 GHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK 692
G D+IGIAQTGTGKT ++L+P IH + Q +R GP +LV+ PTRELA Q+ E +K
Sbjct: 261 GIDLIGIAQTGTGKTLSYLMPGFIHLNSQPVSRGKRNGPGMLVLTPTRELALQVGAECSK 320
Query: 693 IDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEA 752
YKGLK+VC+YGG + Q++ I +G I+IATPGRLND ++L++++++VLDEA
Sbjct: 321 YSYKGLKSVCIYGGGNRKGQIQDIMKGVDIIIATPGRLNDLQMNNFVNLRSITYLVLDEA 380
Query: 753 DRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAAT 812
D+MLDLGFE QI K + + P+RQT+MTSATW ++++A Y+ P+ V VG+LDL A
Sbjct: 381 DKMLDLGFEHQIMKILLDVRPDRQTIMTSATWPDTIRQLAHSYLKEPMLVYVGTLDLVAV 440
Query: 813 HTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSL 872
TV Q III E+EK+ EF ++ +DKV+VF+ RK +SSDL+ Q SL
Sbjct: 441 DTVKQNIIITTEEEKRSLFQEFLQSLSP-KDKVIVFVSRKLIADDLSSDLSIQGIPVQSL 499
Query: 873 YGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGR 932
+GD Q DRE AL+D +G +I +ATD+ASRGLDV D+THV NY+FP +IEEYVHRVGR
Sbjct: 500 HGDREQSDRERALDDFKTGKVKILIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGR 559
Query: 933 TG 934
TG
Sbjct: 560 TG 561
>UNIPROTKB|G3MYF0 [details] [associations]
symbol:LOC100300937 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:GLKSICI EMBL:DAAA02074437
Ensembl:ENSBTAT00000065115 Uniprot:G3MYF0
Length = 608
Score = 1085 (387.0 bits), Expect = 7.8e-110, P = 7.8e-110
Identities = 215/432 (49%), Positives = 300/432 (69%)
Query: 11 KERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQI 70
K+R KWA P I KN+Y E +++ QVE +RK+N +I +T +G+ + P I
Sbjct: 143 KKR-KWADLPPIKKNLYIESKATHSLSEAQVEIWRKENFNIRCDDLT-EGE--KRP---I 195
Query: 71 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 130
P P +F+ AFQ YPEI++ + F P+PIQ+Q+WPI++ G D+IGIAQTGTGKT ++
Sbjct: 196 PKPTCTFEDAFQQYPEIMQSIRRAGFQKPTPIQSQSWPIILQGIDLIGIAQTGTGKTLSY 255
Query: 131 LLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIE 190
L+P IH H Q +R GP +LV+ PTRELA Q+E E +K YKGLK+VC+YGG +
Sbjct: 256 LMPGFIHIHSQPVSRKQRNGPGMLVLTPTRELALQVEAECSKYLYKGLKSVCIYGGGNRK 315
Query: 191 PQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIY 250
Q++ + +G I+IATPGRLND ++L++++++VLDEAD+MLDLGFE QI K +
Sbjct: 316 GQIQDVTKGVDIIIATPGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLD 375
Query: 251 INPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDW 310
+ P+RQTVMT+A+W +R+A+ Y+ P+ V VG+LDL +TV Q II+ E+EK+
Sbjct: 376 VRPDRQTVMTTASWPDSTRRLAQSYLKQPMIVYVGTLDLVTVNTVKQNIIVTTEEEKRSL 435
Query: 311 LMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITS 370
+ EF ++ +DKV+VF+ RK +SSDL+ Q SL+GD Q DR+ ALED +
Sbjct: 436 VKEFLQSLSP-KDKVIVFVSRKLVADDLSSDLSIQGIPVQSLHGDREQSDRDQALEDFRT 494
Query: 371 GYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430
G +I +ATD+A+RGLDV D+THV NY+FP +IEEYVHRVGRTGRAGK GESITL+T+ D
Sbjct: 495 GRVKILIATDLAARGLDVSDVTHVYNYNFPRNIEEYVHRVGRTGRAGKIGESITLVTQDD 554
Query: 431 WSHAHEIIPILE 442
W A E+I IL+
Sbjct: 555 WKIADELIKILQ 566
Score = 997 (356.0 bits), Expect = 1.7e-100, P = 1.7e-100
Identities = 197/404 (48%), Positives = 278/404 (68%)
Query: 531 KERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQI 590
K+R KWA P I KN+Y E +++ QVE +RK+N +I +T +G+ + P I
Sbjct: 143 KKR-KWADLPPIKKNLYIESKATHSLSEAQVEIWRKENFNIRCDDLT-EGE--KRP---I 195
Query: 591 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 650
P P +F+ AFQ YPEI++ + F P+PIQ+Q+WPI++ G D+IGIAQTGTGKT ++
Sbjct: 196 PKPTCTFEDAFQQYPEIMQSIRRAGFQKPTPIQSQSWPIILQGIDLIGIAQTGTGKTLSY 255
Query: 651 LLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELE 710
L+P IH H Q +R GP +LV+ PTRELA Q+E E +K YKGLK+VC+YGG +
Sbjct: 256 LMPGFIHIHSQPVSRKQRNGPGMLVLTPTRELALQVEAECSKYLYKGLKSVCIYGGGNRK 315
Query: 711 PQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIY 770
Q++ + +G I+IATPGRLND ++L++++++VLDEAD+MLDLGFE QI K +
Sbjct: 316 GQIQDVTKGVDIIIATPGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLD 375
Query: 771 INPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDW 830
+ P+RQTVMT+A+W +R+A+ Y+ P+ V VG+LDL +TV Q II+ E+EK+
Sbjct: 376 VRPDRQTVMTTASWPDSTRRLAQSYLKQPMIVYVGTLDLVTVNTVKQNIIVTTEEEKRSL 435
Query: 831 LMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITS 890
+ EF ++ +DKV+VF+ RK +SSDL+ Q SL+GD Q DR+ ALED +
Sbjct: 436 VKEFLQSLSP-KDKVIVFVSRKLVADDLSSDLSIQGIPVQSLHGDREQSDRDQALEDFRT 494
Query: 891 GYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
G +I +ATD+A+RGLDV D+THV NY+FP +IEEYVHRVGRTG
Sbjct: 495 GRVKILIATDLAARGLDVSDVTHVYNYNFPRNIEEYVHRVGRTG 538
>UNIPROTKB|I3LHW0 [details] [associations]
symbol:I3LHW0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 Ensembl:ENSSSCT00000032137 OMA:FESQIMK
Uniprot:I3LHW0
Length = 621
Score = 1079 (384.9 bits), Expect = 3.4e-109, P = 3.4e-109
Identities = 214/431 (49%), Positives = 297/431 (68%)
Query: 12 ERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIP 71
E+ KW P I KN Y E ++M+ QV+ +RK+N ++ + + DG+ + P IP
Sbjct: 158 EKRKWDLPP-IHKNFYVETKATSSMSQVQVDIWRKENFNVMCNDL-KDGE--KRP---IP 210
Query: 72 NPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFL 131
NP+ F+ AF YPE+++ ++ F P+PIQ+QAWPI++ G D+IGIAQTGTGKT ++L
Sbjct: 211 NPICKFEDAFGPYPELMKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYL 270
Query: 132 LPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEP 191
+P IH + Q +R GP +LV+ PTRELA Q+ E +K YKGLK+VC+YGG +
Sbjct: 271 MPGFIHLNSQPVSRGKRNGPGMLVLTPTRELALQVGAECSKYSYKGLKSVCIYGGGNRKG 330
Query: 192 QLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYI 251
Q++ I +G I+IATPGRLND ++L++++++VLDEAD+MLDLGFE QI K + +
Sbjct: 331 QIQDIMKGVDIIIATPGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDV 390
Query: 252 NPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWL 311
P+RQT+MTSATW ++++A Y+ P+ V VG+LDL A TV Q III E+EK+
Sbjct: 391 RPDRQTIMTSATWPDTIRQLAHSYLKEPMLVYVGTLDLVAVDTVKQNIIITTEEEKRSLF 450
Query: 312 MEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSG 371
EF ++ +DKV+VF+ RK +SSDL+ Q SL+GD Q DRE AL+D +G
Sbjct: 451 QEFLQSLSP-KDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTG 509
Query: 372 YARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDW 431
+I +ATD+ASRGLDV D+THV NY+FP +IEEYVHRVGRTGRAGK GES+TLMT+ DW
Sbjct: 510 KVKILIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDDW 569
Query: 432 SHAHEIIPILE 442
A E+I IL+
Sbjct: 570 KVAGELIEILQ 580
Score = 989 (353.2 bits), Expect = 1.2e-99, P = 1.2e-99
Identities = 199/422 (47%), Positives = 281/422 (66%)
Query: 513 RHIDPEPTMEELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDIS 572
R P +++ A E+ KW P I KN Y E ++M+ QV+ +RK+N ++
Sbjct: 139 REAQPLIDWDQIKAEVVEWEKRKWDLPP-IHKNFYVETKATSSMSQVQVDIWRKENFNVM 197
Query: 573 VSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMS 632
+ + DG+ + P IPNP+ F+ AF YPE+++ ++ F P+PIQ+QAWPI++
Sbjct: 198 CNDL-KDGE--KRP---IPNPICKFEDAFGPYPELMKSIKKAGFQKPTPIQSQAWPIVLQ 251
Query: 633 GHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK 692
G D+IGIAQTGTGKT ++L+P IH + Q +R GP +LV+ PTRELA Q+ E +K
Sbjct: 252 GIDLIGIAQTGTGKTLSYLMPGFIHLNSQPVSRGKRNGPGMLVLTPTRELALQVGAECSK 311
Query: 693 IDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEA 752
YKGLK+VC+YGG + Q++ I +G I+IATPGRLND ++L++++++VLDEA
Sbjct: 312 YSYKGLKSVCIYGGGNRKGQIQDIMKGVDIIIATPGRLNDLQMNNFVNLRSITYLVLDEA 371
Query: 753 DRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAAT 812
D+MLDLGFE QI K + + P+RQT+MTSATW ++++A Y+ P+ V VG+LDL A
Sbjct: 372 DKMLDLGFEHQIMKILLDVRPDRQTIMTSATWPDTIRQLAHSYLKEPMLVYVGTLDLVAV 431
Query: 813 HTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSL 872
TV Q III E+EK+ EF ++ +DKV+VF+ RK +SSDL+ Q SL
Sbjct: 432 DTVKQNIIITTEEEKRSLFQEFLQSLSP-KDKVIVFVSRKLIADDLSSDLSIQGIPVQSL 490
Query: 873 YGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGR 932
+GD Q DRE AL+D +G +I +ATD+ASRGLDV D+THV NY+FP +IEEYVHRVGR
Sbjct: 491 HGDREQSDRERALDDFKTGKVKILIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGR 550
Query: 933 TG 934
TG
Sbjct: 551 TG 552
>UNIPROTKB|Q9NXZ2 [details] [associations]
symbol:DDX43 "Probable ATP-dependent RNA helicase DDX43"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 EMBL:AJ278110 EMBL:AL136751 EMBL:BC066938
IPI:IPI00032899 RefSeq:NP_061135.2 UniGene:Hs.125507
ProteinModelPortal:Q9NXZ2 SMR:Q9NXZ2 STRING:Q9NXZ2
PhosphoSite:Q9NXZ2 DMDM:145559466 PRIDE:Q9NXZ2 DNASU:55510
Ensembl:ENST00000370336 GeneID:55510 KEGG:hsa:55510 UCSC:uc003pgw.3
CTD:55510 GeneCards:GC06P074161 HGNC:HGNC:18677 HPA:HPA031380
HPA:HPA031381 MIM:606286 neXtProt:NX_Q9NXZ2 PharmGKB:PA134988734
InParanoid:Q9NXZ2 OMA:VLDITHV OrthoDB:EOG43BMNQ PhylomeDB:Q9NXZ2
ChiTaRS:DDX43 GenomeRNAi:55510 NextBio:59918 ArrayExpress:Q9NXZ2
Bgee:Q9NXZ2 CleanEx:HS_DDX43 Genevestigator:Q9NXZ2
GermOnline:ENSG00000080007 Uniprot:Q9NXZ2
Length = 648
Score = 1078 (384.5 bits), Expect = 4.3e-109, P = 4.3e-109
Identities = 216/431 (50%), Positives = 294/431 (68%)
Query: 12 ERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIP 71
++ KWA P I KN YKE + M+ + +++RK+N +I+ + DG+ + P IP
Sbjct: 184 QKTKWADLPPIKKNFYKESTATSAMSKVEADSWRKENFNITWDDL-KDGE--KRP---IP 237
Query: 72 NPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFL 131
NP +F AFQ YPE++ ++ F P+PIQ+QAWPI++ G D+IG+AQTGTGKT +L
Sbjct: 238 NPTCTFDDAFQCYPEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYL 297
Query: 132 LPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEP 191
+P IH LQ + +R P +LV+ PTRELA Q+E E K YKGL++VCVYGG +
Sbjct: 298 MPGFIHLVLQPSLKGQRNRPGMLVLTPTRELALQVEGECCKYSYKGLRSVCVYGGGNRDE 357
Query: 192 QLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYI 251
Q+E++++G I+IATPGRLND ++LK ++++VLDEAD+MLD+GFEPQI K + +
Sbjct: 358 QIEELKKGVDIIIATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDV 417
Query: 252 NPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWL 311
P+RQTVMTSATW V R+A+ Y+ P+ V VG+LDL A +V Q II+ E+EK +
Sbjct: 418 RPDRQTVMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHM 477
Query: 312 MEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSG 371
F +M DKV+VF+ RKA +SSDL SL+GD Q DRE ALE+ +G
Sbjct: 478 QTFLQSMSST-DKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTG 536
Query: 372 YARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDW 431
RI +ATD+ASRGLDV D+THV N+DFP +IEEYVHR+GRTGRAG++G SIT +TR DW
Sbjct: 537 KVRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDW 596
Query: 432 SHAHEIIPILE 442
A E+I ILE
Sbjct: 597 RVASELINILE 607
Score = 995 (355.3 bits), Expect = 2.7e-100, P = 2.7e-100
Identities = 199/403 (49%), Positives = 273/403 (67%)
Query: 532 ERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIP 591
++ KWA P I KN YKE + M+ + +++RK+N +I+ + DG+ + P IP
Sbjct: 184 QKTKWADLPPIKKNFYKESTATSAMSKVEADSWRKENFNITWDDL-KDGE--KRP---IP 237
Query: 592 NPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFL 651
NP +F AFQ YPE++ ++ F P+PIQ+QAWPI++ G D+IG+AQTGTGKT +L
Sbjct: 238 NPTCTFDDAFQCYPEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYL 297
Query: 652 LPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEP 711
+P IH LQ + +R P +LV+ PTRELA Q+E E K YKGL++VCVYGG +
Sbjct: 298 MPGFIHLVLQPSLKGQRNRPGMLVLTPTRELALQVEGECCKYSYKGLRSVCVYGGGNRDE 357
Query: 712 QLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYI 771
Q+E++++G I+IATPGRLND ++LK ++++VLDEAD+MLD+GFEPQI K + +
Sbjct: 358 QIEELKKGVDIIIATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDV 417
Query: 772 NPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWL 831
P+RQTVMTSATW V R+A+ Y+ P+ V VG+LDL A +V Q II+ E+EK +
Sbjct: 418 RPDRQTVMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHM 477
Query: 832 MEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSG 891
F +M DKV+VF+ RKA +SSDL SL+GD Q DRE ALE+ +G
Sbjct: 478 QTFLQSMSST-DKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTG 536
Query: 892 YARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
RI +ATD+ASRGLDV D+THV N+DFP +IEEYVHR+GRTG
Sbjct: 537 KVRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTG 579
>UNIPROTKB|F1NQ09 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AADN02002507 EMBL:AADN02002508
IPI:IPI00819782 ProteinModelPortal:F1NQ09
Ensembl:ENSGALT00000037063 Uniprot:F1NQ09
Length = 451
Score = 1043 (372.2 bits), Expect = 2.2e-105, P = 2.2e-105
Identities = 214/423 (50%), Positives = 283/423 (66%)
Query: 20 PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQ 79
P I KN YKE A M+PE+VE +RK+NN+I + D + E IPNPV F+
Sbjct: 3 PPIEKNFYKESSRTACMSPEEVELWRKENNNI----ICDD--LKEGEKRCIPNPVCKFED 56
Query: 80 AFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH 139
F+ YP+I+ + F P+PIQ+QAWPI++ G D+IGIAQTGTGKT A+L+P IH
Sbjct: 57 VFEQYPDIMANIRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLA 116
Query: 140 LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREG 199
Q P +R GP +LV+APTRELA Q+E E K YKG K++C+YGG + + Q+ + +G
Sbjct: 117 SQPIPKDKRGGPGMLVLAPTRELALQVEAECLKYTYKGFKSICIYGGGDRKAQINVVTKG 176
Query: 200 CHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVM 259
I+IATPGRLND I+LK+++++VLDEADRMLD+GFEPQI K I + P+RQTVM
Sbjct: 177 VDIVIATPGRLNDLQMNNFINLKSITYLVLDEADRMLDMGFEPQIMKILIDVRPDRQTVM 236
Query: 260 TSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMD 319
SATW V+R+AK Y+ NP+ V VG+LDLA + V K + D+D W +
Sbjct: 237 MSATWPDGVRRLAKSYLRNPMIVYVGTLDLAVSGVVL-KYLQFDKDIFT-WKYMQVNAQS 294
Query: 320 EERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVAT 379
D V+VF+ ++SDL Q SL+GD Q DRE AL+D G RI VAT
Sbjct: 295 FCTDVVVVFVQLHVVADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKKGKVRILVAT 354
Query: 380 DVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIP 439
D+ASRGLDV D+THV N+DFP +IEEYVHRVGRTGRAG++G+++TL+T+KDW A E+I
Sbjct: 355 DLASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLITKKDWKAASELID 414
Query: 440 ILE 442
IL+
Sbjct: 415 ILQ 417
Score = 955 (341.2 bits), Expect = 4.7e-96, P = 4.7e-96
Identities = 199/395 (50%), Positives = 259/395 (65%)
Query: 540 PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQ 599
P I KN YKE A M+PE+VE +RK+NN+I + D + E IPNPV F+
Sbjct: 3 PPIEKNFYKESSRTACMSPEEVELWRKENNNI----ICDD--LKEGEKRCIPNPVCKFED 56
Query: 600 AFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH 659
F+ YP+I+ + F P+PIQ+QAWPI++ G D+IGIAQTGTGKT A+L+P IH
Sbjct: 57 VFEQYPDIMANIRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLA 116
Query: 660 LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREG 719
Q P +R GP +LV+APTRELA Q+E E K YKG K++C+YGG + + Q+ + +G
Sbjct: 117 SQPIPKDKRGGPGMLVLAPTRELALQVEAECLKYTYKGFKSICIYGGGDRKAQINVVTKG 176
Query: 720 CHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVM 779
I+IATPGRLND I+LK+++++VLDEADRMLD+GFEPQI K I + P+RQTVM
Sbjct: 177 VDIVIATPGRLNDLQMNNFINLKSITYLVLDEADRMLDMGFEPQIMKILIDVRPDRQTVM 236
Query: 780 TSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMD 839
SATW V+R+AK Y+ NP+ V VG+LDLA + V K + D+D W +
Sbjct: 237 MSATWPDGVRRLAKSYLRNPMIVYVGTLDLAVSGVVL-KYLQFDKDIFT-WKYMQVNAQS 294
Query: 840 EERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVAT 899
D V+VF+ ++SDL Q SL+GD Q DRE AL+D G RI VAT
Sbjct: 295 FCTDVVVVFVQLHVVADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKKGKVRILVAT 354
Query: 900 DVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
D+ASRGLDV D+THV N+DFP +IEEYVHRVGRTG
Sbjct: 355 DLASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTG 389
>UNIPROTKB|Q86TM3 [details] [associations]
symbol:DDX53 "Probable ATP-dependent RNA helicase DDX53"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ EMBL:AY039237 EMBL:BC051703
EMBL:BC067878 IPI:IPI00328813 PIR:JC7831 RefSeq:NP_874358.2
UniGene:Hs.434416 PDB:3IUY PDBsum:3IUY ProteinModelPortal:Q86TM3
SMR:Q86TM3 STRING:Q86TM3 PhosphoSite:Q86TM3 DMDM:143811384
PaxDb:Q86TM3 PRIDE:Q86TM3 Ensembl:ENST00000327968 GeneID:168400
KEGG:hsa:168400 UCSC:uc004daj.3 CTD:168400 GeneCards:GC0XP023018
HGNC:HGNC:20083 HPA:HPA003186 neXtProt:NX_Q86TM3
PharmGKB:PA134863598 InParanoid:Q86TM3 OMA:GLKSICI
EvolutionaryTrace:Q86TM3 GenomeRNAi:168400 NextBio:88718
Bgee:Q86TM3 CleanEx:HS_DDX53 Genevestigator:Q86TM3
GermOnline:ENSG00000184735 Uniprot:Q86TM3
Length = 631
Score = 999 (356.7 bits), Expect = 1.0e-100, P = 1.0e-100
Identities = 202/433 (46%), Positives = 287/433 (66%)
Query: 12 ERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIP 71
E+ KWA P + KN Y E + M+ QV +RK+N +I T D + IP
Sbjct: 164 EKRKWADLPPVKKNFYIESKATSCMSEMQVINWRKENFNI-----TCD-DLKSGEKRLIP 217
Query: 72 NPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFL 131
P FK AFQ YP++L+ + + P+PIQ+QAWPI++ G D+I +AQTGTGKT ++L
Sbjct: 218 KPTCRFKDAFQQYPDLLKSIIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYL 277
Query: 132 LPALIHTHLQTTPIS--ERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEI 189
+P IH L + PIS +R GP +LV+ PTRELA +E E +K YKGLK++C+YGG+
Sbjct: 278 MPGFIH--LDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNR 335
Query: 190 EPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSI 249
Q+E I +G I+IATPGRLND S++L++++++V+DEAD+MLD+ FEPQI K +
Sbjct: 336 NGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILL 395
Query: 250 YINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKD 309
+ P+RQTVMTSATW V+++A Y+ +P+ V VG+L+L A +TV Q II+ E EK+
Sbjct: 396 DVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYVGNLNLVAVNTVKQNIIVTTEKEKRA 455
Query: 310 WLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDIT 369
EF +NM DKV++F+ +K +SSD Q + SL+G+ Q D+E A+ED
Sbjct: 456 LTQEFVENMSPN-DKVIMFVSQKHIADDLSSDFNIQGISAESLHGNSEQSDQERAVEDFK 514
Query: 370 SGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRK 429
SG +I + TD+ SRGLD+ D+THV NYDFP +I+ YVHRVG GR GK+G S+TL+T++
Sbjct: 515 SGNIKILITTDIVSRGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQR 574
Query: 430 DWSHAHEIIPILE 442
D A E+I IL+
Sbjct: 575 DSKMAGELIKILD 587
Score = 936 (334.5 bits), Expect = 4.8e-94, P = 4.8e-94
Identities = 193/435 (44%), Positives = 278/435 (63%)
Query: 506 INKIDLGRHIDPEPTMEELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFR 565
+ + D+ +P + + A E+ KWA P + KN Y E + M+ QV +R
Sbjct: 138 LGRNDIVGEAEPLSNWDRIRAAVVECEKRKWADLPPVKKNFYIESKATSCMSEMQVINWR 197
Query: 566 KKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQ 625
K+N +I T D + IP P FK AFQ YP++L+ + + P+PIQ+Q
Sbjct: 198 KENFNI-----TCD-DLKSGEKRLIPKPTCRFKDAFQQYPDLLKSIIRVGIVKPTPIQSQ 251
Query: 626 AWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS--ERAGPSVLVMAPTRELA 683
AWPI++ G D+I +AQTGTGKT ++L+P IH L + PIS +R GP +LV+ PTRELA
Sbjct: 252 AWPIILQGIDLIVVAQTGTGKTLSYLMPGFIH--LDSQPISREQRNGPGMLVLTPTRELA 309
Query: 684 TQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKA 743
+E E +K YKGLK++C+YGG+ Q+E I +G I+IATPGRLND S++L++
Sbjct: 310 LHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRS 369
Query: 744 VSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVN 803
++++V+DEAD+MLD+ FEPQI K + + P+RQTVMTSATW V+++A Y+ +P+ V
Sbjct: 370 ITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 429
Query: 804 VGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLA 863
VG+L+L A +TV Q II+ E EK+ EF +NM DKV++F+ +K +SSD
Sbjct: 430 VGNLNLVAVNTVKQNIIVTTEKEKRALTQEFVENMSPN-DKVIMFVSQKHIADDLSSDFN 488
Query: 864 CQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHI 923
Q + SL+G+ Q D+E A+ED SG +I + TD+ SRGLD+ D+THV NYDFP +I
Sbjct: 489 IQGISAESLHGNSEQSDQERAVEDFKSGNIKILITTDIVSRGLDLNDVTHVYNYDFPRNI 548
Query: 924 EEYVHRVG---RTGE 935
+ YVHRVG RTG+
Sbjct: 549 DVYVHRVGYIGRTGK 563
>CGD|CAL0003204 [details] [associations]
symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
Uniprot:Q59LU0
Length = 562
Score = 903 (322.9 bits), Expect = 1.5e-90, P = 1.5e-90
Identities = 186/434 (42%), Positives = 275/434 (63%)
Query: 15 KWARE--PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPN 72
+W E PK KN Y E P+VA + +E FRK+N +T G IP+
Sbjct: 78 QWDLEQLPKFEKNFYSEHPDVAARSDRDIEQFRKENE------MTVKGH-------DIPH 124
Query: 73 PVTSFKQA-FQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFL 131
P+T+F +A F Y +L+++++ F P+PIQ Q WP+ +SG DMIGIA TG+GKT ++
Sbjct: 125 PITTFDEAGFPDY--VLQEVKDQGFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYC 182
Query: 132 LPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGGKEIE 190
LP+++H + Q + GP VLV+APTRELA QI+ E +K ++ CVYGG
Sbjct: 183 LPSIVHINAQPQ-LQYGDGPIVLVLAPTRELAVQIQTECSKFGKSSRIRNTCVYGGAPKG 241
Query: 191 PQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIY 250
PQ+ + G I IATPGRL D + +LK V+++VLDEADRMLD+GFEPQI K
Sbjct: 242 PQIRDLARGVEICIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQ 301
Query: 251 INPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDW 310
I P+RQT+M SATW K+VQ++ + Y+ +P++V +GSL+LAA+HT+TQ + ++DE K+D
Sbjct: 302 IRPDRQTLMWSATWPKEVQQLTRDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSKRDR 361
Query: 311 LMEFFDNMDEERD-KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDIT 369
L++ ++ E+D K++VF K + +++ L + +++GD Q +R+ L++
Sbjct: 362 LVKHLESALNEKDNKILVFASTKRTCDEITTYLRSDGWPALAIHGDKEQNERDWVLDEFR 421
Query: 370 SGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRK 429
G I VATDVA+RG+DV +THVINYD P +IE+YVHR+GRTGR G SG +I+ T
Sbjct: 422 KGKTSIMVATDVAARGIDVKGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTEG 481
Query: 430 DWSHAHEIIPILEE 443
+ ++ I+ E
Sbjct: 482 NSKLGGDLCKIMRE 495
Score = 870 (311.3 bits), Expect = 4.7e-87, P = 4.7e-87
Identities = 178/405 (43%), Positives = 261/405 (64%)
Query: 535 KWARE--PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPN 592
+W E PK KN Y E P+VA + +E FRK+N +T G IP+
Sbjct: 78 QWDLEQLPKFEKNFYSEHPDVAARSDRDIEQFRKENE------MTVKGH-------DIPH 124
Query: 593 PVTSFKQA-FQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFL 651
P+T+F +A F Y +L+++++ F P+PIQ Q WP+ +SG DMIGIA TG+GKT ++
Sbjct: 125 PITTFDEAGFPDY--VLQEVKDQGFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYC 182
Query: 652 LPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGGKELE 710
LP+++H + Q + GP VLV+APTRELA QI+ E +K ++ CVYGG
Sbjct: 183 LPSIVHINAQPQ-LQYGDGPIVLVLAPTRELAVQIQTECSKFGKSSRIRNTCVYGGAPKG 241
Query: 711 PQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIY 770
PQ+ + G I IATPGRL D + +LK V+++VLDEADRMLD+GFEPQI K
Sbjct: 242 PQIRDLARGVEICIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQ 301
Query: 771 INPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDW 830
I P+RQT+M SATW K+VQ++ + Y+ +P++V +GSL+LAA+HT+TQ + ++DE K+D
Sbjct: 302 IRPDRQTLMWSATWPKEVQQLTRDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSKRDR 361
Query: 831 LMEFFDNMDEERD-KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDIT 889
L++ ++ E+D K++VF K + +++ L + +++GD Q +R+ L++
Sbjct: 362 LVKHLESALNEKDNKILVFASTKRTCDEITTYLRSDGWPALAIHGDKEQNERDWVLDEFR 421
Query: 890 SGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
G I VATDVA+RG+DV +THVINYD P +IE+YVHR+GRTG
Sbjct: 422 KGKTSIMVATDVAARGIDVKGITHVINYDMPGNIEDYVHRIGRTG 466
>ASPGD|ASPL0000006660 [details] [associations]
symbol:AN5931 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
Length = 563
Score = 887 (317.3 bits), Expect = 7.5e-89, P = 7.5e-89
Identities = 184/441 (41%), Positives = 280/441 (63%)
Query: 8 SDRKERDKWARE--PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDEN 65
S K++D W + PK K+ YKE P+V + +V+ FRKK +T G+
Sbjct: 85 SGLKKQD-WDLDTLPKFEKSFYKEHPDVTARSQREVDEFRKKCE------MTVQGR---- 133
Query: 66 PDFQIPNPVTSFKQA-FQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGT 124
+P PV +F +A F Y +L +++ F P+ IQ+Q WP+ +SG D++GIA+TG+
Sbjct: 134 ---DVPRPVETFDEAGFPQY--VLSEVKAQGFEKPTAIQSQGWPMALSGRDVVGIAETGS 188
Query: 125 GKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCV 183
GKT ++ LPA++H + Q ++ GP VL++APTRELA QI+ E++K ++ CV
Sbjct: 189 GKTLSYCLPAIVHINAQPL-LAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCV 247
Query: 184 YGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQ 243
YGG PQ+ + G + IATPGRL D + +L+ V+++VLDEADRMLD+GFEPQ
Sbjct: 248 YGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQ 307
Query: 244 INKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD 303
I K I P+RQT M SATW K+V+++A ++ N ++VN+GS+DL+A H +TQ + ++
Sbjct: 308 IRKIISQIRPDRQTCMWSATWPKEVRQLASDFLNNYIQVNIGSMDLSANHRITQIVEVIS 367
Query: 304 EDEKKDWLMEFFDNMDEER-DKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDRE 362
E EK+D +++ + + E R +K +VF G K ++ L + S++GD Q++R+
Sbjct: 368 EFEKRDRMIKHLEKIMENRGNKCLVFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERD 427
Query: 363 IALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGES 422
L + +G + I VATDVASRG+DV D+THVINYD+P++ E+YVHR+GRTGRAG G +
Sbjct: 428 WVLNEFKTGKSPIMVATDVASRGIDVRDITHVINYDYPNNSEDYVHRIGRTGRAGAKGTA 487
Query: 423 ITLMTRKDWSHAHEIIPILEE 443
IT T + A +++ IL E
Sbjct: 488 ITFFTTDNAKQARDLVTILSE 508
Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
Identities = 173/412 (41%), Positives = 264/412 (64%)
Query: 528 SDRKERDKWARE--PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDEN 585
S K++D W + PK K+ YKE P+V + +V+ FRKK +T G+
Sbjct: 85 SGLKKQD-WDLDTLPKFEKSFYKEHPDVTARSQREVDEFRKKCE------MTVQGR---- 133
Query: 586 PDFQIPNPVTSFKQA-FQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGT 644
+P PV +F +A F Y +L +++ F P+ IQ+Q WP+ +SG D++GIA+TG+
Sbjct: 134 ---DVPRPVETFDEAGFPQY--VLSEVKAQGFEKPTAIQSQGWPMALSGRDVVGIAETGS 188
Query: 645 GKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCV 703
GKT ++ LPA++H + Q ++ GP VL++APTRELA QI+ E++K ++ CV
Sbjct: 189 GKTLSYCLPAIVHINAQPL-LAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCV 247
Query: 704 YGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQ 763
YGG PQ+ + G + IATPGRL D + +L+ V+++VLDEADRMLD+GFEPQ
Sbjct: 248 YGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQ 307
Query: 764 INKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD 823
I K I P+RQT M SATW K+V+++A ++ N ++VN+GS+DL+A H +TQ + ++
Sbjct: 308 IRKIISQIRPDRQTCMWSATWPKEVRQLASDFLNNYIQVNIGSMDLSANHRITQIVEVIS 367
Query: 824 EDEKKDWLMEFFDNMDEER-DKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDRE 882
E EK+D +++ + + E R +K +VF G K ++ L + S++GD Q++R+
Sbjct: 368 EFEKRDRMIKHLEKIMENRGNKCLVFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERD 427
Query: 883 IALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
L + +G + I VATDVASRG+DV D+THVINYD+P++ E+YVHR+GRTG
Sbjct: 428 WVLNEFKTGKSPIMVATDVASRGIDVRDITHVINYDYPNNSEDYVHRIGRTG 479
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 886 (316.9 bits), Expect = 9.6e-89, P = 9.6e-89
Identities = 184/427 (43%), Positives = 271/427 (63%)
Query: 24 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQA-FQ 82
KN Y E P VA MT +VE +RK +T +G+ IP PV SF+ F
Sbjct: 61 KNFYVESPAVAAMTDTEVEEYRKLRE------ITVEGK-------DIPKPVKSFRDVGFP 107
Query: 83 HYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQT 142
Y +L +++ FT P+PIQ+Q WP+ M G D+IGIA+TG+GKT ++LLPA++H + Q
Sbjct: 108 DY--VLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQP 165
Query: 143 TPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGGKEIEPQLEKIREGCH 201
++ GP VLV+APTRELA QI++E +K +K C+YGG PQ+ +++G
Sbjct: 166 M-LAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVE 224
Query: 202 ILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTS 261
I+IATPGRL D + + +L+ V+++VLDEADRMLD+GF+PQI K +I P+RQT+ S
Sbjct: 225 IVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWS 284
Query: 262 ATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDN-MDE 320
ATW K+V++++KK++ NP KV +GS DL A + Q + ++ E +K + L++ ++ MD
Sbjct: 285 ATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDIMDG 344
Query: 321 ERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATD 380
R ++VF+ K ++ L + S++GD SQ +R+ L + SG + I ATD
Sbjct: 345 SR--ILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATD 402
Query: 381 VASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPI 440
VA+RGLDV D+ +VINYDFP +E+YVHR+GRTGRAG G + T T + A E+ I
Sbjct: 403 VAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKELTNI 462
Query: 441 LEEGGHE 447
L+E G +
Sbjct: 463 LQEAGQK 469
Score = 837 (299.7 bits), Expect = 1.5e-83, P = 1.5e-83
Identities = 172/394 (43%), Positives = 254/394 (64%)
Query: 544 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQA-FQ 602
KN Y E P VA MT +VE +RK +T +G+ IP PV SF+ F
Sbjct: 61 KNFYVESPAVAAMTDTEVEEYRKLRE------ITVEGK-------DIPKPVKSFRDVGFP 107
Query: 603 HYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQT 662
Y +L +++ FT P+PIQ+Q WP+ M G D+IGIA+TG+GKT ++LLPA++H + Q
Sbjct: 108 DY--VLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQP 165
Query: 663 TPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGGKELEPQLEKIREGCH 721
++ GP VLV+APTRELA QI++E +K +K C+YGG PQ+ +++G
Sbjct: 166 M-LAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVE 224
Query: 722 ILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTS 781
I+IATPGRL D + + +L+ V+++VLDEADRMLD+GF+PQI K +I P+RQT+ S
Sbjct: 225 IVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWS 284
Query: 782 ATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDN-MDE 840
ATW K+V++++KK++ NP KV +GS DL A + Q + ++ E +K + L++ ++ MD
Sbjct: 285 ATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDIMDG 344
Query: 841 ERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATD 900
R ++VF+ K ++ L + S++GD SQ +R+ L + SG + I ATD
Sbjct: 345 SR--ILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATD 402
Query: 901 VASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
VA+RGLDV D+ +VINYDFP +E+YVHR+GRTG
Sbjct: 403 VAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTG 436
>WB|WBGene00013214 [details] [associations]
symbol:Y54G11A.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL034488 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
HSSP:P10081 PIR:T27176 RefSeq:NP_496973.1 ProteinModelPortal:Q9XVZ6
SMR:Q9XVZ6 STRING:Q9XVZ6 PaxDb:Q9XVZ6 EnsemblMetazoa:Y54G11A.3
GeneID:175083 KEGG:cel:CELE_Y54G11A.3 UCSC:Y54G11A.3 CTD:175083
WormBase:Y54G11A.3 InParanoid:Q9XVZ6 OMA:NGFEKPS NextBio:886680
Uniprot:Q9XVZ6
Length = 504
Score = 883 (315.9 bits), Expect = 2.0e-88, P = 2.0e-88
Identities = 194/459 (42%), Positives = 273/459 (59%)
Query: 6 ALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDEN 65
++ DR + + ++ I++++YK E N++PEQ++ + V + +
Sbjct: 20 SIEDRLKDENFSWMKPIVRDLYKIPNEQKNLSPEQLQELYTNGGVMKVYPFREESTV--- 76
Query: 66 PDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTG 125
+IP PV SF+QAF I+ ++ F PSPIQ+Q WP+L+SG D IG++QTG+G
Sbjct: 77 ---KIPPPVNSFEQAFGSNASIMGEIRKNGFEKPSPIQSQMWPLLLSGQDCIGVSQTGSG 133
Query: 126 KTFAFLLPALIHTHLQTTPIS-----ERAGPSVLVMAPTRELATQIEREVNKIDYKGLKA 180
KT AFLLPAL+H Q ++ P VLV++PTRELA QIE EV K Y G K+
Sbjct: 134 KTLAFLLPALLHIDAQLAQYEKNDEEQKPSPFVLVLSPTRELAQQIEGEVKKYSYNGYKS 193
Query: 181 VCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGF 240
VC+YGG Q+E R G I+IATPGRL D + I L +V++VVLDEADRMLD+GF
Sbjct: 194 VCLYGGGSRPEQVEACRGGVEIVIATPGRLTDLSNDGVISLASVTYVVLDEADRMLDMGF 253
Query: 241 EPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKII 300
E I + I P+R +TSATW + V+++ KY V GSLDL + +VTQ
Sbjct: 254 EVAIRRILFEIRPDRLVALTSATWPEGVRKLTDKYTKEAVMAVNGSLDLTSCKSVTQFFE 313
Query: 301 ILDEDEKKDWLME---FFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLS 357
+ D + + E F + K+++F+ K +SSD + S L+G S
Sbjct: 314 FVPHDSRFLRVCEIVNFLTAAHGQNYKMIIFVKSKVMADHLSSDFCMKGINSQGLHGGRS 373
Query: 358 QEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAG 417
Q DRE++L + SG +I VATD+ASRG+DVPD+THV+NYDFP IEEYVHRVGRTGRAG
Sbjct: 374 QSDREMSLNMLRSGEVQILVATDLASRGIDVPDITHVLNYDFPMDIEEYVHRVGRTGRAG 433
Query: 418 KSGESITLMTRKDWSHAHEIIPILEEGGHESYMIWRRDS 456
+ GE+++ + D S+ +I ILE+ E RRD+
Sbjct: 434 RKGEAMSFLWWNDRSNFEGLIQILEKSEQEVPDQLRRDA 472
Score = 837 (299.7 bits), Expect = 1.5e-83, P = 1.5e-83
Identities = 182/427 (42%), Positives = 253/427 (59%)
Query: 516 DPEPTMEELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSV 575
+PEP ++ DR + + ++ I++++YK E N++PEQ++ + V
Sbjct: 10 EPEPLKTIESSIEDRLKDENFSWMKPIVRDLYKIPNEQKNLSPEQLQELYTNGGVMKVYP 69
Query: 576 VTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHD 635
+ + +IP PV SF+QAF I+ ++ F PSPIQ+Q WP+L+SG D
Sbjct: 70 FREESTV------KIPPPVNSFEQAFGSNASIMGEIRKNGFEKPSPIQSQMWPLLLSGQD 123
Query: 636 MIGIAQTGTGKTFAFLLPALIHTHLQTTPIS-----ERAGPSVLVMAPTRELATQIEREV 690
IG++QTG+GKT AFLLPAL+H Q ++ P VLV++PTRELA QIE EV
Sbjct: 124 CIGVSQTGSGKTLAFLLPALLHIDAQLAQYEKNDEEQKPSPFVLVLSPTRELAQQIEGEV 183
Query: 691 NKIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLD 750
K Y G K+VC+YGG Q+E R G I+IATPGRL D + I L +V++VVLD
Sbjct: 184 KKYSYNGYKSVCLYGGGSRPEQVEACRGGVEIVIATPGRLTDLSNDGVISLASVTYVVLD 243
Query: 751 EADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLA 810
EADRMLD+GFE I + I P+R +TSATW + V+++ KY V GSLDL
Sbjct: 244 EADRMLDMGFEVAIRRILFEIRPDRLVALTSATWPEGVRKLTDKYTKEAVMAVNGSLDLT 303
Query: 811 ATHTVTQKIIILDEDEKKDWLME---FFDNMDEERDKVMVFMGRKASVSAMSSDLACQYR 867
+ +VTQ + D + + E F + K+++F+ K +SSD +
Sbjct: 304 SCKSVTQFFEFVPHDSRFLRVCEIVNFLTAAHGQNYKMIIFVKSKVMADHLSSDFCMKGI 363
Query: 868 KSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYV 927
S L+G SQ DRE++L + SG +I VATD+ASRG+DVPD+THV+NYDFP IEEYV
Sbjct: 364 NSQGLHGGRSQSDREMSLNMLRSGEVQILVATDLASRGIDVPDITHVLNYDFPMDIEEYV 423
Query: 928 HRVGRTG 934
HRVGRTG
Sbjct: 424 HRVGRTG 430
>UNIPROTKB|A4QSS5 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase DBP2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 EMBL:CM001233 GO:GO:0003723
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG47SWP6 RefSeq:XP_003712846.1
ProteinModelPortal:A4QSS5 EnsemblFungi:MGG_16901T0 GeneID:12985738
KEGG:mgr:MGG_16901 Uniprot:A4QSS5
Length = 548
Score = 882 (315.5 bits), Expect = 2.5e-88, P = 2.5e-88
Identities = 176/433 (40%), Positives = 280/433 (64%)
Query: 20 PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQ 79
PK K+ YKE P+V N + +V+ FR+++ S++V SD +P PV +F +
Sbjct: 83 PKFEKHFYKEHPDVTNRSQAEVDKFRREH---SMAVQGSD----------VPKPVETFDE 129
Query: 80 A-FQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHT 138
A F Y ++ +++ F P+ IQ+Q WP+ +SG D++GIA+TG+GKT + LPA++H
Sbjct: 130 AGFPRY--VMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHI 187
Query: 139 HLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGGKEIEPQLEKIR 197
+ Q ++ GP VL++APTRELA QI+ E++K ++ CVYGG PQ+ +
Sbjct: 188 NAQPL-LAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLS 246
Query: 198 EGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQT 257
G + IATPGRL D + +L+ V+++VLDEADRMLD+GFEPQI K I P+RQT
Sbjct: 247 RGVEVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQT 306
Query: 258 VMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDN 317
+M SATW K+V+ +A ++ + ++VN+GSLDL+A H +TQ + ++ E EK+D ++ +
Sbjct: 307 LMWSATWPKEVRNMAADFLQDFIQVNIGSLDLSANHRITQIVEVVSESEKRDRMIRHMEK 366
Query: 318 -MD--EERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYAR 374
MD + ++K+++F+G K ++ L + S++GD Q +R+ L+ +G +
Sbjct: 367 VMDGKDSKNKILIFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSP 426
Query: 375 ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHA 434
I VATDVASRG+DV ++THV+NYD+P++ E+Y+HR+GRTGRAG G +IT T ++ A
Sbjct: 427 IMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTENSKQA 486
Query: 435 HEIIPILEEGGHE 447
+++ +L+E E
Sbjct: 487 RDLLGVLQEAKQE 499
Score = 826 (295.8 bits), Expect = 2.2e-82, P = 2.2e-82
Identities = 165/400 (41%), Positives = 261/400 (65%)
Query: 540 PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQ 599
PK K+ YKE P+V N + +V+ FR+++ S++V SD +P PV +F +
Sbjct: 83 PKFEKHFYKEHPDVTNRSQAEVDKFRREH---SMAVQGSD----------VPKPVETFDE 129
Query: 600 A-FQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHT 658
A F Y ++ +++ F P+ IQ+Q WP+ +SG D++GIA+TG+GKT + LPA++H
Sbjct: 130 AGFPRY--VMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHI 187
Query: 659 HLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGGKELEPQLEKIR 717
+ Q ++ GP VL++APTRELA QI+ E++K ++ CVYGG PQ+ +
Sbjct: 188 NAQPL-LAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLS 246
Query: 718 EGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQT 777
G + IATPGRL D + +L+ V+++VLDEADRMLD+GFEPQI K I P+RQT
Sbjct: 247 RGVEVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQT 306
Query: 778 VMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDN 837
+M SATW K+V+ +A ++ + ++VN+GSLDL+A H +TQ + ++ E EK+D ++ +
Sbjct: 307 LMWSATWPKEVRNMAADFLQDFIQVNIGSLDLSANHRITQIVEVVSESEKRDRMIRHMEK 366
Query: 838 -MD--EERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYAR 894
MD + ++K+++F+G K ++ L + S++GD Q +R+ L+ +G +
Sbjct: 367 VMDGKDSKNKILIFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSP 426
Query: 895 ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
I VATDVASRG+DV ++THV+NYD+P++ E+Y+HR+GRTG
Sbjct: 427 IMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTG 466
>POMBASE|SPBP8B7.16c [details] [associations]
symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
NextBio:20802492 Uniprot:P24782
Length = 550
Score = 880 (314.8 bits), Expect = 4.1e-88, P = 4.1e-88
Identities = 187/433 (43%), Positives = 272/433 (62%)
Query: 16 WAREPKII--KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNP 73
W E I K+ YKE V N + +V +RK+ + G +P P
Sbjct: 74 WKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKE------IVVHG-------LNVPKP 120
Query: 74 VTSFKQA-FQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLL 132
VT+F++A F +Y +L++++ L F P+PIQ QAWP+ MSG DM+GI+ TG+GKT ++ L
Sbjct: 121 VTTFEEAGFPNY--VLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCL 178
Query: 133 PALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGGKEIEP 191
PA++H + Q +S GP VLV+APTRELA QI++E K ++ CVYGG P
Sbjct: 179 PAIVHINAQPL-LSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGP 237
Query: 192 QLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYI 251
Q+ + G I IATPGRL D + +L+ V+++VLDEADRMLD+GFEPQI K I
Sbjct: 238 QIRDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQI 297
Query: 252 NPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWL 311
P+RQTVM SATW K+VQR+A+ Y+ + ++V VGSLDLAA+H + Q + ++D +K+ L
Sbjct: 298 RPDRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARL 357
Query: 312 MEFFDNMDEERD-KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITS 370
+ + + ++RD KV++F G K ++ L + +++GD +Q++R+ L + +
Sbjct: 358 GKDIEEVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRT 417
Query: 371 GYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430
G + I VATDVASRG+DV +THV NYDFP + E+YVHR+GRTGRAG G + T T +
Sbjct: 418 GKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDN 477
Query: 431 WSHAHEIIPILEE 443
A E++ IL E
Sbjct: 478 AKQARELVSILSE 490
Score = 831 (297.6 bits), Expect = 6.4e-83, P = 6.4e-83
Identities = 176/404 (43%), Positives = 257/404 (63%)
Query: 536 WAREPKII--KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNP 593
W E I K+ YKE V N + +V +RK+ + G +P P
Sbjct: 74 WKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKE------IVVHG-------LNVPKP 120
Query: 594 VTSFKQA-FQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLL 652
VT+F++A F +Y +L++++ L F P+PIQ QAWP+ MSG DM+GI+ TG+GKT ++ L
Sbjct: 121 VTTFEEAGFPNY--VLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCL 178
Query: 653 PALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGGKELEP 711
PA++H + Q +S GP VLV+APTRELA QI++E K ++ CVYGG P
Sbjct: 179 PAIVHINAQPL-LSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGP 237
Query: 712 QLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYI 771
Q+ + G I IATPGRL D + +L+ V+++VLDEADRMLD+GFEPQI K I
Sbjct: 238 QIRDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQI 297
Query: 772 NPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWL 831
P+RQTVM SATW K+VQR+A+ Y+ + ++V VGSLDLAA+H + Q + ++D +K+ L
Sbjct: 298 RPDRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARL 357
Query: 832 MEFFDNMDEERD-KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITS 890
+ + + ++RD KV++F G K ++ L + +++GD +Q++R+ L + +
Sbjct: 358 GKDIEEVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRT 417
Query: 891 GYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
G + I VATDVASRG+DV +THV NYDFP + E+YVHR+GRTG
Sbjct: 418 GKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTG 461
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
Identities = 179/426 (42%), Positives = 267/426 (62%)
Query: 20 PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQ 79
P+ KN Y E P+V+ T E++E FR +T G+ ++P P+ F Q
Sbjct: 342 PRFEKNFYLEHPDVSKFTQEEIEKFRASFQ------MTVKGR-------EVPPPIMQFTQ 388
Query: 80 A-FQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHT 138
A F Y +++++ F P+PIQ+QAWPI + G D+IG+A+TG+GKT AFLLP+++H
Sbjct: 389 APFPGY--LMKEIIGAGFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSIVHI 446
Query: 139 HLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGGKEIEPQLEKIR 197
+ Q + E GP VLV+APTRELA QI+ E NK + CVYGG Q+ ++
Sbjct: 447 NAQPV-LREDDGPIVLVLAPTRELALQIQEETNKFGGTSQISNTCVYGGASKHTQVAALK 505
Query: 198 EGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQT 257
+G I+IATPGRL D + +L+ V+++VLDEADRMLD+GFEPQI K I P+RQT
Sbjct: 506 KGVEIVIATPGRLIDILESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQT 565
Query: 258 VMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDN 317
+M SATW K+VQ +A ++ + ++V++GS ++ A H V Q + + + EKK+ ++ F +
Sbjct: 566 LMFSATWPKEVQALAHDFLTDHIQVHIGSTEITANHNVRQIVEVCQDFEKKERMLSFLGS 625
Query: 318 MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICV 377
+ + +KV+VF + V + L KS ++G+ SQ +R+ L +G I +
Sbjct: 626 VGRD-EKVIVFAETRKGVDDLQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVPIMI 684
Query: 378 ATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEI 437
ATDVASRGLD+ D+ +V+NYDFP+ IE Y+HR+GRT RAG SG S +L+T + A+E+
Sbjct: 685 ATDVASRGLDIKDIKYVVNYDFPNTIEVYIHRIGRTARAGASGVSYSLLTTDNARLANEL 744
Query: 438 IPILEE 443
I +L E
Sbjct: 745 IKVLTE 750
Score = 813 (291.2 bits), Expect = 5.2e-81, P = 5.2e-81
Identities = 166/396 (41%), Positives = 248/396 (62%)
Query: 540 PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQ 599
P+ KN Y E P+V+ T E++E FR +T G+ ++P P+ F Q
Sbjct: 342 PRFEKNFYLEHPDVSKFTQEEIEKFRASFQ------MTVKGR-------EVPPPIMQFTQ 388
Query: 600 A-FQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHT 658
A F Y +++++ F P+PIQ+QAWPI + G D+IG+A+TG+GKT AFLLP+++H
Sbjct: 389 APFPGY--LMKEIIGAGFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSIVHI 446
Query: 659 HLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGGKELEPQLEKIR 717
+ Q + E GP VLV+APTRELA QI+ E NK + CVYGG Q+ ++
Sbjct: 447 NAQPV-LREDDGPIVLVLAPTRELALQIQEETNKFGGTSQISNTCVYGGASKHTQVAALK 505
Query: 718 EGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQT 777
+G I+IATPGRL D + +L+ V+++VLDEADRMLD+GFEPQI K I P+RQT
Sbjct: 506 KGVEIVIATPGRLIDILESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQT 565
Query: 778 VMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDN 837
+M SATW K+VQ +A ++ + ++V++GS ++ A H V Q + + + EKK+ ++ F +
Sbjct: 566 LMFSATWPKEVQALAHDFLTDHIQVHIGSTEITANHNVRQIVEVCQDFEKKERMLSFLGS 625
Query: 838 MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICV 897
+ + +KV+VF + V + L KS ++G+ SQ +R+ L +G I +
Sbjct: 626 VGRD-EKVIVFAETRKGVDDLQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVPIMI 684
Query: 898 ATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRT 933
ATDVASRGLD+ D+ +V+NYDFP+ IE Y+HR+GRT
Sbjct: 685 ATDVASRGLDIKDIKYVVNYDFPNTIEVYIHRIGRT 720
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 863 (308.9 bits), Expect = 2.6e-86, P = 2.6e-86
Identities = 188/443 (42%), Positives = 275/443 (62%)
Query: 9 DRKERDKW-ARE-PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENP 66
+R + KW E PK KN Y E PEVA +TP +VE R+K +++ +G
Sbjct: 34 ERLRKKKWDLNELPKFEKNFYVEHPEVARLTPYEVEELRRKKE---ITIRGMEG------ 84
Query: 67 DFQIPNPVTSFKQ-AFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTG 125
P PV +F Q +F Y ++ L + +FT P+PIQ Q +P+ +SG DM+GIAQTG+G
Sbjct: 85 ---CPKPVFAFHQCSFPQY--VMDALMDQNFTEPTPIQCQGFPLALSGRDMVGIAQTGSG 139
Query: 126 KTFAFLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDY---KGLKAV 181
KT A+LLPA++H + Q P ER GP LV+APTRELA Q+++ + DY LK+
Sbjct: 140 KTLAYLLPAIVHINHQ--PYLERGDGPICLVLAPTRELAQQVQQVAD--DYGKCSRLKST 195
Query: 182 CVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFE 241
C+YGG PQ+ + G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFE
Sbjct: 196 CIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFE 255
Query: 242 PQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIII 301
PQI K I P+RQT+M SATW K+V+++A+ ++ + V++NVG+L+L+A H + Q + +
Sbjct: 256 PQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLQDYVQINVGNLELSANHNILQIVDV 315
Query: 302 LDEDEKKDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQED 360
E EK L++ + M E+ +K ++F+ K ++ + + ++GD SQ +
Sbjct: 316 CMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPE 375
Query: 361 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSG 420
R+ L + SG A I +ATDVASRGLDV D+ VINYD+P+ E+YVHR+GRT R+ G
Sbjct: 376 RDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKG 435
Query: 421 ESITLMTRKDWSHAHEIIPILEE 443
+ T T + A E+I +LEE
Sbjct: 436 TAYTFFTPGNLKQARELIKVLEE 458
Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
Identities = 178/413 (43%), Positives = 260/413 (62%)
Query: 529 DRKERDKW-ARE-PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENP 586
+R + KW E PK KN Y E PEVA +TP +VE R+K +++ +G
Sbjct: 34 ERLRKKKWDLNELPKFEKNFYVEHPEVARLTPYEVEELRRKKE---ITIRGMEG------ 84
Query: 587 DFQIPNPVTSFKQ-AFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTG 645
P PV +F Q +F Y ++ L + +FT P+PIQ Q +P+ +SG DM+GIAQTG+G
Sbjct: 85 ---CPKPVFAFHQCSFPQY--VMDALMDQNFTEPTPIQCQGFPLALSGRDMVGIAQTGSG 139
Query: 646 KTFAFLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDY---KGLKAV 701
KT A+LLPA++H + Q P ER GP LV+APTRELA Q+++ + DY LK+
Sbjct: 140 KTLAYLLPAIVHINHQ--PYLERGDGPICLVLAPTRELAQQVQQVAD--DYGKCSRLKST 195
Query: 702 CVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFE 761
C+YGG PQ+ + G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFE
Sbjct: 196 CIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFE 255
Query: 762 PQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIII 821
PQI K I P+RQT+M SATW K+V+++A+ ++ + V++NVG+L+L+A H + Q + +
Sbjct: 256 PQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLQDYVQINVGNLELSANHNILQIVDV 315
Query: 822 LDEDEKKDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQED 880
E EK L++ + M E+ +K ++F+ K ++ + + ++GD SQ +
Sbjct: 316 CMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPE 375
Query: 881 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRT 933
R+ L + SG A I +ATDVASRGLDV D+ VINYD+P+ E+YVHR+GRT
Sbjct: 376 RDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRT 428
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 860 (307.8 bits), Expect = 5.4e-86, P = 5.4e-86
Identities = 179/424 (42%), Positives = 264/424 (62%)
Query: 24 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQH 83
KN Y E P V MT + V +R + DISV E D +P P+ F+ A +
Sbjct: 127 KNFYVESPTVQAMTEQDVAMYRTER-DISV----------EGRD--VPKPMKMFQDA--N 171
Query: 84 YPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQT 142
+P+ IL + L FT P+PIQAQ WP+ + G D+IGIA+TG+GKT A+LLPAL+H Q
Sbjct: 172 FPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQP 231
Query: 143 TPISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEIEPQLEKIREGCH 201
+ + GP VL++APTRELA QI+ E K + G+++ C+YGG PQ+ +R G
Sbjct: 232 R-LGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVE 290
Query: 202 ILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTS 261
I+IATPGRL D + +LK V+++VLDEADRMLD+GFEPQI K I P+RQT++ S
Sbjct: 291 IVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWS 350
Query: 262 ATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEE 321
ATW ++V+ +A++++ +P K +GS DL A ++ Q I I+ EK + L+ + +
Sbjct: 351 ATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQL-MD 409
Query: 322 RDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDV 381
K+++F+ K ++ L + +++GD +Q +R+ L + SG + I ATDV
Sbjct: 410 GSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDV 469
Query: 382 ASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPIL 441
A+RGLDV D+ V+NYDFP+ +E+Y+HR+GRTGRAG G + T T + A E++ IL
Sbjct: 470 AARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFARELVKIL 529
Query: 442 EEGG 445
+E G
Sbjct: 530 QEAG 533
Score = 802 (287.4 bits), Expect = 7.6e-80, P = 7.6e-80
Identities = 167/393 (42%), Positives = 247/393 (62%)
Query: 544 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQH 603
KN Y E P V MT + V +R + DISV E D +P P+ F+ A +
Sbjct: 127 KNFYVESPTVQAMTEQDVAMYRTER-DISV----------EGRD--VPKPMKMFQDA--N 171
Query: 604 YPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQT 662
+P+ IL + L FT P+PIQAQ WP+ + G D+IGIA+TG+GKT A+LLPAL+H Q
Sbjct: 172 FPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQP 231
Query: 663 TPISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKELEPQLEKIREGCH 721
+ + GP VL++APTRELA QI+ E K + G+++ C+YGG PQ+ +R G
Sbjct: 232 R-LGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVE 290
Query: 722 ILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTS 781
I+IATPGRL D + +LK V+++VLDEADRMLD+GFEPQI K I P+RQT++ S
Sbjct: 291 IVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWS 350
Query: 782 ATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEE 841
ATW ++V+ +A++++ +P K +GS DL A ++ Q I I+ EK + L+ + +
Sbjct: 351 ATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQL-MD 409
Query: 842 RDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDV 901
K+++F+ K ++ L + +++GD +Q +R+ L + SG + I ATDV
Sbjct: 410 GSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDV 469
Query: 902 ASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
A+RGLDV D+ V+NYDFP+ +E+Y+HR+GRTG
Sbjct: 470 AARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTG 502
>UNIPROTKB|F1PID8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:QQFPQPP EMBL:AAEX03007314
Ensembl:ENSCAFT00000002162 Uniprot:F1PID8
Length = 736
Score = 854 (305.7 bits), Expect = 2.4e-85, P = 2.4e-85
Identities = 186/443 (41%), Positives = 275/443 (62%)
Query: 9 DRKERDKW--AREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENP 66
+R + KW + PK KN Y E PEVA +TP +V+ R+K +I+V G +
Sbjct: 117 ERLRKKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKK-EITVR----GGDV---- 167
Query: 67 DFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTG 125
P PV +F A ++P+ ++ L + FT P+PIQ Q +P+ +SG DM+GIAQTG+G
Sbjct: 168 ---CPKPVFAFHHA--NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSG 222
Query: 126 KTFAFLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDY---KGLKAV 181
KT A+LLPA++H + Q P ER GP LV+APTRELA Q+++ + DY LK+
Sbjct: 223 KTLAYLLPAIVHINHQ--PYLERGDGPICLVLAPTRELAQQVQQVAD--DYGKCSRLKST 278
Query: 182 CVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFE 241
C+YGG PQ+ + G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFE
Sbjct: 279 CIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFE 338
Query: 242 PQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIII 301
PQI K I P+RQT+M SATW K+V+++A+ ++ + ++NVG+L+L+A H + Q + +
Sbjct: 339 PQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDV 398
Query: 302 LDEDEKKDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQED 360
E EK L++ + M E+ +K ++F+ K ++ + + ++GD SQ +
Sbjct: 399 CMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPE 458
Query: 361 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSG 420
R+ L + SG A I +ATDVASRGLDV D+ VINYD+P+ E+YVHR+GRT R+ G
Sbjct: 459 RDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKG 518
Query: 421 ESITLMTRKDWSHAHEIIPILEE 443
+ T T + A E+I +LEE
Sbjct: 519 TAYTFFTPGNLKQARELIKVLEE 541
Score = 810 (290.2 bits), Expect = 1.1e-82, Sum P(2) = 1.1e-82
Identities = 176/413 (42%), Positives = 260/413 (62%)
Query: 529 DRKERDKW--AREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENP 586
+R + KW + PK KN Y E PEVA +TP +V+ R+K +I+V G +
Sbjct: 117 ERLRKKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKK-EITVR----GGDV---- 167
Query: 587 DFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTG 645
P PV +F A ++P+ ++ L + FT P+PIQ Q +P+ +SG DM+GIAQTG+G
Sbjct: 168 ---CPKPVFAFHHA--NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSG 222
Query: 646 KTFAFLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDY---KGLKAV 701
KT A+LLPA++H + Q P ER GP LV+APTRELA Q+++ + DY LK+
Sbjct: 223 KTLAYLLPAIVHINHQ--PYLERGDGPICLVLAPTRELAQQVQQVAD--DYGKCSRLKST 278
Query: 702 CVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFE 761
C+YGG PQ+ + G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFE
Sbjct: 279 CIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFE 338
Query: 762 PQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIII 821
PQI K I P+RQT+M SATW K+V+++A+ ++ + ++NVG+L+L+A H + Q + +
Sbjct: 339 PQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDV 398
Query: 822 LDEDEKKDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQED 880
E EK L++ + M E+ +K ++F+ K ++ + + ++GD SQ +
Sbjct: 399 CMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPE 458
Query: 881 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRT 933
R+ L + SG A I +ATDVASRGLDV D+ VINYD+P+ E+YVHR+GRT
Sbjct: 459 RDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRT 511
Score = 38 (18.4 bits), Expect = 1.1e-82, Sum P(2) = 1.1e-82
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 153 VLVMAPTRELAT 164
VL+ +PTRE AT
Sbjct: 14 VLLPSPTREAAT 25
>UNIPROTKB|H3BLZ8 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0072358
"cardiovascular system development" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0009791
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:Z97056 HGNC:HGNC:2740
ChiTaRS:DDX17 GO:GO:0072358 ProteinModelPortal:H3BLZ8 SMR:H3BLZ8
Ensembl:ENST00000396821 Bgee:H3BLZ8 Uniprot:H3BLZ8
Length = 731
Score = 854 (305.7 bits), Expect = 2.4e-85, P = 2.4e-85
Identities = 186/443 (41%), Positives = 275/443 (62%)
Query: 9 DRKERDKW--AREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENP 66
+R + KW + PK KN Y E PEVA +TP +V+ R+K +I+V G +
Sbjct: 115 ERLRKKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKK-EITVR----GGDV---- 165
Query: 67 DFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTG 125
P PV +F A ++P+ ++ L + FT P+PIQ Q +P+ +SG DM+GIAQTG+G
Sbjct: 166 ---CPKPVFAFHHA--NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSG 220
Query: 126 KTFAFLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDY---KGLKAV 181
KT A+LLPA++H + Q P ER GP LV+APTRELA Q+++ + DY LK+
Sbjct: 221 KTLAYLLPAIVHINHQ--PYLERGDGPICLVLAPTRELAQQVQQVAD--DYGKCSRLKST 276
Query: 182 CVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFE 241
C+YGG PQ+ + G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFE
Sbjct: 277 CIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFE 336
Query: 242 PQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIII 301
PQI K I P+RQT+M SATW K+V+++A+ ++ + ++NVG+L+L+A H + Q + +
Sbjct: 337 PQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDV 396
Query: 302 LDEDEKKDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQED 360
E EK L++ + M E+ +K ++F+ K ++ + + ++GD SQ +
Sbjct: 397 CMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPE 456
Query: 361 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSG 420
R+ L + SG A I +ATDVASRGLDV D+ VINYD+P+ E+YVHR+GRT R+ G
Sbjct: 457 RDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKG 516
Query: 421 ESITLMTRKDWSHAHEIIPILEE 443
+ T T + A E+I +LEE
Sbjct: 517 TAYTFFTPGNLKQARELIKVLEE 539
Score = 810 (290.2 bits), Expect = 1.1e-82, Sum P(2) = 1.1e-82
Identities = 176/413 (42%), Positives = 260/413 (62%)
Query: 529 DRKERDKW--AREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENP 586
+R + KW + PK KN Y E PEVA +TP +V+ R+K +I+V G +
Sbjct: 115 ERLRKKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKK-EITVR----GGDV---- 165
Query: 587 DFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTG 645
P PV +F A ++P+ ++ L + FT P+PIQ Q +P+ +SG DM+GIAQTG+G
Sbjct: 166 ---CPKPVFAFHHA--NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSG 220
Query: 646 KTFAFLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDY---KGLKAV 701
KT A+LLPA++H + Q P ER GP LV+APTRELA Q+++ + DY LK+
Sbjct: 221 KTLAYLLPAIVHINHQ--PYLERGDGPICLVLAPTRELAQQVQQVAD--DYGKCSRLKST 276
Query: 702 CVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFE 761
C+YGG PQ+ + G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFE
Sbjct: 277 CIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFE 336
Query: 762 PQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIII 821
PQI K I P+RQT+M SATW K+V+++A+ ++ + ++NVG+L+L+A H + Q + +
Sbjct: 337 PQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDV 396
Query: 822 LDEDEKKDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQED 880
E EK L++ + M E+ +K ++F+ K ++ + + ++GD SQ +
Sbjct: 397 CMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPE 456
Query: 881 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRT 933
R+ L + SG A I +ATDVASRGLDV D+ VINYD+P+ E+YVHR+GRT
Sbjct: 457 RDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRT 509
Score = 38 (18.4 bits), Expect = 1.1e-82, Sum P(2) = 1.1e-82
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 153 VLVMAPTRELAT 164
VL+ +PTRE AT
Sbjct: 12 VLLPSPTREAAT 23
>UNIPROTKB|Q92841 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0033148 "positive
regulation of intracellular estrogen receptor signaling pathway"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
GO:GO:2001014 Uniprot:Q92841
Length = 729
Score = 854 (305.7 bits), Expect = 2.4e-85, P = 2.4e-85
Identities = 186/443 (41%), Positives = 275/443 (62%)
Query: 9 DRKERDKW--AREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENP 66
+R + KW + PK KN Y E PEVA +TP +V+ R+K +I+V G +
Sbjct: 115 ERLRKKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKK-EITVR----GGDV---- 165
Query: 67 DFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTG 125
P PV +F A ++P+ ++ L + FT P+PIQ Q +P+ +SG DM+GIAQTG+G
Sbjct: 166 ---CPKPVFAFHHA--NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSG 220
Query: 126 KTFAFLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDY---KGLKAV 181
KT A+LLPA++H + Q P ER GP LV+APTRELA Q+++ + DY LK+
Sbjct: 221 KTLAYLLPAIVHINHQ--PYLERGDGPICLVLAPTRELAQQVQQVAD--DYGKCSRLKST 276
Query: 182 CVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFE 241
C+YGG PQ+ + G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFE
Sbjct: 277 CIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFE 336
Query: 242 PQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIII 301
PQI K I P+RQT+M SATW K+V+++A+ ++ + ++NVG+L+L+A H + Q + +
Sbjct: 337 PQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDV 396
Query: 302 LDEDEKKDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQED 360
E EK L++ + M E+ +K ++F+ K ++ + + ++GD SQ +
Sbjct: 397 CMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPE 456
Query: 361 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSG 420
R+ L + SG A I +ATDVASRGLDV D+ VINYD+P+ E+YVHR+GRT R+ G
Sbjct: 457 RDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKG 516
Query: 421 ESITLMTRKDWSHAHEIIPILEE 443
+ T T + A E+I +LEE
Sbjct: 517 TAYTFFTPGNLKQARELIKVLEE 539
Score = 810 (290.2 bits), Expect = 1.1e-82, Sum P(2) = 1.1e-82
Identities = 176/413 (42%), Positives = 260/413 (62%)
Query: 529 DRKERDKW--AREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENP 586
+R + KW + PK KN Y E PEVA +TP +V+ R+K +I+V G +
Sbjct: 115 ERLRKKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKK-EITVR----GGDV---- 165
Query: 587 DFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTG 645
P PV +F A ++P+ ++ L + FT P+PIQ Q +P+ +SG DM+GIAQTG+G
Sbjct: 166 ---CPKPVFAFHHA--NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSG 220
Query: 646 KTFAFLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDY---KGLKAV 701
KT A+LLPA++H + Q P ER GP LV+APTRELA Q+++ + DY LK+
Sbjct: 221 KTLAYLLPAIVHINHQ--PYLERGDGPICLVLAPTRELAQQVQQVAD--DYGKCSRLKST 276
Query: 702 CVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFE 761
C+YGG PQ+ + G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFE
Sbjct: 277 CIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFE 336
Query: 762 PQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIII 821
PQI K I P+RQT+M SATW K+V+++A+ ++ + ++NVG+L+L+A H + Q + +
Sbjct: 337 PQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDV 396
Query: 822 LDEDEKKDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQED 880
E EK L++ + M E+ +K ++F+ K ++ + + ++GD SQ +
Sbjct: 397 CMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPE 456
Query: 881 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRT 933
R+ L + SG A I +ATDVASRGLDV D+ VINYD+P+ E+YVHR+GRT
Sbjct: 457 RDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRT 509
Score = 38 (18.4 bits), Expect = 1.1e-82, Sum P(2) = 1.1e-82
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 153 VLVMAPTRELAT 164
VL+ +PTRE AT
Sbjct: 12 VLLPSPTREAAT 23
>UNIPROTKB|F1SKQ0 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 OMA:QQFPQPP
EMBL:FP102457 Ensembl:ENSSSCT00000000110 Uniprot:F1SKQ0
Length = 736
Score = 854 (305.7 bits), Expect = 2.4e-85, P = 2.4e-85
Identities = 186/443 (41%), Positives = 275/443 (62%)
Query: 9 DRKERDKW--AREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENP 66
+R + KW + PK KN Y E PEVA +TP +V+ R+K +I+V G +
Sbjct: 117 ERLRKKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKK-EITVR----GGDV---- 167
Query: 67 DFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTG 125
P PV +F A ++P+ ++ L + FT P+PIQ Q +P+ +SG DM+GIAQTG+G
Sbjct: 168 ---CPKPVFAFHHA--NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSG 222
Query: 126 KTFAFLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDY---KGLKAV 181
KT A+LLPA++H + Q P ER GP LV+APTRELA Q+++ + DY LK+
Sbjct: 223 KTLAYLLPAIVHINHQ--PYLERGDGPICLVLAPTRELAQQVQQVAD--DYGKCSRLKST 278
Query: 182 CVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFE 241
C+YGG PQ+ + G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFE
Sbjct: 279 CIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFE 338
Query: 242 PQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIII 301
PQI K I P+RQT+M SATW K+V+++A+ ++ + ++NVG+L+L+A H + Q + +
Sbjct: 339 PQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDV 398
Query: 302 LDEDEKKDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQED 360
E EK L++ + M E+ +K ++F+ K ++ + + ++GD SQ +
Sbjct: 399 CMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPE 458
Query: 361 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSG 420
R+ L + SG A I +ATDVASRGLDV D+ VINYD+P+ E+YVHR+GRT R+ G
Sbjct: 459 RDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKG 518
Query: 421 ESITLMTRKDWSHAHEIIPILEE 443
+ T T + A E+I +LEE
Sbjct: 519 TAYTFFTPGNLKQARELIKVLEE 541
Score = 810 (290.2 bits), Expect = 1.1e-82, Sum P(2) = 1.1e-82
Identities = 176/413 (42%), Positives = 260/413 (62%)
Query: 529 DRKERDKW--AREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENP 586
+R + KW + PK KN Y E PEVA +TP +V+ R+K +I+V G +
Sbjct: 117 ERLRKKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKK-EITVR----GGDV---- 167
Query: 587 DFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTG 645
P PV +F A ++P+ ++ L + FT P+PIQ Q +P+ +SG DM+GIAQTG+G
Sbjct: 168 ---CPKPVFAFHHA--NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSG 222
Query: 646 KTFAFLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDY---KGLKAV 701
KT A+LLPA++H + Q P ER GP LV+APTRELA Q+++ + DY LK+
Sbjct: 223 KTLAYLLPAIVHINHQ--PYLERGDGPICLVLAPTRELAQQVQQVAD--DYGKCSRLKST 278
Query: 702 CVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFE 761
C+YGG PQ+ + G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFE
Sbjct: 279 CIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFE 338
Query: 762 PQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIII 821
PQI K I P+RQT+M SATW K+V+++A+ ++ + ++NVG+L+L+A H + Q + +
Sbjct: 339 PQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDV 398
Query: 822 LDEDEKKDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQED 880
E EK L++ + M E+ +K ++F+ K ++ + + ++GD SQ +
Sbjct: 399 CMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPE 458
Query: 881 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRT 933
R+ L + SG A I +ATDVASRGLDV D+ VINYD+P+ E+YVHR+GRT
Sbjct: 459 RDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRT 511
Score = 38 (18.4 bits), Expect = 1.1e-82, Sum P(2) = 1.1e-82
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 153 VLVMAPTRELAT 164
VL+ +PTRE AT
Sbjct: 14 VLLPSPTREAAT 25
>UNIPROTKB|A7E307 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
Length = 650
Score = 854 (305.7 bits), Expect = 2.4e-85, P = 2.4e-85
Identities = 186/443 (41%), Positives = 275/443 (62%)
Query: 9 DRKERDKW--AREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENP 66
+R + KW + PK KN Y E PEVA +TP +V+ R+K +I+V G +
Sbjct: 36 ERLRKKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKK-EITVR----GGDV---- 86
Query: 67 DFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTG 125
P PV +F A ++P+ ++ L + FT P+PIQ Q +P+ +SG DM+GIAQTG+G
Sbjct: 87 ---CPKPVFAFHHA--NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSG 141
Query: 126 KTFAFLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDY---KGLKAV 181
KT A+LLPA++H + Q P ER GP LV+APTRELA Q+++ + DY LK+
Sbjct: 142 KTLAYLLPAIVHINHQ--PYLERGDGPICLVLAPTRELAQQVQQVAD--DYGKCSRLKST 197
Query: 182 CVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFE 241
C+YGG PQ+ + G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFE
Sbjct: 198 CIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFE 257
Query: 242 PQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIII 301
PQI K I P+RQT+M SATW K+V+++A+ ++ + ++NVG+L+L+A H + Q + +
Sbjct: 258 PQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDV 317
Query: 302 LDEDEKKDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQED 360
E EK L++ + M E+ +K ++F+ K ++ + + ++GD SQ +
Sbjct: 318 CMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPE 377
Query: 361 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSG 420
R+ L + SG A I +ATDVASRGLDV D+ VINYD+P+ E+YVHR+GRT R+ G
Sbjct: 378 RDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKG 437
Query: 421 ESITLMTRKDWSHAHEIIPILEE 443
+ T T + A E+I +LEE
Sbjct: 438 TAYTFFTPGNLKQARELIKVLEE 460
Score = 810 (290.2 bits), Expect = 1.1e-80, P = 1.1e-80
Identities = 176/413 (42%), Positives = 260/413 (62%)
Query: 529 DRKERDKW--AREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENP 586
+R + KW + PK KN Y E PEVA +TP +V+ R+K +I+V G +
Sbjct: 36 ERLRKKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKK-EITVR----GGDV---- 86
Query: 587 DFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTG 645
P PV +F A ++P+ ++ L + FT P+PIQ Q +P+ +SG DM+GIAQTG+G
Sbjct: 87 ---CPKPVFAFHHA--NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSG 141
Query: 646 KTFAFLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDY---KGLKAV 701
KT A+LLPA++H + Q P ER GP LV+APTRELA Q+++ + DY LK+
Sbjct: 142 KTLAYLLPAIVHINHQ--PYLERGDGPICLVLAPTRELAQQVQQVAD--DYGKCSRLKST 197
Query: 702 CVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFE 761
C+YGG PQ+ + G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFE
Sbjct: 198 CIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFE 257
Query: 762 PQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIII 821
PQI K I P+RQT+M SATW K+V+++A+ ++ + ++NVG+L+L+A H + Q + +
Sbjct: 258 PQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDV 317
Query: 822 LDEDEKKDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQED 880
E EK L++ + M E+ +K ++F+ K ++ + + ++GD SQ +
Sbjct: 318 CMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPE 377
Query: 881 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRT 933
R+ L + SG A I +ATDVASRGLDV D+ VINYD+P+ E+YVHR+GRT
Sbjct: 378 RDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRT 430
>UNIPROTKB|E2RJ60 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
Length = 650
Score = 854 (305.7 bits), Expect = 2.4e-85, P = 2.4e-85
Identities = 186/443 (41%), Positives = 275/443 (62%)
Query: 9 DRKERDKW--AREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENP 66
+R + KW + PK KN Y E PEVA +TP +V+ R+K +I+V G +
Sbjct: 36 ERLRKKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKK-EITVR----GGDV---- 86
Query: 67 DFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTG 125
P PV +F A ++P+ ++ L + FT P+PIQ Q +P+ +SG DM+GIAQTG+G
Sbjct: 87 ---CPKPVFAFHHA--NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSG 141
Query: 126 KTFAFLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDY---KGLKAV 181
KT A+LLPA++H + Q P ER GP LV+APTRELA Q+++ + DY LK+
Sbjct: 142 KTLAYLLPAIVHINHQ--PYLERGDGPICLVLAPTRELAQQVQQVAD--DYGKCSRLKST 197
Query: 182 CVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFE 241
C+YGG PQ+ + G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFE
Sbjct: 198 CIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFE 257
Query: 242 PQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIII 301
PQI K I P+RQT+M SATW K+V+++A+ ++ + ++NVG+L+L+A H + Q + +
Sbjct: 258 PQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDV 317
Query: 302 LDEDEKKDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQED 360
E EK L++ + M E+ +K ++F+ K ++ + + ++GD SQ +
Sbjct: 318 CMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPE 377
Query: 361 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSG 420
R+ L + SG A I +ATDVASRGLDV D+ VINYD+P+ E+YVHR+GRT R+ G
Sbjct: 378 RDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKG 437
Query: 421 ESITLMTRKDWSHAHEIIPILEE 443
+ T T + A E+I +LEE
Sbjct: 438 TAYTFFTPGNLKQARELIKVLEE 460
Score = 810 (290.2 bits), Expect = 1.1e-80, P = 1.1e-80
Identities = 176/413 (42%), Positives = 260/413 (62%)
Query: 529 DRKERDKW--AREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENP 586
+R + KW + PK KN Y E PEVA +TP +V+ R+K +I+V G +
Sbjct: 36 ERLRKKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKK-EITVR----GGDV---- 86
Query: 587 DFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTG 645
P PV +F A ++P+ ++ L + FT P+PIQ Q +P+ +SG DM+GIAQTG+G
Sbjct: 87 ---CPKPVFAFHHA--NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSG 141
Query: 646 KTFAFLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDY---KGLKAV 701
KT A+LLPA++H + Q P ER GP LV+APTRELA Q+++ + DY LK+
Sbjct: 142 KTLAYLLPAIVHINHQ--PYLERGDGPICLVLAPTRELAQQVQQVAD--DYGKCSRLKST 197
Query: 702 CVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFE 761
C+YGG PQ+ + G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFE
Sbjct: 198 CIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFE 257
Query: 762 PQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIII 821
PQI K I P+RQT+M SATW K+V+++A+ ++ + ++NVG+L+L+A H + Q + +
Sbjct: 258 PQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDV 317
Query: 822 LDEDEKKDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQED 880
E EK L++ + M E+ +K ++F+ K ++ + + ++GD SQ +
Sbjct: 318 CMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPE 377
Query: 881 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRT 933
R+ L + SG A I +ATDVASRGLDV D+ VINYD+P+ E+YVHR+GRT
Sbjct: 378 RDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRT 430
>MGI|MGI:1914290 [details] [associations]
symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0072358 "cardiovascular system
development" evidence=IMP] [GO:2001014 "regulation of skeletal
muscle cell differentiation" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
CleanEx:MM_DDX17 Genevestigator:Q501J6
GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
Length = 650
Score = 854 (305.7 bits), Expect = 2.4e-85, P = 2.4e-85
Identities = 186/443 (41%), Positives = 275/443 (62%)
Query: 9 DRKERDKW--AREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENP 66
+R + KW + PK KN Y E PEVA +TP +V+ R+K +I+V G +
Sbjct: 36 ERLRKKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKK-EITVR----GGDV---- 86
Query: 67 DFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTG 125
P PV +F A ++P+ ++ L + FT P+PIQ Q +P+ +SG DM+GIAQTG+G
Sbjct: 87 ---CPKPVFAFHHA--NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSG 141
Query: 126 KTFAFLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDY---KGLKAV 181
KT A+LLPA++H + Q P ER GP LV+APTRELA Q+++ + DY LK+
Sbjct: 142 KTLAYLLPAIVHINHQ--PYLERGDGPICLVLAPTRELAQQVQQVAD--DYGKCSRLKST 197
Query: 182 CVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFE 241
C+YGG PQ+ + G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFE
Sbjct: 198 CIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFE 257
Query: 242 PQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIII 301
PQI K I P+RQT+M SATW K+V+++A+ ++ + ++NVG+L+L+A H + Q + +
Sbjct: 258 PQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDV 317
Query: 302 LDEDEKKDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQED 360
E EK L++ + M E+ +K ++F+ K ++ + + ++GD SQ +
Sbjct: 318 CMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPE 377
Query: 361 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSG 420
R+ L + SG A I +ATDVASRGLDV D+ VINYD+P+ E+YVHR+GRT R+ G
Sbjct: 378 RDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKG 437
Query: 421 ESITLMTRKDWSHAHEIIPILEE 443
+ T T + A E+I +LEE
Sbjct: 438 TAYTFFTPGNLKQARELIKVLEE 460
Score = 810 (290.2 bits), Expect = 1.1e-80, P = 1.1e-80
Identities = 176/413 (42%), Positives = 260/413 (62%)
Query: 529 DRKERDKW--AREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENP 586
+R + KW + PK KN Y E PEVA +TP +V+ R+K +I+V G +
Sbjct: 36 ERLRKKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKK-EITVR----GGDV---- 86
Query: 587 DFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTG 645
P PV +F A ++P+ ++ L + FT P+PIQ Q +P+ +SG DM+GIAQTG+G
Sbjct: 87 ---CPKPVFAFHHA--NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSG 141
Query: 646 KTFAFLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDY---KGLKAV 701
KT A+LLPA++H + Q P ER GP LV+APTRELA Q+++ + DY LK+
Sbjct: 142 KTLAYLLPAIVHINHQ--PYLERGDGPICLVLAPTRELAQQVQQVAD--DYGKCSRLKST 197
Query: 702 CVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFE 761
C+YGG PQ+ + G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFE
Sbjct: 198 CIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFE 257
Query: 762 PQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIII 821
PQI K I P+RQT+M SATW K+V+++A+ ++ + ++NVG+L+L+A H + Q + +
Sbjct: 258 PQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDV 317
Query: 822 LDEDEKKDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQED 880
E EK L++ + M E+ +K ++F+ K ++ + + ++GD SQ +
Sbjct: 318 CMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPE 377
Query: 881 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRT 933
R+ L + SG A I +ATDVASRGLDV D+ VINYD+P+ E+YVHR+GRT
Sbjct: 378 RDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRT 430
>ZFIN|ZDB-GENE-030131-925 [details] [associations]
symbol:ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
5" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-925 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:BX085195 IPI:IPI00488168 Ensembl:ENSDART00000055492
ArrayExpress:F1Q5L6 Bgee:F1Q5L6 Uniprot:F1Q5L6
Length = 617
Score = 854 (305.7 bits), Expect = 2.4e-85, P = 2.4e-85
Identities = 172/441 (39%), Positives = 276/441 (62%)
Query: 9 DRKERDKWARE--PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENP 66
DR + W + PK KN Y+E+P+VA + ++VE +R+ ++V DG
Sbjct: 41 DRLRKKHWNLDELPKFEKNFYQENPDVARRSAQEVEHYRRSKE---ITVKGRDG------ 91
Query: 67 DFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTG 125
P P+ F +A ++P+ ++ + ++T P+PIQAQ WP+ +SG DM+GIAQTG+G
Sbjct: 92 ----PKPIVKFHEA--NFPKYVMDVITKQNWTDPTPIQAQGWPVALSGKDMVGIAQTGSG 145
Query: 126 KTFAFLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCV 183
KT ++LLPA++H + Q P E GP LV+APTRELA Q+++ + +K+ C+
Sbjct: 146 KTLSYLLPAIVHINHQ--PFLEHGDGPICLVLAPTRELAQQVQQVAAEYGKASRIKSTCI 203
Query: 184 YGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQ 243
YGG PQ+ + G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFEPQ
Sbjct: 204 YGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQ 263
Query: 244 INKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD 303
I K I P+RQT+M SATW K+V+++A+ ++ +++NVG+L L+A H + Q + + +
Sbjct: 264 IRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYIQINVGALQLSANHNILQIVDVCN 323
Query: 304 EDEKKDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDRE 362
+ EK+D L+ + M E+ +K ++F+ K ++ + + ++GD +Q++R+
Sbjct: 324 DGEKEDKLIRLLEEIMSEKENKTIIFVETKRRCDDLTRRMRRDGWPAMGIHGDKNQQERD 383
Query: 363 IALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGES 422
L + G A I +ATDVASRGLDV D+ VIN+D+P++ E+Y+HR+GRT R+ K+G +
Sbjct: 384 WVLNEFKYGKAPILIATDVASRGLDVEDVKFVINFDYPNNSEDYIHRIGRTARSQKTGTA 443
Query: 423 ITLMTRKDWSHAHEIIPILEE 443
T T + AH+++ +L E
Sbjct: 444 YTFFTPNNMKQAHDLVSVLRE 464
Score = 802 (287.4 bits), Expect = 7.6e-80, P = 7.6e-80
Identities = 163/411 (39%), Positives = 259/411 (63%)
Query: 529 DRKERDKWARE--PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENP 586
DR + W + PK KN Y+E+P+VA + ++VE +R+ ++V DG
Sbjct: 41 DRLRKKHWNLDELPKFEKNFYQENPDVARRSAQEVEHYRRSKE---ITVKGRDG------ 91
Query: 587 DFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTG 645
P P+ F +A ++P+ ++ + ++T P+PIQAQ WP+ +SG DM+GIAQTG+G
Sbjct: 92 ----PKPIVKFHEA--NFPKYVMDVITKQNWTDPTPIQAQGWPVALSGKDMVGIAQTGSG 145
Query: 646 KTFAFLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCV 703
KT ++LLPA++H + Q P E GP LV+APTRELA Q+++ + +K+ C+
Sbjct: 146 KTLSYLLPAIVHINHQ--PFLEHGDGPICLVLAPTRELAQQVQQVAAEYGKASRIKSTCI 203
Query: 704 YGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQ 763
YGG PQ+ + G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFEPQ
Sbjct: 204 YGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQ 263
Query: 764 INKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD 823
I K I P+RQT+M SATW K+V+++A+ ++ +++NVG+L L+A H + Q + + +
Sbjct: 264 IRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYIQINVGALQLSANHNILQIVDVCN 323
Query: 824 EDEKKDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDRE 882
+ EK+D L+ + M E+ +K ++F+ K ++ + + ++GD +Q++R+
Sbjct: 324 DGEKEDKLIRLLEEIMSEKENKTIIFVETKRRCDDLTRRMRRDGWPAMGIHGDKNQQERD 383
Query: 883 IALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRT 933
L + G A I +ATDVASRGLDV D+ VIN+D+P++ E+Y+HR+GRT
Sbjct: 384 WVLNEFKYGKAPILIATDVASRGLDVEDVKFVINFDYPNNSEDYIHRIGRT 434
>FB|FBgn0003261 [details] [associations]
symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
Length = 719
Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
Identities = 172/431 (39%), Positives = 268/431 (62%)
Query: 24 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQH 83
KN Y+E P VAN +P +V+ +R++ +T GQ+ PNP+ F + H
Sbjct: 244 KNFYQEHPNVANRSPYEVQRYREEQE------ITVRGQV--------PNPIQDFSEV--H 287
Query: 84 YPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQT 142
P+ +++++ + P+ IQAQ WPI MSG + +GIA+TG+GKT ++LPA++H + Q
Sbjct: 288 LPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHINNQQ 347
Query: 143 TPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGGKEIEPQLEKIREGCH 201
P+ GP LV+APTRELA QI++ + ++ CV+GG Q+ ++ GC
Sbjct: 348 -PLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCE 406
Query: 202 ILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTS 261
I+IATPGRL DF+S S +LK +++VLDEADRMLD+GFEPQI K I P+RQT+M S
Sbjct: 407 IVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWS 466
Query: 262 ATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDE---DEK-KDWLMEFFDN 317
ATW K+V+++A+ ++ N +++N+GSL+L+A H + Q + + DE +EK K L + +D
Sbjct: 467 ATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYDT 526
Query: 318 MDEERDKVMVFMGRKASVSAMSSDLACQYRKSC-SLYGDLSQEDREIALEDITSGYARIC 376
E K+++F+ K V + + + C +++GD SQ +R+ L + SG + I
Sbjct: 527 -SESPGKIIIFVETKRRVDNLVRFIR-SFGVRCGAIHGDKSQSERDFVLREFRSGKSNIL 584
Query: 377 VATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHE 436
VATDVA+RGLDV + +VIN+D+P + E+Y+HR+GRTGR+ G S T+ + A
Sbjct: 585 VATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKA 644
Query: 437 IIPILEEGGHE 447
++ +L E E
Sbjct: 645 LVDVLREANQE 655
Score = 805 (288.4 bits), Expect = 5.1e-83, Sum P(2) = 5.1e-83
Identities = 164/398 (41%), Positives = 254/398 (63%)
Query: 544 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQH 603
KN Y+E P VAN +P +V+ +R++ +T GQ+ PNP+ F + H
Sbjct: 244 KNFYQEHPNVANRSPYEVQRYREEQE------ITVRGQV--------PNPIQDFSEV--H 287
Query: 604 YPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQT 662
P+ +++++ + P+ IQAQ WPI MSG + +GIA+TG+GKT ++LPA++H + Q
Sbjct: 288 LPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHINNQQ 347
Query: 663 TPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGGKELEPQLEKIREGCH 721
P+ GP LV+APTRELA QI++ + ++ CV+GG Q+ ++ GC
Sbjct: 348 -PLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCE 406
Query: 722 ILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTS 781
I+IATPGRL DF+S S +LK +++VLDEADRMLD+GFEPQI K I P+RQT+M S
Sbjct: 407 IVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWS 466
Query: 782 ATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDE---DEK-KDWLMEFFDN 837
ATW K+V+++A+ ++ N +++N+GSL+L+A H + Q + + DE +EK K L + +D
Sbjct: 467 ATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYDT 526
Query: 838 MDEERDKVMVFMGRKASVSAMSSDLACQYRKSC-SLYGDLSQEDREIALEDITSGYARIC 896
E K+++F+ K V + + + C +++GD SQ +R+ L + SG + I
Sbjct: 527 -SESPGKIIIFVETKRRVDNLVRFIR-SFGVRCGAIHGDKSQSERDFVLREFRSGKSNIL 584
Query: 897 VATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
VATDVA+RGLDV + +VIN+D+P + E+Y+HR+GRTG
Sbjct: 585 VATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTG 622
Score = 46 (21.3 bits), Expect = 5.1e-83, Sum P(2) = 5.1e-83
Identities = 15/60 (25%), Positives = 32/60 (53%)
Query: 254 NRQTVMTSATWNKDVQRVAKKYMVNPVKVN----VGSLDLAATHTVTQKIIILDEDEKKD 309
NR+T++ +T++ +Q +++ + K + V S+ A T T+K + D DE+ +
Sbjct: 79 NRETILFPSTYSS-LQAQSQRAFRDSSKPDSDDYVDSIPKAEQRTRTRKSLFNDPDERTE 137
>ZFIN|ZDB-GENE-030131-18 [details] [associations]
symbol:si:dkey-156n14.5 "si:dkey-156n14.5"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-18 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
KO:K13178 EMBL:CR626864 IPI:IPI00896916 RefSeq:XP_001923830.1
UniGene:Dr.75535 Ensembl:ENSDART00000129202 GeneID:556764
KEGG:dre:556764 NextBio:20881652 ArrayExpress:F1QBS1 Bgee:F1QBS1
Uniprot:F1QBS1
Length = 671
Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
Identities = 186/443 (41%), Positives = 277/443 (62%)
Query: 9 DRKERDKWARE--PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENP 66
DR + KW + PK KN Y E+PEV +M+ VE +R+K +I+V G
Sbjct: 40 DRLRKKKWDLDQLPKFEKNFYNENPEVHHMSQYDVEEYRRKR-EITVR---GSG------ 89
Query: 67 DFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTG 125
P PVT+F QA +P+ ++ L +F P+ IQAQ +P+ +SG DM+GIAQTG+G
Sbjct: 90 ---CPKPVTNFHQA--QFPQYVMDVLLQQNFKEPTAIQAQGFPLALSGRDMVGIAQTGSG 144
Query: 126 KTFAFLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDY-KG--LKAV 181
KT A+LLPA++H + Q P ER GP LV+APTRELA Q+++ DY K +K+
Sbjct: 145 KTLAYLLPAIVHINHQ--PYLERGDGPICLVLAPTRELAQQVQQVA--FDYGKSSRIKST 200
Query: 182 CVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFE 241
CVYGG PQ+ + G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFE
Sbjct: 201 CVYGGAPKGPQIRDLERGVEICIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFE 260
Query: 242 PQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIII 301
PQI K I P+RQT+M SATW K+V+++A+ ++ + V++N+G+L+L+A H + Q + +
Sbjct: 261 PQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLQDYVQINIGALELSANHNILQIVDV 320
Query: 302 LDEDEKKDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQED 360
E+EK + L++ + M E+ +K ++F+ K ++ + + ++GD SQ +
Sbjct: 321 CMENEKDNKLIQLMEEIMAEKENKTIIFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPE 380
Query: 361 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSG 420
R+ L + SG A I +ATDVASRGLDV D+ VINYD+P+ E+YVHR+GRT R+ G
Sbjct: 381 RDWVLTEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKG 440
Query: 421 ESITLMTRKDWSHAHEIIPILEE 443
+ T T + A +++ +LEE
Sbjct: 441 TAYTFFTPGNLRQARDLVRVLEE 463
Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
Identities = 181/429 (42%), Positives = 268/429 (62%)
Query: 513 RHIDPEPTMEELMALSDRKERDKWARE--PKIIKNVYKEDPEVANMTPEQVEAFRKKNND 570
R + P P ++ DR + KW + PK KN Y E+PEV +M+ VE +R+K +
Sbjct: 26 RAVPPPP--KKFGNPGDRLRKKKWDLDQLPKFEKNFYNENPEVHHMSQYDVEEYRRKR-E 82
Query: 571 ISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPI 629
I+V G P PVT+F QA +P+ ++ L +F P+ IQAQ +P+
Sbjct: 83 ITVR---GSG---------CPKPVTNFHQA--QFPQYVMDVLLQQNFKEPTAIQAQGFPL 128
Query: 630 LMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIER 688
+SG DM+GIAQTG+GKT A+LLPA++H + Q P ER GP LV+APTRELA Q+++
Sbjct: 129 ALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ--PYLERGDGPICLVLAPTRELAQQVQQ 186
Query: 689 EVNKIDY-KG--LKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVS 745
DY K +K+ CVYGG PQ+ + G I IATPGRL DF+ +L+ +
Sbjct: 187 VA--FDYGKSSRIKSTCVYGGAPKGPQIRDLERGVEICIATPGRLIDFLEVGKTNLRRCT 244
Query: 746 FVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVG 805
++VLDEADRMLD+GFEPQI K I P+RQT+M SATW K+V+++A+ ++ + V++N+G
Sbjct: 245 YLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLQDYVQINIG 304
Query: 806 SLDLAATHTVTQKIIILDEDEKKDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLAC 864
+L+L+A H + Q + + E+EK + L++ + M E+ +K ++F+ K ++ +
Sbjct: 305 ALELSANHNILQIVDVCMENEKDNKLIQLMEEIMAEKENKTIIFVETKKRCDELTRRMRR 364
Query: 865 QYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIE 924
+ ++GD SQ +R+ L + SG A I +ATDVASRGLDV D+ VINYD+P+ E
Sbjct: 365 DGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSE 424
Query: 925 EYVHRVGRT 933
+YVHR+GRT
Sbjct: 425 DYVHRIGRT 433
>UNIPROTKB|C9JMU5 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 EMBL:Z97056 IPI:IPI01022339
HGNC:HGNC:2740 ChiTaRS:DDX17 ProteinModelPortal:C9JMU5 SMR:C9JMU5
STRING:C9JMU5 PRIDE:C9JMU5 Ensembl:ENST00000381633
ArrayExpress:C9JMU5 Bgee:C9JMU5 Uniprot:C9JMU5
Length = 652
Score = 843 (301.8 bits), Expect = 3.4e-84, P = 3.4e-84
Identities = 186/445 (41%), Positives = 275/445 (61%)
Query: 9 DRKERDKW--AREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENP 66
+R + KW + PK KN Y E PEVA +TP +V+ R+K +I+V G +
Sbjct: 36 ERLRKKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKK-EITVR----GGDV---- 86
Query: 67 DFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTG 125
P PV +F A ++P+ ++ L + FT P+PIQ Q +P+ +SG DM+GIAQTG+G
Sbjct: 87 ---CPKPVFAFHHA--NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSG 141
Query: 126 KTFAFLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDY---KGLKAV 181
KT A+LLPA++H + Q P ER GP LV+APTRELA Q+++ + DY LK+
Sbjct: 142 KTLAYLLPAIVHINHQ--PYLERGDGPICLVLAPTRELAQQVQQVAD--DYGKCSRLKST 197
Query: 182 CVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFE 241
C+YGG PQ+ + G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFE
Sbjct: 198 CIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFE 257
Query: 242 PQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIII 301
PQI K I P+RQT+M SATW K+V+++A+ ++ + ++NVG+L+L+A H + Q + +
Sbjct: 258 PQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDV 317
Query: 302 LDEDEKKDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQED 360
E EK L++ + M E+ +K ++F+ K ++ + + ++GD SQ +
Sbjct: 318 CMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPE 377
Query: 361 REIALEDITSGYARICVATDVASRGL--DVPDLTHVINYDFPSHIEEYVHRVGRTGRAGK 418
R+ L + SG A I +ATDVASRGL DV D+ VINYD+P+ E+YVHR+GRT R+
Sbjct: 378 RDWVLNEFRSGKAPILIATDVASRGLGFDVEDVKFVINYDYPNSSEDYVHRIGRTARSTN 437
Query: 419 SGESITLMTRKDWSHAHEIIPILEE 443
G + T T + A E+I +LEE
Sbjct: 438 KGTAYTFFTPGNLKQARELIKVLEE 462
Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
Identities = 176/415 (42%), Positives = 260/415 (62%)
Query: 529 DRKERDKW--AREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENP 586
+R + KW + PK KN Y E PEVA +TP +V+ R+K +I+V G +
Sbjct: 36 ERLRKKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKK-EITVR----GGDV---- 86
Query: 587 DFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTG 645
P PV +F A ++P+ ++ L + FT P+PIQ Q +P+ +SG DM+GIAQTG+G
Sbjct: 87 ---CPKPVFAFHHA--NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSG 141
Query: 646 KTFAFLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDY---KGLKAV 701
KT A+LLPA++H + Q P ER GP LV+APTRELA Q+++ + DY LK+
Sbjct: 142 KTLAYLLPAIVHINHQ--PYLERGDGPICLVLAPTRELAQQVQQVAD--DYGKCSRLKST 197
Query: 702 CVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFE 761
C+YGG PQ+ + G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFE
Sbjct: 198 CIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFE 257
Query: 762 PQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIII 821
PQI K I P+RQT+M SATW K+V+++A+ ++ + ++NVG+L+L+A H + Q + +
Sbjct: 258 PQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDV 317
Query: 822 LDEDEKKDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQED 880
E EK L++ + M E+ +K ++F+ K ++ + + ++GD SQ +
Sbjct: 318 CMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPE 377
Query: 881 REIALEDITSGYARICVATDVASRGL--DVPDLTHVINYDFPSHIEEYVHRVGRT 933
R+ L + SG A I +ATDVASRGL DV D+ VINYD+P+ E+YVHR+GRT
Sbjct: 378 RDWVLNEFRSGKAPILIATDVASRGLGFDVEDVKFVINYDYPNSSEDYVHRIGRT 432
>UNIPROTKB|F1NM08 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:AADN02030017 IPI:IPI00680367 Ensembl:ENSGALT00000005586
ArrayExpress:F1NM08 Uniprot:F1NM08
Length = 595
Score = 837 (299.7 bits), Expect = 1.5e-83, P = 1.5e-83
Identities = 174/441 (39%), Positives = 269/441 (60%)
Query: 9 DRKERDKWARE--PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENP 66
++ + KW + PK KN Y+E P+V T ++VE +R VT G
Sbjct: 27 EKLTKKKWNLDELPKFEKNFYQEHPDVVRRTAQEVEQYRSSKE------VTVRGH----- 75
Query: 67 DFQIPNPVTSFKQAFQHYP-EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTG 125
P P+ +F +A ++P ++ ++ +FT P+ IQAQ WP+ +SG DM+G+AQTG+G
Sbjct: 76 --NCPKPIINFYEA--NFPANVMEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSG 131
Query: 126 KTFAFLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCV 183
KT ++LLPA++H + Q P ER GP LV+APTRELA Q+++ + LK+ C+
Sbjct: 132 KTLSYLLPAIVHINHQ--PFLERGDGPICLVLAPTRELAQQVQQVAAEYSRACRLKSTCI 189
Query: 184 YGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQ 243
YGG PQ+ + G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFEPQ
Sbjct: 190 YGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQ 249
Query: 244 INKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD 303
I K I P+RQT+M SATW K+V+++A+ ++ V +N+G+L+L+A H + Q + +
Sbjct: 250 IRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCH 309
Query: 304 EDEKKDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDRE 362
+ EK D L+ + M E+ +K +VF+ K ++ + + ++GD SQ++R+
Sbjct: 310 DVEKDDKLIRLMEEIMSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERD 369
Query: 363 IALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGES 422
L + G A I +ATDVASRGLDV D+ VINYD+P+ E+Y+HR+GRT R+ K+G +
Sbjct: 370 WVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTA 429
Query: 423 ITLMTRKDWSHAHEIIPILEE 443
T T + +++I +L E
Sbjct: 430 YTFFTPNNIKQVNDLISVLRE 450
Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
Identities = 166/411 (40%), Positives = 253/411 (61%)
Query: 529 DRKERDKWARE--PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENP 586
++ + KW + PK KN Y+E P+V T ++VE +R VT G
Sbjct: 27 EKLTKKKWNLDELPKFEKNFYQEHPDVVRRTAQEVEQYRSSKE------VTVRGH----- 75
Query: 587 DFQIPNPVTSFKQAFQHYP-EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTG 645
P P+ +F +A ++P ++ ++ +FT P+ IQAQ WP+ +SG DM+G+AQTG+G
Sbjct: 76 --NCPKPIINFYEA--NFPANVMEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSG 131
Query: 646 KTFAFLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCV 703
KT ++LLPA++H + Q P ER GP LV+APTRELA Q+++ + LK+ C+
Sbjct: 132 KTLSYLLPAIVHINHQ--PFLERGDGPICLVLAPTRELAQQVQQVAAEYSRACRLKSTCI 189
Query: 704 YGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQ 763
YGG PQ+ + G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFEPQ
Sbjct: 190 YGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQ 249
Query: 764 INKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD 823
I K I P+RQT+M SATW K+V+++A+ ++ V +N+G+L+L+A H + Q + +
Sbjct: 250 IRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCH 309
Query: 824 EDEKKDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDRE 882
+ EK D L+ + M E+ +K +VF+ K ++ + + ++GD SQ++R+
Sbjct: 310 DVEKDDKLIRLMEEIMSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERD 369
Query: 883 IALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRT 933
L + G A I +ATDVASRGLDV D+ VINYD+P+ E+Y+HR+GRT
Sbjct: 370 WVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRT 420
>UNIPROTKB|F1NXI3 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0050681 "androgen receptor binding" evidence=IEA] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0045944 GO:GO:0000122
GO:GO:0003713 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AADN02030017 IPI:IPI00598253
ProteinModelPortal:F1NXI3 Ensembl:ENSGALT00000034644
ArrayExpress:F1NXI3 Uniprot:F1NXI3
Length = 603
Score = 837 (299.7 bits), Expect = 1.5e-83, P = 1.5e-83
Identities = 174/441 (39%), Positives = 269/441 (60%)
Query: 9 DRKERDKWARE--PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENP 66
++ + KW + PK KN Y+E P+V T ++VE +R VT G
Sbjct: 35 EKLTKKKWNLDELPKFEKNFYQEHPDVVRRTAQEVEQYRSSKE------VTVRGH----- 83
Query: 67 DFQIPNPVTSFKQAFQHYP-EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTG 125
P P+ +F +A ++P ++ ++ +FT P+ IQAQ WP+ +SG DM+G+AQTG+G
Sbjct: 84 --NCPKPIINFYEA--NFPANVMEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSG 139
Query: 126 KTFAFLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCV 183
KT ++LLPA++H + Q P ER GP LV+APTRELA Q+++ + LK+ C+
Sbjct: 140 KTLSYLLPAIVHINHQ--PFLERGDGPICLVLAPTRELAQQVQQVAAEYSRACRLKSTCI 197
Query: 184 YGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQ 243
YGG PQ+ + G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFEPQ
Sbjct: 198 YGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQ 257
Query: 244 INKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD 303
I K I P+RQT+M SATW K+V+++A+ ++ V +N+G+L+L+A H + Q + +
Sbjct: 258 IRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCH 317
Query: 304 EDEKKDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDRE 362
+ EK D L+ + M E+ +K +VF+ K ++ + + ++GD SQ++R+
Sbjct: 318 DVEKDDKLIRLMEEIMSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERD 377
Query: 363 IALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGES 422
L + G A I +ATDVASRGLDV D+ VINYD+P+ E+Y+HR+GRT R+ K+G +
Sbjct: 378 WVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTA 437
Query: 423 ITLMTRKDWSHAHEIIPILEE 443
T T + +++I +L E
Sbjct: 438 YTFFTPNNIKQVNDLISVLRE 458
Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
Identities = 166/411 (40%), Positives = 253/411 (61%)
Query: 529 DRKERDKWARE--PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENP 586
++ + KW + PK KN Y+E P+V T ++VE +R VT G
Sbjct: 35 EKLTKKKWNLDELPKFEKNFYQEHPDVVRRTAQEVEQYRSSKE------VTVRGH----- 83
Query: 587 DFQIPNPVTSFKQAFQHYP-EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTG 645
P P+ +F +A ++P ++ ++ +FT P+ IQAQ WP+ +SG DM+G+AQTG+G
Sbjct: 84 --NCPKPIINFYEA--NFPANVMEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSG 139
Query: 646 KTFAFLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCV 703
KT ++LLPA++H + Q P ER GP LV+APTRELA Q+++ + LK+ C+
Sbjct: 140 KTLSYLLPAIVHINHQ--PFLERGDGPICLVLAPTRELAQQVQQVAAEYSRACRLKSTCI 197
Query: 704 YGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQ 763
YGG PQ+ + G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFEPQ
Sbjct: 198 YGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQ 257
Query: 764 INKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD 823
I K I P+RQT+M SATW K+V+++A+ ++ V +N+G+L+L+A H + Q + +
Sbjct: 258 IRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCH 317
Query: 824 EDEKKDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDRE 882
+ EK D L+ + M E+ +K +VF+ K ++ + + ++GD SQ++R+
Sbjct: 318 DVEKDDKLIRLMEEIMSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERD 377
Query: 883 IALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRT 933
L + G A I +ATDVASRGLDV D+ VINYD+P+ E+Y+HR+GRT
Sbjct: 378 WVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRT 428
>TAIR|locus:2084178 [details] [associations]
symbol:DRH1 "DEAD box RNA helicase 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
Length = 619
Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
Identities = 168/376 (44%), Positives = 244/376 (64%)
Query: 69 QIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTF 128
Q+P P+ SF +A PE+LR++ + F+ P+PIQAQ+WPI M G D++ IA+TG+GKT
Sbjct: 152 QVPPPLMSF-EATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTL 210
Query: 129 AFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGGK 187
+L+P +H LQ R GP++LV++PTRELATQI+ E K + C+YGG
Sbjct: 211 GYLIPGFLH--LQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGA 268
Query: 188 EIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT 247
PQL + G I++ATPGRLND + I L+ +S++VLDEADRMLD+GFEPQI K
Sbjct: 269 PKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKI 328
Query: 248 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLD-LAATHTVTQKIIILDEDE 306
I RQT+M +ATW K V+++A +VNP +VN+G++D L A ++TQ I ++ E
Sbjct: 329 VKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPME 388
Query: 307 KKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALE 366
K+ L + + E KV++F K ++ +L Q+ + +++GD SQ +R+ L
Sbjct: 389 KQRRLEQILRSQ-EPGSKVIIFCSTKRMCDQLTRNLTRQFG-AAAIHGDKSQPERDNVLN 446
Query: 367 DITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLM 426
SG + VATDVA+RGLDV D+ V+NYDFP+ +E+YVHR+GRTGRAG +G++ T
Sbjct: 447 QFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFF 506
Query: 427 TRKDWSHAHEIIPILE 442
+D HA ++I ILE
Sbjct: 507 GDQDSKHASDLIKILE 522
Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
Identities = 156/348 (44%), Positives = 226/348 (64%)
Query: 589 QIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTF 648
Q+P P+ SF +A PE+LR++ + F+ P+PIQAQ+WPI M G D++ IA+TG+GKT
Sbjct: 152 QVPPPLMSF-EATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTL 210
Query: 649 AFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGGK 707
+L+P +H LQ R GP++LV++PTRELATQI+ E K + C+YGG
Sbjct: 211 GYLIPGFLH--LQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGA 268
Query: 708 ELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT 767
PQL + G I++ATPGRLND + I L+ +S++VLDEADRMLD+GFEPQI K
Sbjct: 269 PKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKI 328
Query: 768 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLD-LAATHTVTQKIIILDEDE 826
I RQT+M +ATW K V+++A +VNP +VN+G++D L A ++TQ I ++ E
Sbjct: 329 VKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPME 388
Query: 827 KKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALE 886
K+ L + + E KV++F K ++ +L Q+ + +++GD SQ +R+ L
Sbjct: 389 KQRRLEQILRSQ-EPGSKVIIFCSTKRMCDQLTRNLTRQFG-AAAIHGDKSQPERDNVLN 446
Query: 887 DITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
SG + VATDVA+RGLDV D+ V+NYDFP+ +E+YVHR+GRTG
Sbjct: 447 QFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTG 494
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 832 (297.9 bits), Expect = 5.0e-83, P = 5.0e-83
Identities = 174/424 (41%), Positives = 264/424 (62%)
Query: 24 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQA-FQ 82
KN YK V T + E F N +T G Q+P P F++ F
Sbjct: 119 KNFYKPCDSVLARTVGETETFLTSNE------ITIKGD-------QVPTPSIEFEEGGFP 165
Query: 83 HYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQT 142
Y ++ ++ F P+ IQAQ WPI MSG D++G+AQTG+GKT A++LPA++H + Q
Sbjct: 166 DY--VMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAVVHINNQ- 222
Query: 143 TPISERA-GPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGGKEIEPQLEKIREGC 200
P ER GP LV+APTRELA QI++ + ++ C++GG Q + G
Sbjct: 223 -PRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDLERGV 281
Query: 201 HILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMT 260
I+IATPGRL DF+ R + LK +++VLDEADRMLD+GFEPQI K I P+RQ +M
Sbjct: 282 EIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQVLMW 341
Query: 261 SATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDE 320
SATW K+V+++A++++ N ++VN+GSL L+A H + Q + + DE+EK L++ ++
Sbjct: 342 SATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKLIKLLTDISA 401
Query: 321 ERD-KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVAT 379
E + K ++F+ K V ++ +++ Q ++C+++GD SQ++R+ L +G I VAT
Sbjct: 402 ENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVAT 461
Query: 380 DVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIP 439
DVA+RGLDV D+ VINYD+PS+ E+YVHR+GRTGR+ +G + TL T + + A+++I
Sbjct: 462 DVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKANDLIQ 521
Query: 440 ILEE 443
+L E
Sbjct: 522 VLRE 525
Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
Identities = 165/395 (41%), Positives = 246/395 (62%)
Query: 544 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQA-FQ 602
KN YK V T + E F N +T G Q+P P F++ F
Sbjct: 119 KNFYKPCDSVLARTVGETETFLTSNE------ITIKGD-------QVPTPSIEFEEGGFP 165
Query: 603 HYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQT 662
Y ++ ++ F P+ IQAQ WPI MSG D++G+AQTG+GKT A++LPA++H + Q
Sbjct: 166 DY--VMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAVVHINNQ- 222
Query: 663 TPISERA-GPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGGKELEPQLEKIREGC 720
P ER GP LV+APTRELA QI++ + ++ C++GG Q + G
Sbjct: 223 -PRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDLERGV 281
Query: 721 HILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMT 780
I+IATPGRL DF+ R + LK +++VLDEADRMLD+GFEPQI K I P+RQ +M
Sbjct: 282 EIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQVLMW 341
Query: 781 SATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDE 840
SATW K+V+++A++++ N ++VN+GSL L+A H + Q + + DE+EK L++ ++
Sbjct: 342 SATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKLIKLLTDISA 401
Query: 841 ERD-KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVAT 899
E + K ++F+ K V ++ +++ Q ++C+++GD SQ++R+ L +G I VAT
Sbjct: 402 ENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVAT 461
Query: 900 DVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
DVA+RGLDV D+ VINYD+PS+ E+YVHR+GRTG
Sbjct: 462 DVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTG 496
>SGD|S000005056 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
"nuclear polyadenylation-dependent mRNA catabolic process"
evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
Length = 546
Score = 830 (297.2 bits), Expect = 8.2e-83, P = 8.2e-83
Identities = 177/442 (40%), Positives = 273/442 (61%)
Query: 13 RDKWARE-PKII---KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDF 68
+ W E PK+ KN Y E V + + ++ FRK+N +T G
Sbjct: 60 KPNWDEELPKLPTFEKNFYVEHESVRDRSDSEIAQFRKENE------MTISGH------- 106
Query: 69 QIPNPVTSFKQA-FQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKT 127
IP P+T+F +A F Y +L +++ F P+ IQ Q WP+ +SG DM+GIA TG+GKT
Sbjct: 107 DIPKPITTFDEAGFPDY--VLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKT 164
Query: 128 FAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGG 186
++ LP ++H + Q ++ GP VLV+APTRELA QI+ E +K + ++ CVYGG
Sbjct: 165 LSYCLPGIVHINAQPL-LAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGG 223
Query: 187 KEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINK 246
Q+ + G I+IATPGRL D + +LK V+++VLDEADRMLD+GFEPQI K
Sbjct: 224 VPKSQQIRDLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRK 283
Query: 247 TSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDE 306
I P+RQT+M SATW K+V+++A Y+ +P++V VGSL+L+A+H +TQ + ++ + E
Sbjct: 284 IVDQIRPDRQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFE 343
Query: 307 KKDWLMEFFDNMDEERD-KVMVFMGRKASVSAMSSDLACQYRK----SCSLYGDLSQEDR 361
K+D L ++ + ++ + K ++F AS M D+ R+ + +++GD Q +R
Sbjct: 344 KRDRLNKYLETASQDNEYKTLIF----ASTKRMCDDITKYLREDGWPALAIHGDKDQRER 399
Query: 362 EIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGE 421
+ L++ +G + I VATDVA+RG+DV + +VINYD P +IE+YVHR+GRTGRAG +G
Sbjct: 400 DWVLQEFRNGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGT 459
Query: 422 SITLMTRKDWSHAHEIIPILEE 443
+I+ T ++ ++I I+ E
Sbjct: 460 AISFFTEQNKGLGAKLISIMRE 481
Score = 789 (282.8 bits), Expect = 1.8e-78, P = 1.8e-78
Identities = 168/413 (40%), Positives = 256/413 (61%)
Query: 533 RDKWARE-PKII---KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDF 588
+ W E PK+ KN Y E V + + ++ FRK+N +T G
Sbjct: 60 KPNWDEELPKLPTFEKNFYVEHESVRDRSDSEIAQFRKENE------MTISGH------- 106
Query: 589 QIPNPVTSFKQA-FQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKT 647
IP P+T+F +A F Y +L +++ F P+ IQ Q WP+ +SG DM+GIA TG+GKT
Sbjct: 107 DIPKPITTFDEAGFPDY--VLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKT 164
Query: 648 FAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGG 706
++ LP ++H + Q ++ GP VLV+APTRELA QI+ E +K + ++ CVYGG
Sbjct: 165 LSYCLPGIVHINAQPL-LAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGG 223
Query: 707 KELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINK 766
Q+ + G I+IATPGRL D + +LK V+++VLDEADRMLD+GFEPQI K
Sbjct: 224 VPKSQQIRDLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRK 283
Query: 767 TSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDE 826
I P+RQT+M SATW K+V+++A Y+ +P++V VGSL+L+A+H +TQ + ++ + E
Sbjct: 284 IVDQIRPDRQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFE 343
Query: 827 KKDWLMEFFDNMDEERD-KVMVFMGRKASVSAMSSDLACQYRK----SCSLYGDLSQEDR 881
K+D L ++ + ++ + K ++F AS M D+ R+ + +++GD Q +R
Sbjct: 344 KRDRLNKYLETASQDNEYKTLIF----ASTKRMCDDITKYLREDGWPALAIHGDKDQRER 399
Query: 882 EIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
+ L++ +G + I VATDVA+RG+DV + +VINYD P +IE+YVHR+GRTG
Sbjct: 400 DWVLQEFRNGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTG 452
>UNIPROTKB|F1MBQ8 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072332 "intrinsic apoptotic signaling pathway by p53
class mediator" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0060765 "regulation of androgen
receptor signaling pathway" evidence=IEA] [GO:0050681 "androgen
receptor binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IEA] [GO:0036002
"pre-mRNA binding" evidence=IEA] [GO:0033148 "positive regulation
of intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0030331 "estrogen receptor binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0000122 GO:GO:0003713 GO:GO:0033148 GO:GO:0043517
GO:GO:0060765 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
KO:K12823 OMA:IDAMSGY GeneTree:ENSGT00660000095174 CTD:1655
EMBL:DAAA02049347 IPI:IPI01002739 RefSeq:NP_001178324.1
UniGene:Bt.64934 ProteinModelPortal:F1MBQ8 SMR:F1MBQ8 PRIDE:F1MBQ8
Ensembl:ENSBTAT00000024514 GeneID:533700 KEGG:bta:533700
NextBio:20876124 ArrayExpress:F1MBQ8 Uniprot:F1MBQ8
Length = 614
Score = 826 (295.8 bits), Expect = 2.2e-82, P = 2.2e-82
Identities = 172/437 (39%), Positives = 268/437 (61%)
Query: 13 RDKWARE--PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQI 70
+ KW + PK KN Y+E P++A T ++VE +R+ +T G
Sbjct: 43 KKKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKE------ITVRGH-------NC 89
Query: 71 PNPVTSFKQAFQHYP-EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 129
P PV +F +A ++P ++ + +FT P+ IQAQ WP+ +SG DM+G+AQTG+GKT +
Sbjct: 90 PKPVLNFYEA--NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 147
Query: 130 FLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGK 187
+LLPA++H + Q P ER GP LV+APTRELA Q+++ + LK+ C+YGG
Sbjct: 148 YLLPAIVHINHQ--PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGA 205
Query: 188 EIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT 247
PQ+ + G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFEPQI K
Sbjct: 206 PKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI 265
Query: 248 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEK 307
I P+RQT+M SATW K+V+++A+ ++ + + +N+G+L+L+A H + Q + + + EK
Sbjct: 266 VDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEK 325
Query: 308 KDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALE 366
+ L+ + M E+ +K +VF+ K ++ + + ++GD SQ++R+ L
Sbjct: 326 DEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLN 385
Query: 367 DITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLM 426
+ G A I +ATDVASRGLDV D+ VINYD+P+ E+Y+HR+GRT R+ K+G + T
Sbjct: 386 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFF 445
Query: 427 TRKDWSHAHEIIPILEE 443
T + ++I +L E
Sbjct: 446 TPNNIKQVSDLISVLRE 462
Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
Identities = 164/407 (40%), Positives = 253/407 (62%)
Query: 533 RDKWARE--PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQI 590
+ KW + PK KN Y+E P++A T ++VE +R+ +T G
Sbjct: 43 KKKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKE------ITVRGH-------NC 89
Query: 591 PNPVTSFKQAFQHYP-EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 649
P PV +F +A ++P ++ + +FT P+ IQAQ WP+ +SG DM+G+AQTG+GKT +
Sbjct: 90 PKPVLNFYEA--NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 147
Query: 650 FLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGK 707
+LLPA++H + Q P ER GP LV+APTRELA Q+++ + LK+ C+YGG
Sbjct: 148 YLLPAIVHINHQ--PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGA 205
Query: 708 ELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT 767
PQ+ + G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFEPQI K
Sbjct: 206 PKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI 265
Query: 768 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEK 827
I P+RQT+M SATW K+V+++A+ ++ + + +N+G+L+L+A H + Q + + + EK
Sbjct: 266 VDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEK 325
Query: 828 KDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALE 886
+ L+ + M E+ +K +VF+ K ++ + + ++GD SQ++R+ L
Sbjct: 326 DEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLN 385
Query: 887 DITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRT 933
+ G A I +ATDVASRGLDV D+ VINYD+P+ E+Y+HR+GRT
Sbjct: 386 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRT 432
>UNIPROTKB|F1PEA6 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] [GO:0003712 "transcription cofactor
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AAEX03006361
Ensembl:ENSCAFT00000018595 Uniprot:F1PEA6
Length = 671
Score = 826 (295.8 bits), Expect = 2.2e-82, P = 2.2e-82
Identities = 172/437 (39%), Positives = 268/437 (61%)
Query: 13 RDKWARE--PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQI 70
+ KW + PK KN Y+E P++A T ++VE +R+ +T G
Sbjct: 100 KKKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKE------ITVRGH-------NC 146
Query: 71 PNPVTSFKQAFQHYP-EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 129
P PV +F +A ++P ++ + +FT P+ IQAQ WP+ +SG DM+G+AQTG+GKT +
Sbjct: 147 PKPVLNFYEA--NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 204
Query: 130 FLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGK 187
+LLPA++H + Q P ER GP LV+APTRELA Q+++ + LK+ C+YGG
Sbjct: 205 YLLPAIVHINHQ--PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGA 262
Query: 188 EIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT 247
PQ+ + G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFEPQI K
Sbjct: 263 PKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI 322
Query: 248 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEK 307
I P+RQT+M SATW K+V+++A+ ++ + + +N+G+L+L+A H + Q + + + EK
Sbjct: 323 VDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEK 382
Query: 308 KDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALE 366
+ L+ + M E+ +K +VF+ K ++ + + ++GD SQ++R+ L
Sbjct: 383 DEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLN 442
Query: 367 DITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLM 426
+ G A I +ATDVASRGLDV D+ VINYD+P+ E+Y+HR+GRT R+ K+G + T
Sbjct: 443 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFF 502
Query: 427 TRKDWSHAHEIIPILEE 443
T + ++I +L E
Sbjct: 503 TPNNIKQVSDLISVLRE 519
Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
Identities = 164/407 (40%), Positives = 253/407 (62%)
Query: 533 RDKWARE--PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQI 590
+ KW + PK KN Y+E P++A T ++VE +R+ +T G
Sbjct: 100 KKKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKE------ITVRGH-------NC 146
Query: 591 PNPVTSFKQAFQHYP-EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 649
P PV +F +A ++P ++ + +FT P+ IQAQ WP+ +SG DM+G+AQTG+GKT +
Sbjct: 147 PKPVLNFYEA--NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 204
Query: 650 FLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGK 707
+LLPA++H + Q P ER GP LV+APTRELA Q+++ + LK+ C+YGG
Sbjct: 205 YLLPAIVHINHQ--PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGA 262
Query: 708 ELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT 767
PQ+ + G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFEPQI K
Sbjct: 263 PKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI 322
Query: 768 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEK 827
I P+RQT+M SATW K+V+++A+ ++ + + +N+G+L+L+A H + Q + + + EK
Sbjct: 323 VDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEK 382
Query: 828 KDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALE 886
+ L+ + M E+ +K +VF+ K ++ + + ++GD SQ++R+ L
Sbjct: 383 DEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLN 442
Query: 887 DITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRT 933
+ G A I +ATDVASRGLDV D+ VINYD+P+ E+Y+HR+GRT
Sbjct: 443 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRT 489
>UNIPROTKB|J3KTA4 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HGNC:HGNC:2746 ChiTaRS:DDX5 ProteinModelPortal:J3KTA4
Ensembl:ENST00000578804 Uniprot:J3KTA4
Length = 614
Score = 826 (295.8 bits), Expect = 2.2e-82, P = 2.2e-82
Identities = 172/437 (39%), Positives = 268/437 (61%)
Query: 13 RDKWARE--PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQI 70
+ KW + PK KN Y+E P++A T ++VE +R+ +T G
Sbjct: 43 KKKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKE------ITVRGH-------NC 89
Query: 71 PNPVTSFKQAFQHYP-EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 129
P PV +F +A ++P ++ + +FT P+ IQAQ WP+ +SG DM+G+AQTG+GKT +
Sbjct: 90 PKPVLNFYEA--NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 147
Query: 130 FLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGK 187
+LLPA++H + Q P ER GP LV+APTRELA Q+++ + LK+ C+YGG
Sbjct: 148 YLLPAIVHINHQ--PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGA 205
Query: 188 EIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT 247
PQ+ + G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFEPQI K
Sbjct: 206 PKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI 265
Query: 248 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEK 307
I P+RQT+M SATW K+V+++A+ ++ + + +N+G+L+L+A H + Q + + + EK
Sbjct: 266 VDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEK 325
Query: 308 KDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALE 366
+ L+ + M E+ +K +VF+ K ++ + + ++GD SQ++R+ L
Sbjct: 326 DEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLN 385
Query: 367 DITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLM 426
+ G A I +ATDVASRGLDV D+ VINYD+P+ E+Y+HR+GRT R+ K+G + T
Sbjct: 386 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFF 445
Query: 427 TRKDWSHAHEIIPILEE 443
T + ++I +L E
Sbjct: 446 TPNNIKQVSDLISVLRE 462
Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
Identities = 164/407 (40%), Positives = 253/407 (62%)
Query: 533 RDKWARE--PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQI 590
+ KW + PK KN Y+E P++A T ++VE +R+ +T G
Sbjct: 43 KKKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKE------ITVRGH-------NC 89
Query: 591 PNPVTSFKQAFQHYP-EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 649
P PV +F +A ++P ++ + +FT P+ IQAQ WP+ +SG DM+G+AQTG+GKT +
Sbjct: 90 PKPVLNFYEA--NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 147
Query: 650 FLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGK 707
+LLPA++H + Q P ER GP LV+APTRELA Q+++ + LK+ C+YGG
Sbjct: 148 YLLPAIVHINHQ--PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGA 205
Query: 708 ELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT 767
PQ+ + G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFEPQI K
Sbjct: 206 PKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI 265
Query: 768 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEK 827
I P+RQT+M SATW K+V+++A+ ++ + + +N+G+L+L+A H + Q + + + EK
Sbjct: 266 VDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEK 325
Query: 828 KDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALE 886
+ L+ + M E+ +K +VF+ K ++ + + ++GD SQ++R+ L
Sbjct: 326 DEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLN 385
Query: 887 DITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRT 933
+ G A I +ATDVASRGLDV D+ VINYD+P+ E+Y+HR+GRT
Sbjct: 386 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRT 432
>UNIPROTKB|P17844 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0005516 "calmodulin binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=IEA] [GO:0045069 "regulation of viral genome replication"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IMP;NAS]
[GO:0016049 "cell growth" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IMP] [GO:0072332
"intrinsic apoptotic signaling pathway by p53 class mediator"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA] [GO:2001014
"regulation of skeletal muscle cell differentiation" evidence=ISS]
[GO:0045667 "regulation of osteoblast differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0050681
"androgen receptor binding" evidence=IDA] [GO:0060765 "regulation
of androgen receptor signaling pathway" evidence=IMP] [GO:0033148
"positive regulation of intracellular estrogen receptor signaling
pathway" evidence=IDA] [GO:0003713 "transcription coactivator
activity" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0030331 "estrogen receptor binding" evidence=IDA] [GO:0036002
"pre-mRNA binding" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0016049 GO:GO:0001701 GO:GO:0045944
GO:GO:0006351 GO:GO:0000122 GO:GO:0003713 EMBL:CH471109
GO:GO:0033148 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0045069 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY HOVERGEN:HBG015893
GO:GO:2001014 EMBL:X52104 EMBL:AF015812 EMBL:BT006943 EMBL:AB451257
EMBL:BC016027 EMBL:X15729 EMBL:AJ010931 IPI:IPI00017617 PIR:JC1087
RefSeq:NP_004387.1 UniGene:Hs.279806 PDB:3FE2 PDB:4A4D PDBsum:3FE2
PDBsum:4A4D ProteinModelPortal:P17844 SMR:P17844 DIP:DIP-29844N
IntAct:P17844 MINT:MINT-5000516 STRING:P17844 PhosphoSite:P17844
DMDM:129383 SWISS-2DPAGE:P17844 PaxDb:P17844 PeptideAtlas:P17844
PRIDE:P17844 DNASU:1655 Ensembl:ENST00000225792
Ensembl:ENST00000574715 GeneID:1655 KEGG:hsa:1655 UCSC:uc002jej.2
CTD:1655 GeneCards:GC17M062494 HGNC:HGNC:2746 HPA:CAB005868
HPA:HPA020043 MIM:180630 neXtProt:NX_P17844 PharmGKB:PA27228
InParanoid:P17844 OrthoDB:EOG4BVRTM PhylomeDB:P17844 ChiTaRS:DDX5
EvolutionaryTrace:P17844 GenomeRNAi:1655 NextBio:6816
ArrayExpress:P17844 Bgee:P17844 CleanEx:HS_DDX5
Genevestigator:P17844 GermOnline:ENSG00000108654 Uniprot:P17844
Length = 614
Score = 826 (295.8 bits), Expect = 2.2e-82, P = 2.2e-82
Identities = 172/437 (39%), Positives = 268/437 (61%)
Query: 13 RDKWARE--PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQI 70
+ KW + PK KN Y+E P++A T ++VE +R+ +T G
Sbjct: 43 KKKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKE------ITVRGH-------NC 89
Query: 71 PNPVTSFKQAFQHYP-EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 129
P PV +F +A ++P ++ + +FT P+ IQAQ WP+ +SG DM+G+AQTG+GKT +
Sbjct: 90 PKPVLNFYEA--NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 147
Query: 130 FLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGK 187
+LLPA++H + Q P ER GP LV+APTRELA Q+++ + LK+ C+YGG
Sbjct: 148 YLLPAIVHINHQ--PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGA 205
Query: 188 EIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT 247
PQ+ + G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFEPQI K
Sbjct: 206 PKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI 265
Query: 248 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEK 307
I P+RQT+M SATW K+V+++A+ ++ + + +N+G+L+L+A H + Q + + + EK
Sbjct: 266 VDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEK 325
Query: 308 KDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALE 366
+ L+ + M E+ +K +VF+ K ++ + + ++GD SQ++R+ L
Sbjct: 326 DEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLN 385
Query: 367 DITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLM 426
+ G A I +ATDVASRGLDV D+ VINYD+P+ E+Y+HR+GRT R+ K+G + T
Sbjct: 386 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFF 445
Query: 427 TRKDWSHAHEIIPILEE 443
T + ++I +L E
Sbjct: 446 TPNNIKQVSDLISVLRE 462
Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
Identities = 164/407 (40%), Positives = 253/407 (62%)
Query: 533 RDKWARE--PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQI 590
+ KW + PK KN Y+E P++A T ++VE +R+ +T G
Sbjct: 43 KKKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKE------ITVRGH-------NC 89
Query: 591 PNPVTSFKQAFQHYP-EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 649
P PV +F +A ++P ++ + +FT P+ IQAQ WP+ +SG DM+G+AQTG+GKT +
Sbjct: 90 PKPVLNFYEA--NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 147
Query: 650 FLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGK 707
+LLPA++H + Q P ER GP LV+APTRELA Q+++ + LK+ C+YGG
Sbjct: 148 YLLPAIVHINHQ--PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGA 205
Query: 708 ELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT 767
PQ+ + G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFEPQI K
Sbjct: 206 PKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI 265
Query: 768 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEK 827
I P+RQT+M SATW K+V+++A+ ++ + + +N+G+L+L+A H + Q + + + EK
Sbjct: 266 VDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEK 325
Query: 828 KDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALE 886
+ L+ + M E+ +K +VF+ K ++ + + ++GD SQ++R+ L
Sbjct: 326 DEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLN 385
Query: 887 DITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRT 933
+ G A I +ATDVASRGLDV D+ VINYD+P+ E+Y+HR+GRT
Sbjct: 386 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRT 432
>UNIPROTKB|Q5R4I9 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9601 "Pongo abelii" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 KO:K12823 HOVERGEN:HBG015893
GO:GO:2001014 HSSP:P10081 CTD:1655 EMBL:CR861259
RefSeq:NP_001126958.1 UniGene:Pab.18500 ProteinModelPortal:Q5R4I9
PRIDE:Q5R4I9 GeneID:100173977 KEGG:pon:100173977 InParanoid:Q5R4I9
Uniprot:Q5R4I9
Length = 614
Score = 826 (295.8 bits), Expect = 2.2e-82, P = 2.2e-82
Identities = 172/437 (39%), Positives = 268/437 (61%)
Query: 13 RDKWARE--PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQI 70
+ KW + PK KN Y+E P++A T ++VE +R+ +T G
Sbjct: 43 KKKWDLDEPPKFEKNFYQEHPDLARRTAQEVETYRRSKE------ITVRGH-------NC 89
Query: 71 PNPVTSFKQAFQHYP-EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 129
P PV +F +A ++P ++ + +FT P+ IQAQ WP+ +SG DM+G+AQTG+GKT +
Sbjct: 90 PKPVLNFYEA--NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 147
Query: 130 FLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGK 187
+LLPA++H + Q P ER GP LV+APTRELA Q+++ + LK+ C+YGG
Sbjct: 148 YLLPAIVHINHQ--PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGA 205
Query: 188 EIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT 247
PQ+ + G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFEPQI K
Sbjct: 206 PKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI 265
Query: 248 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEK 307
I P+RQT+M SATW K+V+++A+ ++ + + +N+G+L+L+A H + Q + + + EK
Sbjct: 266 VDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEK 325
Query: 308 KDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALE 366
+ L+ + M E+ +K +VF+ K ++ + + ++GD SQ++R+ L
Sbjct: 326 DEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLN 385
Query: 367 DITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLM 426
+ G A I +ATDVASRGLDV D+ VINYD+P+ E+Y+HR+GRT R+ K+G + T
Sbjct: 386 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFF 445
Query: 427 TRKDWSHAHEIIPILEE 443
T + ++I +L E
Sbjct: 446 TPNNIKQVSDLISVLRE 462
Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
Identities = 164/407 (40%), Positives = 253/407 (62%)
Query: 533 RDKWARE--PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQI 590
+ KW + PK KN Y+E P++A T ++VE +R+ +T G
Sbjct: 43 KKKWDLDEPPKFEKNFYQEHPDLARRTAQEVETYRRSKE------ITVRGH-------NC 89
Query: 591 PNPVTSFKQAFQHYP-EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 649
P PV +F +A ++P ++ + +FT P+ IQAQ WP+ +SG DM+G+AQTG+GKT +
Sbjct: 90 PKPVLNFYEA--NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 147
Query: 650 FLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGK 707
+LLPA++H + Q P ER GP LV+APTRELA Q+++ + LK+ C+YGG
Sbjct: 148 YLLPAIVHINHQ--PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGA 205
Query: 708 ELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT 767
PQ+ + G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFEPQI K
Sbjct: 206 PKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI 265
Query: 768 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEK 827
I P+RQT+M SATW K+V+++A+ ++ + + +N+G+L+L+A H + Q + + + EK
Sbjct: 266 VDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEK 325
Query: 828 KDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALE 886
+ L+ + M E+ +K +VF+ K ++ + + ++GD SQ++R+ L
Sbjct: 326 DEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLN 385
Query: 887 DITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRT 933
+ G A I +ATDVASRGLDV D+ VINYD+P+ E+Y+HR+GRT
Sbjct: 386 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRT 432
>GENEDB_PFALCIPARUM|PF14_0437 [details] [associations]
symbol:PF14_0437 "helicase, truncated,
putative" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_001348611.2 ProteinModelPortal:Q8IL13 IntAct:Q8IL13
MINT:MINT-1661155 PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA
GeneID:812019 KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
Identities = 177/423 (41%), Positives = 263/423 (62%)
Query: 24 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSF-KQAFQ 82
KN YKE +++ ++ ++V+ R K+ ++++ +G EN +P PV S K F
Sbjct: 74 KNFYKEHEDISKLSTKEVKEIRDKHK---ITIL--EG---EN----VPKPVVSINKIGFP 121
Query: 83 HYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQT 142
Y +++ L+N + P+PIQ Q WPI +SG DMIG A+TG+GKT AF+LPA +H Q
Sbjct: 122 DY--VIKSLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQP 179
Query: 143 TPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGGKEIEPQLEKIREGCH 201
+ GP VLV+APTRELA QI +E K + ++ C YGG Q+ +++G H
Sbjct: 180 N-LKYGDGPIVLVLAPTRELAEQIRQECIKFSTESKIRNTCAYGGVPKSGQIYALKQGVH 238
Query: 202 ILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTS 261
ILIA PGRL D + + +L V+++VLDEAD+MLD+GFE QI K I P+RQT+M S
Sbjct: 239 ILIACPGRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQIRPDRQTLMWS 298
Query: 262 ATWNKDVQRVAKKYMVN-PVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDE 320
ATW K+VQ +AK P++VNVGSL L A ++ Q+I +L+E EK L + +
Sbjct: 299 ATWPKEVQALAKDLCKEQPIQVNVGSLTLTACRSIKQEIYLLEEHEKIGNLKSLLQRIFK 358
Query: 321 ERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATD 380
+ D+++VF+ K + ++ L + ++GD QE+R L + +G + I +ATD
Sbjct: 359 DNDRIIVFVETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKTGKSPIMIATD 418
Query: 381 VASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPI 440
VASRGLD+ ++ +VIN+DFP+ IE+YVHR+GRTGRAG G S T +T + A +++ I
Sbjct: 419 VASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADKYRLAKDLVKI 478
Query: 441 LEE 443
L E
Sbjct: 479 LRE 481
Score = 774 (277.5 bits), Expect = 7.1e-77, P = 7.1e-77
Identities = 166/394 (42%), Positives = 247/394 (62%)
Query: 544 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSF-KQAFQ 602
KN YKE +++ ++ ++V+ R K+ ++++ +G EN +P PV S K F
Sbjct: 74 KNFYKEHEDISKLSTKEVKEIRDKHK---ITIL--EG---EN----VPKPVVSINKIGFP 121
Query: 603 HYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQT 662
Y +++ L+N + P+PIQ Q WPI +SG DMIG A+TG+GKT AF+LPA +H Q
Sbjct: 122 DY--VIKSLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQP 179
Query: 663 TPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGGKELEPQLEKIREGCH 721
+ GP VLV+APTRELA QI +E K + ++ C YGG Q+ +++G H
Sbjct: 180 N-LKYGDGPIVLVLAPTRELAEQIRQECIKFSTESKIRNTCAYGGVPKSGQIYALKQGVH 238
Query: 722 ILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTS 781
ILIA PGRL D + + +L V+++VLDEAD+MLD+GFE QI K I P+RQT+M S
Sbjct: 239 ILIACPGRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQIRPDRQTLMWS 298
Query: 782 ATWNKDVQRVAKKYMVN-PVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDE 840
ATW K+VQ +AK P++VNVGSL L A ++ Q+I +L+E EK L + +
Sbjct: 299 ATWPKEVQALAKDLCKEQPIQVNVGSLTLTACRSIKQEIYLLEEHEKIGNLKSLLQRIFK 358
Query: 841 ERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATD 900
+ D+++VF+ K + ++ L + ++GD QE+R L + +G + I +ATD
Sbjct: 359 DNDRIIVFVETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKTGKSPIMIATD 418
Query: 901 VASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
VASRGLD+ ++ +VIN+DFP+ IE+YVHR+GRTG
Sbjct: 419 VASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTG 452
>UNIPROTKB|Q8IL13 [details] [associations]
symbol:PF14_0437 "Helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_001348611.2
ProteinModelPortal:Q8IL13 IntAct:Q8IL13 MINT:MINT-1661155
PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA GeneID:812019
KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
Identities = 177/423 (41%), Positives = 263/423 (62%)
Query: 24 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSF-KQAFQ 82
KN YKE +++ ++ ++V+ R K+ ++++ +G EN +P PV S K F
Sbjct: 74 KNFYKEHEDISKLSTKEVKEIRDKHK---ITIL--EG---EN----VPKPVVSINKIGFP 121
Query: 83 HYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQT 142
Y +++ L+N + P+PIQ Q WPI +SG DMIG A+TG+GKT AF+LPA +H Q
Sbjct: 122 DY--VIKSLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQP 179
Query: 143 TPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGGKEIEPQLEKIREGCH 201
+ GP VLV+APTRELA QI +E K + ++ C YGG Q+ +++G H
Sbjct: 180 N-LKYGDGPIVLVLAPTRELAEQIRQECIKFSTESKIRNTCAYGGVPKSGQIYALKQGVH 238
Query: 202 ILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTS 261
ILIA PGRL D + + +L V+++VLDEAD+MLD+GFE QI K I P+RQT+M S
Sbjct: 239 ILIACPGRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQIRPDRQTLMWS 298
Query: 262 ATWNKDVQRVAKKYMVN-PVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDE 320
ATW K+VQ +AK P++VNVGSL L A ++ Q+I +L+E EK L + +
Sbjct: 299 ATWPKEVQALAKDLCKEQPIQVNVGSLTLTACRSIKQEIYLLEEHEKIGNLKSLLQRIFK 358
Query: 321 ERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATD 380
+ D+++VF+ K + ++ L + ++GD QE+R L + +G + I +ATD
Sbjct: 359 DNDRIIVFVETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKTGKSPIMIATD 418
Query: 381 VASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPI 440
VASRGLD+ ++ +VIN+DFP+ IE+YVHR+GRTGRAG G S T +T + A +++ I
Sbjct: 419 VASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADKYRLAKDLVKI 478
Query: 441 LEE 443
L E
Sbjct: 479 LRE 481
Score = 774 (277.5 bits), Expect = 7.1e-77, P = 7.1e-77
Identities = 166/394 (42%), Positives = 247/394 (62%)
Query: 544 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSF-KQAFQ 602
KN YKE +++ ++ ++V+ R K+ ++++ +G EN +P PV S K F
Sbjct: 74 KNFYKEHEDISKLSTKEVKEIRDKHK---ITIL--EG---EN----VPKPVVSINKIGFP 121
Query: 603 HYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQT 662
Y +++ L+N + P+PIQ Q WPI +SG DMIG A+TG+GKT AF+LPA +H Q
Sbjct: 122 DY--VIKSLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQP 179
Query: 663 TPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGGKELEPQLEKIREGCH 721
+ GP VLV+APTRELA QI +E K + ++ C YGG Q+ +++G H
Sbjct: 180 N-LKYGDGPIVLVLAPTRELAEQIRQECIKFSTESKIRNTCAYGGVPKSGQIYALKQGVH 238
Query: 722 ILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTS 781
ILIA PGRL D + + +L V+++VLDEAD+MLD+GFE QI K I P+RQT+M S
Sbjct: 239 ILIACPGRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQIRPDRQTLMWS 298
Query: 782 ATWNKDVQRVAKKYMVN-PVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDE 840
ATW K+VQ +AK P++VNVGSL L A ++ Q+I +L+E EK L + +
Sbjct: 299 ATWPKEVQALAKDLCKEQPIQVNVGSLTLTACRSIKQEIYLLEEHEKIGNLKSLLQRIFK 358
Query: 841 ERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATD 900
+ D+++VF+ K + ++ L + ++GD QE+R L + +G + I +ATD
Sbjct: 359 DNDRIIVFVETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKTGKSPIMIATD 418
Query: 901 VASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
VASRGLD+ ++ +VIN+DFP+ IE+YVHR+GRTG
Sbjct: 419 VASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTG 452
>MGI|MGI:105037 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 5"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IDA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0030331 "estrogen
receptor binding" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=ISO]
[GO:0036002 "pre-mRNA binding" evidence=ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISO] [GO:0045069 "regulation of viral genome
replication" evidence=ISO] [GO:0045667 "regulation of osteoblast
differentiation" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0060765 "regulation of androgen receptor signaling pathway"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0072332 "intrinsic apoptotic signaling pathway by
p53 class mediator" evidence=ISO] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:105037
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0007623
GO:GO:0001701 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0030529 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
EMBL:AL603664 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014 OrthoDB:EOG4BVRTM
ChiTaRS:DDX5 EMBL:X65627 IPI:IPI00420363 PIR:I48385
UniGene:Mm.220038 ProteinModelPortal:Q61656 SMR:Q61656
DIP:DIP-32293N IntAct:Q61656 STRING:Q61656 PhosphoSite:Q61656
PaxDb:Q61656 PRIDE:Q61656 InParanoid:Q61656 CleanEx:MM_DDX5
Genevestigator:Q61656 GermOnline:ENSMUSG00000020719 Uniprot:Q61656
Length = 614
Score = 823 (294.8 bits), Expect = 4.5e-82, P = 4.5e-82
Identities = 171/437 (39%), Positives = 268/437 (61%)
Query: 13 RDKWARE--PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQI 70
+ KW + PK KN Y+E P++A T ++V+ +R+ +T G
Sbjct: 43 KKKWNLDELPKFEKNFYQEHPDLARRTAQEVDTYRRSKE------ITVRGH-------NC 89
Query: 71 PNPVTSFKQAFQHYP-EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 129
P PV +F +A ++P ++ + +FT P+ IQAQ WP+ +SG DM+G+AQTG+GKT +
Sbjct: 90 PKPVLNFYEA--NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 147
Query: 130 FLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGK 187
+LLPA++H + Q P ER GP LV+APTRELA Q+++ + LK+ C+YGG
Sbjct: 148 YLLPAIVHINHQ--PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGA 205
Query: 188 EIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT 247
PQ+ + G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFEPQI K
Sbjct: 206 PKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI 265
Query: 248 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEK 307
I P+RQT+M SATW K+V+++A+ ++ + + +N+G+L+L+A H + Q + + + EK
Sbjct: 266 VDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEK 325
Query: 308 KDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALE 366
+ L+ + M E+ +K +VF+ K ++ + + ++GD SQ++R+ L
Sbjct: 326 DEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLN 385
Query: 367 DITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLM 426
+ G A I +ATDVASRGLDV D+ VINYD+P+ E+Y+HR+GRT R+ K+G + T
Sbjct: 386 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFF 445
Query: 427 TRKDWSHAHEIIPILEE 443
T + ++I +L E
Sbjct: 446 TPNNIKQVSDLISVLRE 462
Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
Identities = 163/407 (40%), Positives = 253/407 (62%)
Query: 533 RDKWARE--PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQI 590
+ KW + PK KN Y+E P++A T ++V+ +R+ +T G
Sbjct: 43 KKKWNLDELPKFEKNFYQEHPDLARRTAQEVDTYRRSKE------ITVRGH-------NC 89
Query: 591 PNPVTSFKQAFQHYP-EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 649
P PV +F +A ++P ++ + +FT P+ IQAQ WP+ +SG DM+G+AQTG+GKT +
Sbjct: 90 PKPVLNFYEA--NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 147
Query: 650 FLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGK 707
+LLPA++H + Q P ER GP LV+APTRELA Q+++ + LK+ C+YGG
Sbjct: 148 YLLPAIVHINHQ--PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGA 205
Query: 708 ELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT 767
PQ+ + G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFEPQI K
Sbjct: 206 PKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI 265
Query: 768 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEK 827
I P+RQT+M SATW K+V+++A+ ++ + + +N+G+L+L+A H + Q + + + EK
Sbjct: 266 VDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEK 325
Query: 828 KDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALE 886
+ L+ + M E+ +K +VF+ K ++ + + ++GD SQ++R+ L
Sbjct: 326 DEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLN 385
Query: 887 DITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRT 933
+ G A I +ATDVASRGLDV D+ VINYD+P+ E+Y+HR+GRT
Sbjct: 386 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRT 432
>RGD|619906 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box helicase 5" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003712 "transcription cofactor
activity" evidence=ISO] [GO:0003713 "transcription coactivator
activity" evidence=IEA;ISO] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0007623 "circadian
rhythm" evidence=IEA;ISO] [GO:0019899 "enzyme binding"
evidence=IDA] [GO:0030331 "estrogen receptor binding"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=IEA;ISO] [GO:0036002
"pre-mRNA binding" evidence=IEA;ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA;ISO] [GO:0045069 "regulation of viral genome
replication" evidence=IMP] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=IDA] [GO:0050681 "androgen receptor binding"
evidence=IEA;ISO] [GO:0060765 "regulation of androgen receptor
signaling pathway" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072332 "intrinsic apoptotic
signaling pathway by p53 class mediator" evidence=IEA;ISO]
[GO:2001014 "regulation of skeletal muscle cell differentiation"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:619906 GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0019899 GO:GO:0000122 GO:GO:0003713 GO:GO:0005516
GO:GO:0048306 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
EMBL:CH473948 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 CTD:1655
EMBL:BC079036 IPI:IPI00464718 RefSeq:NP_001007614.1
UniGene:Rn.162208 IntAct:Q6AYI1 STRING:Q6AYI1
Ensembl:ENSRNOT00000048490 GeneID:287765 KEGG:rno:287765
UCSC:RGD:619906 InParanoid:Q6AYI1 NextBio:626970
Genevestigator:Q6AYI1 Uniprot:Q6AYI1
Length = 615
Score = 823 (294.8 bits), Expect = 4.5e-82, P = 4.5e-82
Identities = 171/437 (39%), Positives = 268/437 (61%)
Query: 13 RDKWARE--PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQI 70
+ KW + PK KN Y+E P++A T ++V+ +R+ +T G
Sbjct: 43 KKKWNLDELPKFEKNFYQEHPDLARRTAQEVDTYRRSKE------ITVRGH-------NC 89
Query: 71 PNPVTSFKQAFQHYP-EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 129
P PV +F +A ++P ++ + +FT P+ IQAQ WP+ +SG DM+G+AQTG+GKT +
Sbjct: 90 PKPVLNFYEA--NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 147
Query: 130 FLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGK 187
+LLPA++H + Q P ER GP LV+APTRELA Q+++ + LK+ C+YGG
Sbjct: 148 YLLPAIVHINHQ--PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGA 205
Query: 188 EIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT 247
PQ+ + G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFEPQI K
Sbjct: 206 PKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI 265
Query: 248 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEK 307
I P+RQT+M SATW K+V+++A+ ++ + + +N+G+L+L+A H + Q + + + EK
Sbjct: 266 VDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEK 325
Query: 308 KDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALE 366
+ L+ + M E+ +K +VF+ K ++ + + ++GD SQ++R+ L
Sbjct: 326 DEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLN 385
Query: 367 DITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLM 426
+ G A I +ATDVASRGLDV D+ VINYD+P+ E+Y+HR+GRT R+ K+G + T
Sbjct: 386 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFF 445
Query: 427 TRKDWSHAHEIIPILEE 443
T + ++I +L E
Sbjct: 446 TPNNIKQVSDLISVLRE 462
Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
Identities = 163/407 (40%), Positives = 253/407 (62%)
Query: 533 RDKWARE--PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQI 590
+ KW + PK KN Y+E P++A T ++V+ +R+ +T G
Sbjct: 43 KKKWNLDELPKFEKNFYQEHPDLARRTAQEVDTYRRSKE------ITVRGH-------NC 89
Query: 591 PNPVTSFKQAFQHYP-EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 649
P PV +F +A ++P ++ + +FT P+ IQAQ WP+ +SG DM+G+AQTG+GKT +
Sbjct: 90 PKPVLNFYEA--NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 147
Query: 650 FLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGK 707
+LLPA++H + Q P ER GP LV+APTRELA Q+++ + LK+ C+YGG
Sbjct: 148 YLLPAIVHINHQ--PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGA 205
Query: 708 ELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT 767
PQ+ + G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFEPQI K
Sbjct: 206 PKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI 265
Query: 768 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEK 827
I P+RQT+M SATW K+V+++A+ ++ + + +N+G+L+L+A H + Q + + + EK
Sbjct: 266 VDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEK 325
Query: 828 KDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALE 886
+ L+ + M E+ +K +VF+ K ++ + + ++GD SQ++R+ L
Sbjct: 326 DEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLN 385
Query: 887 DITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRT 933
+ G A I +ATDVASRGLDV D+ VINYD+P+ E+Y+HR+GRT
Sbjct: 386 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRT 432
>UNIPROTKB|Q4R6M5 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9541 "Macaca fascicularis" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014
HSSP:P10081 EMBL:AB169157 ProteinModelPortal:Q4R6M5 PRIDE:Q4R6M5
Uniprot:Q4R6M5
Length = 614
Score = 822 (294.4 bits), Expect = 5.8e-82, P = 5.8e-82
Identities = 172/437 (39%), Positives = 267/437 (61%)
Query: 13 RDKWARE--PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQI 70
+ KW + PK KN Y+E P++A T ++VE +R+ +T G
Sbjct: 43 KKKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKE------ITVRGH-------NC 89
Query: 71 PNPVTSFKQAFQHYP-EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 129
P PV +F +A ++P ++ + +FT P+ IQAQ WP+ +SG DM+G+AQTG+GKT +
Sbjct: 90 PKPVLNFYEA--NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 147
Query: 130 FLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGK 187
+LLPA++H + Q P ER GP LV+APTRELA Q+++ + LK+ C+YGG
Sbjct: 148 YLLPAIVHINHQ--PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGA 205
Query: 188 EIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT 247
PQ+ + G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFEPQI K
Sbjct: 206 PKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI 265
Query: 248 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEK 307
I P+RQT+M SATW K+V+++A+ ++ + + +N+G+L+L+A H + Q + + + EK
Sbjct: 266 VDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEK 325
Query: 308 KDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALE 366
+ L+ + M E+ +K +VF+ K ++ + + ++GD SQ++R L
Sbjct: 326 DEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERGWVLN 385
Query: 367 DITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLM 426
+ G A I +ATDVASRGLDV D+ VINYD+P+ E+Y+HR+GRT R+ K+G + T
Sbjct: 386 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFF 445
Query: 427 TRKDWSHAHEIIPILEE 443
T + ++I +L E
Sbjct: 446 TPNNIKQVSDLISVLRE 462
Score = 784 (281.0 bits), Expect = 6.2e-78, P = 6.2e-78
Identities = 164/407 (40%), Positives = 252/407 (61%)
Query: 533 RDKWARE--PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQI 590
+ KW + PK KN Y+E P++A T ++VE +R+ +T G
Sbjct: 43 KKKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKE------ITVRGH-------NC 89
Query: 591 PNPVTSFKQAFQHYP-EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 649
P PV +F +A ++P ++ + +FT P+ IQAQ WP+ +SG DM+G+AQTG+GKT +
Sbjct: 90 PKPVLNFYEA--NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 147
Query: 650 FLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGK 707
+LLPA++H + Q P ER GP LV+APTRELA Q+++ + LK+ C+YGG
Sbjct: 148 YLLPAIVHINHQ--PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGA 205
Query: 708 ELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT 767
PQ+ + G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFEPQI K
Sbjct: 206 PKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI 265
Query: 768 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEK 827
I P+RQT+M SATW K+V+++A+ ++ + + +N+G+L+L+A H + Q + + + EK
Sbjct: 266 VDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEK 325
Query: 828 KDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALE 886
+ L+ + M E+ +K +VF+ K ++ + + ++GD SQ++R L
Sbjct: 326 DEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERGWVLN 385
Query: 887 DITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRT 933
+ G A I +ATDVASRGLDV D+ VINYD+P+ E+Y+HR+GRT
Sbjct: 386 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRT 432
>RGD|708480 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:708480
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0003723 GO:GO:0015030
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 KO:K12811 CTD:9879
HOGENOM:HOG000007229 HOVERGEN:HBG081426 OrthoDB:EOG441Q9T
EMBL:U25746 EMBL:BC107590 IPI:IPI00208266 PIR:A57514
RefSeq:NP_620798.1 UniGene:Rn.3436 ProteinModelPortal:Q62780
STRING:Q62780 PhosphoSite:Q62780 PRIDE:Q62780
Ensembl:ENSRNOT00000029885 GeneID:245957 KEGG:rno:245957
UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 757 (271.5 bits), Expect = 7.3e-82, Sum P(3) = 7.3e-82
Identities = 169/426 (39%), Positives = 252/426 (59%)
Query: 24 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQH 83
KN Y E PE+A M+ E+V FR + I+V G+ P P+ S+ Q
Sbjct: 333 KNFYVEVPELAKMSQEEVNVFRLEMEGITVK-----GK-------GCPKPIKSWVQCGIS 380
Query: 84 YPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTT 143
+IL L+ + P+PIQ QA P +MSG D+IGIA+TG+GKT AFLLP H Q +
Sbjct: 381 M-KILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS 439
Query: 144 PISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEIEPQLEKIREGCHI 202
+ E GP ++M PTRELA QI +E K GL+ VCVYGG I Q+ +++ G I
Sbjct: 440 -LEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEI 498
Query: 203 LIATPGRLNDFVSRAS---IDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVM 259
++ TPGR+ D ++ S +L+ V++VVLDEADRM D+GFEPQ+ + + P+RQTVM
Sbjct: 499 IVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVM 558
Query: 260 TSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMD 319
SAT+ + ++ +A++ + P++V VG + + V Q++I+++E++K L+E +
Sbjct: 559 FSATFPRAMEALARRILSKPIEVQVGGRSVVCSD-VEQQVIVIEEEKKFLKLLELLGHY- 616
Query: 320 EERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVAT 379
+E V++F+ ++ + DL SL+G + Q DR+ + D +G ++ VAT
Sbjct: 617 QESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVAT 676
Query: 380 DVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIP 439
VA+RGLDV L V+NY P+H E+YVHR GRTGRAG G + T +T +A +II
Sbjct: 677 SVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIK 736
Query: 440 ILEEGG 445
LE G
Sbjct: 737 ALELSG 742
Score = 706 (253.6 bits), Expect = 3.6e-75, Sum P(3) = 3.6e-75
Identities = 156/395 (39%), Positives = 236/395 (59%)
Query: 544 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQH 603
KN Y E PE+A M+ E+V FR + I+V G+ P P+ S+ Q
Sbjct: 333 KNFYVEVPELAKMSQEEVNVFRLEMEGITVK-----GK-------GCPKPIKSWVQCGIS 380
Query: 604 YPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTT 663
+IL L+ + P+PIQ QA P +MSG D+IGIA+TG+GKT AFLLP H Q +
Sbjct: 381 M-KILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS 439
Query: 664 PISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKELEPQLEKIREGCHI 722
+ E GP ++M PTRELA QI +E K GL+ VCVYGG + Q+ +++ G I
Sbjct: 440 -LEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEI 498
Query: 723 LIATPGRLNDFVSRAS---IDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVM 779
++ TPGR+ D ++ S +L+ V++VVLDEADRM D+GFEPQ+ + + P+RQTVM
Sbjct: 499 IVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVM 558
Query: 780 TSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMD 839
SAT+ + ++ +A++ + P++V VG + + V Q++I+++E++K L+E +
Sbjct: 559 FSATFPRAMEALARRILSKPIEVQVGGRSVVCSD-VEQQVIVIEEEKKFLKLLELLGHY- 616
Query: 840 EERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVAT 899
+E V++F+ ++ + DL SL+G + Q DR+ + D +G ++ VAT
Sbjct: 617 QESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVAT 676
Query: 900 DVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
VA+RGLDV L V+NY P+H E+YVHR GRTG
Sbjct: 677 SVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTG 711
Score = 54 (24.1 bits), Expect = 7.3e-82, Sum P(3) = 7.3e-82
Identities = 44/199 (22%), Positives = 80/199 (40%)
Query: 505 MINKIDLGRHIDPEPTMEELMALSDRKERDKWAREPKIIKNV--YKEDPEVANMTPEQVE 562
+I ++L P P +E+L SD K++ K E KIIK + + T + +
Sbjct: 734 IIKALELSGTAVP-PDLEKLW--SDFKDQQK--AEGKIIKKSSGFSGKGFKFDETEQALA 788
Query: 563 AFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPI 622
RKK ++ + SD DE+ I + S F + + + P+P
Sbjct: 789 NERKKLQKAALGLQDSD---DEDAAVDIDEQIESM---FNSKKRVKDMAAPGTSSAPAPT 842
Query: 623 QAQAWPILMSGHDMIGI-AQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRE 681
A + ++ + I AQ G + + + Q T R GP + +
Sbjct: 843 AGNAEKLEIAKRLALRINAQKNLG------IESQVDVMQQATNAILRGGPLLAPTVSAKT 896
Query: 682 LATQIEREVN-KIDYKGLK 699
+A Q+ ++N K++Y L+
Sbjct: 897 IAEQLAEKINAKLNYVPLE 915
Score = 51 (23.0 bits), Expect = 3.6e-75, Sum P(3) = 3.6e-75
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 266 KDVQRVAKKYMVNPVKVNVGSLDLAA-THT-----VTQKIIILDEDEKKDWLME 313
++V+ KK+ + VK G+ + T T VT K ++D D+KK LME
Sbjct: 233 EEVKEEVKKFNMRSVKGGAGNEKKSGPTVTKVVTVVTTKKAVVDADKKKGELME 286
Score = 42 (19.8 bits), Expect = 7.3e-82, Sum P(3) = 7.3e-82
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 1 MEELMALSDRKER-DKWAREP--KIIKNVYKEDPEVANM 36
+EE M RKER +KW E K ++N+ + E+ M
Sbjct: 156 LEEEMR--KRKERVEKWREEQRKKAMENIGELKKEIEEM 192
Score = 42 (19.8 bits), Expect = 1.8e-71, Sum P(2) = 1.8e-71
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 521 MEELMALSDRKER-DKWAREP--KIIKNVYKEDPEVANM 556
+EE M RKER +KW E K ++N+ + E+ M
Sbjct: 156 LEEEMR--KRKERVEKWREEQRKKAMENIGELKKEIEEM 192
>UNIPROTKB|Q62780 [details] [associations]
symbol:Ddx46 "Probable ATP-dependent RNA helicase DDX46"
species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:708480 GO:GO:0005524
GO:GO:0005634 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T EMBL:U25746 EMBL:BC107590 IPI:IPI00208266
PIR:A57514 RefSeq:NP_620798.1 UniGene:Rn.3436
ProteinModelPortal:Q62780 STRING:Q62780 PhosphoSite:Q62780
PRIDE:Q62780 Ensembl:ENSRNOT00000029885 GeneID:245957
KEGG:rno:245957 UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 757 (271.5 bits), Expect = 7.3e-82, Sum P(3) = 7.3e-82
Identities = 169/426 (39%), Positives = 252/426 (59%)
Query: 24 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQH 83
KN Y E PE+A M+ E+V FR + I+V G+ P P+ S+ Q
Sbjct: 333 KNFYVEVPELAKMSQEEVNVFRLEMEGITVK-----GK-------GCPKPIKSWVQCGIS 380
Query: 84 YPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTT 143
+IL L+ + P+PIQ QA P +MSG D+IGIA+TG+GKT AFLLP H Q +
Sbjct: 381 M-KILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS 439
Query: 144 PISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEIEPQLEKIREGCHI 202
+ E GP ++M PTRELA QI +E K GL+ VCVYGG I Q+ +++ G I
Sbjct: 440 -LEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEI 498
Query: 203 LIATPGRLNDFVSRAS---IDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVM 259
++ TPGR+ D ++ S +L+ V++VVLDEADRM D+GFEPQ+ + + P+RQTVM
Sbjct: 499 IVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVM 558
Query: 260 TSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMD 319
SAT+ + ++ +A++ + P++V VG + + V Q++I+++E++K L+E +
Sbjct: 559 FSATFPRAMEALARRILSKPIEVQVGGRSVVCSD-VEQQVIVIEEEKKFLKLLELLGHY- 616
Query: 320 EERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVAT 379
+E V++F+ ++ + DL SL+G + Q DR+ + D +G ++ VAT
Sbjct: 617 QESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVAT 676
Query: 380 DVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIP 439
VA+RGLDV L V+NY P+H E+YVHR GRTGRAG G + T +T +A +II
Sbjct: 677 SVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIK 736
Query: 440 ILEEGG 445
LE G
Sbjct: 737 ALELSG 742
Score = 706 (253.6 bits), Expect = 3.6e-75, Sum P(3) = 3.6e-75
Identities = 156/395 (39%), Positives = 236/395 (59%)
Query: 544 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQH 603
KN Y E PE+A M+ E+V FR + I+V G+ P P+ S+ Q
Sbjct: 333 KNFYVEVPELAKMSQEEVNVFRLEMEGITVK-----GK-------GCPKPIKSWVQCGIS 380
Query: 604 YPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTT 663
+IL L+ + P+PIQ QA P +MSG D+IGIA+TG+GKT AFLLP H Q +
Sbjct: 381 M-KILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS 439
Query: 664 PISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKELEPQLEKIREGCHI 722
+ E GP ++M PTRELA QI +E K GL+ VCVYGG + Q+ +++ G I
Sbjct: 440 -LEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEI 498
Query: 723 LIATPGRLNDFVSRAS---IDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVM 779
++ TPGR+ D ++ S +L+ V++VVLDEADRM D+GFEPQ+ + + P+RQTVM
Sbjct: 499 IVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVM 558
Query: 780 TSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMD 839
SAT+ + ++ +A++ + P++V VG + + V Q++I+++E++K L+E +
Sbjct: 559 FSATFPRAMEALARRILSKPIEVQVGGRSVVCSD-VEQQVIVIEEEKKFLKLLELLGHY- 616
Query: 840 EERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVAT 899
+E V++F+ ++ + DL SL+G + Q DR+ + D +G ++ VAT
Sbjct: 617 QESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVAT 676
Query: 900 DVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
VA+RGLDV L V+NY P+H E+YVHR GRTG
Sbjct: 677 SVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTG 711
Score = 54 (24.1 bits), Expect = 7.3e-82, Sum P(3) = 7.3e-82
Identities = 44/199 (22%), Positives = 80/199 (40%)
Query: 505 MINKIDLGRHIDPEPTMEELMALSDRKERDKWAREPKIIKNV--YKEDPEVANMTPEQVE 562
+I ++L P P +E+L SD K++ K E KIIK + + T + +
Sbjct: 734 IIKALELSGTAVP-PDLEKLW--SDFKDQQK--AEGKIIKKSSGFSGKGFKFDETEQALA 788
Query: 563 AFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPI 622
RKK ++ + SD DE+ I + S F + + + P+P
Sbjct: 789 NERKKLQKAALGLQDSD---DEDAAVDIDEQIESM---FNSKKRVKDMAAPGTSSAPAPT 842
Query: 623 QAQAWPILMSGHDMIGI-AQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRE 681
A + ++ + I AQ G + + + Q T R GP + +
Sbjct: 843 AGNAEKLEIAKRLALRINAQKNLG------IESQVDVMQQATNAILRGGPLLAPTVSAKT 896
Query: 682 LATQIEREVN-KIDYKGLK 699
+A Q+ ++N K++Y L+
Sbjct: 897 IAEQLAEKINAKLNYVPLE 915
Score = 51 (23.0 bits), Expect = 3.6e-75, Sum P(3) = 3.6e-75
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 266 KDVQRVAKKYMVNPVKVNVGSLDLAA-THT-----VTQKIIILDEDEKKDWLME 313
++V+ KK+ + VK G+ + T T VT K ++D D+KK LME
Sbjct: 233 EEVKEEVKKFNMRSVKGGAGNEKKSGPTVTKVVTVVTTKKAVVDADKKKGELME 286
Score = 42 (19.8 bits), Expect = 7.3e-82, Sum P(3) = 7.3e-82
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 1 MEELMALSDRKER-DKWAREP--KIIKNVYKEDPEVANM 36
+EE M RKER +KW E K ++N+ + E+ M
Sbjct: 156 LEEEMR--KRKERVEKWREEQRKKAMENIGELKKEIEEM 192
Score = 42 (19.8 bits), Expect = 1.8e-71, Sum P(2) = 1.8e-71
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 521 MEELMALSDRKER-DKWAREP--KIIKNVYKEDPEVANM 556
+EE M RKER +KW E K ++N+ + E+ M
Sbjct: 156 LEEEMR--KRKERVEKWREEQRKKAMENIGELKKEIEEM 192
>UNIPROTKB|A5A6J2 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9598 "Pan troglodytes" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 HOVERGEN:HBG015893 GO:GO:2001014
CTD:1655 OrthoDB:EOG4BVRTM EMBL:AB222120 RefSeq:NP_001138306.1
UniGene:Ptr.274 ProteinModelPortal:A5A6J2 PRIDE:A5A6J2
GeneID:455267 KEGG:ptr:455267 InParanoid:A5A6J2 NextBio:20836697
Uniprot:A5A6J2
Length = 614
Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
Identities = 171/437 (39%), Positives = 267/437 (61%)
Query: 13 RDKWARE--PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQI 70
+ KW + PK KN Y+E P++A T ++VE +R+ +T G
Sbjct: 43 KKKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKE------ITVRGH-------NC 89
Query: 71 PNPVTSFKQAFQHYP-EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 129
P PV +F +A ++P ++ + +FT P+ IQAQ WP+ +SG DM+G+AQTG+GKT +
Sbjct: 90 PKPVLNFYEA--NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 147
Query: 130 FLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGK 187
+LLPA++H + Q P ER GP LV+APTRELA Q+++ + LK+ C+YGG
Sbjct: 148 YLLPAIVHINHQ--PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGA 205
Query: 188 EIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT 247
PQ+ + G IATPGRL DF+ +L+ +++VLDEADRMLD+GFEPQI K
Sbjct: 206 PKGPQIRDLERGVENCIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI 265
Query: 248 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEK 307
I P+RQT+M SATW K+V+++A+ ++ + + +N+G+L+L+A H + Q + + + EK
Sbjct: 266 VDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEK 325
Query: 308 KDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALE 366
+ L+ + M E+ +K +VF+ K ++ + + ++GD SQ++R+ L
Sbjct: 326 DEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLN 385
Query: 367 DITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLM 426
+ G A I +ATDVASRGLDV D+ VINYD+P+ E+Y+HR+GRT R+ K+G + T
Sbjct: 386 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFF 445
Query: 427 TRKDWSHAHEIIPILEE 443
T + ++I +L E
Sbjct: 446 TPNNIKQVSDLISVLRE 462
Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
Identities = 163/407 (40%), Positives = 252/407 (61%)
Query: 533 RDKWARE--PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQI 590
+ KW + PK KN Y+E P++A T ++VE +R+ +T G
Sbjct: 43 KKKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKE------ITVRGH-------NC 89
Query: 591 PNPVTSFKQAFQHYP-EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 649
P PV +F +A ++P ++ + +FT P+ IQAQ WP+ +SG DM+G+AQTG+GKT +
Sbjct: 90 PKPVLNFYEA--NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 147
Query: 650 FLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGK 707
+LLPA++H + Q P ER GP LV+APTRELA Q+++ + LK+ C+YGG
Sbjct: 148 YLLPAIVHINHQ--PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGA 205
Query: 708 ELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT 767
PQ+ + G IATPGRL DF+ +L+ +++VLDEADRMLD+GFEPQI K
Sbjct: 206 PKGPQIRDLERGVENCIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI 265
Query: 768 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEK 827
I P+RQT+M SATW K+V+++A+ ++ + + +N+G+L+L+A H + Q + + + EK
Sbjct: 266 VDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEK 325
Query: 828 KDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALE 886
+ L+ + M E+ +K +VF+ K ++ + + ++GD SQ++R+ L
Sbjct: 326 DEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLN 385
Query: 887 DITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRT 933
+ G A I +ATDVASRGLDV D+ VINYD+P+ E+Y+HR+GRT
Sbjct: 386 EFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRT 432
>TAIR|locus:2081061 [details] [associations]
symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
"vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
Uniprot:Q9SQV1
Length = 1088
Score = 818 (293.0 bits), Expect = 1.5e-81, P = 1.5e-81
Identities = 174/404 (43%), Positives = 256/404 (63%)
Query: 41 VEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPS 100
VE +RK++ VT+ G EN IP P +F+ + PEILR+L + F +P+
Sbjct: 414 VEIYRKQHE------VTTTG---EN----IPAPYITFESSGLP-PEILRELLSAGFPSPT 459
Query: 101 PIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTR 160
PIQAQ WPI + D++ IA+TG+GKT +L+PA I L+ R GP+VL++APTR
Sbjct: 460 PIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFIL--LRHCRNDSRNGPTVLILAPTR 517
Query: 161 ELATQIEREVNKIDYKG-LKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASI 219
ELATQI+ E + + C+YGG PQL+++ G I++ATPGRLND + I
Sbjct: 518 ELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDILEMKMI 577
Query: 220 DLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNP 279
D + VS +VLDEADRMLD+GFEPQI K I P RQT+M +ATW K+V+++A +VNP
Sbjct: 578 DFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNP 637
Query: 280 VKVNVGSLD-LAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAM 338
V+VN+G +D LAA +TQ + ++ + EK+ L + + E KV++F K +
Sbjct: 638 VQVNIGRVDELAANKAITQYVEVVPQMEKERRLEQILRSQ-ERGSKVIIFCSTKRLCDHL 696
Query: 339 SSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYD 398
+ + + + ++GD +Q +R+ L SG + + +ATDVA+RGLD+ D+ VINYD
Sbjct: 697 ARSVGRHFG-AVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYD 755
Query: 399 FPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILE 442
FP+ +E+YVHR+GRTGRAG +G + T T +DW +A ++I +LE
Sbjct: 756 FPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWKYAPDLIKVLE 799
Score = 748 (268.4 bits), Expect = 8.9e-74, P = 8.9e-74
Identities = 162/376 (43%), Positives = 237/376 (63%)
Query: 561 VEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPS 620
VE +RK++ VT+ G EN IP P +F+ + PEILR+L + F +P+
Sbjct: 414 VEIYRKQHE------VTTTG---EN----IPAPYITFESSGLP-PEILRELLSAGFPSPT 459
Query: 621 PIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTR 680
PIQAQ WPI + D++ IA+TG+GKT +L+PA I L+ R GP+VL++APTR
Sbjct: 460 PIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFIL--LRHCRNDSRNGPTVLILAPTR 517
Query: 681 ELATQIEREVNKIDYKG-LKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASI 739
ELATQI+ E + + C+YGG PQL+++ G I++ATPGRLND + I
Sbjct: 518 ELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDILEMKMI 577
Query: 740 DLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNP 799
D + VS +VLDEADRMLD+GFEPQI K I P RQT+M +ATW K+V+++A +VNP
Sbjct: 578 DFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNP 637
Query: 800 VKVNVGSLD-LAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAM 858
V+VN+G +D LAA +TQ + ++ + EK+ L + + E KV++F K +
Sbjct: 638 VQVNIGRVDELAANKAITQYVEVVPQMEKERRLEQILRSQ-ERGSKVIIFCSTKRLCDHL 696
Query: 859 SSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYD 918
+ + + + ++GD +Q +R+ L SG + + +ATDVA+RGLD+ D+ VINYD
Sbjct: 697 ARSVGRHFG-AVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYD 755
Query: 919 FPSHIEEYVHRVGRTG 934
FP+ +E+YVHR+GRTG
Sbjct: 756 FPTGVEDYVHRIGRTG 771
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 811 (290.5 bits), Expect = 8.5e-81, P = 8.5e-81
Identities = 174/443 (39%), Positives = 266/443 (60%)
Query: 13 RDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPN 72
+ KW +K+ Y P + +QV R++ +I+VS G ++P+
Sbjct: 188 KPKWENLEPFLKDFYNIHPNTLAKSEQQVAEIRREL-EITVS-----GN-------ELPH 234
Query: 73 PVTSFKQAFQHYP-EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFL 131
PV SF+++ P ++ +++ FT P+ IQ+Q WPI +SG D++GIAQTG+GKT A++
Sbjct: 235 PVVSFEES--SLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYM 292
Query: 132 LPALIHTHLQTTPISERAGPSVLVMAPTRELATQIE---REVNKIDYKGLKAVCVYGGKE 188
LPA++H Q PI GP LV+APTRELA QI+ R+ + ++ C++GG
Sbjct: 293 LPAIVHIGNQP-PIIRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSS 351
Query: 189 IEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTS 248
PQ + G ++IATPGRL DF+ + +L+ +++VLDEADRMLD+GFEPQI K
Sbjct: 352 KVPQARDLDRGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKII 411
Query: 249 IYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKK 308
I P+RQ VM SATW K+VQ +A ++ + +++N+GS++L+A H + Q + I E EK
Sbjct: 412 EQIRPDRQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEIEKP 471
Query: 309 DWLMEFFD------NMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDRE 362
L+ + N +K++VF+ K V + + + + S++GD +Q +R+
Sbjct: 472 QRLVCLLNEISPIKNSGNNGNKIIVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNERD 531
Query: 363 IALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGES 422
L+D +G + I +ATDVASRGLDV DL +VINYD+P+ E YVHR+GRTGR + G +
Sbjct: 532 SVLKDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTA 591
Query: 423 ITLMTRKDWSHAHEIIPILEEGG 445
T T + A E+I +LEE G
Sbjct: 592 YTFFTPDNAKQARELISVLEEAG 614
Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
Identities = 163/412 (39%), Positives = 250/412 (60%)
Query: 533 RDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPN 592
+ KW +K+ Y P + +QV R++ +I+VS G ++P+
Sbjct: 188 KPKWENLEPFLKDFYNIHPNTLAKSEQQVAEIRREL-EITVS-----GN-------ELPH 234
Query: 593 PVTSFKQAFQHYP-EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFL 651
PV SF+++ P ++ +++ FT P+ IQ+Q WPI +SG D++GIAQTG+GKT A++
Sbjct: 235 PVVSFEES--SLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYM 292
Query: 652 LPALIHTHLQTTPISERAGPSVLVMAPTRELATQIE---REVNKIDYKGLKAVCVYGGKE 708
LPA++H Q PI GP LV+APTRELA QI+ R+ + ++ C++GG
Sbjct: 293 LPAIVHIGNQP-PIIRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSS 351
Query: 709 LEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTS 768
PQ + G ++IATPGRL DF+ + +L+ +++VLDEADRMLD+GFEPQI K
Sbjct: 352 KVPQARDLDRGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKII 411
Query: 769 IYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKK 828
I P+RQ VM SATW K+VQ +A ++ + +++N+GS++L+A H + Q + I E EK
Sbjct: 412 EQIRPDRQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEIEKP 471
Query: 829 DWLMEFFD------NMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDRE 882
L+ + N +K++VF+ K V + + + + S++GD +Q +R+
Sbjct: 472 QRLVCLLNEISPIKNSGNNGNKIIVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNERD 531
Query: 883 IALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
L+D +G + I +ATDVASRGLDV DL +VINYD+P+ E YVHR+GRTG
Sbjct: 532 SVLKDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTG 583
>UNIPROTKB|E1BSC0 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AADN02028359
IPI:IPI00577115 Ensembl:ENSGALT00000010339 Uniprot:E1BSC0
Length = 1031
Score = 749 (268.7 bits), Expect = 1.9e-79, Sum P(3) = 1.9e-79
Identities = 165/427 (38%), Positives = 252/427 (59%)
Query: 24 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQH 83
KN Y E PE+A MT E+V +R + I+V G+ P P+ ++ Q
Sbjct: 332 KNFYVEVPELAKMTQEEVNVYRLEMEGITVK-----GK-------GCPKPIKTWVQCGIS 379
Query: 84 YPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTT 143
+IL L+ + P+PIQ+QA P +M+G D+IGIA+TG+GKT AFLLP H +
Sbjct: 380 M-KILTALKKHGYEKPTPIQSQAIPAIMNGRDLIGIAKTGSGKTIAFLLPMFRHI-MDQR 437
Query: 144 PISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEIEPQLEKIREGCHI 202
+ E GP ++M PTRELA QI +E K GL+ VCVYGG I Q+ +++ G I
Sbjct: 438 ALEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEI 497
Query: 203 LIATPGRLNDFVSRAS---IDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVM 259
++ TPGR+ D ++ + +L+ V++VVLDEADRM D+GFEPQ+ + + P+RQTVM
Sbjct: 498 IVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVM 557
Query: 260 TSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMD 319
SAT+ + ++ +A++ + P++V VG + + V Q +I+++E+ K L+E +
Sbjct: 558 FSATFPRAMEALARRILSKPIEVQVGGRSVVCSD-VEQHVIVIEEENKFLKLLELLGHY- 615
Query: 320 EERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVAT 379
+E+ V++F+ ++ + DL SL+G + Q DR+ + D +G ++ VAT
Sbjct: 616 QEKGSVIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKNGTCKLLVAT 675
Query: 380 DVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIP 439
VA+RGLDV L V+NY P+H E+YVHR GRTGRAG G + T +T +A +II
Sbjct: 676 SVAARGLDVKQLMLVVNYSCPNHYEDYVHRAGRTGRAGNKGFAYTFITEDQARYAGDIIK 735
Query: 440 ILEEGGH 446
LE G+
Sbjct: 736 ALELSGN 742
Score = 698 (250.8 bits), Expect = 1.6e-73, Sum P(3) = 1.6e-73
Identities = 152/395 (38%), Positives = 235/395 (59%)
Query: 544 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQH 603
KN Y E PE+A MT E+V +R + I+V G+ P P+ ++ Q
Sbjct: 332 KNFYVEVPELAKMTQEEVNVYRLEMEGITVK-----GK-------GCPKPIKTWVQCGIS 379
Query: 604 YPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTT 663
+IL L+ + P+PIQ+QA P +M+G D+IGIA+TG+GKT AFLLP H +
Sbjct: 380 M-KILTALKKHGYEKPTPIQSQAIPAIMNGRDLIGIAKTGSGKTIAFLLPMFRHI-MDQR 437
Query: 664 PISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKELEPQLEKIREGCHI 722
+ E GP ++M PTRELA QI +E K GL+ VCVYGG + Q+ +++ G I
Sbjct: 438 ALEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEI 497
Query: 723 LIATPGRLNDFVSRAS---IDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVM 779
++ TPGR+ D ++ + +L+ V++VVLDEADRM D+GFEPQ+ + + P+RQTVM
Sbjct: 498 IVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVM 557
Query: 780 TSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMD 839
SAT+ + ++ +A++ + P++V VG + + V Q +I+++E+ K L+E +
Sbjct: 558 FSATFPRAMEALARRILSKPIEVQVGGRSVVCSD-VEQHVIVIEEENKFLKLLELLGHY- 615
Query: 840 EERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVAT 899
+E+ V++F+ ++ + DL SL+G + Q DR+ + D +G ++ VAT
Sbjct: 616 QEKGSVIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKNGTCKLLVAT 675
Query: 900 DVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
VA+RGLDV L V+NY P+H E+YVHR GRTG
Sbjct: 676 SVAARGLDVKQLMLVVNYSCPNHYEDYVHRAGRTG 710
Score = 44 (20.5 bits), Expect = 1.9e-79, Sum P(3) = 1.9e-79
Identities = 19/68 (27%), Positives = 36/68 (52%)
Query: 1 MEELMALSDRKER-DKWAREP--KIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVT 57
+EE M RKER +KW E K ++N+ + E+ M +Q + + +++D T
Sbjct: 155 LEEEMR--KRKERVEKWREEQRKKAMENIGELKKEIEEM--KQGKKWSLEDDDDD-DEET 209
Query: 58 SDGQIDEN 65
++G+ + N
Sbjct: 210 AEGEKEGN 217
Score = 43 (20.2 bits), Expect = 1.6e-73, Sum P(3) = 1.6e-73
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 266 KDVQRVAKKYMVNPVKVNVGSLDLAA-THT-----VTQKIIILDEDEKKDWLME 313
++V+ KK+ + VK GS + T T VT K +++ ++KK LME
Sbjct: 232 EEVKEEVKKFNMRSVKGGGGSEKKSGPTVTKVVTVVTTKKAVVETEKKKGELME 285
Score = 37 (18.1 bits), Expect = 1.9e-79, Sum P(3) = 1.9e-79
Identities = 15/57 (26%), Positives = 24/57 (42%)
Query: 612 ENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISER 668
+NL + QA ++ G + A T + KT A L I+ L PI ++
Sbjct: 862 KNLGAEAQVDVMQQATNAILRGGTIQ--APTVSAKTIAEQLAEKINAKLNYVPIEKQ 916
Score = 37 (18.1 bits), Expect = 1.0e-78, Sum P(3) = 1.0e-78
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 8 SDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNND 50
S + R + +R P KN E+ + E VE ++K +
Sbjct: 93 SRSRSRGRRSRSPSPSKNRKTENRSRSKERTEGVEVSKEKKKE 135
>WB|WBGene00010260 [details] [associations]
symbol:F58E10.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:Z81555 PIR:T22917
RefSeq:NP_001041134.1 ProteinModelPortal:Q9XUW5 SMR:Q9XUW5
STRING:Q9XUW5 PaxDb:Q9XUW5 PRIDE:Q9XUW5 EnsemblMetazoa:F58E10.3a.1
EnsemblMetazoa:F58E10.3a.2 EnsemblMetazoa:F58E10.3a.3
EnsemblMetazoa:F58E10.3a.4 EnsemblMetazoa:F58E10.3a.5 GeneID:179897
KEGG:cel:CELE_F58E10.3 UCSC:F58E10.3a.1 CTD:179897
WormBase:F58E10.3a InParanoid:Q9XUW5 OMA:YVLQEIT NextBio:907314
ArrayExpress:Q9XUW5 Uniprot:Q9XUW5
Length = 561
Score = 791 (283.5 bits), Expect = 1.1e-78, P = 1.1e-78
Identities = 177/438 (40%), Positives = 268/438 (61%)
Query: 13 RD-KWARE--PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQ 69
RD W+ E I K+ Y E+ V+ +++ + +S + VT +G+
Sbjct: 78 RDVDWSAENLTPIEKDFYHENAAVSRREQYEIDQW------VSANQVTLEGR-------G 124
Query: 70 IPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 129
+P PV F +A P + +L F P+ IQ+ +WPI MSG D+I IA+TG+GKT A
Sbjct: 125 VPRPVFEFNEA--PLPGQIHELLYGKFQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLA 182
Query: 130 FLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDY---KGLKAVCVYGG 186
F+LPAL+H Q GP+VLV+ PTRELA Q++ EV+ ID+ GLK C++GG
Sbjct: 183 FMLPALVHITKQAHR-QRGEGPAVLVLLPTRELAQQVQ-EVS-IDFCHSLGLKMTCLFGG 239
Query: 187 KEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINK 246
PQ + G I++ATPGRL DF+ + ++K S++VLDEADRMLD+GFEPQI K
Sbjct: 240 ASKGPQARDLERGVDIVVATPGRLLDFLDNGTTNMKKCSYLVLDEADRMLDMGFEPQIKK 299
Query: 247 TSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDE 306
I P+RQT+M SATW K+V+ +A + + +NVGSL+LAA H +TQ + IL+E
Sbjct: 300 IIGQIRPDRQTLMFSATWPKEVRALASDFQKDAAFLNVGSLELAANHNITQVVDILEEHA 359
Query: 307 KKDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIAL 365
K+ LME ++ M+++ K ++F+ K ++ + + ++GD +Q +R+ L
Sbjct: 360 KQAKLMELLNHIMNQKECKTIIFVETKRKADELTRAMRRDGWPTLCIHGDKNQGERDWVL 419
Query: 366 EDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITL 425
++ +G I +ATDVA+RGLDV D+ VINYD+P++ E+YVHR+GRTGR+ K G + T
Sbjct: 420 QEFKAGKTPIMLATDVAARGLDVDDIKFVINYDYPNNSEDYVHRIGRTGRSDKKGTAYTF 479
Query: 426 MTRKDWSHAHEIIPILEE 443
T + S A +++ +L+E
Sbjct: 480 FTHTNASKAKDLLKVLDE 497
Score = 745 (267.3 bits), Expect = 4.6e-78, Sum P(2) = 4.6e-78
Identities = 168/409 (41%), Positives = 251/409 (61%)
Query: 533 RD-KWARE--PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQ 589
RD W+ E I K+ Y E+ V+ +++ + +S + VT +G+
Sbjct: 78 RDVDWSAENLTPIEKDFYHENAAVSRREQYEIDQW------VSANQVTLEGR-------G 124
Query: 590 IPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 649
+P PV F +A P + +L F P+ IQ+ +WPI MSG D+I IA+TG+GKT A
Sbjct: 125 VPRPVFEFNEA--PLPGQIHELLYGKFQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLA 182
Query: 650 FLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDY---KGLKAVCVYGG 706
F+LPAL+H Q GP+VLV+ PTRELA Q++ EV+ ID+ GLK C++GG
Sbjct: 183 FMLPALVHITKQAHR-QRGEGPAVLVLLPTRELAQQVQ-EVS-IDFCHSLGLKMTCLFGG 239
Query: 707 KELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINK 766
PQ + G I++ATPGRL DF+ + ++K S++VLDEADRMLD+GFEPQI K
Sbjct: 240 ASKGPQARDLERGVDIVVATPGRLLDFLDNGTTNMKKCSYLVLDEADRMLDMGFEPQIKK 299
Query: 767 TSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDE 826
I P+RQT+M SATW K+V+ +A + + +NVGSL+LAA H +TQ + IL+E
Sbjct: 300 IIGQIRPDRQTLMFSATWPKEVRALASDFQKDAAFLNVGSLELAANHNITQVVDILEEHA 359
Query: 827 KKDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIAL 885
K+ LME ++ M+++ K ++F+ K ++ + + ++GD +Q +R+ L
Sbjct: 360 KQAKLMELLNHIMNQKECKTIIFVETKRKADELTRAMRRDGWPTLCIHGDKNQGERDWVL 419
Query: 886 EDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
++ +G I +ATDVA+RGLDV D+ VINYD+P++ E+YVHR+GRTG
Sbjct: 420 QEFKAGKTPIMLATDVAARGLDVDDIKFVINYDYPNNSEDYVHRIGRTG 468
Score = 59 (25.8 bits), Expect = 4.6e-78, Sum P(2) = 4.6e-78
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 414 GRAGKSGESITLMTRKDWSHAHEIIPILEEGGHESYMIWRRD 455
GR G +G + + DWS A + PI ++ HE+ + RR+
Sbjct: 65 GRGGSNGSAGGRLRDVDWS-AENLTPIEKDFYHENAAVSRRE 105
>TAIR|locus:2222617 [details] [associations]
symbol:AT5G14610 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009664
"plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
wall modification" evidence=RCA] InterPro:IPR000629
InterPro:IPR001202 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00397 PROSITE:PS00039
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194 SMART:SM00456
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GO:GO:0003676
Gene3D:2.20.70.10 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K12823 IPI:IPI00992350 RefSeq:NP_196965.2 UniGene:At.43560
ProteinModelPortal:F4K6V1 SMR:F4K6V1 PRIDE:F4K6V1
EnsemblPlants:AT5G14610.1 GeneID:831313 KEGG:ath:AT5G14610
OMA:YLIPGFM Uniprot:F4K6V1
Length = 712
Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
Identities = 164/379 (43%), Positives = 236/379 (62%)
Query: 66 PDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTG 125
P+F P F ++ P R + + F+ PSPIQAQ+WPI M D++ IA+TG+G
Sbjct: 220 PNFLRCPPAAGFN-SYLVLPANGRMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSG 278
Query: 126 KTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVY 184
KT +L+P +H LQ R GP++LV++PTRELATQI+ E K + C+Y
Sbjct: 279 KTLGYLIPGFMH--LQRIHNDSRMGPTILVLSPTRELATQIQVEALKFGKSSKISCACLY 336
Query: 185 GGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQI 244
GG PQL++I G I++ATPGRLND + I L VS++VLDEADRMLD+GFEPQI
Sbjct: 337 GGAPKGPQLKEIERGVDIVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQI 396
Query: 245 NKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLD-LAATHTVTQKIIILD 303
K + RQT+M +ATW K+V+++A +VNP +VN+G++D L A ++TQ I +L
Sbjct: 397 RKIVNEVPTKRQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLA 456
Query: 304 EDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREI 363
EK L + + E K+++F K ++ +L + + +++GD SQ +R+
Sbjct: 457 PMEKHSRLEQILRSQ-EPGSKIIIFCSTKRMCDQLARNLTRTFG-AAAIHGDKSQAERDD 514
Query: 364 ALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESI 423
L SG + VATDVA+RGLDV D+ V+NYDFP+ +E+YVHR+GRTGRAG +G +
Sbjct: 515 VLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAY 574
Query: 424 TLMTRKDWSHAHEIIPILE 442
T +D HA ++I ILE
Sbjct: 575 TFFGDQDAKHASDLIKILE 593
Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
Identities = 152/351 (43%), Positives = 219/351 (62%)
Query: 586 PDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTG 645
P+F P F ++ P R + + F+ PSPIQAQ+WPI M D++ IA+TG+G
Sbjct: 220 PNFLRCPPAAGFN-SYLVLPANGRMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSG 278
Query: 646 KTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVY 704
KT +L+P +H LQ R GP++LV++PTRELATQI+ E K + C+Y
Sbjct: 279 KTLGYLIPGFMH--LQRIHNDSRMGPTILVLSPTRELATQIQVEALKFGKSSKISCACLY 336
Query: 705 GGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQI 764
GG PQL++I G I++ATPGRLND + I L VS++VLDEADRMLD+GFEPQI
Sbjct: 337 GGAPKGPQLKEIERGVDIVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQI 396
Query: 765 NKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLD-LAATHTVTQKIIILD 823
K + RQT+M +ATW K+V+++A +VNP +VN+G++D L A ++TQ I +L
Sbjct: 397 RKIVNEVPTKRQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLA 456
Query: 824 EDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREI 883
EK L + + E K+++F K ++ +L + + +++GD SQ +R+
Sbjct: 457 PMEKHSRLEQILRSQ-EPGSKIIIFCSTKRMCDQLARNLTRTFG-AAAIHGDKSQAERDD 514
Query: 884 ALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
L SG + VATDVA+RGLDV D+ V+NYDFP+ +E+YVHR+GRTG
Sbjct: 515 VLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTG 565
>MGI|MGI:1920895 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1920895
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T ChiTaRS:DDX46 EMBL:AK129220 EMBL:BC026492
EMBL:BC092240 IPI:IPI00468896 IPI:IPI00660556 RefSeq:NP_666087.3
UniGene:Mm.202725 ProteinModelPortal:Q569Z5 SMR:Q569Z5
STRING:Q569Z5 PhosphoSite:Q569Z5 PaxDb:Q569Z5 PRIDE:Q569Z5
Ensembl:ENSMUST00000172272 GeneID:212880 KEGG:mmu:212880
UCSC:uc011yzx.1 InParanoid:Q569Z5 OMA:IEEENKF NextBio:373723
Bgee:Q569Z5 CleanEx:MM_DDX46 Genevestigator:Q569Z5
GermOnline:ENSMUSG00000021500 Uniprot:Q569Z5
Length = 1032
Score = 757 (271.5 bits), Expect = 1.5e-77, Sum P(2) = 1.5e-77
Identities = 169/426 (39%), Positives = 252/426 (59%)
Query: 24 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQH 83
KN Y E PE+A M+ E+V FR + I+V G+ P P+ S+ Q
Sbjct: 333 KNFYVEVPELAKMSQEEVNVFRLEMEGITVK-----GK-------GCPKPIKSWVQCGIS 380
Query: 84 YPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTT 143
+IL L+ + P+PIQ QA P +MSG D+IGIA+TG+GKT AFLLP H Q +
Sbjct: 381 M-KILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS 439
Query: 144 PISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEIEPQLEKIREGCHI 202
+ E GP ++M PTRELA QI +E K GL+ VCVYGG I Q+ +++ G I
Sbjct: 440 -LEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEI 498
Query: 203 LIATPGRLNDFVSRAS---IDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVM 259
++ TPGR+ D ++ S +L+ V++VVLDEADRM D+GFEPQ+ + + P+RQTVM
Sbjct: 499 IVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVM 558
Query: 260 TSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMD 319
SAT+ + ++ +A++ + P++V VG + + V Q++I+++E++K L+E +
Sbjct: 559 FSATFPRAMEALARRILSKPIEVQVGGRSVVCSD-VEQQVIVIEEEKKFLKLLELLGHY- 616
Query: 320 EERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVAT 379
+E V++F+ ++ + DL SL+G + Q DR+ + D +G ++ VAT
Sbjct: 617 QESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVAT 676
Query: 380 DVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIP 439
VA+RGLDV L V+NY P+H E+YVHR GRTGRAG G + T +T +A +II
Sbjct: 677 SVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIK 736
Query: 440 ILEEGG 445
LE G
Sbjct: 737 ALELSG 742
Score = 706 (253.6 bits), Expect = 3.6e-75, Sum P(3) = 3.6e-75
Identities = 156/395 (39%), Positives = 236/395 (59%)
Query: 544 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQH 603
KN Y E PE+A M+ E+V FR + I+V G+ P P+ S+ Q
Sbjct: 333 KNFYVEVPELAKMSQEEVNVFRLEMEGITVK-----GK-------GCPKPIKSWVQCGIS 380
Query: 604 YPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTT 663
+IL L+ + P+PIQ QA P +MSG D+IGIA+TG+GKT AFLLP H Q +
Sbjct: 381 M-KILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS 439
Query: 664 PISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKELEPQLEKIREGCHI 722
+ E GP ++M PTRELA QI +E K GL+ VCVYGG + Q+ +++ G I
Sbjct: 440 -LEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEI 498
Query: 723 LIATPGRLNDFVSRAS---IDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVM 779
++ TPGR+ D ++ S +L+ V++VVLDEADRM D+GFEPQ+ + + P+RQTVM
Sbjct: 499 IVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVM 558
Query: 780 TSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMD 839
SAT+ + ++ +A++ + P++V VG + + V Q++I+++E++K L+E +
Sbjct: 559 FSATFPRAMEALARRILSKPIEVQVGGRSVVCSD-VEQQVIVIEEEKKFLKLLELLGHY- 616
Query: 840 EERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVAT 899
+E V++F+ ++ + DL SL+G + Q DR+ + D +G ++ VAT
Sbjct: 617 QESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVAT 676
Query: 900 DVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
VA+RGLDV L V+NY P+H E+YVHR GRTG
Sbjct: 677 SVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTG 711
Score = 51 (23.0 bits), Expect = 3.6e-75, Sum P(3) = 3.6e-75
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 266 KDVQRVAKKYMVNPVKVNVGSLDLAA-THT-----VTQKIIILDEDEKKDWLME 313
++V+ KK+ + VK G+ + T T VT K ++D D+KK LME
Sbjct: 233 EEVKEEVKKFNMRSVKGGAGNEKKSGPTVTKVVTVVTTKKAVVDADKKKGELME 286
Score = 42 (19.8 bits), Expect = 1.5e-77, Sum P(2) = 1.5e-77
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 1 MEELMALSDRKER-DKWAREP--KIIKNVYKEDPEVANM 36
+EE M RKER +KW E K ++N+ + E+ M
Sbjct: 156 LEEEMR--KRKERVEKWREEQRKKAMENIGELKKEIEEM 192
Score = 42 (19.8 bits), Expect = 1.8e-71, Sum P(2) = 1.8e-71
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 521 MEELMALSDRKER-DKWAREP--KIIKNVYKEDPEVANM 556
+EE M RKER +KW E K ++N+ + E+ M
Sbjct: 156 LEEEMR--KRKERVEKWREEQRKKAMENIGELKKEIEEM 192
>UNIPROTKB|F1PK90 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AAEX03007786
Ensembl:ENSCAFT00000001619 Uniprot:F1PK90
Length = 1032
Score = 757 (271.5 bits), Expect = 1.5e-77, Sum P(2) = 1.5e-77
Identities = 169/426 (39%), Positives = 252/426 (59%)
Query: 24 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQH 83
KN Y E PE+A M+ E+V FR + I+V G+ P P+ S+ Q
Sbjct: 333 KNFYVEVPELAKMSQEEVNVFRLEMEGITVK-----GK-------GCPKPIKSWVQCGIS 380
Query: 84 YPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTT 143
+IL L+ + P+PIQ QA P +MSG D+IGIA+TG+GKT AFLLP H Q +
Sbjct: 381 M-KILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS 439
Query: 144 PISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEIEPQLEKIREGCHI 202
+ E GP ++M PTRELA QI +E K GL+ VCVYGG I Q+ +++ G I
Sbjct: 440 -LEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEI 498
Query: 203 LIATPGRLNDFVSRAS---IDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVM 259
++ TPGR+ D ++ S +L+ V++VVLDEADRM D+GFEPQ+ + + P+RQTVM
Sbjct: 499 IVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVM 558
Query: 260 TSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMD 319
SAT+ + ++ +A++ + P++V VG + + V Q++I+++E++K L+E +
Sbjct: 559 FSATFPRAMEALARRILSKPIEVQVGGRSVVCSD-VEQQVIVIEEEKKFLKLLELLGHY- 616
Query: 320 EERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVAT 379
+E V++F+ ++ + DL SL+G + Q DR+ + D +G ++ VAT
Sbjct: 617 QESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVAT 676
Query: 380 DVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIP 439
VA+RGLDV L V+NY P+H E+YVHR GRTGRAG G + T +T +A +II
Sbjct: 677 SVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIK 736
Query: 440 ILEEGG 445
LE G
Sbjct: 737 ALELSG 742
Score = 706 (253.6 bits), Expect = 5.9e-75, Sum P(3) = 5.9e-75
Identities = 156/395 (39%), Positives = 236/395 (59%)
Query: 544 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQH 603
KN Y E PE+A M+ E+V FR + I+V G+ P P+ S+ Q
Sbjct: 333 KNFYVEVPELAKMSQEEVNVFRLEMEGITVK-----GK-------GCPKPIKSWVQCGIS 380
Query: 604 YPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTT 663
+IL L+ + P+PIQ QA P +MSG D+IGIA+TG+GKT AFLLP H Q +
Sbjct: 381 M-KILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS 439
Query: 664 PISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKELEPQLEKIREGCHI 722
+ E GP ++M PTRELA QI +E K GL+ VCVYGG + Q+ +++ G I
Sbjct: 440 -LEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEI 498
Query: 723 LIATPGRLNDFVSRAS---IDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVM 779
++ TPGR+ D ++ S +L+ V++VVLDEADRM D+GFEPQ+ + + P+RQTVM
Sbjct: 499 IVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVM 558
Query: 780 TSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMD 839
SAT+ + ++ +A++ + P++V VG + + V Q++I+++E++K L+E +
Sbjct: 559 FSATFPRAMEALARRILSKPIEVQVGGRSVVCSD-VEQQVIVIEEEKKFLKLLELLGHY- 616
Query: 840 EERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVAT 899
+E V++F+ ++ + DL SL+G + Q DR+ + D +G ++ VAT
Sbjct: 617 QESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVAT 676
Query: 900 DVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
VA+RGLDV L V+NY P+H E+YVHR GRTG
Sbjct: 677 SVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTG 711
Score = 49 (22.3 bits), Expect = 5.9e-75, Sum P(3) = 5.9e-75
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 266 KDVQRVAKKYMVNPVKVNVGSLDLAA-THT-----VTQKIIILDEDEKKDWLME 313
++V+ KK+ + VK G+ + T T VT K ++D D+KK LME
Sbjct: 233 EEVKEEVKKFNMRSVKGGGGNEKKSGPTVTKVVTVVTTKKAVVDSDKKKGELME 286
Score = 42 (19.8 bits), Expect = 1.5e-77, Sum P(2) = 1.5e-77
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 1 MEELMALSDRKER-DKWAREP--KIIKNVYKEDPEVANM 36
+EE M RKER +KW E K ++N+ + E+ M
Sbjct: 156 LEEEMR--KRKERVEKWREEQRKKAMENIGELKKEIEEM 192
Score = 42 (19.8 bits), Expect = 1.8e-71, Sum P(2) = 1.8e-71
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 521 MEELMALSDRKER-DKWAREP--KIIKNVYKEDPEVANM 556
+EE M RKER +KW E K ++N+ + E+ M
Sbjct: 156 LEEEMR--KRKERVEKWREEQRKKAMENIGELKKEIEEM 192
>UNIPROTKB|Q7L014 [details] [associations]
symbol:DDX46 "Probable ATP-dependent RNA helicase DDX46"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0015030 "Cajal body" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12811 EMBL:AF106680 EMBL:AB018344 EMBL:BC012304 EMBL:BK000565
IPI:IPI00329791 RefSeq:NP_055644.2 UniGene:Hs.406549
ProteinModelPortal:Q7L014 SMR:Q7L014 IntAct:Q7L014
MINT:MINT-3002486 STRING:Q7L014 PhosphoSite:Q7L014 DMDM:116241326
PaxDb:Q7L014 PeptideAtlas:Q7L014 PRIDE:Q7L014
Ensembl:ENST00000354283 Ensembl:ENST00000452510 GeneID:9879
KEGG:hsa:9879 UCSC:uc003kzw.3 CTD:9879 GeneCards:GC05P134094
HGNC:HGNC:18681 HPA:HPA036554 neXtProt:NX_Q7L014
PharmGKB:PA134894452 HOGENOM:HOG000007229 HOVERGEN:HBG081426
InParanoid:Q7L014 OrthoDB:EOG441Q9T ChiTaRS:DDX46 GenomeRNAi:9879
NextBio:37233 PMAP-CutDB:Q7L014 ArrayExpress:Q7L014 Bgee:Q7L014
CleanEx:HS_DDX46 Genevestigator:Q7L014 GermOnline:ENSG00000145833
Uniprot:Q7L014
Length = 1031
Score = 757 (271.5 bits), Expect = 1.5e-77, Sum P(2) = 1.5e-77
Identities = 169/426 (39%), Positives = 252/426 (59%)
Query: 24 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQH 83
KN Y E PE+A M+ E+V FR + I+V G+ P P+ S+ Q
Sbjct: 333 KNFYVEVPELAKMSQEEVNVFRLEMEGITVK-----GK-------GCPKPIKSWVQCGIS 380
Query: 84 YPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTT 143
+IL L+ + P+PIQ QA P +MSG D+IGIA+TG+GKT AFLLP H Q +
Sbjct: 381 M-KILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS 439
Query: 144 PISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEIEPQLEKIREGCHI 202
+ E GP ++M PTRELA QI +E K GL+ VCVYGG I Q+ +++ G I
Sbjct: 440 -LEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEI 498
Query: 203 LIATPGRLNDFVSRAS---IDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVM 259
++ TPGR+ D ++ S +L+ V++VVLDEADRM D+GFEPQ+ + + P+RQTVM
Sbjct: 499 IVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVM 558
Query: 260 TSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMD 319
SAT+ + ++ +A++ + P++V VG + + V Q++I+++E++K L+E +
Sbjct: 559 FSATFPRAMEALARRILSKPIEVQVGGRSVVCSD-VEQQVIVIEEEKKFLKLLELLGHY- 616
Query: 320 EERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVAT 379
+E V++F+ ++ + DL SL+G + Q DR+ + D +G ++ VAT
Sbjct: 617 QESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVAT 676
Query: 380 DVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIP 439
VA+RGLDV L V+NY P+H E+YVHR GRTGRAG G + T +T +A +II
Sbjct: 677 SVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIK 736
Query: 440 ILEEGG 445
LE G
Sbjct: 737 ALELSG 742
Score = 706 (253.6 bits), Expect = 5.7e-75, Sum P(3) = 5.7e-75
Identities = 156/395 (39%), Positives = 236/395 (59%)
Query: 544 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQH 603
KN Y E PE+A M+ E+V FR + I+V G+ P P+ S+ Q
Sbjct: 333 KNFYVEVPELAKMSQEEVNVFRLEMEGITVK-----GK-------GCPKPIKSWVQCGIS 380
Query: 604 YPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTT 663
+IL L+ + P+PIQ QA P +MSG D+IGIA+TG+GKT AFLLP H Q +
Sbjct: 381 M-KILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS 439
Query: 664 PISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKELEPQLEKIREGCHI 722
+ E GP ++M PTRELA QI +E K GL+ VCVYGG + Q+ +++ G I
Sbjct: 440 -LEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEI 498
Query: 723 LIATPGRLNDFVSRAS---IDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVM 779
++ TPGR+ D ++ S +L+ V++VVLDEADRM D+GFEPQ+ + + P+RQTVM
Sbjct: 499 IVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVM 558
Query: 780 TSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMD 839
SAT+ + ++ +A++ + P++V VG + + V Q++I+++E++K L+E +
Sbjct: 559 FSATFPRAMEALARRILSKPIEVQVGGRSVVCSD-VEQQVIVIEEEKKFLKLLELLGHY- 616
Query: 840 EERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVAT 899
+E V++F+ ++ + DL SL+G + Q DR+ + D +G ++ VAT
Sbjct: 617 QESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVAT 676
Query: 900 DVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
VA+RGLDV L V+NY P+H E+YVHR GRTG
Sbjct: 677 SVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTG 711
Score = 49 (22.3 bits), Expect = 5.7e-75, Sum P(3) = 5.7e-75
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 266 KDVQRVAKKYMVNPVKVNVGSLDLAA-THT-----VTQKIIILDEDEKKDWLME 313
++V+ KK+ + VK G+ + T T VT K ++D D+KK LME
Sbjct: 233 EEVKEEVKKFNMRSVKGGGGNEKKSGPTVTKVVTVVTTKKAVVDSDKKKGELME 286
Score = 42 (19.8 bits), Expect = 1.5e-77, Sum P(2) = 1.5e-77
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 1 MEELMALSDRKER-DKWAREP--KIIKNVYKEDPEVANM 36
+EE M RKER +KW E K ++N+ + E+ M
Sbjct: 156 LEEEMR--KRKERVEKWREEQRKKAMENIGELKKEIEEM 192
Score = 42 (19.8 bits), Expect = 1.7e-71, Sum P(2) = 1.7e-71
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 521 MEELMALSDRKER-DKWAREP--KIIKNVYKEDPEVANM 556
+EE M RKER +KW E K ++N+ + E+ M
Sbjct: 156 LEEEMR--KRKERVEKWREEQRKKAMENIGELKKEIEEM 192
>UNIPROTKB|I3LR20 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:FP312757
Ensembl:ENSSSCT00000027801 Uniprot:I3LR20
Length = 1032
Score = 757 (271.5 bits), Expect = 1.5e-77, Sum P(2) = 1.5e-77
Identities = 169/426 (39%), Positives = 252/426 (59%)
Query: 24 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQH 83
KN Y E PE+A M+ E+V FR + I+V G+ P P+ S+ Q
Sbjct: 333 KNFYVEVPELAKMSQEEVNVFRLEMEGITVK-----GK-------GCPKPIKSWVQCGIS 380
Query: 84 YPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTT 143
+IL L+ + P+PIQ QA P +MSG D+IGIA+TG+GKT AFLLP H Q +
Sbjct: 381 M-KILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS 439
Query: 144 PISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEIEPQLEKIREGCHI 202
+ E GP ++M PTRELA QI +E K GL+ VCVYGG I Q+ +++ G I
Sbjct: 440 -LEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEI 498
Query: 203 LIATPGRLNDFVSRAS---IDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVM 259
++ TPGR+ D ++ S +L+ V++VVLDEADRM D+GFEPQ+ + + P+RQTVM
Sbjct: 499 IVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVM 558
Query: 260 TSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMD 319
SAT+ + ++ +A++ + P++V VG + + V Q++I+++E++K L+E +
Sbjct: 559 FSATFPRAMEALARRILSKPIEVQVGGRSVVCSD-VEQQVIVIEEEKKFLKLLELLGHY- 616
Query: 320 EERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVAT 379
+E V++F+ ++ + DL SL+G + Q DR+ + D +G ++ VAT
Sbjct: 617 QESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVAT 676
Query: 380 DVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIP 439
VA+RGLDV L V+NY P+H E+YVHR GRTGRAG G + T +T +A +II
Sbjct: 677 SVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIK 736
Query: 440 ILEEGG 445
LE G
Sbjct: 737 ALELSG 742
Score = 706 (253.6 bits), Expect = 5.9e-75, Sum P(3) = 5.9e-75
Identities = 156/395 (39%), Positives = 236/395 (59%)
Query: 544 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQH 603
KN Y E PE+A M+ E+V FR + I+V G+ P P+ S+ Q
Sbjct: 333 KNFYVEVPELAKMSQEEVNVFRLEMEGITVK-----GK-------GCPKPIKSWVQCGIS 380
Query: 604 YPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTT 663
+IL L+ + P+PIQ QA P +MSG D+IGIA+TG+GKT AFLLP H Q +
Sbjct: 381 M-KILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS 439
Query: 664 PISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKELEPQLEKIREGCHI 722
+ E GP ++M PTRELA QI +E K GL+ VCVYGG + Q+ +++ G I
Sbjct: 440 -LEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEI 498
Query: 723 LIATPGRLNDFVSRAS---IDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVM 779
++ TPGR+ D ++ S +L+ V++VVLDEADRM D+GFEPQ+ + + P+RQTVM
Sbjct: 499 IVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVM 558
Query: 780 TSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMD 839
SAT+ + ++ +A++ + P++V VG + + V Q++I+++E++K L+E +
Sbjct: 559 FSATFPRAMEALARRILSKPIEVQVGGRSVVCSD-VEQQVIVIEEEKKFLKLLELLGHY- 616
Query: 840 EERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVAT 899
+E V++F+ ++ + DL SL+G + Q DR+ + D +G ++ VAT
Sbjct: 617 QESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVAT 676
Query: 900 DVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
VA+RGLDV L V+NY P+H E+YVHR GRTG
Sbjct: 677 SVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTG 711
Score = 49 (22.3 bits), Expect = 5.9e-75, Sum P(3) = 5.9e-75
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 266 KDVQRVAKKYMVNPVKVNVGSLDLAA-THT-----VTQKIIILDEDEKKDWLME 313
++V+ KK+ + VK G+ + T T VT K ++D D+KK LME
Sbjct: 233 EEVKEEVKKFNMRSVKGGGGNEKKSGPTVTKVVTVVTTKKAVVDSDKKKGELME 286
Score = 42 (19.8 bits), Expect = 1.5e-77, Sum P(2) = 1.5e-77
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 1 MEELMALSDRKER-DKWAREP--KIIKNVYKEDPEVANM 36
+EE M RKER +KW E K ++N+ + E+ M
Sbjct: 156 LEEEMR--KRKERVEKWREEQRKKAMENIGELKKEIEEM 192
Score = 42 (19.8 bits), Expect = 1.8e-71, Sum P(2) = 1.8e-71
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 521 MEELMALSDRKER-DKWAREP--KIIKNVYKEDPEVANM 556
+EE M RKER +KW E K ++N+ + E+ M
Sbjct: 156 LEEEMR--KRKERVEKWREEQRKKAMENIGELKKEIEEM 192
>UNIPROTKB|F1MX40 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:DAAA02020348
EMBL:DAAA02020349 IPI:IPI00703383 Ensembl:ENSBTAT00000028682
Uniprot:F1MX40
Length = 1032
Score = 755 (270.8 bits), Expect = 2.5e-77, Sum P(2) = 2.5e-77
Identities = 169/426 (39%), Positives = 252/426 (59%)
Query: 24 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQH 83
KN Y E PE+A M+ E+V FR + I+V G+ P P+ S+ Q
Sbjct: 333 KNFYVEVPELAKMSLEEVNVFRLEMEGITVK-----GK-------GCPKPIKSWVQCGIS 380
Query: 84 YPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTT 143
+IL L+ + P+PIQ QA P +MSG D+IGIA+TG+GKT AFLLP H Q +
Sbjct: 381 M-KILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS 439
Query: 144 PISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEIEPQLEKIREGCHI 202
+ E GP ++M PTRELA QI +E K GL+ VCVYGG I Q+ +++ G I
Sbjct: 440 -LEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEI 498
Query: 203 LIATPGRLNDFVSRAS---IDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVM 259
++ TPGR+ D ++ S +L+ V++VVLDEADRM D+GFEPQ+ + + P+RQTVM
Sbjct: 499 IVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVM 558
Query: 260 TSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMD 319
SAT+ + ++ +A++ + P++V VG + + V Q++I+++E++K L+E +
Sbjct: 559 FSATFPRAMEALARRILSKPIEVQVGGRSVVCSD-VEQQVIVIEEEKKFLKLLELLGHY- 616
Query: 320 EERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVAT 379
+E V++F+ ++ + DL SL+G + Q DR+ + D +G ++ VAT
Sbjct: 617 QESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVAT 676
Query: 380 DVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIP 439
VA+RGLDV L V+NY P+H E+YVHR GRTGRAG G + T +T +A +II
Sbjct: 677 SVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIK 736
Query: 440 ILEEGG 445
LE G
Sbjct: 737 ALELSG 742
Score = 704 (252.9 bits), Expect = 1.1e-74, Sum P(3) = 1.1e-74
Identities = 156/395 (39%), Positives = 236/395 (59%)
Query: 544 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQH 603
KN Y E PE+A M+ E+V FR + I+V G+ P P+ S+ Q
Sbjct: 333 KNFYVEVPELAKMSLEEVNVFRLEMEGITVK-----GK-------GCPKPIKSWVQCGIS 380
Query: 604 YPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTT 663
+IL L+ + P+PIQ QA P +MSG D+IGIA+TG+GKT AFLLP H Q +
Sbjct: 381 M-KILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS 439
Query: 664 PISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKELEPQLEKIREGCHI 722
+ E GP ++M PTRELA QI +E K GL+ VCVYGG + Q+ +++ G I
Sbjct: 440 -LEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEI 498
Query: 723 LIATPGRLNDFVSRAS---IDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVM 779
++ TPGR+ D ++ S +L+ V++VVLDEADRM D+GFEPQ+ + + P+RQTVM
Sbjct: 499 IVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVM 558
Query: 780 TSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMD 839
SAT+ + ++ +A++ + P++V VG + + V Q++I+++E++K L+E +
Sbjct: 559 FSATFPRAMEALARRILSKPIEVQVGGRSVVCSD-VEQQVIVIEEEKKFLKLLELLGHY- 616
Query: 840 EERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVAT 899
+E V++F+ ++ + DL SL+G + Q DR+ + D +G ++ VAT
Sbjct: 617 QESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVAT 676
Query: 900 DVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
VA+RGLDV L V+NY P+H E+YVHR GRTG
Sbjct: 677 SVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTG 711
Score = 49 (22.3 bits), Expect = 1.1e-74, Sum P(3) = 1.1e-74
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 266 KDVQRVAKKYMVNPVKVNVGSLDLAA-THT-----VTQKIIILDEDEKKDWLME 313
++V+ KK+ + VK G+ + T T VT K ++D D+KK LME
Sbjct: 233 EEVKEEVKKFNMRSVKGGGGNEKKSGPTVTKVVTVVTTKKAVVDSDKKKGELME 286
Score = 42 (19.8 bits), Expect = 2.5e-77, Sum P(2) = 2.5e-77
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 1 MEELMALSDRKER-DKWAREP--KIIKNVYKEDPEVANM 36
+EE M RKER +KW E K ++N+ + E+ M
Sbjct: 156 LEEEMR--KRKERVEKWREEQRKKAMENIGELKKEIEEM 192
Score = 42 (19.8 bits), Expect = 3.2e-71, Sum P(2) = 3.2e-71
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 521 MEELMALSDRKER-DKWAREP--KIIKNVYKEDPEVANM 556
+EE M RKER +KW E K ++N+ + E+ M
Sbjct: 156 LEEEMR--KRKERVEKWREEQRKKAMENIGELKKEIEEM 192
>ZFIN|ZDB-GENE-030131-667 [details] [associations]
symbol:ddx46 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 46" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP] [GO:0031017 "exocrine
pancreas development" evidence=IMP] [GO:0007420 "brain development"
evidence=IMP] [GO:0048546 "digestive tract morphogenesis"
evidence=IMP] [GO:0072576 "liver morphogenesis" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-667
GO:GO:0005524 GO:GO:0007420 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0048546
GO:GO:0008026 GO:GO:0031017 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF GO:GO:0072576
EMBL:CU302316 IPI:IPI00865887 Ensembl:ENSDART00000099265
ArrayExpress:F1RA00 Bgee:F1RA00 Uniprot:F1RA00
Length = 1035
Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
Identities = 170/438 (38%), Positives = 257/438 (58%)
Query: 12 ERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIP 71
+ K EP KN Y E PE+A M+PE+V +R + ISV G+ P
Sbjct: 307 DHQKIQYEP-FRKNFYVEVPELARMSPEEVSEYRLELEGISVK-----GK-------GCP 353
Query: 72 NPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFL 131
P+ ++ Q ++L L+ ++ P+PIQAQA P +MSG D+IGIA+TG+GKT AFL
Sbjct: 354 KPIKTWVQCGISM-KVLNALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFL 412
Query: 132 LPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEIE 190
LP H L P+ E GP ++M PTRELA QI +E K L+ VCVYGG I
Sbjct: 413 LPMFRHI-LDQRPVGEAEGPLAVIMTPTRELALQITKECKKFSKSLALRVVCVYGGTGIS 471
Query: 191 PQLEKIREGCHILIATPGRLNDFVSRAS---IDLKAVSFVVLDEADRMLDLGFEPQINKT 247
Q+ +++ G I++ TPGR+ D + + +L+ V++VV+DEADRM D+GFEPQ+ +
Sbjct: 472 EQIAELKRGAEIIVCTPGRMIDMLGANNGRVTNLRRVTYVVIDEADRMFDMGFEPQVMRI 531
Query: 248 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEK 307
+ P+RQTVM SAT+ + ++ +A++ + PV+V VG + + V Q +I+++E++K
Sbjct: 532 VDNVRPDRQTVMFSATFPRTMEALARRILSKPVEVQVGGRSVVCSD-VEQHVIVIEEEKK 590
Query: 308 KDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALED 367
L+E + +E+ V++F+ ++ + DL SL+G + Q DR+ + D
Sbjct: 591 FLKLLEILGHY-QEKGSVIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIIND 649
Query: 368 ITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMT 427
+G R+ VAT VA+RGLDV L V+NY P+H E+YVHR GRTGRAG G + T +T
Sbjct: 650 FKNGACRLLVATSVAARGLDVKQLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFIT 709
Query: 428 RKDWSHAHEIIPILEEGG 445
++ +I+ LE G
Sbjct: 710 EGQARYSGDILKALELSG 727
Score = 721 (258.9 bits), Expect = 5.0e-71, P = 5.0e-71
Identities = 159/407 (39%), Positives = 241/407 (59%)
Query: 532 ERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIP 591
+ K EP KN Y E PE+A M+PE+V +R + ISV G+ P
Sbjct: 307 DHQKIQYEP-FRKNFYVEVPELARMSPEEVSEYRLELEGISVK-----GK-------GCP 353
Query: 592 NPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFL 651
P+ ++ Q ++L L+ ++ P+PIQAQA P +MSG D+IGIA+TG+GKT AFL
Sbjct: 354 KPIKTWVQCGISM-KVLNALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFL 412
Query: 652 LPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKELE 710
LP H L P+ E GP ++M PTRELA QI +E K L+ VCVYGG +
Sbjct: 413 LPMFRHI-LDQRPVGEAEGPLAVIMTPTRELALQITKECKKFSKSLALRVVCVYGGTGIS 471
Query: 711 PQLEKIREGCHILIATPGRLNDFVSRAS---IDLKAVSFVVLDEADRMLDLGFEPQINKT 767
Q+ +++ G I++ TPGR+ D + + +L+ V++VV+DEADRM D+GFEPQ+ +
Sbjct: 472 EQIAELKRGAEIIVCTPGRMIDMLGANNGRVTNLRRVTYVVIDEADRMFDMGFEPQVMRI 531
Query: 768 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEK 827
+ P+RQTVM SAT+ + ++ +A++ + PV+V VG + + V Q +I+++E++K
Sbjct: 532 VDNVRPDRQTVMFSATFPRTMEALARRILSKPVEVQVGGRSVVCSD-VEQHVIVIEEEKK 590
Query: 828 KDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALED 887
L+E + +E+ V++F+ ++ + DL SL+G + Q DR+ + D
Sbjct: 591 FLKLLEILGHY-QEKGSVIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIIND 649
Query: 888 ITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
+G R+ VAT VA+RGLDV L V+NY P+H E+YVHR GRTG
Sbjct: 650 FKNGACRLLVATSVAARGLDVKQLILVVNYSCPNHYEDYVHRAGRTG 696
>UNIPROTKB|E9PT29 [details] [associations]
symbol:Ddx17 "Protein Ddx17" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 IPI:IPI00858352
PRIDE:E9PT29 Ensembl:ENSRNOT00000018185 Uniprot:E9PT29
Length = 651
Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
Identities = 175/442 (39%), Positives = 262/442 (59%)
Query: 9 DRKERDKW--AREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENP 66
+R + KW + PK KN Y E PEVA +TP +V+ R+K +I+V G +
Sbjct: 36 ERLRKKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKK-EITVR----GGDV---- 86
Query: 67 DFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTG 125
P PV +F A ++P+ ++ L + FT P+PIQ Q +P+ +SG DM+GIAQTG+G
Sbjct: 87 ---CPKPVFAFHHA--NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSG 141
Query: 126 KTFAFLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDYK--GLKAVC 182
KT A+LLPA++H + Q P ER GP V V+ P + R +K L VC
Sbjct: 142 KTLAYLLPAIVHINHQ--PYLERGDGPIVSVL-PFFSTLFSVYRGGTDFKFKCSSLFWVC 198
Query: 183 VYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEP 242
G +LE + + I IATPGR+ DF+ +L+ +++VLDEADRMLD+GFEP
Sbjct: 199 FLGQSLKGQRLEWLSQCVEICIATPGRI-DFLESGKTNLRRCTYLVLDEADRMLDMGFEP 257
Query: 243 QINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIIL 302
QI K I P+RQT+M SATW K+V+++A+ ++ + ++NVG+L+L+A H + Q + +
Sbjct: 258 QIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVC 317
Query: 303 DEDEKKDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDR 361
E EK L++ + M E+ +K ++F+ K ++ + + ++GD SQ +R
Sbjct: 318 MESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPER 377
Query: 362 EIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGE 421
+ L + SG A I +ATDVASRGLDV D+ VINYD+P+ E+YVHR+GRT R+ G
Sbjct: 378 DWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGT 437
Query: 422 SITLMTRKDWSHAHEIIPILEE 443
+ T T + A E+I +LEE
Sbjct: 438 AYTFFTPGNLKQARELIKVLEE 459
Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
Identities = 167/413 (40%), Positives = 251/413 (60%)
Query: 529 DRKERDKW--AREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENP 586
+R + KW + PK KN Y E PEVA +TP +V+ R+K +I+V G +
Sbjct: 36 ERLRKKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKK-EITVR----GGDV---- 86
Query: 587 DFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTG 645
P PV +F A ++P+ ++ L + FT P+PIQ Q +P+ +SG DM+GIAQTG+G
Sbjct: 87 ---CPKPVFAFHHA--NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSG 141
Query: 646 KTFAFLLPALIHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDYK--GLKAVC 702
KT A+LLPA++H + Q P ER GP V V+ P + R +K L VC
Sbjct: 142 KTLAYLLPAIVHINHQ--PYLERGDGPIVSVL-PFFSTLFSVYRGGTDFKFKCSSLFWVC 198
Query: 703 VYGGKELEPQ-LEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFE 761
+ G+ L+ Q LE + + I IATPGR+ DF+ +L+ +++VLDEADRMLD+GFE
Sbjct: 199 -FLGQSLKGQRLEWLSQCVEICIATPGRI-DFLESGKTNLRRCTYLVLDEADRMLDMGFE 256
Query: 762 PQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIII 821
PQI K I P+RQT+M SATW K+V+++A+ ++ + ++NVG+L+L+A H + Q + +
Sbjct: 257 PQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDV 316
Query: 822 LDEDEKKDWLMEFFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQED 880
E EK L++ + M E+ +K ++F+ K ++ + + ++GD SQ +
Sbjct: 317 CMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPE 376
Query: 881 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRT 933
R+ L + SG A I +ATDVASRGLDV D+ VINYD+P+ E+YVHR+GRT
Sbjct: 377 RDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRT 429
>TAIR|locus:2034481 [details] [associations]
symbol:STRS1 "STRESS RESPONSE SUPPRESSOR 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510
"RNA methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005730
EMBL:AC079041 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811
OMA:DRILVFC EMBL:AC074309 EMBL:AY080680 EMBL:AY117298 EMBL:AJ010458
IPI:IPI00547293 PIR:A86444 PIR:T51739 RefSeq:NP_174479.1
UniGene:At.20258 ProteinModelPortal:Q9C551 SMR:Q9C551 STRING:Q9C551
PaxDb:Q9C551 PRIDE:Q9C551 EnsemblPlants:AT1G31970.1 GeneID:840087
KEGG:ath:AT1G31970 GeneFarm:911 TAIR:At1g31970 InParanoid:Q9C551
PhylomeDB:Q9C551 ProtClustDB:CLSN2682598 Genevestigator:Q9C551
GermOnline:AT1G31970 Uniprot:Q9C551
Length = 537
Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
Identities = 179/446 (40%), Positives = 259/446 (58%)
Query: 7 LSDRKERDKWAREPKII-KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDEN 65
LS+++++ K RE K KN K+ PE + E + + + VVT G E
Sbjct: 56 LSNKEKKKKRKREEKESEKNKKKDVPE-KKLEAEDLGEGESEQQKV---VVTGKGV--EE 109
Query: 66 PDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTG 125
+ + +F ++ + PE + +F PSPIQ+ WP L+ G D+IGIA+TG+G
Sbjct: 110 AKYAA---LKTFAES--NLPENVLDCCK-TFEKPSPIQSHTWPFLLDGRDLIGIAKTGSG 163
Query: 126 KTFAFLLPALIHTHLQTTPI---SERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAV 181
KT AF +PA++H + I S++ P+ LV++PTRELA QI + + GLK++
Sbjct: 164 KTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPCGLKSI 223
Query: 182 CVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFE 241
CVYGG PQ+ IR G I+I TPGRL D + + L VSFVVLDEADRMLD+GFE
Sbjct: 224 CVYGGSSKGPQISAIRSGVDIVIGTPGRLRDLIESNVLRLSDVSFVVLDEADRMLDMGFE 283
Query: 242 PQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYM-VNPVKVNVGSLDLAATHTVTQKII 300
+ N RQ VM SATW DV ++A+++M NP+KV +GS+DLAA H V Q I
Sbjct: 284 EPVRFILSNTNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIE 343
Query: 301 ILDEDEKKDWLMEFFDNMDE-ERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQE 359
+LDE + L+ + + ++++V+VF K + L + K+ S++G+ +Q
Sbjct: 344 VLDERARDQRLIALLEKYHKSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQS 403
Query: 360 DREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKS 419
+R +L G + VATDVA+RGLD+PD+ VINY FP E+YVHR+GRTGRAGK
Sbjct: 404 ERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKK 463
Query: 420 GESITLMTRKDWSHAHEIIPILEEGG 445
G + T T + A E++ +L E G
Sbjct: 464 GVAHTFFTPLNKGLAGELVNVLREAG 489
Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
Identities = 167/415 (40%), Positives = 242/415 (58%)
Query: 527 LSDRKERDKWAREPKII-KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDEN 585
LS+++++ K RE K KN K+ PE + E + + + VVT G E
Sbjct: 56 LSNKEKKKKRKREEKESEKNKKKDVPE-KKLEAEDLGEGESEQQKV---VVTGKGV--EE 109
Query: 586 PDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTG 645
+ + +F ++ + PE + +F PSPIQ+ WP L+ G D+IGIA+TG+G
Sbjct: 110 AKYAA---LKTFAES--NLPENVLDCCK-TFEKPSPIQSHTWPFLLDGRDLIGIAKTGSG 163
Query: 646 KTFAFLLPALIHTHLQTTPI---SERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAV 701
KT AF +PA++H + I S++ P+ LV++PTRELA QI + + GLK++
Sbjct: 164 KTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPCGLKSI 223
Query: 702 CVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFE 761
CVYGG PQ+ IR G I+I TPGRL D + + L VSFVVLDEADRMLD+GFE
Sbjct: 224 CVYGGSSKGPQISAIRSGVDIVIGTPGRLRDLIESNVLRLSDVSFVVLDEADRMLDMGFE 283
Query: 762 PQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYM-VNPVKVNVGSLDLAATHTVTQKII 820
+ N RQ VM SATW DV ++A+++M NP+KV +GS+DLAA H V Q I
Sbjct: 284 EPVRFILSNTNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIE 343
Query: 821 ILDEDEKKDWLMEFFDNMDE-ERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQE 879
+LDE + L+ + + ++++V+VF K + L + K+ S++G+ +Q
Sbjct: 344 VLDERARDQRLIALLEKYHKSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQS 403
Query: 880 DREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
+R +L G + VATDVA+RGLD+PD+ VINY FP E+YVHR+GRTG
Sbjct: 404 ERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTG 458
>FB|FBgn0030631 [details] [associations]
symbol:CG6227 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014298 GO:GO:0005681 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
HSSP:Q58083 GeneTree:ENSGT00610000086076 KO:K12811 OMA:RGRYKVL
EMBL:FJ764847 EMBL:FJ764848 EMBL:FJ764851 EMBL:FJ764853
EMBL:FJ764855 EMBL:FJ764858 FlyBase:FBgn0030631 EMBL:BT016090
RefSeq:NP_573020.2 UniGene:Dm.168 SMR:Q9VXW2 IntAct:Q9VXW2
EnsemblMetazoa:FBtr0074011 GeneID:32464 KEGG:dme:Dmel_CG6227
UCSC:CG6227-RA InParanoid:Q9VXW2 GenomeRNAi:32464 NextBio:778600
Uniprot:Q9VXW2
Length = 1224
Score = 752 (269.8 bits), Expect = 9.3e-74, P = 9.3e-74
Identities = 167/426 (39%), Positives = 249/426 (58%)
Query: 24 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQH 83
KN Y E PE+ MT VE +R +D+ V G P P+ ++ Q
Sbjct: 471 KNFYVEVPELTRMTAADVEKYR---SDLEGIQVKGKG---------CPKPIKTWAQCGVS 518
Query: 84 YPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTT 143
E + L L F P+PIQ QA P +MSG D+IGIA+TG+GKT AF+LP H L
Sbjct: 519 KKE-MEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHI-LDQP 576
Query: 144 PISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEIEPQLEKIREGCHI 202
+ + G ++MAPTREL QI +++ K GL+ VCVYGG I Q+ +++ G I
Sbjct: 577 SMEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEI 636
Query: 203 LIATPGRLNDFVSRAS---IDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVM 259
++ TPGR+ D ++ S +L+ V++VVLDEADRM D+GFEPQ+ + + P+RQTVM
Sbjct: 637 IVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVM 696
Query: 260 TSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMD 319
SAT+ + ++ +A++ + P++V VG + V Q ++IL++D K L+E +
Sbjct: 697 FSATFPRQMEALARRILKKPIEVIVGGRSVVCKE-VEQHVVILNDDAKFFKLLELL-GIY 754
Query: 320 EERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVAT 379
+E ++VF+ ++ + + DL SL+G + Q DR+ + D SG R+ +AT
Sbjct: 755 QEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIAT 814
Query: 380 DVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIP 439
VA+RGLDV DL V+NYD P+H E+YVHR GRTGRAGK G + T +T + +A +II
Sbjct: 815 SVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDIIR 874
Query: 440 ILEEGG 445
++ G
Sbjct: 875 AMDLSG 880
Score = 700 (251.5 bits), Expect = 4.0e-70, Sum P(2) = 4.0e-70
Identities = 155/395 (39%), Positives = 231/395 (58%)
Query: 544 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQH 603
KN Y E PE+ MT VE +R +D+ V G P P+ ++ Q
Sbjct: 471 KNFYVEVPELTRMTAADVEKYR---SDLEGIQVKGKG---------CPKPIKTWAQCGVS 518
Query: 604 YPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTT 663
E + L L F P+PIQ QA P +MSG D+IGIA+TG+GKT AF+LP H L
Sbjct: 519 KKE-MEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHI-LDQP 576
Query: 664 PISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKELEPQLEKIREGCHI 722
+ + G ++MAPTREL QI +++ K GL+ VCVYGG + Q+ +++ G I
Sbjct: 577 SMEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEI 636
Query: 723 LIATPGRLNDFVSRAS---IDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVM 779
++ TPGR+ D ++ S +L+ V++VVLDEADRM D+GFEPQ+ + + P+RQTVM
Sbjct: 637 IVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVM 696
Query: 780 TSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMD 839
SAT+ + ++ +A++ + P++V VG + V Q ++IL++D K L+E +
Sbjct: 697 FSATFPRQMEALARRILKKPIEVIVGGRSVVCKE-VEQHVVILNDDAKFFKLLELL-GIY 754
Query: 840 EERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVAT 899
+E ++VF+ ++ + + DL SL+G + Q DR+ + D SG R+ +AT
Sbjct: 755 QEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIAT 814
Query: 900 DVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
VA+RGLDV DL V+NYD P+H E+YVHR GRTG
Sbjct: 815 SVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTG 849
Score = 46 (21.3 bits), Expect = 4.0e-70, Sum P(2) = 4.0e-70
Identities = 26/102 (25%), Positives = 43/102 (42%)
Query: 9 DRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDF 68
D K+ K EP K E+P VA + E + S V Q + P+
Sbjct: 312 DTKKEIKKKPEPVAAKMEIVEEPTVAAGEKTKKEPEQPHVGAKSEPEVEDKPQPEAEPED 371
Query: 69 QIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPIL 110
+I +P+ ++ Q + +R++ N F P P ++Q IL
Sbjct: 372 EI-DPLDAYMQEVNNE---MRRVNN--FVNP-PAKSQGVVIL 406
Score = 43 (20.2 bits), Expect = 8.2e-70, Sum P(2) = 8.2e-70
Identities = 16/73 (21%), Positives = 29/73 (39%)
Query: 10 RKER-DKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDF 68
R+ER ++W E K P + N + + +D + + G+ D PD
Sbjct: 197 RRERIERWRAERKRDTKAAVVAPSLVNSAKKWSLEDESEEDDSNPAPPLDSGKKDAEPDS 256
Query: 69 QIPNPVTSFKQAF 81
P+ S ++ F
Sbjct: 257 P-PSKFHSIRKRF 268
>ZFIN|ZDB-GENE-050706-53 [details] [associations]
symbol:ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
42" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050706-53 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
EMBL:BX324157 IPI:IPI00774497 Ensembl:ENSDART00000076209
Uniprot:E7F401
Length = 910
Score = 711 (255.3 bits), Expect = 1.8e-72, Sum P(2) = 1.8e-72
Identities = 157/427 (36%), Positives = 246/427 (57%)
Query: 24 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQH 83
KN Y E E++++T +V R+K N + VS P P P TSF F
Sbjct: 219 KNFYNEHEEISSLTGAEVVELRRKLN-LKVSGAA--------P----PKPATSFAH-FGF 264
Query: 84 YPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTT 143
+++ Q+ +T P+PIQ Q PI +SG D IGIA+TG+GKT AF+ P L+H +
Sbjct: 265 DEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDAIGIAKTGSGKTAAFIWPILVHI-MDQK 323
Query: 144 PISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEIEPQLEKIREGCHI 202
+ GP +++ PTREL QI E + GL++V VYGG + Q + ++EG I
Sbjct: 324 ELEPGEGPIAVIVCPTRELCQQIHAECKRFGKAYGLRSVAVYGGGSMWEQAKALQEGAEI 383
Query: 203 LIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSA 262
++ TPGRL D V + + L+ V+F+V DEADRM D+GFE Q+ + ++ P+RQT++ SA
Sbjct: 384 VVCTPGRLIDHVKKKATSLQRVTFLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSA 443
Query: 263 TWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKK-DWLMEFFDNMDEE 321
T+ K ++++A+ +V+P++V G + A +TQ + +L + K WL
Sbjct: 444 TFRKKIEKLARDILVDPIRVVQGDIG-EANEDITQIVEVLQSGQDKWGWLTRRLVEFTSA 502
Query: 322 RDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDV 381
V+VF+ +KA+ ++++L + L+GD+ Q +R + D + VATDV
Sbjct: 503 -GSVLVFVTKKANCEELATNLIQEGYSLGLLHGDMDQSERNKVIADFKKKNLPVLVATDV 561
Query: 382 ASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPIL 441
A+RGLD+P + V+NYD I+ + HR+GRTGRAG+ G + TL+T KD S A +++ L
Sbjct: 562 AARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTTKDTSFAGDLVRNL 621
Query: 442 EEGGHES 448
E G ++S
Sbjct: 622 E-GANQS 627
Score = 648 (233.2 bits), Expect = 3.8e-62, P = 3.8e-62
Identities = 142/393 (36%), Positives = 223/393 (56%)
Query: 544 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQH 603
KN Y E E++++T +V R+K N + VS P P P TSF F
Sbjct: 219 KNFYNEHEEISSLTGAEVVELRRKLN-LKVSGAA--------P----PKPATSFAH-FGF 264
Query: 604 YPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTT 663
+++ Q+ +T P+PIQ Q PI +SG D IGIA+TG+GKT AF+ P L+H +
Sbjct: 265 DEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDAIGIAKTGSGKTAAFIWPILVHI-MDQK 323
Query: 664 PISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKELEPQLEKIREGCHI 722
+ GP +++ PTREL QI E + GL++V VYGG + Q + ++EG I
Sbjct: 324 ELEPGEGPIAVIVCPTRELCQQIHAECKRFGKAYGLRSVAVYGGGSMWEQAKALQEGAEI 383
Query: 723 LIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSA 782
++ TPGRL D V + + L+ V+F+V DEADRM D+GFE Q+ + ++ P+RQT++ SA
Sbjct: 384 VVCTPGRLIDHVKKKATSLQRVTFLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSA 443
Query: 783 TWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKK-DWLMEFFDNMDEE 841
T+ K ++++A+ +V+P++V G + A +TQ + +L + K WL
Sbjct: 444 TFRKKIEKLARDILVDPIRVVQGDIG-EANEDITQIVEVLQSGQDKWGWLTRRLVEFTSA 502
Query: 842 RDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDV 901
V+VF+ +KA+ ++++L + L+GD+ Q +R + D + VATDV
Sbjct: 503 -GSVLVFVTKKANCEELATNLIQEGYSLGLLHGDMDQSERNKVIADFKKKNLPVLVATDV 561
Query: 902 ASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
A+RGLD+P + V+NYD I+ + HR+GRTG
Sbjct: 562 AARGLDIPSIRTVVNYDVARDIDTHTHRIGRTG 594
Score = 40 (19.1 bits), Expect = 1.8e-72, Sum P(2) = 1.8e-72
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 615 SFTTPSPIQAQAWPILMSGHDMIGIAQTGT 644
SF+ P P P L SG M G + GT
Sbjct: 769 SFSMPPP------PALTSGIKMSGFSSAGT 792
>UNIPROTKB|A4RN46 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:242507 "Magnaporthe oryzae 70-15" [GO:0043581
"mycelium development" evidence=IEP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001232 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG40CMR1 RefSeq:XP_003713486.1
ProteinModelPortal:A4RN46 EnsemblFungi:MGG_15532T0 GeneID:12987087
KEGG:mgr:MGG_15532 Uniprot:A4RN46
Length = 1012
Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
Identities = 164/428 (38%), Positives = 247/428 (57%)
Query: 24 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQH 83
KN + E E++ MT +V R + + I VS G+ +P PV +
Sbjct: 339 KNFWVEPYELSEMTEAEVAELRLELDGIKVS-----GK-------DVPKPVQKWSLCGLT 386
Query: 84 YPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTT 143
P IL + L + P+ IQ QA P++MSG D++G+A+TG+GKT AFLLP H Q
Sbjct: 387 RP-ILDVIAKLEYDKPTAIQMQALPVIMSGRDVVGVAKTGSGKTMAFLLPMFRHIKDQE- 444
Query: 144 PISERAGPSVLVMAPTRELATQIEREVNK-IDYKGLKAVCVYGGKEIEPQLEKIREGCHI 202
P+ + GP L++ PTRELA QI R+ + GL+AVC YGG I+ Q+ ++ G I
Sbjct: 445 PVKDNEGPIGLILTPTRELAVQIFRDCKPFLKTLGLRAVCAYGGPPIKDQIADLKRGAEI 504
Query: 203 LIATPGRLNDFVSRAS---IDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVM 259
++AT GR+ D ++ + L+ +++VLDEADRM D+GFEPQ+ K + P+RQTV+
Sbjct: 505 VVATTGRMIDLLAANQGRVVSLRRTTYIVLDEADRMFDMGFEPQVMKIFANVRPDRQTVL 564
Query: 260 TSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMD 319
SAT K + + KK + NPV++ VG + A+ +TQ + I DE K + L+E +
Sbjct: 565 FSATMPKIMDALVKKVLKNPVEIEVGGKSVVASE-ITQIVEIRDEKSKFNRLLELLGELY 623
Query: 320 EERDKV--MVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICV 377
++ D V ++F+ R+ + +L + SL+G Q DR+ + D SG + +
Sbjct: 624 KDDDDVRSLIFVERQEKADELLRELLRKGYGCMSLHGGKDQVDRDSTISDFKSGVCPVMI 683
Query: 378 ATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEI 437
AT VA+RGLDV L V+NYD P+H+E+YVHR GRTGRAG +G ++T +T + + A I
Sbjct: 684 ATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFVTEEQENCAIGI 743
Query: 438 IPILEEGG 445
LE+ G
Sbjct: 744 AKALEQSG 751
Score = 676 (243.0 bits), Expect = 7.0e-68, Sum P(2) = 7.0e-68
Identities = 152/397 (38%), Positives = 229/397 (57%)
Query: 544 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQH 603
KN + E E++ MT +V R + + I VS G+ +P PV +
Sbjct: 339 KNFWVEPYELSEMTEAEVAELRLELDGIKVS-----GK-------DVPKPVQKWSLCGLT 386
Query: 604 YPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTT 663
P IL + L + P+ IQ QA P++MSG D++G+A+TG+GKT AFLLP H Q
Sbjct: 387 RP-ILDVIAKLEYDKPTAIQMQALPVIMSGRDVVGVAKTGSGKTMAFLLPMFRHIKDQE- 444
Query: 664 PISERAGPSVLVMAPTRELATQIEREVNK-IDYKGLKAVCVYGGKELEPQLEKIREGCHI 722
P+ + GP L++ PTRELA QI R+ + GL+AVC YGG ++ Q+ ++ G I
Sbjct: 445 PVKDNEGPIGLILTPTRELAVQIFRDCKPFLKTLGLRAVCAYGGPPIKDQIADLKRGAEI 504
Query: 723 LIATPGRLNDFVSRAS---IDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVM 779
++AT GR+ D ++ + L+ +++VLDEADRM D+GFEPQ+ K + P+RQTV+
Sbjct: 505 VVATTGRMIDLLAANQGRVVSLRRTTYIVLDEADRMFDMGFEPQVMKIFANVRPDRQTVL 564
Query: 780 TSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMD 839
SAT K + + KK + NPV++ VG + A+ +TQ + I DE K + L+E +
Sbjct: 565 FSATMPKIMDALVKKVLKNPVEIEVGGKSVVASE-ITQIVEIRDEKSKFNRLLELLGELY 623
Query: 840 EERDKV--MVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICV 897
++ D V ++F+ R+ + +L + SL+G Q DR+ + D SG + +
Sbjct: 624 KDDDDVRSLIFVERQEKADELLRELLRKGYGCMSLHGGKDQVDRDSTISDFKSGVCPVMI 683
Query: 898 ATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
AT VA+RGLDV L V+NYD P+H+E+YVHR GRTG
Sbjct: 684 ATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTG 720
Score = 40 (19.1 bits), Expect = 7.0e-68, Sum P(2) = 7.0e-68
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 152 SVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEP-QLEKIRE 198
+++ MA R+ ++E+ IDY L V V +EP +L ++ E
Sbjct: 311 AIMAMAAKRK-----KKEIPTIDYSKLDIVPVRKNFWVEPYELSEMTE 353
>DICTYBASE|DDB_G0288501 [details] [associations]
symbol:ddx42 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0288501 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000154_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000112 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
KO:K12835 RefSeq:XP_636700.1 ProteinModelPortal:Q54IV3
STRING:Q54IV3 EnsemblProtists:DDB0233432 GeneID:8626657
KEGG:ddi:DDB_G0288501 OMA:DRDKRGG Uniprot:Q54IV3
Length = 986
Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
Identities = 166/423 (39%), Positives = 253/423 (59%)
Query: 24 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQH 83
K Y+E P++AN+T EQV RK N DI ++ D + NPVTSF
Sbjct: 267 KIFYEEHPDIANLTEEQVFEIRK-NLDIRMT----------GTD--LINPVTSF--GHYG 311
Query: 84 YPEILRQ-LENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQT 142
+ +IL Q + S TP+PIQ QA PI +SG D+I IA+TG+GKT F+ P++ +H+
Sbjct: 312 FDDILLQAIAKQSIETPTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPSI--SHIMD 369
Query: 143 TPISERA-GPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGC 200
P E+ GP L +APTRELA QI E K Y LK +YGG + Q ++++ GC
Sbjct: 370 QPYLEKGDGPIALFLAPTRELAHQIYLETLKYSKYFKLKTTVLYGGVSKQQQCKELKAGC 429
Query: 201 HILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMT 260
I++ATPGRL D + + L VS++VLDEAD+M D GF PQ+ ++ P+RQT++
Sbjct: 430 EIIVATPGRLIDMIKLKATKLNRVSYLVLDEADKMFDFGFGPQVLSIVNHVRPDRQTLLF 489
Query: 261 SATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKK-DWLMEFFDNMD 319
SAT+ +V+ A+ + +P+K+++G + +A +TQ + +L D K +WL +
Sbjct: 490 SATFKPNVEEFARTILSDPIKISIGMIG-SANSDITQIVQVLKSDSDKWNWLTNQLALLL 548
Query: 320 EERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVAT 379
+ V++F+ K +V +SS+L ++C+L+GD +Q +R ++ G I +AT
Sbjct: 549 SQ-GSVLIFVSTKVAVEQLSSNLTKFGFQTCTLHGDKNQIERSQTIQTFKEGKINILIAT 607
Query: 380 DVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIP 439
DVA+RGLD+P + +V+NYD IE + HR+GRTGRAG +G + TL+T KD + ++I
Sbjct: 608 DVAARGLDIPLIKNVVNYDTSRDIESHTHRIGRTGRAGNTGVAYTLITPKDIHFSVDLIK 667
Query: 440 ILE 442
LE
Sbjct: 668 NLE 670
Score = 677 (243.4 bits), Expect = 2.7e-66, P = 2.7e-66
Identities = 154/395 (38%), Positives = 235/395 (59%)
Query: 544 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQH 603
K Y+E P++AN+T EQV RK N DI ++ D + NPVTSF
Sbjct: 267 KIFYEEHPDIANLTEEQVFEIRK-NLDIRMT----------GTD--LINPVTSF--GHYG 311
Query: 604 YPEILRQ-LENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQT 662
+ +IL Q + S TP+PIQ QA PI +SG D+I IA+TG+GKT F+ P++ +H+
Sbjct: 312 FDDILLQAIAKQSIETPTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPSI--SHIMD 369
Query: 663 TPISERA-GPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGC 720
P E+ GP L +APTRELA QI E K Y LK +YGG + Q ++++ GC
Sbjct: 370 QPYLEKGDGPIALFLAPTRELAHQIYLETLKYSKYFKLKTTVLYGGVSKQQQCKELKAGC 429
Query: 721 HILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMT 780
I++ATPGRL D + + L VS++VLDEAD+M D GF PQ+ ++ P+RQT++
Sbjct: 430 EIIVATPGRLIDMIKLKATKLNRVSYLVLDEADKMFDFGFGPQVLSIVNHVRPDRQTLLF 489
Query: 781 SATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKK-DWLMEFFDNMD 839
SAT+ +V+ A+ + +P+K+++G + +A +TQ + +L D K +WL +
Sbjct: 490 SATFKPNVEEFARTILSDPIKISIGMIG-SANSDITQIVQVLKSDSDKWNWLTNQLALLL 548
Query: 840 EERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVAT 899
+ V++F+ K +V +SS+L ++C+L+GD +Q +R ++ G I +AT
Sbjct: 549 SQ-GSVLIFVSTKVAVEQLSSNLTKFGFQTCTLHGDKNQIERSQTIQTFKEGKINILIAT 607
Query: 900 DVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
DVA+RGLD+P + +V+NYD IE + HR+GRTG
Sbjct: 608 DVAARGLDIPLIKNVVNYDTSRDIESHTHRIGRTG 642
>TAIR|locus:2037416 [details] [associations]
symbol:RCF1 "regulator of CBF gene expression 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003723 EMBL:AC007369
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
HOGENOM:HOG000007229 EMBL:BT002030 IPI:IPI00537100 PIR:H86341
RefSeq:NP_173516.1 UniGene:At.41680 UniGene:At.48212
ProteinModelPortal:Q8H0U8 SMR:Q8H0U8 PaxDb:Q8H0U8 PRIDE:Q8H0U8
EnsemblPlants:AT1G20920.1 GeneID:838685 KEGG:ath:AT1G20920
KEGG:dosa:Os08t0154225-00 KEGG:dosa:Os08t0159900-01 GeneFarm:1021
TAIR:At1g20920 InParanoid:Q8H0U8 OMA:QIHSDIR PhylomeDB:Q8H0U8
ProtClustDB:CLSN2679447 Genevestigator:Q8H0U8 GermOnline:AT1G20920
Uniprot:Q8H0U8
Length = 1166
Score = 727 (261.0 bits), Expect = 3.6e-71, P = 3.6e-71
Identities = 163/435 (37%), Positives = 250/435 (57%)
Query: 12 ERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIP 71
+ K EP KN Y E +++ MT E+V +RK ++ + V D +P
Sbjct: 480 DHSKIEYEP-FRKNFYIEVKDISRMTQEEVNTYRK---ELELKVHGKD----------VP 525
Query: 72 NPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFL 131
P+ + Q +IL ++ L++ P PIQ QA PI+MSG D IG+A+TG+GKT F+
Sbjct: 526 RPIKFWHQTGLT-SKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFV 584
Query: 132 LPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEIE 190
LP L H Q P+ GP LVMAPTREL QI ++ K G++ V VYGG +
Sbjct: 585 LPMLRHIKDQP-PVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVA 643
Query: 191 PQLEKIREGCHILIATPGRLNDFVSRAS---IDLKAVSFVVLDEADRMLDLGFEPQINKT 247
Q+ +++ G I++ TPGR+ D + +S +L+ V+F+V+DEADRM D+GFEPQI +
Sbjct: 644 QQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRI 703
Query: 248 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEK 307
I P RQTV+ SAT+ + V+ +A+K + PV++ VG + +TQ + + E ++
Sbjct: 704 IQNIRPERQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVV-NKDITQLVEVRPESDR 762
Query: 308 KDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALED 367
L+E E + K++VF+ + A+ D+ SL+G Q DRE + D
Sbjct: 763 FLRLLELLGEWSE-KGKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISD 821
Query: 368 ITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMT 427
+ + +AT VA+RGLDV +L V+N+D P+H E+YVHRVGRTGRAG+ G ++T ++
Sbjct: 822 FKNDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFIS 881
Query: 428 RKDWSHAHEIIPILE 442
D +A +++ LE
Sbjct: 882 EDDAKYAPDLVKALE 896
Score = 675 (242.7 bits), Expect = 1.6e-65, P = 1.6e-65
Identities = 154/407 (37%), Positives = 232/407 (57%)
Query: 532 ERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIP 591
+ K EP KN Y E +++ MT E+V +RK ++ + V D +P
Sbjct: 480 DHSKIEYEP-FRKNFYIEVKDISRMTQEEVNTYRK---ELELKVHGKD----------VP 525
Query: 592 NPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFL 651
P+ + Q +IL ++ L++ P PIQ QA PI+MSG D IG+A+TG+GKT F+
Sbjct: 526 RPIKFWHQTGLT-SKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFV 584
Query: 652 LPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKELE 710
LP L H Q P+ GP LVMAPTREL QI ++ K G++ V VYGG +
Sbjct: 585 LPMLRHIKDQP-PVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVA 643
Query: 711 PQLEKIREGCHILIATPGRLNDFVSRAS---IDLKAVSFVVLDEADRMLDLGFEPQINKT 767
Q+ +++ G I++ TPGR+ D + +S +L+ V+F+V+DEADRM D+GFEPQI +
Sbjct: 644 QQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRI 703
Query: 768 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEK 827
I P RQTV+ SAT+ + V+ +A+K + PV++ VG + +TQ + + E ++
Sbjct: 704 IQNIRPERQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVV-NKDITQLVEVRPESDR 762
Query: 828 KDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALED 887
L+E E + K++VF+ + A+ D+ SL+G Q DRE + D
Sbjct: 763 FLRLLELLGEWSE-KGKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISD 821
Query: 888 ITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
+ + +AT VA+RGLDV +L V+N+D P+H E+YVHRVGRTG
Sbjct: 822 FKNDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTG 868
>UNIPROTKB|E1BJD2 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:DAAA02049325 IPI:IPI00701280
Ensembl:ENSBTAT00000028046 Uniprot:E1BJD2
Length = 946
Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
Identities = 157/424 (37%), Positives = 244/424 (57%)
Query: 20 PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQ 79
P KN Y E E+ N+TP+Q+ R K N + VS P P P +SF
Sbjct: 211 PPFEKNFYNEHEEITNLTPQQLIDLRHKLN-LRVSGAA--------P----PRPGSSFAH 257
Query: 80 AFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH 139
F +++ Q+ +T P+PIQ Q P+ +SG DMIGIA+TG+GKT AF+ P LIH
Sbjct: 258 -FGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHI- 315
Query: 140 LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEIEPQLEKIRE 198
+ + GP +++ PTREL QI E + L++V VYGG + Q + ++E
Sbjct: 316 MDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQE 375
Query: 199 GCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTV 258
G I++ TPGRL D V + + +L+ VS++V DEADRM D+GFE Q+ + ++ P+RQT+
Sbjct: 376 GAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTL 435
Query: 259 MTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNM 318
+ SAT+ K ++++A+ +++P++V G + A VTQ + IL K +WL
Sbjct: 436 LFSATFRKKIEKLARDILIDPIRVVQGDIG-EANEDVTQIVEILHSGSKWNWLTRRLVEF 494
Query: 319 DEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVA 378
V++F+ +KA+ ++++L + L+GD+ Q +R + D + VA
Sbjct: 495 TSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVA 553
Query: 379 TDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEII 438
TDVA+RGLD+P + VINYD I+ + HR+GRTGRAG+ G + TL+T KD + A +++
Sbjct: 554 TDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLV 613
Query: 439 PILE 442
LE
Sbjct: 614 RNLE 617
Score = 663 (238.4 bits), Expect = 3.5e-64, P = 3.5e-64
Identities = 145/396 (36%), Positives = 225/396 (56%)
Query: 540 PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQ 599
P KN Y E E+ N+TP+Q+ R K N + VS P P P +SF
Sbjct: 211 PPFEKNFYNEHEEITNLTPQQLIDLRHKLN-LRVSGAA--------P----PRPGSSFAH 257
Query: 600 AFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH 659
F +++ Q+ +T P+PIQ Q P+ +SG DMIGIA+TG+GKT AF+ P LIH
Sbjct: 258 -FGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHI- 315
Query: 660 LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKELEPQLEKIRE 718
+ + GP +++ PTREL QI E + L++V VYGG + Q + ++E
Sbjct: 316 MDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQE 375
Query: 719 GCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTV 778
G I++ TPGRL D V + + +L+ VS++V DEADRM D+GFE Q+ + ++ P+RQT+
Sbjct: 376 GAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTL 435
Query: 779 MTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNM 838
+ SAT+ K ++++A+ +++P++V G + A VTQ + IL K +WL
Sbjct: 436 LFSATFRKKIEKLARDILIDPIRVVQGDIG-EANEDVTQIVEILHSGSKWNWLTRRLVEF 494
Query: 839 DEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVA 898
V++F+ +KA+ ++++L + L+GD+ Q +R + D + VA
Sbjct: 495 TSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVA 553
Query: 899 TDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
TDVA+RGLD+P + VINYD I+ + HR+GRTG
Sbjct: 554 TDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTG 589
>ASPGD|ASPL0000055571 [details] [associations]
symbol:AN1266 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0003676 EMBL:AACD01000017
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
OMA:SVVAPEI HOGENOM:HOG000007229 OrthoDB:EOG40CMR1
RefSeq:XP_658870.1 ProteinModelPortal:Q5BDW4
EnsemblFungi:CADANIAT00001356 GeneID:2877043 KEGG:ani:AN1266.2
Uniprot:Q5BDW4
Length = 1173
Score = 723 (259.6 bits), Expect = 1.0e-70, P = 1.0e-70
Identities = 162/444 (36%), Positives = 261/444 (58%)
Query: 12 ERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIP 71
+ +K EP + Y E ++A M+ E+ R + + I V G +D +P
Sbjct: 491 DHNKVEYEP-FRRKFYTEPSDLAQMSEEEAANLRLELDGIKVR-----G-LD------VP 537
Query: 72 NPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFL 131
PV + Q + L ++ L F + + IQAQA P +MSG D+IG+A+TG+GKT AFL
Sbjct: 538 KPVQKWSQCGLGI-QTLDVIDKLGFASLTSIQAQAIPAIMSGRDVIGVAKTGSGKTMAFL 596
Query: 132 LPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK-IDYKGLKAVCVYGGKEIE 190
+P H Q P+ GP L+M PTRELATQI ++ + L+AVC YGG I+
Sbjct: 597 IPMFRHIKDQR-PLENMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIK 655
Query: 191 PQLEKIREGCHILIATPGRLNDFVSRAS---IDLKAVSFVVLDEADRMLDLGFEPQINKT 247
Q+ +++ G I++ TPGR+ D ++ + +L+ V++VVLDEADRM D+GFEPQ+ K
Sbjct: 656 DQIAELKRGAEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKI 715
Query: 248 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEK 307
+ P+RQTV+ SAT+ ++++ +A+K + P+++ VG + A +TQ + + +E++K
Sbjct: 716 LSNVRPDRQTVLFSATFPRNMEALARKTLTKPIEIVVGGRSVVAPE-ITQIVEVCNEEKK 774
Query: 308 KDWLMEFFDNM---DEERD-KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREI 363
L+E N+ DE D + ++F+ R+ + + +L + S++G Q DR+
Sbjct: 775 FVRLLELLGNLYSTDENEDARSLIFVDRQEAADTLLRELMRKGYPCMSIHGGKDQIDRDS 834
Query: 364 ALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESI 423
+ED +G + +AT VA+RGLDV L V+NYD P+H+E+YVHR GRTGRAG +G ++
Sbjct: 835 TIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAV 894
Query: 424 TLMTRKDWSHAHEIIPILEEGGHE 447
T +T ++ +I L++ G E
Sbjct: 895 TFLTEDQERYSVDIAKALKQSGQE 918
Score = 668 (240.2 bits), Expect = 9.7e-65, P = 9.7e-65
Identities = 151/411 (36%), Positives = 242/411 (58%)
Query: 532 ERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIP 591
+ +K EP + Y E ++A M+ E+ R + + I V G +D +P
Sbjct: 491 DHNKVEYEP-FRRKFYTEPSDLAQMSEEEAANLRLELDGIKVR-----G-LD------VP 537
Query: 592 NPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFL 651
PV + Q + L ++ L F + + IQAQA P +MSG D+IG+A+TG+GKT AFL
Sbjct: 538 KPVQKWSQCGLGI-QTLDVIDKLGFASLTSIQAQAIPAIMSGRDVIGVAKTGSGKTMAFL 596
Query: 652 LPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK-IDYKGLKAVCVYGGKELE 710
+P H Q P+ GP L+M PTRELATQI ++ + L+AVC YGG ++
Sbjct: 597 IPMFRHIKDQR-PLENMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIK 655
Query: 711 PQLEKIREGCHILIATPGRLNDFVSRAS---IDLKAVSFVVLDEADRMLDLGFEPQINKT 767
Q+ +++ G I++ TPGR+ D ++ + +L+ V++VVLDEADRM D+GFEPQ+ K
Sbjct: 656 DQIAELKRGAEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKI 715
Query: 768 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEK 827
+ P+RQTV+ SAT+ ++++ +A+K + P+++ VG + A +TQ + + +E++K
Sbjct: 716 LSNVRPDRQTVLFSATFPRNMEALARKTLTKPIEIVVGGRSVVAPE-ITQIVEVCNEEKK 774
Query: 828 KDWLMEFFDNM---DEERD-KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREI 883
L+E N+ DE D + ++F+ R+ + + +L + S++G Q DR+
Sbjct: 775 FVRLLELLGNLYSTDENEDARSLIFVDRQEAADTLLRELMRKGYPCMSIHGGKDQIDRDS 834
Query: 884 ALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
+ED +G + +AT VA+RGLDV L V+NYD P+H+E+YVHR GRTG
Sbjct: 835 TIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTG 885
>ZFIN|ZDB-GENE-980526-150 [details] [associations]
symbol:pl10 "pl10" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-980526-150 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K11594 HOVERGEN:HBG015893
EMBL:BC059794 IPI:IPI00483337 RefSeq:NP_571016.2 UniGene:Dr.75779
ProteinModelPortal:Q6PBB2 SMR:Q6PBB2 GeneID:30116 KEGG:dre:30116
CTD:30116 InParanoid:Q6PBB2 NextBio:20806595 ArrayExpress:Q6PBB2
Uniprot:Q6PBB2
Length = 688
Score = 574 (207.1 bits), Expect = 1.4e-70, Sum P(2) = 1.4e-70
Identities = 128/305 (41%), Positives = 188/305 (61%)
Query: 151 PSVLVMAPTRELATQIEREVNKIDYKGLKAVCV-YGGKEIEPQLEKIREGCHILIATPGR 209
P LV+APTRELA QI E K Y+ CV YGG +I Q+ + GCH+L+ATPGR
Sbjct: 299 PISLVLAPTRELALQIYDEARKFSYRSHVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 358
Query: 210 LNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT--SIYINPN--RQTVMTSATWN 265
L D + R I L +++VLDEADRMLD+GFEPQI + + P RQT+M SAT+
Sbjct: 359 LLDMMERGKIGLDYCNYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGLRQTMMFSATFP 418
Query: 266 KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKV 325
K++Q +A+ ++ + + + VG + + + +TQK++ ++E++K+ +L++ N +
Sbjct: 419 KEIQILARDFLEDYIFLAVGRVG-STSENITQKVVWVEENDKRSFLLDLL-NATGKDSLT 476
Query: 326 MVFMGRKASVSAMSSDLACQYRK--SC-SLYGDLSQEDREIALEDITSGYARICVATDVA 382
+VF+ K A+ L YR+ +C S++GD SQ DRE AL SG I VAT VA
Sbjct: 477 LVFVETKKGADALEDFL---YREGYACTSIHGDRSQRDREEALHQFRSGRCPILVATAVA 533
Query: 383 SRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILE 442
+RGLD+ ++ HVIN+D PS IEEYVHR+GRTGR G G + + K+ + +++ IL
Sbjct: 534 ARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDKNGNITKDLLDILV 593
Query: 443 EGGHE 447
E E
Sbjct: 594 EAKQE 598
Score = 541 (195.5 bits), Expect = 7.5e-67, Sum P(2) = 7.5e-67
Identities = 119/272 (43%), Positives = 173/272 (63%)
Query: 671 PSVLVMAPTRELATQIEREVNKIDYKGLKAVCV-YGGKELEPQLEKIREGCHILIATPGR 729
P LV+APTRELA QI E K Y+ CV YGG ++ Q+ + GCH+L+ATPGR
Sbjct: 299 PISLVLAPTRELALQIYDEARKFSYRSHVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 358
Query: 730 LNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT--SIYINPN--RQTVMTSATWN 785
L D + R I L +++VLDEADRMLD+GFEPQI + + P RQT+M SAT+
Sbjct: 359 LLDMMERGKIGLDYCNYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGLRQTMMFSATFP 418
Query: 786 KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKV 845
K++Q +A+ ++ + + + VG + + + +TQK++ ++E++K+ +L++ N +
Sbjct: 419 KEIQILARDFLEDYIFLAVGRVG-STSENITQKVVWVEENDKRSFLLDLL-NATGKDSLT 476
Query: 846 MVFMGRKASVSAMSSDLACQYRK--SC-SLYGDLSQEDREIALEDITSGYARICVATDVA 902
+VF+ K A+ L YR+ +C S++GD SQ DRE AL SG I VAT VA
Sbjct: 477 LVFVETKKGADALEDFL---YREGYACTSIHGDRSQRDREEALHQFRSGRCPILVATAVA 533
Query: 903 SRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
+RGLD+ ++ HVIN+D PS IEEYVHR+GRTG
Sbjct: 534 ARGLDISNVKHVINFDLPSDIEEYVHRIGRTG 565
Score = 170 (64.9 bits), Expect = 1.4e-70, Sum P(2) = 1.4e-70
Identities = 53/133 (39%), Positives = 66/133 (49%)
Query: 71 PNPVTSFKQAFQHYPEILRQLENLS-FTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 129
P P+ F EI+ NLS +T P+P+Q A PI+ S D++ AQTG+GKT A
Sbjct: 204 PQPIDRFHDL--EMGEIIMGNINLSRYTRPTPVQKHAIPIIKSKRDLMACAQTGSGKTAA 261
Query: 130 FLLPAL--IHTH-----LQTTPISERAG---------PSVLVMAPTRELATQIEREVNKI 173
FLLP L I+T LQ S + P LV+APTRELA QI E K
Sbjct: 262 FLLPVLSQIYTDGPGEALQAAKNSAQENGKYGRRKQYPISLVLAPTRELALQIYDEARKF 321
Query: 174 DYKGLKAVCVYGG 186
Y+ CV G
Sbjct: 322 SYRSHVRPCVVYG 334
Score = 170 (64.9 bits), Expect = 7.5e-67, Sum P(2) = 7.5e-67
Identities = 53/133 (39%), Positives = 66/133 (49%)
Query: 591 PNPVTSFKQAFQHYPEILRQLENLS-FTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 649
P P+ F EI+ NLS +T P+P+Q A PI+ S D++ AQTG+GKT A
Sbjct: 204 PQPIDRFHDL--EMGEIIMGNINLSRYTRPTPVQKHAIPIIKSKRDLMACAQTGSGKTAA 261
Query: 650 FLLPAL--IHTH-----LQTTPISERAG---------PSVLVMAPTRELATQIEREVNKI 693
FLLP L I+T LQ S + P LV+APTRELA QI E K
Sbjct: 262 FLLPVLSQIYTDGPGEALQAAKNSAQENGKYGRRKQYPISLVLAPTRELALQIYDEARKF 321
Query: 694 DYKGLKAVCVYGG 706
Y+ CV G
Sbjct: 322 SYRSHVRPCVVYG 334
Score = 47 (21.6 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 37/155 (23%), Positives = 59/155 (38%)
Query: 605 PEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTT- 663
P+ LRQ S T P IQ A L D I +A G T + ++
Sbjct: 404 PKGLRQTMMFSATFPKEIQILARDFL---EDYIFLAVGRVGSTSENITQKVVWVEENDKR 460
Query: 664 ----PISERAGPS--VLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGK---ELEPQLE 714
+ G LV T++ A +E + + +G ++G + + E L
Sbjct: 461 SFLLDLLNATGKDSLTLVFVETKKGADALEDFLYR---EGYACTSIHGDRSQRDREEALH 517
Query: 715 KIREG-CHILIATPGRLNDFVSRASIDLKAVSFVV 748
+ R G C IL+AT V+ +D+ V V+
Sbjct: 518 QFRSGRCPILVATA------VAARGLDISNVKHVI 546
>TAIR|locus:2065215 [details] [associations]
symbol:AT2G47330 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003723 EMBL:AC002337 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 UniGene:At.12226 UniGene:At.25582
HOGENOM:HOG000268793 KO:K12835 EMBL:AY057700 EMBL:AY124871
IPI:IPI00516775 PIR:H84913 RefSeq:NP_566099.1
ProteinModelPortal:O22907 SMR:O22907 STRING:O22907 PaxDb:O22907
PRIDE:O22907 EnsemblPlants:AT2G47330.1 GeneID:819346
KEGG:ath:AT2G47330 GeneFarm:942 TAIR:At2g47330 InParanoid:O22907
OMA:QEYANLM PhylomeDB:O22907 ProtClustDB:CLSN2688982
Genevestigator:O22907 GermOnline:AT2G47330 Uniprot:O22907
Length = 760
Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
Identities = 161/430 (37%), Positives = 251/430 (58%)
Query: 19 EPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFK 78
EP I K+ Y+E ++ MT ++ +R++ I VS F + PV +F+
Sbjct: 186 EP-INKDFYEELESISGMTEQETTDYRQRLG-IRVS------------GFDVHRPVKTFE 231
Query: 79 QAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHT 138
+I+ ++ ++ P+ IQ QA PI++SG D+IGIA+TG+GKT AF+LP ++H
Sbjct: 232 DC-GFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHI 290
Query: 139 HLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEIEPQLEKIR 197
+ + GP ++ APTRELA QI E K GL+ VYGG Q ++++
Sbjct: 291 -MDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELK 349
Query: 198 EGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQT 257
GC I++ATPGRL D + ++ + S++VLDEADRM DLGFEPQ+ I P+RQT
Sbjct: 350 AGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQT 409
Query: 258 VMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDED-EKKDWLMEFFD 316
++ SAT V+++A++ + +P++V VG + +A +TQ + ++ D EK WL+E
Sbjct: 410 LLFSATMPWKVEKLAREILSDPIRVTVGEVGMA-NEDITQVVNVIPSDAEKLPWLLEKLP 468
Query: 317 NMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARIC 376
M +E D V+VF +KA+V + + L K +L+GD Q R L+ SG +
Sbjct: 469 GMIDEGD-VLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVL 527
Query: 377 VATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAG-KSGESITLMTRKDWSHAH 435
+ATDVA+RGLD+ L V+NYD ++ +VHR+GRTGRAG + G + TL+T+++ A
Sbjct: 528 IATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQREARFAG 587
Query: 436 EIIPILEEGG 445
E++ L G
Sbjct: 588 ELVNSLVAAG 597
Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
Identities = 150/398 (37%), Positives = 232/398 (58%)
Query: 539 EPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFK 598
EP I K+ Y+E ++ MT ++ +R++ I VS F + PV +F+
Sbjct: 186 EP-INKDFYEELESISGMTEQETTDYRQRLG-IRVS------------GFDVHRPVKTFE 231
Query: 599 QAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHT 658
+I+ ++ ++ P+ IQ QA PI++SG D+IGIA+TG+GKT AF+LP ++H
Sbjct: 232 DC-GFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHI 290
Query: 659 HLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKELEPQLEKIR 717
+ + GP ++ APTRELA QI E K GL+ VYGG Q ++++
Sbjct: 291 -MDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELK 349
Query: 718 EGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQT 777
GC I++ATPGRL D + ++ + S++VLDEADRM DLGFEPQ+ I P+RQT
Sbjct: 350 AGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQT 409
Query: 778 VMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDED-EKKDWLMEFFD 836
++ SAT V+++A++ + +P++V VG + +A +TQ + ++ D EK WL+E
Sbjct: 410 LLFSATMPWKVEKLAREILSDPIRVTVGEVGMA-NEDITQVVNVIPSDAEKLPWLLEKLP 468
Query: 837 NMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARIC 896
M +E D V+VF +KA+V + + L K +L+GD Q R L+ SG +
Sbjct: 469 GMIDEGD-VLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVL 527
Query: 897 VATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
+ATDVA+RGLD+ L V+NYD ++ +VHR+GRTG
Sbjct: 528 IATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTG 565
>MGI|MGI:1919297 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919297
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0016607 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AL604045 HSSP:P09052
CTD:11325 HOGENOM:HOG000268793 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 OMA:QGVNNTA ChiTaRS:DDX42 EMBL:AK007805
EMBL:AK049311 EMBL:AK169816 EMBL:AK171730 EMBL:BC043036
IPI:IPI00329839 IPI:IPI00830514 RefSeq:NP_082350.3 UniGene:Mm.41367
ProteinModelPortal:Q810A7 SMR:Q810A7 IntAct:Q810A7 STRING:Q810A7
PhosphoSite:Q810A7 PaxDb:Q810A7 PRIDE:Q810A7
Ensembl:ENSMUST00000021046 GeneID:72047 KEGG:mmu:72047
UCSC:uc007lyk.2 UCSC:uc007lyl.2 GeneTree:ENSGT00610000086076
InParanoid:Q810A7 NextBio:335308 Bgee:Q810A7 CleanEx:MM_DDX42
Genevestigator:Q810A7 Uniprot:Q810A7
Length = 929
Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
Identities = 158/425 (37%), Positives = 244/425 (57%)
Query: 20 PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQ 79
P KN Y E E+ N+TP+Q+ R K N + VS P P P +SF
Sbjct: 211 PPFEKNFYNEHEEITNLTPQQLIDLRHKLN-LRVSGAA--------P----PRPGSSFAH 257
Query: 80 AFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH 139
F +++ Q+ +T P+PIQ Q P+ +SG DMIGIA+TG+GKT AF+ P LIH
Sbjct: 258 -FGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHI- 315
Query: 140 LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEIEPQLEKIRE 198
+ + GP +++ PTREL QI E + L++V VYGG + Q + ++E
Sbjct: 316 MDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQE 375
Query: 199 GCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTV 258
G I++ TPGRL D V + + +L+ VS++V DEADRM D+GFE Q+ + ++ P+RQT+
Sbjct: 376 GAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTL 435
Query: 259 MTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKK-DWLMEFFDN 317
+ SAT+ K ++++A+ +++P++V G + A VTQ + IL K +WL
Sbjct: 436 LFSATFRKKIEKLARDILIDPIRVVQGDIG-EANEDVTQIVEILHSGPSKWNWLTRRLVE 494
Query: 318 MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICV 377
V++F+ +KA+ ++S+L + L+GD+ Q +R + D + V
Sbjct: 495 FTSS-GSVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLV 553
Query: 378 ATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEI 437
ATDVA+RGLD+P + VINYD I+ + HR+GRTGRAG+ G + TL+T KD + A ++
Sbjct: 554 ATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDL 613
Query: 438 IPILE 442
+ LE
Sbjct: 614 VRNLE 618
Score = 659 (237.0 bits), Expect = 1.3e-63, P = 1.3e-63
Identities = 146/397 (36%), Positives = 225/397 (56%)
Query: 540 PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQ 599
P KN Y E E+ N+TP+Q+ R K N + VS P P P +SF
Sbjct: 211 PPFEKNFYNEHEEITNLTPQQLIDLRHKLN-LRVSGAA--------P----PRPGSSFAH 257
Query: 600 AFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH 659
F +++ Q+ +T P+PIQ Q P+ +SG DMIGIA+TG+GKT AF+ P LIH
Sbjct: 258 -FGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHI- 315
Query: 660 LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKELEPQLEKIRE 718
+ + GP +++ PTREL QI E + L++V VYGG + Q + ++E
Sbjct: 316 MDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQE 375
Query: 719 GCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTV 778
G I++ TPGRL D V + + +L+ VS++V DEADRM D+GFE Q+ + ++ P+RQT+
Sbjct: 376 GAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTL 435
Query: 779 MTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKK-DWLMEFFDN 837
+ SAT+ K ++++A+ +++P++V G + A VTQ + IL K +WL
Sbjct: 436 LFSATFRKKIEKLARDILIDPIRVVQGDIG-EANEDVTQIVEILHSGPSKWNWLTRRLVE 494
Query: 838 MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICV 897
V++F+ +KA+ ++S+L + L+GD+ Q +R + D + V
Sbjct: 495 FTSS-GSVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLV 553
Query: 898 ATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
ATDVA+RGLD+P + VINYD I+ + HR+GRTG
Sbjct: 554 ATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTG 590
>POMBASE|SPCC1795.11 [details] [associations]
symbol:sum3 "translation initiation RNA helicase Sum3"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=IMP] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0007346
"regulation of mitotic cell cycle" evidence=IMP] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0031047
"gene silencing by RNA" evidence=IDA] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IGI] [GO:0071470
"cellular response to osmotic stress" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC1795.11 GO:GO:0005829 GO:GO:0005524
GO:GO:0007346 GO:GO:0051301 GO:GO:0007067 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0071470 GO:GO:0010628 GO:GO:0031047
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0031137 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0002183 HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4
OMA:KYERGGN EMBL:AF025536 EMBL:AF084222 EMBL:AB012389 EMBL:AJ237697
EMBL:AB027871 PIR:T43543 RefSeq:NP_588033.1
ProteinModelPortal:O13370 SMR:O13370 IntAct:O13370
MINT:MINT-4666622 STRING:O13370 PRIDE:O13370
EnsemblFungi:SPCC1795.11.1 GeneID:2538689 KEGG:spo:SPCC1795.11
NextBio:20799875 Uniprot:O13370
Length = 636
Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
Identities = 164/425 (38%), Positives = 249/425 (58%)
Query: 46 KKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQ 105
+K +DI V V S G I+ +F P P+ S H +L+ ++ +T P+P+Q
Sbjct: 151 EKYDDIPVEV--SGGDIEPVNEFTSP-PLNS------H---LLQNIKLSGYTQPTPVQKN 198
Query: 106 AWPILMSGHDMIGIAQTGTGKTFAFLLPAL---IHTHLQTTPISERAG---------PSV 153
+ PI+ SG D++ AQTG+GKT FL P L P+ + AG P+
Sbjct: 199 SIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTT 258
Query: 154 LVMAPTRELATQIEREVNKIDYKGLKAVC-VYGGKEIEPQLEKIREGCHILIATPGRLND 212
L++APTREL QI E K Y+ C VYGG +I Q+ +I +GC +L ATPGRL D
Sbjct: 259 LILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVD 318
Query: 213 FVSRASIDLKAVSFVVLDEADRMLDLGFEPQINK----TSIYINPNRQTVMTSATWNKDV 268
+ R I L + F+VLDEADRMLD+GFEPQI + RQT+M SAT+ +D+
Sbjct: 319 LIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDI 378
Query: 269 QRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVF 328
Q +A+ ++ + V ++VG + + + +TQK++ +++ EK+ +L++ + E ++F
Sbjct: 379 QLLARDFLKDYVFLSVGRVG-STSENITQKVVHVEDSEKRSYLLDILHTLPPE-GLTLIF 436
Query: 329 MGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDV 388
+ K ++ L + S++GD +Q +RE ALE SG I VAT VASRGLD+
Sbjct: 437 VETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDI 496
Query: 389 PDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEGGHE- 447
P++THVINYD P+ I++YVHR+GRTGRAG +G+++ R + A E+I +L+E E
Sbjct: 497 PNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFNRNNKGIAKELIELLQEANQEC 556
Query: 448 -SYMI 451
S++I
Sbjct: 557 PSFLI 561
Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
Identities = 150/386 (38%), Positives = 226/386 (58%)
Query: 566 KKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQ 625
+K +DI V V S G I+ +F P P+ S H +L+ ++ +T P+P+Q
Sbjct: 151 EKYDDIPVEV--SGGDIEPVNEFTSP-PLNS------H---LLQNIKLSGYTQPTPVQKN 198
Query: 626 AWPILMSGHDMIGIAQTGTGKTFAFLLPAL---IHTHLQTTPISERAG---------PSV 673
+ PI+ SG D++ AQTG+GKT FL P L P+ + AG P+
Sbjct: 199 SIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTT 258
Query: 674 LVMAPTRELATQIEREVNKIDYKGLKAVC-VYGGKELEPQLEKIREGCHILIATPGRLND 732
L++APTREL QI E K Y+ C VYGG ++ Q+ +I +GC +L ATPGRL D
Sbjct: 259 LILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVD 318
Query: 733 FVSRASIDLKAVSFVVLDEADRMLDLGFEPQINK----TSIYINPNRQTVMTSATWNKDV 788
+ R I L + F+VLDEADRMLD+GFEPQI + RQT+M SAT+ +D+
Sbjct: 319 LIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDI 378
Query: 789 QRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVF 848
Q +A+ ++ + V ++VG + + + +TQK++ +++ EK+ +L++ + E ++F
Sbjct: 379 QLLARDFLKDYVFLSVGRVG-STSENITQKVVHVEDSEKRSYLLDILHTLPPE-GLTLIF 436
Query: 849 MGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDV 908
+ K ++ L + S++GD +Q +RE ALE SG I VAT VASRGLD+
Sbjct: 437 VETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDI 496
Query: 909 PDLTHVINYDFPSHIEEYVHRVGRTG 934
P++THVINYD P+ I++YVHR+GRTG
Sbjct: 497 PNVTHVINYDLPTDIDDYVHRIGRTG 522
>TAIR|locus:2076351 [details] [associations]
symbol:AT3G58510 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005777 "peroxisome"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730
GO:GO:0005777 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL137082 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K11594
EMBL:AY088091 EMBL:AY062446 EMBL:AY114637 EMBL:AJ010463
IPI:IPI00521485 PIR:T45671 PIR:T51742 RefSeq:NP_001030884.1
RefSeq:NP_567067.1 RefSeq:NP_974455.1 UniGene:At.22801
UniGene:At.70259 ProteinModelPortal:Q8LA13 SMR:Q8LA13 IntAct:Q8LA13
STRING:Q8LA13 PaxDb:Q8LA13 PRIDE:Q8LA13 EnsemblPlants:AT3G58510.1
EnsemblPlants:AT3G58510.2 EnsemblPlants:AT3G58510.3 GeneID:825020
KEGG:ath:AT3G58510 GeneFarm:927 TAIR:At3g58510 InParanoid:Q8LA13
OMA:FCAPDEA PhylomeDB:Q8LA13 ProtClustDB:CLSN2683925
Genevestigator:Q8LA13 GermOnline:AT3G58510 Uniprot:Q8LA13
Length = 612
Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
Identities = 160/445 (35%), Positives = 247/445 (55%)
Query: 16 WAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVT 75
W R + + N + +D E+ + EQ + + V TS G + P PV
Sbjct: 101 WDRREREV-NPFGDDAELEPVFTEQENTGINFDAYEDIPVETSGGDV--------PPPVN 151
Query: 76 SFKQAFQHYPEILR-QLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPA 134
+F + L + + P+P+Q A PIL++ D++ AQTG+GKT AF P
Sbjct: 152 TFADI--DLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPI 209
Query: 135 LI----HTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEI 189
+ H++ S P ++++PTRELA QI E K Y+ G+K V YGG I
Sbjct: 210 ISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPI 269
Query: 190 EPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT-- 247
QL ++ GC IL+ATPGRLND + RA + ++ + F+ LDEADRMLD+GFEPQI K
Sbjct: 270 HQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVE 329
Query: 248 SIYINPN--RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDED 305
+ + P RQT++ SAT+ +QR+A +M N + + VG + ++T +TQ++ + E
Sbjct: 330 QMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVG-SSTDLITQRVEFVQES 388
Query: 306 EKKDWLMEFFDNMDEERDK---VMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDRE 362
+K+ LM+ E +DK +VF+ K + + L + S++GD +Q++RE
Sbjct: 389 DKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQERE 448
Query: 363 IALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGES 422
+AL +G I VATDVA+RGLD+P + HV+N+D P+ I++YVHR+GRTGRAGKSG +
Sbjct: 449 VALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIA 508
Query: 423 ITLMTRKDWSHAHEIIPILEEGGHE 447
+ A + +++E E
Sbjct: 509 TAFFNENNAQLARSLAELMQEANQE 533
Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
Identities = 150/412 (36%), Positives = 232/412 (56%)
Query: 536 WAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVT 595
W R + + N + +D E+ + EQ + + V TS G + P PV
Sbjct: 101 WDRREREV-NPFGDDAELEPVFTEQENTGINFDAYEDIPVETSGGDV--------PPPVN 151
Query: 596 SFKQAFQHYPEILR-QLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPA 654
+F + L + + P+P+Q A PIL++ D++ AQTG+GKT AF P
Sbjct: 152 TFADI--DLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPI 209
Query: 655 LI----HTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEL 709
+ H++ S P ++++PTRELA QI E K Y+ G+K V YGG +
Sbjct: 210 ISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPI 269
Query: 710 EPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT-- 767
QL ++ GC IL+ATPGRLND + RA + ++ + F+ LDEADRMLD+GFEPQI K
Sbjct: 270 HQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVE 329
Query: 768 SIYINPN--RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDED 825
+ + P RQT++ SAT+ +QR+A +M N + + VG + ++T +TQ++ + E
Sbjct: 330 QMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVG-SSTDLITQRVEFVQES 388
Query: 826 EKKDWLMEFFDNMDEERDK---VMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDRE 882
+K+ LM+ E +DK +VF+ K + + L + S++GD +Q++RE
Sbjct: 389 DKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQERE 448
Query: 883 IALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
+AL +G I VATDVA+RGLD+P + HV+N+D P+ I++YVHR+GRTG
Sbjct: 449 VALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTG 500
>UNIPROTKB|E2RFF1 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AAEX03006359
Ensembl:ENSCAFT00000020366 Uniprot:E2RFF1
Length = 933
Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
Identities = 157/425 (36%), Positives = 244/425 (57%)
Query: 20 PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQ 79
P KN Y E E+ N+TP+Q+ R K N + VS P P P +SF
Sbjct: 211 PPFEKNFYNEHEEITNLTPQQLIDLRHKLN-LRVSGAA--------P----PRPGSSFAH 257
Query: 80 AFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH 139
F +++ Q+ +T P+PIQ Q P+ +SG DMIGIA+TG+GKT AF+ P LIH
Sbjct: 258 -FGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHI- 315
Query: 140 LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEIEPQLEKIRE 198
+ + GP +++ PTREL QI E + L++V VYGG + Q + ++E
Sbjct: 316 MDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQE 375
Query: 199 GCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTV 258
G I++ TPGRL D V + + +L+ VS++V DEADRM D+GFE Q+ + ++ P+RQT+
Sbjct: 376 GAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTL 435
Query: 259 MTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKK-DWLMEFFDN 317
+ SAT+ K ++++A+ +++P++V G + A VTQ + IL K +WL
Sbjct: 436 LFSATFRKKIEKLARDILIDPIRVVQGDIG-EANEDVTQIVEILHSGPSKWNWLTRRLVE 494
Query: 318 MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICV 377
V++F+ +KA+ ++++L + L+GD+ Q +R + D + V
Sbjct: 495 FTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLV 553
Query: 378 ATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEI 437
ATDVA+RGLD+P + VINYD I+ + HR+GRTGRAG+ G + TL+T KD + A ++
Sbjct: 554 ATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDL 613
Query: 438 IPILE 442
+ LE
Sbjct: 614 VRNLE 618
Score = 656 (236.0 bits), Expect = 4.4e-63, P = 4.4e-63
Identities = 145/397 (36%), Positives = 225/397 (56%)
Query: 540 PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQ 599
P KN Y E E+ N+TP+Q+ R K N + VS P P P +SF
Sbjct: 211 PPFEKNFYNEHEEITNLTPQQLIDLRHKLN-LRVSGAA--------P----PRPGSSFAH 257
Query: 600 AFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH 659
F +++ Q+ +T P+PIQ Q P+ +SG DMIGIA+TG+GKT AF+ P LIH
Sbjct: 258 -FGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHI- 315
Query: 660 LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKELEPQLEKIRE 718
+ + GP +++ PTREL QI E + L++V VYGG + Q + ++E
Sbjct: 316 MDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQE 375
Query: 719 GCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTV 778
G I++ TPGRL D V + + +L+ VS++V DEADRM D+GFE Q+ + ++ P+RQT+
Sbjct: 376 GAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTL 435
Query: 779 MTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKK-DWLMEFFDN 837
+ SAT+ K ++++A+ +++P++V G + A VTQ + IL K +WL
Sbjct: 436 LFSATFRKKIEKLARDILIDPIRVVQGDIG-EANEDVTQIVEILHSGPSKWNWLTRRLVE 494
Query: 838 MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICV 897
V++F+ +KA+ ++++L + L+GD+ Q +R + D + V
Sbjct: 495 FTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLV 553
Query: 898 ATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
ATDVA+RGLD+P + VINYD I+ + HR+GRTG
Sbjct: 554 ATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTG 590
>UNIPROTKB|Q86XP3 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008104 "protein
localization" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AF083255 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
EMBL:CH471109 GO:GO:0015030 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 CTD:11325 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 EMBL:AB036090 EMBL:AK292908 EMBL:AC015651
EMBL:BC008208 EMBL:BC015505 EMBL:BC078667 EMBL:BC093081
EMBL:AL050096 EMBL:BK000566 IPI:IPI00409671 IPI:IPI00829889
PIR:T08745 RefSeq:NP_031398.2 RefSeq:NP_987095.1 UniGene:Hs.702010
ProteinModelPortal:Q86XP3 SMR:Q86XP3 IntAct:Q86XP3
MINT:MINT-1427725 STRING:Q86XP3 PhosphoSite:Q86XP3 DMDM:74750541
PaxDb:Q86XP3 PRIDE:Q86XP3 Ensembl:ENST00000359353
Ensembl:ENST00000389924 Ensembl:ENST00000457800
Ensembl:ENST00000578681 Ensembl:ENST00000583590 GeneID:11325
KEGG:hsa:11325 UCSC:uc002jbu.3 GeneCards:GC17P061851
HGNC:HGNC:18676 HPA:HPA023447 HPA:HPA023571 HPA:HPA025941
MIM:613369 neXtProt:NX_Q86XP3 PharmGKB:PA134875761
InParanoid:Q86XP3 OMA:QGVNNTA ChiTaRS:DDX42 GenomeRNAi:11325
NextBio:43019 ArrayExpress:Q86XP3 Bgee:Q86XP3 CleanEx:HS_DDX42
Genevestigator:Q86XP3 Uniprot:Q86XP3
Length = 938
Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
Identities = 157/425 (36%), Positives = 244/425 (57%)
Query: 20 PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQ 79
P KN Y E E+ N+TP+Q+ R K N + VS P P P +SF
Sbjct: 211 PPFEKNFYNEHEEITNLTPQQLIDLRHKLN-LRVSGAA--------P----PRPGSSFAH 257
Query: 80 AFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH 139
F +++ Q+ +T P+PIQ Q P+ +SG DMIGIA+TG+GKT AF+ P LIH
Sbjct: 258 -FGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHI- 315
Query: 140 LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEIEPQLEKIRE 198
+ + GP +++ PTREL QI E + L++V VYGG + Q + ++E
Sbjct: 316 MDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQE 375
Query: 199 GCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTV 258
G I++ TPGRL D V + + +L+ VS++V DEADRM D+GFE Q+ + ++ P+RQT+
Sbjct: 376 GAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTL 435
Query: 259 MTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKK-DWLMEFFDN 317
+ SAT+ K ++++A+ +++P++V G + A VTQ + IL K +WL
Sbjct: 436 LFSATFRKKIEKLARDILIDPIRVVQGDIG-EANEDVTQIVEILHSGPSKWNWLTRRLVE 494
Query: 318 MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICV 377
V++F+ +KA+ ++++L + L+GD+ Q +R + D + V
Sbjct: 495 FTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLV 553
Query: 378 ATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEI 437
ATDVA+RGLD+P + VINYD I+ + HR+GRTGRAG+ G + TL+T KD + A ++
Sbjct: 554 ATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDL 613
Query: 438 IPILE 442
+ LE
Sbjct: 614 VRNLE 618
Score = 656 (236.0 bits), Expect = 4.9e-63, P = 4.9e-63
Identities = 145/397 (36%), Positives = 225/397 (56%)
Query: 540 PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQ 599
P KN Y E E+ N+TP+Q+ R K N + VS P P P +SF
Sbjct: 211 PPFEKNFYNEHEEITNLTPQQLIDLRHKLN-LRVSGAA--------P----PRPGSSFAH 257
Query: 600 AFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH 659
F +++ Q+ +T P+PIQ Q P+ +SG DMIGIA+TG+GKT AF+ P LIH
Sbjct: 258 -FGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHI- 315
Query: 660 LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKELEPQLEKIRE 718
+ + GP +++ PTREL QI E + L++V VYGG + Q + ++E
Sbjct: 316 MDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQE 375
Query: 719 GCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTV 778
G I++ TPGRL D V + + +L+ VS++V DEADRM D+GFE Q+ + ++ P+RQT+
Sbjct: 376 GAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTL 435
Query: 779 MTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKK-DWLMEFFDN 837
+ SAT+ K ++++A+ +++P++V G + A VTQ + IL K +WL
Sbjct: 436 LFSATFRKKIEKLARDILIDPIRVVQGDIG-EANEDVTQIVEILHSGPSKWNWLTRRLVE 494
Query: 838 MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICV 897
V++F+ +KA+ ++++L + L+GD+ Q +R + D + V
Sbjct: 495 FTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLV 553
Query: 898 ATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
ATDVA+RGLD+P + VINYD I+ + HR+GRTG
Sbjct: 554 ATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTG 590
>WB|WBGene00018776 [details] [associations]
symbol:F53H1.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 GO:GO:0040018 GO:GO:0003676
GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 GeneTree:ENSGT00610000086076 KO:K12811
HOGENOM:HOG000007229 OMA:IEEENKF EMBL:FO081458
RefSeq:NP_001033411.1 ProteinModelPortal:Q965K2 SMR:Q965K2
PaxDb:Q965K2 PRIDE:Q965K2 EnsemblMetazoa:F53H1.1 GeneID:176943
KEGG:cel:CELE_F53H1.1 UCSC:F53H1.1 CTD:176943 WormBase:F53H1.1
InParanoid:Q965K2 NextBio:894678 ArrayExpress:Q965K2 Uniprot:Q965K2
Length = 970
Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
Identities = 167/431 (38%), Positives = 248/431 (57%)
Query: 21 KIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQA 80
K KN Y E E+ MT +V+A+R++ + I+V G ID P P+ ++ Q
Sbjct: 262 KFKKNFYIETEEIRRMTKAEVKAYREELDSITVK-----G-ID------CPKPIKTWAQC 309
Query: 81 FQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHL 140
+ +++ L+ ++ P+ IQAQA P +MSG D+IGIA+TG+GKT AFLLP H L
Sbjct: 310 GVNL-KMMNVLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHI-L 367
Query: 141 QTTPISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEIEPQLEKIREG 199
+ E GP +++APTRELA Q +E NK GLK C YGG I Q+ ++ G
Sbjct: 368 DQPELEEGDGPIAVILAPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKRG 427
Query: 200 CHILIATPGRLNDFVSRAS---IDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQ 256
I++ TPGR+ D ++ S +L+ V+++VLDEADRM D GFEPQI K I P++Q
Sbjct: 428 AEIVVCTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRPDKQ 487
Query: 257 TVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFD 316
TV+ SAT+ + ++ +A+K + PV++ VG + + +TQ +I E +K L+E
Sbjct: 488 TVLFSATFPRHMEALARKVLDKPVEILVGGKSVVCSD-ITQNAVICAEHQKFLKLLELLG 546
Query: 317 NMDEERDKVMVFMGRKASVSAMSSDLA-CQYRKSCSLYGDLSQEDREIALEDITSGYARI 375
EE + VF+ ++ + L Y L+G + Q DR+ ++ D +G ++
Sbjct: 547 MYYEEGSSI-VFVDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKV 605
Query: 376 CVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESIT-LMTRKDWSHA 434
VAT VA+RGLDV +L V+NYD P+H E+YVHRVGRTGRAG+ G + T ++ A
Sbjct: 606 LVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLPEHQEKMA 665
Query: 435 HEIIPILEEGG 445
EI E G
Sbjct: 666 GEICRAFETAG 676
Score = 677 (243.4 bits), Expect = 1.0e-68, Sum P(2) = 1.0e-68
Identities = 156/399 (39%), Positives = 234/399 (58%)
Query: 541 KIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQA 600
K KN Y E E+ MT +V+A+R++ + I+V G ID P P+ ++ Q
Sbjct: 262 KFKKNFYIETEEIRRMTKAEVKAYREELDSITVK-----G-ID------CPKPIKTWAQC 309
Query: 601 FQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHL 660
+ +++ L+ ++ P+ IQAQA P +MSG D+IGIA+TG+GKT AFLLP H L
Sbjct: 310 GVNL-KMMNVLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHI-L 367
Query: 661 QTTPISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKELEPQLEKIREG 719
+ E GP +++APTRELA Q +E NK GLK C YGG + Q+ ++ G
Sbjct: 368 DQPELEEGDGPIAVILAPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKRG 427
Query: 720 CHILIATPGRLNDFVSRAS---IDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQ 776
I++ TPGR+ D ++ S +L+ V+++VLDEADRM D GFEPQI K I P++Q
Sbjct: 428 AEIVVCTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRPDKQ 487
Query: 777 TVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFD 836
TV+ SAT+ + ++ +A+K + PV++ VG + + +TQ +I E +K L+E
Sbjct: 488 TVLFSATFPRHMEALARKVLDKPVEILVGGKSVVCSD-ITQNAVICAEHQKFLKLLELLG 546
Query: 837 NMDEERDKVMVFMGRKASVSAMSSDLA-CQYRKSCSLYGDLSQEDREIALEDITSGYARI 895
EE + VF+ ++ + L Y L+G + Q DR+ ++ D +G ++
Sbjct: 547 MYYEEGSSI-VFVDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKV 605
Query: 896 CVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
VAT VA+RGLDV +L V+NYD P+H E+YVHRVGRTG
Sbjct: 606 LVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRVGRTG 644
Score = 42 (19.8 bits), Expect = 1.0e-68, Sum P(2) = 1.0e-68
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 303 DEDEKKDWLMEFFDNMDE 320
++ EKK W +E D+ DE
Sbjct: 130 EKSEKKPWNLEDEDDEDE 147
>UNIPROTKB|Q5R7D1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9601 "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0008104 "protein
localization" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
CTD:11325 HOVERGEN:HBG081425 KO:K12835 EMBL:CR860187
RefSeq:NP_001126368.1 UniGene:Pab.3212 ProteinModelPortal:Q5R7D1
GeneID:100173349 KEGG:pon:100173349 Uniprot:Q5R7D1
Length = 942
Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
Identities = 157/425 (36%), Positives = 244/425 (57%)
Query: 20 PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQ 79
P KN Y E E+ N+TP+Q+ R K N + VS P P P +SF
Sbjct: 211 PPFEKNFYNEHEEITNLTPQQLIDLRHKLN-LRVSGAA--------P----PRPGSSFAH 257
Query: 80 AFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH 139
F +++ Q+ +T P+PIQ Q P+ +SG DMIGIA+TG+GKT AF+ P LIH
Sbjct: 258 -FGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHI- 315
Query: 140 LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEIEPQLEKIRE 198
+ + GP +++ PTREL QI E + L++V VYGG + Q + ++E
Sbjct: 316 MDQKELEPGDGPIAVIVCPTRELCQQIHAEGKRFGKAYNLRSVAVYGGGSMWEQAKALQE 375
Query: 199 GCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTV 258
G I++ TPGRL D V + + +L+ VS++V DEADRM D+GFE Q+ + ++ P+RQT+
Sbjct: 376 GAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTL 435
Query: 259 MTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKK-DWLMEFFDN 317
+ SAT+ K ++++A+ +++P++V G + A VTQ + IL K +WL
Sbjct: 436 LFSATFRKKIEKLARDILIDPIRVVQGDIG-EANEDVTQIVEILHSGPSKWNWLTRRLVE 494
Query: 318 MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICV 377
V++F+ +KA+ ++++L + L+GD+ Q +R + D + V
Sbjct: 495 FTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLV 553
Query: 378 ATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEI 437
ATDVA+RGLD+P + VINYD I+ + HR+GRTGRAG+ G + TL+T KD + A ++
Sbjct: 554 ATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDL 613
Query: 438 IPILE 442
+ LE
Sbjct: 614 VRNLE 618
Score = 654 (235.3 bits), Expect = 1.1e-62, P = 1.1e-62
Identities = 145/397 (36%), Positives = 225/397 (56%)
Query: 540 PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQ 599
P KN Y E E+ N+TP+Q+ R K N + VS P P P +SF
Sbjct: 211 PPFEKNFYNEHEEITNLTPQQLIDLRHKLN-LRVSGAA--------P----PRPGSSFAH 257
Query: 600 AFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH 659
F +++ Q+ +T P+PIQ Q P+ +SG DMIGIA+TG+GKT AF+ P LIH
Sbjct: 258 -FGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHI- 315
Query: 660 LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKELEPQLEKIRE 718
+ + GP +++ PTREL QI E + L++V VYGG + Q + ++E
Sbjct: 316 MDQKELEPGDGPIAVIVCPTRELCQQIHAEGKRFGKAYNLRSVAVYGGGSMWEQAKALQE 375
Query: 719 GCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTV 778
G I++ TPGRL D V + + +L+ VS++V DEADRM D+GFE Q+ + ++ P+RQT+
Sbjct: 376 GAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTL 435
Query: 779 MTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKK-DWLMEFFDN 837
+ SAT+ K ++++A+ +++P++V G + A VTQ + IL K +WL
Sbjct: 436 LFSATFRKKIEKLARDILIDPIRVVQGDIG-EANEDVTQIVEILHSGPSKWNWLTRRLVE 494
Query: 838 MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICV 897
V++F+ +KA+ ++++L + L+GD+ Q +R + D + V
Sbjct: 495 FTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLV 553
Query: 898 ATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
ATDVA+RGLD+P + VINYD I+ + HR+GRTG
Sbjct: 554 ATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTG 590
>POMBASE|SPCC10H11.01 [details] [associations]
symbol:prp11 "ATP-dependent RNA helicase Prp11"
species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
NextBio:20800113 Uniprot:Q9P7C7
Length = 1014
Score = 709 (254.6 bits), Expect = 8.5e-70, P = 8.5e-70
Identities = 162/425 (38%), Positives = 249/425 (58%)
Query: 24 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQH 83
K+ Y E E+ N++P +V+ R + I + G ID P PVTS+ Q
Sbjct: 379 KDFYVEPEELKNLSPAEVDELRASLDGIKIR-----G-ID------CPKPVTSWSQCGLS 426
Query: 84 YPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTT 143
+ + + +L + P+ IQAQA P + SG D+IG+A+TG+GKT AFLLP H Q
Sbjct: 427 -AQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQR- 484
Query: 144 PISERAGPSVLVMAPTRELATQIEREVNK-IDYKGLKAVCVYGGKEIEPQLEKIREGCHI 202
P+ GP ++M PTRELA QI RE + ++A C YGG I+ Q+ ++ G I
Sbjct: 485 PLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEI 544
Query: 203 LIATPGRLNDFVSRAS---IDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVM 259
++ TPGR+ D +S + +L +++VLDEADRM DLGFEPQ+ + I P+RQTV+
Sbjct: 545 VVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTVL 604
Query: 260 TSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNM- 318
SAT+ + ++ +A+K + PV++ VG + A+ V Q + + E+ K L+E +
Sbjct: 605 FSATFPRAMEALARKVLKKPVEITVGGRSVVASE-VEQIVEVRPEESKFSRLLELLGELY 663
Query: 319 DEERD-KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICV 377
+ + D + +VF+ R+ S A+ SDL + S S++G Q DR+ + D +G + +
Sbjct: 664 NNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVLI 723
Query: 378 ATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEI 437
AT V +RGLDV L V+NYD P+H+E+YVHRVGRTGRAG +G ++T +T + +A +I
Sbjct: 724 ATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKYAVDI 783
Query: 438 IPILE 442
L+
Sbjct: 784 AKALK 788
Score = 666 (239.5 bits), Expect = 1.3e-64, P = 1.3e-64
Identities = 152/397 (38%), Positives = 232/397 (58%)
Query: 544 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQH 603
K+ Y E E+ N++P +V+ R + I + G ID P PVTS+ Q
Sbjct: 379 KDFYVEPEELKNLSPAEVDELRASLDGIKIR-----G-ID------CPKPVTSWSQCGLS 426
Query: 604 YPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTT 663
+ + + +L + P+ IQAQA P + SG D+IG+A+TG+GKT AFLLP H Q
Sbjct: 427 -AQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQR- 484
Query: 664 PISERAGPSVLVMAPTRELATQIEREVNK-IDYKGLKAVCVYGGKELEPQLEKIREGCHI 722
P+ GP ++M PTRELA QI RE + ++A C YGG ++ Q+ ++ G I
Sbjct: 485 PLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEI 544
Query: 723 LIATPGRLNDFVSRAS---IDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVM 779
++ TPGR+ D +S + +L +++VLDEADRM DLGFEPQ+ + I P+RQTV+
Sbjct: 545 VVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTVL 604
Query: 780 TSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNM- 838
SAT+ + ++ +A+K + PV++ VG + A+ V Q + + E+ K L+E +
Sbjct: 605 FSATFPRAMEALARKVLKKPVEITVGGRSVVASE-VEQIVEVRPEESKFSRLLELLGELY 663
Query: 839 DEERD-KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICV 897
+ + D + +VF+ R+ S A+ SDL + S S++G Q DR+ + D +G + +
Sbjct: 664 NNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVLI 723
Query: 898 ATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
AT V +RGLDV L V+NYD P+H+E+YVHRVGRTG
Sbjct: 724 ATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTG 760
>RGD|1304909 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1304909
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0003676 EMBL:CH473948 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
CTD:11325 KO:K12835 OrthoDB:EOG47WNN9 GeneTree:ENSGT00610000086076
IPI:IPI00361283 RefSeq:NP_001100529.1 UniGene:Rn.154550
Ensembl:ENSRNOT00000013046 GeneID:303607 KEGG:rno:303607
UCSC:RGD:1304909 NextBio:651732 Uniprot:D4A031
Length = 929
Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
Identities = 157/425 (36%), Positives = 244/425 (57%)
Query: 20 PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQ 79
P KN Y E E+ N+TP+Q+ R K N + VS P P P +SF
Sbjct: 211 PPFEKNFYNEHEEITNLTPQQLIDLRHKLN-LRVSGAA--------P----PRPGSSFAH 257
Query: 80 AFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH 139
F +++ Q+ +T P+PIQ Q P+ +SG DMIGIA+TG+GKT AF+ P LIH
Sbjct: 258 -FGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHI- 315
Query: 140 LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEIEPQLEKIRE 198
+ + GP +++ PTREL QI E + L++V VYGG + Q + ++E
Sbjct: 316 MDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQE 375
Query: 199 GCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTV 258
G I++ TPGRL D V + + +L+ VS++V DEADRM D+GFE Q+ + ++ P+RQT+
Sbjct: 376 GAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTL 435
Query: 259 MTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKK-DWLMEFFDN 317
+ SAT+ K ++++A+ +++P++V G + A VTQ + IL K +WL
Sbjct: 436 LFSATFRKKIEKLARDILIDPIRVVQGDIG-EANEDVTQIVEILHSGPSKWNWLTRRLVE 494
Query: 318 MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICV 377
V++F+ +KA+ ++++L + L+GD+ Q +R + D + V
Sbjct: 495 FTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVILDFKKKDIPVLV 553
Query: 378 ATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEI 437
ATDVA+RGLD+P + VINYD I+ + HR+GRTGRAG+ G + TL+T KD + A ++
Sbjct: 554 ATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDL 613
Query: 438 IPILE 442
+ LE
Sbjct: 614 VRNLE 618
Score = 653 (234.9 bits), Expect = 1.1e-62, P = 1.1e-62
Identities = 145/397 (36%), Positives = 225/397 (56%)
Query: 540 PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQ 599
P KN Y E E+ N+TP+Q+ R K N + VS P P P +SF
Sbjct: 211 PPFEKNFYNEHEEITNLTPQQLIDLRHKLN-LRVSGAA--------P----PRPGSSFAH 257
Query: 600 AFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH 659
F +++ Q+ +T P+PIQ Q P+ +SG DMIGIA+TG+GKT AF+ P LIH
Sbjct: 258 -FGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHI- 315
Query: 660 LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKELEPQLEKIRE 718
+ + GP +++ PTREL QI E + L++V VYGG + Q + ++E
Sbjct: 316 MDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQE 375
Query: 719 GCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTV 778
G I++ TPGRL D V + + +L+ VS++V DEADRM D+GFE Q+ + ++ P+RQT+
Sbjct: 376 GAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTL 435
Query: 779 MTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKK-DWLMEFFDN 837
+ SAT+ K ++++A+ +++P++V G + A VTQ + IL K +WL
Sbjct: 436 LFSATFRKKIEKLARDILIDPIRVVQGDIG-EANEDVTQIVEILHSGPSKWNWLTRRLVE 494
Query: 838 MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICV 897
V++F+ +KA+ ++++L + L+GD+ Q +R + D + V
Sbjct: 495 FTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVILDFKKKDIPVLV 553
Query: 898 ATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
ATDVA+RGLD+P + VINYD I+ + HR+GRTG
Sbjct: 554 ATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTG 590
>CGD|CAL0004832 [details] [associations]
symbol:orf19.7392 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:2000765 "regulation of cytoplasmic translation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004832 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:AACQ01000066 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K11594 RefSeq:XP_716633.1
ProteinModelPortal:Q5A4E2 SMR:Q5A4E2 PRIDE:Q5A4E2 GeneID:3641752
KEGG:cal:CaO19.7392 Uniprot:Q5A4E2
Length = 672
Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
Identities = 167/439 (38%), Positives = 253/439 (57%)
Query: 28 KEDPEVANMTPEQVEAFRKKNND-ISVSVVTSDGQID---ENPDFQIPNPVTSFKQAFQH 83
K +P N E VE F ++ S + D D E ++P P+TSF
Sbjct: 136 KHEPAPRNEKLE-VELFGTADDSHFQSSGINFDNYDDIPVEASGDKVPEPITSFTAP--P 192
Query: 84 YPEILRQLENLS-FTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQ- 141
E+L + LS FT P+P+Q + PI+ +G D++ AQTG+GKT FL P L ++++
Sbjct: 193 LDELLVENIQLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESYMKG 252
Query: 142 TTPISERAG--------PSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGGKEIEPQ 192
P+ E G P++LVMAPTREL +QI E K Y+ ++A VYGG +I Q
Sbjct: 253 PAPVPESNGAFSSHKVYPTILVMAPTRELVSQIYEESKKFSYRSWVRACVVYGGADIGQQ 312
Query: 193 LEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQIN----KTS 248
+ + GC +L+ATPGRL D + R + L + ++VLDEADRMLD+GFEPQI +
Sbjct: 313 MRNMDRGCDLLVATPGRLKDLLDRGKVSLANIRYLVLDEADRMLDMGFEPQIRYIVEECD 372
Query: 249 IYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKK 308
+ +RQT+M SAT+ +D+Q +A+ ++ + V ++VG + + + +TQKI+ +++DEKK
Sbjct: 373 MPAVKDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVG-STSENITQKILYVEDDEKK 431
Query: 309 DWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDI 368
+++ E +VF K ++ L Q + +++GD SQ +RE AL
Sbjct: 432 SVILDLLSA--NENGLTIVFTETKRMADNLADYLYDQGFPATAIHGDRSQYEREKALAAF 489
Query: 369 TSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTR 428
+G A I VAT VA+RGLD+P+++HVINYD PS I++YVHR+GRTGRAG G + R
Sbjct: 490 KNGAAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNR 549
Query: 429 KDWSHAHEIIPILEEGGHE 447
+ + +I +L E E
Sbjct: 550 NNKNVVKGLIELLSEANQE 568
Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
Identities = 157/406 (38%), Positives = 239/406 (58%)
Query: 548 KEDPEVANMTPEQVEAFRKKNND-ISVSVVTSDGQID---ENPDFQIPNPVTSFKQAFQH 603
K +P N E VE F ++ S + D D E ++P P+TSF
Sbjct: 136 KHEPAPRNEKLE-VELFGTADDSHFQSSGINFDNYDDIPVEASGDKVPEPITSFTAP--P 192
Query: 604 YPEILRQLENLS-FTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQ- 661
E+L + LS FT P+P+Q + PI+ +G D++ AQTG+GKT FL P L ++++
Sbjct: 193 LDELLVENIQLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESYMKG 252
Query: 662 TTPISERAG--------PSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGGKELEPQ 712
P+ E G P++LVMAPTREL +QI E K Y+ ++A VYGG ++ Q
Sbjct: 253 PAPVPESNGAFSSHKVYPTILVMAPTRELVSQIYEESKKFSYRSWVRACVVYGGADIGQQ 312
Query: 713 LEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQIN----KTS 768
+ + GC +L+ATPGRL D + R + L + ++VLDEADRMLD+GFEPQI +
Sbjct: 313 MRNMDRGCDLLVATPGRLKDLLDRGKVSLANIRYLVLDEADRMLDMGFEPQIRYIVEECD 372
Query: 769 IYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKK 828
+ +RQT+M SAT+ +D+Q +A+ ++ + V ++VG + + + +TQKI+ +++DEKK
Sbjct: 373 MPAVKDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVG-STSENITQKILYVEDDEKK 431
Query: 829 DWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDI 888
+++ E +VF K ++ L Q + +++GD SQ +RE AL
Sbjct: 432 SVILDLLSA--NENGLTIVFTETKRMADNLADYLYDQGFPATAIHGDRSQYEREKALAAF 489
Query: 889 TSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
+G A I VAT VA+RGLD+P+++HVINYD PS I++YVHR+GRTG
Sbjct: 490 KNGAAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTG 535
>TAIR|locus:2041549 [details] [associations]
symbol:AT2G42520 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005777 "peroxisome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005777 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC007087 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 ProtClustDB:CLSN2683925
EMBL:BT004111 IPI:IPI00545939 PIR:H84854 RefSeq:NP_181780.1
UniGene:At.43442 ProteinModelPortal:Q84W89 SMR:Q84W89 IntAct:Q84W89
PaxDb:Q84W89 PRIDE:Q84W89 EnsemblPlants:AT2G42520.1 GeneID:818852
KEGG:ath:AT2G42520 GeneFarm:1013 TAIR:At2g42520 InParanoid:Q84W89
OMA:ADSENTG PhylomeDB:Q84W89 Genevestigator:Q84W89
GermOnline:AT2G42520 Uniprot:Q84W89
Length = 633
Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
Identities = 164/448 (36%), Positives = 254/448 (56%)
Query: 16 WAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVT 75
W R + + +D E PE AF +++N + D I+ + D +P PV
Sbjct: 108 WDRREREVNPFENDDSE-----PEP--AFTEQDNTVINFDAYEDIPIETSGD-NVPPPVN 159
Query: 76 SFKQAFQHYPEILR-QLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPA 134
+F + E L + + P+P+Q A PIL+ G D++ AQTG+GKT AF P
Sbjct: 160 TFAEI--DLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPI 217
Query: 135 LI----HTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEI 189
+ H+Q S P ++++PTRELA+QI E K Y+ G+K V YGG I
Sbjct: 218 ISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPI 277
Query: 190 EPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT-- 247
QL ++ G IL+ATPGRLND + RA + ++ + F+ LDEADRMLD+GFEPQI K
Sbjct: 278 NQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVE 337
Query: 248 SIYINPN--RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKI-IILDE 304
+ + P RQT++ SAT+ +++QR+A ++ N + + VG + ++T + Q++ +LD
Sbjct: 338 QMDMPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVG-SSTDLIVQRVEFVLDS 396
Query: 305 DEKKDWLMEFFDNMDEE--RDK---VMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQE 359
D K+ LM+ E + K +VF+ K ++ + L + S++GD +Q+
Sbjct: 397 D-KRSHLMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQ 455
Query: 360 DREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKS 419
+RE+AL+ SG I VATDVA+RGLD+P + HV+N+D P+ I++YVHR+GRTGRAGKS
Sbjct: 456 EREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKS 515
Query: 420 GESITLMTRKDWSHAHEIIPILEEGGHE 447
G + + S A + +++E E
Sbjct: 516 GLATAFFNDGNTSLARPLAELMQEANQE 543
Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
Identities = 153/415 (36%), Positives = 238/415 (57%)
Query: 536 WAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVT 595
W R + + +D E PE AF +++N + D I+ + D +P PV
Sbjct: 108 WDRREREVNPFENDDSE-----PEP--AFTEQDNTVINFDAYEDIPIETSGD-NVPPPVN 159
Query: 596 SFKQAFQHYPEILR-QLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPA 654
+F + E L + + P+P+Q A PIL+ G D++ AQTG+GKT AF P
Sbjct: 160 TFAEI--DLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPI 217
Query: 655 LI----HTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEL 709
+ H+Q S P ++++PTRELA+QI E K Y+ G+K V YGG +
Sbjct: 218 ISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPI 277
Query: 710 EPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT-- 767
QL ++ G IL+ATPGRLND + RA + ++ + F+ LDEADRMLD+GFEPQI K
Sbjct: 278 NQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVE 337
Query: 768 SIYINPN--RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKI-IILDE 824
+ + P RQT++ SAT+ +++QR+A ++ N + + VG + ++T + Q++ +LD
Sbjct: 338 QMDMPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVG-SSTDLIVQRVEFVLDS 396
Query: 825 DEKKDWLMEFFDNMDEE--RDK---VMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQE 879
D K+ LM+ E + K +VF+ K ++ + L + S++GD +Q+
Sbjct: 397 D-KRSHLMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQ 455
Query: 880 DREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
+RE+AL+ SG I VATDVA+RGLD+P + HV+N+D P+ I++YVHR+GRTG
Sbjct: 456 EREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTG 510
>UNIPROTKB|Q5F485 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008104 "protein
localization" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
EMBL:AJ851415 IPI:IPI00576529 RefSeq:NP_001026097.1
UniGene:Gga.5156 ProteinModelPortal:Q5F485 STRING:Q5F485
GeneID:419959 KEGG:gga:419959 CTD:11325 HOGENOM:HOG000268793
HOVERGEN:HBG081425 InParanoid:Q5F485 KO:K12835 OrthoDB:EOG47WNN9
NextBio:20822943 Uniprot:Q5F485
Length = 944
Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
Identities = 156/425 (36%), Positives = 244/425 (57%)
Query: 20 PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQ 79
P KN Y E E+ ++TP+QV R K N + VS P P P +SF +
Sbjct: 211 PPFEKNFYDEHEEITSLTPQQVVELRHKLN-LRVSGAA--------P----PRPGSSFAR 257
Query: 80 AFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH 139
F +++ Q+ +T P+PIQ Q P+ MSG DMIGIA+TG+GKT AF+ P LIH
Sbjct: 258 -FGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHI- 315
Query: 140 LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEIEPQLEKIRE 198
+ + GP +++ PTREL QI E + L++V VYGG + Q + ++E
Sbjct: 316 MDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQE 375
Query: 199 GCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTV 258
G I++ TPGRL D V + + +L+ V+++V DEADRM D+GFE Q+ + ++ P+RQT+
Sbjct: 376 GAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTL 435
Query: 259 MTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKK-DWLMEFFDN 317
+ SAT+ K ++++A+ +++P++V G + A VTQ + I K +WL
Sbjct: 436 LFSATFRKKIEKLARDILIDPIRVVQGDIG-EANEDVTQIVEIFPSGPSKWNWLTRRLVE 494
Query: 318 MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICV 377
V++F+ +KA+ ++++L + L+GD+ Q +R + + I V
Sbjct: 495 FTSS-GSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILV 553
Query: 378 ATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEI 437
ATDVA+RGLD+P + VINYD I+ + HR+GRTGRAG+ G + TL+T KD + A ++
Sbjct: 554 ATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDL 613
Query: 438 IPILE 442
+ LE
Sbjct: 614 VRNLE 618
Score = 649 (233.5 bits), Expect = 6.0e-62, P = 6.0e-62
Identities = 144/397 (36%), Positives = 225/397 (56%)
Query: 540 PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQ 599
P KN Y E E+ ++TP+QV R K N + VS P P P +SF +
Sbjct: 211 PPFEKNFYDEHEEITSLTPQQVVELRHKLN-LRVSGAA--------P----PRPGSSFAR 257
Query: 600 AFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH 659
F +++ Q+ +T P+PIQ Q P+ MSG DMIGIA+TG+GKT AF+ P LIH
Sbjct: 258 -FGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHI- 315
Query: 660 LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKELEPQLEKIRE 718
+ + GP +++ PTREL QI E + L++V VYGG + Q + ++E
Sbjct: 316 MDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQE 375
Query: 719 GCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTV 778
G I++ TPGRL D V + + +L+ V+++V DEADRM D+GFE Q+ + ++ P+RQT+
Sbjct: 376 GAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTL 435
Query: 779 MTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKK-DWLMEFFDN 837
+ SAT+ K ++++A+ +++P++V G + A VTQ + I K +WL
Sbjct: 436 LFSATFRKKIEKLARDILIDPIRVVQGDIG-EANEDVTQIVEIFPSGPSKWNWLTRRLVE 494
Query: 838 MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICV 897
V++F+ +KA+ ++++L + L+GD+ Q +R + + I V
Sbjct: 495 FTSS-GSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILV 553
Query: 898 ATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
ATDVA+RGLD+P + VINYD I+ + HR+GRTG
Sbjct: 554 ATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTG 590
>FB|FBgn0036104 [details] [associations]
symbol:CG6418 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE014296 GO:GO:0006200
GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 KO:K12835 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AY061400 RefSeq:NP_648413.1
UniGene:Dm.922 SMR:Q9VTC1 IntAct:Q9VTC1 MINT:MINT-311970
STRING:Q9VTC1 EnsemblMetazoa:FBtr0076274 GeneID:39218
KEGG:dme:Dmel_CG6418 UCSC:CG6418-RB FlyBase:FBgn0036104
InParanoid:Q9VTC1 OrthoDB:EOG4KKWJ0 ChiTaRS:CG6418 GenomeRNAi:39218
NextBio:812543 Uniprot:Q9VTC1
Length = 791
Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
Identities = 157/421 (37%), Positives = 238/421 (56%)
Query: 24 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQH 83
KN Y + ++A + EQV R+ + V V +P P PVTSF F
Sbjct: 231 KNFYTQHDDIAALDDEQVRELRRT---LGVKVT------GPSP----PKPVTSFGH-FGF 276
Query: 84 YPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTT 143
++++ + +T P+PIQAQA P +SG D+IGIA+TG+GKT AF+ P L+H +
Sbjct: 277 DEQLIKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLMHV-MDQK 335
Query: 144 PISERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHI 202
+ GP L++APTREL+ QI E K L VC YGG Q + + +G I
Sbjct: 336 QLKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKALEQGAEI 395
Query: 203 LIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSA 262
++ATPGR+ D V + +L+ V+F+VLDEADRM +GFEPQ+ ++ P+RQ +M SA
Sbjct: 396 IVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQCLMFSA 455
Query: 263 TWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDED-EKKDWLMEFFDNMDEE 321
T+ K ++R+A+ + +PV++ G L+ A +TQ + + +K +WL+ E
Sbjct: 456 TFKKRIERLARDVLSDPVRIVQGDLN-EANQDITQSVYVFPNPLQKWNWLLCHLVKFLSE 514
Query: 322 RDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDV 381
V++F+ +K +S++L + L+GD+ Q DR + I VATDV
Sbjct: 515 -GSVLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDILVATDV 573
Query: 382 ASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPIL 441
A+RGLD+P + +V+NYD IE + HR+GRTGRAG+ G + TL+T KD A ++ L
Sbjct: 574 AARGLDIPHIRNVVNYDTARDIETHTHRIGRTGRAGEKGNAYTLVTDKDKEFAGHLVRNL 633
Query: 442 E 442
E
Sbjct: 634 E 634
Score = 650 (233.9 bits), Expect = 9.8e-66, Sum P(2) = 9.8e-66
Identities = 145/393 (36%), Positives = 221/393 (56%)
Query: 544 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQH 603
KN Y + ++A + EQV R+ + V V +P P PVTSF F
Sbjct: 231 KNFYTQHDDIAALDDEQVRELRRT---LGVKVT------GPSP----PKPVTSFGH-FGF 276
Query: 604 YPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTT 663
++++ + +T P+PIQAQA P +SG D+IGIA+TG+GKT AF+ P L+H +
Sbjct: 277 DEQLIKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLMHV-MDQK 335
Query: 664 PISERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHI 722
+ GP L++APTREL+ QI E K L VC YGG Q + + +G I
Sbjct: 336 QLKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKALEQGAEI 395
Query: 723 LIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSA 782
++ATPGR+ D V + +L+ V+F+VLDEADRM +GFEPQ+ ++ P+RQ +M SA
Sbjct: 396 IVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQCLMFSA 455
Query: 783 TWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDED-EKKDWLMEFFDNMDEE 841
T+ K ++R+A+ + +PV++ G L+ A +TQ + + +K +WL+ E
Sbjct: 456 TFKKRIERLARDVLSDPVRIVQGDLN-EANQDITQSVYVFPNPLQKWNWLLCHLVKFLSE 514
Query: 842 RDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDV 901
V++F+ +K +S++L + L+GD+ Q DR + I VATDV
Sbjct: 515 -GSVLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDILVATDV 573
Query: 902 ASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
A+RGLD+P + +V+NYD IE + HR+GRTG
Sbjct: 574 AARGLDIPHIRNVVNYDTARDIETHTHRIGRTG 606
Score = 37 (18.1 bits), Expect = 9.8e-66, Sum P(2) = 9.8e-66
Identities = 6/12 (50%), Positives = 10/12 (83%)
Query: 313 EFFDNMDEERDK 324
++FD+ DE R+K
Sbjct: 91 DYFDDDDEPREK 102
>UNIPROTKB|F1NJ40 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00576529 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AADN02056764
Ensembl:ENSGALT00000000811 ArrayExpress:F1NJ40 Uniprot:F1NJ40
Length = 946
Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
Identities = 156/425 (36%), Positives = 243/425 (57%)
Query: 20 PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQ 79
P KN Y E E+ ++TP+QV R K N + VS P P P +SF
Sbjct: 213 PPFEKNFYDEHEEITSLTPQQVVELRHKLN-LRVSGAA--------P----PRPGSSFAH 259
Query: 80 AFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH 139
F +++ Q+ +T P+PIQ Q P+ MSG DMIGIA+TG+GKT AF+ P LIH
Sbjct: 260 -FGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHI- 317
Query: 140 LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEIEPQLEKIRE 198
+ + GP +++ PTREL QI E + L++V VYGG + Q + ++E
Sbjct: 318 MDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQE 377
Query: 199 GCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTV 258
G I++ TPGRL D V + + +L+ V+++V DEADRM D+GFE Q+ + ++ P+RQT+
Sbjct: 378 GAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTL 437
Query: 259 MTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKK-DWLMEFFDN 317
+ SAT+ K ++++A+ +++P++V G + A VTQ + I K +WL
Sbjct: 438 LFSATFRKKIEKLARDILIDPIRVVQGDIG-EANEDVTQIVEIFPSGPSKWNWLTRRLVE 496
Query: 318 MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICV 377
V++F+ +KA+ ++++L + L+GD+ Q +R + + I V
Sbjct: 497 FTSS-GSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILV 555
Query: 378 ATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEI 437
ATDVA+RGLD+P + VINYD I+ + HR+GRTGRAG+ G + TL+T KD + A ++
Sbjct: 556 ATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDL 615
Query: 438 IPILE 442
+ LE
Sbjct: 616 VRNLE 620
Score = 648 (233.2 bits), Expect = 8.3e-62, P = 8.3e-62
Identities = 144/397 (36%), Positives = 224/397 (56%)
Query: 540 PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQ 599
P KN Y E E+ ++TP+QV R K N + VS P P P +SF
Sbjct: 213 PPFEKNFYDEHEEITSLTPQQVVELRHKLN-LRVSGAA--------P----PRPGSSFAH 259
Query: 600 AFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH 659
F +++ Q+ +T P+PIQ Q P+ MSG DMIGIA+TG+GKT AF+ P LIH
Sbjct: 260 -FGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHI- 317
Query: 660 LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKELEPQLEKIRE 718
+ + GP +++ PTREL QI E + L++V VYGG + Q + ++E
Sbjct: 318 MDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQE 377
Query: 719 GCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTV 778
G I++ TPGRL D V + + +L+ V+++V DEADRM D+GFE Q+ + ++ P+RQT+
Sbjct: 378 GAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTL 437
Query: 779 MTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKK-DWLMEFFDN 837
+ SAT+ K ++++A+ +++P++V G + A VTQ + I K +WL
Sbjct: 438 LFSATFRKKIEKLARDILIDPIRVVQGDIG-EANEDVTQIVEIFPSGPSKWNWLTRRLVE 496
Query: 838 MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICV 897
V++F+ +KA+ ++++L + L+GD+ Q +R + + I V
Sbjct: 497 FTSS-GSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILV 555
Query: 898 ATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
ATDVA+RGLD+P + VINYD I+ + HR+GRTG
Sbjct: 556 ATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTG 592
>UNIPROTKB|F1P0H1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00610000086076 EMBL:AADN02056764
IPI:IPI00819332 Ensembl:ENSGALT00000040437 ArrayExpress:F1P0H1
Uniprot:F1P0H1
Length = 703
Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
Identities = 156/425 (36%), Positives = 243/425 (57%)
Query: 20 PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQ 79
P KN Y E E+ ++TP+QV R K N + VS P P P +SF
Sbjct: 206 PPFEKNFYDEHEEITSLTPQQVVELRHKLN-LRVSGAA--------P----PRPGSSFAH 252
Query: 80 AFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH 139
F +++ Q+ +T P+PIQ Q P+ MSG DMIGIA+TG+GKT AF+ P LIH
Sbjct: 253 -FGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHI- 310
Query: 140 LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEIEPQLEKIRE 198
+ + GP +++ PTREL QI E + L++V VYGG + Q + ++E
Sbjct: 311 MDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQE 370
Query: 199 GCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTV 258
G I++ TPGRL D V + + +L+ V+++V DEADRM D+GFE Q+ + ++ P+RQT+
Sbjct: 371 GAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTL 430
Query: 259 MTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKK-DWLMEFFDN 317
+ SAT+ K ++++A+ +++P++V G + A VTQ + I K +WL
Sbjct: 431 LFSATFRKKIEKLARDILIDPIRVVQGDIG-EANEDVTQIVEIFPSGPSKWNWLTRRLVE 489
Query: 318 MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICV 377
V++F+ +KA+ ++++L + L+GD+ Q +R + + I V
Sbjct: 490 FTSS-GSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILV 548
Query: 378 ATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEI 437
ATDVA+RGLD+P + VINYD I+ + HR+GRTGRAG+ G + TL+T KD + A ++
Sbjct: 549 ATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDL 608
Query: 438 IPILE 442
+ LE
Sbjct: 609 VRNLE 613
Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
Identities = 144/397 (36%), Positives = 224/397 (56%)
Query: 540 PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQ 599
P KN Y E E+ ++TP+QV R K N + VS P P P +SF
Sbjct: 206 PPFEKNFYDEHEEITSLTPQQVVELRHKLN-LRVSGAA--------P----PRPGSSFAH 252
Query: 600 AFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH 659
F +++ Q+ +T P+PIQ Q P+ MSG DMIGIA+TG+GKT AF+ P LIH
Sbjct: 253 -FGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHI- 310
Query: 660 LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKELEPQLEKIRE 718
+ + GP +++ PTREL QI E + L++V VYGG + Q + ++E
Sbjct: 311 MDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQE 370
Query: 719 GCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTV 778
G I++ TPGRL D V + + +L+ V+++V DEADRM D+GFE Q+ + ++ P+RQT+
Sbjct: 371 GAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTL 430
Query: 779 MTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKK-DWLMEFFDN 837
+ SAT+ K ++++A+ +++P++V G + A VTQ + I K +WL
Sbjct: 431 LFSATFRKKIEKLARDILIDPIRVVQGDIG-EANEDVTQIVEIFPSGPSKWNWLTRRLVE 489
Query: 838 MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICV 897
V++F+ +KA+ ++++L + L+GD+ Q +R + + I V
Sbjct: 490 FTSS-GSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILV 548
Query: 898 ATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
ATDVA+RGLD+P + VINYD I+ + HR+GRTG
Sbjct: 549 ATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTG 585
>SGD|S000006040 [details] [associations]
symbol:DBP1 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000006040 GO:GO:0005524
GO:GO:0005737 GO:GO:0006413 EMBL:BK006949 GO:GO:0003743 EMBL:U43503
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:X55993 PIR:S62003 RefSeq:NP_015206.1 ProteinModelPortal:P24784
SMR:P24784 DIP:DIP-2576N IntAct:P24784 MINT:MINT-426870
STRING:P24784 PaxDb:P24784 EnsemblFungi:YPL119C GeneID:855984
KEGG:sce:YPL119C CYGD:YPL119c GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN OrthoDB:EOG4XPTQ4
NextBio:980825 Genevestigator:P24784 GermOnline:YPL119C
Uniprot:P24784
Length = 617
Score = 701 (251.8 bits), Expect = 3.8e-69, P = 3.8e-69
Identities = 154/393 (39%), Positives = 233/393 (59%)
Query: 70 IPNPVTSFKQAFQHYPEILRQ-LENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTF 128
+P P+ F E+L + ++ SFT P+P+Q + PI+ G D++ AQTG+GKT
Sbjct: 149 VPEPILDFSSP--PLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTG 206
Query: 129 AFLLPALIHTHLQ-TTPISERA-------G-PSVLVMAPTRELATQIEREVNKIDYKGLK 179
FL P +P+ E+A G PS LV+APTRELATQI E K Y+
Sbjct: 207 GFLFPLFTELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWV 266
Query: 180 AVCV-YGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDL 238
CV YGG I Q+ ++ GC +L+ATPGRLND + R + L + ++VLDEADRMLD+
Sbjct: 267 RPCVVYGGAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDM 326
Query: 239 GFEPQIN----KTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHT 294
GFEPQI + + NRQT+M SAT+ D+Q +A+ ++ N + ++VG + + +
Sbjct: 327 GFEPQIRHIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVG-STSEN 385
Query: 295 VTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYG 354
+TQ+I+ +D+ +KK L++ E + ++F+ K ++ L Q K+ +++G
Sbjct: 386 ITQRILYVDDMDKKSALLDLLSA--EHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHG 443
Query: 355 DLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 414
D +Q +RE AL + A I VAT VA+RGLD+P++THVINYD PS I++YVHR+GRTG
Sbjct: 444 DRTQAERERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTG 503
Query: 415 RAGKSGESITLMTRKDWSHAHEIIPILEEGGHE 447
RAG +G + + + + ++ IL E E
Sbjct: 504 RAGNTGVATSFFNSNNQNIVKGLMEILNEANQE 536
Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
Identities = 145/360 (40%), Positives = 218/360 (60%)
Query: 590 IPNPVTSFKQAFQHYPEILRQ-LENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTF 648
+P P+ F E+L + ++ SFT P+P+Q + PI+ G D++ AQTG+GKT
Sbjct: 149 VPEPILDFSSP--PLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTG 206
Query: 649 AFLLPALIHTHLQ-TTPISERA-------G-PSVLVMAPTRELATQIEREVNKIDYKGLK 699
FL P +P+ E+A G PS LV+APTRELATQI E K Y+
Sbjct: 207 GFLFPLFTELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWV 266
Query: 700 AVCV-YGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDL 758
CV YGG + Q+ ++ GC +L+ATPGRLND + R + L + ++VLDEADRMLD+
Sbjct: 267 RPCVVYGGAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDM 326
Query: 759 GFEPQIN----KTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHT 814
GFEPQI + + NRQT+M SAT+ D+Q +A+ ++ N + ++VG + + +
Sbjct: 327 GFEPQIRHIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVG-STSEN 385
Query: 815 VTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYG 874
+TQ+I+ +D+ +KK L++ E + ++F+ K ++ L Q K+ +++G
Sbjct: 386 ITQRILYVDDMDKKSALLDLLSA--EHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHG 443
Query: 875 DLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
D +Q +RE AL + A I VAT VA+RGLD+P++THVINYD PS I++YVHR+GRTG
Sbjct: 444 DRTQAERERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTG 503
>SGD|S000003046 [details] [associations]
symbol:DBP3 "RNA-Dependent ATPase, member of DExD/H-box
family" species:4932 "Saccharomyces cerevisiae" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000464
"endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000003046 GO:GO:0005524
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0030687
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S EMBL:M80437
EMBL:Z72600 PIR:S30805 RefSeq:NP_011437.3 RefSeq:NP_011442.3
ProteinModelPortal:P20447 SMR:P20447 DIP:DIP-2668N IntAct:P20447
MINT:MINT-1164200 STRING:P20447 PaxDb:P20447 PeptideAtlas:P20447
EnsemblFungi:YGL078C GeneID:852802 GeneID:852806 KEGG:sce:YGL073W
KEGG:sce:YGL078C CYGD:YGL078c GeneTree:ENSGT00680000100003
KO:K09419 OMA:EEEWPEK NextBio:972321 Genevestigator:P20447
GermOnline:YGL078C GO:GO:0000464 Uniprot:P20447
Length = 523
Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
Identities = 162/442 (36%), Positives = 265/442 (59%)
Query: 11 KERDKWAREPKIIKNVYKEDPE----VANMTPEQVEAFRK-KNNDISVSVVTSDGQIDEN 65
K+ K +E ++ + ++ PE VA+ Q EA +DI ++ ++++
Sbjct: 46 KKEKKGEKEVEVPEKESEKKPEPTSAVASEFYVQSEALTSLPQSDIDEYFKENEIAVEDS 105
Query: 66 PDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTG 125
D + P+ SF + + Q E F P+PIQA AWP L+SG D++G+A+TG+G
Sbjct: 106 LDLAL-RPLLSFD--YLSLDSSI-QAEISKFPKPTPIQAVAWPYLLSGKDVVGVAETGSG 161
Query: 126 KTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQI-EREVNKIDYKGLKAVCVY 184
KTFAF +PA+ +HL ++ G VLV++PTRELA+QI + + D G++ CVY
Sbjct: 162 KTFAFGVPAI--SHLMND--QKKRGIQVLVISPTRELASQIYDNLIVLTDKVGMQCCCVY 217
Query: 185 GGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQI 244
GG + Q ++++ +++ATPGRL D + S+DL V+++VLDEADRML+ GFE I
Sbjct: 218 GGVPKDEQRIQLKKS-QVVVATPGRLLDLLQEGSVDLSQVNYLVLDEADRMLEKGFEEDI 276
Query: 245 NKTSIYINPN-RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLD-LAATHTVTQKIIIL 302
+ + RQT+M +ATW K+V+ +A +M NP+KV++G+ D L A +TQ + ++
Sbjct: 277 KNIIRETDASKRQTLMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVV 336
Query: 303 DEDEKKDWLMEF---FDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQE 359
D K+ L+E + + ++ +KV++F K + + +L +++GDLSQ+
Sbjct: 337 DPRGKERKLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQ 396
Query: 360 DREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKS 419
R AL + SG + + +ATDVA+RGLD+P++ VIN FP +E+YVHR+GRTGRAG++
Sbjct: 397 QRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQT 456
Query: 420 GESITLMTRKDWSHAHEIIPIL 441
G + TL T ++ A ++ +L
Sbjct: 457 GTAHTLFTEQEKHLAGGLVNVL 478
Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
Identities = 153/415 (36%), Positives = 248/415 (59%)
Query: 531 KERDKWAREPKIIKNVYKEDPE----VANMTPEQVEAFRK-KNNDISVSVVTSDGQIDEN 585
K+ K +E ++ + ++ PE VA+ Q EA +DI ++ ++++
Sbjct: 46 KKEKKGEKEVEVPEKESEKKPEPTSAVASEFYVQSEALTSLPQSDIDEYFKENEIAVEDS 105
Query: 586 PDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTG 645
D + P+ SF + + Q E F P+PIQA AWP L+SG D++G+A+TG+G
Sbjct: 106 LDLAL-RPLLSFD--YLSLDSSI-QAEISKFPKPTPIQAVAWPYLLSGKDVVGVAETGSG 161
Query: 646 KTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQI-EREVNKIDYKGLKAVCVY 704
KTFAF +PA+ +HL ++ G VLV++PTRELA+QI + + D G++ CVY
Sbjct: 162 KTFAFGVPAI--SHLMND--QKKRGIQVLVISPTRELASQIYDNLIVLTDKVGMQCCCVY 217
Query: 705 GGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQI 764
GG + Q ++++ +++ATPGRL D + S+DL V+++VLDEADRML+ GFE I
Sbjct: 218 GGVPKDEQRIQLKKS-QVVVATPGRLLDLLQEGSVDLSQVNYLVLDEADRMLEKGFEEDI 276
Query: 765 NKTSIYINPN-RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLD-LAATHTVTQKIIIL 822
+ + RQT+M +ATW K+V+ +A +M NP+KV++G+ D L A +TQ + ++
Sbjct: 277 KNIIRETDASKRQTLMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVV 336
Query: 823 DEDEKKDWLMEF---FDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQE 879
D K+ L+E + + ++ +KV++F K + + +L +++GDLSQ+
Sbjct: 337 DPRGKERKLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQ 396
Query: 880 DREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
R AL + SG + + +ATDVA+RGLD+P++ VIN FP +E+YVHR+GRTG
Sbjct: 397 QRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTG 451
>SGD|S000005730 [details] [associations]
symbol:DED1 "ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA
helicase" species:4932 "Saccharomyces cerevisiae" [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IC]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IMP;IDA]
[GO:0033592 "RNA strand annealing activity" evidence=IDA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005730 GO:GO:0005524 GO:GO:0005737
EMBL:BK006948 GO:GO:0006413 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4 OMA:GNWANAN
EMBL:X57278 EMBL:Z75110 EMBL:X03245 PIR:S13653 RefSeq:NP_014847.3
RefSeq:NP_014849.3 ProteinModelPortal:P06634 SMR:P06634
DIP:DIP-5820N IntAct:P06634 MINT:MINT-697363 STRING:P06634
PaxDb:P06634 PeptideAtlas:P06634 EnsemblFungi:YOR204W GeneID:854379
GeneID:854381 KEGG:sce:YOR204W KEGG:sce:YOR206W CYGD:YOR204w
KO:K14833 SABIO-RK:P06634 NextBio:976514 Genevestigator:P06634
GermOnline:YOR204W GO:GO:0033592 Uniprot:P06634
Length = 604
Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
Identities = 153/392 (39%), Positives = 231/392 (58%)
Query: 70 IPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 129
+P P+T F +L ++ FT P+P+Q + PI+ +G D++ AQTG+GKT
Sbjct: 137 VPEPITEFTSPPLD-GLLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGG 195
Query: 130 FLLPAL---IHTHLQTTPISE------RAGPSVLVMAPTRELATQIEREVNKIDYKG-LK 179
FL P L T P S+ +A P+ ++MAPTRELATQI E K Y+ +K
Sbjct: 196 FLFPVLSESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVK 255
Query: 180 AVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLG 239
A VYGG I QL +I GC +L+ATPGRLND + R I L V ++VLDEADRMLD+G
Sbjct: 256 ACVVYGGSPIGNQLREIERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMG 315
Query: 240 FEPQINKT--SIYINP--NRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTV 295
FEPQI + P RQT+M SAT+ D+Q +A+ ++ + + ++VG + + + +
Sbjct: 316 FEPQIRHIVEDCDMTPVGERQTLMFSATFPADIQHLARDFLSDYIFLSVGRVG-STSENI 374
Query: 296 TQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGD 355
TQK++ ++ +KK L++ + ++F+ K ++ L Q ++ +++GD
Sbjct: 375 TQKVLYVENQDKKSALLDLLSASTD--GLTLIFVETKRMADQLTDFLIMQNFRATAIHGD 432
Query: 356 LSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGR 415
+Q +RE AL SG A + VAT VA+RGLD+P++THVINYD PS +++YVHR+GRTGR
Sbjct: 433 RTQSERERALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGR 492
Query: 416 AGKSGESITLMTRKDWSHAHEIIPILEEGGHE 447
AG +G + ++ + + IL E E
Sbjct: 493 AGNTGLATAFFNSENSNIVKGLHEILTEANQE 524
Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
Identities = 144/359 (40%), Positives = 217/359 (60%)
Query: 590 IPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 649
+P P+T F +L ++ FT P+P+Q + PI+ +G D++ AQTG+GKT
Sbjct: 137 VPEPITEFTSPPLD-GLLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGG 195
Query: 650 FLLPAL---IHTHLQTTPISE------RAGPSVLVMAPTRELATQIEREVNKIDYKG-LK 699
FL P L T P S+ +A P+ ++MAPTRELATQI E K Y+ +K
Sbjct: 196 FLFPVLSESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVK 255
Query: 700 AVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLG 759
A VYGG + QL +I GC +L+ATPGRLND + R I L V ++VLDEADRMLD+G
Sbjct: 256 ACVVYGGSPIGNQLREIERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMG 315
Query: 760 FEPQINKT--SIYINP--NRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTV 815
FEPQI + P RQT+M SAT+ D+Q +A+ ++ + + ++VG + + + +
Sbjct: 316 FEPQIRHIVEDCDMTPVGERQTLMFSATFPADIQHLARDFLSDYIFLSVGRVG-STSENI 374
Query: 816 TQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGD 875
TQK++ ++ +KK L++ + ++F+ K ++ L Q ++ +++GD
Sbjct: 375 TQKVLYVENQDKKSALLDLLSASTD--GLTLIFVETKRMADQLTDFLIMQNFRATAIHGD 432
Query: 876 LSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
+Q +RE AL SG A + VAT VA+RGLD+P++THVINYD PS +++YVHR+GRTG
Sbjct: 433 RTQSERERALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTG 491
>DICTYBASE|DDB_G0281925 [details] [associations]
symbol:DDB_G0281925 "DEAD/DEAH box helicase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0281925 GO:GO:0005524 GO:GO:0003676
EMBL:AAFI02000043 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 RefSeq:XP_640502.1
ProteinModelPortal:Q54T87 PRIDE:Q54T87 EnsemblProtists:DDB0304645
GeneID:8623317 KEGG:ddi:DDB_G0281925 InParanoid:Q54T87 OMA:SWGNRDN
Uniprot:Q54T87
Length = 586
Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
Identities = 161/383 (42%), Positives = 230/383 (60%)
Query: 71 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 130
PNP F +P + + + FT P+ IQ Q+WPI++ G+D++G+A TG+GKT AF
Sbjct: 108 PNPFQKFTD--YEFPRMFQHIFQ-GFTAPTVIQGQSWPIILGGNDLVGLAATGSGKTLAF 164
Query: 131 LLPALIHT-HLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG--LKAVCVYGGK 187
LLPAL+ L P S A P VLVMAPTRELA QIE EV K +G ++ +C YGG
Sbjct: 165 LLPALLKIISLPKRP-SYGATPLVLVMAPTRELAQQIE-EVCKTSIRGTSIRQLCAYGGL 222
Query: 188 EIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT 247
Q +R G I+I TPGRLND + + L +V ++VLDEADRMLD+GF PQI
Sbjct: 223 GKIDQSRILRNGVDIVIGTPGRLNDLLRKHH--LSSVQYLVLDEADRMLDMGFMPQIESL 280
Query: 248 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDE--D 305
I RQT+M SATW K+V+ +A K++ +P+K+ VGS +L + VTQ I+ +D+ D
Sbjct: 281 IDQIPKERQTLMFSATWPKEVKLLASKFLKDPIKITVGSQELTGSINVTQHIVNIDDLSD 340
Query: 306 EKKDWLMEFFDNMD-----EERDKVMVFMGRKASVSAMSSDLACQYR-KSCSLYGDLSQE 359
+ D L+ +D ++ + + V+VF K L+ Q KS L+ Q
Sbjct: 341 LQSDDLI--YDEINKILTADPTNTVIVFCNEKYKCDDFQHYLSTQKNVKSIVLHSGKDQR 398
Query: 360 DREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKS 419
RE L+ RI +ATDVA+RGLD+P + V NY P +IE+YVHR+GRTGRAGK+
Sbjct: 399 MRESGLKLFRDHRIRILIATDVAARGLDIPSVKAVFNYRLPGNIEDYVHRIGRTGRAGKT 458
Query: 420 GESITLMTRKDWSHAHEIIPILE 442
G++ + +T + + +++ IL+
Sbjct: 459 GDAWSYVTTQT-PNLRDLVKILQ 480
Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
Identities = 153/355 (43%), Positives = 211/355 (59%)
Query: 591 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 650
PNP F +P + + + FT P+ IQ Q+WPI++ G+D++G+A TG+GKT AF
Sbjct: 108 PNPFQKFTD--YEFPRMFQHIFQ-GFTAPTVIQGQSWPIILGGNDLVGLAATGSGKTLAF 164
Query: 651 LLPALIHT-HLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG--LKAVCVYGGK 707
LLPAL+ L P S A P VLVMAPTRELA QIE EV K +G ++ +C YGG
Sbjct: 165 LLPALLKIISLPKRP-SYGATPLVLVMAPTRELAQQIE-EVCKTSIRGTSIRQLCAYGGL 222
Query: 708 ELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT 767
Q +R G I+I TPGRLND + + L +V ++VLDEADRMLD+GF PQI
Sbjct: 223 GKIDQSRILRNGVDIVIGTPGRLNDLLRKHH--LSSVQYLVLDEADRMLDMGFMPQIESL 280
Query: 768 SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDE--D 825
I RQT+M SATW K+V+ +A K++ +P+K+ VGS +L + VTQ I+ +D+ D
Sbjct: 281 IDQIPKERQTLMFSATWPKEVKLLASKFLKDPIKITVGSQELTGSINVTQHIVNIDDLSD 340
Query: 826 EKKDWLMEFFDNMD-----EERDKVMVFMGRKASVSAMSSDLACQYR-KSCSLYGDLSQE 879
+ D L+ +D ++ + + V+VF K L+ Q KS L+ Q
Sbjct: 341 LQSDDLI--YDEINKILTADPTNTVIVFCNEKYKCDDFQHYLSTQKNVKSIVLHSGKDQR 398
Query: 880 DREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
RE L+ RI +ATDVA+RGLD+P + V NY P +IE+YVHR+GRTG
Sbjct: 399 MRESGLKLFRDHRIRILIATDVAARGLDIPSVKAVFNYRLPGNIEDYVHRIGRTG 453
>CGD|CAL0005460 [details] [associations]
symbol:DBP3 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000464 "endonucleolytic cleavage in
ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005460
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 EMBL:AACQ01000001
EMBL:AACQ01000002 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_723365.1 RefSeq:XP_723554.1
ProteinModelPortal:Q5APT8 STRING:Q5APT8 GeneID:3634868
GeneID:3635070 KEGG:cal:CaO19.12334 KEGG:cal:CaO19.4870 KO:K14811
Uniprot:Q5APT8
Length = 564
Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
Identities = 174/443 (39%), Positives = 263/443 (59%)
Query: 9 DRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKN-------NDISVSVVT---S 58
D+KE+ K +E K K +D E + + P ++ N + +S S + S
Sbjct: 79 DKKEK-KEKKEKKHKKEKKHKDSESSPVEPAANDSSSSTNYTQSSKLSSVSQSDIDKFLS 137
Query: 59 DGQID-ENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMI 117
D +I E+P P+ SF Q Q I +L F P+PIQ+ +WP L+SG D+I
Sbjct: 138 DNEITVEDPSSSSLRPILSFDQV-QLTSAITSKLSK--FDKPTPIQSVSWPFLLSGKDVI 194
Query: 118 GIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDY-K 176
G+A+TG+GKTFAF +PA+ ++ TT ++ SVL ++PTRELA QI + ++
Sbjct: 195 GVAETGSGKTFAFGVPAI--NNIITTGNTKTL--SVLCISPTRELALQIYDNLIELTADS 250
Query: 177 GLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRML 236
G+ V VYGG + Q+ KI+ ++++ATPGRL D ++ +I+L V+++VLDEADRML
Sbjct: 251 GVNCVAVYGGVSKDDQIRKIKTA-NVVVATPGRLVDLINDGAINLGKVNYLVLDEADRML 309
Query: 237 DLGFEPQINKTSIY--INPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLD-LAATH 293
+ GFE I KT I N RQT+M +ATW K+V+ +A +M +PVKV VG D L+A
Sbjct: 310 EKGFEEDI-KTIISNTSNSERQTLMFTATWPKEVRELANNFMNSPVKVTVGDRDELSANK 368
Query: 294 TVTQKIIILDEDEKKDWLMEFFD--NMDEERD-KVMVFMGRKASVSAMSSDLACQYRKSC 350
+TQ + ++++ +K+ L++ N +E D K+++F K S + + L
Sbjct: 369 RITQVVEVINKFDKEKKLIQLLRKYNANESSDNKILIFALYKKEASRIENFLKRNRFSVA 428
Query: 351 SLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRV 410
+++GDLSQ+ R AL SG + + +ATDVA+RGLD+P++ VIN FP IE+YVHR+
Sbjct: 429 AIHGDLSQQQRTAALSAFKSGQSNLLLATDVAARGLDIPNVKVVINLTFPLTIEDYVHRI 488
Query: 411 GRTGRAGKSGESITLMTRKDWSH 433
GRTGRAG G + TL T +D H
Sbjct: 489 GRTGRAGAKGTAHTLFT-EDEKH 510
Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
Identities = 165/424 (38%), Positives = 252/424 (59%)
Query: 529 DRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKN-------NDISVSVVT---S 578
D+KE+ K +E K K +D E + + P ++ N + +S S + S
Sbjct: 79 DKKEK-KEKKEKKHKKEKKHKDSESSPVEPAANDSSSSTNYTQSSKLSSVSQSDIDKFLS 137
Query: 579 DGQID-ENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMI 637
D +I E+P P+ SF Q Q I +L F P+PIQ+ +WP L+SG D+I
Sbjct: 138 DNEITVEDPSSSSLRPILSFDQV-QLTSAITSKLSK--FDKPTPIQSVSWPFLLSGKDVI 194
Query: 638 GIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDY-K 696
G+A+TG+GKTFAF +PA+ ++ TT ++ SVL ++PTRELA QI + ++
Sbjct: 195 GVAETGSGKTFAFGVPAI--NNIITTGNTKTL--SVLCISPTRELALQIYDNLIELTADS 250
Query: 697 GLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRML 756
G+ V VYGG + Q+ KI+ ++++ATPGRL D ++ +I+L V+++VLDEADRML
Sbjct: 251 GVNCVAVYGGVSKDDQIRKIKTA-NVVVATPGRLVDLINDGAINLGKVNYLVLDEADRML 309
Query: 757 DLGFEPQINKTSIY--INPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLD-LAATH 813
+ GFE I KT I N RQT+M +ATW K+V+ +A +M +PVKV VG D L+A
Sbjct: 310 EKGFEEDI-KTIISNTSNSERQTLMFTATWPKEVRELANNFMNSPVKVTVGDRDELSANK 368
Query: 814 TVTQKIIILDEDEKKDWLMEFFD--NMDEERD-KVMVFMGRKASVSAMSSDLACQYRKSC 870
+TQ + ++++ +K+ L++ N +E D K+++F K S + + L
Sbjct: 369 RITQVVEVINKFDKEKKLIQLLRKYNANESSDNKILIFALYKKEASRIENFLKRNRFSVA 428
Query: 871 SLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRV 930
+++GDLSQ+ R AL SG + + +ATDVA+RGLD+P++ VIN FP IE+YVHR+
Sbjct: 429 AIHGDLSQQQRTAALSAFKSGQSNLLLATDVAARGLDIPNVKVVINLTFPLTIEDYVHRI 488
Query: 931 GRTG 934
GRTG
Sbjct: 489 GRTG 492
>POMBASE|SPBC17D1.06 [details] [associations]
symbol:dbp3 "ATP-dependent RNA helicase Dbp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000027
"ribosomal large subunit assembly" evidence=ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPBC17D1.06 GO:GO:0005524
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S
PIR:T39709 RefSeq:NP_596388.1 ProteinModelPortal:Q10202
STRING:Q10202 PRIDE:Q10202 EnsemblFungi:SPBC17D1.06.1
GeneID:2540213 KEGG:spo:SPBC17D1.06 OMA:DRILVFC NextBio:20801345
Uniprot:Q10202
Length = 578
Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
Identities = 156/369 (42%), Positives = 228/369 (61%)
Query: 88 LRQ-LENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 146
LR+ L+N + P+PIQA WP L++G D++GIA+TG+GKT AF +PAL + + +
Sbjct: 178 LREGLKN--YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLS---D 232
Query: 147 ERAGPSVLVMAPTRELATQIEREVNK-IDYKGLKAVCVYGGKEIEPQLEKIR--EGCHIL 203
++ P VLV++PTRELA Q +N I LKAV VYGG P+ E+ R + ++
Sbjct: 233 NKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGA---PKSEQARAAKNASVI 289
Query: 204 IATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYI-----NPNRQTV 258
I TPGRL D ++ SID V ++VLDEADRMLD GFE I + N +RQTV
Sbjct: 290 IGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQTV 349
Query: 259 MTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFF--D 316
SATW + V+ +A ++ +PVK+ +GS +LAA+ +TQ + ILD+ K+ +++
Sbjct: 350 FFSATWPESVRALAATFLKDPVKITIGSDELAASQNITQIVEILDDPRSKERMLDNLLRK 409
Query: 317 NMDE--ERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYAR 374
++ + DK+++F+ K + + LA +Y ++GD+SQ R AL D SG
Sbjct: 410 HLSSGGKDDKILIFVLYKKEAARVEGTLARKYNV-VGIHGDMSQGARLQALNDFKSGKCP 468
Query: 375 ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHA 434
+ VATDVA+RGLD+P + VIN FP IE+YVHR+GRTGRA G +IT T +D SHA
Sbjct: 469 VLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFTPQDKSHA 528
Query: 435 HEIIPILEE 443
E++ +L +
Sbjct: 529 GELVNVLRQ 537
Score = 618 (222.6 bits), Expect = 4.8e-60, P = 4.8e-60
Identities = 144/340 (42%), Positives = 210/340 (61%)
Query: 608 LRQ-LENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 666
LR+ L+N + P+PIQA WP L++G D++GIA+TG+GKT AF +PAL + + +
Sbjct: 178 LREGLKN--YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLS---D 232
Query: 667 ERAGPSVLVMAPTRELATQIEREVNK-IDYKGLKAVCVYGGKELEPQLEKIR--EGCHIL 723
++ P VLV++PTRELA Q +N I LKAV VYGG P+ E+ R + ++
Sbjct: 233 NKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGA---PKSEQARAAKNASVI 289
Query: 724 IATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYI-----NPNRQTV 778
I TPGRL D ++ SID V ++VLDEADRMLD GFE I + N +RQTV
Sbjct: 290 IGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQTV 349
Query: 779 MTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFF--D 836
SATW + V+ +A ++ +PVK+ +GS +LAA+ +TQ + ILD+ K+ +++
Sbjct: 350 FFSATWPESVRALAATFLKDPVKITIGSDELAASQNITQIVEILDDPRSKERMLDNLLRK 409
Query: 837 NMDE--ERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYAR 894
++ + DK+++F+ K + + LA +Y ++GD+SQ R AL D SG
Sbjct: 410 HLSSGGKDDKILIFVLYKKEAARVEGTLARKYNV-VGIHGDMSQGARLQALNDFKSGKCP 468
Query: 895 ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
+ VATDVA+RGLD+P + VIN FP IE+YVHR+GRTG
Sbjct: 469 VLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTG 508
>UNIPROTKB|F1RSJ7 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:CU466402 EMBL:CU466386
Ensembl:ENSSSCT00000018821 Uniprot:F1RSJ7
Length = 941
Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
Identities = 141/374 (37%), Positives = 223/374 (59%)
Query: 71 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 130
P P +SF F +++ Q+ +T P+PIQ Q P+ +SG DMIGIA+TG+GKT AF
Sbjct: 249 PRPGSSFAH-FGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAF 307
Query: 131 LLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEI 189
+ P LIH + + GP +++ PTREL QI E + L++V VYGG +
Sbjct: 308 IWPMLIHI-MDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSM 366
Query: 190 EPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSI 249
Q + ++EG I++ TPGRL D V + + +L+ VS++V DEADRM D+GFE Q+ +
Sbjct: 367 WEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIAS 426
Query: 250 YINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKK- 308
++ P+RQT++ SAT+ K ++++A+ +++P++V G + A VTQ + IL K
Sbjct: 427 HVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIG-EANEDVTQIVEILHSGPSKW 485
Query: 309 DWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDI 368
+WL V++F+ +KA+ ++++L + L+GD+ Q +R + D
Sbjct: 486 NWLTRRLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDF 544
Query: 369 TSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTR 428
+ VATDVA+RGLD+P + VINYD I+ + HR+GRTGRAG+ G + TL+T
Sbjct: 545 KKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTP 604
Query: 429 KDWSHAHEIIPILE 442
KD + A +++ LE
Sbjct: 605 KDSNFAGDLVRNLE 618
Score = 624 (224.7 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
Identities = 129/346 (37%), Positives = 204/346 (58%)
Query: 591 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 650
P P +SF F +++ Q+ +T P+PIQ Q P+ +SG DMIGIA+TG+GKT AF
Sbjct: 249 PRPGSSFAH-FGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAF 307
Query: 651 LLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEL 709
+ P LIH + + GP +++ PTREL QI E + L++V VYGG +
Sbjct: 308 IWPMLIHI-MDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSM 366
Query: 710 EPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSI 769
Q + ++EG I++ TPGRL D V + + +L+ VS++V DEADRM D+GFE Q+ +
Sbjct: 367 WEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIAS 426
Query: 770 YINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKK- 828
++ P+RQT++ SAT+ K ++++A+ +++P++V G + A VTQ + IL K
Sbjct: 427 HVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIG-EANEDVTQIVEILHSGPSKW 485
Query: 829 DWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDI 888
+WL V++F+ +KA+ ++++L + L+GD+ Q +R + D
Sbjct: 486 NWLTRRLVEFTSS-GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDF 544
Query: 889 TSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
+ VATDVA+RGLD+P + VINYD I+ + HR+GRTG
Sbjct: 545 KKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTG 590
Score = 38 (18.4 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 512 GRHIDPEPTMEELMALSDRKERDKWAREPKIIKNVYKEDPEVANM 556
G I P + + + D E D+ E KII N E + +N+
Sbjct: 187 GNPIAPSKKIIDPLPPIDHSELDRNYFEIKIIYNTKDECIDASNL 231
>DICTYBASE|DDB_G0275443 [details] [associations]
symbol:helB1 "putative RNA splicing factor"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275443 GO:GO:0005524
GO:GO:0006397 GenomeReviews:CM000151_GR GO:GO:0005681 GO:GO:0003676
EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000375 HSSP:P09052 EMBL:X81823 RefSeq:XP_643509.1
ProteinModelPortal:Q553B1 PRIDE:Q553B1 EnsemblProtists:DDB0191329
GeneID:8620090 KEGG:ddi:DDB_G0275443 KO:K12811 OMA:SVVAPEI
ProtClustDB:CLSZ2500419 Uniprot:Q553B1
Length = 1151
Score = 685 (246.2 bits), Expect = 1.3e-66, P = 1.3e-66
Identities = 161/428 (37%), Positives = 242/428 (56%)
Query: 24 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQA-FQ 82
KN Y E P +ANMT +V FR +++ V + D P P+ S+ QA
Sbjct: 471 KNFYIEVPVLANMTETEVLDFR---SELGVKITGKD----------CPKPIQSWAQAGLT 517
Query: 83 HYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQT 142
+L L+ + P+ IQAQ P +M+G D+IGIA+TG+GKT AFLLP + H+
Sbjct: 518 EKVHLL--LKKFQYEKPTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFLLP--MFRHILA 573
Query: 143 TPISERA-GPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGC 200
P S G L+M+PTRELA QI E K GL+ CVYGG I Q+ +++ G
Sbjct: 574 QPKSAPGEGMIALIMSPTRELALQIHVECKKFSKVLGLRTACVYGGASISEQIAELKRGA 633
Query: 201 HILIATPGRLNDFV---SRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQT 257
I++ TPGR+ D + +R +L+ V+F+VLDEADRM D+GF PQIN I P+RQT
Sbjct: 634 DIVVCTPGRMIDILCANNRRITNLRRVTFLVLDEADRMFDMGFGPQINCIVDSIRPDRQT 693
Query: 258 VMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDN 317
+M SAT+ V+ VAKK + P+++ G + ++ + Q + + + + L+E +
Sbjct: 694 IMFSATFPPKVENVAKKILNKPLEIIAGGRSIVSSD-IEQFVEVRPTETRFRRLIELL-S 751
Query: 318 MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICV 377
+ + ++++F R+ + + L+ + SL+G Q DR+ + D + I +
Sbjct: 752 IWYHKGQILIFTNRQETTDNLYRQLSNSQYQCLSLHGSKDQTDRDETISDFKNKVKTILI 811
Query: 378 ATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEI 437
AT +ASRGLD+ DL V+N+D P H+E+YVHRVGRTGRAG G + T +T + + I
Sbjct: 812 ATPLASRGLDIKDLNLVVNFDCPDHLEDYVHRVGRTGRAGNRGTAYTFITPDEERFSSSI 871
Query: 438 IPILEEGG 445
I LE+ G
Sbjct: 872 IKALEQSG 879
Score = 636 (228.9 bits), Expect = 1.2e-60, Sum P(3) = 1.2e-60
Identities = 149/397 (37%), Positives = 226/397 (56%)
Query: 544 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQA-FQ 602
KN Y E P +ANMT +V FR +++ V + D P P+ S+ QA
Sbjct: 471 KNFYIEVPVLANMTETEVLDFR---SELGVKITGKD----------CPKPIQSWAQAGLT 517
Query: 603 HYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQT 662
+L L+ + P+ IQAQ P +M+G D+IGIA+TG+GKT AFLLP + H+
Sbjct: 518 EKVHLL--LKKFQYEKPTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFLLP--MFRHILA 573
Query: 663 TPISERA-GPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGC 720
P S G L+M+PTRELA QI E K GL+ CVYGG + Q+ +++ G
Sbjct: 574 QPKSAPGEGMIALIMSPTRELALQIHVECKKFSKVLGLRTACVYGGASISEQIAELKRGA 633
Query: 721 HILIATPGRLNDFV---SRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQT 777
I++ TPGR+ D + +R +L+ V+F+VLDEADRM D+GF PQIN I P+RQT
Sbjct: 634 DIVVCTPGRMIDILCANNRRITNLRRVTFLVLDEADRMFDMGFGPQINCIVDSIRPDRQT 693
Query: 778 VMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDN 837
+M SAT+ V+ VAKK + P+++ G + ++ + Q + + + + L+E +
Sbjct: 694 IMFSATFPPKVENVAKKILNKPLEIIAGGRSIVSSD-IEQFVEVRPTETRFRRLIELL-S 751
Query: 838 MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICV 897
+ + ++++F R+ + + L+ + SL+G Q DR+ + D + I +
Sbjct: 752 IWYHKGQILIFTNRQETTDNLYRQLSNSQYQCLSLHGSKDQTDRDETISDFKNKVKTILI 811
Query: 898 ATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
AT +ASRGLD+ DL V+N+D P H+E+YVHRVGRTG
Sbjct: 812 ATPLASRGLDIKDLNLVVNFDCPDHLEDYVHRVGRTG 848
Score = 46 (21.3 bits), Expect = 1.2e-60, Sum P(3) = 1.2e-60
Identities = 11/52 (21%), Positives = 20/52 (38%)
Query: 37 TPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEIL 88
+P Q + ++ ++ + Q + P Q P P K F PE +
Sbjct: 93 SPPQQQQQQQNSSYVPSQPPQQQTQTQQQPHIQAPPPAKPRKSRFDQAPETI 144
Score = 41 (19.5 bits), Expect = 1.2e-60, Sum P(3) = 1.2e-60
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 292 THTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSD 341
T T+ Q I +ED+ D L + +N+++E + + +K+ S M D
Sbjct: 388 TTTIKQSI---EEDDDIDPLDAYMENLNKEANLNL----KKSKTSQMIDD 430
>GENEDB_PFALCIPARUM|PFL1310c [details] [associations]
symbol:PFL1310c "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0016070 "RNA
metabolic process" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014188 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_001350668.1
ProteinModelPortal:Q8I5E7 PRIDE:Q8I5E7
EnsemblProtists:PFL1310c:mRNA GeneID:811314 KEGG:pfa:PFL1310c
EuPathDB:PlasmoDB:PF3D7_1227100 ProtClustDB:CLSZ2500975
Uniprot:Q8I5E7
Length = 742
Score = 547 (197.6 bits), Expect = 1.4e-66, Sum P(2) = 1.4e-66
Identities = 114/285 (40%), Positives = 176/285 (61%)
Query: 146 SERAGPSV-LVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEIEPQLEKIREGCHIL 203
SERA + L++ PTREL Q+ E+ + +K+V VYGG Q+ +++G I+
Sbjct: 422 SERASDTYGLILLPTRELCLQVLDEIKSFEKNLPIKSVAVYGGVPKYYQINNLKKGADII 481
Query: 204 IATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSAT 263
+ATPGRL DF+ +I+L +VV+DEADR+LD+GFE Q+ K +N N+Q + +AT
Sbjct: 482 VATPGRLLDFLENGNINLLKCIYVVIDEADRLLDMGFEKQLRKIMTQVNKNKQLLFLTAT 541
Query: 264 WNKDVQRVAKKYM-VNPVKVNVGSLDLAATHTVTQKIIILDE-DEKK---DWLMEFFDNM 318
W + V+++A + +PVK+ +G +L A + Q +II D KK DWL E ++N
Sbjct: 542 WPEQVRKLAYDFCSYDPVKIQIGKNELTANKNIEQNVIISSSIDMKKKLLDWLKENYEN- 600
Query: 319 DEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVA 378
+K+++F K + + +L + S++GD Q +R+ L + + I VA
Sbjct: 601 ----NKILIFCDTKRNCDNLCKELRYHQYNALSIHGDKQQRERDRILNNYKTDRCNILVA 656
Query: 379 TDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESI 423
TDVASRGLD+ +++ VINYD P+ IE+Y+HR+GRTGRAGK G+SI
Sbjct: 657 TDVASRGLDIKNISVVINYDIPNTIEDYIHRIGRTGRAGKKGKSI 701
Score = 513 (185.6 bits), Expect = 4.3e-60, Sum P(3) = 4.3e-60
Identities = 107/276 (38%), Positives = 168/276 (60%)
Query: 666 SERAGPSV-LVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKELEPQLEKIREGCHIL 723
SERA + L++ PTREL Q+ E+ + +K+V VYGG Q+ +++G I+
Sbjct: 422 SERASDTYGLILLPTRELCLQVLDEIKSFEKNLPIKSVAVYGGVPKYYQINNLKKGADII 481
Query: 724 IATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSAT 783
+ATPGRL DF+ +I+L +VV+DEADR+LD+GFE Q+ K +N N+Q + +AT
Sbjct: 482 VATPGRLLDFLENGNINLLKCIYVVIDEADRLLDMGFEKQLRKIMTQVNKNKQLLFLTAT 541
Query: 784 WNKDVQRVAKKYM-VNPVKVNVGSLDLAATHTVTQKIIILDE-DEKK---DWLMEFFDNM 838
W + V+++A + +PVK+ +G +L A + Q +II D KK DWL E ++N
Sbjct: 542 WPEQVRKLAYDFCSYDPVKIQIGKNELTANKNIEQNVIISSSIDMKKKLLDWLKENYEN- 600
Query: 839 DEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVA 898
+K+++F K + + +L + S++GD Q +R+ L + + I VA
Sbjct: 601 ----NKILIFCDTKRNCDNLCKELRYHQYNALSIHGDKQQRERDRILNNYKTDRCNILVA 656
Query: 899 TDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
TDVASRGLD+ +++ VINYD P+ IE+Y+HR+GRTG
Sbjct: 657 TDVASRGLDIKNISVVINYDIPNTIEDYIHRIGRTG 692
Score = 161 (61.7 bits), Expect = 1.4e-66, Sum P(2) = 1.4e-66
Identities = 40/103 (38%), Positives = 55/103 (53%)
Query: 35 NMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENL 94
N+ EQ K+ DI + ++ I N D I N + F H IL L N
Sbjct: 252 NLNNEQTNCLSKE--DIQNELKKNNIYI--NKDGIIHNIINKFSDVCFH-ESILNYLNN- 305
Query: 95 SFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIH 137
F+ P+ IQ WPI +SG D+IG+A+TG+GKT AF+LP +H
Sbjct: 306 KFSEPTAIQKITWPIALSGKDLIGVAETGSGKTLAFVLPCFMH 348
Score = 161 (61.7 bits), Expect = 4.3e-60, Sum P(3) = 4.3e-60
Identities = 40/103 (38%), Positives = 55/103 (53%)
Query: 555 NMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENL 614
N+ EQ K+ DI + ++ I N D I N + F H IL L N
Sbjct: 252 NLNNEQTNCLSKE--DIQNELKKNNIYI--NKDGIIHNIINKFSDVCFH-ESILNYLNN- 305
Query: 615 SFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIH 657
F+ P+ IQ WPI +SG D+IG+A+TG+GKT AF+LP +H
Sbjct: 306 KFSEPTAIQKITWPIALSGKDLIGVAETGSGKTLAFVLPCFMH 348
Score = 41 (19.5 bits), Expect = 4.3e-60, Sum P(3) = 4.3e-60
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 281 KVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFF------DNMDEERD 323
K N L+ TH V K I E++ K EF+ D+MD + D
Sbjct: 50 KDNCAILNRGQTHVVGIKKNICTENKVKQQDGEFYMNQRVPDDMDNDMD 98
>TAIR|locus:2076436 [details] [associations]
symbol:AT3G58570 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL137082 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 OMA:KYERGGN EMBL:AY049285
EMBL:BT002731 EMBL:AY088132 IPI:IPI00518094 PIR:T45677
RefSeq:NP_191416.1 UniGene:At.831 ProteinModelPortal:Q9M2F9
SMR:Q9M2F9 STRING:Q9M2F9 PaxDb:Q9M2F9 PRIDE:Q9M2F9
EnsemblPlants:AT3G58570.1 GeneID:825026 KEGG:ath:AT3G58570
GeneFarm:1031 TAIR:At3g58570 InParanoid:Q9M2F9 PhylomeDB:Q9M2F9
ProtClustDB:CLSN2915471 Genevestigator:Q9M2F9 GermOnline:AT3G58570
Uniprot:Q9M2F9
Length = 646
Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
Identities = 149/421 (35%), Positives = 243/421 (57%)
Query: 43 AFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILR-QLENLSFTTPSP 101
A ++ N + D I+ + D +P PV +F + E L ++ + P+P
Sbjct: 115 AVNEQENTVINFEAYEDIPIETSGD-NVPPPVNTFAEI--DLGEALNLNIQRCKYVKPTP 171
Query: 102 IQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAG-----PSVLVM 156
+Q A PIL +G D++ AQTG+GKT AF P +I ++ I G P +++
Sbjct: 172 VQRNAIPILAAGRDLMACAQTGSGKTAAFCFP-IISGIMKDQHIERPRGVRGVYPLAVIL 230
Query: 157 APTRELATQIEREVNKIDYK-GLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVS 215
+PTRELA QI E K Y+ G+K V YGG + Q+ ++ G IL+ATPGRLND +
Sbjct: 231 SPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLE 290
Query: 216 RASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYIN---PN-RQTVMTSATWNKDVQRV 271
R + L+ V F+ LDEADRMLD+GFEPQI K ++ P RQT++ SAT+ +++QR+
Sbjct: 291 RGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPREIQRL 350
Query: 272 AKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFF----DNMDEERDKV-M 326
A ++ N + + VG + ++T + Q++ + + +K+ LM+ +N ++ + + +
Sbjct: 351 ASDFLSNYIFLAVGRVG-SSTDLIVQRVEFVHDSDKRSHLMDLLHAQRENGNQGKQALTL 409
Query: 327 VFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGL 386
VF+ K ++ + L + +++GD SQ++RE+AL +G I VATDVA+RGL
Sbjct: 410 VFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGL 469
Query: 387 DVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEGGH 446
D+P + HV+N+D P+ I++YVHR+GRTGRAG SG + + + A + +++E
Sbjct: 470 DIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLATAFFNDNNTTMAKPLAELMQEANQ 529
Query: 447 E 447
E
Sbjct: 530 E 530
Score = 636 (228.9 bits), Expect = 3.7e-62, P = 3.7e-62
Identities = 141/388 (36%), Positives = 228/388 (58%)
Query: 563 AFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILR-QLENLSFTTPSP 621
A ++ N + D I+ + D +P PV +F + E L ++ + P+P
Sbjct: 115 AVNEQENTVINFEAYEDIPIETSGD-NVPPPVNTFAEI--DLGEALNLNIQRCKYVKPTP 171
Query: 622 IQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAG-----PSVLVM 676
+Q A PIL +G D++ AQTG+GKT AF P +I ++ I G P +++
Sbjct: 172 VQRNAIPILAAGRDLMACAQTGSGKTAAFCFP-IISGIMKDQHIERPRGVRGVYPLAVIL 230
Query: 677 APTRELATQIEREVNKIDYK-GLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVS 735
+PTRELA QI E K Y+ G+K V YGG + Q+ ++ G IL+ATPGRLND +
Sbjct: 231 SPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLE 290
Query: 736 RASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYIN---PN-RQTVMTSATWNKDVQRV 791
R + L+ V F+ LDEADRMLD+GFEPQI K ++ P RQT++ SAT+ +++QR+
Sbjct: 291 RGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPREIQRL 350
Query: 792 AKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFF----DNMDEERDKV-M 846
A ++ N + + VG + ++T + Q++ + + +K+ LM+ +N ++ + + +
Sbjct: 351 ASDFLSNYIFLAVGRVG-SSTDLIVQRVEFVHDSDKRSHLMDLLHAQRENGNQGKQALTL 409
Query: 847 VFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGL 906
VF+ K ++ + L + +++GD SQ++RE+AL +G I VATDVA+RGL
Sbjct: 410 VFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGL 469
Query: 907 DVPDLTHVINYDFPSHIEEYVHRVGRTG 934
D+P + HV+N+D P+ I++YVHR+GRTG
Sbjct: 470 DIPHVAHVVNFDLPNDIDDYVHRIGRTG 497
>ZFIN|ZDB-GENE-990415-272 [details] [associations]
symbol:vasa "vasa homolog" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008406 "gonad development" evidence=IEP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-990415-272 GO:GO:0005524 GO:GO:0008406
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HSSP:Q58083 HOGENOM:HOG000268804 HOVERGEN:HBG015893 KO:K13982
EMBL:AB005147 IPI:IPI00495861 RefSeq:NP_571132.1 UniGene:Dr.559
ProteinModelPortal:O42107 SMR:O42107 STRING:O42107 PRIDE:O42107
GeneID:30263 KEGG:dre:30263 CTD:30263 InParanoid:O42107
NextBio:20806710 ArrayExpress:O42107 Bgee:O42107 Uniprot:O42107
Length = 716
Score = 652 (234.6 bits), Expect = 3.7e-66, Sum P(2) = 3.7e-66
Identities = 148/402 (36%), Positives = 229/402 (56%)
Query: 71 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 130
P + +F++A + + + + P+P+Q PI+ +G D++ AQTG+GKT AF
Sbjct: 273 PKAIMTFEEAGL-CDSLSKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAF 331
Query: 131 LLPAL---IHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGG 186
LLP L + + + SE P +++APTREL QI E K Y ++ V VYGG
Sbjct: 332 LLPILQRFMTDGVAASKFSEIQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGG 391
Query: 187 KEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINK 246
+ ++ +GC++L ATPGRL+D + R I L V ++VLDEADRMLD+GFEP++ K
Sbjct: 392 INTGYTIREVLKGCNVLCATPGRLHDLIGRGKIGLSKVRYLVLDEADRMLDMGFEPEMRK 451
Query: 247 T----SIYINPNRQTVMTSATWNKDVQRVAKKYM-VNPVKVNVGSLDLAATHTVTQKIII 301
+ RQT+M SAT+ +D+QR+A ++ V+ + + VG + A V Q ++
Sbjct: 452 LVASPGMPSKEERQTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVG-GACSDVEQTVVQ 510
Query: 302 LDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSC-SLYGDLSQED 360
+D+ K+D L+E ER MVF+ K S +++ L CQ + S S++GD Q +
Sbjct: 511 VDQYSKRDQLLELLRATGNER--TMVFVETKRSADFIATFL-CQEKISTTSIHGDREQRE 567
Query: 361 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSG 420
RE AL D G+ + VAT VA+RGLD+ + HV+N+D PS I+EYVHR+GRTGR G +G
Sbjct: 568 REKALSDFRLGHCPVLVATSVAARGLDIEQVQHVVNFDMPSSIDEYVHRIGRTGRCGNTG 627
Query: 421 ESITLMT-RKDWSHAHEIIPILEEGGHESYMIWRRDSRIALH 461
+++ D A ++ +L G + W + + H
Sbjct: 628 RAVSFFNPESDTPLARSLVKVLS-GAQQVVPKWLEEVAFSAH 668
Score = 616 (221.9 bits), Expect = 7.8e-64, Sum P(3) = 7.8e-64
Identities = 139/354 (39%), Positives = 210/354 (59%)
Query: 591 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 650
P + +F++A + + + + P+P+Q PI+ +G D++ AQTG+GKT AF
Sbjct: 273 PKAIMTFEEAGL-CDSLSKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAF 331
Query: 651 LLPAL---IHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGG 706
LLP L + + + SE P +++APTREL QI E K Y ++ V VYGG
Sbjct: 332 LLPILQRFMTDGVAASKFSEIQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGG 391
Query: 707 KELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINK 766
+ ++ +GC++L ATPGRL+D + R I L V ++VLDEADRMLD+GFEP++ K
Sbjct: 392 INTGYTIREVLKGCNVLCATPGRLHDLIGRGKIGLSKVRYLVLDEADRMLDMGFEPEMRK 451
Query: 767 T----SIYINPNRQTVMTSATWNKDVQRVAKKYM-VNPVKVNVGSLDLAATHTVTQKIII 821
+ RQT+M SAT+ +D+QR+A ++ V+ + + VG + A V Q ++
Sbjct: 452 LVASPGMPSKEERQTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVG-GACSDVEQTVVQ 510
Query: 822 LDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSC-SLYGDLSQED 880
+D+ K+D L+E ER MVF+ K S +++ L CQ + S S++GD Q +
Sbjct: 511 VDQYSKRDQLLELLRATGNER--TMVFVETKRSADFIATFL-CQEKISTTSIHGDREQRE 567
Query: 881 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
RE AL D G+ + VAT VA+RGLD+ + HV+N+D PS I+EYVHR+GRTG
Sbjct: 568 REKALSDFRLGHCPVLVATSVAARGLDIEQVQHVVNFDMPSSIDEYVHRIGRTG 621
Score = 39 (18.8 bits), Expect = 3.7e-66, Sum P(2) = 3.7e-66
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 44 FRKKNNDISVSVVTSDGQID----ENPDFQI----PNPVTSFKQAFQHY 84
FR +N ++ V T+D ++D EN ++ P P F HY
Sbjct: 204 FRGRNEEVFSKVTTAD-KLDQEGSENAGPKVVYVPPPPPEEESSIFSHY 251
Score = 39 (18.8 bits), Expect = 9.8e-62, Sum P(2) = 9.8e-62
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 564 FRKKNNDISVSVVTSDGQID----ENPDFQI----PNPVTSFKQAFQHY 604
FR +N ++ V T+D ++D EN ++ P P F HY
Sbjct: 204 FRGRNEEVFSKVTTAD-KLDQEGSENAGPKVVYVPPPPPEEESSIFSHY 251
Score = 37 (18.1 bits), Expect = 7.8e-64, Sum P(3) = 7.8e-64
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 146 SERAGPSVLVMAP 158
SE AGP V+ + P
Sbjct: 226 SENAGPKVVYVPP 238
Score = 37 (18.1 bits), Expect = 7.8e-64, Sum P(3) = 7.8e-64
Identities = 14/61 (22%), Positives = 25/61 (40%)
Query: 514 HIDPEPTMEELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISV 573
++ P P EE S + + I+ +V +P A MT E+ + ++S
Sbjct: 235 YVPPPPPEEESSIFSHYATGINFDKYDDILVDVSGSNPPKAIMTFEEAGLCDSLSKNVSK 294
Query: 574 S 574
S
Sbjct: 295 S 295
>CGD|CAL0005725 [details] [associations]
symbol:PRP5 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
Identities = 159/440 (36%), Positives = 257/440 (58%)
Query: 24 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQH 83
K Y+E E++ ++ EQVE R+ ++I V + D +P P+ K +
Sbjct: 254 KVFYREAYELSALSDEQVELIRQDLDNIKV----------KGTD--VPRPI--LKWSHLA 299
Query: 84 YPEILRQL--ENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQ 141
P L + + L F PS IQ+QA P ++SG D+IGIA+TG+GKT +++LP L H+Q
Sbjct: 300 LPTNLSSVIHDKLKFEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPML--RHIQ 357
Query: 142 TTPIS-ERAGPSVLVMAPTRELATQIEREVNKIDYKG--LKAVCVYGGKEIEPQLEKIRE 198
S + GP L+++PTRELA QIE+E+ + L+ C YGG IE Q+ ++++
Sbjct: 358 DQQFSKDNQGPIGLILSPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKK 417
Query: 199 GCHILIATPGRLNDFVSRAS---IDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNR 255
G I++ TPGR+ D ++ S ++LK +FVVLDEADRM DLGFEPQ+NK I P+R
Sbjct: 418 GVEIIVGTPGRVIDLLAANSGRVLNLKRCTFVVLDEADRMFDLGFEPQVNKILTQIRPDR 477
Query: 256 QTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD---EDEKK---- 308
QTV+ SAT+ + ++ +AK+ + +PV + VG + + A + Q++++ + E++ K
Sbjct: 478 QTVLFSATFPRKMETLAKQILTDPVVIIVGGISVVAPE-IKQEVVLFETSAEEQDKYKQQ 536
Query: 309 --DWLMEFFDNMDEER--DKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIA 364
+ L + N E K++VF ++ + ++L + +++G Q DR+ A
Sbjct: 537 RVEKLHDILTNYQIEHPDSKILVFTEKQNDADELVANLLSNKYPAIAIHGGKDQMDRKYA 596
Query: 365 LEDITS--GYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGES 422
+++ S I +AT +A+RGLDV +L VIN+D P+H+E+YVHRVGRTGRAG G +
Sbjct: 597 IKEFASMDSGINILIATSIAARGLDVRNLGLVINFDPPNHMEDYVHRVGRTGRAGAKGNA 656
Query: 423 ITLMTRKDWSHAHEIIPILE 442
IT ++ ++ L+
Sbjct: 657 ITFVSSSQPKEVFNLVKALK 676
Score = 636 (228.9 bits), Expect = 1.4e-63, Sum P(3) = 1.4e-63
Identities = 151/412 (36%), Positives = 244/412 (59%)
Query: 544 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQH 603
K Y+E E++ ++ EQVE R+ ++I V + D +P P+ K +
Sbjct: 254 KVFYREAYELSALSDEQVELIRQDLDNIKV----------KGTD--VPRPI--LKWSHLA 299
Query: 604 YPEILRQL--ENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQ 661
P L + + L F PS IQ+QA P ++SG D+IGIA+TG+GKT +++LP L H+Q
Sbjct: 300 LPTNLSSVIHDKLKFEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPML--RHIQ 357
Query: 662 TTPIS-ERAGPSVLVMAPTRELATQIEREVNKIDYKG--LKAVCVYGGKELEPQLEKIRE 718
S + GP L+++PTRELA QIE+E+ + L+ C YGG +E Q+ ++++
Sbjct: 358 DQQFSKDNQGPIGLILSPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKK 417
Query: 719 GCHILIATPGRLNDFVSRAS---IDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNR 775
G I++ TPGR+ D ++ S ++LK +FVVLDEADRM DLGFEPQ+NK I P+R
Sbjct: 418 GVEIIVGTPGRVIDLLAANSGRVLNLKRCTFVVLDEADRMFDLGFEPQVNKILTQIRPDR 477
Query: 776 QTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD---EDEKK---- 828
QTV+ SAT+ + ++ +AK+ + +PV + VG + + A + Q++++ + E++ K
Sbjct: 478 QTVLFSATFPRKMETLAKQILTDPVVIIVGGISVVAPE-IKQEVVLFETSAEEQDKYKQQ 536
Query: 829 --DWLMEFFDNMDEER--DKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIA 884
+ L + N E K++VF ++ + ++L + +++G Q DR+ A
Sbjct: 537 RVEKLHDILTNYQIEHPDSKILVFTEKQNDADELVANLLSNKYPAIAIHGGKDQMDRKYA 596
Query: 885 LEDITS--GYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
+++ S I +AT +A+RGLDV +L VIN+D P+H+E+YVHRVGRTG
Sbjct: 597 IKEFASMDSGINILIATSIAARGLDVRNLGLVINFDPPNHMEDYVHRVGRTG 648
Score = 45 (20.9 bits), Expect = 1.4e-63, Sum P(3) = 1.4e-63
Identities = 19/69 (27%), Positives = 31/69 (44%)
Query: 303 DEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDRE 362
DED++K+ F E D++ K S + LA R+S L D ++ ++
Sbjct: 130 DEDDRKNSHRPVFKKPSLEYDEISEHQNDKESEDELDVFLA-SIRES-ELKSDNTKAEK- 186
Query: 363 IALEDITSG 371
A+E I G
Sbjct: 187 -AIESIPEG 194
Score = 38 (18.4 bits), Expect = 1.4e-63, Sum P(3) = 1.4e-63
Identities = 15/60 (25%), Positives = 26/60 (43%)
Query: 215 SRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKK 274
++AS LK V + ++ +L E ++ K + RQ ++VQ AKK
Sbjct: 5 NQASTALKNSGQEVKNNTNQTSELSKEEKLRKRREQLELWRQKKQQQQQEQEEVQNKAKK 64
>UNIPROTKB|Q5ADL0 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
Identities = 159/440 (36%), Positives = 257/440 (58%)
Query: 24 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQH 83
K Y+E E++ ++ EQVE R+ ++I V + D +P P+ K +
Sbjct: 254 KVFYREAYELSALSDEQVELIRQDLDNIKV----------KGTD--VPRPI--LKWSHLA 299
Query: 84 YPEILRQL--ENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQ 141
P L + + L F PS IQ+QA P ++SG D+IGIA+TG+GKT +++LP L H+Q
Sbjct: 300 LPTNLSSVIHDKLKFEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPML--RHIQ 357
Query: 142 TTPIS-ERAGPSVLVMAPTRELATQIEREVNKIDYKG--LKAVCVYGGKEIEPQLEKIRE 198
S + GP L+++PTRELA QIE+E+ + L+ C YGG IE Q+ ++++
Sbjct: 358 DQQFSKDNQGPIGLILSPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKK 417
Query: 199 GCHILIATPGRLNDFVSRAS---IDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNR 255
G I++ TPGR+ D ++ S ++LK +FVVLDEADRM DLGFEPQ+NK I P+R
Sbjct: 418 GVEIIVGTPGRVIDLLAANSGRVLNLKRCTFVVLDEADRMFDLGFEPQVNKILTQIRPDR 477
Query: 256 QTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD---EDEKK---- 308
QTV+ SAT+ + ++ +AK+ + +PV + VG + + A + Q++++ + E++ K
Sbjct: 478 QTVLFSATFPRKMETLAKQILTDPVVIIVGGISVVAPE-IKQEVVLFETSAEEQDKYKQQ 536
Query: 309 --DWLMEFFDNMDEER--DKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIA 364
+ L + N E K++VF ++ + ++L + +++G Q DR+ A
Sbjct: 537 RVEKLHDILTNYQIEHPDSKILVFTEKQNDADELVANLLSNKYPAIAIHGGKDQMDRKYA 596
Query: 365 LEDITS--GYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGES 422
+++ S I +AT +A+RGLDV +L VIN+D P+H+E+YVHRVGRTGRAG G +
Sbjct: 597 IKEFASMDSGINILIATSIAARGLDVRNLGLVINFDPPNHMEDYVHRVGRTGRAGAKGNA 656
Query: 423 ITLMTRKDWSHAHEIIPILE 442
IT ++ ++ L+
Sbjct: 657 ITFVSSSQPKEVFNLVKALK 676
Score = 636 (228.9 bits), Expect = 1.4e-63, Sum P(3) = 1.4e-63
Identities = 151/412 (36%), Positives = 244/412 (59%)
Query: 544 KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQH 603
K Y+E E++ ++ EQVE R+ ++I V + D +P P+ K +
Sbjct: 254 KVFYREAYELSALSDEQVELIRQDLDNIKV----------KGTD--VPRPI--LKWSHLA 299
Query: 604 YPEILRQL--ENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQ 661
P L + + L F PS IQ+QA P ++SG D+IGIA+TG+GKT +++LP L H+Q
Sbjct: 300 LPTNLSSVIHDKLKFEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPML--RHIQ 357
Query: 662 TTPIS-ERAGPSVLVMAPTRELATQIEREVNKIDYKG--LKAVCVYGGKELEPQLEKIRE 718
S + GP L+++PTRELA QIE+E+ + L+ C YGG +E Q+ ++++
Sbjct: 358 DQQFSKDNQGPIGLILSPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKK 417
Query: 719 GCHILIATPGRLNDFVSRAS---IDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNR 775
G I++ TPGR+ D ++ S ++LK +FVVLDEADRM DLGFEPQ+NK I P+R
Sbjct: 418 GVEIIVGTPGRVIDLLAANSGRVLNLKRCTFVVLDEADRMFDLGFEPQVNKILTQIRPDR 477
Query: 776 QTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD---EDEKK---- 828
QTV+ SAT+ + ++ +AK+ + +PV + VG + + A + Q++++ + E++ K
Sbjct: 478 QTVLFSATFPRKMETLAKQILTDPVVIIVGGISVVAPE-IKQEVVLFETSAEEQDKYKQQ 536
Query: 829 --DWLMEFFDNMDEER--DKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIA 884
+ L + N E K++VF ++ + ++L + +++G Q DR+ A
Sbjct: 537 RVEKLHDILTNYQIEHPDSKILVFTEKQNDADELVANLLSNKYPAIAIHGGKDQMDRKYA 596
Query: 885 LEDITS--GYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
+++ S I +AT +A+RGLDV +L VIN+D P+H+E+YVHRVGRTG
Sbjct: 597 IKEFASMDSGINILIATSIAARGLDVRNLGLVINFDPPNHMEDYVHRVGRTG 648
Score = 45 (20.9 bits), Expect = 1.4e-63, Sum P(3) = 1.4e-63
Identities = 19/69 (27%), Positives = 31/69 (44%)
Query: 303 DEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDRE 362
DED++K+ F E D++ K S + LA R+S L D ++ ++
Sbjct: 130 DEDDRKNSHRPVFKKPSLEYDEISEHQNDKESEDELDVFLA-SIRES-ELKSDNTKAEK- 186
Query: 363 IALEDITSG 371
A+E I G
Sbjct: 187 -AIESIPEG 194
Score = 38 (18.4 bits), Expect = 1.4e-63, Sum P(3) = 1.4e-63
Identities = 15/60 (25%), Positives = 26/60 (43%)
Query: 215 SRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKK 274
++AS LK V + ++ +L E ++ K + RQ ++VQ AKK
Sbjct: 5 NQASTALKNSGQEVKNNTNQTSELSKEEKLRKRREQLELWRQKKQQQQQEQEEVQNKAKK 64
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
Identities = 146/355 (41%), Positives = 219/355 (61%)
Query: 77 FKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALI 136
FK +F +P + + + TP+PIQAQA P +M+G D++G+AQTGTGKT AF LP ++
Sbjct: 3 FK-SFGFHPAVATGIAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALP-IL 60
Query: 137 HTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGGKEIEPQLEK 195
H LQ ER LV+APTRELA QI + + L++V VYGG + PQ++K
Sbjct: 61 H-RLQQ---GERGRVRALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQK 116
Query: 196 IREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNR 255
++ G +++A PGRL D +++ +IDL + +VLDEAD+M D+GF P I + ++ P R
Sbjct: 117 LKAGAEVVVACPGRLLDHIAQGTIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLPPRR 176
Query: 256 QTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFF 315
QT++ SAT D++ +A+ +V+PV V VG++ A TV + +++ K L+E
Sbjct: 177 QTLLFSATMPIDIRTLAQDILVDPVTVQVGTV--APAVTVAHALYPVEQHLKTPLLLELL 234
Query: 316 DNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARI 375
+ D E V++F K + L ++ SL G+LSQ R+ AL+ G +I
Sbjct: 235 RHTDTE--SVLIFTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQI 292
Query: 376 CVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430
VATD+A+RG+DV ++HVINYD P E Y+HR+GRTGRA +SG++ TL+T D
Sbjct: 293 LVATDIAARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTLVTSDD 347
Score = 627 (225.8 bits), Expect = 4.4e-61, P = 4.4e-61
Identities = 138/339 (40%), Positives = 207/339 (61%)
Query: 597 FKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALI 656
FK +F +P + + + TP+PIQAQA P +M+G D++G+AQTGTGKT AF LP ++
Sbjct: 3 FK-SFGFHPAVATGIAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALP-IL 60
Query: 657 HTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGGKELEPQLEK 715
H LQ ER LV+APTRELA QI + + L++V VYGG + PQ++K
Sbjct: 61 H-RLQQ---GERGRVRALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQK 116
Query: 716 IREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNR 775
++ G +++A PGRL D +++ +IDL + +VLDEAD+M D+GF P I + ++ P R
Sbjct: 117 LKAGAEVVVACPGRLLDHIAQGTIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLPPRR 176
Query: 776 QTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFF 835
QT++ SAT D++ +A+ +V+PV V VG++ A TV + +++ K L+E
Sbjct: 177 QTLLFSATMPIDIRTLAQDILVDPVTVQVGTV--APAVTVAHALYPVEQHLKTPLLLELL 234
Query: 836 DNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARI 895
+ D E V++F K + L ++ SL G+LSQ R+ AL+ G +I
Sbjct: 235 RHTDTE--SVLIFTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQI 292
Query: 896 CVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
VATD+A+RG+DV ++HVINYD P E Y+HR+GRTG
Sbjct: 293 LVATDIAARGIDVSQVSHVINYDIPDTAEAYIHRIGRTG 331
>DICTYBASE|DDB_G0283661 [details] [associations]
symbol:ddx3 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0283661 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000056 GenomeReviews:CM000153_GR GO:GO:0006397
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K11594 HSSP:P09052 RefSeq:XP_638950.1 ProteinModelPortal:Q54QS3
SMR:Q54QS3 PRIDE:Q54QS3 EnsemblProtists:DDB0233447 GeneID:8624189
KEGG:ddi:DDB_G0283661 OMA:SEHICAP Uniprot:Q54QS3
Length = 712
Score = 651 (234.2 bits), Expect = 6.1e-66, Sum P(2) = 6.1e-66
Identities = 155/450 (34%), Positives = 246/450 (54%)
Query: 14 DKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNND-ISVSV-VTSDGQIDENPDFQIP 71
D+W+ + +N + E ++ + E KKN+D I + D I I
Sbjct: 185 DRWSNF-RDSRNHPEMKREFIDLEEHKAEEIFKKNDDNIGIDFNAYDDDDISIETSEHIC 243
Query: 72 NPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFL 131
P+ SF +L +++ +T P+P+Q A PI++ D++ AQTG+GKT AFL
Sbjct: 244 APLNSFADV-DLGDVLLGNIKHAKYTKPTPVQKSALPIILKNRDLMACAQTGSGKTAAFL 302
Query: 132 LPALIHTHLQTTP---------ISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAV 181
P + L P + A P LV+APTRELA QI E NK Y + +V
Sbjct: 303 FPIISGILLDGAPEAPPAYKPGVPRAACPRALVLAPTRELAQQIFDEANKFSYGSPVSSV 362
Query: 182 CVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFE 241
+YGG E+ Q+ ++ GC IL+AT GRL D + R + L + ++VLDEADRMLD+GFE
Sbjct: 363 VIYGGAEVFHQINELDRGCDILVATTGRLVDLLMRGRVSLSKIKYLVLDEADRMLDMGFE 422
Query: 242 PQINKT-SIYINP---NRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQ 297
PQI + S + P +RQT+M SAT+ K +Q +A ++ N + + VG + T +TQ
Sbjct: 423 PQIRQIISEFDMPGCRDRQTLMFSATFPKQIQNLAADFLYNYIFLKVGVV--GTTQNITQ 480
Query: 298 KIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLS 357
+I + E++K +L+++ + + ++F+ K S ++ L + + ++GDL+
Sbjct: 481 RIEYVVEEDKNSYLLDYLSGLKSD-GLCLIFVETKRSCDTLTYFLNQRNFPTTCIHGDLT 539
Query: 358 QEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAG 417
Q +RE AL+ S VATD+ASRGL + ++ VIN+D P+ I YVHR+GRTGRAG
Sbjct: 540 QPERENALQSFRSFATPFLVATDIASRGLHIGNVNLVINFDLPTDIHIYVHRIGRTGRAG 599
Query: 418 KSGESITLMTRKDWSHAHEIIPILEEGGHE 447
K G +I+ K+ E++ +++ +
Sbjct: 600 KKGLAISFFNEKNKPVGAELLKLMKASNQD 629
Score = 609 (219.4 bits), Expect = 8.9e-61, Sum P(2) = 8.9e-61
Identities = 147/417 (35%), Positives = 229/417 (54%)
Query: 534 DKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNND-ISVSV-VTSDGQIDENPDFQIP 591
D+W+ + +N + E ++ + E KKN+D I + D I I
Sbjct: 185 DRWSNF-RDSRNHPEMKREFIDLEEHKAEEIFKKNDDNIGIDFNAYDDDDISIETSEHIC 243
Query: 592 NPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFL 651
P+ SF +L +++ +T P+P+Q A PI++ D++ AQTG+GKT AFL
Sbjct: 244 APLNSFADV-DLGDVLLGNIKHAKYTKPTPVQKSALPIILKNRDLMACAQTGSGKTAAFL 302
Query: 652 LPALIHTHLQTTP---------ISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAV 701
P + L P + A P LV+APTRELA QI E NK Y + +V
Sbjct: 303 FPIISGILLDGAPEAPPAYKPGVPRAACPRALVLAPTRELAQQIFDEANKFSYGSPVSSV 362
Query: 702 CVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFE 761
+YGG E+ Q+ ++ GC IL+AT GRL D + R + L + ++VLDEADRMLD+GFE
Sbjct: 363 VIYGGAEVFHQINELDRGCDILVATTGRLVDLLMRGRVSLSKIKYLVLDEADRMLDMGFE 422
Query: 762 PQINKT-SIYINP---NRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQ 817
PQI + S + P +RQT+M SAT+ K +Q +A ++ N + + VG + T +TQ
Sbjct: 423 PQIRQIISEFDMPGCRDRQTLMFSATFPKQIQNLAADFLYNYIFLKVGVV--GTTQNITQ 480
Query: 818 KIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLS 877
+I + E++K +L+++ + + ++F+ K S ++ L + + ++GDL+
Sbjct: 481 RIEYVVEEDKNSYLLDYLSGLKSD-GLCLIFVETKRSCDTLTYFLNQRNFPTTCIHGDLT 539
Query: 878 QEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
Q +RE AL+ S VATD+ASRGL + ++ VIN+D P+ I YVHR+GRTG
Sbjct: 540 QPERENALQSFRSFATPFLVATDIASRGLHIGNVNLVINFDLPTDIHIYVHRIGRTG 596
Score = 38 (18.4 bits), Expect = 6.1e-66, Sum P(2) = 6.1e-66
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 905 GLDVPDLTHVINYDFPSHIEEYVHRV 930
G ++ L N D P E+ VH +
Sbjct: 616 GAELLKLMKASNQDIPDWFEKMVHNL 641
>ASPGD|ASPL0000077157 [details] [associations]
symbol:AN10557 species:162425 "Emericella nidulans"
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:0002183 "cytoplasmic translational initiation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0010628 "positive regulation of gene expression" evidence=IEA]
[GO:0097308 "cellular response to farnesol" evidence=IEP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:BN001303 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GNWANAN EMBL:AACD01000077 ProteinModelPortal:C8V8H4 SMR:C8V8H4
PRIDE:C8V8H4 EnsemblFungi:CADANIAT00005985 Uniprot:C8V8H4
Length = 668
Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
Identities = 150/394 (38%), Positives = 231/394 (58%)
Query: 70 IPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 129
+P PV +F ++ + + TP+P+Q + PI+M+G D++ AQTG+GKT
Sbjct: 181 VPEPVNTFTNPPLD-DHLISNIALARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGG 239
Query: 130 FLLPALIHTHLQ--TTPISERAG---------PSVLVMAPTRELATQIEREVNKIDYKGL 178
FL P L + P AG P+ L++APTREL +QI E K Y+
Sbjct: 240 FLFPILSQAYQNGPAAPPPSAAGQFGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSW 299
Query: 179 KAVCV-YGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLD 237
CV YGG +I QL +I GC +L+ATPGRL D + R I L + +++LDEADRMLD
Sbjct: 300 VRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLILDEADRMLD 359
Query: 238 LGFEPQINKTSIYIN-PN---RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATH 293
+GFEPQI + + PN RQT+M SAT+ +D+Q +A+ ++ + V ++VG + + +
Sbjct: 360 MGFEPQIRRIVEGEDMPNVNDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVG-STSE 418
Query: 294 TVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLY 353
+TQK+ +++ +K+ L++ + ++F+ K A+S L Q + +++
Sbjct: 419 NITQKVEYVEDHDKRSVLLDIL-HTHGTTGLTLIFVETKRMADALSEFLINQRFPATAIH 477
Query: 354 GDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRT 413
GD +Q +RE ALE SG I VAT VA+RGLD+P++THVINYD P+ I++YVHR+GRT
Sbjct: 478 GDRTQRERERALEMFRSGRYPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRT 537
Query: 414 GRAGKSGESITLMTRKDWSHAHEIIPILEEGGHE 447
GRAG +G + R + ++I +L+E E
Sbjct: 538 GRAGNTGIATAFFNRGNRGVVRDLIDLLKEAHQE 571
Score = 628 (226.1 bits), Expect = 3.3e-61, P = 3.3e-61
Identities = 140/361 (38%), Positives = 215/361 (59%)
Query: 590 IPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 649
+P PV +F ++ + + TP+P+Q + PI+M+G D++ AQTG+GKT
Sbjct: 181 VPEPVNTFTNPPLD-DHLISNIALARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGG 239
Query: 650 FLLPALIHTHLQ--TTPISERAG---------PSVLVMAPTRELATQIEREVNKIDYKGL 698
FL P L + P AG P+ L++APTREL +QI E K Y+
Sbjct: 240 FLFPILSQAYQNGPAAPPPSAAGQFGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSW 299
Query: 699 KAVCV-YGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLD 757
CV YGG ++ QL +I GC +L+ATPGRL D + R I L + +++LDEADRMLD
Sbjct: 300 VRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLILDEADRMLD 359
Query: 758 LGFEPQINKTSIYIN-PN---RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATH 813
+GFEPQI + + PN RQT+M SAT+ +D+Q +A+ ++ + V ++VG + + +
Sbjct: 360 MGFEPQIRRIVEGEDMPNVNDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVG-STSE 418
Query: 814 TVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLY 873
+TQK+ +++ +K+ L++ + ++F+ K A+S L Q + +++
Sbjct: 419 NITQKVEYVEDHDKRSVLLDIL-HTHGTTGLTLIFVETKRMADALSEFLINQRFPATAIH 477
Query: 874 GDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRT 933
GD +Q +RE ALE SG I VAT VA+RGLD+P++THVINYD P+ I++YVHR+GRT
Sbjct: 478 GDRTQRERERALEMFRSGRYPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRT 537
Query: 934 G 934
G
Sbjct: 538 G 538
>WB|WBGene00002244 [details] [associations]
symbol:laf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0042006
"masculinization of hermaphroditic germ-line" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HOGENOM:HOG000268804 KO:K11594 GO:GO:0042006 EMBL:FO081822
EMBL:FJ348231 RefSeq:NP_001254859.1 UniGene:Cel.25045
ProteinModelPortal:D0PV95 SMR:D0PV95 GeneID:190611
KEGG:cel:CELE_Y71H2AM.19 CTD:190611 WormBase:Y71H2AM.19b
ArrayExpress:D0PV95 Uniprot:D0PV95
Length = 708
Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
Identities = 154/397 (38%), Positives = 239/397 (60%)
Query: 70 IPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 129
+P P++ F H I ++ + P+P+Q + P L G D++ AQTG+GKT A
Sbjct: 226 VPQPISLFSDLSLH-EWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTGSGKTAA 284
Query: 130 FLLPALIHTHLQTTP------ISERAG-----PSVLVMAPTRELATQIEREVNKIDYKG- 177
FL+P L++ LQ P ++ G PS LV++PTREL+ QI E K Y+
Sbjct: 285 FLVP-LVNAILQDGPDAVHRSVTSSGGRKKQYPSALVLSPTRELSLQIFNESRKFAYRTP 343
Query: 178 LKAVCVYGGKE-IEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRML 236
+ + +YGG+E + Q+ K+R GCHILIATPGRL D + + I ++ ++VLDEADRML
Sbjct: 344 ITSALLYGGRENYKDQIHKLRLGCHILIATPGRLIDVMDQGLIGMEGCRYLVLDEADRML 403
Query: 237 DLGFEPQINKTSIYIN--PNRQ---TVMTSATWNKDVQRVAKKYMV-NPVKVNVGSLDLA 290
D+GFEPQI + + N P+++ T M SAT+ K++Q +A+ ++ N V + VG + +
Sbjct: 404 DMGFEPQIRQI-VECNRMPSKEERITAMFSATFPKEIQLLAQDFLKENYVFLAVGRVG-S 461
Query: 291 ATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSC 350
+ + QKI+ ++EDEK+ +LM+ D + +VF+ K S ++ L Q +
Sbjct: 462 TSENIMQKIVWVEEDEKRSYLMDLLDATGDS-SLTLVFVETKRGASDLAYYLNRQNYEVV 520
Query: 351 SLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRV 410
+++GDL Q +RE L+ +G A I VAT VA+RGLD+P++ HVINYD PS ++EYVHR+
Sbjct: 521 TIHGDLKQFEREKHLDLFRTGTAPILVATAVAARGLDIPNVKHVINYDLPSDVDEYVHRI 580
Query: 411 GRTGRAGKSGESITLMTRKDWSHAHEIIPILEEGGHE 447
GRTGR G G + + K+ + A E++ ++ E E
Sbjct: 581 GRTGRVGNVGLATSFFNDKNRNIARELMDLIVEANQE 617
Score = 632 (227.5 bits), Expect = 1.1e-61, P = 1.1e-61
Identities = 146/364 (40%), Positives = 223/364 (61%)
Query: 590 IPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 649
+P P++ F H I ++ + P+P+Q + P L G D++ AQTG+GKT A
Sbjct: 226 VPQPISLFSDLSLH-EWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTGSGKTAA 284
Query: 650 FLLPALIHTHLQTTP------ISERAG-----PSVLVMAPTRELATQIEREVNKIDYKG- 697
FL+P L++ LQ P ++ G PS LV++PTREL+ QI E K Y+
Sbjct: 285 FLVP-LVNAILQDGPDAVHRSVTSSGGRKKQYPSALVLSPTRELSLQIFNESRKFAYRTP 343
Query: 698 LKAVCVYGGKE-LEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRML 756
+ + +YGG+E + Q+ K+R GCHILIATPGRL D + + I ++ ++VLDEADRML
Sbjct: 344 ITSALLYGGRENYKDQIHKLRLGCHILIATPGRLIDVMDQGLIGMEGCRYLVLDEADRML 403
Query: 757 DLGFEPQINKTSIYIN--PNRQ---TVMTSATWNKDVQRVAKKYMV-NPVKVNVGSLDLA 810
D+GFEPQI + + N P+++ T M SAT+ K++Q +A+ ++ N V + VG + +
Sbjct: 404 DMGFEPQIRQI-VECNRMPSKEERITAMFSATFPKEIQLLAQDFLKENYVFLAVGRVG-S 461
Query: 811 ATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSC 870
+ + QKI+ ++EDEK+ +LM+ D + +VF+ K S ++ L Q +
Sbjct: 462 TSENIMQKIVWVEEDEKRSYLMDLLDATGDS-SLTLVFVETKRGASDLAYYLNRQNYEVV 520
Query: 871 SLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRV 930
+++GDL Q +RE L+ +G A I VAT VA+RGLD+P++ HVINYD PS ++EYVHR+
Sbjct: 521 TIHGDLKQFEREKHLDLFRTGTAPILVATAVAARGLDIPNVKHVINYDLPSDVDEYVHRI 580
Query: 931 GRTG 934
GRTG
Sbjct: 581 GRTG 584
>UNIPROTKB|B4DLW8 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 HOVERGEN:HBG015893 UniGene:Hs.279806
HGNC:HGNC:2746 ChiTaRS:DDX5 EMBL:AK297192 IPI:IPI00798375
STRING:B4DLW8 Ensembl:ENST00000450599 UCSC:uc010wqa.1
Uniprot:B4DLW8
Length = 535
Score = 612 (220.5 bits), Expect = 1.9e-65, Sum P(2) = 1.9e-65
Identities = 123/311 (39%), Positives = 195/311 (62%)
Query: 136 IHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEIEPQL 193
+ T+ ++ I+ R GP LV+APTRELA Q+++ + LK+ C+YGG PQ+
Sbjct: 73 VETYRRSKEITVRGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQI 132
Query: 194 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINP 253
+ G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFEPQI K I P
Sbjct: 133 RDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRP 192
Query: 254 NRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLME 313
+RQT+M SATW K+V+++A+ ++ + + +N+G+L+L+A H + Q + + + EK + L+
Sbjct: 193 DRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIR 252
Query: 314 FFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGY 372
+ M E+ +K +VF+ K ++ + + ++GD SQ++R+ L + G
Sbjct: 253 LMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGK 312
Query: 373 ARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWS 432
A I +ATDVASRGLDV D+ VINYD+P+ E+Y+HR+GRT R+ K+G + T T +
Sbjct: 313 APILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIK 372
Query: 433 HAHEIIPILEE 443
++I +L E
Sbjct: 373 QVSDLISVLRE 383
Score = 574 (207.1 bits), Expect = 5.3e-61, Sum P(2) = 5.3e-61
Identities = 115/281 (40%), Positives = 180/281 (64%)
Query: 656 IHTHLQTTPISERA-GPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKELEPQL 713
+ T+ ++ I+ R GP LV+APTRELA Q+++ + LK+ C+YGG PQ+
Sbjct: 73 VETYRRSKEITVRGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQI 132
Query: 714 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINP 773
+ G I IATPGRL DF+ +L+ +++VLDEADRMLD+GFEPQI K I P
Sbjct: 133 RDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRP 192
Query: 774 NRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLME 833
+RQT+M SATW K+V+++A+ ++ + + +N+G+L+L+A H + Q + + + EK + L+
Sbjct: 193 DRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIR 252
Query: 834 FFDN-MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGY 892
+ M E+ +K +VF+ K ++ + + ++GD SQ++R+ L + G
Sbjct: 253 LMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGK 312
Query: 893 ARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRT 933
A I +ATDVASRGLDV D+ VINYD+P+ E+Y+HR+GRT
Sbjct: 313 APILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRT 353
Score = 79 (32.9 bits), Expect = 1.9e-65, Sum P(2) = 1.9e-65
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 13 RDKWARE--PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQI 62
+ KW + PK KN Y+E P++A T ++VE +R+ + +I+V DG I
Sbjct: 43 KKKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRR-SKEITVR---GDGPI 90
Score = 79 (32.9 bits), Expect = 5.3e-61, Sum P(2) = 5.3e-61
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 533 RDKWARE--PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQI 582
+ KW + PK KN Y+E P++A T ++VE +R+ + +I+V DG I
Sbjct: 43 KKKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRR-SKEITVR---GDGPI 90
>MGI|MGI:1920185 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
MGI:MGI:1920185 GO:GO:0005783 GO:GO:0005524 GO:GO:0005634
GO:GO:0008380 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006397 GO:GO:0045944 GO:GO:0051607 GO:GO:0003723
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:AK156957 EMBL:BC011308 IPI:IPI00127071
RefSeq:NP_598820.2 UniGene:Mm.205045 ProteinModelPortal:Q91VN6
SMR:Q91VN6 IntAct:Q91VN6 STRING:Q91VN6 PhosphoSite:Q91VN6
PaxDb:Q91VN6 PRIDE:Q91VN6 Ensembl:ENSMUST00000021956 GeneID:72935
KEGG:mmu:72935 InParanoid:Q3U0E0 NextBio:337171 Bgee:Q91VN6
CleanEx:MM_DDX41 Genevestigator:Q91VN6
GermOnline:ENSMUSG00000021494 Uniprot:Q91VN6
Length = 622
Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
Identities = 167/434 (38%), Positives = 241/434 (55%)
Query: 6 ALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDEN 65
AL KE K IK + V +M+ E+ E RKK + + V DG
Sbjct: 125 ALMSVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHIL----VEGDG----- 175
Query: 66 PDFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGT 124
IP P+ SFK+ +P ILR L+ P+PIQ Q P ++SG DMIGIA TG+
Sbjct: 176 ----IPPPIKSFKE--MKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGS 229
Query: 125 GKTFAFLLPALIHTHLQTT--PISERAGPSVLVMAPTRELATQ----IE---REVNKIDY 175
GKT F LP ++ Q P S+R GP L++ P+RELA Q +E R + +
Sbjct: 230 GKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSS 289
Query: 176 KGLK-AVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADR 234
L+ A+C+ GG ++ Q+E IR G H+++ATPGRL D + + + L ++ LDEADR
Sbjct: 290 PLLRCALCI-GGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADR 348
Query: 235 MLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHT 294
M+D+GFE I Y RQT++ SAT K +Q AK +V PV +NVG AA+
Sbjct: 349 MIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAG-AASLD 407
Query: 295 VTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYG 354
V Q++ + E+ K +L+E + + V++F +KA V A+ L + ++ +++G
Sbjct: 408 VIQEVEYVKEEAKMVYLLEC---LQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHG 464
Query: 355 DLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 414
QE+R A+E G + VATDVAS+GLD P + HVINYD P IE YVHR+GRTG
Sbjct: 465 GKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTG 524
Query: 415 RAGKSGESITLMTR 428
R+G +G + T + +
Sbjct: 525 RSGNTGIATTFINK 538
Score = 639 (230.0 bits), Expect = 1.6e-62, P = 1.6e-62
Identities = 164/426 (38%), Positives = 235/426 (55%)
Query: 520 TMEELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSD 579
++ E AL KE K IK + V +M+ E+ E RKK + + V D
Sbjct: 119 SVAEGRALMSVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHIL----VEGD 174
Query: 580 GQIDENPDFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIG 638
G IP P+ SFK+ +P ILR L+ P+PIQ Q P ++SG DMIG
Sbjct: 175 G---------IPPPIKSFKE--MKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIG 223
Query: 639 IAQTGTGKTFAFLLPALIHTHLQTT--PISERAGPSVLVMAPTRELATQ----IE---RE 689
IA TG+GKT F LP ++ Q P S+R GP L++ P+RELA Q +E R
Sbjct: 224 IAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRL 283
Query: 690 VNKIDYKGLK-AVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVV 748
+ + L+ A+C+ GG ++ Q+E IR G H+++ATPGRL D + + + L ++
Sbjct: 284 LQEDSSPLLRCALCI-GGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 342
Query: 749 LDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLD 808
LDEADRM+D+GFE I Y RQT++ SAT K +Q AK +V PV +NVG
Sbjct: 343 LDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAG 402
Query: 809 LAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRK 868
AA+ V Q++ + E+ K +L+E + + V++F +KA V A+ L + +
Sbjct: 403 -AASLDVIQEVEYVKEEAKMVYLLEC---LQKTPPPVLIFAEKKADVDAIHEYLLLKGVE 458
Query: 869 SCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVH 928
+ +++G QE+R A+E G + VATDVAS+GLD P + HVINYD P IE YVH
Sbjct: 459 AVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVH 518
Query: 929 RVGRTG 934
R+GRTG
Sbjct: 519 RIGRTG 524
>TAIR|locus:2176192 [details] [associations]
symbol:AT5G51280 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000741 "karyogamy"
evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AB023044 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K13116
OMA:DICRYLC HOGENOM:HOG000268792 EMBL:AK226380 IPI:IPI00530020
RefSeq:NP_199941.1 UniGene:At.29686 ProteinModelPortal:Q9LU46
SMR:Q9LU46 PaxDb:Q9LU46 PRIDE:Q9LU46 DNASU:835202
EnsemblPlants:AT5G51280.1 GeneID:835202 KEGG:ath:AT5G51280
GeneFarm:1011 TAIR:At5g51280 InParanoid:Q9LU46 PhylomeDB:Q9LU46
ProtClustDB:CLSN2685494 Genevestigator:Q9LU46 GermOnline:AT5G51280
Uniprot:Q9LU46
Length = 591
Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
Identities = 162/440 (36%), Positives = 245/440 (55%)
Query: 2 EELMA-LSDRKERDKWAREPKIIKNVYKEDPEVANMTPE-QVEAFRKKNNDISVSVVTSD 59
+E+M LSD+K RE + K + +P + P + K D+ +
Sbjct: 79 KEMMEHLSDKKTLMS-VRE--LAKGITYTEPLLTGWKPPLHIRKMSSKQRDL----IRKQ 131
Query: 60 GQIDENPDFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIG 118
I N D IP P+ +FK +P +L L+ P+PIQ Q P++++G DMIG
Sbjct: 132 WHIIVNGD-DIPPPIKNFKD--MKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIG 188
Query: 119 IAQTGTGKTFAFLLPALIHTHLQTT---PISERAGPSVLVMAPTRELATQ----IEREVN 171
IA TG+GKT F+LP +I LQ PI+ GP L++ P+RELA Q +E+ V
Sbjct: 189 IAFTGSGKTLVFVLP-MIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVA 247
Query: 172 KI---DYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVV 228
+ Y L+++ GG ++ QLE ++ G HI++ATPGRL D +++ + L A ++
Sbjct: 248 PLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLT 307
Query: 229 LDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLD 288
LDEADR++DLGFE I + + RQT++ SAT +Q A+ +V PV VNVG
Sbjct: 308 LDEADRLVDLGFEDDIREVFDHFKSQRQTLLFSATMPTKIQIFARSALVKPVTVNVGRAG 367
Query: 289 LAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRK 348
AA V Q++ + ++ K +L+E + + V++F KA V + L + +
Sbjct: 368 -AANLDVIQEVEYVKQEAKIVYLLEC---LQKTSPPVLIFCENKADVDDIHEYLLLKGVE 423
Query: 349 SCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVH 408
+ +++G QEDRE A+ +G + VATDVAS+GLD PD+ HVINYD P+ IE YVH
Sbjct: 424 AVAIHGGKDQEDREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVH 483
Query: 409 RVGRTGRAGKSGESITLMTR 428
R+GRTGR GK+G + T + +
Sbjct: 484 RIGRTGRCGKTGIATTFINK 503
Score = 637 (229.3 bits), Expect = 2.9e-62, P = 2.9e-62
Identities = 157/426 (36%), Positives = 236/426 (55%)
Query: 522 EELMA-LSDRKERDKWAREPKIIKNVYKEDPEVANMTPE-QVEAFRKKNNDISVSVVTSD 579
+E+M LSD+K RE + K + +P + P + K D+ +
Sbjct: 79 KEMMEHLSDKKTLMS-VRE--LAKGITYTEPLLTGWKPPLHIRKMSSKQRDL----IRKQ 131
Query: 580 GQIDENPDFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIG 638
I N D IP P+ +FK +P +L L+ P+PIQ Q P++++G DMIG
Sbjct: 132 WHIIVNGD-DIPPPIKNFKD--MKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIG 188
Query: 639 IAQTGTGKTFAFLLPALIHTHLQTT---PISERAGPSVLVMAPTRELATQ----IEREVN 691
IA TG+GKT F+LP +I LQ PI+ GP L++ P+RELA Q +E+ V
Sbjct: 189 IAFTGSGKTLVFVLP-MIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVA 247
Query: 692 KI---DYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVV 748
+ Y L+++ GG ++ QLE ++ G HI++ATPGRL D +++ + L A ++
Sbjct: 248 PLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLT 307
Query: 749 LDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLD 808
LDEADR++DLGFE I + + RQT++ SAT +Q A+ +V PV VNVG
Sbjct: 308 LDEADRLVDLGFEDDIREVFDHFKSQRQTLLFSATMPTKIQIFARSALVKPVTVNVGRAG 367
Query: 809 LAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRK 868
AA V Q++ + ++ K +L+E + + V++F KA V + L + +
Sbjct: 368 -AANLDVIQEVEYVKQEAKIVYLLEC---LQKTSPPVLIFCENKADVDDIHEYLLLKGVE 423
Query: 869 SCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVH 928
+ +++G QEDRE A+ +G + VATDVAS+GLD PD+ HVINYD P+ IE YVH
Sbjct: 424 AVAIHGGKDQEDREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVH 483
Query: 929 RVGRTG 934
R+GRTG
Sbjct: 484 RIGRTG 489
>UNIPROTKB|A3KN07 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:DAAA02020056 EMBL:BC133465 IPI:IPI00840518
RefSeq:NP_001076071.1 UniGene:Bt.5258 SMR:A3KN07
Ensembl:ENSBTAT00000043510 GeneID:505276 KEGG:bta:505276
InParanoid:A3KN07 NextBio:20867058 Uniprot:A3KN07
Length = 622
Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
Identities = 167/434 (38%), Positives = 241/434 (55%)
Query: 6 ALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDEN 65
AL KE K IK + V +M+ E+ E RKK + + V DG
Sbjct: 125 ALMSVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHIL----VEGDG----- 175
Query: 66 PDFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGT 124
IP P+ SFK+ +P ILR L+ P+PIQ Q P ++SG DMIGIA TG+
Sbjct: 176 ----IPPPIKSFKE--MKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGS 229
Query: 125 GKTFAFLLPALIHTHLQTT--PISERAGPSVLVMAPTRELATQ----IE---REVNKIDY 175
GKT F LP ++ Q P S+R GP L++ P+RELA Q +E R + +
Sbjct: 230 GKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSS 289
Query: 176 KGLK-AVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADR 234
L+ A+C+ GG ++ Q+E IR G H+++ATPGRL D + + + L ++ LDEADR
Sbjct: 290 PLLRCALCI-GGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADR 348
Query: 235 MLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHT 294
M+D+GFE I Y RQT++ SAT K +Q AK +V PV +NVG AA+
Sbjct: 349 MIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAG-AASLD 407
Query: 295 VTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYG 354
V Q++ + E+ K +L+E + + V++F +KA V A+ L + ++ +++G
Sbjct: 408 VIQEVEYVKEEAKMVYLLEC---LQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHG 464
Query: 355 DLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 414
QE+R A+E G + VATDVAS+GLD P + HVINYD P IE YVHR+GRTG
Sbjct: 465 GKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTG 524
Query: 415 RAGKSGESITLMTR 428
R+G +G + T + +
Sbjct: 525 RSGNTGIATTFINK 538
Score = 638 (229.6 bits), Expect = 2.2e-62, P = 2.2e-62
Identities = 164/426 (38%), Positives = 235/426 (55%)
Query: 520 TMEELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSD 579
++ E AL KE K IK + V +M+ E+ E RKK + + V D
Sbjct: 119 SVAEGRALMSVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHIL----VEGD 174
Query: 580 GQIDENPDFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIG 638
G IP P+ SFK+ +P ILR L+ P+PIQ Q P ++SG DMIG
Sbjct: 175 G---------IPPPIKSFKE--MKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIG 223
Query: 639 IAQTGTGKTFAFLLPALIHTHLQTT--PISERAGPSVLVMAPTRELATQ----IE---RE 689
IA TG+GKT F LP ++ Q P S+R GP L++ P+RELA Q +E R
Sbjct: 224 IAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRL 283
Query: 690 VNKIDYKGLK-AVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVV 748
+ + L+ A+C+ GG ++ Q+E IR G H+++ATPGRL D + + + L ++
Sbjct: 284 LQEDSSPLLRCALCI-GGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 342
Query: 749 LDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLD 808
LDEADRM+D+GFE I Y RQT++ SAT K +Q AK +V PV +NVG
Sbjct: 343 LDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAG 402
Query: 809 LAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRK 868
AA+ V Q++ + E+ K +L+E + + V++F +KA V A+ L + +
Sbjct: 403 -AASLDVIQEVEYVKEEAKMVYLLEC---LQKTPPPVLIFAEKKADVDAIHEYLLLKGVE 458
Query: 869 SCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVH 928
+ +++G QE+R A+E G + VATDVAS+GLD P + HVINYD P IE YVH
Sbjct: 459 AVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVH 518
Query: 929 RVGRTG 934
R+GRTG
Sbjct: 519 RIGRTG 524
>UNIPROTKB|E2R052 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0035458 "cellular
response to interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 CTD:51428 EMBL:AAEX03002959
RefSeq:XP_536417.2 ProteinModelPortal:E2R052
Ensembl:ENSCAFT00000025858 GeneID:479274 KEGG:cfa:479274
NextBio:20854482 Uniprot:E2R052
Length = 622
Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
Identities = 167/434 (38%), Positives = 241/434 (55%)
Query: 6 ALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDEN 65
AL KE K IK + V +M+ E+ E RKK + + V DG
Sbjct: 125 ALMSVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHIL----VEGDG----- 175
Query: 66 PDFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGT 124
IP P+ SFK+ +P ILR L+ P+PIQ Q P ++SG DMIGIA TG+
Sbjct: 176 ----IPPPIKSFKE--MKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGS 229
Query: 125 GKTFAFLLPALIHTHLQTT--PISERAGPSVLVMAPTRELATQ----IE---REVNKIDY 175
GKT F LP ++ Q P S+R GP L++ P+RELA Q +E R + +
Sbjct: 230 GKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSS 289
Query: 176 KGLK-AVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADR 234
L+ A+C+ GG ++ Q+E IR G H+++ATPGRL D + + + L ++ LDEADR
Sbjct: 290 PLLRCALCI-GGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADR 348
Query: 235 MLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHT 294
M+D+GFE I Y RQT++ SAT K +Q AK +V PV +NVG AA+
Sbjct: 349 MIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAG-AASLD 407
Query: 295 VTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYG 354
V Q++ + E+ K +L+E + + V++F +KA V A+ L + ++ +++G
Sbjct: 408 VIQEVEYVKEEAKMVYLLEC---LQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHG 464
Query: 355 DLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 414
QE+R A+E G + VATDVAS+GLD P + HVINYD P IE YVHR+GRTG
Sbjct: 465 GKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTG 524
Query: 415 RAGKSGESITLMTR 428
R+G +G + T + +
Sbjct: 525 RSGNTGIATTFINK 538
Score = 638 (229.6 bits), Expect = 2.2e-62, P = 2.2e-62
Identities = 164/426 (38%), Positives = 235/426 (55%)
Query: 520 TMEELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSD 579
++ E AL KE K IK + V +M+ E+ E RKK + + V D
Sbjct: 119 SVAEGRALMSVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHIL----VEGD 174
Query: 580 GQIDENPDFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIG 638
G IP P+ SFK+ +P ILR L+ P+PIQ Q P ++SG DMIG
Sbjct: 175 G---------IPPPIKSFKE--MKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIG 223
Query: 639 IAQTGTGKTFAFLLPALIHTHLQTT--PISERAGPSVLVMAPTRELATQ----IE---RE 689
IA TG+GKT F LP ++ Q P S+R GP L++ P+RELA Q +E R
Sbjct: 224 IAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRL 283
Query: 690 VNKIDYKGLK-AVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVV 748
+ + L+ A+C+ GG ++ Q+E IR G H+++ATPGRL D + + + L ++
Sbjct: 284 LQEDSSPLLRCALCI-GGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 342
Query: 749 LDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLD 808
LDEADRM+D+GFE I Y RQT++ SAT K +Q AK +V PV +NVG
Sbjct: 343 LDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAG 402
Query: 809 LAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRK 868
AA+ V Q++ + E+ K +L+E + + V++F +KA V A+ L + +
Sbjct: 403 -AASLDVIQEVEYVKEEAKMVYLLEC---LQKTPPPVLIFAEKKADVDAIHEYLLLKGVE 458
Query: 869 SCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVH 928
+ +++G QE+R A+E G + VATDVAS+GLD P + HVINYD P IE YVH
Sbjct: 459 AVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVH 518
Query: 929 RVGRTG 934
R+GRTG
Sbjct: 519 RIGRTG 524
>UNIPROTKB|J9NZF6 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AAEX03002959
Ensembl:ENSCAFT00000042923 Uniprot:J9NZF6
Length = 649
Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
Identities = 167/434 (38%), Positives = 241/434 (55%)
Query: 6 ALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDEN 65
AL KE K IK + V +M+ E+ E RKK + + V DG
Sbjct: 152 ALMSVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHIL----VEGDG----- 202
Query: 66 PDFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGT 124
IP P+ SFK+ +P ILR L+ P+PIQ Q P ++SG DMIGIA TG+
Sbjct: 203 ----IPPPIKSFKE--MKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGS 256
Query: 125 GKTFAFLLPALIHTHLQTT--PISERAGPSVLVMAPTRELATQ----IE---REVNKIDY 175
GKT F LP ++ Q P S+R GP L++ P+RELA Q +E R + +
Sbjct: 257 GKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSS 316
Query: 176 KGLK-AVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADR 234
L+ A+C+ GG ++ Q+E IR G H+++ATPGRL D + + + L ++ LDEADR
Sbjct: 317 PLLRCALCI-GGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADR 375
Query: 235 MLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHT 294
M+D+GFE I Y RQT++ SAT K +Q AK +V PV +NVG AA+
Sbjct: 376 MIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAG-AASLD 434
Query: 295 VTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYG 354
V Q++ + E+ K +L+E + + V++F +KA V A+ L + ++ +++G
Sbjct: 435 VIQEVEYVKEEAKMVYLLEC---LQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHG 491
Query: 355 DLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 414
QE+R A+E G + VATDVAS+GLD P + HVINYD P IE YVHR+GRTG
Sbjct: 492 GKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTG 551
Query: 415 RAGKSGESITLMTR 428
R+G +G + T + +
Sbjct: 552 RSGNTGIATTFINK 565
Score = 638 (229.6 bits), Expect = 2.2e-62, P = 2.2e-62
Identities = 164/426 (38%), Positives = 235/426 (55%)
Query: 520 TMEELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSD 579
++ E AL KE K IK + V +M+ E+ E RKK + + V D
Sbjct: 146 SVAEGRALMSVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHIL----VEGD 201
Query: 580 GQIDENPDFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIG 638
G IP P+ SFK+ +P ILR L+ P+PIQ Q P ++SG DMIG
Sbjct: 202 G---------IPPPIKSFKE--MKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIG 250
Query: 639 IAQTGTGKTFAFLLPALIHTHLQTT--PISERAGPSVLVMAPTRELATQ----IE---RE 689
IA TG+GKT F LP ++ Q P S+R GP L++ P+RELA Q +E R
Sbjct: 251 IAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRL 310
Query: 690 VNKIDYKGLK-AVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVV 748
+ + L+ A+C+ GG ++ Q+E IR G H+++ATPGRL D + + + L ++
Sbjct: 311 LQEDSSPLLRCALCI-GGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 369
Query: 749 LDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLD 808
LDEADRM+D+GFE I Y RQT++ SAT K +Q AK +V PV +NVG
Sbjct: 370 LDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAG 429
Query: 809 LAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRK 868
AA+ V Q++ + E+ K +L+E + + V++F +KA V A+ L + +
Sbjct: 430 -AASLDVIQEVEYVKEEAKMVYLLEC---LQKTPPPVLIFAEKKADVDAIHEYLLLKGVE 485
Query: 869 SCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVH 928
+ +++G QE+R A+E G + VATDVAS+GLD P + HVINYD P IE YVH
Sbjct: 486 AVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVH 545
Query: 929 RVGRTG 934
R+GRTG
Sbjct: 546 RIGRTG 551
>UNIPROTKB|J3KNN5 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:KDQEERS HGNC:HGNC:18674 ChiTaRS:DDX41 EMBL:AC145098
Ensembl:ENST00000330503 Uniprot:J3KNN5
Length = 640
Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
Identities = 167/434 (38%), Positives = 241/434 (55%)
Query: 6 ALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDEN 65
AL KE K IK + V +M+ E+ E RKK + + V DG
Sbjct: 143 ALMSVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHIL----VEGDG----- 193
Query: 66 PDFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGT 124
IP P+ SFK+ +P ILR L+ P+PIQ Q P ++SG DMIGIA TG+
Sbjct: 194 ----IPPPIKSFKE--MKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGS 247
Query: 125 GKTFAFLLPALIHTHLQTT--PISERAGPSVLVMAPTRELATQ----IE---REVNKIDY 175
GKT F LP ++ Q P S+R GP L++ P+RELA Q +E R + +
Sbjct: 248 GKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSS 307
Query: 176 KGLK-AVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADR 234
L+ A+C+ GG ++ Q+E IR G H+++ATPGRL D + + + L ++ LDEADR
Sbjct: 308 PLLRCALCI-GGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADR 366
Query: 235 MLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHT 294
M+D+GFE I Y RQT++ SAT K +Q AK +V PV +NVG AA+
Sbjct: 367 MIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAG-AASLD 425
Query: 295 VTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYG 354
V Q++ + E+ K +L+E + + V++F +KA V A+ L + ++ +++G
Sbjct: 426 VIQEVEYVKEEAKMVYLLEC---LQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHG 482
Query: 355 DLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 414
QE+R A+E G + VATDVAS+GLD P + HVINYD P IE YVHR+GRTG
Sbjct: 483 GKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTG 542
Query: 415 RAGKSGESITLMTR 428
R+G +G + T + +
Sbjct: 543 RSGNTGIATTFINK 556
Score = 638 (229.6 bits), Expect = 2.2e-62, P = 2.2e-62
Identities = 164/426 (38%), Positives = 235/426 (55%)
Query: 520 TMEELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSD 579
++ E AL KE K IK + V +M+ E+ E RKK + + V D
Sbjct: 137 SVAEGRALMSVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHIL----VEGD 192
Query: 580 GQIDENPDFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIG 638
G IP P+ SFK+ +P ILR L+ P+PIQ Q P ++SG DMIG
Sbjct: 193 G---------IPPPIKSFKE--MKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIG 241
Query: 639 IAQTGTGKTFAFLLPALIHTHLQTT--PISERAGPSVLVMAPTRELATQ----IE---RE 689
IA TG+GKT F LP ++ Q P S+R GP L++ P+RELA Q +E R
Sbjct: 242 IAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRL 301
Query: 690 VNKIDYKGLK-AVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVV 748
+ + L+ A+C+ GG ++ Q+E IR G H+++ATPGRL D + + + L ++
Sbjct: 302 LQEDSSPLLRCALCI-GGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 360
Query: 749 LDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLD 808
LDEADRM+D+GFE I Y RQT++ SAT K +Q AK +V PV +NVG
Sbjct: 361 LDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAG 420
Query: 809 LAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRK 868
AA+ V Q++ + E+ K +L+E + + V++F +KA V A+ L + +
Sbjct: 421 -AASLDVIQEVEYVKEEAKMVYLLEC---LQKTPPPVLIFAEKKADVDAIHEYLLLKGVE 476
Query: 869 SCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVH 928
+ +++G QE+R A+E G + VATDVAS+GLD P + HVINYD P IE YVH
Sbjct: 477 AVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVH 536
Query: 929 RVGRTG 934
R+GRTG
Sbjct: 537 RIGRTG 542
>UNIPROTKB|Q9UJV9 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0035458
"cellular response to interferon-beta" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005783
GO:GO:0007275 GO:GO:0005524 GO:GO:0006915 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0003723 GO:GO:0035458 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CH471195
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 KO:K13116 EMBL:AF195417 EMBL:AK001255
EMBL:AK027768 EMBL:AK315491 EMBL:BC015476 EMBL:AL137455
EMBL:BX641072 IPI:IPI00007208 PIR:T46269 RefSeq:NP_057306.2
UniGene:Hs.484288 PDB:2P6N PDBsum:2P6N ProteinModelPortal:Q9UJV9
SMR:Q9UJV9 IntAct:Q9UJV9 MINT:MINT-3081244 STRING:Q9UJV9
PhosphoSite:Q9UJV9 DMDM:20532370 PaxDb:Q9UJV9 PeptideAtlas:Q9UJV9
PRIDE:Q9UJV9 DNASU:51428 Ensembl:ENST00000507955 GeneID:51428
KEGG:hsa:51428 UCSC:uc003mhn.3 CTD:51428 GeneCards:GC05M176938
HGNC:HGNC:18674 HPA:HPA017911 MIM:608170 neXtProt:NX_Q9UJV9
PharmGKB:PA134908862 HOGENOM:HOG000268792 InParanoid:Q9UJV9
OrthoDB:EOG4CVG6K PhylomeDB:Q9UJV9 ChiTaRS:DDX41
EvolutionaryTrace:Q9UJV9 GenomeRNAi:51428 NextBio:54987
ArrayExpress:Q9UJV9 Bgee:Q9UJV9 CleanEx:HS_DDX41
Genevestigator:Q9UJV9 GermOnline:ENSG00000183258 Uniprot:Q9UJV9
Length = 622
Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
Identities = 167/434 (38%), Positives = 241/434 (55%)
Query: 6 ALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDEN 65
AL KE K IK + V +M+ E+ E RKK + + V DG
Sbjct: 125 ALMSVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHIL----VEGDG----- 175
Query: 66 PDFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGT 124
IP P+ SFK+ +P ILR L+ P+PIQ Q P ++SG DMIGIA TG+
Sbjct: 176 ----IPPPIKSFKE--MKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGS 229
Query: 125 GKTFAFLLPALIHTHLQTT--PISERAGPSVLVMAPTRELATQ----IE---REVNKIDY 175
GKT F LP ++ Q P S+R GP L++ P+RELA Q +E R + +
Sbjct: 230 GKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSS 289
Query: 176 KGLK-AVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADR 234
L+ A+C+ GG ++ Q+E IR G H+++ATPGRL D + + + L ++ LDEADR
Sbjct: 290 PLLRCALCI-GGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADR 348
Query: 235 MLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHT 294
M+D+GFE I Y RQT++ SAT K +Q AK +V PV +NVG AA+
Sbjct: 349 MIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAG-AASLD 407
Query: 295 VTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYG 354
V Q++ + E+ K +L+E + + V++F +KA V A+ L + ++ +++G
Sbjct: 408 VIQEVEYVKEEAKMVYLLEC---LQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHG 464
Query: 355 DLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 414
QE+R A+E G + VATDVAS+GLD P + HVINYD P IE YVHR+GRTG
Sbjct: 465 GKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTG 524
Query: 415 RAGKSGESITLMTR 428
R+G +G + T + +
Sbjct: 525 RSGNTGIATTFINK 538
Score = 638 (229.6 bits), Expect = 2.2e-62, P = 2.2e-62
Identities = 164/426 (38%), Positives = 235/426 (55%)
Query: 520 TMEELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSD 579
++ E AL KE K IK + V +M+ E+ E RKK + + V D
Sbjct: 119 SVAEGRALMSVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHIL----VEGD 174
Query: 580 GQIDENPDFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIG 638
G IP P+ SFK+ +P ILR L+ P+PIQ Q P ++SG DMIG
Sbjct: 175 G---------IPPPIKSFKE--MKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIG 223
Query: 639 IAQTGTGKTFAFLLPALIHTHLQTT--PISERAGPSVLVMAPTRELATQ----IE---RE 689
IA TG+GKT F LP ++ Q P S+R GP L++ P+RELA Q +E R
Sbjct: 224 IAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRL 283
Query: 690 VNKIDYKGLK-AVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVV 748
+ + L+ A+C+ GG ++ Q+E IR G H+++ATPGRL D + + + L ++
Sbjct: 284 LQEDSSPLLRCALCI-GGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 342
Query: 749 LDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLD 808
LDEADRM+D+GFE I Y RQT++ SAT K +Q AK +V PV +NVG
Sbjct: 343 LDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAG 402
Query: 809 LAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRK 868
AA+ V Q++ + E+ K +L+E + + V++F +KA V A+ L + +
Sbjct: 403 -AASLDVIQEVEYVKEEAKMVYLLEC---LQKTPPPVLIFAEKKADVDAIHEYLLLKGVE 458
Query: 869 SCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVH 928
+ +++G QE+R A+E G + VATDVAS+GLD P + HVINYD P IE YVH
Sbjct: 459 AVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVH 518
Query: 929 RVGRTG 934
R+GRTG
Sbjct: 519 RIGRTG 524
>RGD|1311758 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0035458 "cellular response to interferon-beta"
evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0051607
"defense response to virus" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 RGD:1311758 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH474032 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOVERGEN:HBG015893 KO:K13116 CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:BC166825 IPI:IPI00565869
RefSeq:NP_001101516.1 UniGene:Rn.114971 SMR:B2RYL8
Ensembl:ENSRNOT00000018114 GeneID:314336 KEGG:rno:314336
UCSC:RGD:1311758 NextBio:667511 Genevestigator:B2RYL8
Uniprot:B2RYL8
Length = 622
Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
Identities = 167/434 (38%), Positives = 240/434 (55%)
Query: 6 ALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDEN 65
AL KE K IK + V +M+ E+ E RKK + + V DG
Sbjct: 125 ALMSVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHIL----VEGDG----- 175
Query: 66 PDFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGT 124
IP P+ SFK+ P ILR L+ P+PIQ Q P ++SG DMIGIA TG+
Sbjct: 176 ----IPPPIKSFKE--MKLPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGS 229
Query: 125 GKTFAFLLPALIHTHLQTT--PISERAGPSVLVMAPTRELATQ----IE---REVNKIDY 175
GKT F LP ++ Q P S+R GP L++ P+RELA Q +E R + +
Sbjct: 230 GKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSS 289
Query: 176 KGLK-AVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADR 234
L+ A+C+ GG ++ Q+E IR G H+++ATPGRL D + + + L ++ LDEADR
Sbjct: 290 PLLRCALCI-GGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADR 348
Query: 235 MLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHT 294
M+D+GFE I Y RQT++ SAT K +Q AK +V PV +NVG AA+
Sbjct: 349 MIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAG-AASLD 407
Query: 295 VTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYG 354
V Q++ + E+ K +L+E + + V++F +KA V A+ L + ++ +++G
Sbjct: 408 VIQEVEYVKEEAKMVYLLEC---LQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHG 464
Query: 355 DLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 414
QE+R A+E G + VATDVAS+GLD P + HVINYD P IE YVHR+GRTG
Sbjct: 465 GKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTG 524
Query: 415 RAGKSGESITLMTR 428
R+G +G + T + +
Sbjct: 525 RSGNTGIATTFINK 538
Score = 635 (228.6 bits), Expect = 5.0e-62, P = 5.0e-62
Identities = 164/426 (38%), Positives = 234/426 (54%)
Query: 520 TMEELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSD 579
++ E AL KE K IK + V +M+ E+ E RKK + + V D
Sbjct: 119 SVAEGRALMSVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHIL----VEGD 174
Query: 580 GQIDENPDFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIG 638
G IP P+ SFK+ P ILR L+ P+PIQ Q P ++SG DMIG
Sbjct: 175 G---------IPPPIKSFKE--MKLPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIG 223
Query: 639 IAQTGTGKTFAFLLPALIHTHLQTT--PISERAGPSVLVMAPTRELATQ----IE---RE 689
IA TG+GKT F LP ++ Q P S+R GP L++ P+RELA Q +E R
Sbjct: 224 IAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRL 283
Query: 690 VNKIDYKGLK-AVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVV 748
+ + L+ A+C+ GG ++ Q+E IR G H+++ATPGRL D + + + L ++
Sbjct: 284 LQEDSSPLLRCALCI-GGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 342
Query: 749 LDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLD 808
LDEADRM+D+GFE I Y RQT++ SAT K +Q AK +V PV +NVG
Sbjct: 343 LDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAG 402
Query: 809 LAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRK 868
AA+ V Q++ + E+ K +L+E + + V++F +KA V A+ L + +
Sbjct: 403 -AASLDVIQEVEYVKEEAKMVYLLEC---LQKTPPPVLIFAEKKADVDAIHEYLLLKGVE 458
Query: 869 SCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVH 928
+ +++G QE+R A+E G + VATDVAS+GLD P + HVINYD P IE YVH
Sbjct: 459 AVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVH 518
Query: 929 RVGRTG 934
R+GRTG
Sbjct: 519 RIGRTG 524
>RGD|1559513 [details] [associations]
symbol:RGD1559513 "similar to DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 RGD:1559513 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4CVG6K OMA:MEETETI
IPI:IPI00958592 Ensembl:ENSRNOT00000033492 UCSC:RGD:1559513
NextBio:667517 Uniprot:D4ADJ9
Length = 621
Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
Identities = 167/434 (38%), Positives = 238/434 (54%)
Query: 6 ALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDEN 65
AL KE K IK + V +M+ E+ E RKK + + V DG
Sbjct: 124 ALMSVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHIL----VEGDG----- 174
Query: 66 PDFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGT 124
IP P+ SFK+ P ILR L+ P+PIQ Q P ++SG DMIGIA TG+
Sbjct: 175 ----IPPPIKSFKE--MKLPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGS 228
Query: 125 GKTFAFLLPALIHTHLQTT--PISERAGPSVLVMAPTRELATQ----IEREVNKI--DYK 176
GKT F LP ++ Q P S+R GP L++ P+RELA Q +E + D
Sbjct: 229 GKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSS 288
Query: 177 GLK--AVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADR 234
L A+C+ GG ++ Q+E +R G HI++ATPGRL D + + + L ++ LDEADR
Sbjct: 289 PLLHCALCI-GGVSLKEQMETMRHGVHIMVATPGRLMDLLQKKMVSLDICRYLALDEADR 347
Query: 235 MLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHT 294
M+D+GFE I Y RQT++ SAT K +Q AK +V PV +NVG AA+
Sbjct: 348 MIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAG-AASLD 406
Query: 295 VTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYG 354
V Q++ + E+ K +L+E + + V++F +KA V A+ L + ++ +++G
Sbjct: 407 VIQEVEYVKEEAKMVYLLEC---LQKTPPPVLIFAKKKADVDAIHEYLLLKGVEAVAIHG 463
Query: 355 DLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 414
QE+R A+E G + VATDVAS+GLD P + HVINYD P IE YVHR+GRTG
Sbjct: 464 GKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTG 523
Query: 415 RAGKSGESITLMTR 428
R+G +G + T + +
Sbjct: 524 RSGNTGIATTFINK 537
Score = 636 (228.9 bits), Expect = 3.7e-62, P = 3.7e-62
Identities = 165/426 (38%), Positives = 232/426 (54%)
Query: 520 TMEELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSD 579
++ E AL KE K IK + V +M+ E+ E RKK + + V D
Sbjct: 118 SVAEGRALMSVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHIL----VEGD 173
Query: 580 GQIDENPDFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIG 638
G IP P+ SFK+ P ILR L+ P+PIQ Q P ++SG DMIG
Sbjct: 174 G---------IPPPIKSFKE--MKLPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIG 222
Query: 639 IAQTGTGKTFAFLLPALIHTHLQTT--PISERAGPSVLVMAPTRELATQ----IEREVNK 692
IA TG+GKT F LP ++ Q P S+R GP L++ P+RELA Q +E
Sbjct: 223 IAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRL 282
Query: 693 I--DYKGLK--AVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVV 748
+ D L A+C+ GG L+ Q+E +R G HI++ATPGRL D + + + L ++
Sbjct: 283 LQEDSSPLLHCALCI-GGVSLKEQMETMRHGVHIMVATPGRLMDLLQKKMVSLDICRYLA 341
Query: 749 LDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLD 808
LDEADRM+D+GFE I Y RQT++ SAT K +Q AK +V PV +NVG
Sbjct: 342 LDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAG 401
Query: 809 LAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRK 868
AA+ V Q++ + E+ K +L+E + + V++F +KA V A+ L + +
Sbjct: 402 -AASLDVIQEVEYVKEEAKMVYLLEC---LQKTPPPVLIFAKKKADVDAIHEYLLLKGVE 457
Query: 869 SCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVH 928
+ +++G QE+R A+E G + VATDVAS+GLD P + HVINYD P IE YVH
Sbjct: 458 AVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVH 517
Query: 929 RVGRTG 934
R+GRTG
Sbjct: 518 RIGRTG 523
>UNIPROTKB|F1NAH6 [details] [associations]
symbol:LOC100859810 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0035458 "cellular response to interferon-beta" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051607 "defense response
to virus" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0035458
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AADN02028748
EMBL:AADN02028749 EMBL:AADN02068652 IPI:IPI00576331
Ensembl:ENSGALT00000004794 Uniprot:F1NAH6
Length = 607
Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
Identities = 149/370 (40%), Positives = 218/370 (58%)
Query: 70 IPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTF 128
IP P+ SFK+ +P ILR L+ P+PIQ Q P ++SG DMIGIA TG+GKT
Sbjct: 172 IPPPIKSFKE--MKFPAAILRGLKKKGIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTL 229
Query: 129 AFLLPALIHTHLQTT--PISERAGPSVLVMAPTRELATQ----IE---REVNKIDYKGLK 179
F LP ++ Q P S+R GP L++ P+RELA Q IE R + + L+
Sbjct: 230 VFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGIIEYYCRLLQEDSLPPLR 289
Query: 180 -AVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDL 238
A+C+ GG ++ Q+E I+ G H+++ATPGRL D + + + L ++ LDEADRM+D+
Sbjct: 290 CALCI-GGMSVKEQMETIKHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDM 348
Query: 239 GFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQK 298
GFE I Y RQT++ SAT K +Q AK +V P+ +NVG AA+ V Q+
Sbjct: 349 GFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPITINVGRAG-AASLDVVQE 407
Query: 299 IIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQ 358
+ + E+ K +L+E + + V++F +KA V A+ L + ++ +++G Q
Sbjct: 408 VEYVKEEAKMVYLLEC---LQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQ 464
Query: 359 EDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGK 418
E+R A+E G + VATDVAS+GLD P + HVINYD P IE YVHR+GRTGR+G
Sbjct: 465 EERTKAIEAFRDGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGN 524
Query: 419 SGESITLMTR 428
+G + T + +
Sbjct: 525 TGIATTFINK 534
Score = 631 (227.2 bits), Expect = 1.5e-61, P = 1.5e-61
Identities = 145/356 (40%), Positives = 209/356 (58%)
Query: 590 IPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTF 648
IP P+ SFK+ +P ILR L+ P+PIQ Q P ++SG DMIGIA TG+GKT
Sbjct: 172 IPPPIKSFKE--MKFPAAILRGLKKKGIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTL 229
Query: 649 AFLLPALIHTHLQTT--PISERAGPSVLVMAPTRELATQ----IE---REVNKIDYKGLK 699
F LP ++ Q P S+R GP L++ P+RELA Q IE R + + L+
Sbjct: 230 VFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGIIEYYCRLLQEDSLPPLR 289
Query: 700 -AVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDL 758
A+C+ GG ++ Q+E I+ G H+++ATPGRL D + + + L ++ LDEADRM+D+
Sbjct: 290 CALCI-GGMSVKEQMETIKHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDM 348
Query: 759 GFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQK 818
GFE I Y RQT++ SAT K +Q AK +V P+ +NVG AA+ V Q+
Sbjct: 349 GFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPITINVGRAG-AASLDVVQE 407
Query: 819 IIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQ 878
+ + E+ K +L+E + + V++F +KA V A+ L + ++ +++G Q
Sbjct: 408 VEYVKEEAKMVYLLEC---LQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQ 464
Query: 879 EDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
E+R A+E G + VATDVAS+GLD P + HVINYD P IE YVHR+GRTG
Sbjct: 465 EERTKAIEAFRDGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTG 520
>ZFIN|ZDB-GENE-030131-1565 [details] [associations]
symbol:ddx3 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 3" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-1565 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
KO:K11594 HOVERGEN:HBG015893 EMBL:BX545856 IPI:IPI00639693
RefSeq:NP_001119895.1 UniGene:Dr.104653 SMR:B0S6P6
Ensembl:ENSDART00000006867 GeneID:566947 KEGG:dre:566947 CTD:566947
OMA:IIMGNIN NextBio:20888452 Uniprot:B0S6P6
Length = 709
Score = 570 (205.7 bits), Expect = 3.1e-64, Sum P(2) = 3.1e-64
Identities = 127/305 (41%), Positives = 187/305 (61%)
Query: 151 PSVLVMAPTRELATQIEREVNKIDYKGLKAVCV-YGGKEIEPQLEKIREGCHILIATPGR 209
P LV+APTRELA QI E K Y+ CV YGG +I Q+ + GCH+L+ATPGR
Sbjct: 315 PISLVLAPTRELALQIYDEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 374
Query: 210 LNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT----SIYINPNRQTVMTSATWN 265
L D + R I L ++VLDEADRMLD+GFEPQI + ++ +RQT+M SAT+
Sbjct: 375 LVDMMERGKIGLDYCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGSRQTMMFSATFP 434
Query: 266 KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKV 325
K++Q +A+ ++ + + VG + + + +TQK++ ++E++K+ +L++ N +
Sbjct: 435 KEIQILARDFLEEYIFLAVGRVG-STSENITQKVVWVEENDKRSFLLDLL-NATGKDSLT 492
Query: 326 MVFMGRKASVSAMSSDLACQYRK--SC-SLYGDLSQEDREIALEDITSGYARICVATDVA 382
+VF+ K A+ L YR+ +C S++GD SQ DRE AL SG I VAT VA
Sbjct: 493 LVFVETKKGADALEDFL---YREGYACTSIHGDRSQRDREEALHQFRSGRCPIMVATAVA 549
Query: 383 SRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILE 442
+RGLD+ ++ HVIN+D PS IEEYVHR+GRTGR G G + + K+ + +++ IL
Sbjct: 550 ARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFYNDKNSNITKDLLDILV 609
Query: 443 EGGHE 447
E E
Sbjct: 610 EAKQE 614
Score = 539 (194.8 bits), Expect = 1.0e-60, Sum P(2) = 1.0e-60
Identities = 118/272 (43%), Positives = 172/272 (63%)
Query: 671 PSVLVMAPTRELATQIEREVNKIDYKGLKAVCV-YGGKELEPQLEKIREGCHILIATPGR 729
P LV+APTRELA QI E K Y+ CV YGG ++ Q+ + GCH+L+ATPGR
Sbjct: 315 PISLVLAPTRELALQIYDEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 374
Query: 730 LNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT----SIYINPNRQTVMTSATWN 785
L D + R I L ++VLDEADRMLD+GFEPQI + ++ +RQT+M SAT+
Sbjct: 375 LVDMMERGKIGLDYCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGSRQTMMFSATFP 434
Query: 786 KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKV 845
K++Q +A+ ++ + + VG + + + +TQK++ ++E++K+ +L++ N +
Sbjct: 435 KEIQILARDFLEEYIFLAVGRVG-STSENITQKVVWVEENDKRSFLLDLL-NATGKDSLT 492
Query: 846 MVFMGRKASVSAMSSDLACQYRK--SC-SLYGDLSQEDREIALEDITSGYARICVATDVA 902
+VF+ K A+ L YR+ +C S++GD SQ DRE AL SG I VAT VA
Sbjct: 493 LVFVETKKGADALEDFL---YREGYACTSIHGDRSQRDREEALHQFRSGRCPIMVATAVA 549
Query: 903 SRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
+RGLD+ ++ HVIN+D PS IEEYVHR+GRTG
Sbjct: 550 ARGLDISNVKHVINFDLPSDIEEYVHRIGRTG 581
Score = 114 (45.2 bits), Expect = 3.1e-64, Sum P(2) = 3.1e-64
Identities = 28/66 (42%), Positives = 38/66 (57%)
Query: 71 PNPVTSFKQAFQHYPEILRQLENLS-FTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 129
P + SF EI+ LS +T P+P+Q A PI+ + D++ AQTG+GKT A
Sbjct: 219 PGHIESFHDV--DMGEIIMGNITLSRYTRPTPVQKYAIPIIKTKRDLMACAQTGSGKTAA 276
Query: 130 FLLPAL 135
FLLP L
Sbjct: 277 FLLPVL 282
Score = 114 (45.2 bits), Expect = 1.0e-60, Sum P(2) = 1.0e-60
Identities = 28/66 (42%), Positives = 38/66 (57%)
Query: 591 PNPVTSFKQAFQHYPEILRQLENLS-FTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 649
P + SF EI+ LS +T P+P+Q A PI+ + D++ AQTG+GKT A
Sbjct: 219 PGHIESFHDV--DMGEIIMGNITLSRYTRPTPVQKYAIPIIKTKRDLMACAQTGSGKTAA 276
Query: 650 FLLPAL 655
FLLP L
Sbjct: 277 FLLPVL 282
>MGI|MGI:1349406 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
Y-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1349406 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 OrthoDB:EOG47D9FV
CTD:8653 EMBL:AJ007376 EMBL:BC021453 EMBL:L25337 IPI:IPI00134371
RefSeq:NP_036138.1 UniGene:Mm.486436 ProteinModelPortal:Q62095
SMR:Q62095 STRING:Q62095 PhosphoSite:Q62095 PaxDb:Q62095
PRIDE:Q62095 Ensembl:ENSMUST00000091190 GeneID:26900 KEGG:mmu:26900
InParanoid:Q62095 NextBio:304749 Bgee:Q62095 Genevestigator:Q62095
GermOnline:ENSMUSG00000069045 Uniprot:Q62095
Length = 658
Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
Identities = 151/379 (39%), Positives = 224/379 (59%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPAL--IHTH----- 139
I+ +E +T P+P+Q A PI+ D++ AQTG+GKT AFLLP L I+T
Sbjct: 190 IMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEA 249
Query: 140 LQTTPISERAG-----PSVLVMAPTRELATQIEREVNKIDYKGLKAVCV-YGGKEIEPQL 193
L+ + R G P LV+APTRELA QI E K Y+ CV YGG + Q+
Sbjct: 250 LKAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADTVQQI 309
Query: 194 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT--SIYI 251
+ GCH+L+ATPGRL D + R I L ++VLDEADRMLD+GFEPQI + +
Sbjct: 310 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTM 369
Query: 252 NPN--RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKD 309
P R T+M SAT+ K++Q +A+ ++ + + VG + + + +TQK++ ++E +K+
Sbjct: 370 PPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEELDKRS 428
Query: 310 WLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSC-SLYGDLSQEDREIALEDI 368
+L++ N + +VF+ K ++ + L Q R +C S++GD SQ+DRE AL
Sbjct: 429 FLLDLL-NATGKDSLTLVFVETKKGADSLENFLF-QERYACTSIHGDRSQKDREEALHQF 486
Query: 369 TSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTR 428
SG I VAT VA+RGLD+ ++ HVIN+D PS IEEYVHR+GRTGR G G + +
Sbjct: 487 RSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNE 546
Query: 429 KDWSHAHEIIPILEEGGHE 447
++ + +++ +L E E
Sbjct: 547 RNLNITKDLLDLLVEAKQE 565
Score = 625 (225.1 bits), Expect = 7.4e-61, P = 7.4e-61
Identities = 145/346 (41%), Positives = 209/346 (60%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPAL--IHTH----- 659
I+ +E +T P+P+Q A PI+ D++ AQTG+GKT AFLLP L I+T
Sbjct: 190 IMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEA 249
Query: 660 LQTTPISERAG-----PSVLVMAPTRELATQIEREVNKIDYKGLKAVCV-YGGKELEPQL 713
L+ + R G P LV+APTRELA QI E K Y+ CV YGG + Q+
Sbjct: 250 LKAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADTVQQI 309
Query: 714 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT--SIYI 771
+ GCH+L+ATPGRL D + R I L ++VLDEADRMLD+GFEPQI + +
Sbjct: 310 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTM 369
Query: 772 NPN--RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKD 829
P R T+M SAT+ K++Q +A+ ++ + + VG + + + +TQK++ ++E +K+
Sbjct: 370 PPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEELDKRS 428
Query: 830 WLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSC-SLYGDLSQEDREIALEDI 888
+L++ N + +VF+ K ++ + L Q R +C S++GD SQ+DRE AL
Sbjct: 429 FLLDLL-NATGKDSLTLVFVETKKGADSLENFLF-QERYACTSIHGDRSQKDREEALHQF 486
Query: 889 TSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
SG I VAT VA+RGLD+ ++ HVIN+D PS IEEYVHR+GRTG
Sbjct: 487 RSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTG 532
>ASPGD|ASPL0000069536 [details] [associations]
symbol:AN7424 species:162425 "Emericella nidulans"
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268804 KO:K14811 RefSeq:XP_680693.1
GeneID:2869574 KEGG:ani:AN7424.2 OrthoDB:EOG42JS0S Uniprot:Q5AWA6
Length = 488
Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
Identities = 161/429 (37%), Positives = 242/429 (56%)
Query: 27 YKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPE 86
Y + P + N+ +++ F +D S+ + +D D+ P + P+ SF +
Sbjct: 35 YFQSPALDNVPQTEIDKFL---SDHSIKI--TDASADK-PSLR---PIISFSFLPPSNKD 85
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHT-HLQTTPI 145
+ L+ F +P+ IQ+ WP+L +G D+IGIA+TG+GKT AF LP L L+T
Sbjct: 86 LYAPLDG--FASPTAIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKVLDLKTKQK 143
Query: 146 SERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEIEPQLEKIREGCHILI 204
S R P +V++PTRELA QI ++ K K ++ C++GG + + Q E ++ +++
Sbjct: 144 SCR--PLAVVISPTRELAMQIYDQLVKFAEKVDIQVACIFGGVKKDEQREALKSAA-VVV 200
Query: 205 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINP--NRQTVMTSA 262
ATPGRL D + S+DL V ++VLDEADRMLD GFE I K I P RQTVM +A
Sbjct: 201 ATPGRLKDLQNDGSLDLGRVKYLVLDEADRMLDKGFEQDI-KDIISPMPVSKRQTVMFTA 259
Query: 263 TWNKDVQRVAKKYMVNPVKVNVG---SLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMD 319
TW V+ +A +M +PV V +G S D A + Q + ++ EK+ L++ +
Sbjct: 260 TWPPIVRNLASTFMTSPVTVTIGGDPSADPRANSRIKQVVEVVKPHEKEQRLVQILNRHQ 319
Query: 320 EER-DKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVA 378
DKV+ F K + L + K ++GDLSQ++R +LE SG A + VA
Sbjct: 320 RGTPDKVLAFCLYKKEAMRVERLLRTKGFKVAGIHGDLSQQERFRSLEAFKSGAATVLVA 379
Query: 379 TDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEII 438
TDVA+RGLD+P + V+N FP +E+YVHR+GRTGRAG G +ITL T D + + +I
Sbjct: 380 TDVAARGLDIPHVKLVVNVTFPLTVEDYVHRIGRTGRAGADGHAITLFTETDKAQSGALI 439
Query: 439 PILEEGGHE 447
+L+ E
Sbjct: 440 NVLKAANQE 448
Score = 598 (215.6 bits), Expect = 8.9e-58, P = 8.9e-58
Identities = 149/396 (37%), Positives = 224/396 (56%)
Query: 547 YKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPE 606
Y + P + N+ +++ F +D S+ + +D D+ P + P+ SF +
Sbjct: 35 YFQSPALDNVPQTEIDKFL---SDHSIKI--TDASADK-PSLR---PIISFSFLPPSNKD 85
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHT-HLQTTPI 665
+ L+ F +P+ IQ+ WP+L +G D+IGIA+TG+GKT AF LP L L+T
Sbjct: 86 LYAPLDG--FASPTAIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKVLDLKTKQK 143
Query: 666 SERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKELEPQLEKIREGCHILI 724
S R P +V++PTRELA QI ++ K K ++ C++GG + + Q E ++ +++
Sbjct: 144 SCR--PLAVVISPTRELAMQIYDQLVKFAEKVDIQVACIFGGVKKDEQREALKSAA-VVV 200
Query: 725 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINP--NRQTVMTSA 782
ATPGRL D + S+DL V ++VLDEADRMLD GFE I K I P RQTVM +A
Sbjct: 201 ATPGRLKDLQNDGSLDLGRVKYLVLDEADRMLDKGFEQDI-KDIISPMPVSKRQTVMFTA 259
Query: 783 TWNKDVQRVAKKYMVNPVKVNVG---SLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMD 839
TW V+ +A +M +PV V +G S D A + Q + ++ EK+ L++ +
Sbjct: 260 TWPPIVRNLASTFMTSPVTVTIGGDPSADPRANSRIKQVVEVVKPHEKEQRLVQILNRHQ 319
Query: 840 EER-DKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVA 898
DKV+ F K + L + K ++GDLSQ++R +LE SG A + VA
Sbjct: 320 RGTPDKVLAFCLYKKEAMRVERLLRTKGFKVAGIHGDLSQQERFRSLEAFKSGAATVLVA 379
Query: 899 TDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
TDVA+RGLD+P + V+N FP +E+YVHR+GRTG
Sbjct: 380 TDVAARGLDIPHVKLVVNVTFPLTVEDYVHRIGRTG 415
>RGD|1309586 [details] [associations]
symbol:RGD1309586 "similar to probable ATP-dependent RNA
helicase - mouse" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1309586 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 OMA:HIVQECD
OrthoDB:EOG4S7JPR EMBL:CH473985 IPI:IPI00954695
RefSeq:NP_001102328.1 UniGene:Rn.218622 Ensembl:ENSRNOT00000003378
GeneID:364073 KEGG:rno:364073 UCSC:RGD:1309586 CTD:364073
NextBio:684798 Uniprot:D3ZN21
Length = 659
Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
Identities = 148/378 (39%), Positives = 222/378 (58%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPAL--IHTH----- 139
I+ +E +T P+P+Q A PI+ D++ AQTG+GKT AFLLP L I+T
Sbjct: 189 IMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEA 248
Query: 140 LQTTPISERAG-----PSVLVMAPTRELATQIEREVNKIDYKGLKAVCV-YGGKEIEPQL 193
L+ + + G P LV+APTRELA QI E K Y+ CV YGG +I Q+
Sbjct: 249 LRAMKENGKYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQI 308
Query: 194 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT--SIYI 251
+ GCH+L+ATPGRL D + R I L ++VLDEADRMLD+GFEPQI + +
Sbjct: 309 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTM 368
Query: 252 NPN--RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKD 309
P R T+M SAT+ K++Q +A+ ++ + + VG + + + +TQK++ ++E +K+
Sbjct: 369 PPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEEADKRS 427
Query: 310 WLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDIT 369
+L++ N + ++VF+ K ++ L + S++GD SQ DRE AL
Sbjct: 428 FLLDLL-NATGKDSLILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 486
Query: 370 SGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRK 429
SG + I VAT VA+RGLD+ ++ HVIN+D PS IEEYVHR+GRTGR G G + + +
Sbjct: 487 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNER 546
Query: 430 DWSHAHEIIPILEEGGHE 447
+ + +++ +L E E
Sbjct: 547 NINITKDLLDLLVEAKQE 564
Score = 623 (224.4 bits), Expect = 8.4e-63, Sum P(2) = 8.4e-63
Identities = 141/345 (40%), Positives = 207/345 (60%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPAL--IHTH----- 659
I+ +E +T P+P+Q A PI+ D++ AQTG+GKT AFLLP L I+T
Sbjct: 189 IMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEA 248
Query: 660 LQTTPISERAG-----PSVLVMAPTRELATQIEREVNKIDYKGLKAVCV-YGGKELEPQL 713
L+ + + G P LV+APTRELA QI E K Y+ CV YGG ++ Q+
Sbjct: 249 LRAMKENGKYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQI 308
Query: 714 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT--SIYI 771
+ GCH+L+ATPGRL D + R I L ++VLDEADRMLD+GFEPQI + +
Sbjct: 309 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTM 368
Query: 772 NPN--RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKD 829
P R T+M SAT+ K++Q +A+ ++ + + VG + + + +TQK++ ++E +K+
Sbjct: 369 PPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEEADKRS 427
Query: 830 WLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDIT 889
+L++ N + ++VF+ K ++ L + S++GD SQ DRE AL
Sbjct: 428 FLLDLL-NATGKDSLILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 486
Query: 890 SGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
SG + I VAT VA+RGLD+ ++ HVIN+D PS IEEYVHR+GRTG
Sbjct: 487 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTG 531
Score = 41 (19.5 bits), Expect = 8.4e-63, Sum P(2) = 8.4e-63
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 512 GRHIDPEPTMEELMALSDRKERDKWARE 539
GR+I P E S K+ +W+++
Sbjct: 36 GRYIPPHLRNREATKASYDKDSSRWSKD 63
>MGI|MGI:91842 [details] [associations]
symbol:D1Pas1 "DNA segment, Chr 1, Pasteur Institute 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0030154 "cell differentiation" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:91842
GO:GO:0007275 GO:GO:0005524 GO:GO:0030154 GO:GO:0003677
GO:GO:0007283 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
KO:K11594 HOVERGEN:HBG015893 EMBL:J04847 EMBL:AK029542
IPI:IPI00133708 PIR:A32378 RefSeq:NP_149068.1 UniGene:Mm.108054
ProteinModelPortal:P16381 SMR:P16381 IntAct:P16381 STRING:P16381
PhosphoSite:P16381 PaxDb:P16381 PRIDE:P16381
Ensembl:ENSMUST00000045108 GeneID:110957 KEGG:mmu:110957 CTD:110957
InParanoid:P16381 OMA:HIVQECD OrthoDB:EOG4S7JPR NextBio:365019
Bgee:P16381 CleanEx:MM_D1PAS1 Genevestigator:P16381
GermOnline:ENSMUSG00000039224 Uniprot:P16381
Length = 660
Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
Identities = 148/378 (39%), Positives = 222/378 (58%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPAL--IHTH----- 139
I+ +E +T P+P+Q A PI+ D++ AQTG+GKT AFLLP L I+T
Sbjct: 190 IMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEA 249
Query: 140 LQTTPISERAG-----PSVLVMAPTRELATQIEREVNKIDYKGLKAVCV-YGGKEIEPQL 193
L+ + + G P LV+APTRELA QI E K Y+ CV YGG +I Q+
Sbjct: 250 LRAMKENGKYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQI 309
Query: 194 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT--SIYI 251
+ GCH+L+ATPGRL D + R I L ++VLDEADRMLD+GFEPQI + +
Sbjct: 310 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTM 369
Query: 252 NPN--RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKD 309
P R T+M SAT+ K++Q +A+ ++ + + VG + + + +TQK++ ++E +K+
Sbjct: 370 PPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEEADKRS 428
Query: 310 WLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDIT 369
+L++ N + ++VF+ K ++ L + S++GD SQ DRE AL
Sbjct: 429 FLLDLL-NATGKDSLILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 487
Query: 370 SGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRK 429
SG + I VAT VA+RGLD+ ++ HVIN+D PS IEEYVHR+GRTGR G G + + +
Sbjct: 488 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNER 547
Query: 430 DWSHAHEIIPILEEGGHE 447
+ + +++ +L E E
Sbjct: 548 NINITKDLLDLLVEAKQE 565
Score = 623 (224.4 bits), Expect = 1.3e-60, P = 1.3e-60
Identities = 141/345 (40%), Positives = 207/345 (60%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPAL--IHTH----- 659
I+ +E +T P+P+Q A PI+ D++ AQTG+GKT AFLLP L I+T
Sbjct: 190 IMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEA 249
Query: 660 LQTTPISERAG-----PSVLVMAPTRELATQIEREVNKIDYKGLKAVCV-YGGKELEPQL 713
L+ + + G P LV+APTRELA QI E K Y+ CV YGG ++ Q+
Sbjct: 250 LRAMKENGKYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQI 309
Query: 714 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT--SIYI 771
+ GCH+L+ATPGRL D + R I L ++VLDEADRMLD+GFEPQI + +
Sbjct: 310 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTM 369
Query: 772 NPN--RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKD 829
P R T+M SAT+ K++Q +A+ ++ + + VG + + + +TQK++ ++E +K+
Sbjct: 370 PPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEEADKRS 428
Query: 830 WLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDIT 889
+L++ N + ++VF+ K ++ L + S++GD SQ DRE AL
Sbjct: 429 FLLDLL-NATGKDSLILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 487
Query: 890 SGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
SG + I VAT VA+RGLD+ ++ HVIN+D PS IEEYVHR+GRTG
Sbjct: 488 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTG 532
>DICTYBASE|DDB_G0293064 [details] [associations]
symbol:DDB_G0293064 species:44689 "Dictyostelium
discoideum" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0293064 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AAFI02000199
RefSeq:XP_629301.1 ProteinModelPortal:Q54CB8
EnsemblProtists:DDB0191757 GeneID:8629024 KEGG:ddi:DDB_G0293064
InParanoid:Q54CB8 OMA:VLYWSAT Uniprot:Q54CB8
Length = 573
Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
Identities = 144/407 (35%), Positives = 230/407 (56%)
Query: 30 DPEVANMTPEQVEAFRKKNNDISVS---VVTSDGQIDENPDFQIPNPVTSFKQAFQHYPE 86
D E+ NM P + D + + + I + +F +P P+ + + +
Sbjct: 92 DDELKNMAPIRKRLIDLPTEDQQETMDFIKEFEISIKKENNFYLPKPIDTIESV--PFQS 149
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 146
++ + F P+P+Q+ WPI +SG DM+GI++TG+GKT +F+LPA+ H Q S
Sbjct: 150 TIKNFLSKKFEKPTPVQSLGWPIALSGSDMLGISKTGSGKTLSFILPAIEHILAQPRQ-S 208
Query: 147 ERAGPSVLVMAPTRELATQIEREVNK-IDYKGLKAVCVYGGKEIEPQLEKIREGCHILIA 205
GPSVLV+APTRELA QI +E + + ++ +YGG Q ++ I++
Sbjct: 209 YYPGPSVLVVAPTRELANQINQEAEQYLRLVNIEIATIYGGAPRRSQQLQLSRRPKIVVG 268
Query: 206 TPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWN 265
TPGR+ DF+ + LK +SF+V+DEADR++++GFE QI+ I P+RQ + SATW
Sbjct: 269 TPGRIIDFMESGDLSLKNISFLVVDEADRLMEMGFEQQIDGIFNSIRPDRQVLYWSATWP 328
Query: 266 KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDED-EKKDWLMEFFDNM--DEER 322
K V A+K++ P+++ +GS L A ++QK I+ D +K D LM+ + +E+
Sbjct: 329 KKVSSFAEKHIRTPIRLQIGSSQLTANKNISQKFKIVPTDADKVDALMDTLGEIYSADEK 388
Query: 323 DKVMVFMGRKASVSAMSSDLACQYR--KSCSLYGDLSQEDREIALEDITSGYARICVATD 380
+ ++F K + + + +L+GD+ Q RE ++D + I VATD
Sbjct: 389 AQTLIFTMTKKGADTLKHYIQSNGDNVRIDTLHGDVDQNRRERIVQDFKNKRLDIVVATD 448
Query: 381 VASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMT 427
VASRGLD+ ++HVIN+ PS E YVHR+GRTGRAG G S ++++
Sbjct: 449 VASRGLDIKGISHVINFSLPSDCETYVHRIGRTGRAGALGTSHSILS 495
Score = 628 (226.1 bits), Expect = 3.3e-61, P = 3.3e-61
Identities = 139/394 (35%), Positives = 221/394 (56%)
Query: 550 DPEVANMTPEQVEAFRKKNNDISVS---VVTSDGQIDENPDFQIPNPVTSFKQAFQHYPE 606
D E+ NM P + D + + + I + +F +P P+ + + +
Sbjct: 92 DDELKNMAPIRKRLIDLPTEDQQETMDFIKEFEISIKKENNFYLPKPIDTIESV--PFQS 149
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 666
++ + F P+P+Q+ WPI +SG DM+GI++TG+GKT +F+LPA+ H Q S
Sbjct: 150 TIKNFLSKKFEKPTPVQSLGWPIALSGSDMLGISKTGSGKTLSFILPAIEHILAQPRQ-S 208
Query: 667 ERAGPSVLVMAPTRELATQIEREVNK-IDYKGLKAVCVYGGKELEPQLEKIREGCHILIA 725
GPSVLV+APTRELA QI +E + + ++ +YGG Q ++ I++
Sbjct: 209 YYPGPSVLVVAPTRELANQINQEAEQYLRLVNIEIATIYGGAPRRSQQLQLSRRPKIVVG 268
Query: 726 TPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWN 785
TPGR+ DF+ + LK +SF+V+DEADR++++GFE QI+ I P+RQ + SATW
Sbjct: 269 TPGRIIDFMESGDLSLKNISFLVVDEADRLMEMGFEQQIDGIFNSIRPDRQVLYWSATWP 328
Query: 786 KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDED-EKKDWLMEFFDNM--DEER 842
K V A+K++ P+++ +GS L A ++QK I+ D +K D LM+ + +E+
Sbjct: 329 KKVSSFAEKHIRTPIRLQIGSSQLTANKNISQKFKIVPTDADKVDALMDTLGEIYSADEK 388
Query: 843 DKVMVFMGRKASVSAMSSDLACQYR--KSCSLYGDLSQEDREIALEDITSGYARICVATD 900
+ ++F K + + + +L+GD+ Q RE ++D + I VATD
Sbjct: 389 AQTLIFTMTKKGADTLKHYIQSNGDNVRIDTLHGDVDQNRRERIVQDFKNKRLDIVVATD 448
Query: 901 VASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
VASRGLD+ ++HVIN+ PS E YVHR+GRTG
Sbjct: 449 VASRGLDIKGISHVINFSLPSDCETYVHRIGRTG 482
>UNIPROTKB|D3IVZ2 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 EMBL:DAAA02075532
EMBL:GQ259590 IPI:IPI00955537 UniGene:Bt.89461
Ensembl:ENSBTAT00000065838 OMA:MSHEAVK Uniprot:D3IVZ2
Length = 661
Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
Identities = 149/378 (39%), Positives = 220/378 (58%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPAL--IHTH----- 139
I+ +E +T P+P+Q A PI+ D++ AQTG+GKT AFLLP L I+T
Sbjct: 191 IMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEA 250
Query: 140 LQTTPISERAG-----PSVLVMAPTRELATQIEREVNKIDYKGLKAVCV-YGGKEIEPQL 193
L+ S R G P LV+APTRELA QI E K Y+ CV YGG +I Q+
Sbjct: 251 LKAVKESGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVLPCVVYGGADIGQQI 310
Query: 194 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT--SIYI 251
+ GCH+L+ATPGRL D + R I L ++VLDEADRMLD+GFEPQI + +
Sbjct: 311 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIIEQDTM 370
Query: 252 NPN--RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKD 309
P R T+M SAT+ K++Q +A+ ++ + + VG + + + +TQK++ ++E +K+
Sbjct: 371 PPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEEADKRS 429
Query: 310 WLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDIT 369
+L++ N +VF+ K ++ L + S++GD SQ DRE AL
Sbjct: 430 FLLDLL-NATGTDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 488
Query: 370 SGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRK 429
SG + I VAT VA+RGLD+ ++ HVIN+D P IEEYVHR+GRTGR G G + + +
Sbjct: 489 SGKSPILVATAVAARGLDISNVKHVINFDLPGDIEEYVHRIGRTGRVGNLGLATSFFNER 548
Query: 430 DWSHAHEIIPILEEGGHE 447
+ + + +++ +L E E
Sbjct: 549 NINISKDLLDLLVEAKQE 566
Score = 621 (223.7 bits), Expect = 2.2e-60, P = 2.2e-60
Identities = 142/345 (41%), Positives = 204/345 (59%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPAL--IHTH----- 659
I+ +E +T P+P+Q A PI+ D++ AQTG+GKT AFLLP L I+T
Sbjct: 191 IMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEA 250
Query: 660 LQTTPISERAG-----PSVLVMAPTRELATQIEREVNKIDYKGLKAVCV-YGGKELEPQL 713
L+ S R G P LV+APTRELA QI E K Y+ CV YGG ++ Q+
Sbjct: 251 LKAVKESGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVLPCVVYGGADIGQQI 310
Query: 714 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT--SIYI 771
+ GCH+L+ATPGRL D + R I L ++VLDEADRMLD+GFEPQI + +
Sbjct: 311 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIIEQDTM 370
Query: 772 NPN--RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKD 829
P R T+M SAT+ K++Q +A+ ++ + + VG + + + +TQK++ ++E +K+
Sbjct: 371 PPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEEADKRS 429
Query: 830 WLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDIT 889
+L++ N +VF+ K ++ L + S++GD SQ DRE AL
Sbjct: 430 FLLDLL-NATGTDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 488
Query: 890 SGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
SG + I VAT VA+RGLD+ ++ HVIN+D P IEEYVHR+GRTG
Sbjct: 489 SGKSPILVATAVAARGLDISNVKHVINFDLPGDIEEYVHRIGRTG 533
>ZFIN|ZDB-GENE-030131-6215 [details] [associations]
symbol:ddx23 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 23" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-6215
GO:GO:0005524 GO:GO:0003676 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
CTD:9416 HOGENOM:HOG000268796 HOVERGEN:HBG102054 OrthoDB:EOG46T312
EMBL:CR936486 EMBL:CR354537 EMBL:BC060524 IPI:IPI00509665
RefSeq:NP_956176.1 UniGene:Dr.78688 STRING:Q6P9Z2
Ensembl:ENSDART00000019620 GeneID:334283 KEGG:dre:334283
InParanoid:Q6P9Z2 NextBio:20810336 Uniprot:Q6P9Z2
Length = 807
Score = 389 (142.0 bits), Expect = 5.7e-58, Sum P(4) = 5.7e-58
Identities = 86/194 (44%), Positives = 119/194 (61%)
Query: 589 QIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTF 648
+IPNP+ ++K+ + P IL +E + P+PIQ QA PI + D+IG+A+TG+GKT
Sbjct: 372 KIPNPIRNWKE-YSLPPHILEVIEKCGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTA 430
Query: 649 AFLLPALIHTHLQTTPISERA-----GPSVLVMAPTRELATQIEREVNKIDYK-GLKAVC 702
AFL+P L+ + T P +R GP +++APTRELA QIE E K G++ V
Sbjct: 431 AFLIPLLVW--ITTLPKIDRIEDSDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVA 488
Query: 703 VYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEP 762
V GG E Q ++R GC I+IATPGRL D + + L ++VVLDEADRM+D+GFEP
Sbjct: 489 VIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEP 548
Query: 763 QINKTSIYINPNRQ 776
+ K YI Q
Sbjct: 549 DVQKILEYIPVTNQ 562
Score = 388 (141.6 bits), Expect = 8.0e-64, Sum P(2) = 8.0e-64
Identities = 86/194 (44%), Positives = 119/194 (61%)
Query: 69 QIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTF 128
+IPNP+ ++K+ + P IL +E + P+PIQ QA PI + D+IG+A+TG+GKT
Sbjct: 372 KIPNPIRNWKE-YSLPPHILEVIEKCGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTA 430
Query: 129 AFLLPALIHTHLQTTPISERA-----GPSVLVMAPTRELATQIEREVNKIDYK-GLKAVC 182
AFL+P L+ + T P +R GP +++APTRELA QIE E K G++ V
Sbjct: 431 AFLIPLLVW--ITTLPKIDRIEDSDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVA 488
Query: 183 VYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEP 242
V GG E Q ++R GC I+IATPGRL D + + L ++VVLDEADRM+D+GFEP
Sbjct: 489 VIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEP 548
Query: 243 QINKTSIYINPNRQ 256
+ K YI Q
Sbjct: 549 DVQKILEYIPVTNQ 562
Score = 347 (127.2 bits), Expect = 8.0e-64, Sum P(2) = 8.0e-64
Identities = 72/183 (39%), Positives = 114/183 (62%)
Query: 255 RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEF 314
RQTVM +AT V+R+A+ Y+ P V +GS V QK+I++ E EK+ L+E
Sbjct: 587 RQTVMFTATMPPAVERLARSYLRRPAVVYIGSAG-KPHERVEQKVILMSEGEKRKKLLEV 645
Query: 315 FDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYAR 374
+ E +++F+ +K ++ L +C+L+G QE RE AL ++ +G
Sbjct: 646 LASGFEP--PIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKD 703
Query: 375 ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHA 434
I VATDVA RG+D+ D++ V+NYD +IE+Y+HR+GRTGRAGKSG ++T +T++D S
Sbjct: 704 ILVATDVAGRGIDIQDVSMVLNYDMAKNIEDYIHRIGRTGRAGKSGVAMTFLTKEDSSVF 763
Query: 435 HEI 437
+++
Sbjct: 764 YDL 766
Score = 294 (108.6 bits), Expect = 5.7e-58, Sum P(4) = 5.7e-58
Identities = 62/160 (38%), Positives = 96/160 (60%)
Query: 775 RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEF 834
RQTVM +AT V+R+A+ Y+ P V +GS V QK+I++ E EK+ L+E
Sbjct: 587 RQTVMFTATMPPAVERLARSYLRRPAVVYIGSAG-KPHERVEQKVILMSEGEKRKKLLEV 645
Query: 835 FDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYAR 894
+ E +++F+ +K ++ L +C+L+G QE RE AL ++ +G
Sbjct: 646 LASGFEP--PIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKD 703
Query: 895 ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
I VATDVA RG+D+ D++ V+NYD +IE+Y+HR+GRTG
Sbjct: 704 ILVATDVAGRGIDIQDVSMVLNYDMAKNIEDYIHRIGRTG 743
Score = 45 (20.9 bits), Expect = 5.7e-58, Sum P(4) = 5.7e-58
Identities = 16/70 (22%), Positives = 36/70 (51%)
Query: 292 THTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCS 351
T + + + + D +D +++ + + +E+ +V ++ GR ++ + DL Q R
Sbjct: 251 TRHLNDRKFVFEWDASEDTSIDY-NPIYKEKHQVHLY-GR-GFIAGI--DLKQQKRDQSR 305
Query: 352 LYGDLSQEDR 361
YGDL ++ R
Sbjct: 306 FYGDLMEKRR 315
Score = 41 (19.5 bits), Expect = 5.6e-21, Sum P(4) = 5.6e-21
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 381 VASRGLDVPD-LTHVINYDFPSHIEEYVHRVG 411
+ ++G +P+ + + Y P HI E + + G
Sbjct: 366 ITTKGGKIPNPIRNWKEYSLPPHILEVIEKCG 397
Score = 37 (18.1 bits), Expect = 5.7e-58, Sum P(4) = 5.7e-58
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 419 SGESITLMTRKDWSHAHEIIPILEEGG 445
S + + MT +DW E I +GG
Sbjct: 345 SQKKLDEMTDRDWRIFREDYSITTKGG 371
Score = 37 (18.1 bits), Expect = 2.0e-57, Sum P(3) = 2.0e-57
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 509 IDLGRHIDPEPTMEELMALSDRKERDKWAREP-KIIKN 545
ID+G D + +E + + + + D A +P K+++N
Sbjct: 542 IDMGFEPDVQKILEYIPVTNQKPDTDD-AEDPEKMMQN 578
>UNIPROTKB|F1MYC6 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0032880 "regulation of protein localization"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000237 "leptotene" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0032880 GO:GO:0007283 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 IPI:IPI00689085 UniGene:Bt.35994
OMA:RDAGESN GO:GO:0000237 EMBL:DAAA02050339 EMBL:DAAA02050337
EMBL:DAAA02050338 EMBL:JX437185 Ensembl:ENSBTAT00000011682
Uniprot:F1MYC6
Length = 729
Score = 633 (227.9 bits), Expect = 9.0e-64, Sum P(2) = 9.0e-64
Identities = 147/384 (38%), Positives = 227/384 (59%)
Query: 71 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 130
P + +F++A + + +T +P+Q + PI+ G D++ AQTG+GKT AF
Sbjct: 286 PPAILTFEEA-NLCQTLNNNIAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTGSGKTAAF 344
Query: 131 LLPALIHTH---LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGG 186
LLP L H + + E P +++APTREL QI E K + ++AV +YGG
Sbjct: 345 LLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGG 404
Query: 187 KEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINK 246
++ + +I +GC+IL ATPGRL D + + I L+ V ++VLDEADRMLD+GF P++ K
Sbjct: 405 TQLGHSIRQIVQGCNILCATPGRLMDVIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKK 464
Query: 247 T-SIYINPN---RQTVMTSATWNKDVQRVAKKYMV-NPVKVNVGSLDLAATHTVTQKIII 301
S P+ RQT+M SAT+ +++QR+A +++ N + V VG + A V Q I+
Sbjct: 465 LISCPGMPSKEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVG-GACRDVQQTILQ 523
Query: 302 LDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSC-SLYGDLSQED 360
+ + K++ L+E N+ +ER MVF+ K +++ L CQ + S S++GD Q +
Sbjct: 524 VGQYSKREKLVEILRNIGDER--TMVFVETKKKADFIATFL-CQEKISTTSIHGDREQRE 580
Query: 361 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSG 420
RE AL D G + VAT VA+RGLD+ ++ HVIN+D PS I+EYVHR+GRTGR G +G
Sbjct: 581 REQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTG 640
Query: 421 ESITLMT-RKDWSHAHEIIPILEE 443
+I+ D A ++ +L +
Sbjct: 641 RAISFFDLESDSQLAQPLVKVLSD 664
Score = 605 (218.0 bits), Expect = 6.2e-61, Sum P(2) = 6.2e-61
Identities = 141/354 (39%), Positives = 213/354 (60%)
Query: 591 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 650
P + +F++A + + +T +P+Q + PI+ G D++ AQTG+GKT AF
Sbjct: 286 PPAILTFEEA-NLCQTLNNNIAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTGSGKTAAF 344
Query: 651 LLPALIHTH---LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGG 706
LLP L H + + E P +++APTREL QI E K + ++AV +YGG
Sbjct: 345 LLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGG 404
Query: 707 KELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINK 766
+L + +I +GC+IL ATPGRL D + + I L+ V ++VLDEADRMLD+GF P++ K
Sbjct: 405 TQLGHSIRQIVQGCNILCATPGRLMDVIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKK 464
Query: 767 T-SIYINPN---RQTVMTSATWNKDVQRVAKKYMV-NPVKVNVGSLDLAATHTVTQKIII 821
S P+ RQT+M SAT+ +++QR+A +++ N + V VG + A V Q I+
Sbjct: 465 LISCPGMPSKEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVG-GACRDVQQTILQ 523
Query: 822 LDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSC-SLYGDLSQED 880
+ + K++ L+E N+ +ER MVF+ K +++ L CQ + S S++GD Q +
Sbjct: 524 VGQYSKREKLVEILRNIGDER--TMVFVETKKKADFIATFL-CQEKISTTSIHGDREQRE 580
Query: 881 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
RE AL D G + VAT VA+RGLD+ ++ HVIN+D PS I+EYVHR+GRTG
Sbjct: 581 REQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTG 634
Score = 44 (20.5 bits), Expect = 6.2e-61, Sum P(2) = 6.2e-61
Identities = 14/59 (23%), Positives = 26/59 (44%)
Query: 514 HIDPEPTMEELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDIS 572
+I P P +E + + + + I+ V DP A +T E+ + NN+I+
Sbjct: 248 YIPPPPPEDEDSIFAHYQTGINFDKYDTILVEVSGHDPPPAILTFEEANLCQTLNNNIA 306
Score = 38 (18.4 bits), Expect = 9.0e-64, Sum P(2) = 9.0e-64
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 22 IIKNVYKEDPEVANMTPEQVEAFRKKNNDIS 52
I+ V DP A +T E+ + NN+I+
Sbjct: 276 ILVEVSGHDPPPAILTFEEANLCQTLNNNIA 306
>UNIPROTKB|Q5W5U4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 EMBL:AF541971
IPI:IPI00689085 RefSeq:NP_001007820.1 UniGene:Bt.35994
ProteinModelPortal:Q5W5U4 SMR:Q5W5U4 STRING:Q5W5U4 PRIDE:Q5W5U4
GeneID:493725 KEGG:bta:493725 CTD:54514 InParanoid:Q5W5U4 KO:K13982
OrthoDB:EOG4W6NVF NextBio:20865468 GO:GO:0071547 Uniprot:Q5W5U4
Length = 729
Score = 633 (227.9 bits), Expect = 9.0e-64, Sum P(2) = 9.0e-64
Identities = 147/384 (38%), Positives = 227/384 (59%)
Query: 71 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 130
P + +F++A + + +T +P+Q + PI+ G D++ AQTG+GKT AF
Sbjct: 286 PPAILTFEEA-NLCQTLNNNIAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTGSGKTAAF 344
Query: 131 LLPALIHTH---LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGG 186
LLP L H + + E P +++APTREL QI E K + ++AV +YGG
Sbjct: 345 LLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGG 404
Query: 187 KEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINK 246
++ + +I +GC+IL ATPGRL D + + I L+ V ++VLDEADRMLD+GF P++ K
Sbjct: 405 TQLGHSIRQIVQGCNILCATPGRLMDVIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKK 464
Query: 247 T-SIYINPN---RQTVMTSATWNKDVQRVAKKYMV-NPVKVNVGSLDLAATHTVTQKIII 301
S P+ RQT+M SAT+ +++QR+A +++ N + V VG + A V Q I+
Sbjct: 465 LISCPGMPSKEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVG-GACRDVQQTILQ 523
Query: 302 LDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSC-SLYGDLSQED 360
+ + K++ L+E N+ +ER MVF+ K +++ L CQ + S S++GD Q +
Sbjct: 524 VGQYSKREKLVEILRNIGDER--TMVFVETKKKADFIATFL-CQEKISTTSIHGDREQRE 580
Query: 361 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSG 420
RE AL D G + VAT VA+RGLD+ ++ HVIN+D PS I+EYVHR+GRTGR G +G
Sbjct: 581 REQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTG 640
Query: 421 ESITLMT-RKDWSHAHEIIPILEE 443
+I+ D A ++ +L +
Sbjct: 641 RAISFFDLESDSQLAQPLVKVLSD 664
Score = 605 (218.0 bits), Expect = 6.2e-61, Sum P(2) = 6.2e-61
Identities = 141/354 (39%), Positives = 213/354 (60%)
Query: 591 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 650
P + +F++A + + +T +P+Q + PI+ G D++ AQTG+GKT AF
Sbjct: 286 PPAILTFEEA-NLCQTLNNNIAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTGSGKTAAF 344
Query: 651 LLPALIHTH---LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGG 706
LLP L H + + E P +++APTREL QI E K + ++AV +YGG
Sbjct: 345 LLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGG 404
Query: 707 KELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINK 766
+L + +I +GC+IL ATPGRL D + + I L+ V ++VLDEADRMLD+GF P++ K
Sbjct: 405 TQLGHSIRQIVQGCNILCATPGRLMDVIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKK 464
Query: 767 T-SIYINPN---RQTVMTSATWNKDVQRVAKKYMV-NPVKVNVGSLDLAATHTVTQKIII 821
S P+ RQT+M SAT+ +++QR+A +++ N + V VG + A V Q I+
Sbjct: 465 LISCPGMPSKEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVG-GACRDVQQTILQ 523
Query: 822 LDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSC-SLYGDLSQED 880
+ + K++ L+E N+ +ER MVF+ K +++ L CQ + S S++GD Q +
Sbjct: 524 VGQYSKREKLVEILRNIGDER--TMVFVETKKKADFIATFL-CQEKISTTSIHGDREQRE 580
Query: 881 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
RE AL D G + VAT VA+RGLD+ ++ HVIN+D PS I+EYVHR+GRTG
Sbjct: 581 REQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTG 634
Score = 44 (20.5 bits), Expect = 6.2e-61, Sum P(2) = 6.2e-61
Identities = 14/59 (23%), Positives = 26/59 (44%)
Query: 514 HIDPEPTMEELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDIS 572
+I P P +E + + + + I+ V DP A +T E+ + NN+I+
Sbjct: 248 YIPPPPPEDEDSIFAHYQTGINFDKYDTILVEVSGHDPPPAILTFEEANLCQTLNNNIA 306
Score = 38 (18.4 bits), Expect = 9.0e-64, Sum P(2) = 9.0e-64
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 22 IIKNVYKEDPEVANMTPEQVEAFRKKNNDIS 52
I+ V DP A +T E+ + NN+I+
Sbjct: 276 ILVEVSGHDPPPAILTFEEANLCQTLNNNIA 306
>UNIPROTKB|G5E631 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654
OMA:KYERGGN EMBL:DAAA02073612 RefSeq:NP_001179891.1 UniGene:Bt.9783
PRIDE:G5E631 Ensembl:ENSBTAT00000050399 GeneID:510093
KEGG:bta:510093 NextBio:20869274 Uniprot:G5E631
Length = 661
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 147/378 (38%), Positives = 219/378 (57%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH------- 139
I+ +E +T P+P+Q A PI+ D++ AQTG+GKT AFLLP L +
Sbjct: 190 IMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEA 249
Query: 140 LQTTPISERAG-----PSVLVMAPTRELATQIEREVNKIDYKGLKAVCV-YGGKEIEPQL 193
L+ + R G P LV+APTRELA QI E K Y+ CV YGG +I Q+
Sbjct: 250 LRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQI 309
Query: 194 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT--SIYI 251
+ GCH+L+ATPGRL D + R I L ++VLDEADRMLD+GFEPQI + +
Sbjct: 310 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTM 369
Query: 252 NPN--RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKD 309
P R T+M SAT+ K++Q +A+ ++ + + VG + + + +TQK++ ++E +K+
Sbjct: 370 PPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEESDKRS 428
Query: 310 WLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDIT 369
+L++ N + +VF+ K ++ L + S++GD SQ DRE AL
Sbjct: 429 FLLDLL-NATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 487
Query: 370 SGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRK 429
SG + I VAT VA+RGLD+ ++ HVIN+D PS IEEYVHR+GRTGR G G + + +
Sbjct: 488 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNER 547
Query: 430 DWSHAHEIIPILEEGGHE 447
+ + +++ +L E E
Sbjct: 548 NINITKDLLDLLVEAKQE 565
Score = 621 (223.7 bits), Expect = 2.2e-60, P = 2.2e-60
Identities = 140/345 (40%), Positives = 204/345 (59%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH------- 659
I+ +E +T P+P+Q A PI+ D++ AQTG+GKT AFLLP L +
Sbjct: 190 IMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEA 249
Query: 660 LQTTPISERAG-----PSVLVMAPTRELATQIEREVNKIDYKGLKAVCV-YGGKELEPQL 713
L+ + R G P LV+APTRELA QI E K Y+ CV YGG ++ Q+
Sbjct: 250 LRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQI 309
Query: 714 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT--SIYI 771
+ GCH+L+ATPGRL D + R I L ++VLDEADRMLD+GFEPQI + +
Sbjct: 310 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTM 369
Query: 772 NPN--RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKD 829
P R T+M SAT+ K++Q +A+ ++ + + VG + + + +TQK++ ++E +K+
Sbjct: 370 PPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEESDKRS 428
Query: 830 WLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDIT 889
+L++ N + +VF+ K ++ L + S++GD SQ DRE AL
Sbjct: 429 FLLDLL-NATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 487
Query: 890 SGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
SG + I VAT VA+RGLD+ ++ HVIN+D PS IEEYVHR+GRTG
Sbjct: 488 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTG 532
>UNIPROTKB|J9P0V9 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654 EMBL:AAEX03026295
RefSeq:XP_861268.1 Ensembl:ENSCAFT00000045177 GeneID:480886
KEGG:cfa:480886 Uniprot:J9P0V9
Length = 662
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 147/378 (38%), Positives = 219/378 (57%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH------- 139
I+ +E +T P+P+Q A PI+ D++ AQTG+GKT AFLLP L +
Sbjct: 191 IMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEA 250
Query: 140 LQTTPISERAG-----PSVLVMAPTRELATQIEREVNKIDYKGLKAVCV-YGGKEIEPQL 193
L+ + R G P LV+APTRELA QI E K Y+ CV YGG +I Q+
Sbjct: 251 LRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQI 310
Query: 194 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT--SIYI 251
+ GCH+L+ATPGRL D + R I L ++VLDEADRMLD+GFEPQI + +
Sbjct: 311 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTM 370
Query: 252 NPN--RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKD 309
P R T+M SAT+ K++Q +A+ ++ + + VG + + + +TQK++ ++E +K+
Sbjct: 371 PPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEESDKRS 429
Query: 310 WLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDIT 369
+L++ N + +VF+ K ++ L + S++GD SQ DRE AL
Sbjct: 430 FLLDLL-NATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 488
Query: 370 SGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRK 429
SG + I VAT VA+RGLD+ ++ HVIN+D PS IEEYVHR+GRTGR G G + + +
Sbjct: 489 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNER 548
Query: 430 DWSHAHEIIPILEEGGHE 447
+ + +++ +L E E
Sbjct: 549 NINITKDLLDLLVEAKQE 566
Score = 621 (223.7 bits), Expect = 2.2e-60, P = 2.2e-60
Identities = 140/345 (40%), Positives = 204/345 (59%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH------- 659
I+ +E +T P+P+Q A PI+ D++ AQTG+GKT AFLLP L +
Sbjct: 191 IMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEA 250
Query: 660 LQTTPISERAG-----PSVLVMAPTRELATQIEREVNKIDYKGLKAVCV-YGGKELEPQL 713
L+ + R G P LV+APTRELA QI E K Y+ CV YGG ++ Q+
Sbjct: 251 LRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQI 310
Query: 714 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT--SIYI 771
+ GCH+L+ATPGRL D + R I L ++VLDEADRMLD+GFEPQI + +
Sbjct: 311 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTM 370
Query: 772 NPN--RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKD 829
P R T+M SAT+ K++Q +A+ ++ + + VG + + + +TQK++ ++E +K+
Sbjct: 371 PPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEESDKRS 429
Query: 830 WLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDIT 889
+L++ N + +VF+ K ++ L + S++GD SQ DRE AL
Sbjct: 430 FLLDLL-NATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 488
Query: 890 SGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
SG + I VAT VA+RGLD+ ++ HVIN+D PS IEEYVHR+GRTG
Sbjct: 489 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTG 533
>UNIPROTKB|O00571 [details] [associations]
symbol:DDX3X "ATP-dependent RNA helicase DDX3X"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0030307 "positive
regulation of cell growth" evidence=IMP] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IDA] [GO:1900087
"positive regulation of G1/S transition of mitotic cell cycle"
evidence=IMP] [GO:0045948 "positive regulation of translational
initiation" evidence=IMP] [GO:0031333 "negative regulation of
protein complex assembly" evidence=IDA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IMP] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0071470 "cellular response to osmotic
stress" evidence=IDA] [GO:0071243 "cellular response to
arsenic-containing substance" evidence=IDA] [GO:2001243 "negative
regulation of intrinsic apoptotic signaling pathway" evidence=IMP]
[GO:0007059 "chromosome segregation" evidence=IMP] [GO:0022627
"cytosolic small ribosomal subunit" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031369 "translation
initiation factor binding" evidence=IDA] [GO:0042256 "mature
ribosome assembly" evidence=IMP] [GO:0043024 "ribosomal small
subunit binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0009615 "response to virus" evidence=IDA] [GO:0007243
"intracellular protein kinase cascade" evidence=IDA] [GO:0032728
"positive regulation of interferon-beta production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=IMP] [GO:0071651
"positive regulation of chemokine (C-C motif) ligand 5 production"
evidence=TAS] [GO:0035613 "RNA stem-loop binding" evidence=IDA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IDA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IDA] [GO:0030308 "negative
regulation of cell growth" evidence=IDA] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043154 "negative regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IMP] [GO:0097193 "intrinsic apoptotic signaling pathway"
evidence=IMP] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IMP]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006200 "ATP catabolic process" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0019048
GO:GO:0043066 GO:GO:0043154 GO:GO:0030307 GO:GO:0007059
GO:GO:0030308 GO:GO:0005741 GO:GO:0017148 GO:GO:0003677
GO:GO:0031333 GO:GO:0016607 GO:GO:0045944 GO:GO:0045087
GO:GO:0007243 GO:GO:0006351 GO:GO:0009615 GO:GO:0043065
GO:GO:0048027 GO:GO:0043280 GO:GO:0071470 GO:GO:0004003
GO:GO:0097193 GO:GO:1900087 GO:GO:0008134 EMBL:CH471141
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
KO:K11594 HOVERGEN:HBG015893 EMBL:U50553 EMBL:AF061337
EMBL:AF000983 EMBL:AF000982 EMBL:AK291153 EMBL:AK304689
EMBL:AL391647 EMBL:Z93015 EMBL:BC011819 IPI:IPI00215637
IPI:IPI00985384 RefSeq:NP_001180346.1 RefSeq:NP_001347.3
UniGene:Hs.380774 PDB:2I4I PDB:2JGN PDB:3JRV PDBsum:2I4I
PDBsum:2JGN PDBsum:3JRV ProteinModelPortal:O00571 SMR:O00571
DIP:DIP-27551N IntAct:O00571 MINT:MINT-93217 STRING:O00571
PhosphoSite:O00571 REPRODUCTION-2DPAGE:IPI00215637
SWISS-2DPAGE:O00571 PaxDb:O00571 PeptideAtlas:O00571 PRIDE:O00571
Ensembl:ENST00000399959 Ensembl:ENST00000457138 GeneID:1654
KEGG:hsa:1654 UCSC:uc004dfe.3 CTD:1654 GeneCards:GC0XP041192
HGNC:HGNC:2745 HPA:HPA001648 HPA:HPA005631 MIM:300160
neXtProt:NX_O00571 PharmGKB:PA27216 InParanoid:O00571 OMA:KYERGGN
OrthoDB:EOG47D9FV PhylomeDB:O00571 BindingDB:O00571
ChEMBL:CHEMBL5553 ChiTaRS:DDX3X EvolutionaryTrace:O00571
GenomeRNAi:1654 NextBio:6810 ArrayExpress:O00571 Bgee:O00571
CleanEx:HS_DDX3X Genevestigator:O00571 GermOnline:ENSG00000124487
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 GO:GO:0071651
GO:GO:0032728 Uniprot:O00571
Length = 662
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 147/378 (38%), Positives = 219/378 (57%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH------- 139
I+ +E +T P+P+Q A PI+ D++ AQTG+GKT AFLLP L +
Sbjct: 191 IMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEA 250
Query: 140 LQTTPISERAG-----PSVLVMAPTRELATQIEREVNKIDYKGLKAVCV-YGGKEIEPQL 193
L+ + R G P LV+APTRELA QI E K Y+ CV YGG +I Q+
Sbjct: 251 LRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQI 310
Query: 194 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT--SIYI 251
+ GCH+L+ATPGRL D + R I L ++VLDEADRMLD+GFEPQI + +
Sbjct: 311 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTM 370
Query: 252 NPN--RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKD 309
P R T+M SAT+ K++Q +A+ ++ + + VG + + + +TQK++ ++E +K+
Sbjct: 371 PPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEESDKRS 429
Query: 310 WLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDIT 369
+L++ N + +VF+ K ++ L + S++GD SQ DRE AL
Sbjct: 430 FLLDLL-NATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 488
Query: 370 SGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRK 429
SG + I VAT VA+RGLD+ ++ HVIN+D PS IEEYVHR+GRTGR G G + + +
Sbjct: 489 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNER 548
Query: 430 DWSHAHEIIPILEEGGHE 447
+ + +++ +L E E
Sbjct: 549 NINITKDLLDLLVEAKQE 566
Score = 621 (223.7 bits), Expect = 2.2e-60, P = 2.2e-60
Identities = 140/345 (40%), Positives = 204/345 (59%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH------- 659
I+ +E +T P+P+Q A PI+ D++ AQTG+GKT AFLLP L +
Sbjct: 191 IMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEA 250
Query: 660 LQTTPISERAG-----PSVLVMAPTRELATQIEREVNKIDYKGLKAVCV-YGGKELEPQL 713
L+ + R G P LV+APTRELA QI E K Y+ CV YGG ++ Q+
Sbjct: 251 LRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQI 310
Query: 714 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT--SIYI 771
+ GCH+L+ATPGRL D + R I L ++VLDEADRMLD+GFEPQI + +
Sbjct: 311 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTM 370
Query: 772 NPN--RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKD 829
P R T+M SAT+ K++Q +A+ ++ + + VG + + + +TQK++ ++E +K+
Sbjct: 371 PPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEESDKRS 429
Query: 830 WLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDIT 889
+L++ N + +VF+ K ++ L + S++GD SQ DRE AL
Sbjct: 430 FLLDLL-NATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 488
Query: 890 SGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
SG + I VAT VA+RGLD+ ++ HVIN+D PS IEEYVHR+GRTG
Sbjct: 489 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTG 533
>UNIPROTKB|F1RX16 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 OMA:KYERGGN
EMBL:CU861899 Ensembl:ENSSSCT00000013398 Uniprot:F1RX16
Length = 661
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 147/378 (38%), Positives = 219/378 (57%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH------- 139
I+ +E +T P+P+Q A PI+ D++ AQTG+GKT AFLLP L +
Sbjct: 191 IMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEA 250
Query: 140 LQTTPISERAG-----PSVLVMAPTRELATQIEREVNKIDYKGLKAVCV-YGGKEIEPQL 193
L+ + R G P LV+APTRELA QI E K Y+ CV YGG +I Q+
Sbjct: 251 LRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQI 310
Query: 194 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT--SIYI 251
+ GCH+L+ATPGRL D + R I L ++VLDEADRMLD+GFEPQI + +
Sbjct: 311 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTM 370
Query: 252 NPN--RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKD 309
P R T+M SAT+ K++Q +A+ ++ + + VG + + + +TQK++ ++E +K+
Sbjct: 371 PPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEESDKRS 429
Query: 310 WLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDIT 369
+L++ N + +VF+ K ++ L + S++GD SQ DRE AL
Sbjct: 430 FLLDLL-NATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 488
Query: 370 SGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRK 429
SG + I VAT VA+RGLD+ ++ HVIN+D PS IEEYVHR+GRTGR G G + + +
Sbjct: 489 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNER 548
Query: 430 DWSHAHEIIPILEEGGHE 447
+ + +++ +L E E
Sbjct: 549 NANITKDLLDLLVEAKQE 566
Score = 621 (223.7 bits), Expect = 2.2e-60, P = 2.2e-60
Identities = 140/345 (40%), Positives = 204/345 (59%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH------- 659
I+ +E +T P+P+Q A PI+ D++ AQTG+GKT AFLLP L +
Sbjct: 191 IMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEA 250
Query: 660 LQTTPISERAG-----PSVLVMAPTRELATQIEREVNKIDYKGLKAVCV-YGGKELEPQL 713
L+ + R G P LV+APTRELA QI E K Y+ CV YGG ++ Q+
Sbjct: 251 LRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQI 310
Query: 714 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT--SIYI 771
+ GCH+L+ATPGRL D + R I L ++VLDEADRMLD+GFEPQI + +
Sbjct: 311 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTM 370
Query: 772 NPN--RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKD 829
P R T+M SAT+ K++Q +A+ ++ + + VG + + + +TQK++ ++E +K+
Sbjct: 371 PPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEESDKRS 429
Query: 830 WLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDIT 889
+L++ N + +VF+ K ++ L + S++GD SQ DRE AL
Sbjct: 430 FLLDLL-NATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 488
Query: 890 SGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
SG + I VAT VA+RGLD+ ++ HVIN+D PS IEEYVHR+GRTG
Sbjct: 489 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTG 533
>MGI|MGI:103064 [details] [associations]
symbol:Ddx3x "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3,
X-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=ISO] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0006200 "ATP
catabolic process" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=ISO]
[GO:0007243 "intracellular protein kinase cascade" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0008143 "poly(A) RNA binding" evidence=ISO] [GO:0008152
"metabolic process" evidence=IEA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=ISO] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=ISO] [GO:0009615 "response to virus" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0010501
"RNA secondary structure unwinding" evidence=ISO] [GO:0016020
"membrane" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0031333 "negative regulation of protein complex assembly"
evidence=ISO] [GO:0031369 "translation initiation factor binding"
evidence=ISO] [GO:0034063 "stress granule assembly" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0042256 "mature ribosome
assembly" evidence=ISO] [GO:0043024 "ribosomal small subunit
binding" evidence=ISO] [GO:0043065 "positive regulation of
apoptotic process" evidence=ISO] [GO:0043066 "negative regulation
of apoptotic process" evidence=ISO] [GO:0043154 "negative
regulation of cysteine-type endopeptidase activity involved in
apoptotic process" evidence=ISO] [GO:0043280 "positive regulation
of cysteine-type endopeptidase activity involved in apoptotic
process" evidence=ISO] [GO:0045087 "innate immune response"
evidence=ISO] [GO:0045727 "positive regulation of translation"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0045948
"positive regulation of translational initiation" evidence=ISO]
[GO:0048027 "mRNA 5'-UTR binding" evidence=ISO] [GO:0071243
"cellular response to arsenic-containing substance" evidence=ISO]
[GO:0071470 "cellular response to osmotic stress" evidence=ISO]
[GO:0097193 "intrinsic apoptotic signaling pathway" evidence=ISO]
[GO:1900087 "positive regulation of G1/S transition of mitotic cell
cycle" evidence=ISO] [GO:2001243 "negative regulation of intrinsic
apoptotic signaling pathway" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:103064
GO:GO:0005524 GO:GO:0005634 GO:GO:0043066 GO:GO:0043154
GO:GO:0030307 GO:GO:0007059 GO:GO:0005741 GO:GO:0017148
GO:GO:0003677 GO:GO:0031333 GO:GO:0016607 GO:GO:0045944
GO:GO:0045087 GO:GO:0007243 GO:GO:0006351 GO:GO:0009615
GO:GO:0043065 GO:GO:0048027 GO:GO:0043280 GO:GO:0071470
GO:GO:0004003 GO:GO:0097193 GO:GO:1900087 GO:GO:0008134
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 KO:K11594
HOVERGEN:HBG015893 CTD:1654 OrthoDB:EOG47D9FV ChiTaRS:DDX3X
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 EMBL:Z38117 EMBL:L25126
IPI:IPI00230035 PIR:I84741 RefSeq:NP_034158.1 UniGene:Mm.289662
ProteinModelPortal:Q62167 SMR:Q62167 IntAct:Q62167
MINT:MINT-1870173 STRING:Q62167 PhosphoSite:Q62167
REPRODUCTION-2DPAGE:Q62167 PaxDb:Q62167 PRIDE:Q62167
Ensembl:ENSMUST00000000804 GeneID:13205 KEGG:mmu:13205
InParanoid:Q62167 NextBio:283364 Bgee:Q62167 CleanEx:MM_ERH
Genevestigator:Q62167 GermOnline:ENSMUSG00000000787 Uniprot:Q62167
Length = 662
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 148/378 (39%), Positives = 219/378 (57%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH------- 139
I+ +E +T P+P+Q A PI+ D++ AQTG+GKT AFLLP L +
Sbjct: 191 IMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGEA 250
Query: 140 LQTTPISERAG-----PSVLVMAPTRELATQIEREVNKIDYKGLKAVCV-YGGKEIEPQL 193
L+ + R G P LV+APTRELA QI E K Y+ CV YGG EI Q+
Sbjct: 251 LRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGAEIGQQI 310
Query: 194 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT--SIYI 251
+ GCH+L+ATPGRL D + R I L ++VLDEADRMLD+GFEPQI + +
Sbjct: 311 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTM 370
Query: 252 NPN--RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKD 309
P R T+M SAT+ K++Q +A+ ++ + + VG + + + +TQK++ ++E +K+
Sbjct: 371 PPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEEIDKRS 429
Query: 310 WLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDIT 369
+L++ N + +VF+ K ++ L + S++GD SQ DRE AL
Sbjct: 430 FLLDLL-NATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 488
Query: 370 SGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRK 429
SG + I VAT VA+RGLD+ ++ HVIN+D PS IEEYVHR+GRTGR G G + + +
Sbjct: 489 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNER 548
Query: 430 DWSHAHEIIPILEEGGHE 447
+ + +++ +L E E
Sbjct: 549 NINITKDLLDLLVEAKQE 566
Score = 621 (223.7 bits), Expect = 2.2e-60, P = 2.2e-60
Identities = 141/345 (40%), Positives = 204/345 (59%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH------- 659
I+ +E +T P+P+Q A PI+ D++ AQTG+GKT AFLLP L +
Sbjct: 191 IMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGEA 250
Query: 660 LQTTPISERAG-----PSVLVMAPTRELATQIEREVNKIDYKGLKAVCV-YGGKELEPQL 713
L+ + R G P LV+APTRELA QI E K Y+ CV YGG E+ Q+
Sbjct: 251 LRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGAEIGQQI 310
Query: 714 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT--SIYI 771
+ GCH+L+ATPGRL D + R I L ++VLDEADRMLD+GFEPQI + +
Sbjct: 311 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTM 370
Query: 772 NPN--RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKD 829
P R T+M SAT+ K++Q +A+ ++ + + VG + + + +TQK++ ++E +K+
Sbjct: 371 PPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEEIDKRS 429
Query: 830 WLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDIT 889
+L++ N + +VF+ K ++ L + S++GD SQ DRE AL
Sbjct: 430 FLLDLL-NATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 488
Query: 890 SGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
SG + I VAT VA+RGLD+ ++ HVIN+D PS IEEYVHR+GRTG
Sbjct: 489 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTG 533
>RGD|1564771 [details] [associations]
symbol:Ddx3x "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
X-linked" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1564771 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:KYERGGN OrthoDB:EOG47D9FV IPI:IPI00362534 PhosphoSite:D4ADE8
PRIDE:D4ADE8 Ensembl:ENSRNOT00000039551 UCSC:RGD:1564771
Uniprot:D4ADE8
Length = 662
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 148/378 (39%), Positives = 219/378 (57%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH------- 139
I+ +E +T P+P+Q A PI+ D++ AQTG+GKT AFLLP L +
Sbjct: 191 IMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGEA 250
Query: 140 LQTTPISERAG-----PSVLVMAPTRELATQIEREVNKIDYKGLKAVCV-YGGKEIEPQL 193
L+ + R G P LV+APTRELA QI E K Y+ CV YGG EI Q+
Sbjct: 251 LRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGAEIGQQI 310
Query: 194 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT--SIYI 251
+ GCH+L+ATPGRL D + R I L ++VLDEADRMLD+GFEPQI + +
Sbjct: 311 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTM 370
Query: 252 NPN--RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKD 309
P R T+M SAT+ K++Q +A+ ++ + + VG + + + +TQK++ ++E +K+
Sbjct: 371 PPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEEIDKRS 429
Query: 310 WLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDIT 369
+L++ N + +VF+ K ++ L + S++GD SQ DRE AL
Sbjct: 430 FLLDLL-NATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 488
Query: 370 SGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRK 429
SG + I VAT VA+RGLD+ ++ HVIN+D PS IEEYVHR+GRTGR G G + + +
Sbjct: 489 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNER 548
Query: 430 DWSHAHEIIPILEEGGHE 447
+ + +++ +L E E
Sbjct: 549 NINITKDLLDLLVEAKQE 566
Score = 621 (223.7 bits), Expect = 2.2e-60, P = 2.2e-60
Identities = 141/345 (40%), Positives = 204/345 (59%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH------- 659
I+ +E +T P+P+Q A PI+ D++ AQTG+GKT AFLLP L +
Sbjct: 191 IMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGEA 250
Query: 660 LQTTPISERAG-----PSVLVMAPTRELATQIEREVNKIDYKGLKAVCV-YGGKELEPQL 713
L+ + R G P LV+APTRELA QI E K Y+ CV YGG E+ Q+
Sbjct: 251 LRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGAEIGQQI 310
Query: 714 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT--SIYI 771
+ GCH+L+ATPGRL D + R I L ++VLDEADRMLD+GFEPQI + +
Sbjct: 311 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTM 370
Query: 772 NPN--RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKD 829
P R T+M SAT+ K++Q +A+ ++ + + VG + + + +TQK++ ++E +K+
Sbjct: 371 PPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEEIDKRS 429
Query: 830 WLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDIT 889
+L++ N + +VF+ K ++ L + S++GD SQ DRE AL
Sbjct: 430 FLLDLL-NATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 488
Query: 890 SGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
SG + I VAT VA+RGLD+ ++ HVIN+D PS IEEYVHR+GRTG
Sbjct: 489 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTG 533
>UNIPROTKB|B4DXX7 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893
UniGene:Hs.99120 HGNC:HGNC:2699 EMBL:AC004474 EMBL:AK302172
IPI:IPI00646152 SMR:B4DXX7 STRING:B4DXX7 Ensembl:ENST00000537441
UCSC:uc011nar.1 Uniprot:B4DXX7
Length = 657
Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
Identities = 148/378 (39%), Positives = 220/378 (58%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPAL--IHTH----- 139
I+ +E +T P+P+Q A PI+ D++ AQTG+GKT AFLLP L I+T
Sbjct: 186 IMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEA 245
Query: 140 LQTTPISERAG-----PSVLVMAPTRELATQIEREVNKIDYKGLKAVCV-YGGKEIEPQL 193
L+ + R G P LV+APTRELA QI E K Y+ CV YGG +I Q+
Sbjct: 246 LKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQI 305
Query: 194 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT--SIYI 251
+ GCH+L+ATPGRL D + R I L ++VLDEADRMLD+GFEPQI + +
Sbjct: 306 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTM 365
Query: 252 NPN--RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKD 309
P R T+M SAT+ K++Q +A+ ++ + + VG + + + +TQK++ +++ +K+
Sbjct: 366 PPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEDLDKRS 424
Query: 310 WLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDIT 369
+L++ + +VF+ K ++ L + S++GD SQ DRE AL
Sbjct: 425 FLLDILGATGSD-SLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 483
Query: 370 SGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRK 429
SG + I VAT VA+RGLD+ ++ HVIN+D PS IEEYVHR+GRTGR G G + + K
Sbjct: 484 SGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEK 543
Query: 430 DWSHAHEIIPILEEGGHE 447
+ + +++ +L E E
Sbjct: 544 NMNITKDLLDLLVEAKQE 561
Score = 615 (221.5 bits), Expect = 1.1e-59, P = 1.1e-59
Identities = 140/345 (40%), Positives = 205/345 (59%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPAL--IHTH----- 659
I+ +E +T P+P+Q A PI+ D++ AQTG+GKT AFLLP L I+T
Sbjct: 186 IMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEA 245
Query: 660 LQTTPISERAG-----PSVLVMAPTRELATQIEREVNKIDYKGLKAVCV-YGGKELEPQL 713
L+ + R G P LV+APTRELA QI E K Y+ CV YGG ++ Q+
Sbjct: 246 LKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQI 305
Query: 714 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT--SIYI 771
+ GCH+L+ATPGRL D + R I L ++VLDEADRMLD+GFEPQI + +
Sbjct: 306 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTM 365
Query: 772 NPN--RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKD 829
P R T+M SAT+ K++Q +A+ ++ + + VG + + + +TQK++ +++ +K+
Sbjct: 366 PPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEDLDKRS 424
Query: 830 WLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDIT 889
+L++ + +VF+ K ++ L + S++GD SQ DRE AL
Sbjct: 425 FLLDILGATGSD-SLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 483
Query: 890 SGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
SG + I VAT VA+RGLD+ ++ HVIN+D PS IEEYVHR+GRTG
Sbjct: 484 SGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTG 528
>UNIPROTKB|O15523 [details] [associations]
symbol:DDX3Y "ATP-dependent RNA helicase DDX3Y"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 Orphanet:1646
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 HPA:HPA001648
HPA:HPA005631 OrthoDB:EOG47D9FV EMBL:AF000985 EMBL:AF000984
EMBL:BC034942 IPI:IPI00293616 RefSeq:NP_001116137.1
RefSeq:NP_004651.2 UniGene:Hs.99120 ProteinModelPortal:O15523
SMR:O15523 IntAct:O15523 MINT:MINT-2999090 STRING:O15523
PhosphoSite:O15523 PaxDb:O15523 PRIDE:O15523
Ensembl:ENST00000336079 Ensembl:ENST00000360160 GeneID:8653
KEGG:hsa:8653 UCSC:uc004fsu.1 CTD:8653 GeneCards:GC0YP015016
HGNC:HGNC:2699 MIM:400010 neXtProt:NX_O15523 PharmGKB:PA27168
InParanoid:O15523 OMA:GNWANAN PhylomeDB:O15523 GenomeRNAi:8653
NextBio:32449 ArrayExpress:O15523 Bgee:O15523 CleanEx:HS_DDX3Y
Genevestigator:O15523 GermOnline:ENSG00000067048 Uniprot:O15523
Length = 660
Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
Identities = 148/378 (39%), Positives = 220/378 (58%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPAL--IHTH----- 139
I+ +E +T P+P+Q A PI+ D++ AQTG+GKT AFLLP L I+T
Sbjct: 189 IMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEA 248
Query: 140 LQTTPISERAG-----PSVLVMAPTRELATQIEREVNKIDYKGLKAVCV-YGGKEIEPQL 193
L+ + R G P LV+APTRELA QI E K Y+ CV YGG +I Q+
Sbjct: 249 LKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQI 308
Query: 194 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT--SIYI 251
+ GCH+L+ATPGRL D + R I L ++VLDEADRMLD+GFEPQI + +
Sbjct: 309 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTM 368
Query: 252 NPN--RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKD 309
P R T+M SAT+ K++Q +A+ ++ + + VG + + + +TQK++ +++ +K+
Sbjct: 369 PPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEDLDKRS 427
Query: 310 WLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDIT 369
+L++ + +VF+ K ++ L + S++GD SQ DRE AL
Sbjct: 428 FLLDILGATGSD-SLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 486
Query: 370 SGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRK 429
SG + I VAT VA+RGLD+ ++ HVIN+D PS IEEYVHR+GRTGR G G + + K
Sbjct: 487 SGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEK 546
Query: 430 DWSHAHEIIPILEEGGHE 447
+ + +++ +L E E
Sbjct: 547 NMNITKDLLDLLVEAKQE 564
Score = 615 (221.5 bits), Expect = 1.1e-59, P = 1.1e-59
Identities = 140/345 (40%), Positives = 205/345 (59%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPAL--IHTH----- 659
I+ +E +T P+P+Q A PI+ D++ AQTG+GKT AFLLP L I+T
Sbjct: 189 IMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEA 248
Query: 660 LQTTPISERAG-----PSVLVMAPTRELATQIEREVNKIDYKGLKAVCV-YGGKELEPQL 713
L+ + R G P LV+APTRELA QI E K Y+ CV YGG ++ Q+
Sbjct: 249 LKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQI 308
Query: 714 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT--SIYI 771
+ GCH+L+ATPGRL D + R I L ++VLDEADRMLD+GFEPQI + +
Sbjct: 309 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTM 368
Query: 772 NPN--RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKD 829
P R T+M SAT+ K++Q +A+ ++ + + VG + + + +TQK++ +++ +K+
Sbjct: 369 PPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEDLDKRS 427
Query: 830 WLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDIT 889
+L++ + +VF+ K ++ L + S++GD SQ DRE AL
Sbjct: 428 FLLDILGATGSD-SLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 486
Query: 890 SGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
SG + I VAT VA+RGLD+ ++ HVIN+D PS IEEYVHR+GRTG
Sbjct: 487 SGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTG 531
>UNIPROTKB|Q4R5S7 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9541 "Macaca fascicularis" [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0071546 "pi-body" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AB169466
ProteinModelPortal:Q4R5S7 SMR:Q4R5S7 Uniprot:Q4R5S7
Length = 725
Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
Identities = 157/463 (33%), Positives = 258/463 (55%)
Query: 13 RDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRK--KNNDISVSVVTSDGQIDENPDFQI 70
++ W E + ++ + P+V + P E + +S D + E
Sbjct: 225 KNSWKSEAEGGESSDTQGPKVTYIPPPPPEDEDSIFAHYQTGISFDKYDTILVEVSGHDA 284
Query: 71 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 130
P + +F++A + + +T +P+Q + PI+++G D++ AQTG+GKT AF
Sbjct: 285 PPAILTFEEA-NLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAF 343
Query: 131 LLPALIHT-H--LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGG 186
LLP L H H + + E P +++APTREL QI E K + ++AV +YGG
Sbjct: 344 LLPILAHMMHDGITASCFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGG 403
Query: 187 KEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINK 246
++ + +I +GC+IL ATPGRL D + + I LK + ++VLDEADRMLD+GF P++ K
Sbjct: 404 TQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKK 463
Query: 247 T-SIYINPN---RQTVMTSATWNKDVQRVAKKYMV-NPVKVNVGSLDLAATHTVTQKIII 301
S P+ RQT+M SAT+ +++QR+A +++ N + V VG + A V Q ++
Sbjct: 464 LISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVG-GACRDVQQTVLQ 522
Query: 302 LDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSC-SLYGDLSQED 360
+ + K++ L+E N+ +ER MVF+ K +++ L CQ + S S++GD Q +
Sbjct: 523 VGQFSKREKLVEILRNIGDER--TMVFVETKKKADFIATFL-CQEKISTTSIHGDREQRE 579
Query: 361 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSG 420
RE AL D G + VAT VA+RGLD+ ++ HVIN+D PS I+EYVHR+GRTGR G +G
Sbjct: 580 REQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTG 639
Query: 421 ESITLMTRKDWSH-AHEIIPILEEGGHESYMIWRRDSRIALHV 462
+I+ + +H A ++ +L + + W + + ++
Sbjct: 640 RAISFFDLESDNHLAQPLVKVLTDA-QQDVPAWLEEIAFSTYI 681
Score = 615 (221.5 bits), Expect = 1.1e-59, P = 1.1e-59
Identities = 150/414 (36%), Positives = 236/414 (57%)
Query: 533 RDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRK--KNNDISVSVVTSDGQIDENPDFQI 590
++ W E + ++ + P+V + P E + +S D + E
Sbjct: 225 KNSWKSEAEGGESSDTQGPKVTYIPPPPPEDEDSIFAHYQTGISFDKYDTILVEVSGHDA 284
Query: 591 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 650
P + +F++A + + +T +P+Q + PI+++G D++ AQTG+GKT AF
Sbjct: 285 PPAILTFEEA-NLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAF 343
Query: 651 LLPALIHT-H--LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGG 706
LLP L H H + + E P +++APTREL QI E K + ++AV +YGG
Sbjct: 344 LLPILAHMMHDGITASCFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGG 403
Query: 707 KELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINK 766
+L + +I +GC+IL ATPGRL D + + I LK + ++VLDEADRMLD+GF P++ K
Sbjct: 404 TQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKK 463
Query: 767 T-SIYINPN---RQTVMTSATWNKDVQRVAKKYMV-NPVKVNVGSLDLAATHTVTQKIII 821
S P+ RQT+M SAT+ +++QR+A +++ N + V VG + A V Q ++
Sbjct: 464 LISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVG-GACRDVQQTVLQ 522
Query: 822 LDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSC-SLYGDLSQED 880
+ + K++ L+E N+ +ER MVF+ K +++ L CQ + S S++GD Q +
Sbjct: 523 VGQFSKREKLVEILRNIGDER--TMVFVETKKKADFIATFL-CQEKISTTSIHGDREQRE 579
Query: 881 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
RE AL D G + VAT VA+RGLD+ ++ HVIN+D PS I+EYVHR+GRTG
Sbjct: 580 REQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTG 633
>UNIPROTKB|F1NIX1 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AADN02011031
IPI:IPI00822944 Ensembl:ENSGALT00000026172 ArrayExpress:F1NIX1
Uniprot:F1NIX1
Length = 638
Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
Identities = 148/378 (39%), Positives = 219/378 (57%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH------- 139
I+ +E +T P+P+Q A PI+ D++ AQTG+GKT AFLLP L +
Sbjct: 169 IMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGDA 228
Query: 140 LQTTPISERAG-----PSVLVMAPTRELATQIEREVNKIDYKGLKAVCV-YGGKEIEPQL 193
L+ + R G P LV+APTRELA QI E K Y+ CV YGG +I Q+
Sbjct: 229 LRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQI 288
Query: 194 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT--SIYI 251
+ GCH+L+ATPGRL D + R I L ++VLDEADRMLD+GFEPQI + +
Sbjct: 289 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTM 348
Query: 252 NPN--RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKD 309
P R T+M SAT+ K++Q +A+ ++ + + VG + + + +TQK++ ++E +K+
Sbjct: 349 PPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEELDKRS 407
Query: 310 WLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDIT 369
+L++ N + +VF+ K A+ L + S++GD SQ DRE AL
Sbjct: 408 FLLDLL-NATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFR 466
Query: 370 SGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRK 429
SG + I VAT VA+RGLD+ ++ HVIN+D PS IEEYVHR+GRTGR G G + + +
Sbjct: 467 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNER 526
Query: 430 DWSHAHEIIPILEEGGHE 447
+ + +++ +L E E
Sbjct: 527 NINITKDLLDLLVEAKQE 544
Score = 618 (222.6 bits), Expect = 4.8e-60, P = 4.8e-60
Identities = 141/345 (40%), Positives = 204/345 (59%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH------- 659
I+ +E +T P+P+Q A PI+ D++ AQTG+GKT AFLLP L +
Sbjct: 169 IMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGDA 228
Query: 660 LQTTPISERAG-----PSVLVMAPTRELATQIEREVNKIDYKGLKAVCV-YGGKELEPQL 713
L+ + R G P LV+APTRELA QI E K Y+ CV YGG ++ Q+
Sbjct: 229 LRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQI 288
Query: 714 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT--SIYI 771
+ GCH+L+ATPGRL D + R I L ++VLDEADRMLD+GFEPQI + +
Sbjct: 289 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTM 348
Query: 772 NPN--RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKD 829
P R T+M SAT+ K++Q +A+ ++ + + VG + + + +TQK++ ++E +K+
Sbjct: 349 PPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEELDKRS 407
Query: 830 WLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDIT 889
+L++ N + +VF+ K A+ L + S++GD SQ DRE AL
Sbjct: 408 FLLDLL-NATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFR 466
Query: 890 SGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
SG + I VAT VA+RGLD+ ++ HVIN+D PS IEEYVHR+GRTG
Sbjct: 467 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTG 511
>UNIPROTKB|D6RDK4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 CTD:54514 KO:K13982 RefSeq:NP_001160005.1
UniGene:Hs.223581 GeneID:54514 KEGG:hsa:54514 HGNC:HGNC:18700
GenomeRNAi:54514 NextBio:56900 EMBL:AC016632 IPI:IPI00953956
ProteinModelPortal:D6RDK4 SMR:D6RDK4 PRIDE:D6RDK4
Ensembl:ENST00000514278 UCSC:uc010ivz.3 ArrayExpress:D6RDK4
Bgee:D6RDK4 Uniprot:D6RDK4
Length = 704
Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
Identities = 148/403 (36%), Positives = 238/403 (59%)
Query: 71 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 130
P + +F++A + + +T +P+Q + PI+++G D++ AQTG+GKT AF
Sbjct: 264 PPAILTFEEA-NLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAF 322
Query: 131 LLPALIHT-H--LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGG 186
LLP L H H + + E P +++APTREL QI E K + ++AV +YGG
Sbjct: 323 LLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGG 382
Query: 187 KEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINK 246
++ + +I +GC+IL ATPGRL D + + I LK + ++VLDEADRMLD+GF P++ K
Sbjct: 383 TQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKK 442
Query: 247 T-SIYINPN---RQTVMTSATWNKDVQRVAKKYMV-NPVKVNVGSLDLAATHTVTQKIII 301
S P+ RQT+M SAT+ +++QR+A +++ N + V VG + A V Q ++
Sbjct: 443 LISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVG-GACRDVQQTVLQ 501
Query: 302 LDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSC-SLYGDLSQED 360
+ + K++ L+E N+ +ER MVF+ K +++ L CQ + S S++GD Q +
Sbjct: 502 VGQFSKREKLVEILRNIGDER--TMVFVETKKKADFIATFL-CQEKISTTSIHGDREQRE 558
Query: 361 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSG 420
RE AL D G + VAT VA+RGLD+ ++ HVIN+D PS I+EYVHR+GRTGR G +G
Sbjct: 559 REQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTG 618
Query: 421 ESITLMTRKDWSH-AHEIIPILEEGGHESYMIWRRDSRIALHV 462
+I+ + +H A ++ +L + + W + + ++
Sbjct: 619 RAISFFDLESDNHLAQPLVKVLTDA-QQDVPAWLEEIAFSTYI 660
Score = 614 (221.2 bits), Expect = 1.4e-59, P = 1.4e-59
Identities = 141/354 (39%), Positives = 216/354 (61%)
Query: 591 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 650
P + +F++A + + +T +P+Q + PI+++G D++ AQTG+GKT AF
Sbjct: 264 PPAILTFEEA-NLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAF 322
Query: 651 LLPALIHT-H--LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGG 706
LLP L H H + + E P +++APTREL QI E K + ++AV +YGG
Sbjct: 323 LLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGG 382
Query: 707 KELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINK 766
+L + +I +GC+IL ATPGRL D + + I LK + ++VLDEADRMLD+GF P++ K
Sbjct: 383 TQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKK 442
Query: 767 T-SIYINPN---RQTVMTSATWNKDVQRVAKKYMV-NPVKVNVGSLDLAATHTVTQKIII 821
S P+ RQT+M SAT+ +++QR+A +++ N + V VG + A V Q ++
Sbjct: 443 LISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVG-GACRDVQQTVLQ 501
Query: 822 LDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSC-SLYGDLSQED 880
+ + K++ L+E N+ +ER MVF+ K +++ L CQ + S S++GD Q +
Sbjct: 502 VGQFSKREKLVEILRNIGDER--TMVFVETKKKADFIATFL-CQEKISTTSIHGDREQRE 558
Query: 881 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
RE AL D G + VAT VA+RGLD+ ++ HVIN+D PS I+EYVHR+GRTG
Sbjct: 559 REQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTG 612
>UNIPROTKB|Q9NQI0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007141 "male meiosis I" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0032880 "regulation of protein
localization" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0071546 "pi-body" evidence=ISS] [GO:0071547 "piP-body"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 EMBL:CH471123 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 CTD:54514 KO:K13982
OrthoDB:EOG4W6NVF GO:GO:0071547 EMBL:AY004154 EMBL:AF262962
EMBL:AK292417 EMBL:BC047455 EMBL:BC088362 EMBL:AL137462
IPI:IPI00071483 IPI:IPI00456933 PIR:T46407 RefSeq:NP_001136021.1
RefSeq:NP_001160005.1 RefSeq:NP_077726.1 UniGene:Hs.223581
ProteinModelPortal:Q9NQI0 SMR:Q9NQI0 IntAct:Q9NQI0 STRING:Q9NQI0
PhosphoSite:Q9NQI0 DMDM:20138033 REPRODUCTION-2DPAGE:IPI00456933
PaxDb:Q9NQI0 PRIDE:Q9NQI0 Ensembl:ENST00000353507
Ensembl:ENST00000354991 Ensembl:ENST00000505374 GeneID:54514
KEGG:hsa:54514 UCSC:uc003jqg.4 UCSC:uc003jqh.4
GeneCards:GC05P055069 HGNC:HGNC:18700 HPA:CAB026170 HPA:HPA037763
HPA:HPA037764 MIM:605281 neXtProt:NX_Q9NQI0 PharmGKB:PA38646
InParanoid:Q9NQI0 OMA:RDAGESN PhylomeDB:Q9NQI0 GenomeRNAi:54514
NextBio:56900 ArrayExpress:Q9NQI0 Bgee:Q9NQI0 CleanEx:HS_DDX4
Genevestigator:Q9NQI0 GermOnline:ENSG00000152670 GO:GO:0000237
Uniprot:Q9NQI0
Length = 724
Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
Identities = 148/403 (36%), Positives = 238/403 (59%)
Query: 71 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 130
P + +F++A + + +T +P+Q + PI+++G D++ AQTG+GKT AF
Sbjct: 284 PPAILTFEEA-NLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAF 342
Query: 131 LLPALIHT-H--LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGG 186
LLP L H H + + E P +++APTREL QI E K + ++AV +YGG
Sbjct: 343 LLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGG 402
Query: 187 KEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINK 246
++ + +I +GC+IL ATPGRL D + + I LK + ++VLDEADRMLD+GF P++ K
Sbjct: 403 TQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKK 462
Query: 247 T-SIYINPN---RQTVMTSATWNKDVQRVAKKYMV-NPVKVNVGSLDLAATHTVTQKIII 301
S P+ RQT+M SAT+ +++QR+A +++ N + V VG + A V Q ++
Sbjct: 463 LISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVG-GACRDVQQTVLQ 521
Query: 302 LDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSC-SLYGDLSQED 360
+ + K++ L+E N+ +ER MVF+ K +++ L CQ + S S++GD Q +
Sbjct: 522 VGQFSKREKLVEILRNIGDER--TMVFVETKKKADFIATFL-CQEKISTTSIHGDREQRE 578
Query: 361 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSG 420
RE AL D G + VAT VA+RGLD+ ++ HVIN+D PS I+EYVHR+GRTGR G +G
Sbjct: 579 REQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTG 638
Query: 421 ESITLMTRKDWSH-AHEIIPILEEGGHESYMIWRRDSRIALHV 462
+I+ + +H A ++ +L + + W + + ++
Sbjct: 639 RAISFFDLESDNHLAQPLVKVLTDA-QQDVPAWLEEIAFSTYI 680
Score = 614 (221.2 bits), Expect = 1.4e-59, P = 1.4e-59
Identities = 141/354 (39%), Positives = 216/354 (61%)
Query: 591 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 650
P + +F++A + + +T +P+Q + PI+++G D++ AQTG+GKT AF
Sbjct: 284 PPAILTFEEA-NLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAF 342
Query: 651 LLPALIHT-H--LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGG 706
LLP L H H + + E P +++APTREL QI E K + ++AV +YGG
Sbjct: 343 LLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGG 402
Query: 707 KELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINK 766
+L + +I +GC+IL ATPGRL D + + I LK + ++VLDEADRMLD+GF P++ K
Sbjct: 403 TQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKK 462
Query: 767 T-SIYINPN---RQTVMTSATWNKDVQRVAKKYMV-NPVKVNVGSLDLAATHTVTQKIII 821
S P+ RQT+M SAT+ +++QR+A +++ N + V VG + A V Q ++
Sbjct: 463 LISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVG-GACRDVQQTVLQ 521
Query: 822 LDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSC-SLYGDLSQED 880
+ + K++ L+E N+ +ER MVF+ K +++ L CQ + S S++GD Q +
Sbjct: 522 VGQFSKREKLVEILRNIGDER--TMVFVETKKKADFIATFL-CQEKISTTSIHGDREQRE 578
Query: 881 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
RE AL D G + VAT VA+RGLD+ ++ HVIN+D PS I+EYVHR+GRTG
Sbjct: 579 REQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTG 632
>TAIR|locus:2074899 [details] [associations]
symbol:AT3G09620 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003723 EMBL:AC016661 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 IPI:IPI00534330
RefSeq:NP_187573.1 UniGene:At.53239 ProteinModelPortal:Q9SF41
SMR:Q9SF41 PaxDb:Q9SF41 PRIDE:Q9SF41 EnsemblPlants:AT3G09620.1
GeneID:820119 KEGG:ath:AT3G09620 KEGG:dosa:Os08t0154200-01
GeneFarm:1024 TAIR:At3g09620 InParanoid:Q9SF41 OMA:RGRYKVL
PhylomeDB:Q9SF41 ArrayExpress:Q9SF41 Genevestigator:Q9SF41
GermOnline:AT3G09620 Uniprot:Q9SF41
Length = 989
Score = 522 (188.8 bits), Expect = 2.5e-63, Sum P(2) = 2.5e-63
Identities = 128/337 (37%), Positives = 193/337 (57%)
Query: 12 ERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIP 71
+ K EP KN Y E +++ MT + V A+RK ++ + V D +P
Sbjct: 347 DHSKIEYEP-FRKNFYIEVKDISRMTQDAVNAYRK---ELELKVHGKD----------VP 392
Query: 72 NPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFL 131
P+ + Q +IL L+ L++ P PIQAQA PI+MSG D IG+A+TG+GKT F+
Sbjct: 393 RPIQFWHQTGLT-SKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFV 451
Query: 132 LPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCV--YGGKEI 189
LP L H Q P+ GP LVMAPTREL QI ++ K K L +CV YGG +
Sbjct: 452 LPMLRHIKDQP-PVEAGDGPIGLVMAPTRELVQQIYSDIRKFS-KALGIICVPVYGGSGV 509
Query: 190 EPQLEKIREGCHILIATPGRLNDFVSRAS---IDLKAVSFVVLDEADRMLDLGFEPQINK 246
Q+ +++ G I++ TPGR+ D + +S +L+ V+++V+DEADRM D+GFEPQI +
Sbjct: 510 AQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITR 569
Query: 247 TSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDE 306
I P+RQTV+ SAT+ + V+ +A+K + PV++ VG + +TQ + I E E
Sbjct: 570 IVQNIRPDRQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVV-NKDITQLVEIRPESE 628
Query: 307 KKDWLMEFFDNMDEERDKVMVFM-GRKASVSAMSSDL 342
+ L+E E+ KV+VF+ ++ S+S SD+
Sbjct: 629 RFSRLLELLGEW-YEKGKVLVFVRSQEKSISDFKSDV 664
Score = 522 (188.8 bits), Expect = 3.4e-61, Sum P(3) = 3.4e-61
Identities = 132/349 (37%), Positives = 198/349 (56%)
Query: 520 TMEELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSD 579
T E ++L D K EP KN Y E +++ MT + V A+RK ++ + V D
Sbjct: 338 TKAEKLSLVDHS---KIEYEP-FRKNFYIEVKDISRMTQDAVNAYRK---ELELKVHGKD 390
Query: 580 GQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGI 639
+P P+ + Q +IL L+ L++ P PIQAQA PI+MSG D IG+
Sbjct: 391 ----------VPRPIQFWHQTGLT-SKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGV 439
Query: 640 AQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLK 699
A+TG+GKT F+LP L H Q P+ GP LVMAPTREL QI ++ K K L
Sbjct: 440 AKTGSGKTLGFVLPMLRHIKDQP-PVEAGDGPIGLVMAPTRELVQQIYSDIRKFS-KALG 497
Query: 700 AVCV--YGGKELEPQLEKIREGCHILIATPGRLNDFVSRAS---IDLKAVSFVVLDEADR 754
+CV YGG + Q+ +++ G I++ TPGR+ D + +S +L+ V+++V+DEADR
Sbjct: 498 IICVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADR 557
Query: 755 MLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHT 814
M D+GFEPQI + I P+RQTV+ SAT+ + V+ +A+K + PV++ VG +
Sbjct: 558 MFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVV-NKD 616
Query: 815 VTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFM-GRKASVSAMSSDL 862
+TQ + I E E+ L+E E+ KV+VF+ ++ S+S SD+
Sbjct: 617 ITQLVEIRPESERFSRLLELLGEW-YEKGKVLVFVRSQEKSISDFKSDV 664
Score = 203 (76.5 bits), Expect = 2.5e-63, Sum P(2) = 2.5e-63
Identities = 37/82 (45%), Positives = 57/82 (69%)
Query: 361 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSG 420
+E ++ D S + +AT VA+RGLDV +L V+N+D P+H E+YVHRVGRTGRAG+ G
Sbjct: 653 QEKSISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKG 712
Query: 421 ESITLMTRKDWSHAHEIIPILE 442
++T ++ D +A +++ LE
Sbjct: 713 CAVTFISEDDAKYAPDLVKALE 734
Score = 153 (58.9 bits), Expect = 3.4e-61, Sum P(3) = 3.4e-61
Identities = 28/54 (51%), Positives = 39/54 (72%)
Query: 881 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
+E ++ D S + +AT VA+RGLDV +L V+N+D P+H E+YVHRVGRTG
Sbjct: 653 QEKSISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTG 706
Score = 72 (30.4 bits), Expect = 3.4e-61, Sum P(3) = 3.4e-61
Identities = 25/105 (23%), Positives = 46/105 (43%)
Query: 9 DRKERDKWAREPKIIKNVYKED-PEVANMTP---EQVEAFRKKNNDISVSVVTSDGQIDE 64
+R+ER+K K K +ED E ++ ++ R ++ D V T D Q+++
Sbjct: 93 ERREREKEKGRKKQKKERSREDCNEESDDVKCGLKRKRTERSRHGDDDVEKKTRDEQVED 152
Query: 65 NPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPI 109
Q+ V ++ Q + E+ RQ E + P +AW +
Sbjct: 153 EQK-QLAEEVEKRRRRVQEWQELKRQNEEAQIESKGPETGKAWTL 196
Score = 72 (30.4 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 25/105 (23%), Positives = 46/105 (43%)
Query: 529 DRKERDKWAREPKIIKNVYKED-PEVANMTP---EQVEAFRKKNNDISVSVVTSDGQIDE 584
+R+ER+K K K +ED E ++ ++ R ++ D V T D Q+++
Sbjct: 93 ERREREKEKGRKKQKKERSREDCNEESDDVKCGLKRKRTERSRHGDDDVEKKTRDEQVED 152
Query: 585 NPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPI 629
Q+ V ++ Q + E+ RQ E + P +AW +
Sbjct: 153 EQK-QLAEEVEKRRRRVQEWQELKRQNEEAQIESKGPETGKAWTL 196
>UNIPROTKB|I3LDV0 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:TILWVYE EMBL:FP565155
Ensembl:ENSSSCT00000028884 Uniprot:I3LDV0
Length = 667
Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
Identities = 149/367 (40%), Positives = 214/367 (58%)
Query: 71 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 130
P + SF + I+ +E +T P+P+Q A PI+ D++ AQTG+GKT AF
Sbjct: 177 PRHIESFSDV-EMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAF 235
Query: 131 LLPAL--IHTH-----LQTTPISERAG-----PSVLVMAPTRELATQIEREVNKIDYKGL 178
LLP L I+T L+ + R G P LV+APTRELA QI E K Y+
Sbjct: 236 LLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSR 295
Query: 179 KAVCV-YGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLD 237
CV YGG +I Q+ + GCH+L+ATPGRL D + R I L ++VLDEADRMLD
Sbjct: 296 VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 355
Query: 238 LGFEPQINKT--SIYINPN--RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATH 293
+GFEPQI + + P R T+M SAT+ K++Q +A+ ++ + + VG + + +
Sbjct: 356 MGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSE 414
Query: 294 TVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLY 353
+TQK++ ++E +K+ +L++ N + +VF+ K ++ L + S++
Sbjct: 415 NITQKVVWVEESDKRSFLLDLL-NATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIH 473
Query: 354 GDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRT 413
GD SQ DRE AL SG + I VAT VA+RGLD+ ++ HVIN+D PS IEEYVHR+GRT
Sbjct: 474 GDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRT 533
Query: 414 GRAGKSG 420
GR G G
Sbjct: 534 GRVGNLG 540
Score = 627 (225.8 bits), Expect = 4.4e-61, P = 4.4e-61
Identities = 145/361 (40%), Positives = 211/361 (58%)
Query: 591 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 650
P + SF + I+ +E +T P+P+Q A PI+ D++ AQTG+GKT AF
Sbjct: 177 PRHIESFSDV-EMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAF 235
Query: 651 LLPAL--IHTH-----LQTTPISERAG-----PSVLVMAPTRELATQIEREVNKIDYKGL 698
LLP L I+T L+ + R G P LV+APTRELA QI E K Y+
Sbjct: 236 LLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSR 295
Query: 699 KAVCV-YGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLD 757
CV YGG ++ Q+ + GCH+L+ATPGRL D + R I L ++VLDEADRMLD
Sbjct: 296 VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 355
Query: 758 LGFEPQINKT--SIYINPN--RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATH 813
+GFEPQI + + P R T+M SAT+ K++Q +A+ ++ + + VG + + +
Sbjct: 356 MGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSE 414
Query: 814 TVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLY 873
+TQK++ ++E +K+ +L++ N + +VF+ K ++ L + S++
Sbjct: 415 NITQKVVWVEESDKRSFLLDLL-NATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIH 473
Query: 874 GDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRT 933
GD SQ DRE AL SG + I VAT VA+RGLD+ ++ HVIN+D PS IEEYVHR+GRT
Sbjct: 474 GDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRT 533
Query: 934 G 934
G
Sbjct: 534 G 534
Score = 551 (199.0 bits), Expect = 1.4e-52, P = 1.4e-52
Identities = 121/305 (39%), Positives = 181/305 (59%)
Query: 151 PSVLVMAPTRELATQIEREVNKIDYKGLKAVCV-YGGKEIEPQLEKIREGCHILIATPGR 209
P LV+APTRELA QI E K Y+ CV YGG +I Q+ + GCH+L+ATPGR
Sbjct: 268 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 327
Query: 210 LNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT--SIYINPN--RQTVMTSATWN 265
L D + R I L ++VLDEADRMLD+GFEPQI + + P R T+M SAT+
Sbjct: 328 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFP 387
Query: 266 KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKV 325
K++Q +A+ ++ + + VG + + + +TQK++ ++E +K+ +L++ N +
Sbjct: 388 KEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEESDKRSFLLDLL-NATGKDSLT 445
Query: 326 MVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRG 385
+VF+ K ++ L + S++GD SQ DRE AL SG + I VAT VA+RG
Sbjct: 446 LVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARG 505
Query: 386 LDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGE---SITLMTRKDWSHAHEIIPILE 442
LD+ ++ HVIN+D PS IEEYVHR+GRTGR G G + + ++ + +++ +L
Sbjct: 506 LDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLIGLATSFFNERNINITKDLLDLLV 565
Query: 443 EGGHE 447
E E
Sbjct: 566 EAKQE 570
>TAIR|locus:2119176 [details] [associations]
symbol:AT4G33370 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0046872 GO:GO:0008270 EMBL:AL035678 EMBL:AL161583
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13116 HOGENOM:HOG000268792 ProtClustDB:CLSN2685494
IPI:IPI00545227 PIR:T05988 RefSeq:NP_195063.1 UniGene:At.65448
ProteinModelPortal:Q9SZB4 SMR:Q9SZB4 PaxDb:Q9SZB4 PRIDE:Q9SZB4
EnsemblPlants:AT4G33370.1 GeneID:829474 KEGG:ath:AT4G33370
GeneFarm:1022 TAIR:At4g33370 InParanoid:Q9SZB4 OMA:MEETETI
PhylomeDB:Q9SZB4 Genevestigator:Q9SZB4 GermOnline:AT4G33370
Uniprot:Q9SZB4
Length = 542
Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
Identities = 150/394 (38%), Positives = 227/394 (57%)
Query: 46 KKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQA 104
+K + + ++ I N + IP P+ +F +P +LR L++ P+PIQ
Sbjct: 69 RKMSTKQMDLIRKQWHITVNGE-DIPPPIKNFMD--MKFPSPLLRMLKDKGIMHPTPIQV 125
Query: 105 QAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTT---PISERAGPSVLVMAPTRE 161
Q P+++SG DMIGIA TG+GKT F+LP +I LQ PI+ GP LV+ P+RE
Sbjct: 126 QGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILA-LQEEIMMPIAAGEGPIALVICPSRE 184
Query: 162 LATQ----IEREVNKI--D-YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFV 214
LA Q +E+ V + D Y L+++ GG ++ QL+ +++G HI++ATPGRL D +
Sbjct: 185 LAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDIL 244
Query: 215 SRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKK 274
++ + L A + LDEADR++DLGFE I + RQT++ SAT +Q A
Sbjct: 245 AKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATS 304
Query: 275 YMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKAS 334
+V PV VNVG AA V Q++ + ++ K +L+E + + V++F KA
Sbjct: 305 ALVKPVTVNVGRAG-AANLDVIQEVEYVKQEAKIVYLLEC---LQKTTPPVLIFCENKAD 360
Query: 335 VSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHV 394
V + L + ++ +++G QEDR+ A+ +G + VATDVAS+GLD PD+ HV
Sbjct: 361 VDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHV 420
Query: 395 INYDFPSHIEEYVHRVGRTGRAGKSGESITLMTR 428
INYD P IE YVHR+GRTGR GK+G + T + +
Sbjct: 421 INYDMPGEIENYVHRIGRTGRCGKTGIATTFINK 454
Score = 621 (223.7 bits), Expect = 2.2e-60, P = 2.2e-60
Identities = 158/434 (36%), Positives = 235/434 (54%)
Query: 513 RHIDPEPTMEELMALSDRKERDKWAREPKIIKNV-YKEDPEVANMTPEQVEAFRKKNNDI 571
R + EP + LSD+K K ++ + + Y E P V K D+
Sbjct: 22 RKVVEEPGKGMMEHLSDKK---KLMSVGELARGITYTEPLSTWWKPPLHVRKMSTKQMDL 78
Query: 572 SVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPIL 630
+ I N + IP P+ +F +P +LR L++ P+PIQ Q P++
Sbjct: 79 ----IRKQWHITVNGE-DIPPPIKNFMD--MKFPSPLLRMLKDKGIMHPTPIQVQGLPVV 131
Query: 631 MSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTT---PISERAGPSVLVMAPTRELATQ-- 685
+SG DMIGIA TG+GKT F+LP +I LQ PI+ GP LV+ P+RELA Q
Sbjct: 132 LSGRDMIGIAFTGSGKTLVFVLPMIILA-LQEEIMMPIAAGEGPIALVICPSRELAKQTY 190
Query: 686 --IEREVNKI--D-YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASID 740
+E+ V + D Y L+++ GG ++ QL+ +++G HI++ATPGRL D +++ +
Sbjct: 191 DVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMS 250
Query: 741 LKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPV 800
L A + LDEADR++DLGFE I + RQT++ SAT +Q A +V PV
Sbjct: 251 LDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSALVKPV 310
Query: 801 KVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSS 860
VNVG AA V Q++ + ++ K +L+E + + V++F KA V +
Sbjct: 311 TVNVGRAG-AANLDVIQEVEYVKQEAKIVYLLEC---LQKTTPPVLIFCENKADVDDIHE 366
Query: 861 DLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFP 920
L + ++ +++G QEDR+ A+ +G + VATDVAS+GLD PD+ HVINYD P
Sbjct: 367 YLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMP 426
Query: 921 SHIEEYVHRVGRTG 934
IE YVHR+GRTG
Sbjct: 427 GEIENYVHRIGRTG 440
>RGD|2314437 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked"
species:10116 "Rattus norvegicus" [GO:0005737 "cytoplasm"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:2314437 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K11594 CTD:8653
EMBL:FJ775727 IPI:IPI00196210 RefSeq:NP_001161137.1
UniGene:Rn.95841 ProteinModelPortal:C9WPN2 PRIDE:C9WPN2
GeneID:100312982 KEGG:rno:100312982 UCSC:RGD:2314437 Uniprot:C9WPN2
Length = 652
Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
Identities = 151/380 (39%), Positives = 225/380 (59%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPAL--IHTH----- 139
I+ +E +T P+P+Q A PI+ D++ AQTG+G T AFLLP L I+T
Sbjct: 184 IMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGCTAAFLLPILSQIYTDGPGEA 243
Query: 140 LQTTPISERAG-----PSVLVMAPTRELATQIEREVNKIDYKGLKAVCV-YGGKEIEPQL 193
L+ + R G P LV+APTRELA QI E K Y+ CV YGG + Q+
Sbjct: 244 LKAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADTVQQI 303
Query: 194 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT--SIYI 251
+ GCH+L+ATPGRL D + R I L ++VLDEADRMLD+GFEPQI + +
Sbjct: 304 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTM 363
Query: 252 NPN--RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKD 309
P R T+M SAT+ K++Q +A+ ++ + + VG + + + +TQK++ ++E +K+
Sbjct: 364 PPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEELDKRS 422
Query: 310 WLMEFFDNMDEERDKV-MVFMGRKASVSAMSSDLACQYRKSC-SLYGDLSQEDREIALED 367
+L++ + RD + +VF+ K ++ + L Q R +C S++GD SQ+DRE AL
Sbjct: 423 FLLDLLNATG--RDSLTLVFVETKKGADSLENFLF-QERYACTSIHGDRSQKDREEALHQ 479
Query: 368 ITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMT 427
SG I VAT VA+RGLD+ ++ HVIN+D PS IEEYVHR+GRTGR G G + +
Sbjct: 480 FRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFN 539
Query: 428 RKDWSHAHEIIPILEEGGHE 447
++ + +++ +L E E
Sbjct: 540 ERNLNITKDLLDLLVEAKQE 559
Score = 616 (221.9 bits), Expect = 8.1e-60, P = 8.1e-60
Identities = 145/347 (41%), Positives = 210/347 (60%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPAL--IHTH----- 659
I+ +E +T P+P+Q A PI+ D++ AQTG+G T AFLLP L I+T
Sbjct: 184 IMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGCTAAFLLPILSQIYTDGPGEA 243
Query: 660 LQTTPISERAG-----PSVLVMAPTRELATQIEREVNKIDYKGLKAVCV-YGGKELEPQL 713
L+ + R G P LV+APTRELA QI E K Y+ CV YGG + Q+
Sbjct: 244 LKAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADTVQQI 303
Query: 714 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT--SIYI 771
+ GCH+L+ATPGRL D + R I L ++VLDEADRMLD+GFEPQI + +
Sbjct: 304 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTM 363
Query: 772 NPN--RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKD 829
P R T+M SAT+ K++Q +A+ ++ + + VG + + + +TQK++ ++E +K+
Sbjct: 364 PPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEELDKRS 422
Query: 830 WLMEFFDNMDEERDKV-MVFMGRKASVSAMSSDLACQYRKSC-SLYGDLSQEDREIALED 887
+L++ + RD + +VF+ K ++ + L Q R +C S++GD SQ+DRE AL
Sbjct: 423 FLLDLLNATG--RDSLTLVFVETKKGADSLENFLF-QERYACTSIHGDRSQKDREEALHQ 479
Query: 888 ITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
SG I VAT VA+RGLD+ ++ HVIN+D PS IEEYVHR+GRTG
Sbjct: 480 FRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTG 526
>WB|WBGene00006888 [details] [associations]
symbol:vbh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0032502 "developmental process"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0042006 "masculinization of hermaphroditic
germ-line" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003676 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN EMBL:FO081614
GO:GO:0042006 RefSeq:NP_001021793.1 UniGene:Cel.16952
ProteinModelPortal:Q65XX1 SMR:Q65XX1 IntAct:Q65XX1
MINT:MINT-6669731 STRING:Q65XX1 PaxDb:Q65XX1 PRIDE:Q65XX1
EnsemblMetazoa:Y54E10A.9c.1 EnsemblMetazoa:Y54E10A.9c.2
GeneID:171888 KEGG:cel:CELE_Y54E10A.9 UCSC:Y54E10A.9a CTD:171888
WormBase:Y54E10A.9c InParanoid:Q65XX1 NextBio:873115
ArrayExpress:Q65XX1 Uniprot:Q65XX1
Length = 660
Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
Identities = 151/393 (38%), Positives = 226/393 (57%)
Query: 70 IPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 129
+P + F +A P ++ + ++ P+P+Q + P L++ D++ AQTG+GKT A
Sbjct: 134 VPAAIEHFNEA-GFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAA 192
Query: 130 FLLPALIHTHL----QTTPISERAG-----PSVLVMAPTRELATQIEREVNKIDYKG-LK 179
FLLP + H P + G P LV++PTRELA QI +E K YK ++
Sbjct: 193 FLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSNIQ 252
Query: 180 AVCVYGGKE-IEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDL 238
+YGG+E Q+ ++R G HILIATPGRL D + + I L ++VLDEADRMLD+
Sbjct: 253 TAILYGGRENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLDM 312
Query: 239 GFEPQINK-TSIYINPN--RQTVMTSATWNKDVQRVAKKYMV-NPVKVNVGSLDLAATHT 294
GFEPQI K + P R T M SAT+ K++Q +AK ++ N + + VG + + +
Sbjct: 313 GFEPQIRKIVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVG-STSEN 371
Query: 295 VTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYG 354
+ Q+++ ++E EK+ LME N E + V+VF+ K + ++ L Q +S S++G
Sbjct: 372 IEQRLLWVNEMEKRSNLMEILMNEHSE-NLVLVFVETKRGANELAYFLNRQQIRSVSIHG 430
Query: 355 DLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 414
DL Q +RE LE SG I VAT VA+RGLD+P++ HVINYD P +EYVHR+GRTG
Sbjct: 431 DLKQIERERNLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTG 490
Query: 415 RAGKSGESITLMTRKDWSHAHEIIPILEEGGHE 447
R G G + + K+ ++ ++ E E
Sbjct: 491 RCGNLGIATSFFNDKNRGIGRDLKNLIVESNQE 523
Score = 621 (223.7 bits), Expect = 2.2e-60, P = 2.2e-60
Identities = 145/360 (40%), Positives = 213/360 (59%)
Query: 590 IPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 649
+P + F +A P ++ + ++ P+P+Q + P L++ D++ AQTG+GKT A
Sbjct: 134 VPAAIEHFNEA-GFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAA 192
Query: 650 FLLPALIHTHL----QTTPISERAG-----PSVLVMAPTRELATQIEREVNKIDYKG-LK 699
FLLP + H P + G P LV++PTRELA QI +E K YK ++
Sbjct: 193 FLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSNIQ 252
Query: 700 AVCVYGGKE-LEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDL 758
+YGG+E Q+ ++R G HILIATPGRL D + + I L ++VLDEADRMLD+
Sbjct: 253 TAILYGGRENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLDM 312
Query: 759 GFEPQINK-TSIYINPN--RQTVMTSATWNKDVQRVAKKYMV-NPVKVNVGSLDLAATHT 814
GFEPQI K + P R T M SAT+ K++Q +AK ++ N + + VG + + +
Sbjct: 313 GFEPQIRKIVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVG-STSEN 371
Query: 815 VTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYG 874
+ Q+++ ++E EK+ LME N E + V+VF+ K + ++ L Q +S S++G
Sbjct: 372 IEQRLLWVNEMEKRSNLMEILMNEHSE-NLVLVFVETKRGANELAYFLNRQQIRSVSIHG 430
Query: 875 DLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
DL Q +RE LE SG I VAT VA+RGLD+P++ HVINYD P +EYVHR+GRTG
Sbjct: 431 DLKQIERERNLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTG 490
>FB|FBgn0263231 [details] [associations]
symbol:bel "belle" species:7227 "Drosophila melanogaster"
[GO:0007286 "spermatid development" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=IMP] [GO:0002168 "instar larval
development" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0016442 "RNA-induced silencing complex" evidence=IDA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0005811 "lipid
particle" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0043025 "neuronal cell body" evidence=IDA] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005875 GO:GO:0016246 GO:GO:0007286
GO:GO:0005811 GO:GO:0043025 GO:GO:0048477 GO:GO:0003723
GO:GO:0000070 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0002168 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 KO:K11594 HSSP:P09052 EMBL:AY089613
RefSeq:NP_536783.1 UniGene:Dm.7823 ProteinModelPortal:Q9VHP0
SMR:Q9VHP0 IntAct:Q9VHP0 STRING:Q9VHP0 PaxDb:Q9VHP0 PRIDE:Q9VHP0
EnsemblMetazoa:FBtr0081888 GeneID:45826 KEGG:dme:Dmel_CG9748
UCSC:CG9748-RA CTD:100035747 FlyBase:FBgn0263231 InParanoid:Q9VHP0
OMA:TILWVYE OrthoDB:EOG4DNCKG PhylomeDB:Q9VHP0 GenomeRNAi:45826
NextBio:838377 Bgee:Q9VHP0 Uniprot:Q9VHP0
Length = 798
Score = 642 (231.1 bits), Expect = 7.0e-63, P = 7.0e-63
Identities = 152/396 (38%), Positives = 231/396 (58%)
Query: 560 QVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLS-FTT 618
+VE F N I+ D ++ +P +TSF EI+R L+ +
Sbjct: 262 EVELFGVGNTGINFDKY-EDIPVEATGQ-NVPPNITSFDDV--QLTEIIRNNVALARYDK 317
Query: 619 PSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHT----HL----QTTPISERAG 670
P+P+Q A PI+++G D++ AQTG+GKT AFL+P L H+ T S R
Sbjct: 318 PTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTRQYSRRKQ 377
Query: 671 -PSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGGKELEPQLEKIREGCHILIATPG 728
P LV+APTRELATQI E K Y+ ++ +YGG Q+ ++ GCH+++ATPG
Sbjct: 378 YPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPG 437
Query: 729 RLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYIN-P---NRQTVMTSATW 784
RL D ++R + L+ + F+VLDEADRMLD+GFEPQI + +N P RQT+M SAT+
Sbjct: 438 RLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPTGQRQTLMFSATF 497
Query: 785 NKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFF----DNMDE 840
K +Q +A ++ N + + VG + + + +TQ I+ + E +K+ +L++ D +
Sbjct: 498 PKQIQELASDFLSNYIFLAVGRVG-STSENITQTILWVYEPDKRSYLLDLLSSIRDGPEY 556
Query: 841 ERDKV-MVFMGRKASVSAMSSDL-ACQYRKSCSLYGDLSQEDREIALEDITSGYARICVA 898
+D + ++F+ K ++ L C + + S++GD +Q++RE AL SG I VA
Sbjct: 557 TKDSLTLIFVETKKGADSLEEFLYQCNHPVT-SIHGDRTQKEREEALRCFRSGDCPILVA 615
Query: 899 TDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
T VA+RGLD+P + HVIN+D PS +EEYVHR+GRTG
Sbjct: 616 TAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTG 651
Score = 567 (204.7 bits), Expect = 7.2e-53, P = 7.2e-53
Identities = 123/313 (39%), Positives = 192/313 (61%)
Query: 151 PSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGGKEIEPQLEKIREGCHILIATPGR 209
P LV+APTRELATQI E K Y+ ++ +YGG Q+ ++ GCH+++ATPGR
Sbjct: 379 PLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGR 438
Query: 210 LNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYIN--P--NRQTVMTSATWN 265
L D ++R + L+ + F+VLDEADRMLD+GFEPQI + +N P RQT+M SAT+
Sbjct: 439 LEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPTGQRQTLMFSATFP 498
Query: 266 KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFF----DNMDEE 321
K +Q +A ++ N + + VG + + + +TQ I+ + E +K+ +L++ D +
Sbjct: 499 KQIQELASDFLSNYIFLAVGRVG-STSENITQTILWVYEPDKRSYLLDLLSSIRDGPEYT 557
Query: 322 RDKV-MVFMGRKASVSAMSSDL-ACQYRKSCSLYGDLSQEDREIALEDITSGYARICVAT 379
+D + ++F+ K ++ L C + + S++GD +Q++RE AL SG I VAT
Sbjct: 558 KDSLTLIFVETKKGADSLEEFLYQCNHPVT-SIHGDRTQKEREEALRCFRSGDCPILVAT 616
Query: 380 DVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIP 439
VA+RGLD+P + HVIN+D PS +EEYVHR+GRTGR G G + + K+ + +++
Sbjct: 617 AVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEKNRNICSDLLE 676
Query: 440 ILEEGGHE--SYM 450
+L E E S+M
Sbjct: 677 LLIETKQEIPSFM 689
Score = 451 (163.8 bits), Expect = 1.9e-39, P = 1.9e-39
Identities = 109/294 (37%), Positives = 170/294 (57%)
Query: 40 QVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLS-FTT 98
+VE F N I+ D ++ +P +TSF EI+R L+ +
Sbjct: 262 EVELFGVGNTGINFDKY-EDIPVEATGQ-NVPPNITSFDDV--QLTEIIRNNVALARYDK 317
Query: 99 PSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHT----HL---QTT-PISERAG 150
P+P+Q A PI+++G D++ AQTG+GKT AFL+P L H+ Q+T S R
Sbjct: 318 PTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTRQYSRRKQ 377
Query: 151 -PSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGGKEIEPQLEKIREGCHILIATPG 208
P LV+APTRELATQI E K Y+ ++ +YGG Q+ ++ GCH+++ATPG
Sbjct: 378 YPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPG 437
Query: 209 RLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYIN-P---NRQTVMTSATW 264
RL D ++R + L+ + F+VLDEADRMLD+GFEPQI + +N P RQT+M SAT+
Sbjct: 438 RLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPTGQRQTLMFSATF 497
Query: 265 NKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNM 318
K +Q +A ++ N + + VG + + + +TQ I+ + E +K+ +L++ ++
Sbjct: 498 PKQIQELASDFLSNYIFLAVGRVG-STSENITQTILWVYEPDKRSYLLDLLSSI 550
>UNIPROTKB|Q6GWX0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9823 "Sus scrofa" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 EMBL:AY626785 RefSeq:NP_001001910.1 UniGene:Ssc.42782
ProteinModelPortal:Q6GWX0 SMR:Q6GWX0 STRING:Q6GWX0 GeneID:431672
KEGG:ssc:431672 Uniprot:Q6GWX0
Length = 722
Score = 642 (231.1 bits), Expect = 7.0e-63, P = 7.0e-63
Identities = 148/403 (36%), Positives = 237/403 (58%)
Query: 71 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 130
P + +F++A + + +T +P+Q + PI+++G D++ AQTG+GKT AF
Sbjct: 282 PPAILTFEEA-NLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAF 340
Query: 131 LLPALIHT-H--LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGG 186
LLP L H H + + E P +++APTREL QI E K + ++AV +YGG
Sbjct: 341 LLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGG 400
Query: 187 KEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINK 246
++ + +I +GC+IL ATPGRL D + + I LK + ++VLDEADRMLD+GF P++ K
Sbjct: 401 TQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKK 460
Query: 247 T-SIYINPN---RQTVMTSATWNKDVQRVAKKYMV-NPVKVNVGSLDLAATHTVTQKIII 301
S P+ RQT+M SAT+ +++QR+A +++ N + V VG + A V Q +
Sbjct: 461 LISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVG-GACRDVQQADLQ 519
Query: 302 LDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSC-SLYGDLSQED 360
+ + K++ L+E N+ +ER MVF+ K +++ L CQ + S S++GD Q +
Sbjct: 520 VGQYSKREKLLEILRNIGDER--TMVFVETKKKADFIATFL-CQEKISTTSIHGDREQRE 576
Query: 361 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSG 420
RE AL D G + VAT VA+RGLD+ ++ HVIN+D PS I+EYVHR+GRTGR G +G
Sbjct: 577 REQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTG 636
Query: 421 ESITLMTRKDWSH-AHEIIPILEEGGHESYMIWRRDSRIALHV 462
+I+ + +H A ++ +L + + W + + ++
Sbjct: 637 RAISFFDLESDNHLAQPLVKVLTDA-QQDVPAWLEEIAFSTYI 678
Score = 609 (219.4 bits), Expect = 8.9e-61, Sum P(2) = 8.9e-61
Identities = 141/354 (39%), Positives = 215/354 (60%)
Query: 591 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 650
P + +F++A + + +T +P+Q + PI+++G D++ AQTG+GKT AF
Sbjct: 282 PPAILTFEEA-NLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAF 340
Query: 651 LLPALIHT-H--LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGG 706
LLP L H H + + E P +++APTREL QI E K + ++AV +YGG
Sbjct: 341 LLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGG 400
Query: 707 KELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINK 766
+L + +I +GC+IL ATPGRL D + + I LK + ++VLDEADRMLD+GF P++ K
Sbjct: 401 TQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKK 460
Query: 767 T-SIYINPN---RQTVMTSATWNKDVQRVAKKYMV-NPVKVNVGSLDLAATHTVTQKIII 821
S P+ RQT+M SAT+ +++QR+A +++ N + V VG + A V Q +
Sbjct: 461 LISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVG-GACRDVQQADLQ 519
Query: 822 LDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSC-SLYGDLSQED 880
+ + K++ L+E N+ +ER MVF+ K +++ L CQ + S S++GD Q +
Sbjct: 520 VGQYSKREKLLEILRNIGDER--TMVFVETKKKADFIATFL-CQEKISTTSIHGDREQRE 576
Query: 881 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
RE AL D G + VAT VA+RGLD+ ++ HVIN+D PS I+EYVHR+GRTG
Sbjct: 577 REQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTG 630
Score = 38 (18.4 bits), Expect = 8.9e-61, Sum P(2) = 8.9e-61
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 402 HIEEYVHRVGRTGRAGKSGESITLMT 427
H+ YV + G +G++G+ T
Sbjct: 13 HVSSYVPIFEKDGYSGENGDKFNRTT 38
>UNIPROTKB|F1NIX2 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 EMBL:AADN02011031 IPI:IPI00579247
Ensembl:ENSGALT00000026171 ArrayExpress:F1NIX2 Uniprot:F1NIX2
Length = 636
Score = 642 (231.1 bits), Expect = 7.0e-63, P = 7.0e-63
Identities = 148/379 (39%), Positives = 219/379 (57%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH------- 139
I+ +E +T P+P+Q A PI+ D++ AQTG+GKT AFLLP L +
Sbjct: 167 IMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGDA 226
Query: 140 LQTTPISE-RAG-----PSVLVMAPTRELATQIEREVNKIDYKGLKAVCV-YGGKEIEPQ 192
L+ + R G P LV+APTRELA QI E K Y+ CV YGG +I Q
Sbjct: 227 LRAMKATNGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQ 286
Query: 193 LEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT--SIY 250
+ + GCH+L+ATPGRL D + R I L ++VLDEADRMLD+GFEPQI +
Sbjct: 287 IRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDT 346
Query: 251 INPN--RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKK 308
+ P R T+M SAT+ K++Q +A+ ++ + + VG + + + +TQK++ ++E +K+
Sbjct: 347 MPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEELDKR 405
Query: 309 DWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDI 368
+L++ N + +VF+ K A+ L + S++GD SQ DRE AL
Sbjct: 406 SFLLDLL-NATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQF 464
Query: 369 TSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTR 428
SG + I VAT VA+RGLD+ ++ HVIN+D PS IEEYVHR+GRTGR G G + +
Sbjct: 465 RSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNE 524
Query: 429 KDWSHAHEIIPILEEGGHE 447
++ + +++ +L E E
Sbjct: 525 RNINITKDLLDLLVEAKQE 543
Score = 613 (220.8 bits), Expect = 1.8e-59, P = 1.8e-59
Identities = 141/346 (40%), Positives = 204/346 (58%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH------- 659
I+ +E +T P+P+Q A PI+ D++ AQTG+GKT AFLLP L +
Sbjct: 167 IMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGDA 226
Query: 660 LQTTPISE-RAG-----PSVLVMAPTRELATQIEREVNKIDYKGLKAVCV-YGGKELEPQ 712
L+ + R G P LV+APTRELA QI E K Y+ CV YGG ++ Q
Sbjct: 227 LRAMKATNGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQ 286
Query: 713 LEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT--SIY 770
+ + GCH+L+ATPGRL D + R I L ++VLDEADRMLD+GFEPQI +
Sbjct: 287 IRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDT 346
Query: 771 INPN--RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKK 828
+ P R T+M SAT+ K++Q +A+ ++ + + VG + + + +TQK++ ++E +K+
Sbjct: 347 MPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEELDKR 405
Query: 829 DWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDI 888
+L++ N + +VF+ K A+ L + S++GD SQ DRE AL
Sbjct: 406 SFLLDLL-NATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQF 464
Query: 889 TSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
SG + I VAT VA+RGLD+ ++ HVIN+D PS IEEYVHR+GRTG
Sbjct: 465 RSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTG 510
>UNIPROTKB|E2RMU5 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0033391 "chromatoid body" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0007283
GO:GO:0003676 GO:GO:0030317 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:RDAGESN GO:GO:0000237 EMBL:AAEX03001439
Ensembl:ENSCAFT00000011062 Uniprot:E2RMU5
Length = 728
Score = 641 (230.7 bits), Expect = 9.5e-63, P = 9.5e-63
Identities = 149/403 (36%), Positives = 238/403 (59%)
Query: 71 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 130
P + +F++A + + +T +P+Q + PI+++G D++ AQTG+GKT AF
Sbjct: 285 PPAILTFEEA-NLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAF 343
Query: 131 LLPALIHT-H--LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGG 186
LLP L H H + + E P +++APTREL QI E K + ++AV +YGG
Sbjct: 344 LLPILAHMMHDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGG 403
Query: 187 KEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINK 246
++ + +I +GC+IL ATPGRL D + + I L+ V ++VLDEADRMLD+GF P++ K
Sbjct: 404 TQLGYSIRQIVQGCNILCATPGRLMDIIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKK 463
Query: 247 T-SIYINPN---RQTVMTSATWNKDVQRVAKKYMV-NPVKVNVGSLDLAATHTVTQKIII 301
S P+ RQT+M SAT+ +++QR+A +++ N + V VG + A V Q I+
Sbjct: 464 LISCPGMPSKEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVG-GACRDVQQTILQ 522
Query: 302 LDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSC-SLYGDLSQED 360
+ + K++ L+E ++ +ER MVF+ K +++ L CQ + S S++GD Q +
Sbjct: 523 VGQYSKREKLVEILRSIGDER--TMVFVETKKKADFIATFL-CQEKISTTSIHGDREQRE 579
Query: 361 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSG 420
RE AL D G + VAT VA+RGLD+ ++ HVIN+D PS I+EYVHR+GRTGR G +G
Sbjct: 580 REQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTG 639
Query: 421 ESITLMTRKDWSH-AHEIIPILEEGGHESYMIWRRDSRIALHV 462
+I+ + +H A ++ +L + + W + + +V
Sbjct: 640 RAISFFDPESDNHLAQPLVKVLSDA-QQDVPAWLEEIAFSTYV 681
Score = 606 (218.4 bits), Expect = 1.1e-58, P = 1.1e-58
Identities = 141/354 (39%), Positives = 216/354 (61%)
Query: 591 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 650
P + +F++A + + +T +P+Q + PI+++G D++ AQTG+GKT AF
Sbjct: 285 PPAILTFEEA-NLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAF 343
Query: 651 LLPALIHT-H--LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGG 706
LLP L H H + + E P +++APTREL QI E K + ++AV +YGG
Sbjct: 344 LLPILAHMMHDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGG 403
Query: 707 KELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINK 766
+L + +I +GC+IL ATPGRL D + + I L+ V ++VLDEADRMLD+GF P++ K
Sbjct: 404 TQLGYSIRQIVQGCNILCATPGRLMDIIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKK 463
Query: 767 T-SIYINPN---RQTVMTSATWNKDVQRVAKKYMV-NPVKVNVGSLDLAATHTVTQKIII 821
S P+ RQT+M SAT+ +++QR+A +++ N + V VG + A V Q I+
Sbjct: 464 LISCPGMPSKEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVG-GACRDVQQTILQ 522
Query: 822 LDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSC-SLYGDLSQED 880
+ + K++ L+E ++ +ER MVF+ K +++ L CQ + S S++GD Q +
Sbjct: 523 VGQYSKREKLVEILRSIGDER--TMVFVETKKKADFIATFL-CQEKISTTSIHGDREQRE 579
Query: 881 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
RE AL D G + VAT VA+RGLD+ ++ HVIN+D PS I+EYVHR+GRTG
Sbjct: 580 REQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTG 633
>UNIPROTKB|D4ADV9 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 IPI:IPI00782021 Ensembl:ENSRNOT00000060732
Uniprot:D4ADV9
Length = 674
Score = 640 (230.4 bits), Expect = 1.2e-62, P = 1.2e-62
Identities = 147/384 (38%), Positives = 230/384 (59%)
Query: 71 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 130
P + +F++A + + +T +P+Q + PI+++G D++ AQTG+GKT AF
Sbjct: 258 PPAILTFEEA-NLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAF 316
Query: 131 LLPALIHTH---LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGG 186
LLP L H + + E P +++APTREL QI E K + ++AV +YGG
Sbjct: 317 LLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGG 376
Query: 187 KEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINK 246
+ + +I +GC+IL ATPGRL D + + I LK V ++VLDEADRMLD+GF P++ K
Sbjct: 377 TQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKK 436
Query: 247 T-SIYINPN---RQTVMTSATWNKDVQRVAKKYMV-NPVKVNVGSLDLAATHTVTQKIII 301
S P+ RQT++ SAT+ +++QR+A +++ N + V VG + A V Q I+
Sbjct: 437 LISCPGMPSKEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVG-GACRDVQQSILQ 495
Query: 302 LDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSC-SLYGDLSQED 360
+ + K++ L+E N+ +ER MVF+ K +++ L CQ + S S++GD Q +
Sbjct: 496 VGQYSKREKLVEILRNIGDER--TMVFVETKKKADFIATFL-CQEKISTTSIHGDREQRE 552
Query: 361 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSG 420
RE AL D G + VAT VA+RGLD+ ++ HVIN+D PS I+EYVHR+GRTGR G +G
Sbjct: 553 REQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTG 612
Query: 421 ESITLMTRKDWSH-AHEIIPILEE 443
+I+ + +H A ++ +L +
Sbjct: 613 RAISFFDTESDNHLAQPLVKVLSD 636
Score = 605 (218.0 bits), Expect = 1.4e-58, P = 1.4e-58
Identities = 140/354 (39%), Positives = 214/354 (60%)
Query: 591 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 650
P + +F++A + + +T +P+Q + PI+++G D++ AQTG+GKT AF
Sbjct: 258 PPAILTFEEA-NLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAF 316
Query: 651 LLPALIHTH---LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGG 706
LLP L H + + E P +++APTREL QI E K + ++AV +YGG
Sbjct: 317 LLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGG 376
Query: 707 KELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINK 766
+ + +I +GC+IL ATPGRL D + + I LK V ++VLDEADRMLD+GF P++ K
Sbjct: 377 TQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKK 436
Query: 767 T-SIYINPN---RQTVMTSATWNKDVQRVAKKYMV-NPVKVNVGSLDLAATHTVTQKIII 821
S P+ RQT++ SAT+ +++QR+A +++ N + V VG + A V Q I+
Sbjct: 437 LISCPGMPSKEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVG-GACRDVQQSILQ 495
Query: 822 LDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSC-SLYGDLSQED 880
+ + K++ L+E N+ +ER MVF+ K +++ L CQ + S S++GD Q +
Sbjct: 496 VGQYSKREKLVEILRNIGDER--TMVFVETKKKADFIATFL-CQEKISTTSIHGDREQRE 552
Query: 881 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
RE AL D G + VAT VA+RGLD+ ++ HVIN+D PS I+EYVHR+GRTG
Sbjct: 553 REQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTG 606
>UNIPROTKB|F1N991 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000237 "leptotene"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0033391 "chromatoid body" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 GO:GO:0000237
OMA:GINFDKF EMBL:AADN02054551 EMBL:AADN02054552 EMBL:AADN02054553
IPI:IPI00819436 ProteinModelPortal:F1N991
Ensembl:ENSGALT00000023724 Uniprot:F1N991
Length = 568
Score = 640 (230.4 bits), Expect = 1.2e-62, P = 1.2e-62
Identities = 144/399 (36%), Positives = 234/399 (58%)
Query: 71 PNPVTSFKQAFQHYPEILRQ-LENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 129
P P+ +F++A ++ + LR+ + ++ +P+Q + P++ +G D++ AQTG+GKT A
Sbjct: 163 PAPLLAFEEA--NFAQTLRKNISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAA 220
Query: 130 FLLPA---LIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYG 185
FLLP ++ + + ++ P +++APTREL QI E K Y ++ V +YG
Sbjct: 221 FLLPIVDRMMKDGVTASAFQKQQEPQCIIVAPTRELINQIFLEARKFVYGTCIRPVVIYG 280
Query: 186 GKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQIN 245
G + + +I +GC+IL ATPGRL D + + I L V ++VLDEADRMLD+GF +
Sbjct: 281 GTQTGHSIRQIMQGCNILCATPGRLLDIIEKGKISLVEVKYLVLDEADRMLDMGFGLDMK 340
Query: 246 KTSIYIN-PN---RQTVMTSATWNKDVQRVAKKYM-VNPVKVNVGSLDLAATHTVTQKII 300
K Y P+ RQT+M SAT+ ++VQR+A +++ + + + +G+ A V Q I+
Sbjct: 341 KLISYPEMPSKDRRQTLMFSATFPEEVQRLAGEFLKTDYIFLVIGNT-CGACSDVQQNIL 399
Query: 301 ILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQED 360
+ K+D L+E + ER MVF+ K +++ L + S S++GD Q +
Sbjct: 400 QVPRLSKRDKLIEILQSTGGER--TMVFVDTKKKADYLAAFLCQENLPSTSIHGDREQRE 457
Query: 361 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSG 420
REIAL D SG +I VAT VASRGLD+ ++ HVIN+D P+ IE+YVHR+GRTGR G +G
Sbjct: 458 REIALRDFRSGKCQILVATSVASRGLDIENVQHVINFDLPNTIEDYVHRIGRTGRCGNTG 517
Query: 421 ESITLMTRKDWSH-AHEIIPILEEGGHESYMIWRRDSRI 458
++++ + H ++ +L E E +W + +
Sbjct: 518 KAVSFFDDQSDGHLVQSLLKVLSEAQQE-VPVWLEEMAV 555
Score = 602 (217.0 bits), Expect = 3.1e-58, P = 3.1e-58
Identities = 136/354 (38%), Positives = 214/354 (60%)
Query: 591 PNPVTSFKQAFQHYPEILRQ-LENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 649
P P+ +F++A ++ + LR+ + ++ +P+Q + P++ +G D++ AQTG+GKT A
Sbjct: 163 PAPLLAFEEA--NFAQTLRKNISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAA 220
Query: 650 FLLPA---LIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYG 705
FLLP ++ + + ++ P +++APTREL QI E K Y ++ V +YG
Sbjct: 221 FLLPIVDRMMKDGVTASAFQKQQEPQCIIVAPTRELINQIFLEARKFVYGTCIRPVVIYG 280
Query: 706 GKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQIN 765
G + + +I +GC+IL ATPGRL D + + I L V ++VLDEADRMLD+GF +
Sbjct: 281 GTQTGHSIRQIMQGCNILCATPGRLLDIIEKGKISLVEVKYLVLDEADRMLDMGFGLDMK 340
Query: 766 KTSIYIN-PN---RQTVMTSATWNKDVQRVAKKYM-VNPVKVNVGSLDLAATHTVTQKII 820
K Y P+ RQT+M SAT+ ++VQR+A +++ + + + +G+ A V Q I+
Sbjct: 341 KLISYPEMPSKDRRQTLMFSATFPEEVQRLAGEFLKTDYIFLVIGNT-CGACSDVQQNIL 399
Query: 821 ILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQED 880
+ K+D L+E + ER MVF+ K +++ L + S S++GD Q +
Sbjct: 400 QVPRLSKRDKLIEILQSTGGER--TMVFVDTKKKADYLAAFLCQENLPSTSIHGDREQRE 457
Query: 881 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
REIAL D SG +I VAT VASRGLD+ ++ HVIN+D P+ IE+YVHR+GRTG
Sbjct: 458 REIALRDFRSGKCQILVATSVASRGLDIENVQHVINFDLPNTIEDYVHRIGRTG 511
>RGD|1308685 [details] [associations]
symbol:Ddx23 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 23"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005682 "U5 snRNP"
evidence=IEA;ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0005886 "plasma membrane" evidence=IEA;ISO] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1308685 GO:GO:0005524
GO:GO:0003676 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CH474035 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE
RefSeq:NP_001100263.2 UniGene:Rn.2319 Ensembl:ENSRNOT00000055529
GeneID:300208 KEGG:rno:300208 NextBio:646540 Uniprot:G3V9M1
Length = 819
Score = 380 (138.8 bits), Expect = 1.8e-57, Sum P(4) = 1.8e-57
Identities = 95/255 (37%), Positives = 145/255 (56%)
Query: 521 MEELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDI---SVSVVT 577
ME+ L ++++ + AR K+ K K+ + + + ++++ ++ I S+ T
Sbjct: 323 MEKRRTLEEKEQEE--ARLRKLRKKEAKQRWDDRHWSQKKLDEMTDRDWRIFREDYSITT 380
Query: 578 SDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMI 637
G+I PNP+ S+K + P IL ++ + P+PIQ QA PI + D+I
Sbjct: 381 KGGKI--------PNPIRSWKDSSLP-PHILEVIDKCGYKEPTPIQRQAIPIGLQNRDII 431
Query: 638 GIAQTGTGKTFAFLLPALIHTHLQTTPISERA-----GPSVLVMAPTRELATQIEREVNK 692
G+A+TG+GKT AFL+P L+ + T P +R GP +++APTRELA QIE E K
Sbjct: 432 GVAETGSGKTAAFLIPLLVW--ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIK 489
Query: 693 IDYK-GLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDE 751
G++ V V GG E Q ++R GC I+IATPGRL D + + L ++VVLDE
Sbjct: 490 FGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDE 549
Query: 752 ADRMLDLGFEPQINK 766
ADRM+D+GFEP + K
Sbjct: 550 ADRMIDMGFEPDVQK 564
Score = 379 (138.5 bits), Expect = 2.3e-62, Sum P(2) = 2.3e-62
Identities = 95/255 (37%), Positives = 145/255 (56%)
Query: 1 MEELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDI---SVSVVT 57
ME+ L ++++ + AR K+ K K+ + + + ++++ ++ I S+ T
Sbjct: 323 MEKRRTLEEKEQEE--ARLRKLRKKEAKQRWDDRHWSQKKLDEMTDRDWRIFREDYSITT 380
Query: 58 SDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMI 117
G+I PNP+ S+K + P IL ++ + P+PIQ QA PI + D+I
Sbjct: 381 KGGKI--------PNPIRSWKDSSLP-PHILEVIDKCGYKEPTPIQRQAIPIGLQNRDII 431
Query: 118 GIAQTGTGKTFAFLLPALIHTHLQTTPISERA-----GPSVLVMAPTRELATQIEREVNK 172
G+A+TG+GKT AFL+P L+ + T P +R GP +++APTRELA QIE E K
Sbjct: 432 GVAETGSGKTAAFLIPLLVW--ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIK 489
Query: 173 IDYK-GLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDE 231
G++ V V GG E Q ++R GC I+IATPGRL D + + L ++VVLDE
Sbjct: 490 FGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDE 549
Query: 232 ADRMLDLGFEPQINK 246
ADRM+D+GFEP + K
Sbjct: 550 ADRMIDMGFEPDVQK 564
Score = 343 (125.8 bits), Expect = 2.3e-62, Sum P(2) = 2.3e-62
Identities = 70/183 (38%), Positives = 112/183 (61%)
Query: 255 RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEF 314
RQTVM +AT V+R+A+ Y+ P V +GS V QK+ ++ E EK+ L+
Sbjct: 599 RQTVMFTATMPPAVERLARSYLRRPAVVYIGSAG-KPHERVEQKVFLMSESEKRKKLLAI 657
Query: 315 FDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYAR 374
+ + +++F+ +K ++ L +C+L+G QE RE AL ++ +G
Sbjct: 658 LEQGFDP--PIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKD 715
Query: 375 ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHA 434
I VATDVA RG+D+ D++ V+NYD +IE+Y+HR+GRTGRAGKSG +IT +T++D +
Sbjct: 716 ILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVF 775
Query: 435 HEI 437
+E+
Sbjct: 776 YEL 778
Score = 287 (106.1 bits), Expect = 1.8e-57, Sum P(4) = 1.8e-57
Identities = 59/160 (36%), Positives = 94/160 (58%)
Query: 775 RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEF 834
RQTVM +AT V+R+A+ Y+ P V +GS V QK+ ++ E EK+ L+
Sbjct: 599 RQTVMFTATMPPAVERLARSYLRRPAVVYIGSAG-KPHERVEQKVFLMSESEKRKKLLAI 657
Query: 835 FDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYAR 894
+ + +++F+ +K ++ L +C+L+G QE RE AL ++ +G
Sbjct: 658 LEQGFDP--PIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKD 715
Query: 895 ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
I VATDVA RG+D+ D++ V+NYD +IE+Y+HR+GRTG
Sbjct: 716 ILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 755
Score = 56 (24.8 bits), Expect = 1.8e-57, Sum P(4) = 1.8e-57
Identities = 26/121 (21%), Positives = 57/121 (47%)
Query: 255 RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEF 314
RQ + +K++ + ++Y+ +K T + + + + D +D +++
Sbjct: 233 RQKIREEKDKSKELHAIKERYL-GGIKKR------RRTRHLNDRKFVFEWDASEDTSIDY 285
Query: 315 FDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYAR 374
+ + +ER +V + +GR ++ + DL Q R+ YGDL ++ R LE+ AR
Sbjct: 286 -NPLYKERHQVQL-LGR-GFIAGI--DLKQQKREQSRFYGDLMEKRR--TLEEKEQEEAR 338
Query: 375 I 375
+
Sbjct: 339 L 339
Score = 45 (20.9 bits), Expect = 5.3e-22, Sum P(5) = 5.3e-22
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 419 SGESITLMTRKDWSHAHEIIPILEEGGHESYMI--WRRDSRIALHVI 463
S + + MT +DW E I +GG I W+ DS + H++
Sbjct: 357 SQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWK-DSSLPPHIL 402
Score = 40 (19.1 bits), Expect = 8.2e-20, Sum P(3) = 8.2e-20
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 510 DLGRHIDPEPTMEELMALSDRKERDKWAREPKIIKNVYKEDPE 552
DLGR + +P E +R ER+ E + + +E+ +
Sbjct: 199 DLGRKMLEDPQERERRERRERMERETNGNEDEEGRQKIREEKD 241
Score = 39 (18.8 bits), Expect = 1.8e-57, Sum P(4) = 1.8e-57
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 206 TPGRLNDFVSRASIDLK 222
+PGR DF SR D K
Sbjct: 108 SPGRGKDFKSRKDRDSK 124
Score = 39 (18.8 bits), Expect = 8.2e-56, Sum P(3) = 8.2e-56
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 509 IDLGRHIDPEPTMEELMALSDRKERDKWAREP-KIIKN 545
ID+G D + +E + + + + D+ A +P K++ N
Sbjct: 554 IDMGFEPDVQKILEHMPVSNQKPDTDE-AEDPEKMLAN 590
Score = 39 (18.8 bits), Expect = 2.9e-20, Sum P(2) = 2.9e-20
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 726 TPGRLNDFVSRASIDLK 742
+PGR DF SR D K
Sbjct: 108 SPGRGKDFKSRKDRDSK 124
>UNIPROTKB|E2RTL6 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005682 GO:GO:0003676
GO:GO:0071013 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE EMBL:AAEX03015077
RefSeq:XP_851051.1 ProteinModelPortal:E2RTL6
Ensembl:ENSCAFT00000013894 GeneID:477624 KEGG:cfa:477624
NextBio:20853071 Uniprot:E2RTL6
Length = 820
Score = 380 (138.8 bits), Expect = 1.9e-57, Sum P(4) = 1.9e-57
Identities = 95/255 (37%), Positives = 145/255 (56%)
Query: 521 MEELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDI---SVSVVT 577
ME+ L ++++ + AR K+ K K+ + + + ++++ ++ I S+ T
Sbjct: 324 MEKRRTLEEKEQEE--ARLRKLRKKEAKQRWDDRHWSQKKLDEMTDRDWRIFREDYSITT 381
Query: 578 SDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMI 637
G+I PNP+ S+K + P IL ++ + P+PIQ QA PI + D+I
Sbjct: 382 KGGKI--------PNPIRSWKDSSLP-PHILEVIDKCGYKEPTPIQRQAIPIGLQNRDII 432
Query: 638 GIAQTGTGKTFAFLLPALIHTHLQTTPISERA-----GPSVLVMAPTRELATQIEREVNK 692
G+A+TG+GKT AFL+P L+ + T P +R GP +++APTRELA QIE E K
Sbjct: 433 GVAETGSGKTAAFLIPLLVW--ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIK 490
Query: 693 IDYK-GLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDE 751
G++ V V GG E Q ++R GC I+IATPGRL D + + L ++VVLDE
Sbjct: 491 FGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDE 550
Query: 752 ADRMLDLGFEPQINK 766
ADRM+D+GFEP + K
Sbjct: 551 ADRMIDMGFEPDVQK 565
Score = 379 (138.5 bits), Expect = 2.4e-62, Sum P(2) = 2.4e-62
Identities = 95/255 (37%), Positives = 145/255 (56%)
Query: 1 MEELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDI---SVSVVT 57
ME+ L ++++ + AR K+ K K+ + + + ++++ ++ I S+ T
Sbjct: 324 MEKRRTLEEKEQEE--ARLRKLRKKEAKQRWDDRHWSQKKLDEMTDRDWRIFREDYSITT 381
Query: 58 SDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMI 117
G+I PNP+ S+K + P IL ++ + P+PIQ QA PI + D+I
Sbjct: 382 KGGKI--------PNPIRSWKDSSLP-PHILEVIDKCGYKEPTPIQRQAIPIGLQNRDII 432
Query: 118 GIAQTGTGKTFAFLLPALIHTHLQTTPISERA-----GPSVLVMAPTRELATQIEREVNK 172
G+A+TG+GKT AFL+P L+ + T P +R GP +++APTRELA QIE E K
Sbjct: 433 GVAETGSGKTAAFLIPLLVW--ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIK 490
Query: 173 IDYK-GLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDE 231
G++ V V GG E Q ++R GC I+IATPGRL D + + L ++VVLDE
Sbjct: 491 FGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDE 550
Query: 232 ADRMLDLGFEPQINK 246
ADRM+D+GFEP + K
Sbjct: 551 ADRMIDMGFEPDVQK 565
Score = 343 (125.8 bits), Expect = 2.4e-62, Sum P(2) = 2.4e-62
Identities = 70/183 (38%), Positives = 112/183 (61%)
Query: 255 RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEF 314
RQTVM +AT V+R+A+ Y+ P V +GS V QK+ ++ E EK+ L+
Sbjct: 600 RQTVMFTATMPPAVERLARSYLRRPAVVYIGSAG-KPHERVEQKVFLMSESEKRKKLLAI 658
Query: 315 FDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYAR 374
+ + +++F+ +K ++ L +C+L+G QE RE AL ++ +G
Sbjct: 659 LEQGFDP--PIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKD 716
Query: 375 ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHA 434
I VATDVA RG+D+ D++ V+NYD +IE+Y+HR+GRTGRAGKSG +IT +T++D +
Sbjct: 717 ILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVF 776
Query: 435 HEI 437
+E+
Sbjct: 777 YEL 779
Score = 287 (106.1 bits), Expect = 1.9e-57, Sum P(4) = 1.9e-57
Identities = 59/160 (36%), Positives = 94/160 (58%)
Query: 775 RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEF 834
RQTVM +AT V+R+A+ Y+ P V +GS V QK+ ++ E EK+ L+
Sbjct: 600 RQTVMFTATMPPAVERLARSYLRRPAVVYIGSAG-KPHERVEQKVFLMSESEKRKKLLAI 658
Query: 835 FDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYAR 894
+ + +++F+ +K ++ L +C+L+G QE RE AL ++ +G
Sbjct: 659 LEQGFDP--PIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKD 716
Query: 895 ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
I VATDVA RG+D+ D++ V+NYD +IE+Y+HR+GRTG
Sbjct: 717 ILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 756
Score = 56 (24.8 bits), Expect = 1.9e-57, Sum P(4) = 1.9e-57
Identities = 26/121 (21%), Positives = 57/121 (47%)
Query: 255 RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEF 314
RQ + +K++ + ++Y+ +K T + + + + D +D +++
Sbjct: 234 RQKIREEKDKSKELHAIKERYL-GGIKKR------RRTRHLNDRKFVFEWDASEDTSIDY 286
Query: 315 FDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYAR 374
+ + +ER +V + +GR ++ + DL Q R+ YGDL ++ R LE+ AR
Sbjct: 287 -NPLYKERHQVQL-LGR-GFIAGI--DLKQQKREQSRFYGDLMEKRR--TLEEKEQEEAR 339
Query: 375 I 375
+
Sbjct: 340 L 340
Score = 45 (20.9 bits), Expect = 5.4e-22, Sum P(5) = 5.4e-22
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 419 SGESITLMTRKDWSHAHEIIPILEEGGHESYMI--WRRDSRIALHVI 463
S + + MT +DW E I +GG I W+ DS + H++
Sbjct: 358 SQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWK-DSSLPPHIL 403
Score = 40 (19.1 bits), Expect = 8.3e-20, Sum P(3) = 8.3e-20
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 510 DLGRHIDPEPTMEELMALSDRKERDKWAREPKIIKNVYKEDPE 552
DLGR + +P E +R ER+ E + + +E+ +
Sbjct: 200 DLGRKMLEDPQERERRERRERMERETNGNEDEEGRQKIREEKD 242
Score = 39 (18.8 bits), Expect = 1.9e-57, Sum P(4) = 1.9e-57
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 206 TPGRLNDFVSRASIDLK 222
+PGR DF SR D K
Sbjct: 109 SPGRGKDFKSRKDRDSK 125
Score = 39 (18.8 bits), Expect = 8.3e-56, Sum P(3) = 8.3e-56
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 509 IDLGRHIDPEPTMEELMALSDRKERDKWAREP-KIIKN 545
ID+G D + +E + + + + D+ A +P K++ N
Sbjct: 555 IDMGFEPDVQKILEHMPVSNQKPDTDE-AEDPEKMLAN 591
Score = 39 (18.8 bits), Expect = 2.9e-20, Sum P(2) = 2.9e-20
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 726 TPGRLNDFVSRASIDLK 742
+PGR DF SR D K
Sbjct: 109 SPGRGKDFKSRKDRDSK 125
>UNIPROTKB|Q9BUQ8 [details] [associations]
symbol:DDX23 "Probable ATP-dependent RNA helicase DDX23"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=IC]
[GO:0005682 "U5 snRNP" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:AF026402 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0005682 GO:GO:0003676 EMBL:CH471111 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000354
KO:K12858 EMBL:AK312379 EMBL:BC002366 IPI:IPI00006725
RefSeq:NP_004809.2 UniGene:Hs.130098 ProteinModelPortal:Q9BUQ8
SMR:Q9BUQ8 DIP:DIP-34974N IntAct:Q9BUQ8 MINT:MINT-1572793
STRING:Q9BUQ8 PhosphoSite:Q9BUQ8 DMDM:160385708 PaxDb:Q9BUQ8
PRIDE:Q9BUQ8 DNASU:9416 Ensembl:ENST00000308025 GeneID:9416
KEGG:hsa:9416 UCSC:uc001rsm.3 CTD:9416 GeneCards:GC12M049223
HGNC:HGNC:17347 HPA:HPA038680 MIM:612172 neXtProt:NX_Q9BUQ8
PharmGKB:PA134934941 HOGENOM:HOG000268796 HOVERGEN:HBG102054
InParanoid:Q9BUQ8 OMA:PIRNWKE OrthoDB:EOG46T312 PhylomeDB:Q9BUQ8
GenomeRNAi:9416 NextBio:35278 ArrayExpress:Q9BUQ8 Bgee:Q9BUQ8
CleanEx:HS_DDX23 Genevestigator:Q9BUQ8 GermOnline:ENSG00000174243
Uniprot:Q9BUQ8
Length = 820
Score = 380 (138.8 bits), Expect = 1.9e-57, Sum P(4) = 1.9e-57
Identities = 95/255 (37%), Positives = 145/255 (56%)
Query: 521 MEELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDI---SVSVVT 577
ME+ L ++++ + AR K+ K K+ + + + ++++ ++ I S+ T
Sbjct: 324 MEKRRTLEEKEQEE--ARLRKLRKKEAKQRWDDRHWSQKKLDEMTDRDWRIFREDYSITT 381
Query: 578 SDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMI 637
G+I PNP+ S+K + P IL ++ + P+PIQ QA PI + D+I
Sbjct: 382 KGGKI--------PNPIRSWKDSSLP-PHILEVIDKCGYKEPTPIQRQAIPIGLQNRDII 432
Query: 638 GIAQTGTGKTFAFLLPALIHTHLQTTPISERA-----GPSVLVMAPTRELATQIEREVNK 692
G+A+TG+GKT AFL+P L+ + T P +R GP +++APTRELA QIE E K
Sbjct: 433 GVAETGSGKTAAFLIPLLVW--ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIK 490
Query: 693 IDYK-GLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDE 751
G++ V V GG E Q ++R GC I+IATPGRL D + + L ++VVLDE
Sbjct: 491 FGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDE 550
Query: 752 ADRMLDLGFEPQINK 766
ADRM+D+GFEP + K
Sbjct: 551 ADRMIDMGFEPDVQK 565
Score = 379 (138.5 bits), Expect = 2.4e-62, Sum P(2) = 2.4e-62
Identities = 95/255 (37%), Positives = 145/255 (56%)
Query: 1 MEELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDI---SVSVVT 57
ME+ L ++++ + AR K+ K K+ + + + ++++ ++ I S+ T
Sbjct: 324 MEKRRTLEEKEQEE--ARLRKLRKKEAKQRWDDRHWSQKKLDEMTDRDWRIFREDYSITT 381
Query: 58 SDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMI 117
G+I PNP+ S+K + P IL ++ + P+PIQ QA PI + D+I
Sbjct: 382 KGGKI--------PNPIRSWKDSSLP-PHILEVIDKCGYKEPTPIQRQAIPIGLQNRDII 432
Query: 118 GIAQTGTGKTFAFLLPALIHTHLQTTPISERA-----GPSVLVMAPTRELATQIEREVNK 172
G+A+TG+GKT AFL+P L+ + T P +R GP +++APTRELA QIE E K
Sbjct: 433 GVAETGSGKTAAFLIPLLVW--ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIK 490
Query: 173 IDYK-GLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDE 231
G++ V V GG E Q ++R GC I+IATPGRL D + + L ++VVLDE
Sbjct: 491 FGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDE 550
Query: 232 ADRMLDLGFEPQINK 246
ADRM+D+GFEP + K
Sbjct: 551 ADRMIDMGFEPDVQK 565
Score = 343 (125.8 bits), Expect = 2.4e-62, Sum P(2) = 2.4e-62
Identities = 70/183 (38%), Positives = 112/183 (61%)
Query: 255 RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEF 314
RQTVM +AT V+R+A+ Y+ P V +GS V QK+ ++ E EK+ L+
Sbjct: 600 RQTVMFTATMPPAVERLARSYLRRPAVVYIGSAG-KPHERVEQKVFLMSESEKRKKLLAI 658
Query: 315 FDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYAR 374
+ + +++F+ +K ++ L +C+L+G QE RE AL ++ +G
Sbjct: 659 LEQGFDP--PIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKD 716
Query: 375 ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHA 434
I VATDVA RG+D+ D++ V+NYD +IE+Y+HR+GRTGRAGKSG +IT +T++D +
Sbjct: 717 ILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVF 776
Query: 435 HEI 437
+E+
Sbjct: 777 YEL 779
Score = 287 (106.1 bits), Expect = 1.9e-57, Sum P(4) = 1.9e-57
Identities = 59/160 (36%), Positives = 94/160 (58%)
Query: 775 RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEF 834
RQTVM +AT V+R+A+ Y+ P V +GS V QK+ ++ E EK+ L+
Sbjct: 600 RQTVMFTATMPPAVERLARSYLRRPAVVYIGSAG-KPHERVEQKVFLMSESEKRKKLLAI 658
Query: 835 FDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYAR 894
+ + +++F+ +K ++ L +C+L+G QE RE AL ++ +G
Sbjct: 659 LEQGFDP--PIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKD 716
Query: 895 ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
I VATDVA RG+D+ D++ V+NYD +IE+Y+HR+GRTG
Sbjct: 717 ILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 756
Score = 56 (24.8 bits), Expect = 1.9e-57, Sum P(4) = 1.9e-57
Identities = 26/121 (21%), Positives = 57/121 (47%)
Query: 255 RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEF 314
RQ + +K++ + ++Y+ +K T + + + + D +D +++
Sbjct: 234 RQKIREEKDKSKELHAIKERYL-GGIKKR------RRTRHLNDRKFVFEWDASEDTSIDY 286
Query: 315 FDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYAR 374
+ + +ER +V + +GR ++ + DL Q R+ YGDL ++ R LE+ AR
Sbjct: 287 -NPLYKERHQVQL-LGR-GFIAGI--DLKQQKREQSRFYGDLMEKRR--TLEEKEQEEAR 339
Query: 375 I 375
+
Sbjct: 340 L 340
Score = 45 (20.9 bits), Expect = 5.4e-22, Sum P(5) = 5.4e-22
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 419 SGESITLMTRKDWSHAHEIIPILEEGGHESYMI--WRRDSRIALHVI 463
S + + MT +DW E I +GG I W+ DS + H++
Sbjct: 358 SQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWK-DSSLPPHIL 403
Score = 40 (19.1 bits), Expect = 8.3e-20, Sum P(3) = 8.3e-20
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 510 DLGRHIDPEPTMEELMALSDRKERDKWAREPKIIKNVYKEDPE 552
DLGR + +P E +R ER+ E + + +E+ +
Sbjct: 200 DLGRKMLEDPQERERRERRERMERETNGNEDEEGRQKIREEKD 242
Score = 39 (18.8 bits), Expect = 1.9e-57, Sum P(4) = 1.9e-57
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 206 TPGRLNDFVSRASIDLK 222
+PGR DF SR D K
Sbjct: 109 SPGRGKDFKSRKDRDSK 125
Score = 39 (18.8 bits), Expect = 8.3e-56, Sum P(3) = 8.3e-56
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 509 IDLGRHIDPEPTMEELMALSDRKERDKWAREP-KIIKN 545
ID+G D + +E + + + + D+ A +P K++ N
Sbjct: 555 IDMGFEPDVQKILEHMPVSNQKPDTDE-AEDPEKMLAN 591
Score = 39 (18.8 bits), Expect = 2.9e-20, Sum P(2) = 2.9e-20
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 726 TPGRLNDFVSRASIDLK 742
+PGR DF SR D K
Sbjct: 109 SPGRGKDFKSRKDRDSK 125
>UNIPROTKB|A6QLB2 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 HOGENOM:HOG000268796
HOVERGEN:HBG102054 OMA:PIRNWKE OrthoDB:EOG46T312 EMBL:DAAA02012954
EMBL:BC147902 IPI:IPI00866828 RefSeq:NP_001095672.1
UniGene:Bt.14027 STRING:A6QLB2 Ensembl:ENSBTAT00000029071
GeneID:537395 KEGG:bta:537395 InParanoid:A6QLB2 NextBio:20877127
Uniprot:A6QLB2
Length = 820
Score = 380 (138.8 bits), Expect = 1.0e-57, Sum P(3) = 1.0e-57
Identities = 95/255 (37%), Positives = 145/255 (56%)
Query: 521 MEELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDI---SVSVVT 577
ME+ L ++++ + AR K+ K K+ + + + ++++ ++ I S+ T
Sbjct: 324 MEKRRTLEEKEQEE--ARLRKLRKKEAKQRWDDRHWSQKKLDEMTDRDWRIFREDYSITT 381
Query: 578 SDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMI 637
G+I PNP+ S+K + P IL ++ + P+PIQ QA PI + D+I
Sbjct: 382 KGGKI--------PNPIRSWKDSSLP-PHILEVIDKCGYKEPTPIQRQAIPIGLQNRDII 432
Query: 638 GIAQTGTGKTFAFLLPALIHTHLQTTPISERA-----GPSVLVMAPTRELATQIEREVNK 692
G+A+TG+GKT AFL+P L+ + T P +R GP +++APTRELA QIE E K
Sbjct: 433 GVAETGSGKTAAFLIPLLVW--ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIK 490
Query: 693 IDYK-GLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDE 751
G++ V V GG E Q ++R GC I+IATPGRL D + + L ++VVLDE
Sbjct: 491 FGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDE 550
Query: 752 ADRMLDLGFEPQINK 766
ADRM+D+GFEP + K
Sbjct: 551 ADRMIDMGFEPDVQK 565
Score = 379 (138.5 bits), Expect = 2.4e-62, Sum P(2) = 2.4e-62
Identities = 95/255 (37%), Positives = 145/255 (56%)
Query: 1 MEELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDI---SVSVVT 57
ME+ L ++++ + AR K+ K K+ + + + ++++ ++ I S+ T
Sbjct: 324 MEKRRTLEEKEQEE--ARLRKLRKKEAKQRWDDRHWSQKKLDEMTDRDWRIFREDYSITT 381
Query: 58 SDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMI 117
G+I PNP+ S+K + P IL ++ + P+PIQ QA PI + D+I
Sbjct: 382 KGGKI--------PNPIRSWKDSSLP-PHILEVIDKCGYKEPTPIQRQAIPIGLQNRDII 432
Query: 118 GIAQTGTGKTFAFLLPALIHTHLQTTPISERA-----GPSVLVMAPTRELATQIEREVNK 172
G+A+TG+GKT AFL+P L+ + T P +R GP +++APTRELA QIE E K
Sbjct: 433 GVAETGSGKTAAFLIPLLVW--ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIK 490
Query: 173 IDYK-GLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDE 231
G++ V V GG E Q ++R GC I+IATPGRL D + + L ++VVLDE
Sbjct: 491 FGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDE 550
Query: 232 ADRMLDLGFEPQINK 246
ADRM+D+GFEP + K
Sbjct: 551 ADRMIDMGFEPDVQK 565
Score = 343 (125.8 bits), Expect = 2.4e-62, Sum P(2) = 2.4e-62
Identities = 70/183 (38%), Positives = 112/183 (61%)
Query: 255 RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEF 314
RQTVM +AT V+R+A+ Y+ P V +GS V QK+ ++ E EK+ L+
Sbjct: 600 RQTVMFTATMPPAVERLARSYLRRPAVVYIGSAG-KPHERVEQKVFLMSESEKRKKLLAI 658
Query: 315 FDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYAR 374
+ + +++F+ +K ++ L +C+L+G QE RE AL ++ +G
Sbjct: 659 LEQGFDP--PIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKD 716
Query: 375 ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHA 434
I VATDVA RG+D+ D++ V+NYD +IE+Y+HR+GRTGRAGKSG +IT +T++D +
Sbjct: 717 ILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVF 776
Query: 435 HEI 437
+E+
Sbjct: 777 YEL 779
Score = 287 (106.1 bits), Expect = 1.0e-57, Sum P(3) = 1.0e-57
Identities = 59/160 (36%), Positives = 94/160 (58%)
Query: 775 RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEF 834
RQTVM +AT V+R+A+ Y+ P V +GS V QK+ ++ E EK+ L+
Sbjct: 600 RQTVMFTATMPPAVERLARSYLRRPAVVYIGSAG-KPHERVEQKVFLMSESEKRKKLLAI 658
Query: 835 FDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYAR 894
+ + +++F+ +K ++ L +C+L+G QE RE AL ++ +G
Sbjct: 659 LEQGFDP--PIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKD 716
Query: 895 ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
I VATDVA RG+D+ D++ V+NYD +IE+Y+HR+GRTG
Sbjct: 717 ILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 756
Score = 56 (24.8 bits), Expect = 1.0e-57, Sum P(3) = 1.0e-57
Identities = 26/121 (21%), Positives = 57/121 (47%)
Query: 255 RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEF 314
RQ + +K++ + ++Y+ +K T + + + + D +D +++
Sbjct: 234 RQKIREEKDKSKELHAIKERYL-GGIKKR------RRTRHLNDRKFVFEWDASEDTSIDY 286
Query: 315 FDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYAR 374
+ + +ER +V + +GR ++ + DL Q R+ YGDL ++ R LE+ AR
Sbjct: 287 -NPLYKERHQVQL-LGR-GFIAGI--DLKQQKREQSRFYGDLMEKRR--TLEEKEQEEAR 339
Query: 375 I 375
+
Sbjct: 340 L 340
Score = 45 (20.9 bits), Expect = 7.1e-22, Sum P(4) = 7.1e-22
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 419 SGESITLMTRKDWSHAHEIIPILEEGGHESYMI--WRRDSRIALHVI 463
S + + MT +DW E I +GG I W+ DS + H++
Sbjct: 358 SQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWK-DSSLPPHIL 403
Score = 40 (19.1 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 510 DLGRHIDPEPTMEELMALSDRKERDKWAREPKIIKNVYKEDPE 552
DLGR + +P E +R ER+ E + + +E+ +
Sbjct: 200 DLGRKMLEDPQERERRERRERMERETNGNEDEEGRQKIREEKD 242
Score = 39 (18.8 bits), Expect = 8.3e-56, Sum P(3) = 8.3e-56
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 509 IDLGRHIDPEPTMEELMALSDRKERDKWAREP-KIIKN 545
ID+G D + +E + + + + D+ A +P K++ N
Sbjct: 555 IDMGFEPDVQKILEHMPVSNQKPDTDE-AEDPEKMLAN 591
>UNIPROTKB|Q3MSQ8 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:45623 "Pelophylax lessonae" [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0030154 GO:GO:0048477 GO:GO:0007283 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071546
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AJ841700
ProteinModelPortal:Q3MSQ8 SMR:Q3MSQ8 Uniprot:Q3MSQ8
Length = 724
Score = 637 (229.3 bits), Expect = 2.9e-62, P = 2.9e-62
Identities = 156/452 (34%), Positives = 252/452 (55%)
Query: 28 KEDPEVANMTP----EQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQH 83
++ P V + P E+ + F K+ ++ D + E +P + +F++A
Sbjct: 237 EQGPRVTYIPPPPPAEESDIF--KHYQTGINFDKYDDIVVEVSGSDVPPAILTFEEA-NL 293
Query: 84 YPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHL--- 140
+ + + + +PIQ + PI+++G D++ AQTG+GKT AFLLP L H +
Sbjct: 294 CDSLAKNVCKSGYVKLTPIQKHSIPIIVAGRDLMACAQTGSGKTAAFLLPILAHLMVKGV 353
Query: 141 QTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGGKEIEPQLEKIREG 199
+++ P +++APTREL QI + K Y ++ V +YGG ++ L++I EG
Sbjct: 354 ESSAFQTLKEPEAIIVAPTRELINQIYLDARKFSYGTCVRPVVIYGGTQMFHSLKQISEG 413
Query: 200 CHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQIN---KTS-IYINPNR 255
C+IL ATPGRL D + + I L + ++VLDEADRMLD+GF I K+S + R
Sbjct: 414 CNILCATPGRLLDVIRKEKIGLTKLRYLVLDEADRMLDMGFREDIENLLKSSGMPSKEER 473
Query: 256 QTVMTSATWNKDVQRVAKKYMVNP--VKVNVGSLDLAATHTVTQKIIILDEDEKKDWLME 313
QT+M SAT+ +Q +A++ ++ P + V VG + A V Q +I +DE KKD LME
Sbjct: 474 QTLMFSATFPSSIQSLARE-ILKPDYLFVVVGQVG-GACSDVEQMVIEVDEFGKKDKLME 531
Query: 314 FFDNMDEERDKVMVFMGRKASVSAMSSDLACQYR-KSCSLYGDLSQEDREIALEDITSGY 372
+ ER MVF+ K +++ L CQ + S S++GD Q++RE AL D +G
Sbjct: 532 ILQEIGSER--TMVFVKTKKKADFIATFL-CQEKVPSTSIHGDREQKERETALRDFRTGQ 588
Query: 373 ARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRK--- 429
+ VAT VA+RGLD+ ++++VIN+D P I+EYVHR+GRTGR G +G +I+ ++
Sbjct: 589 CPVIVATSVAARGLDIENVSYVINFDIPDDIDEYVHRIGRTGRCGNTGRAISFFDKRGDD 648
Query: 430 DWSHAHEIIPILEEGGHESYMIWRRDSRIALH 461
+ A ++ +L + H+ W + + H
Sbjct: 649 EQRIARSLVKVLSDA-HQEVPAWLEEVAFSAH 679
Score = 598 (215.6 bits), Expect = 8.9e-58, P = 8.9e-58
Identities = 147/402 (36%), Positives = 230/402 (57%)
Query: 548 KEDPEVANMTP----EQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQH 603
++ P V + P E+ + F K+ ++ D + E +P + +F++A
Sbjct: 237 EQGPRVTYIPPPPPAEESDIF--KHYQTGINFDKYDDIVVEVSGSDVPPAILTFEEA-NL 293
Query: 604 YPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHL--- 660
+ + + + +PIQ + PI+++G D++ AQTG+GKT AFLLP L H +
Sbjct: 294 CDSLAKNVCKSGYVKLTPIQKHSIPIIVAGRDLMACAQTGSGKTAAFLLPILAHLMVKGV 353
Query: 661 QTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGGKELEPQLEKIREG 719
+++ P +++APTREL QI + K Y ++ V +YGG ++ L++I EG
Sbjct: 354 ESSAFQTLKEPEAIIVAPTRELINQIYLDARKFSYGTCVRPVVIYGGTQMFHSLKQISEG 413
Query: 720 CHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQIN---KTS-IYINPNR 775
C+IL ATPGRL D + + I L + ++VLDEADRMLD+GF I K+S + R
Sbjct: 414 CNILCATPGRLLDVIRKEKIGLTKLRYLVLDEADRMLDMGFREDIENLLKSSGMPSKEER 473
Query: 776 QTVMTSATWNKDVQRVAKKYMVNP--VKVNVGSLDLAATHTVTQKIIILDEDEKKDWLME 833
QT+M SAT+ +Q +A++ ++ P + V VG + A V Q +I +DE KKD LME
Sbjct: 474 QTLMFSATFPSSIQSLARE-ILKPDYLFVVVGQVG-GACSDVEQMVIEVDEFGKKDKLME 531
Query: 834 FFDNMDEERDKVMVFMGRKASVSAMSSDLACQYR-KSCSLYGDLSQEDREIALEDITSGY 892
+ ER MVF+ K +++ L CQ + S S++GD Q++RE AL D +G
Sbjct: 532 ILQEIGSER--TMVFVKTKKKADFIATFL-CQEKVPSTSIHGDREQKERETALRDFRTGQ 588
Query: 893 ARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
+ VAT VA+RGLD+ ++++VIN+D P I+EYVHR+GRTG
Sbjct: 589 CPVIVATSVAARGLDIENVSYVINFDIPDDIDEYVHRIGRTG 630
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 637 (229.3 bits), Expect = 2.9e-62, P = 2.9e-62
Identities = 130/353 (36%), Positives = 214/353 (60%)
Query: 79 QAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHT 138
++F PEILR + + + +PIQ QA P + G D++ AQTGTGKT AF LP ++
Sbjct: 4 ESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALP-ILQK 62
Query: 139 HLQTTPISERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIR 197
++ + ++ VL++ PTRELA Q+ V Y + +YGG ++E Q +K++
Sbjct: 63 MVENPSETLKSNTRVLILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVKVETQAQKLK 122
Query: 198 EGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQT 257
G I++ATPGRL + ++ ++ L +V F+VLDEADRMLD+GF I K +N RQ
Sbjct: 123 RGADIIVATPGRLLEHLTACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQN 182
Query: 258 VMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDN 317
++ SAT++ V+++A + M+ P ++ + A TV+Q + +++ K++ L E
Sbjct: 183 LLFSATFSSAVKKLANEMMIKPQVISADKQNTTAD-TVSQVVYPVEQRRKRELLSELIGK 241
Query: 318 MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICV 377
+ ++ V+VF + + + +L S ++G+ +Q R AL + SG R+ V
Sbjct: 242 KNWQQ--VLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRVLV 299
Query: 378 ATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430
AT+VA+RGLD+P L +V+N+D P E+YVHR+GRTGRAGKSG +I+ ++R++
Sbjct: 300 ATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREE 352
Score = 591 (213.1 bits), Expect = 5.4e-57, P = 5.4e-57
Identities = 122/337 (36%), Positives = 200/337 (59%)
Query: 599 QAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHT 658
++F PEILR + + + +PIQ QA P + G D++ AQTGTGKT AF LP ++
Sbjct: 4 ESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALP-ILQK 62
Query: 659 HLQTTPISERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIR 717
++ + ++ VL++ PTRELA Q+ V Y + +YGG ++E Q +K++
Sbjct: 63 MVENPSETLKSNTRVLILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVKVETQAQKLK 122
Query: 718 EGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQT 777
G I++ATPGRL + ++ ++ L +V F+VLDEADRMLD+GF I K +N RQ
Sbjct: 123 RGADIIVATPGRLLEHLTACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQN 182
Query: 778 VMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDN 837
++ SAT++ V+++A + M+ P ++ + A TV+Q + +++ K++ L E
Sbjct: 183 LLFSATFSSAVKKLANEMMIKPQVISADKQNTTAD-TVSQVVYPVEQRRKRELLSELIGK 241
Query: 838 MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICV 897
+ ++ V+VF + + + +L S ++G+ +Q R AL + SG R+ V
Sbjct: 242 KNWQQ--VLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRVLV 299
Query: 898 ATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
AT+VA+RGLD+P L +V+N+D P E+YVHR+GRTG
Sbjct: 300 ATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTG 336
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 621 (223.7 bits), Expect = 3.1e-62, Sum P(2) = 3.1e-62
Identities = 137/360 (38%), Positives = 207/360 (57%)
Query: 86 EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI 145
E+LR + + P+P+Q QA P+++ D++ AQTGTGKT F LP L + P+
Sbjct: 20 ELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFVSRPPL 79
Query: 146 SERAGPSV--LVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHI 202
A P + L++ PTRELA Q+ V Y LKA V+GG I+PQ+ +R G I
Sbjct: 80 QRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQINHLRRGVDI 139
Query: 203 LIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSA 262
L+ATPGRL D V++ ++L V F VLDEADRMLD+GF P I + + +RQ ++ SA
Sbjct: 140 LVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPESRQNLLFSA 199
Query: 263 TWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEER 322
T++K+++ + K + +P + V + AA +T + +D K++ L+ F R
Sbjct: 200 TFSKEIKELTDKLLHSPALIEVARRNTAAAR-ITHVVHPVDRQRKRE-LLSFMIGSKNWR 257
Query: 323 DKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVA 382
+V+VF K + +S L S +++G+ SQ R AL G R+ VATDVA
Sbjct: 258 -QVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIRVLVATDVA 316
Query: 383 SRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILE 442
+RGLD+ L HVIN++ P ++YVHRVGRTGRA G +I+L++ + +I +L+
Sbjct: 317 ARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLLRDIEKLLQ 376
Score = 593 (213.8 bits), Expect = 3.2e-57, P = 3.2e-57
Identities = 129/332 (38%), Positives = 192/332 (57%)
Query: 606 EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI 665
E+LR + + P+P+Q QA P+++ D++ AQTGTGKT F LP L + P+
Sbjct: 20 ELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFVSRPPL 79
Query: 666 SERAGPSV--LVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHI 722
A P + L++ PTRELA Q+ V Y LKA V+GG ++PQ+ +R G I
Sbjct: 80 QRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQINHLRRGVDI 139
Query: 723 LIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSA 782
L+ATPGRL D V++ ++L V F VLDEADRMLD+GF P I + + +RQ ++ SA
Sbjct: 140 LVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPESRQNLLFSA 199
Query: 783 TWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEER 842
T++K+++ + K + +P + V + AA +T + +D K++ L+ F R
Sbjct: 200 TFSKEIKELTDKLLHSPALIEVARRNTAAAR-ITHVVHPVDRQRKRE-LLSFMIGSKNWR 257
Query: 843 DKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVA 902
+V+VF K + +S L S +++G+ SQ R AL G R+ VATDVA
Sbjct: 258 -QVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIRVLVATDVA 316
Query: 903 SRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
+RGLD+ L HVIN++ P ++YVHRVGRTG
Sbjct: 317 ARGLDIDKLPHVINFELPDAAKDYVHRVGRTG 348
Score = 38 (18.4 bits), Expect = 3.1e-62, Sum P(2) = 3.1e-62
Identities = 13/60 (21%), Positives = 29/60 (48%)
Query: 565 RKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQA 624
R N+ +++S+V+ D + ++ + Q+ + E++ E FT +P+QA
Sbjct: 349 RASNDGVAISLVSGD-------EVRLLRDIEKLLQS-KMPQEVIPGYEPSPFTKAAPVQA 400
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 621 (223.7 bits), Expect = 3.1e-62, Sum P(2) = 3.1e-62
Identities = 137/360 (38%), Positives = 207/360 (57%)
Query: 86 EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI 145
E+LR + + P+P+Q QA P+++ D++ AQTGTGKT F LP L + P+
Sbjct: 20 ELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFVSRPPL 79
Query: 146 SERAGPSV--LVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHI 202
A P + L++ PTRELA Q+ V Y LKA V+GG I+PQ+ +R G I
Sbjct: 80 QRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQINHLRRGVDI 139
Query: 203 LIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSA 262
L+ATPGRL D V++ ++L V F VLDEADRMLD+GF P I + + +RQ ++ SA
Sbjct: 140 LVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPESRQNLLFSA 199
Query: 263 TWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEER 322
T++K+++ + K + +P + V + AA +T + +D K++ L+ F R
Sbjct: 200 TFSKEIKELTDKLLHSPALIEVARRNTAAAR-ITHVVHPVDRQRKRE-LLSFMIGSKNWR 257
Query: 323 DKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVA 382
+V+VF K + +S L S +++G+ SQ R AL G R+ VATDVA
Sbjct: 258 -QVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIRVLVATDVA 316
Query: 383 SRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILE 442
+RGLD+ L HVIN++ P ++YVHRVGRTGRA G +I+L++ + +I +L+
Sbjct: 317 ARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLLRDIEKLLQ 376
Score = 593 (213.8 bits), Expect = 3.2e-57, P = 3.2e-57
Identities = 129/332 (38%), Positives = 192/332 (57%)
Query: 606 EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI 665
E+LR + + P+P+Q QA P+++ D++ AQTGTGKT F LP L + P+
Sbjct: 20 ELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFVSRPPL 79
Query: 666 SERAGPSV--LVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHI 722
A P + L++ PTRELA Q+ V Y LKA V+GG ++PQ+ +R G I
Sbjct: 80 QRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQINHLRRGVDI 139
Query: 723 LIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSA 782
L+ATPGRL D V++ ++L V F VLDEADRMLD+GF P I + + +RQ ++ SA
Sbjct: 140 LVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPESRQNLLFSA 199
Query: 783 TWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEER 842
T++K+++ + K + +P + V + AA +T + +D K++ L+ F R
Sbjct: 200 TFSKEIKELTDKLLHSPALIEVARRNTAAAR-ITHVVHPVDRQRKRE-LLSFMIGSKNWR 257
Query: 843 DKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVA 902
+V+VF K + +S L S +++G+ SQ R AL G R+ VATDVA
Sbjct: 258 -QVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIRVLVATDVA 316
Query: 903 SRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
+RGLD+ L HVIN++ P ++YVHRVGRTG
Sbjct: 317 ARGLDIDKLPHVINFELPDAAKDYVHRVGRTG 348
Score = 38 (18.4 bits), Expect = 3.1e-62, Sum P(2) = 3.1e-62
Identities = 13/60 (21%), Positives = 29/60 (48%)
Query: 565 RKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQA 624
R N+ +++S+V+ D + ++ + Q+ + E++ E FT +P+QA
Sbjct: 349 RASNDGVAISLVSGD-------EVRLLRDIEKLLQS-KMPQEVIPGYEPSPFTKAAPVQA 400
>UNIPROTKB|Q90ZF6 [details] [associations]
symbol:olvas "VASA" species:8090 "Oryzias latipes"
[GO:0043186 "P granule" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 HSSP:Q58083 HOVERGEN:HBG015893 EMBL:AB063484
RefSeq:NP_001098146.1 UniGene:Ola.181 ProteinModelPortal:Q90ZF6
SMR:Q90ZF6 GeneID:100049226 CTD:100049226 Uniprot:Q90ZF6
Length = 617
Score = 636 (228.9 bits), Expect = 3.7e-62, P = 3.7e-62
Identities = 147/403 (36%), Positives = 229/403 (56%)
Query: 70 IPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 129
+P + +F++A + + + + P+P+Q PI+ +G D++ AQTG+GKT A
Sbjct: 176 LPAAIMTFEEA-KLCESLENNISRSGYVKPTPVQKYGLPIISAGRDLMACAQTGSGKTAA 234
Query: 130 FLLPAL---IHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYG 185
FLLP L + + + SE P +++APTREL QI +E K + ++ V VYG
Sbjct: 235 FLLPILQQLMADGVAASRFSEIQEPEAVIVAPTRELINQIYQEARKFSFGTCVRPVVVYG 294
Query: 186 GKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQIN 245
G Q+ +I +GC++L TPGRL D + R + L V +VLDEADRMLD+GFEP +
Sbjct: 295 GVNTGYQMREIEKGCNVLCGTPGRLLDMIGRGKVGLSKVRHLVLDEADRMLDMGFEPDMR 354
Query: 246 KT----SIYINPNRQTVMTSATWNKDVQRVAKKYM-VNPVKVNVGSLDLAATHTVTQKII 300
+ + RQT+M SAT+ +D+QR+A ++ V+ + V VG + A T V Q +
Sbjct: 355 RLVGSPGMPSKEERQTLMFSATFPEDIQRLAADFLKVDYLFVAVGVVGGACTD-VEQTFL 413
Query: 301 ILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYR-KSCSLYGDLSQE 359
+ + K++ L++ + ER MVF+ K +++ L CQ + + S++GD Q
Sbjct: 414 QVTKFNKREQLLDLLRTIGSER--TMVFVETKRQADFIAAFL-CQEKVPTTSIHGDREQR 470
Query: 360 DREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKS 419
+RE AL D SG + VAT VASRGLD+PD+ HV+N+D P+ I++YVHR+GRTGR G +
Sbjct: 471 EREKALADFRSGKCPVLVATSVASRGLDIPDVQHVVNFDLPNTIDDYVHRIGRTGRCGNT 530
Query: 420 GESITLMTRK-DWSHAHEIIPILEEGGHESYMIWRRDSRIALH 461
G +++ D A ++ IL + E W +S H
Sbjct: 531 GRAVSFYDPDVDSQLARSLVGILAKAQQE-VPSWLEESAFGAH 572
Score = 602 (217.0 bits), Expect = 3.1e-58, P = 3.1e-58
Identities = 136/355 (38%), Positives = 210/355 (59%)
Query: 590 IPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 649
+P + +F++A + + + + P+P+Q PI+ +G D++ AQTG+GKT A
Sbjct: 176 LPAAIMTFEEA-KLCESLENNISRSGYVKPTPVQKYGLPIISAGRDLMACAQTGSGKTAA 234
Query: 650 FLLPAL---IHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYG 705
FLLP L + + + SE P +++APTREL QI +E K + ++ V VYG
Sbjct: 235 FLLPILQQLMADGVAASRFSEIQEPEAVIVAPTRELINQIYQEARKFSFGTCVRPVVVYG 294
Query: 706 GKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQIN 765
G Q+ +I +GC++L TPGRL D + R + L V +VLDEADRMLD+GFEP +
Sbjct: 295 GVNTGYQMREIEKGCNVLCGTPGRLLDMIGRGKVGLSKVRHLVLDEADRMLDMGFEPDMR 354
Query: 766 KT----SIYINPNRQTVMTSATWNKDVQRVAKKYM-VNPVKVNVGSLDLAATHTVTQKII 820
+ + RQT+M SAT+ +D+QR+A ++ V+ + V VG + A T V Q +
Sbjct: 355 RLVGSPGMPSKEERQTLMFSATFPEDIQRLAADFLKVDYLFVAVGVVGGACTD-VEQTFL 413
Query: 821 ILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYR-KSCSLYGDLSQE 879
+ + K++ L++ + ER MVF+ K +++ L CQ + + S++GD Q
Sbjct: 414 QVTKFNKREQLLDLLRTIGSER--TMVFVETKRQADFIAAFL-CQEKVPTTSIHGDREQR 470
Query: 880 DREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
+RE AL D SG + VAT VASRGLD+PD+ HV+N+D P+ I++YVHR+GRTG
Sbjct: 471 EREKALADFRSGKCPVLVATSVASRGLDIPDVQHVVNFDLPNTIDDYVHRIGRTG 525
>UNIPROTKB|Q4K8U0 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A" species:220664
"Pseudomonas protegens Pf-5" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006950
GO:GO:0006355 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
OMA:LPQGMPK RefSeq:YP_261343.1 ProteinModelPortal:Q4K8U0
GeneID:3477377 KEGG:pfl:PFL_4251 PATRIC:19877913
ProtClustDB:CLSK867560 BioCyc:PFLU220664:GIX8-4286-MONOMER
Uniprot:Q4K8U0
Length = 557
Score = 616 (221.9 bits), Expect = 6.0e-62, Sum P(2) = 6.0e-62
Identities = 140/353 (39%), Positives = 210/353 (59%)
Query: 80 AFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH 139
A + +P I+ + + PS IQ Q+ PI+++GHDMIG AQTGTGKT AF LP ++H
Sbjct: 10 ALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALP-ILH-- 66
Query: 140 LQTTPISERAGPSVLVMAPTRELATQIER--EVNKIDYKGLKAVCVYGGKEIEPQLEKIR 197
+ P S+R P L++APTRELA Q+ E G+ V VYGG + PQL+ IR
Sbjct: 67 -RIDP-SKRE-PQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIR 123
Query: 198 EGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQT 257
G I++ATPGRL D + R L V+ +VLDEAD ML LGF + + RQT
Sbjct: 124 NGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQT 183
Query: 258 VMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDN 317
V+ SAT + ++ +A++++ +P V + S T + Q +++ D+K ++ +
Sbjct: 184 VLFSATLPQSIRAIAERHLKDPKHVKIQSKTQTVT-AIEQAHLLVHADQKTSAVLSLLEV 242
Query: 318 MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICV 377
E+ D +++F+ K + ++S L + K+ +L GD++Q RE ++ + G I V
Sbjct: 243 --EDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV 300
Query: 378 ATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430
ATDVA+RGLDVP +THV N D P E YVHR+GRTGRAG+ G ++ L+T ++
Sbjct: 301 ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRE 353
Score = 580 (209.2 bits), Expect = 9.0e-56, P = 9.0e-56
Identities = 134/337 (39%), Positives = 198/337 (58%)
Query: 600 AFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH 659
A + +P I+ + + PS IQ Q+ PI+++GHDMIG AQTGTGKT AF LP ++H
Sbjct: 10 ALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALP-ILH-- 66
Query: 660 LQTTPISERAGPSVLVMAPTRELATQIER--EVNKIDYKGLKAVCVYGGKELEPQLEKIR 717
+ P S+R P L++APTRELA Q+ E G+ V VYGG + PQL+ IR
Sbjct: 67 -RIDP-SKRE-PQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIR 123
Query: 718 EGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQT 777
G I++ATPGRL D + R L V+ +VLDEAD ML LGF + + RQT
Sbjct: 124 NGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQT 183
Query: 778 VMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDN 837
V+ SAT + ++ +A++++ +P V + S T + Q +++ D+K ++ +
Sbjct: 184 VLFSATLPQSIRAIAERHLKDPKHVKIQSKTQTVT-AIEQAHLLVHADQKTSAVLSLLEV 242
Query: 838 MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICV 897
E+ D +++F+ K + ++S L + K+ +L GD++Q RE ++ + G I V
Sbjct: 243 --EDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV 300
Query: 898 ATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
ATDVA+RGLDVP +THV N D P E YVHR+GRTG
Sbjct: 301 ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTG 337
Score = 41 (19.5 bits), Expect = 6.0e-62, Sum P(2) = 6.0e-62
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 717 REGCHILIATPG--RLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTS 768
REG +L+ TP R+ + R + + V+ V L +A +LD + N S
Sbjct: 341 REGRALLLVTPRERRMLQVIER--VTGQKVAEVRLPDAQAVLDARIKKLTNSLS 392
>UNIPROTKB|F1NL04 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000237 "leptotene" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0032880 "regulation
of protein localization" evidence=IEA] [GO:0033391 "chromatoid
body" evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 GO:GO:0000237 EMBL:AADN02054551
EMBL:AADN02054552 EMBL:AADN02054553 IPI:IPI00578446
Ensembl:ENSGALT00000038830 Uniprot:F1NL04
Length = 542
Score = 634 (228.2 bits), Expect = 6.5e-62, P = 6.5e-62
Identities = 142/384 (36%), Positives = 229/384 (59%)
Query: 71 PNPVTSFKQAFQHYPEILRQ-LENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 129
P P+ +F++A ++ + LR+ + ++ +P+Q + P++ +G D++ AQTG+GKT A
Sbjct: 163 PAPLLAFEEA--NFAQTLRKNISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAA 220
Query: 130 FLLPA---LIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYG 185
FLLP ++ + + ++ P +++APTREL QI E K Y ++ V +YG
Sbjct: 221 FLLPIVDRMMKDGVTASAFQKQQEPQCIIVAPTRELINQIFLEARKFVYGTCIRPVVIYG 280
Query: 186 GKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQIN 245
G + + +I +GC+IL ATPGRL D + + I L V ++VLDEADRMLD+GF +
Sbjct: 281 GTQTGHSIRQIMQGCNILCATPGRLLDIIEKGKISLVEVKYLVLDEADRMLDMGFGLDMK 340
Query: 246 KTSIYIN-PN---RQTVMTSATWNKDVQRVAKKYM-VNPVKVNVGSLDLAATHTVTQKII 300
K Y P+ RQT+M SAT+ ++VQR+A +++ + + + +G+ A V Q I+
Sbjct: 341 KLISYPEMPSKDRRQTLMFSATFPEEVQRLAGEFLKTDYIFLVIGNT-CGACSDVQQNIL 399
Query: 301 ILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQED 360
+ K+D L+E + ER MVF+ K +++ L + S S++GD Q +
Sbjct: 400 QVPRLSKRDKLIEILQSTGGER--TMVFVDTKKKADYLAAFLCQENLPSTSIHGDREQRE 457
Query: 361 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSG 420
REIAL D SG +I VAT VASRGLD+ ++ HVIN+D P+ IE+YVHR+GRTGR G +G
Sbjct: 458 REIALRDFRSGKCQILVATSVASRGLDIENVQHVINFDLPNTIEDYVHRIGRTGRCGNTG 517
Query: 421 ESITLMTRKDWSH-AHEIIPILEE 443
++++ + H ++ +L E
Sbjct: 518 KAVSFFDDQSDGHLVQSLLKVLSE 541
Score = 602 (217.0 bits), Expect = 3.1e-58, P = 3.1e-58
Identities = 136/354 (38%), Positives = 214/354 (60%)
Query: 591 PNPVTSFKQAFQHYPEILRQ-LENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 649
P P+ +F++A ++ + LR+ + ++ +P+Q + P++ +G D++ AQTG+GKT A
Sbjct: 163 PAPLLAFEEA--NFAQTLRKNISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAA 220
Query: 650 FLLPA---LIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYG 705
FLLP ++ + + ++ P +++APTREL QI E K Y ++ V +YG
Sbjct: 221 FLLPIVDRMMKDGVTASAFQKQQEPQCIIVAPTRELINQIFLEARKFVYGTCIRPVVIYG 280
Query: 706 GKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQIN 765
G + + +I +GC+IL ATPGRL D + + I L V ++VLDEADRMLD+GF +
Sbjct: 281 GTQTGHSIRQIMQGCNILCATPGRLLDIIEKGKISLVEVKYLVLDEADRMLDMGFGLDMK 340
Query: 766 KTSIYIN-PN---RQTVMTSATWNKDVQRVAKKYM-VNPVKVNVGSLDLAATHTVTQKII 820
K Y P+ RQT+M SAT+ ++VQR+A +++ + + + +G+ A V Q I+
Sbjct: 341 KLISYPEMPSKDRRQTLMFSATFPEEVQRLAGEFLKTDYIFLVIGNT-CGACSDVQQNIL 399
Query: 821 ILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQED 880
+ K+D L+E + ER MVF+ K +++ L + S S++GD Q +
Sbjct: 400 QVPRLSKRDKLIEILQSTGGER--TMVFVDTKKKADYLAAFLCQENLPSTSIHGDREQRE 457
Query: 881 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
REIAL D SG +I VAT VASRGLD+ ++ HVIN+D P+ IE+YVHR+GRTG
Sbjct: 458 REIALRDFRSGKCQILVATSVASRGLDIENVQHVINFDLPNTIEDYVHRIGRTG 511
>MGI|MGI:102670 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0007141 "male meiosis I" evidence=IMP]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0032880 "regulation of protein localization" evidence=IMP]
[GO:0033391 "chromatoid body" evidence=ISO;IDA] [GO:0044464 "cell
part" evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0071546 "pi-body" evidence=IDA] [GO:0071547
"piP-body" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:102670 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0048471 GO:GO:0032880
GO:GO:0007283 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
HOVERGEN:HBG015893 CTD:54514 KO:K13982 GO:GO:0071547 GO:GO:0000237
EMBL:AK014844 EMBL:D14859 IPI:IPI00121394 RefSeq:NP_034159.1
UniGene:Mm.12818 ProteinModelPortal:Q61496 SMR:Q61496 STRING:Q61496
PhosphoSite:Q61496 REPRODUCTION-2DPAGE:IPI00121394
REPRODUCTION-2DPAGE:Q61496 PaxDb:Q61496 PRIDE:Q61496
Ensembl:ENSMUST00000075748 GeneID:13206 KEGG:mmu:13206
UCSC:uc007rwm.2 ChiTaRS:DDX4 NextBio:283368 Bgee:Q61496
CleanEx:MM_DDX4 Genevestigator:Q61496 GermOnline:ENSMUSG00000021758
Uniprot:Q61496
Length = 702
Score = 634 (228.2 bits), Expect = 6.5e-62, P = 6.5e-62
Identities = 148/403 (36%), Positives = 234/403 (58%)
Query: 71 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 130
P + +F++A + + +T +P+Q + PI+++G D++ AQTG+GKT AF
Sbjct: 257 PPAILTFEEA-NLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAF 315
Query: 131 LLPALIHTH---LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGG 186
LLP L H + + E P +++APTREL QI E K + ++AV +YGG
Sbjct: 316 LLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGG 375
Query: 187 KEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINK 246
+ + +I +GC+IL ATPGRL D + + I LK V ++VLDEADRMLD+GF P++ K
Sbjct: 376 TQFGHSVRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKK 435
Query: 247 T-SIYINPN---RQTVMTSATWNKDVQRVAKKYMVNP-VKVNVGSLDLAATHTVTQKIII 301
S P+ RQT++ SAT+ +++QR+A ++ + + V VG + A V Q I+
Sbjct: 436 LISCPGMPSKEQRQTLLFSATFPEEIQRLAGDFLKSSYLFVAVGQVG-GACRDVQQTILQ 494
Query: 302 LDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSC-SLYGDLSQED 360
+ + K++ L+E N+ +ER MVF+ K +++ L CQ + S S++GD Q +
Sbjct: 495 VGQYSKREKLVEILRNIGDER--TMVFVETKKKADFIATFL-CQEKISTTSIHGDREQRE 551
Query: 361 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSG 420
RE AL D G + VAT VA+RGLD+ ++ HVIN+D PS I+EYVHR+GRTGR G +G
Sbjct: 552 REQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTG 611
Query: 421 ESITLMTRKDWSH-AHEIIPILEEGGHESYMIWRRDSRIALHV 462
+I+ +H A ++ +L + + W + + +V
Sbjct: 612 RAISFFDTDSDNHLAQPLVKVLSDA-QQDVPAWLEEIAFSTYV 653
Score = 598 (215.6 bits), Expect = 8.9e-58, P = 8.9e-58
Identities = 139/354 (39%), Positives = 213/354 (60%)
Query: 591 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 650
P + +F++A + + +T +P+Q + PI+++G D++ AQTG+GKT AF
Sbjct: 257 PPAILTFEEA-NLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAF 315
Query: 651 LLPALIHTH---LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGG 706
LLP L H + + E P +++APTREL QI E K + ++AV +YGG
Sbjct: 316 LLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGG 375
Query: 707 KELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINK 766
+ + +I +GC+IL ATPGRL D + + I LK V ++VLDEADRMLD+GF P++ K
Sbjct: 376 TQFGHSVRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKK 435
Query: 767 T-SIYINPN---RQTVMTSATWNKDVQRVAKKYMVNP-VKVNVGSLDLAATHTVTQKIII 821
S P+ RQT++ SAT+ +++QR+A ++ + + V VG + A V Q I+
Sbjct: 436 LISCPGMPSKEQRQTLLFSATFPEEIQRLAGDFLKSSYLFVAVGQVG-GACRDVQQTILQ 494
Query: 822 LDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSC-SLYGDLSQED 880
+ + K++ L+E N+ +ER MVF+ K +++ L CQ + S S++GD Q +
Sbjct: 495 VGQYSKREKLVEILRNIGDER--TMVFVETKKKADFIATFL-CQEKISTTSIHGDREQRE 551
Query: 881 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
RE AL D G + VAT VA+RGLD+ ++ HVIN+D PS I+EYVHR+GRTG
Sbjct: 552 REQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTG 605
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 629 (226.5 bits), Expect = 2.6e-61, P = 2.6e-61
Identities = 135/360 (37%), Positives = 213/360 (59%)
Query: 85 PEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTP 144
P+ILR + + P+PIQ QA P ++ G D++ AQTGTGKT F LP L H +
Sbjct: 10 PDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPH 69
Query: 145 ISERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHIL 203
R L++ PTRELA QI V Y ++++ V+GG I PQ+ K+R G +L
Sbjct: 70 AKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVL 129
Query: 204 IATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSAT 263
+ATPGRL D + ++ L V +VLDEADRMLD+GF I + + RQ ++ SAT
Sbjct: 130 VATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSAT 189
Query: 264 WNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERD 323
++ D++ +A+K + NP+++ V + A+ VTQ + +D+ K++ L + ++
Sbjct: 190 FSDDIKALAEKLLHNPLEIEVARRNTASDQ-VTQHVHFVDKKRKRELLSHMIGKGNWQQ- 247
Query: 324 KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 383
V+VF K + ++ L +S +++G+ SQ R AL D SG R+ VATD+A+
Sbjct: 248 -VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAA 306
Query: 384 RGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEE 443
RGLD+ +L HV+NY+ P+ E+YVHR+GRTGRA +GE+++L+ + +I +L++
Sbjct: 307 RGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366
Score = 597 (215.2 bits), Expect = 1.1e-57, P = 1.1e-57
Identities = 127/331 (38%), Positives = 196/331 (59%)
Query: 605 PEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTP 664
P+ILR + + P+PIQ QA P ++ G D++ AQTGTGKT F LP L H +
Sbjct: 10 PDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPH 69
Query: 665 ISERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHIL 723
R L++ PTRELA QI V Y ++++ V+GG + PQ+ K+R G +L
Sbjct: 70 AKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVL 129
Query: 724 IATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSAT 783
+ATPGRL D + ++ L V +VLDEADRMLD+GF I + + RQ ++ SAT
Sbjct: 130 VATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSAT 189
Query: 784 WNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERD 843
++ D++ +A+K + NP+++ V + A+ VTQ + +D+ K++ L + ++
Sbjct: 190 FSDDIKALAEKLLHNPLEIEVARRNTASDQ-VTQHVHFVDKKRKRELLSHMIGKGNWQQ- 247
Query: 844 KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 903
V+VF K + ++ L +S +++G+ SQ R AL D SG R+ VATD+A+
Sbjct: 248 -VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAA 306
Query: 904 RGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
RGLD+ +L HV+NY+ P+ E+YVHR+GRTG
Sbjct: 307 RGLDIEELPHVVNYELPNVPEDYVHRIGRTG 337
>WB|WBGene00017162 [details] [associations]
symbol:ddx-23 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0048589 "developmental growth" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0040021 "hermaphrodite germ-line sex determination"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0002119 GO:GO:0040011
GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
GO:GO:0048589 EMBL:FO080705 GO:GO:0010172 GO:GO:0040020
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 HSSP:Q58083 HOGENOM:HOG000268796
OMA:PIRNWKE GO:GO:0040021 RefSeq:NP_498260.2
ProteinModelPortal:Q95QN2 SMR:Q95QN2 STRING:Q95QN2 PaxDb:Q95QN2
EnsemblMetazoa:F01F1.7 GeneID:175818 KEGG:cel:CELE_F01F1.7
CTD:175818 WormBase:F01F1.7 InParanoid:Q95QN2 NextBio:889790
Uniprot:Q95QN2
Length = 730
Score = 381 (139.2 bits), Expect = 3.0e-56, Sum P(2) = 3.0e-56
Identities = 98/257 (38%), Positives = 147/257 (57%)
Query: 529 DRKERD--KWAREPKIIKNVYKED-----PEVANMTPEQVEAFRKKNNDISVSVVTSDGQ 581
D KE++ + +E K K V +D E++ M+ FR+ D ++S+ G+
Sbjct: 241 DEKEQEMHRLEKELKKEKKVAHDDRHWRMKELSEMSDRDWRIFRE---DFNISI--KGGR 295
Query: 582 IDENPDFQIPNPVTSFKQAFQHYP-EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIA 640
+ P P+ ++++A +P E+ + ++ + + P+PIQ QA PI + D+IG+A
Sbjct: 296 V--------PRPLRNWEEA--GFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVA 345
Query: 641 QTGTGKTFAFLLPALIHTHLQTTPISERA-----GPSVLVMAPTRELATQIEREVNKID- 694
+TG+GKT AFLLP L+ + + P ER GP ++MAPTRELA QIE E NK
Sbjct: 346 ETGSGKTAAFLLPLLVW--ITSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGK 403
Query: 695 YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADR 754
G+K V V GG E Q K+R G ++IATPGRL D + + L ++V+LDEADR
Sbjct: 404 LLGIKTVSVIGGASREDQGMKLRMGVEVVIATPGRLLDVLENRYLLLNQCTYVILDEADR 463
Query: 755 MLDLGFEPQINKTSIYI 771
MLD+GFEP + K Y+
Sbjct: 464 MLDMGFEPDVQKVLEYM 480
Score = 380 (138.8 bits), Expect = 2.7e-61, Sum P(2) = 2.7e-61
Identities = 98/257 (38%), Positives = 147/257 (57%)
Query: 9 DRKERD--KWAREPKIIKNVYKED-----PEVANMTPEQVEAFRKKNNDISVSVVTSDGQ 61
D KE++ + +E K K V +D E++ M+ FR+ D ++S+ G+
Sbjct: 241 DEKEQEMHRLEKELKKEKKVAHDDRHWRMKELSEMSDRDWRIFRE---DFNISI--KGGR 295
Query: 62 IDENPDFQIPNPVTSFKQAFQHYP-EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIA 120
+ P P+ ++++A +P E+ + ++ + + P+PIQ QA PI + D+IG+A
Sbjct: 296 V--------PRPLRNWEEA--GFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVA 345
Query: 121 QTGTGKTFAFLLPALIHTHLQTTPISERA-----GPSVLVMAPTRELATQIEREVNKID- 174
+TG+GKT AFLLP L+ + + P ER GP ++MAPTRELA QIE E NK
Sbjct: 346 ETGSGKTAAFLLPLLVW--ITSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGK 403
Query: 175 YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADR 234
G+K V V GG E Q K+R G ++IATPGRL D + + L ++V+LDEADR
Sbjct: 404 LLGIKTVSVIGGASREDQGMKLRMGVEVVIATPGRLLDVLENRYLLLNQCTYVILDEADR 463
Query: 235 MLDLGFEPQINKTSIYI 251
MLD+GFEP + K Y+
Sbjct: 464 MLDMGFEPDVQKVLEYM 480
Score = 329 (120.9 bits), Expect = 2.7e-61, Sum P(2) = 2.7e-61
Identities = 71/189 (37%), Positives = 114/189 (60%)
Query: 255 RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEF 314
RQTVM +AT + ++R+A++Y+ P V++GS T V Q + ++ ED K+ L+E
Sbjct: 509 RQTVMFTATMSSAIERLARQYLRRPAVVHIGSAG-KPTERVEQVVYMVPEDRKRKKLVEV 567
Query: 315 FDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYAR 374
++ + + +++F+ +K +S L K L+G Q+ RE AL+ + G +
Sbjct: 568 LES--QFQPPIIIFVNQKKGADMLSKGLTKLGFKPTVLHGGKGQDQREYALQALKEGTSD 625
Query: 375 ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHA 434
I VATDVA RG+DV D++ V+NYD IE+Y HR+GRTGRAGK G++IT +T D +
Sbjct: 626 ILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRAGKHGKAITFLTPDDTAVY 685
Query: 435 HEIIPILEE 443
++ +L E
Sbjct: 686 FDLKQVLVE 694
Score = 280 (103.6 bits), Expect = 3.0e-56, Sum P(2) = 3.0e-56
Identities = 60/160 (37%), Positives = 96/160 (60%)
Query: 775 RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEF 834
RQTVM +AT + ++R+A++Y+ P V++GS T V Q + ++ ED K+ L+E
Sbjct: 509 RQTVMFTATMSSAIERLARQYLRRPAVVHIGSAG-KPTERVEQVVYMVPEDRKRKKLVEV 567
Query: 835 FDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYAR 894
++ + + +++F+ +K +S L K L+G Q+ RE AL+ + G +
Sbjct: 568 LES--QFQPPIIIFVNQKKGADMLSKGLTKLGFKPTVLHGGKGQDQREYALQALKEGTSD 625
Query: 895 ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
I VATDVA RG+DV D++ V+NYD IE+Y HR+GRTG
Sbjct: 626 ILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTG 665
Score = 68 (29.0 bits), Expect = 1.2e-33, Sum P(3) = 1.2e-33
Identities = 29/102 (28%), Positives = 51/102 (50%)
Query: 671 PSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGK---ELEPQLEKIREGCH-ILIAT 726
P +++ ++ A + + + K+ G K ++GGK + E L+ ++EG IL+AT
Sbjct: 574 PPIIIFVNQKKGADMLSKGLTKL---GFKPTVLHGGKGQDQREYALQALKEGTSDILVAT 630
Query: 727 PGRLNDFVSRASIDLKAVSFVV-LDEADRMLDLGFEPQINKT 767
D R ID+K VS V+ D A + D + +I +T
Sbjct: 631 -----DVAGRG-IDVKDVSLVLNYDMAKSIED--YTHRIGRT 664
Score = 40 (19.1 bits), Expect = 9.4e-56, Sum P(3) = 9.4e-56
Identities = 8/36 (22%), Positives = 20/36 (55%)
Query: 509 IDLGRHIDPEPTMEELMALSDRKERDKWAREPKIIK 544
+D+G D + +E + + +K+ D++ E ++K
Sbjct: 465 LDMGFEPDVQKVLEYMPDTNMKKDTDEFDNEEALMK 500
>RGD|1308793 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10116 "Rattus norvegicus" [GO:0000237 "leptotene"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
[GO:0007141 "male meiosis I" evidence=IEA;ISO] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA;ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0032880 "regulation of protein localization"
evidence=IEA;ISO] [GO:0033391 "chromatoid body" evidence=IEA;ISO]
[GO:0044464 "cell part" evidence=ISO] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA;ISO] [GO:0071546 "pi-body"
evidence=ISO;ISS] [GO:0071547 "piP-body" evidence=ISO;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 627 (225.8 bits), Expect = 4.4e-61, P = 4.4e-61
Identities = 147/384 (38%), Positives = 228/384 (59%)
Query: 71 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 130
P + +F++A + + +T +P+Q + PI+++G D++ AQTG+GKT AF
Sbjct: 269 PPAILTFEEA-NLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAF 327
Query: 131 LLPALIHTH---LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGG 186
LLP L H + + E P +++APTREL QI E K + ++AV +YGG
Sbjct: 328 LLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGG 387
Query: 187 KEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINK 246
+ + +I +GC+IL ATPGRL D + + I LK V ++VLDEADRMLD+GF P++ K
Sbjct: 388 TQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKK 447
Query: 247 T-SIYINPN---RQTVMTSATWNKDVQRVAKKYMV-NPVKVNVGSLDLAATHTVTQKIII 301
S P+ RQT++ SAT+ +++QR+A +++ N + V VG + A V Q I+
Sbjct: 448 LISCPGMPSKEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVG-GACRDVQQSILQ 506
Query: 302 LDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSC-SLYGDLSQED 360
+ KK L+E N+ +ER MVF+ K +++ L CQ + S S++GD Q +
Sbjct: 507 VGPVFKKRKLVEILRNIGDERP--MVFVETKKKADFIATFL-CQEKISTTSIHGDREQRE 563
Query: 361 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSG 420
RE AL D G + VAT VA+RGLD+ ++ HVIN++ PS I+EYVHR+GRTGR G +G
Sbjct: 564 REQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFNLPSTIDEYVHRIGRTGRCGNTG 623
Query: 421 ESITLMTRKDWSH-AHEIIPILEE 443
+I+ + +H A ++ +L +
Sbjct: 624 RAISFFDTESDNHLAQPLVKVLSD 647
Score = 592 (213.5 bits), Expect = 4.2e-57, P = 4.2e-57
Identities = 140/354 (39%), Positives = 212/354 (59%)
Query: 591 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 650
P + +F++A + + +T +P+Q + PI+++G D++ AQTG+GKT AF
Sbjct: 269 PPAILTFEEA-NLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAF 327
Query: 651 LLPALIHTH---LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGG 706
LLP L H + + E P +++APTREL QI E K + ++AV +YGG
Sbjct: 328 LLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGG 387
Query: 707 KELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINK 766
+ + +I +GC+IL ATPGRL D + + I LK V ++VLDEADRMLD+GF P++ K
Sbjct: 388 TQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKK 447
Query: 767 T-SIYINPN---RQTVMTSATWNKDVQRVAKKYMV-NPVKVNVGSLDLAATHTVTQKIII 821
S P+ RQT++ SAT+ +++QR+A +++ N + V VG + A V Q I+
Sbjct: 448 LISCPGMPSKEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVG-GACRDVQQSILQ 506
Query: 822 LDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSC-SLYGDLSQED 880
+ KK L+E N+ +ER MVF+ K +++ L CQ + S S++GD Q +
Sbjct: 507 VGPVFKKRKLVEILRNIGDERP--MVFVETKKKADFIATFL-CQEKISTTSIHGDREQRE 563
Query: 881 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
RE AL D G + VAT VA+RGLD+ ++ HVIN++ PS I+EYVHR+GRTG
Sbjct: 564 REQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFNLPSTIDEYVHRIGRTG 617
>UNIPROTKB|Q64060 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 627 (225.8 bits), Expect = 4.4e-61, P = 4.4e-61
Identities = 147/384 (38%), Positives = 228/384 (59%)
Query: 71 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 130
P + +F++A + + +T +P+Q + PI+++G D++ AQTG+GKT AF
Sbjct: 269 PPAILTFEEA-NLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAF 327
Query: 131 LLPALIHTH---LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGG 186
LLP L H + + E P +++APTREL QI E K + ++AV +YGG
Sbjct: 328 LLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGG 387
Query: 187 KEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINK 246
+ + +I +GC+IL ATPGRL D + + I LK V ++VLDEADRMLD+GF P++ K
Sbjct: 388 TQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKK 447
Query: 247 T-SIYINPN---RQTVMTSATWNKDVQRVAKKYMV-NPVKVNVGSLDLAATHTVTQKIII 301
S P+ RQT++ SAT+ +++QR+A +++ N + V VG + A V Q I+
Sbjct: 448 LISCPGMPSKEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVG-GACRDVQQSILQ 506
Query: 302 LDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSC-SLYGDLSQED 360
+ KK L+E N+ +ER MVF+ K +++ L CQ + S S++GD Q +
Sbjct: 507 VGPVFKKRKLVEILRNIGDERP--MVFVETKKKADFIATFL-CQEKISTTSIHGDREQRE 563
Query: 361 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSG 420
RE AL D G + VAT VA+RGLD+ ++ HVIN++ PS I+EYVHR+GRTGR G +G
Sbjct: 564 REQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFNLPSTIDEYVHRIGRTGRCGNTG 623
Query: 421 ESITLMTRKDWSH-AHEIIPILEE 443
+I+ + +H A ++ +L +
Sbjct: 624 RAISFFDTESDNHLAQPLVKVLSD 647
Score = 592 (213.5 bits), Expect = 4.2e-57, P = 4.2e-57
Identities = 140/354 (39%), Positives = 212/354 (59%)
Query: 591 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 650
P + +F++A + + +T +P+Q + PI+++G D++ AQTG+GKT AF
Sbjct: 269 PPAILTFEEA-NLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAF 327
Query: 651 LLPALIHTH---LQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGG 706
LLP L H + + E P +++APTREL QI E K + ++AV +YGG
Sbjct: 328 LLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGG 387
Query: 707 KELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINK 766
+ + +I +GC+IL ATPGRL D + + I LK V ++VLDEADRMLD+GF P++ K
Sbjct: 388 TQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKK 447
Query: 767 T-SIYINPN---RQTVMTSATWNKDVQRVAKKYMV-NPVKVNVGSLDLAATHTVTQKIII 821
S P+ RQT++ SAT+ +++QR+A +++ N + V VG + A V Q I+
Sbjct: 448 LISCPGMPSKEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVG-GACRDVQQSILQ 506
Query: 822 LDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSC-SLYGDLSQED 880
+ KK L+E N+ +ER MVF+ K +++ L CQ + S S++GD Q +
Sbjct: 507 VGPVFKKRKLVEILRNIGDERP--MVFVETKKKADFIATFL-CQEKISTTSIHGDREQRE 563
Query: 881 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
RE AL D G + VAT VA+RGLD+ ++ HVIN++ PS I+EYVHR+GRTG
Sbjct: 564 REQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFNLPSTIDEYVHRIGRTG 617
>UNIPROTKB|Q91372 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:8355 "Xenopus laevis" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
"nuclear envelope" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS] [GO:0032019
"mitochondrial cloud" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005635 GO:GO:0048477 GO:GO:0007283
GO:GO:0003676 GO:GO:0007281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 HOVERGEN:HBG015893 CTD:54514 KO:K13982
GO:GO:0071547 EMBL:AF046043 PIR:I51235 RefSeq:NP_001081728.1
UniGene:Xl.256 ProteinModelPortal:Q91372 SMR:Q91372 GeneID:398019
KEGG:xla:398019 Xenbase:XB-GENE-1016814 Uniprot:Q91372
Length = 700
Score = 625 (225.1 bits), Expect = 7.4e-61, P = 7.4e-61
Identities = 145/404 (35%), Positives = 229/404 (56%)
Query: 70 IPNPVTSFKQAFQHYPEILRQ-LENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTF 128
+P + +F++A + E LR+ + + +P+Q + PI+M+G D++ AQTG+GKT
Sbjct: 269 VPPAILTFEEA--NLCETLRRNVARAGYVKLTPVQKHSIPIIMAGRDLMACAQTGSGKTA 326
Query: 129 AFLLPAL---IHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVY 184
AFLLP L ++ + + + P +++APTREL QI + K Y ++ V VY
Sbjct: 327 AFLLPILSYMMNEGITASQYLQLQEPEAIIIAPTRELINQIYLDARKFSYGTCVRPVVVY 386
Query: 185 GGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQI 244
GG + + + +GC+IL ATPGRL D VS+ I L + ++VLDEADRMLD+GF P+I
Sbjct: 387 GGIQPVHAMRDVEKGCNILCATPGRLLDIVSKEKIGLSKLRYLVLDEADRMLDMGFAPEI 446
Query: 245 NKT----SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKII 300
K + RQT+M SAT+ ++++R+A Y+ + V L A V Q ++
Sbjct: 447 EKLMTKPGMPTKEKRQTLMFSATYPEEIRRLASNYLKSEHLFVVVGLVGGACSDVAQTVL 506
Query: 301 ILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYR-KSCSLYGDLSQE 359
+ E+ K + L+E + ++ER M+F+ K ++ L CQ + S S++GD Q
Sbjct: 507 EMRENGKMEKLLEILKSSEKER--TMIFVNTKKKADFIAGYL-CQEKFSSTSIHGDREQY 563
Query: 360 DREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKS 419
RE AL D +G + V T VA+RGLD+ ++ HVINYD P ++EYVHR+GRTGR G +
Sbjct: 564 QRESALWDFRTGKCTVIVCTAVAARGLDIENVQHVINYDVPKEVDEYVHRIGRTGRCGNT 623
Query: 420 GESITLMTRKDWSH--AHEIIPILEEGGHESYMIWRRDSRIALH 461
G++ + +D H A ++ IL + H+ W + H
Sbjct: 624 GKATSFFNVQD-DHVIARPLVKILTDA-HQEVPAWLEEIAFGGH 665
Score = 588 (212.0 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 134/355 (37%), Positives = 208/355 (58%)
Query: 590 IPNPVTSFKQAFQHYPEILRQ-LENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTF 648
+P + +F++A + E LR+ + + +P+Q + PI+M+G D++ AQTG+GKT
Sbjct: 269 VPPAILTFEEA--NLCETLRRNVARAGYVKLTPVQKHSIPIIMAGRDLMACAQTGSGKTA 326
Query: 649 AFLLPAL---IHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVY 704
AFLLP L ++ + + + P +++APTREL QI + K Y ++ V VY
Sbjct: 327 AFLLPILSYMMNEGITASQYLQLQEPEAIIIAPTRELINQIYLDARKFSYGTCVRPVVVY 386
Query: 705 GGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQI 764
GG + + + +GC+IL ATPGRL D VS+ I L + ++VLDEADRMLD+GF P+I
Sbjct: 387 GGIQPVHAMRDVEKGCNILCATPGRLLDIVSKEKIGLSKLRYLVLDEADRMLDMGFAPEI 446
Query: 765 NKT----SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKII 820
K + RQT+M SAT+ ++++R+A Y+ + V L A V Q ++
Sbjct: 447 EKLMTKPGMPTKEKRQTLMFSATYPEEIRRLASNYLKSEHLFVVVGLVGGACSDVAQTVL 506
Query: 821 ILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYR-KSCSLYGDLSQE 879
+ E+ K + L+E + ++ER M+F+ K ++ L CQ + S S++GD Q
Sbjct: 507 EMRENGKMEKLLEILKSSEKER--TMIFVNTKKKADFIAGYL-CQEKFSSTSIHGDREQY 563
Query: 880 DREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
RE AL D +G + V T VA+RGLD+ ++ HVINYD P ++EYVHR+GRTG
Sbjct: 564 QRESALWDFRTGKCTVIVCTAVAARGLDIENVQHVINYDVPKEVDEYVHRIGRTG 618
>DICTYBASE|DDB_G0287361 [details] [associations]
symbol:ddx41 "DEAD box protein abstrakt"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 dictyBase:DDB_G0287361
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0006396
EMBL:AAFI02000100 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P09052 RefSeq:XP_637262.1 ProteinModelPortal:Q54KG1 SMR:Q54KG1
IntAct:Q54KG1 EnsemblProtists:DDB0233452 GeneID:8626092
KEGG:ddi:DDB_G0287361 KO:K13116 OMA:DICRYLC Uniprot:Q54KG1
Length = 671
Score = 624 (224.7 bits), Expect = 9.8e-61, P = 9.8e-61
Identities = 149/402 (37%), Positives = 225/402 (55%)
Query: 39 EQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTT 98
E+ E +K D ++++T DG+ IP P+T+FK+ P I LE
Sbjct: 195 ERDEKDHQKVRD-QLNIIT-DGE-------DIPPPITTFKEMKIPKPVIDVLLEK-GIKK 244
Query: 99 PSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTT--PISERAGPSVLVM 156
PSPIQ Q P+++SG DMIGIA TG+GKT F LP ++ + PI + GP L++
Sbjct: 245 PSPIQVQGLPVILSGRDMIGIAYTGSGKTLVFTLPMVLFALEEECKLPIIQGEGPFGLIL 304
Query: 157 APTRELATQ----IEREVNKIDYKG----LKAVCVYGGKEIEPQLEKIREGCHILIATPG 208
P+RELA Q + N + G L+ + GG ++ Q ++G H++IATPG
Sbjct: 305 CPSRELARQTYDLVNSFTNALHKNGGHPQLRTLLAIGGIDLREQEHIFKKGVHMIIATPG 364
Query: 209 RLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDV 268
RL D +++ I+ K ++ LDEADR++DLGFE I RQT++ SAT K +
Sbjct: 365 RLLDLLNKKKINFKLCKYLGLDEADRLIDLGFEDDIRSVLDNFTNQRQTLLFSATMPKKI 424
Query: 269 QRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVF 328
Q A+ +V PV+VNVG AA VTQ++ + + K +L+E + + V++F
Sbjct: 425 QEFARSALVLPVEVNVGRAG-AANLNVTQEVEFVKPEAKIVYLLEC---LQKTPPPVLIF 480
Query: 329 MGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDV 388
K V + L + ++ S++GD SQ++RE A++ G + VATDVAS+GLD
Sbjct: 481 CENKKDVDDIYEYLLLKQVEAVSIHGDKSQDERESAIKAFREGKKDVLVATDVASKGLDF 540
Query: 389 PDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430
P++ HVIN+D P IE Y+HR+GRTGR G G + T + + +
Sbjct: 541 PEIQHVINFDMPREIENYIHRIGRTGRRGNKGVATTFINKNN 582
Score = 603 (217.3 bits), Expect = 2.4e-58, P = 2.4e-58
Identities = 146/386 (37%), Positives = 217/386 (56%)
Query: 559 EQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTT 618
E+ E +K D ++++T DG+ IP P+T+FK+ P I LE
Sbjct: 195 ERDEKDHQKVRD-QLNIIT-DGE-------DIPPPITTFKEMKIPKPVIDVLLEK-GIKK 244
Query: 619 PSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTT--PISERAGPSVLVM 676
PSPIQ Q P+++SG DMIGIA TG+GKT F LP ++ + PI + GP L++
Sbjct: 245 PSPIQVQGLPVILSGRDMIGIAYTGSGKTLVFTLPMVLFALEEECKLPIIQGEGPFGLIL 304
Query: 677 APTRELATQ----IEREVNKIDYKG----LKAVCVYGGKELEPQLEKIREGCHILIATPG 728
P+RELA Q + N + G L+ + GG +L Q ++G H++IATPG
Sbjct: 305 CPSRELARQTYDLVNSFTNALHKNGGHPQLRTLLAIGGIDLREQEHIFKKGVHMIIATPG 364
Query: 729 RLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDV 788
RL D +++ I+ K ++ LDEADR++DLGFE I RQT++ SAT K +
Sbjct: 365 RLLDLLNKKKINFKLCKYLGLDEADRLIDLGFEDDIRSVLDNFTNQRQTLLFSATMPKKI 424
Query: 789 QRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVF 848
Q A+ +V PV+VNVG AA VTQ++ + + K +L+E + + V++F
Sbjct: 425 QEFARSALVLPVEVNVGRAG-AANLNVTQEVEFVKPEAKIVYLLEC---LQKTPPPVLIF 480
Query: 849 MGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDV 908
K V + L + ++ S++GD SQ++RE A++ G + VATDVAS+GLD
Sbjct: 481 CENKKDVDDIYEYLLLKQVEAVSIHGDKSQDERESAIKAFREGKKDVLVATDVASKGLDF 540
Query: 909 PDLTHVINYDFPSHIEEYVHRVGRTG 934
P++ HVIN+D P IE Y+HR+GRTG
Sbjct: 541 PEIQHVINFDMPREIENYIHRIGRTG 566
>FB|FBgn0032690 [details] [associations]
symbol:CG10333 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=ISS] [GO:0005682 "U5
snRNP" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014134
GO:GO:0022008 GO:GO:0005682 GO:GO:0003676 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
OMA:PIRNWKE FlyBase:FBgn0032690 EMBL:BT021222 RefSeq:NP_609888.2
UniGene:Dm.456 SMR:Q9VJ74 STRING:Q9VJ74 EnsemblMetazoa:FBtr0081072
GeneID:35112 KEGG:dme:Dmel_CG10333 UCSC:CG10333-RA
InParanoid:Q9VJ74 GenomeRNAi:35112 NextBio:791924 Uniprot:Q9VJ74
Length = 822
Score = 386 (140.9 bits), Expect = 3.0e-58, Sum P(4) = 3.0e-58
Identities = 84/190 (44%), Positives = 121/190 (63%)
Query: 589 QIPNPVTSFKQAFQHYP-EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKT 647
+IPNP+ S+ ++ +P EI+ ++ + + P+PIQ QA PI + D+IG+A+TG+GKT
Sbjct: 388 RIPNPIRSWNES--GFPKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKT 445
Query: 648 FAFLLPALIHTHLQTTPISERA-----GPSVLVMAPTRELATQIEREVNKIDYK-GLKAV 701
AFL+P L + +Q+ P ER GP ++MAPTRELA QIE E K G++ V
Sbjct: 446 LAFLIPLL--SWIQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTV 503
Query: 702 CVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFE 761
V GG E Q ++R GC I+IATPGRL D + + L +++VLDEADRM+D+GFE
Sbjct: 504 VVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFE 563
Query: 762 PQINKTSIYI 771
P + K Y+
Sbjct: 564 PDVQKILEYM 573
Score = 385 (140.6 bits), Expect = 1.1e-60, Sum P(3) = 1.1e-60
Identities = 84/190 (44%), Positives = 121/190 (63%)
Query: 69 QIPNPVTSFKQAFQHYP-EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKT 127
+IPNP+ S+ ++ +P EI+ ++ + + P+PIQ QA PI + D+IG+A+TG+GKT
Sbjct: 388 RIPNPIRSWNES--GFPKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKT 445
Query: 128 FAFLLPALIHTHLQTTPISERA-----GPSVLVMAPTRELATQIEREVNKIDYK-GLKAV 181
AFL+P L + +Q+ P ER GP ++MAPTRELA QIE E K G++ V
Sbjct: 446 LAFLIPLL--SWIQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTV 503
Query: 182 CVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFE 241
V GG E Q ++R GC I+IATPGRL D + + L +++VLDEADRM+D+GFE
Sbjct: 504 VVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFE 563
Query: 242 PQINKTSIYI 251
P + K Y+
Sbjct: 564 PDVQKILEYM 573
Score = 324 (119.1 bits), Expect = 1.1e-60, Sum P(3) = 1.1e-60
Identities = 71/176 (40%), Positives = 105/176 (59%)
Query: 255 RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEF 314
RQTVM +AT V+R+A+ Y+ P V +GS+ T Q + ++ E++K+ LME
Sbjct: 602 RQTVMFTATMPPAVERLARTYLRRPATVYIGSVG-KPTERTEQIVYMMGENDKRKKLMEI 660
Query: 315 FDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYAR 374
+ V++F+ +K ++ L SC+L+G QE RE AL + SG
Sbjct: 661 LSRKIDP--PVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKGQEQREYALAALKSGAKD 718
Query: 375 ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430
I VATDVA RG+D+ D++ VINYD IE+Y HR+GRTGRAGK+G +I+ +T+ D
Sbjct: 719 ILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRAGKTGCAISFVTKDD 774
Score = 282 (104.3 bits), Expect = 3.0e-58, Sum P(4) = 3.0e-58
Identities = 63/160 (39%), Positives = 92/160 (57%)
Query: 775 RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEF 834
RQTVM +AT V+R+A+ Y+ P V +GS+ T Q + ++ E++K+ LME
Sbjct: 602 RQTVMFTATMPPAVERLARTYLRRPATVYIGSVG-KPTERTEQIVYMMGENDKRKKLMEI 660
Query: 835 FDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYAR 894
+ V++F+ +K ++ L SC+L+G QE RE AL + SG
Sbjct: 661 LSRKIDP--PVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKGQEQREYALAALKSGAKD 718
Query: 895 ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
I VATDVA RG+D+ D++ VINYD IE+Y HR+GRTG
Sbjct: 719 ILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTG 758
Score = 59 (25.8 bits), Expect = 3.0e-58, Sum P(4) = 3.0e-58
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 301 ILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQED 360
+ D D +D +++ +N+ +ER V F GR +V+ + D+ Q R YGDL ++
Sbjct: 276 VFDWDAGEDTSIDY-NNLYKERHHVQ-FFGR-GNVAGI--DIKEQKRTQSKFYGDLLEKR 330
Query: 361 R 361
R
Sbjct: 331 R 331
Score = 47 (21.6 bits), Expect = 6.4e-57, Sum P(3) = 6.4e-57
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 515 IDPEP-TMEELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFR 565
+ EP ++EEL+ D+K+R++ AR + + E E+VE R
Sbjct: 124 VKKEPLSLEELL---DKKKREEEARSKPVFLTKEQRALEAIKRRQEEVERQR 172
Score = 42 (19.8 bits), Expect = 1.1e-60, Sum P(3) = 1.1e-60
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 1 MEELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFR 45
+EEL+ D+K+R++ AR + + E E+VE R
Sbjct: 131 LEELL---DKKKREEEARSKPVFLTKEQRALEAIKRRQEEVERQR 172
Score = 41 (19.5 bits), Expect = 2.9e-56, Sum P(4) = 2.9e-56
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 509 IDLGRHIDPEPTMEELMALSDRKERDKWAREPKIIKNVY 547
ID+G D + +E + + + + ++ E K+++N Y
Sbjct: 558 IDMGFEPDVQKILEYMPVTNLKPDTEEAEDETKLMENFY 596
Score = 37 (18.1 bits), Expect = 5.7e-56, Sum P(4) = 5.7e-56
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 355 DLSQEDREIALEDITSGYARI 375
DL+ +D+E LE I Y I
Sbjct: 240 DLTHKDKEKELEAIRERYLGI 260
>WB|WBGene00019245 [details] [associations]
symbol:sacy-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0008270
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HSSP:P10081 KO:K13116
OMA:KDQEERS HOGENOM:HOG000268792 EMBL:FO081567 RefSeq:NP_491962.1
ProteinModelPortal:Q9N5K1 SMR:Q9N5K1 PaxDb:Q9N5K1
EnsemblMetazoa:H27M09.1 GeneID:172413 KEGG:cel:CELE_H27M09.1
UCSC:H27M09.1 CTD:172413 WormBase:H27M09.1 InParanoid:Q9N5K1
NextBio:875413 Uniprot:Q9N5K1
Length = 630
Score = 622 (224.0 bits), Expect = 1.7e-60, P = 1.7e-60
Identities = 157/457 (34%), Positives = 248/457 (54%)
Query: 4 LMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQID 63
L+A+++ + +K+ EP I ++ + + E E RK+ + +S +G
Sbjct: 134 LLAVAELTKGEKY-EEP--IVTAWRPPGHIRRQSQEDYEIQRKR---LGISC---EGD-- 182
Query: 64 ENPDFQIPNPVTSFKQAFQHYPEILRQL--ENLSFTTPSPIQAQAWPILMSGHDMIGIAQ 121
IP P+ SF + +P+ L + + TP+ IQ Q P+ +SG DMIGIA
Sbjct: 183 -----HIPPPIGSFLE--MKFPKSLLEFMQKQKGIVTPTAIQIQGIPVALSGRDMIGIAS 235
Query: 122 TGTGKTFAFLLPALIHTHLQTT--PISERAGPSVLVMAPTRELATQI-EREVNKIDYKG- 177
TG+GKT F+LP ++ Q P GP L++ P+RELA QI + + D G
Sbjct: 236 TGSGKTMTFVLPLVMFCLEQEMKLPFMRSEGPFGLIIVPSRELARQIFDLIIEMFDALGK 295
Query: 178 -----LKA-VCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDE 231
++A +C+ GG I Q + +R+G HI++ATPGRL+D +++ I+L+ ++VLDE
Sbjct: 296 AGLPEMRAGLCI-GGVPIGEQAKDVRDGIHIVVATPGRLSDMLTKKIINLEVCRYLVLDE 354
Query: 232 ADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAA 291
ADRMLD+GFE +I + RQT++ SAT + +Q AK +V P+ VNVG AA
Sbjct: 355 ADRMLDMGFEDEIKSIFYFFKAQRQTLLFSATMPRKIQFFAKSALVKPIVVNVGRAG-AA 413
Query: 292 THTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCS 351
+ V Q++ + + K L+ + + + KV++F +K V + L + + S
Sbjct: 414 SLNVLQELEFVRSENK---LVRVLECLQKTSPKVLIFAEKKVDVDNIYEYLLVKGVEVAS 470
Query: 352 LYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVG 411
++G Q DR +E + VATDVAS+GLD + HVIN+D P IE YVHR+G
Sbjct: 471 IHGGKDQSDRHAGIEAFRKNEKDVLVATDVASKGLDFQGIEHVINFDMPEDIENYVHRIG 530
Query: 412 RTGRAGKSGESITLMTRK-DWSHAHEIIPILEEGGHE 447
RTGR+G+ G + T + +K + S ++ +L E G E
Sbjct: 531 RTGRSGRKGLATTFINKKSEMSVLSDLKQLLAEAGQE 567
Score = 578 (208.5 bits), Expect = 1.5e-55, P = 1.5e-55
Identities = 146/423 (34%), Positives = 229/423 (54%)
Query: 524 LMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQID 583
L+A+++ + +K+ EP I ++ + + E E RK+ + +S +G
Sbjct: 134 LLAVAELTKGEKY-EEP--IVTAWRPPGHIRRQSQEDYEIQRKR---LGISC---EGD-- 182
Query: 584 ENPDFQIPNPVTSFKQAFQHYPEILRQL--ENLSFTTPSPIQAQAWPILMSGHDMIGIAQ 641
IP P+ SF + +P+ L + + TP+ IQ Q P+ +SG DMIGIA
Sbjct: 183 -----HIPPPIGSFLE--MKFPKSLLEFMQKQKGIVTPTAIQIQGIPVALSGRDMIGIAS 235
Query: 642 TGTGKTFAFLLPALIHTHLQTT--PISERAGPSVLVMAPTRELATQI-EREVNKIDYKG- 697
TG+GKT F+LP ++ Q P GP L++ P+RELA QI + + D G
Sbjct: 236 TGSGKTMTFVLPLVMFCLEQEMKLPFMRSEGPFGLIIVPSRELARQIFDLIIEMFDALGK 295
Query: 698 -----LKA-VCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDE 751
++A +C+ GG + Q + +R+G HI++ATPGRL+D +++ I+L+ ++VLDE
Sbjct: 296 AGLPEMRAGLCI-GGVPIGEQAKDVRDGIHIVVATPGRLSDMLTKKIINLEVCRYLVLDE 354
Query: 752 ADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAA 811
ADRMLD+GFE +I + RQT++ SAT + +Q AK +V P+ VNVG AA
Sbjct: 355 ADRMLDMGFEDEIKSIFYFFKAQRQTLLFSATMPRKIQFFAKSALVKPIVVNVGRAG-AA 413
Query: 812 THTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCS 871
+ V Q++ + + K L+ + + + KV++F +K V + L + + S
Sbjct: 414 SLNVLQELEFVRSENK---LVRVLECLQKTSPKVLIFAEKKVDVDNIYEYLLVKGVEVAS 470
Query: 872 LYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVG 931
++G Q DR +E + VATDVAS+GLD + HVIN+D P IE YVHR+G
Sbjct: 471 IHGGKDQSDRHAGIEAFRKNEKDVLVATDVASKGLDFQGIEHVINFDMPEDIENYVHRIG 530
Query: 932 RTG 934
RTG
Sbjct: 531 RTG 533
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 597 (215.2 bits), Expect = 3.4e-60, Sum P(2) = 3.4e-60
Identities = 138/356 (38%), Positives = 199/356 (55%)
Query: 85 PEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTP 144
P++L+ +E + TP+PIQA A P + G D++GIAQTGTGKT +F LP + T L
Sbjct: 11 PKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMI--TLLARGR 68
Query: 145 ISERAGPSVLVMAPTRELATQIEREVNKID--YKGLKAVCVYGGKEIEPQLEKIREGCHI 202
R P LV+ PTRELA Q+ + K KA+ + GG + Q I G +
Sbjct: 69 ARARM-PRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLI-GGVSFKEQDALIDRGVDV 126
Query: 203 LIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINP-NRQTVMTS 261
LIATPGRL D R + L V +V+DEADRMLD+GF P I + + P RQT+ S
Sbjct: 127 LIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERI-FSLTPFTRQTLFFS 185
Query: 262 ATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIIL-----DED--EKKDWLMEF 314
AT +++R+ ++ P ++ V A+ T+ Q +++ D + EK+ L
Sbjct: 186 ATMAPEIERITNTFLSAPARIEVAR-QATASETIEQGVVLFKGSRRDREASEKRAVLRAL 244
Query: 315 FDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYAR 374
D E+ ++F RK V ++ L + ++GDL Q R L+ G R
Sbjct: 245 IDAEGEKCTNAIIFCNRKTDVDIVAKSLQKYGYDAAPIHGDLDQSQRTRTLDGFREGKLR 304
Query: 375 ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430
+ VA+DVA+RGLDVP ++HV N+D P H E+YVHR+GRTGRAG+ G++ITL +D
Sbjct: 305 LLVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGRDGKAITLCIPRD 360
Score = 555 (200.4 bits), Expect = 5.2e-53, P = 5.2e-53
Identities = 130/340 (38%), Positives = 187/340 (55%)
Query: 605 PEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTP 664
P++L+ +E + TP+PIQA A P + G D++GIAQTGTGKT +F LP + T L
Sbjct: 11 PKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMI--TLLARGR 68
Query: 665 ISERAGPSVLVMAPTRELATQIEREVNKID--YKGLKAVCVYGGKELEPQLEKIREGCHI 722
R P LV+ PTRELA Q+ + K KA+ + GG + Q I G +
Sbjct: 69 ARARM-PRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLI-GGVSFKEQDALIDRGVDV 126
Query: 723 LIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINP-NRQTVMTS 781
LIATPGRL D R + L V +V+DEADRMLD+GF P I + + P RQT+ S
Sbjct: 127 LIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERI-FSLTPFTRQTLFFS 185
Query: 782 ATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIIL-----DED--EKKDWLMEF 834
AT +++R+ ++ P ++ V A+ T+ Q +++ D + EK+ L
Sbjct: 186 ATMAPEIERITNTFLSAPARIEVAR-QATASETIEQGVVLFKGSRRDREASEKRAVLRAL 244
Query: 835 FDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYAR 894
D E+ ++F RK V ++ L + ++GDL Q R L+ G R
Sbjct: 245 IDAEGEKCTNAIIFCNRKTDVDIVAKSLQKYGYDAAPIHGDLDQSQRTRTLDGFREGKLR 304
Query: 895 ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
+ VA+DVA+RGLDVP ++HV N+D P H E+YVHR+GRTG
Sbjct: 305 LLVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTG 344
Score = 46 (21.3 bits), Expect = 3.4e-60, Sum P(2) = 3.4e-60
Identities = 22/76 (28%), Positives = 32/76 (42%)
Query: 516 DPEPTMEELMALSDRKER-DKWAREPKIIKNVYKEDP--EVANMTPEQVEAFRKKNNDIS 572
+ +P EE A +D+ R D REP + + K DP A+ + R + +D
Sbjct: 389 EAKPRREEKPARADKPARSDADKREP-VKREADKRDPVKREADKRDRKGGERRDRKDDRG 447
Query: 573 VSVVTSDGQIDENPDF 588
VV G D P F
Sbjct: 448 ARVV---GMGDHLPSF 460
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 617 (222.3 bits), Expect = 6.2e-60, P = 6.2e-60
Identities = 135/337 (40%), Positives = 206/337 (61%)
Query: 96 FTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPS-VL 154
+ TPSPIQAQA P +++G D++ AQTGTGKT F LP L L ++G + L
Sbjct: 21 YDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL---ELLAKGHKAKSGQTRAL 77
Query: 155 VMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDF 213
V+ PTRELA Q+ V Y L++ V+GG I PQ+ K+R G +L+ATPGRL D
Sbjct: 78 VLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKLRHGVDVLVATPGRLLDL 137
Query: 214 VSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAK 273
V + ++ + +VLDEADRMLD+GF I K + RQ +M SAT++ +++ +AK
Sbjct: 138 VQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQNLMFSATFSDEIRELAK 197
Query: 274 KYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKA 333
+ +PV+++V + AAT TV Q I +D+ +K L++ E +V+VF K
Sbjct: 198 GLVNHPVEISVTPRNAAAT-TVKQWICPVDKTQKSALLIQLIKQ--ENWQQVLVFSRTKH 254
Query: 334 SVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTH 393
+ ++ L + +++G+ SQ R AL D SG R+ VATD+A+RGLD+ L
Sbjct: 255 GANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAARGLDIDQLPQ 314
Query: 394 VINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430
V+N+D P+ E+YVHR+GRTGRAG +G++++L++ ++
Sbjct: 315 VVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEE 351
Score = 579 (208.9 bits), Expect = 1.2e-55, P = 1.2e-55
Identities = 129/321 (40%), Positives = 192/321 (59%)
Query: 616 FTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPS-VL 674
+ TPSPIQAQA P +++G D++ AQTGTGKT F LP L L ++G + L
Sbjct: 21 YDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL---ELLAKGHKAKSGQTRAL 77
Query: 675 VMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDF 733
V+ PTRELA Q+ V Y L++ V+GG + PQ+ K+R G +L+ATPGRL D
Sbjct: 78 VLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKLRHGVDVLVATPGRLLDL 137
Query: 734 VSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAK 793
V + ++ + +VLDEADRMLD+GF I K + RQ +M SAT++ +++ +AK
Sbjct: 138 VQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQNLMFSATFSDEIRELAK 197
Query: 794 KYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKA 853
+ +PV+++V + AAT TV Q I +D+ +K L++ E +V+VF K
Sbjct: 198 GLVNHPVEISVTPRNAAAT-TVKQWICPVDKTQKSALLIQLIKQ--ENWQQVLVFSRTKH 254
Query: 854 SVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTH 913
+ ++ L + +++G+ SQ R AL D SG R+ VATD+A+RGLD+ L
Sbjct: 255 GANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAARGLDIDQLPQ 314
Query: 914 VINYDFPSHIEEYVHRVGRTG 934
V+N+D P+ E+YVHR+GRTG
Sbjct: 315 VVNFDLPNVPEDYVHRIGRTG 335
>WB|WBGene00008119 [details] [associations]
symbol:C46F11.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0000003 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268793 KO:K12835 GeneTree:ENSGT00610000086076
OMA:QEYANLM EMBL:Z81449 PIR:T19974 RefSeq:NP_497743.1
ProteinModelPortal:Q93382 SMR:Q93382 STRING:Q93382 PaxDb:Q93382
EnsemblMetazoa:C46F11.4 GeneID:175469 KEGG:cel:CELE_C46F11.4
UCSC:C46F11.4 CTD:175469 WormBase:C46F11.4 InParanoid:Q93382
NextBio:888300 Uniprot:Q93382
Length = 811
Score = 614 (221.2 bits), Expect = 1.4e-59, P = 1.4e-59
Identities = 137/382 (35%), Positives = 216/382 (56%)
Query: 71 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 130
P PV SF F ++ + + P+PIQA A P +SG D++GIA+TG+GKT A+
Sbjct: 261 PRPVCSFAH-FSFDKLLMEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAY 319
Query: 131 LLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGG-KE 188
L PA++H + + GP +++ PTRELA Q+ +E K + +C YGG +
Sbjct: 320 LWPAIVHI-MDQPDLKAGEGPVAVIVVPTRELAIQVFQEAKKFCKVYNINPICAYGGGSK 378
Query: 189 IEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTS 248
E E EG +++ TPGR+ D V + + +F+V DEADRM D+GFE Q+ S
Sbjct: 379 WEQSNELQNEGAEMVVCTPGRIIDLVKMGATNFLRTTFLVFDEADRMFDMGFEAQVKSIS 438
Query: 249 IYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIIL-DEDEK 307
++ P+RQ +M SAT+ + V+R+A+ +V+PV++ G + A + QK+ ++ ++D K
Sbjct: 439 DHVRPDRQCLMFSATFKQKVERLARDALVDPVRIVQGEVG-EANADIEQKVFVMQNQDVK 497
Query: 308 KDWLMEFFDNMDE--ERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIAL 365
WL+ N+ E KV++F+ +K ++ L + L+GD+ Q +R L
Sbjct: 498 LHWLIR---NLVEFASLGKVLIFVTKKLDSEDVAKKLKMKDFDIVLLHGDMLQAERNENL 554
Query: 366 EDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITL 425
++I VATDVA+RGLD+ ++ VIN+D I+ +VHR+GRTGRAG G + TL
Sbjct: 555 LKFRKK-SQILVATDVAARGLDISEIRTVINFDMARDIDTHVHRIGRTGRAGHKGTAYTL 613
Query: 426 MTRKDWSHAHEIIPILEEGGHE 447
+T KD ++ LE E
Sbjct: 614 VTEKDIEMVGHLVKNLESVSQE 635
Score = 565 (203.9 bits), Expect = 1.9e-52, P = 1.9e-52
Identities = 125/349 (35%), Positives = 200/349 (57%)
Query: 591 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 650
P PV SF F ++ + + P+PIQA A P +SG D++GIA+TG+GKT A+
Sbjct: 261 PRPVCSFAH-FSFDKLLMEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAY 319
Query: 651 LLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGG-KE 708
L PA++H + + GP +++ PTRELA Q+ +E K + +C YGG +
Sbjct: 320 LWPAIVHI-MDQPDLKAGEGPVAVIVVPTRELAIQVFQEAKKFCKVYNINPICAYGGGSK 378
Query: 709 LEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTS 768
E E EG +++ TPGR+ D V + + +F+V DEADRM D+GFE Q+ S
Sbjct: 379 WEQSNELQNEGAEMVVCTPGRIIDLVKMGATNFLRTTFLVFDEADRMFDMGFEAQVKSIS 438
Query: 769 IYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIIL-DEDEK 827
++ P+RQ +M SAT+ + V+R+A+ +V+PV++ G + A + QK+ ++ ++D K
Sbjct: 439 DHVRPDRQCLMFSATFKQKVERLARDALVDPVRIVQGEVG-EANADIEQKVFVMQNQDVK 497
Query: 828 KDWLMEFFDNMDE--ERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIAL 885
WL+ N+ E KV++F+ +K ++ L + L+GD+ Q +R L
Sbjct: 498 LHWLIR---NLVEFASLGKVLIFVTKKLDSEDVAKKLKMKDFDIVLLHGDMLQAERNENL 554
Query: 886 EDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
++I VATDVA+RGLD+ ++ VIN+D I+ +VHR+GRTG
Sbjct: 555 LKFRKK-SQILVATDVAARGLDISEIRTVINFDMARDIDTHVHRIGRTG 602
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 614 (221.2 bits), Expect = 1.4e-59, P = 1.4e-59
Identities = 138/348 (39%), Positives = 203/348 (58%)
Query: 92 ENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGP 151
EN T +PIQ +A P+++SG D+IG A+TGTGKT AF+LP L + P E +
Sbjct: 22 EN-GITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE----KIDP--ESSDV 74
Query: 152 SVLVMAPTRELATQIEREVNK--IDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGR 209
L++APTRELA QI E+ K + + + + +YGG+++ QL K++ HI++ATPGR
Sbjct: 75 QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNTHIVVATPGR 134
Query: 210 LNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQ 269
L D + R +IDL +S +VLDEAD+ML GF I ++QT++ SAT KD++
Sbjct: 135 LLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLFSATIPKDIK 194
Query: 270 RVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFM 329
++AK+YM P + V S ++ T+ Q++I + K D L D ++ ++F
Sbjct: 195 KLAKRYMDEPQMIQVQSEEVTVD-TIEQRVIETTDRAKPDALRFVMDR--DQPFLAVIFC 251
Query: 330 GRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVP 389
K S + +L L+GD+ Q RE ++ + +ATDVA+RGLDV
Sbjct: 252 RTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVD 311
Query: 390 DLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEI 437
+THV NYD P +E Y+HR+GRTGRAG SG +IT + KD H EI
Sbjct: 312 GVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359
Score = 558 (201.5 bits), Expect = 2.4e-53, P = 2.4e-53
Identities = 126/325 (38%), Positives = 189/325 (58%)
Query: 612 ENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGP 671
EN T +PIQ +A P+++SG D+IG A+TGTGKT AF+LP L + P E +
Sbjct: 22 EN-GITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE----KIDP--ESSDV 74
Query: 672 SVLVMAPTRELATQIEREVNK--IDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGR 729
L++APTRELA QI E+ K + + + + +YGG+++ QL K++ HI++ATPGR
Sbjct: 75 QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNTHIVVATPGR 134
Query: 730 LNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQ 789
L D + R +IDL +S +VLDEAD+ML GF I ++QT++ SAT KD++
Sbjct: 135 LLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLFSATIPKDIK 194
Query: 790 RVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFM 849
++AK+YM P + V S ++ T+ Q++I + K D L D ++ ++F
Sbjct: 195 KLAKRYMDEPQMIQVQSEEVTVD-TIEQRVIETTDRAKPDALRFVMDR--DQPFLAVIFC 251
Query: 850 GRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVP 909
K S + +L L+GD+ Q RE ++ + +ATDVA+RGLDV
Sbjct: 252 RTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVD 311
Query: 910 DLTHVINYDFPSHIEEYVHRVGRTG 934
+THV NYD P +E Y+HR+GRTG
Sbjct: 312 GVTHVFNYDIPEDVESYIHRIGRTG 336
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 614 (221.2 bits), Expect = 1.4e-59, P = 1.4e-59
Identities = 138/348 (39%), Positives = 203/348 (58%)
Query: 92 ENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGP 151
EN T +PIQ +A P+++SG D+IG A+TGTGKT AF+LP L + P E +
Sbjct: 22 EN-GITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE----KIDP--ESSDV 74
Query: 152 SVLVMAPTRELATQIEREVNK--IDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGR 209
L++APTRELA QI E+ K + + + + +YGG+++ QL K++ HI++ATPGR
Sbjct: 75 QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNTHIVVATPGR 134
Query: 210 LNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQ 269
L D + R +IDL +S +VLDEAD+ML GF I ++QT++ SAT KD++
Sbjct: 135 LLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLFSATIPKDIK 194
Query: 270 RVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFM 329
++AK+YM P + V S ++ T+ Q++I + K D L D ++ ++F
Sbjct: 195 KLAKRYMDEPQMIQVQSEEVTVD-TIEQRVIETTDRAKPDALRFVMDR--DQPFLAVIFC 251
Query: 330 GRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVP 389
K S + +L L+GD+ Q RE ++ + +ATDVA+RGLDV
Sbjct: 252 RTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVD 311
Query: 390 DLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEI 437
+THV NYD P +E Y+HR+GRTGRAG SG +IT + KD H EI
Sbjct: 312 GVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359
Score = 558 (201.5 bits), Expect = 2.4e-53, P = 2.4e-53
Identities = 126/325 (38%), Positives = 189/325 (58%)
Query: 612 ENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGP 671
EN T +PIQ +A P+++SG D+IG A+TGTGKT AF+LP L + P E +
Sbjct: 22 EN-GITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILE----KIDP--ESSDV 74
Query: 672 SVLVMAPTRELATQIEREVNK--IDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGR 729
L++APTRELA QI E+ K + + + + +YGG+++ QL K++ HI++ATPGR
Sbjct: 75 QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNTHIVVATPGR 134
Query: 730 LNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQ 789
L D + R +IDL +S +VLDEAD+ML GF I ++QT++ SAT KD++
Sbjct: 135 LLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLFSATIPKDIK 194
Query: 790 RVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFM 849
++AK+YM P + V S ++ T+ Q++I + K D L D ++ ++F
Sbjct: 195 KLAKRYMDEPQMIQVQSEEVTVD-TIEQRVIETTDRAKPDALRFVMDR--DQPFLAVIFC 251
Query: 850 GRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVP 909
K S + +L L+GD+ Q RE ++ + +ATDVA+RGLDV
Sbjct: 252 RTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVD 311
Query: 910 DLTHVINYDFPSHIEEYVHRVGRTG 934
+THV NYD P +E Y+HR+GRTG
Sbjct: 312 GVTHVFNYDIPEDVESYIHRIGRTG 336
>UNIPROTKB|Q0C4B9 [details] [associations]
symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
Length = 536
Score = 592 (213.5 bits), Expect = 1.7e-59, Sum P(2) = 1.7e-59
Identities = 133/346 (38%), Positives = 197/346 (56%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 146
IL+ + +T P+PIQ +A P ++ G D+ G+AQTGTGKT AF+LP + L T
Sbjct: 15 ILKAVTESGYTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVLPMI--QRLSTGRAR 72
Query: 147 ERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIA 205
R P L++ PTRELA Q+ K Y L + GG + Q ++ G +LIA
Sbjct: 73 ARM-PRCLILCPTRELAAQVAENFEKYGKYLKLTMALLIGGVSFKEQETLLQRGVDVLIA 131
Query: 206 TPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWN 265
TPGRL D R + + V +++DEADRMLD+GF P I K + NRQT++ SAT+
Sbjct: 132 TPGRLMDQFDRGKLLMMGVETLIIDEADRMLDMGFIPDIEKICAKLPANRQTLLFSATFP 191
Query: 266 KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKV 325
D+QR+AK + +P K+ V + T++Q ++ L ++ K ++ K
Sbjct: 192 TDIQRLAKTFQKDPKKIEV-TRPAQTAETISQFVVKLPTNDGKARRTALRRVIEATNVKN 250
Query: 326 -MVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASR 384
+VF RK V +++ L + ++GDL Q R L+ G ++ VA+DVA+R
Sbjct: 251 GIVFCNRKVEVDIVAASLTKHGHDAAPIHGDLPQSVRSETLQRFRDGKLKLLVASDVAAR 310
Query: 385 GLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430
GLD+PD+ HV N+ P E+YVHR+GRTGRAG++GES T++T D
Sbjct: 311 GLDIPDVGHVFNFGPPPKDEDYVHRIGRTGRAGRTGESYTVVTPAD 356
Score = 545 (196.9 bits), Expect = 6.5e-52, P = 6.5e-52
Identities = 124/330 (37%), Positives = 184/330 (55%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 666
IL+ + +T P+PIQ +A P ++ G D+ G+AQTGTGKT AF+LP + L T
Sbjct: 15 ILKAVTESGYTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVLPMI--QRLSTGRAR 72
Query: 667 ERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIA 725
R P L++ PTRELA Q+ K Y L + GG + Q ++ G +LIA
Sbjct: 73 ARM-PRCLILCPTRELAAQVAENFEKYGKYLKLTMALLIGGVSFKEQETLLQRGVDVLIA 131
Query: 726 TPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWN 785
TPGRL D R + + V +++DEADRMLD+GF P I K + NRQT++ SAT+
Sbjct: 132 TPGRLMDQFDRGKLLMMGVETLIIDEADRMLDMGFIPDIEKICAKLPANRQTLLFSATFP 191
Query: 786 KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKV 845
D+QR+AK + +P K+ V + T++Q ++ L ++ K ++ K
Sbjct: 192 TDIQRLAKTFQKDPKKIEV-TRPAQTAETISQFVVKLPTNDGKARRTALRRVIEATNVKN 250
Query: 846 -MVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASR 904
+VF RK V +++ L + ++GDL Q R L+ G ++ VA+DVA+R
Sbjct: 251 GIVFCNRKVEVDIVAASLTKHGHDAAPIHGDLPQSVRSETLQRFRDGKLKLLVASDVAAR 310
Query: 905 GLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
GLD+PD+ HV N+ P E+YVHR+GRTG
Sbjct: 311 GLDIPDVGHVFNFGPPPKDEDYVHRIGRTG 340
Score = 45 (20.9 bits), Expect = 1.7e-59, Sum P(2) = 1.7e-59
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 503 IQMINKIDLGRHIDPEPTMEELMALSDRKERDK 535
++MI K D+ + PE +EEL L ++RD+
Sbjct: 364 VKMIKK-DVPEFM-PEGLLEELETLPPEEKRDR 394
Score = 43 (20.2 bits), Expect = 2.7e-59, Sum P(2) = 2.7e-59
Identities = 14/36 (38%), Positives = 16/36 (44%)
Query: 528 SDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEA 563
SDR ER R K +V D V + E VEA
Sbjct: 420 SDRSERAPRRRREKEDGDVAVADAPVETVATETVEA 455
>POMBASE|SPCC63.11 [details] [associations]
symbol:prp28 "U5 snRNP-associated protein Prp28
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC63.11
GO:GO:0005524 GO:GO:0005737 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0000354 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE OrthoDB:EOG4KPXK0 PIR:T41512 RefSeq:NP_587984.1
ProteinModelPortal:Q9Y7T7 STRING:Q9Y7T7 EnsemblFungi:SPCC63.11.1
GeneID:2538728 KEGG:spo:SPCC63.11 NextBio:20799913 Uniprot:Q9Y7T7
Length = 662
Score = 369 (135.0 bits), Expect = 3.4e-59, Sum P(2) = 3.4e-59
Identities = 94/244 (38%), Positives = 144/244 (59%)
Query: 12 ERDKWAREPKII----KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPD 67
E+DK AR ++I K K D + + +EA + ++ ++ D I D
Sbjct: 188 EQDK-ARAHELIQLQEKRAKKIDWDDVPWREKPLEAMKPRD----WRILKEDYNISIKGD 242
Query: 68 FQIPNPVTSFKQAFQHYP-EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGK 126
+PNP+ ++++A P E+L+ L+ +++ PS IQ A P+L+ D+IGIA+TG+GK
Sbjct: 243 -DLPNPLRNWEEA--GLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGK 299
Query: 127 TFAFLLPALIHTHLQTTPISE---RAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVC 182
T AF++P +I + P++E GP +V+APTRELA QI+ E NK + G + V
Sbjct: 300 TAAFIIPLIIAIS-KLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVS 358
Query: 183 VYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEP 242
V GG E Q ++ +G HI++ATPGRL D + R L ++VV+DEADRMLD+GFE
Sbjct: 359 VVGGHAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFED 418
Query: 243 QINK 246
+NK
Sbjct: 419 DVNK 422
Score = 369 (135.0 bits), Expect = 4.4e-54, Sum P(3) = 4.4e-54
Identities = 94/244 (38%), Positives = 144/244 (59%)
Query: 532 ERDKWAREPKII----KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPD 587
E+DK AR ++I K K D + + +EA + ++ ++ D I D
Sbjct: 188 EQDK-ARAHELIQLQEKRAKKIDWDDVPWREKPLEAMKPRD----WRILKEDYNISIKGD 242
Query: 588 FQIPNPVTSFKQAFQHYP-EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGK 646
+PNP+ ++++A P E+L+ L+ +++ PS IQ A P+L+ D+IGIA+TG+GK
Sbjct: 243 -DLPNPLRNWEEA--GLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGK 299
Query: 647 TFAFLLPALIHTHLQTTPISE---RAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVC 702
T AF++P +I + P++E GP +V+APTRELA QI+ E NK + G + V
Sbjct: 300 TAAFIIPLIIAIS-KLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVS 358
Query: 703 VYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEP 762
V GG E Q ++ +G HI++ATPGRL D + R L ++VV+DEADRMLD+GFE
Sbjct: 359 VVGGHAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFED 418
Query: 763 QINK 766
+NK
Sbjct: 419 DVNK 422
Score = 318 (117.0 bits), Expect = 3.4e-59, Sum P(2) = 3.4e-59
Identities = 66/176 (37%), Positives = 108/176 (61%)
Query: 255 RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEF 314
RQT+M SAT V +AK Y++ PV + +G++ A V Q++ ++ +D KK +E
Sbjct: 450 RQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQAVDR-VEQRVEMISDDSKKWRRVEE 508
Query: 315 FDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYAR 374
+ +++F+ K ++ A++ L + +L+G SQE RE A+E + + A
Sbjct: 509 ILESNRFSPPIIIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTAD 568
Query: 375 ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430
I VATD+A RG+D+P+++ V+NY+ IE+Y HR+GRTGRAGKSG +IT + +D
Sbjct: 569 ILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGTAITFLGPED 624
Score = 274 (101.5 bits), Expect = 4.4e-54, Sum P(3) = 4.4e-54
Identities = 57/160 (35%), Positives = 96/160 (60%)
Query: 775 RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEF 834
RQT+M SAT V +AK Y++ PV + +G++ A V Q++ ++ +D KK +E
Sbjct: 450 RQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQAVDR-VEQRVEMISDDSKKWRRVEE 508
Query: 835 FDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYAR 894
+ +++F+ K ++ A++ L + +L+G SQE RE A+E + + A
Sbjct: 509 ILESNRFSPPIIIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTAD 568
Query: 895 ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
I VATD+A RG+D+P+++ V+NY+ IE+Y HR+GRTG
Sbjct: 569 ILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTG 608
Score = 63 (27.2 bits), Expect = 2.1e-32, Sum P(2) = 2.1e-32
Identities = 25/87 (28%), Positives = 42/87 (48%)
Query: 666 SERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQ---LEKIR-EGCH 721
S R P +++ + I +++N I G AV ++G K E + +E++R +
Sbjct: 512 SNRFSPPIIIFVNLKRNIEAIAKQLNAI---GWHAVTLHGSKSQEQRERAIEQLRNKTAD 568
Query: 722 ILIATPGRLNDFVSRASIDLKAVSFVV 748
IL+AT D R ID+ VS V+
Sbjct: 569 ILVAT-----DIAGRG-IDIPNVSLVL 589
Score = 38 (18.4 bits), Expect = 4.4e-54, Sum P(3) = 4.4e-54
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 427 TRKDWSHAHEIIPILEE 443
T +D + AHE+I + E+
Sbjct: 187 TEQDKARAHELIQLQEK 203
>DICTYBASE|DDB_G0277857 [details] [associations]
symbol:helB2 "putative U5 small nuclear
ribonucleoprotein" species:44689 "Dictyostelium discoideum"
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0277857 GO:GO:0005524 GO:GO:0005737
GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0006397
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 GO:GO:0000375 HSSP:P09052 EMBL:X81824
RefSeq:XP_642321.1 ProteinModelPortal:Q54Y81 STRING:Q54Y81
EnsemblProtists:DDB0219950 GeneID:8621527 KEGG:ddi:DDB_G0277857
OMA:DRYRDND Uniprot:Q54Y81
Length = 834
Score = 410 (149.4 bits), Expect = 3.6e-59, Sum P(2) = 3.6e-59
Identities = 86/183 (46%), Positives = 124/183 (67%)
Query: 71 PNPVTSFKQAFQHYP-EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 129
PNP+ +++++ + P EIL + L + PSPIQ Q+ PI ++G D++GIA+TG+GKT A
Sbjct: 409 PNPIRTWQES--NLPREILEAIRQLGYEKPSPIQMQSIPISLTGRDILGIAETGSGKTCA 466
Query: 130 FLLPALIHTHLQT--TPISERAGPSVLVMAPTRELATQIEREV-NKIDYKGLKAVCVYGG 186
F++P LI+ Q T +E GP LVMAPTREL QIE+E N + G + V + GG
Sbjct: 467 FVIPMLIYISKQPRLTKDTEADGPYALVMAPTRELVQQIEKETRNFAQHFGFRVVSLVGG 526
Query: 187 KEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINK 246
+ IE Q ++ +GC I+IATPGRLND + + + L +++VLDEAD M+DLGFEPQ+
Sbjct: 527 QSIEDQAYQVSKGCEIIIATPGRLNDCLEKRYLVLNQCNYIVLDEADMMIDLGFEPQV-- 584
Query: 247 TSI 249
TS+
Sbjct: 585 TSV 587
Score = 408 (148.7 bits), Expect = 1.3e-33, Sum P(2) = 1.3e-33
Identities = 85/183 (46%), Positives = 124/183 (67%)
Query: 591 PNPVTSFKQAFQHYP-EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 649
PNP+ +++++ + P EIL + L + PSPIQ Q+ PI ++G D++GIA+TG+GKT A
Sbjct: 409 PNPIRTWQES--NLPREILEAIRQLGYEKPSPIQMQSIPISLTGRDILGIAETGSGKTCA 466
Query: 650 FLLPALIHTHLQT--TPISERAGPSVLVMAPTRELATQIEREV-NKIDYKGLKAVCVYGG 706
F++P LI+ Q T +E GP LVMAPTREL QIE+E N + G + V + GG
Sbjct: 467 FVIPMLIYISKQPRLTKDTEADGPYALVMAPTRELVQQIEKETRNFAQHFGFRVVSLVGG 526
Query: 707 KELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINK 766
+ +E Q ++ +GC I+IATPGRLND + + + L +++VLDEAD M+DLGFEPQ+
Sbjct: 527 QSIEDQAYQVSKGCEIIIATPGRLNDCLEKRYLVLNQCNYIVLDEADMMIDLGFEPQV-- 584
Query: 767 TSI 769
TS+
Sbjct: 585 TSV 587
Score = 280 (103.6 bits), Expect = 3.6e-59, Sum P(2) = 3.6e-59
Identities = 72/224 (32%), Positives = 119/224 (53%)
Query: 219 IDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVN 278
+D SF+ E D M + + + +++ IY R T++ SAT V++++KKY+
Sbjct: 588 LDAMPSSFLK-SEDDEMAE---KQESDRSHIY----RTTILFSATMPPLVEKLSKKYLRR 639
Query: 279 PVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAM 338
P + +G I + E++KK+ L + D +++F+ +K +
Sbjct: 640 PCTITIGEAGKVVDRIRQTVIFVKSENDKKEHLTQLIK--DGPPPPIIIFVNKKKHCDII 697
Query: 339 SSDLACQYRKSCS-LYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINY 397
+ L + R S + L+ SQE RE ALE + +AT VASRG+ V +THVIN+
Sbjct: 698 APVLE-ECRVSYTILHSGRSQEQREAALEGFKKRKYEVLIATGVASRGIHVDGVTHVINF 756
Query: 398 DFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPIL 441
D P +IE+Y HR+GRTGRAG +G + + +T KD +++ IL
Sbjct: 757 DIPKNIEDYTHRIGRTGRAGSAGLASSFITDKDVEIMYDLKQIL 800
Score = 245 (91.3 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 76/257 (29%), Positives = 129/257 (50%)
Query: 686 IEREVNKIDYKGLKAVCVYGGKELEPQLEK---IREGC-HILIATPGRLND--FVSRASI 739
IE + ++ KG + + G+ L LEK + C +I++ + D F + +
Sbjct: 529 IEDQAYQVS-KGCEIIIATPGR-LNDCLEKRYLVLNQCNYIVLDEADMMIDLGFEPQVTS 586
Query: 740 DLKAV-SFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVN 798
L A+ S + E D M + + + +++ IY R T++ SAT V++++KKY+
Sbjct: 587 VLDAMPSSFLKSEDDEMAE---KQESDRSHIY----RTTILFSATMPPLVEKLSKKYLRR 639
Query: 799 PVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAM 858
P + +G I + E++KK+ L + D +++F+ +K +
Sbjct: 640 PCTITIGEAGKVVDRIRQTVIFVKSENDKKEHLTQLIK--DGPPPPIIIFVNKKKHCDII 697
Query: 859 SSDLACQYRKSCS-LYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINY 917
+ L + R S + L+ SQE RE ALE + +AT VASRG+ V +THVIN+
Sbjct: 698 APVLE-ECRVSYTILHSGRSQEQREAALEGFKKRKYEVLIATGVASRGIHVDGVTHVINF 756
Query: 918 DFPSHIEEYVHRVGRTG 934
D P +IE+Y HR+GRTG
Sbjct: 757 DIPKNIEDYTHRIGRTG 773
Score = 39 (18.8 bits), Expect = 1.3e-33, Sum P(2) = 1.3e-33
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 419 SGESITLMTRKDWSHAHEIIPILEEGG 445
S + + MT++DW E I +GG
Sbjct: 380 SKKPLKSMTKRDWHIFKEDFNISTKGG 406
>TIGR_CMR|DET_0183 [details] [associations]
symbol:DET_0183 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000027 GenomeReviews:CP000027_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_180931.1 ProteinModelPortal:Q3ZA18
STRING:Q3ZA18 GeneID:3230538 KEGG:det:DET0183 PATRIC:21607443
OMA:NFAPAVM ProtClustDB:CLSK837629
BioCyc:DETH243164:GJNF-183-MONOMER Uniprot:Q3ZA18
Length = 560
Score = 609 (219.4 bits), Expect = 5.1e-59, P = 5.1e-59
Identities = 130/364 (35%), Positives = 210/364 (57%)
Query: 76 SFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPAL 135
SF ++F P ++ + + P+PIQAQA P ++ GHD+IG+AQTGTGKT A+ LP +
Sbjct: 2 SF-ESFNFAPAVMAGVRACGYQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPVI 60
Query: 136 IHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVC-VYGGKEIEPQLE 194
+ +TP R LV+APTRELA QI + + C +YGG ++ Q+
Sbjct: 61 --QKMLSTP---RGRVRTLVLAPTRELACQIAESFRSLGQRARIRECSIYGGVNMDQQIR 115
Query: 195 KIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT-SIYINP 253
++R G +++A PGRL D + R +ID+ V +++DEADRM D+GF+P I + P
Sbjct: 116 RLRSGVDVVVACPGRLLDHIWRGTIDICGVETLIIDEADRMFDMGFQPDIQSILKCLVQP 175
Query: 254 NRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLME 313
+ QT++ SAT +V+++ + NPV + +G+ A +V+ + + +K L+E
Sbjct: 176 H-QTLLFSATMPPEVRKLTLETQTNPVTIQIGTQ--APASSVSHSVYPVKNHQKTPLLIE 232
Query: 314 FFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYA 373
E V++F K ++ +++ + SL G+LSQ R +E G
Sbjct: 233 ILKTT--ETKSVLIFARTKYGAENLADEISRAGFTTASLQGNLSQNRRHAVMEGFRRGNF 290
Query: 374 RICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSH 433
+I VATD+A+RGLD+ ++HVINYD P E+Y HR+GRTGR ++G++++L+T +D
Sbjct: 291 KILVATDIAARGLDIDHISHVINYDMPDTPEDYTHRIGRTGRFDRTGQALSLVTGRDGDM 350
Query: 434 AHEI 437
+I
Sbjct: 351 VRDI 354
Score = 581 (209.6 bits), Expect = 7.0e-56, P = 7.0e-56
Identities = 125/343 (36%), Positives = 196/343 (57%)
Query: 596 SFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPAL 655
SF ++F P ++ + + P+PIQAQA P ++ GHD+IG+AQTGTGKT A+ LP +
Sbjct: 2 SF-ESFNFAPAVMAGVRACGYQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPVI 60
Query: 656 IHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVC-VYGGKELEPQLE 714
+ +TP R LV+APTRELA QI + + C +YGG ++ Q+
Sbjct: 61 --QKMLSTP---RGRVRTLVLAPTRELACQIAESFRSLGQRARIRECSIYGGVNMDQQIR 115
Query: 715 KIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT-SIYINP 773
++R G +++A PGRL D + R +ID+ V +++DEADRM D+GF+P I + P
Sbjct: 116 RLRSGVDVVVACPGRLLDHIWRGTIDICGVETLIIDEADRMFDMGFQPDIQSILKCLVQP 175
Query: 774 NRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLME 833
+ QT++ SAT +V+++ + NPV + +G+ A +V+ + + +K L+E
Sbjct: 176 H-QTLLFSATMPPEVRKLTLETQTNPVTIQIGTQ--APASSVSHSVYPVKNHQKTPLLIE 232
Query: 834 FFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYA 893
E V++F K ++ +++ + SL G+LSQ R +E G
Sbjct: 233 ILKTT--ETKSVLIFARTKYGAENLADEISRAGFTTASLQGNLSQNRRHAVMEGFRRGNF 290
Query: 894 RICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936
+I VATD+A+RGLD+ ++HVINYD P E+Y HR+GRTG F
Sbjct: 291 KILVATDIAARGLDIDHISHVINYDMPDTPEDYTHRIGRTGRF 333
>UNIPROTKB|Q0C354 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
Length = 464
Score = 609 (219.4 bits), Expect = 5.1e-59, P = 5.1e-59
Identities = 140/345 (40%), Positives = 197/345 (57%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 146
IL L +T P+PIQ QA P+++ G D++G+AQTGTGKT AF P L +P
Sbjct: 18 ILTSLTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFAAPILDRLSRNASPAP 77
Query: 147 ERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEIEPQLEKIREGCHILIA 205
R G VLV+APTRELA QI L+ V V GG +I Q+ ++ G HIL+A
Sbjct: 78 VR-GTRVLVLAPTRELAGQIATSFGTYGAGLNLRVVMVCGGAKIGGQIRQLERGAHILVA 136
Query: 206 TPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWN 265
TPGRL D + + ++ L V ++LDEAD+MLDLGF + + + RQT+ SAT
Sbjct: 137 TPGRLIDLMEQRAVSLDKVETLILDEADQMLDLGFIHALRAIAKNVPSKRQTLFFSATMP 196
Query: 266 KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKV 325
K V+ +A ++ NP +V+V A + Q++ +++ EK L+E D E
Sbjct: 197 KAVESLAATFLRNPAEVSVAPPATTAGR-IEQRVCFVEQPEKASLLIEKI--RDPELRSA 253
Query: 326 MVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRG 385
+VF K + LA S +++G+ SQ RE ALE +G I VATD+A+RG
Sbjct: 254 IVFTRTKHGADGVVKRLAKADIDSVAIHGNKSQSQREKALEAFKAGRVPILVATDIAARG 313
Query: 386 LDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430
+ V LTHVINYD P E++VHR+GRT RAG SG +I+ +R +
Sbjct: 314 IHVDALTHVINYDLPDVPEQFVHRIGRTARAGNSGVAISFCSRDE 358
Score = 572 (206.4 bits), Expect = 6.9e-55, P = 6.9e-55
Identities = 132/328 (40%), Positives = 186/328 (56%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 666
IL L +T P+PIQ QA P+++ G D++G+AQTGTGKT AF P L +P
Sbjct: 18 ILTSLTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFAAPILDRLSRNASPAP 77
Query: 667 ERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKELEPQLEKIREGCHILIA 725
R G VLV+APTRELA QI L+ V V GG ++ Q+ ++ G HIL+A
Sbjct: 78 VR-GTRVLVLAPTRELAGQIATSFGTYGAGLNLRVVMVCGGAKIGGQIRQLERGAHILVA 136
Query: 726 TPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWN 785
TPGRL D + + ++ L V ++LDEAD+MLDLGF + + + RQT+ SAT
Sbjct: 137 TPGRLIDLMEQRAVSLDKVETLILDEADQMLDLGFIHALRAIAKNVPSKRQTLFFSATMP 196
Query: 786 KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKV 845
K V+ +A ++ NP +V+V A + Q++ +++ EK L+E D E
Sbjct: 197 KAVESLAATFLRNPAEVSVAPPATTAGR-IEQRVCFVEQPEKASLLIEKI--RDPELRSA 253
Query: 846 MVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRG 905
+VF K + LA S +++G+ SQ RE ALE +G I VATD+A+RG
Sbjct: 254 IVFTRTKHGADGVVKRLAKADIDSVAIHGNKSQSQREKALEAFKAGRVPILVATDIAARG 313
Query: 906 LDVPDLTHVINYDFPSHIEEYVHRVGRT 933
+ V LTHVINYD P E++VHR+GRT
Sbjct: 314 IHVDALTHVINYDLPDVPEQFVHRIGRT 341
>UNIPROTKB|Q8EDC4 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 609 (219.4 bits), Expect = 5.1e-59, P = 5.1e-59
Identities = 131/348 (37%), Positives = 212/348 (60%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 146
+L+ L+++ TP+ IQ QA PI ++G D++ ++TG+GKT AFLLPAL + T +S
Sbjct: 12 LLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRV-ISTRALS 70
Query: 147 ERAGPSVLVMAPTRELATQIEREVNK-IDYKGLKAVCVYGGKEIEPQLEKIREGCHILIA 205
+R P VL++ PTRELA Q+ ++ + KA+ V GG+ Q + + + H ++A
Sbjct: 71 KR-DPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAKEPHFIVA 129
Query: 206 TPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYIN-PNRQTVMTSATW 264
TPGR+ D + + ++ L + ++LDEADRMLDLGF PQ+ + + RQT+M SAT
Sbjct: 130 TPGRIADHLEQKNLFLNGLELLILDEADRMLDLGFAPQLKAINEAADHKRRQTLMFSATL 189
Query: 265 N-KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERD 323
+ ++ +A + NP+ V +G+ A ++Q+I + D + K+ L+ + DE
Sbjct: 190 DHSEINEIAAALLKNPLHVAIGTAH-AEHQDISQRIYLCDHLDHKEALLSRLLS-DESHK 247
Query: 324 KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 383
+V++F +A +++ L+ Q + +L G+L Q R ++ G +I V TDVAS
Sbjct: 248 QVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQFARGQQQILVTTDVAS 307
Query: 384 RGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDW 431
RGLD+ +++ VIN+D P EEYVHR+GRTGRAG G++I+L+ KDW
Sbjct: 308 RGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDW 355
Score = 558 (201.5 bits), Expect = 2.4e-53, P = 2.4e-53
Identities = 122/331 (36%), Positives = 199/331 (60%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 666
+L+ L+++ TP+ IQ QA PI ++G D++ ++TG+GKT AFLLPAL + T +S
Sbjct: 12 LLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRV-ISTRALS 70
Query: 667 ERAGPSVLVMAPTRELATQIEREVNK-IDYKGLKAVCVYGGKELEPQLEKIREGCHILIA 725
+R P VL++ PTRELA Q+ ++ + KA+ V GG+ Q + + + H ++A
Sbjct: 71 KR-DPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAKEPHFIVA 129
Query: 726 TPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYIN-PNRQTVMTSATW 784
TPGR+ D + + ++ L + ++LDEADRMLDLGF PQ+ + + RQT+M SAT
Sbjct: 130 TPGRIADHLEQKNLFLNGLELLILDEADRMLDLGFAPQLKAINEAADHKRRQTLMFSATL 189
Query: 785 N-KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERD 843
+ ++ +A + NP+ V +G+ A ++Q+I + D + K+ L+ + DE
Sbjct: 190 DHSEINEIAAALLKNPLHVAIGTAH-AEHQDISQRIYLCDHLDHKEALLSRLLS-DESHK 247
Query: 844 KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 903
+V++F +A +++ L+ Q + +L G+L Q R ++ G +I V TDVAS
Sbjct: 248 QVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQFARGQQQILVTTDVAS 307
Query: 904 RGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
RGLD+ +++ VIN+D P EEYVHR+GRTG
Sbjct: 308 RGLDLLNVSLVINFDMPKFAEEYVHRIGRTG 338
>TIGR_CMR|SO_2838 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 609 (219.4 bits), Expect = 5.1e-59, P = 5.1e-59
Identities = 131/348 (37%), Positives = 212/348 (60%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 146
+L+ L+++ TP+ IQ QA PI ++G D++ ++TG+GKT AFLLPAL + T +S
Sbjct: 12 LLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRV-ISTRALS 70
Query: 147 ERAGPSVLVMAPTRELATQIEREVNK-IDYKGLKAVCVYGGKEIEPQLEKIREGCHILIA 205
+R P VL++ PTRELA Q+ ++ + KA+ V GG+ Q + + + H ++A
Sbjct: 71 KR-DPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAKEPHFIVA 129
Query: 206 TPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYIN-PNRQTVMTSATW 264
TPGR+ D + + ++ L + ++LDEADRMLDLGF PQ+ + + RQT+M SAT
Sbjct: 130 TPGRIADHLEQKNLFLNGLELLILDEADRMLDLGFAPQLKAINEAADHKRRQTLMFSATL 189
Query: 265 N-KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERD 323
+ ++ +A + NP+ V +G+ A ++Q+I + D + K+ L+ + DE
Sbjct: 190 DHSEINEIAAALLKNPLHVAIGTAH-AEHQDISQRIYLCDHLDHKEALLSRLLS-DESHK 247
Query: 324 KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 383
+V++F +A +++ L+ Q + +L G+L Q R ++ G +I V TDVAS
Sbjct: 248 QVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQFARGQQQILVTTDVAS 307
Query: 384 RGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDW 431
RGLD+ +++ VIN+D P EEYVHR+GRTGRAG G++I+L+ KDW
Sbjct: 308 RGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDW 355
Score = 558 (201.5 bits), Expect = 2.4e-53, P = 2.4e-53
Identities = 122/331 (36%), Positives = 199/331 (60%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 666
+L+ L+++ TP+ IQ QA PI ++G D++ ++TG+GKT AFLLPAL + T +S
Sbjct: 12 LLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRV-ISTRALS 70
Query: 667 ERAGPSVLVMAPTRELATQIEREVNK-IDYKGLKAVCVYGGKELEPQLEKIREGCHILIA 725
+R P VL++ PTRELA Q+ ++ + KA+ V GG+ Q + + + H ++A
Sbjct: 71 KR-DPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAKEPHFIVA 129
Query: 726 TPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYIN-PNRQTVMTSATW 784
TPGR+ D + + ++ L + ++LDEADRMLDLGF PQ+ + + RQT+M SAT
Sbjct: 130 TPGRIADHLEQKNLFLNGLELLILDEADRMLDLGFAPQLKAINEAADHKRRQTLMFSATL 189
Query: 785 N-KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERD 843
+ ++ +A + NP+ V +G+ A ++Q+I + D + K+ L+ + DE
Sbjct: 190 DHSEINEIAAALLKNPLHVAIGTAH-AEHQDISQRIYLCDHLDHKEALLSRLLS-DESHK 247
Query: 844 KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 903
+V++F +A +++ L+ Q + +L G+L Q R ++ G +I V TDVAS
Sbjct: 248 QVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQFARGQQQILVTTDVAS 307
Query: 904 RGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
RGLD+ +++ VIN+D P EEYVHR+GRTG
Sbjct: 308 RGLDLLNVSLVINFDMPKFAEEYVHRIGRTG 338
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 606 (218.4 bits), Expect = 1.1e-58, P = 1.1e-58
Identities = 136/343 (39%), Positives = 211/343 (61%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 146
IL+ +E + TPSPIQ QA P +++G D++ AQTGTGKT F LP L L
Sbjct: 12 ILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL---ELLAKGPK 68
Query: 147 ERAGP-SVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILI 204
RA L++ PTRELA QI+ V + LK+ V+GG +I PQ++++ +G IL+
Sbjct: 69 VRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILV 128
Query: 205 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 264
ATPGRL D ++ ++ + +VLDEADRMLD+GF I+K + RQ ++ SAT+
Sbjct: 129 ATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQNLLFSATF 188
Query: 265 NKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDK 324
+ +++ +AK + NPV+++V + A TV Q I D +K D L++ + ++
Sbjct: 189 STEIRELAKGLVNNPVEISVSPANSTA-RTVEQCIYPADVKKKPDMLVKLVKEGNWQQ-- 245
Query: 325 VMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASR 384
V+VFM K + +++ L Q + +++G+ SQ R AL D +G RI VATD+A+R
Sbjct: 246 VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAAR 305
Query: 385 GLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMT 427
G+D+P L V+N++ P E+YVHR+GRTGRAG+ G++I+L++
Sbjct: 306 GIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVS 348
Score = 571 (206.1 bits), Expect = 8.9e-55, P = 8.9e-55
Identities = 128/329 (38%), Positives = 198/329 (60%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 666
IL+ +E + TPSPIQ QA P +++G D++ AQTGTGKT F LP L L P
Sbjct: 12 ILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL--ELLAKGPKV 69
Query: 667 ERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIA 725
L++ PTRELA QI+ V + LK+ V+GG ++ PQ++++ +G IL+A
Sbjct: 70 RANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVA 129
Query: 726 TPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWN 785
TPGRL D ++ ++ + +VLDEADRMLD+GF I+K + RQ ++ SAT++
Sbjct: 130 TPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQNLLFSATFS 189
Query: 786 KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKV 845
+++ +AK + NPV+++V + A TV Q I D +K D L++ + ++ V
Sbjct: 190 TEIRELAKGLVNNPVEISVSPANSTA-RTVEQCIYPADVKKKPDMLVKLVKEGNWQQ--V 246
Query: 846 MVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRG 905
+VFM K + +++ L Q + +++G+ SQ R AL D +G RI VATD+A+RG
Sbjct: 247 LVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARG 306
Query: 906 LDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
+D+P L V+N++ P E+YVHR+GRTG
Sbjct: 307 IDIPQLPQVVNFELPKIAEDYVHRIGRTG 335
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 606 (218.4 bits), Expect = 1.1e-58, P = 1.1e-58
Identities = 136/343 (39%), Positives = 211/343 (61%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 146
IL+ +E + TPSPIQ QA P +++G D++ AQTGTGKT F LP L L
Sbjct: 12 ILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL---ELLAKGPK 68
Query: 147 ERAGP-SVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILI 204
RA L++ PTRELA QI+ V + LK+ V+GG +I PQ++++ +G IL+
Sbjct: 69 VRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILV 128
Query: 205 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 264
ATPGRL D ++ ++ + +VLDEADRMLD+GF I+K + RQ ++ SAT+
Sbjct: 129 ATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQNLLFSATF 188
Query: 265 NKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDK 324
+ +++ +AK + NPV+++V + A TV Q I D +K D L++ + ++
Sbjct: 189 STEIRELAKGLVNNPVEISVSPANSTA-RTVEQCIYPADVKKKPDMLVKLVKEGNWQQ-- 245
Query: 325 VMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASR 384
V+VFM K + +++ L Q + +++G+ SQ R AL D +G RI VATD+A+R
Sbjct: 246 VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAAR 305
Query: 385 GLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMT 427
G+D+P L V+N++ P E+YVHR+GRTGRAG+ G++I+L++
Sbjct: 306 GIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVS 348
Score = 571 (206.1 bits), Expect = 8.9e-55, P = 8.9e-55
Identities = 128/329 (38%), Positives = 198/329 (60%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 666
IL+ +E + TPSPIQ QA P +++G D++ AQTGTGKT F LP L L P
Sbjct: 12 ILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL--ELLAKGPKV 69
Query: 667 ERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIA 725
L++ PTRELA QI+ V + LK+ V+GG ++ PQ++++ +G IL+A
Sbjct: 70 RANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVA 129
Query: 726 TPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWN 785
TPGRL D ++ ++ + +VLDEADRMLD+GF I+K + RQ ++ SAT++
Sbjct: 130 TPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQNLLFSATFS 189
Query: 786 KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKV 845
+++ +AK + NPV+++V + A TV Q I D +K D L++ + ++ V
Sbjct: 190 TEIRELAKGLVNNPVEISVSPANSTA-RTVEQCIYPADVKKKPDMLVKLVKEGNWQQ--V 246
Query: 846 MVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRG 905
+VFM K + +++ L Q + +++G+ SQ R AL D +G RI VATD+A+RG
Sbjct: 247 LVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARG 306
Query: 906 LDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
+D+P L V+N++ P E+YVHR+GRTG
Sbjct: 307 IDIPQLPQVVNFELPKIAEDYVHRIGRTG 335
>UNIPROTKB|B2C6E9 [details] [associations]
symbol:B2C6E9 "VASA" species:9337 "Trichosurus vulpecula"
[GO:0033391 "chromatoid body" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 EMBL:EU278597 Uniprot:B2C6E9
Length = 704
Score = 604 (217.7 bits), Expect = 1.9e-58, P = 1.9e-58
Identities = 158/459 (34%), Positives = 253/459 (55%)
Query: 2 EELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTP---EQVEA-FRKKNNDISVSVVT 57
EE++A S R + W E + ++ + P+V + P E EA F I+
Sbjct: 194 EEVVAGSGR---NPWKSETEGGESGDIQGPKVTYIPPPPPENEEATFAHYQTGINFDKY- 249
Query: 58 SDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMI 117
D + E P + +F++ + + +T +P+Q PI+++G D++
Sbjct: 250 -DTILVEVSGHDAPPAILTFEET-DLCQTLNNDITKAGYTKLTPVQKYGIPIILAGRDLM 307
Query: 118 GIAQTGTGKTFAFLLPALIHTH---LQTTPISERAGPSVLVMAPTRELATQIEREVNKID 174
AQTG+GKT AFLLP L H + + ++ P +++APTREL QI E K
Sbjct: 308 ACAQTGSGKTAAFLLPILAHMMRDGVTASRFKDQQEPECIIVAPTRELINQIFLEARKFS 367
Query: 175 YKG-LKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEAD 233
+ ++ V +YGG ++ + +I +GC+IL ATPGRL D + + I L + ++VLDEAD
Sbjct: 368 FGTCVRPVVIYGGTQLGHSIRQIMQGCNILCATPGRLMDIIGKEKIGLGQIRYLVLDEAD 427
Query: 234 RMLDLGFEPQINKTSIYIN-PN---RQTVMTSATWNK-DVQRVAKKYMVNPV--KVNVGS 286
RMLD+GF P++ K + P+ RQT+M SAT+ + + + A +++ N V VG
Sbjct: 428 RMLDMGFGPEMKKLISFPGMPSKEQRQTLMFSATFPRGNFKDWAGEFLKNLTICLVAVGQ 487
Query: 287 LDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQY 346
+ A V Q ++ + + K++ L+E N+ EER MVF+ K +++ L CQ
Sbjct: 488 VG-GACSDVQQTVLQVGQYSKREKLVEILRNIGEER--TMVFVETKKKADFIATFL-CQE 543
Query: 347 RKSC-SLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEE 405
+ S S++GD Q +RE AL D G + VAT VA+RGLD+ ++ HVIN+D PS I+E
Sbjct: 544 KISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDE 603
Query: 406 YVHRVGRTGRAGKSGESITLMTRKDWSH-AHEIIPILEE 443
YVHR+GRTGR G +G++I+ + SH A ++ +L +
Sbjct: 604 YVHRIGRTGRCGNTGKAISFFDPEPDSHLAQPLVKVLSD 642
Score = 569 (205.4 bits), Expect = 1.5e-54, P = 1.5e-54
Identities = 151/429 (35%), Positives = 236/429 (55%)
Query: 522 EELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTP---EQVEA-FRKKNNDISVSVVT 577
EE++A S R + W E + ++ + P+V + P E EA F I+
Sbjct: 194 EEVVAGSGR---NPWKSETEGGESGDIQGPKVTYIPPPPPENEEATFAHYQTGINFDKY- 249
Query: 578 SDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMI 637
D + E P + +F++ + + +T +P+Q PI+++G D++
Sbjct: 250 -DTILVEVSGHDAPPAILTFEET-DLCQTLNNDITKAGYTKLTPVQKYGIPIILAGRDLM 307
Query: 638 GIAQTGTGKTFAFLLPALIHTH---LQTTPISERAGPSVLVMAPTRELATQIEREVNKID 694
AQTG+GKT AFLLP L H + + ++ P +++APTREL QI E K
Sbjct: 308 ACAQTGSGKTAAFLLPILAHMMRDGVTASRFKDQQEPECIIVAPTRELINQIFLEARKFS 367
Query: 695 YKG-LKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEAD 753
+ ++ V +YGG +L + +I +GC+IL ATPGRL D + + I L + ++VLDEAD
Sbjct: 368 FGTCVRPVVIYGGTQLGHSIRQIMQGCNILCATPGRLMDIIGKEKIGLGQIRYLVLDEAD 427
Query: 754 RMLDLGFEPQINKTSIYIN-PN---RQTVMTSATWNK-DVQRVAKKYMVNPV--KVNVGS 806
RMLD+GF P++ K + P+ RQT+M SAT+ + + + A +++ N V VG
Sbjct: 428 RMLDMGFGPEMKKLISFPGMPSKEQRQTLMFSATFPRGNFKDWAGEFLKNLTICLVAVGQ 487
Query: 807 LDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQY 866
+ A V Q ++ + + K++ L+E N+ EER MVF+ K +++ L CQ
Sbjct: 488 VG-GACSDVQQTVLQVGQYSKREKLVEILRNIGEER--TMVFVETKKKADFIATFL-CQE 543
Query: 867 RKSC-SLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEE 925
+ S S++GD Q +RE AL D G + VAT VA+RGLD+ ++ HVIN+D PS I+E
Sbjct: 544 KISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDE 603
Query: 926 YVHRVGRTG 934
YVHR+GRTG
Sbjct: 604 YVHRIGRTG 612
>FB|FBgn0015331 [details] [associations]
symbol:abs "abstrakt" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=NAS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0030010
"establishment of cell polarity" evidence=NAS] [GO:0007399 "nervous
system development" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0009653 "anatomical structure morphogenesis"
evidence=NAS] [GO:0006915 "apoptotic process" evidence=NAS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 EMBL:AF212866 EMBL:AF187729
EMBL:AY051752 RefSeq:NP_524220.1 UniGene:Dm.3300
ProteinModelPortal:Q9V3C0 SMR:Q9V3C0 DIP:DIP-21861N IntAct:Q9V3C0
MINT:MINT-341079 STRING:Q9V3C0 PaxDb:Q9V3C0 PRIDE:Q9V3C0
EnsemblMetazoa:FBtr0078967 GeneID:40530 KEGG:dme:Dmel_CG14637
UCSC:CG14637-RA CTD:40530 FlyBase:FBgn0015331 InParanoid:Q9V3C0
OMA:KDQEERS OrthoDB:EOG4KWH7Z PhylomeDB:Q9V3C0 GenomeRNAi:40530
NextBio:819209 Bgee:Q9V3C0 GermOnline:CG14637 Uniprot:Q9V3C0
Length = 619
Score = 602 (217.0 bits), Expect = 3.1e-58, P = 3.1e-58
Identities = 154/453 (33%), Positives = 244/453 (53%)
Query: 6 ALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDEN 65
AL E K + + IK +K + M+ E+ EA R +++ + V +G E
Sbjct: 121 ALMGVAELAKGIQYEQPIKTAWKPPRYIREMSEEEREAVR---HELRILV---EG---ET 171
Query: 66 PDFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGT 124
P P P+ SF++ +P+ IL L P+PIQ Q P +++G D+IGIA TG+
Sbjct: 172 PS---P-PIRSFRE--MKFPKGILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGS 225
Query: 125 GKTFAFLLPALIHTHLQ--TTPISERAGPSVLVMAPTRELATQ----IEREVNKIDYKGL 178
GKT F+LP ++ Q + P GP L++ P+RELA Q I+ + G+
Sbjct: 226 GKTLVFVLPVIMFALEQEYSLPFERNEGPYGLIICPSRELAKQTHEIIQHYSKHLQACGM 285
Query: 179 KAV--CV-YGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRM 235
+ C+ GG + L+ I G HI++ATPGRL D + + + L ++ +DEADRM
Sbjct: 286 PEIRSCLAMGGLPVSEALDVISRGVHIVVATPGRLMDMLDKKILTLDMCRYLCMDEADRM 345
Query: 236 LDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTV 295
+D+GFE + + RQT++ SAT K +Q A+ +V PV +NVG AA+ V
Sbjct: 346 IDMGFEEDVRTIFSFFKGQRQTLLFSATMPKKIQNFARSALVKPVTINVGRAG-AASMNV 404
Query: 296 TQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGD 355
TQ++ + ++ K +L+ D + + V++F +K V + L + ++ +++G
Sbjct: 405 TQQVEYVKQEAKVVYLL---DCLQKTAPPVLIFAEKKQDVDCIHEYLLLKGVEAVAIHGG 461
Query: 356 LSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGR 415
QE+R A++ G + VATDVAS+GLD P++ HVINYD P IE YVHR+GRTGR
Sbjct: 462 KDQEERSRAVDAYRVGKKDVLVATDVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGR 521
Query: 416 AGKSGESITLMTRK-DWSHAHEIIPILEEGGHE 447
+ G + TL+ + + S ++ +L EG E
Sbjct: 522 SNTKGLATTLINKTTEQSVLLDLKHLLIEGKQE 554
Score = 579 (208.9 bits), Expect = 1.2e-55, P = 1.2e-55
Identities = 148/432 (34%), Positives = 232/432 (53%)
Query: 516 DPEPTMEELM---ALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDIS 572
+ E ME + AL E K + + IK +K + M+ E+ EA R +++
Sbjct: 108 EEEKIMESIAQQKALMGVAELAKGIQYEQPIKTAWKPPRYIREMSEEEREAVR---HELR 164
Query: 573 VSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILM 631
+ V +G E P P P+ SF++ +P+ IL L P+PIQ Q P ++
Sbjct: 165 ILV---EG---ETPS---P-PIRSFRE--MKFPKGILNGLAAKGIKNPTPIQVQGLPTVL 212
Query: 632 SGHDMIGIAQTGTGKTFAFLLPALIHTHLQ--TTPISERAGPSVLVMAPTRELATQ---- 685
+G D+IGIA TG+GKT F+LP ++ Q + P GP L++ P+RELA Q
Sbjct: 213 AGRDLIGIAFTGSGKTLVFVLPVIMFALEQEYSLPFERNEGPYGLIICPSRELAKQTHEI 272
Query: 686 IEREVNKIDYKGLKAV--CV-YGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLK 742
I+ + G+ + C+ GG + L+ I G HI++ATPGRL D + + + L
Sbjct: 273 IQHYSKHLQACGMPEIRSCLAMGGLPVSEALDVISRGVHIVVATPGRLMDMLDKKILTLD 332
Query: 743 AVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKV 802
++ +DEADRM+D+GFE + + RQT++ SAT K +Q A+ +V PV +
Sbjct: 333 MCRYLCMDEADRMIDMGFEEDVRTIFSFFKGQRQTLLFSATMPKKIQNFARSALVKPVTI 392
Query: 803 NVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDL 862
NVG AA+ VTQ++ + ++ K +L+ D + + V++F +K V + L
Sbjct: 393 NVGRAG-AASMNVTQQVEYVKQEAKVVYLL---DCLQKTAPPVLIFAEKKQDVDCIHEYL 448
Query: 863 ACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSH 922
+ ++ +++G QE+R A++ G + VATDVAS+GLD P++ HVINYD P
Sbjct: 449 LLKGVEAVAIHGGKDQEERSRAVDAYRVGKKDVLVATDVASKGLDFPNVQHVINYDMPDD 508
Query: 923 IEEYVHRVGRTG 934
IE YVHR+GRTG
Sbjct: 509 IENYVHRIGRTG 520
>UNIPROTKB|Q9KV52 [details] [associations]
symbol:rhlB "ATP-dependent RNA helicase RhlB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0006401 "RNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:EEEWPEK
KO:K03732 ProtClustDB:PRK04837 PIR:C82340 RefSeq:NP_229960.1
ProteinModelPortal:Q9KV52 DNASU:2614975 GeneID:2614975
KEGG:vch:VC0305 PATRIC:20079655 Uniprot:Q9KV52
Length = 438
Score = 602 (217.0 bits), Expect = 3.1e-58, P = 3.1e-58
Identities = 149/358 (41%), Positives = 200/358 (55%)
Query: 74 VTSFKQA-FQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLL 132
+T K A F P+++ LE F +PIQA A P+L+SG D+ G AQTGTGKT AFL
Sbjct: 6 ITEHKFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLT 65
Query: 133 PALIHTHLQTTPISE-RAG--PSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKE 188
HL TTP +E RA P ++MAPTRELA QI + + GLKA YGG+
Sbjct: 66 ATF--NHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGES 123
Query: 189 IEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTS 248
+ QL K++ G ILI T GR+ DF + +L + VVLDEADRM DLGF I
Sbjct: 124 YDKQLAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLF 183
Query: 249 IYI-NP-NRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDE 306
+ P +R ++ SAT + VQ +A ++M NP V V + H + +++ +
Sbjct: 184 RRMPEPKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEP-EQKTGHRIQEELFYPSNEH 242
Query: 307 KKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALE 366
K L + +E D+ ++F K + + LA + L GD+ Q+ RE LE
Sbjct: 243 KMALLQTLIE--EEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILE 300
Query: 367 DITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESIT 424
T G I VATDVA+RGL +P +THV NYD P E+YVHR+GRTGRAG SG SI+
Sbjct: 301 QFTQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSIS 358
Score = 569 (205.4 bits), Expect = 1.5e-54, P = 1.5e-54
Identities = 142/348 (40%), Positives = 192/348 (55%)
Query: 594 VTSFKQA-FQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLL 652
+T K A F P+++ LE F +PIQA A P+L+SG D+ G AQTGTGKT AFL
Sbjct: 6 ITEHKFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLT 65
Query: 653 PALIHTHLQTTPISE-RAG--PSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKE 708
HL TTP +E RA P ++MAPTRELA QI + + GLKA YGG+
Sbjct: 66 ATF--NHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGES 123
Query: 709 LEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTS 768
+ QL K++ G ILI T GR+ DF + +L + VVLDEADRM DLGF I
Sbjct: 124 YDKQLAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLF 183
Query: 769 IYI-NP-NRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDE 826
+ P +R ++ SAT + VQ +A ++M NP V V + H + +++ +
Sbjct: 184 RRMPEPKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEP-EQKTGHRIQEELFYPSNEH 242
Query: 827 KKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALE 886
K L + +E D+ ++F K + + LA + L GD+ Q+ RE LE
Sbjct: 243 KMALLQTLIE--EEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILE 300
Query: 887 DITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
T G I VATDVA+RGL +P +THV NYD P E+YVHR+GRTG
Sbjct: 301 QFTQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTG 348
>TIGR_CMR|VC_0305 [details] [associations]
symbol:VC_0305 "ATP-dependent RNA helicase RhlB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:EEEWPEK
KO:K03732 ProtClustDB:PRK04837 PIR:C82340 RefSeq:NP_229960.1
ProteinModelPortal:Q9KV52 DNASU:2614975 GeneID:2614975
KEGG:vch:VC0305 PATRIC:20079655 Uniprot:Q9KV52
Length = 438
Score = 602 (217.0 bits), Expect = 3.1e-58, P = 3.1e-58
Identities = 149/358 (41%), Positives = 200/358 (55%)
Query: 74 VTSFKQA-FQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLL 132
+T K A F P+++ LE F +PIQA A P+L+SG D+ G AQTGTGKT AFL
Sbjct: 6 ITEHKFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLT 65
Query: 133 PALIHTHLQTTPISE-RAG--PSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKE 188
HL TTP +E RA P ++MAPTRELA QI + + GLKA YGG+
Sbjct: 66 ATF--NHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGES 123
Query: 189 IEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTS 248
+ QL K++ G ILI T GR+ DF + +L + VVLDEADRM DLGF I
Sbjct: 124 YDKQLAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLF 183
Query: 249 IYI-NP-NRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDE 306
+ P +R ++ SAT + VQ +A ++M NP V V + H + +++ +
Sbjct: 184 RRMPEPKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEP-EQKTGHRIQEELFYPSNEH 242
Query: 307 KKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALE 366
K L + +E D+ ++F K + + LA + L GD+ Q+ RE LE
Sbjct: 243 KMALLQTLIE--EEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILE 300
Query: 367 DITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESIT 424
T G I VATDVA+RGL +P +THV NYD P E+YVHR+GRTGRAG SG SI+
Sbjct: 301 QFTQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSIS 358
Score = 569 (205.4 bits), Expect = 1.5e-54, P = 1.5e-54
Identities = 142/348 (40%), Positives = 192/348 (55%)
Query: 594 VTSFKQA-FQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLL 652
+T K A F P+++ LE F +PIQA A P+L+SG D+ G AQTGTGKT AFL
Sbjct: 6 ITEHKFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLT 65
Query: 653 PALIHTHLQTTPISE-RAG--PSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKE 708
HL TTP +E RA P ++MAPTRELA QI + + GLKA YGG+
Sbjct: 66 ATF--NHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGES 123
Query: 709 LEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTS 768
+ QL K++ G ILI T GR+ DF + +L + VVLDEADRM DLGF I
Sbjct: 124 YDKQLAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLF 183
Query: 769 IYI-NP-NRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDE 826
+ P +R ++ SAT + VQ +A ++M NP V V + H + +++ +
Sbjct: 184 RRMPEPKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEP-EQKTGHRIQEELFYPSNEH 242
Query: 827 KKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALE 886
K L + +E D+ ++F K + + LA + L GD+ Q+ RE LE
Sbjct: 243 KMALLQTLIE--EEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILE 300
Query: 887 DITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
T G I VATDVA+RGL +P +THV NYD P E+YVHR+GRTG
Sbjct: 301 QFTQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTG 348
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 600 (216.3 bits), Expect = 5.3e-58, P = 5.3e-58
Identities = 142/349 (40%), Positives = 205/349 (58%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 146
+L L L P+PIQ QA P ++ G D++ AQTGTGKT AF LP LI ++ P
Sbjct: 17 LLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLP-LIQRFIEQ-PWQ 74
Query: 147 ERAGPS---VLVMAPTRELATQIEREVNKIDYKG--LKAVCVYGGKEIEPQLEKIREGCH 201
A LV+ PTRELA Q+ + KG LK V VYGG ++ QL +R G
Sbjct: 75 REANSKEIRALVLVPTRELAQQVLDSLQAYA-KGTELKIVAVYGGTSMKVQLNHLRGGVD 133
Query: 202 ILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTS 261
ILIATPGRL D S+ L V +VLDEADRMLD+GF P + + ++P RQT+ S
Sbjct: 134 ILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFS 193
Query: 262 ATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEE 321
AT++ ++ VA + M +P++V V + A TV Q + +D+ K++ L + + +
Sbjct: 194 ATFDSKIKAVAYRIMRDPIEVQVTPSNSTA-ETVQQMVYPVDKKRKRELLSYLIGSKNWQ 252
Query: 322 RDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDV 381
+ V+VF + A++ +L K+ S+ GD SQ R+ AL+D +G R +ATDV
Sbjct: 253 Q--VLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDV 310
Query: 382 ASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430
A+RGLD+ L V+NYD P E+YVHR+GRTGRAG +G +++L++ +
Sbjct: 311 AARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDE 359
Score = 571 (206.1 bits), Expect = 8.9e-55, P = 8.9e-55
Identities = 137/333 (41%), Positives = 193/333 (57%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 666
+L L L P+PIQ QA P ++ G D++ AQTGTGKT AF LP LI ++ P
Sbjct: 17 LLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLP-LIQRFIEQ-PWQ 74
Query: 667 ERAGPS---VLVMAPTRELATQIEREVNKIDYKG--LKAVCVYGGKELEPQLEKIREGCH 721
A LV+ PTRELA Q+ + KG LK V VYGG ++ QL +R G
Sbjct: 75 REANSKEIRALVLVPTRELAQQVLDSLQAYA-KGTELKIVAVYGGTSMKVQLNHLRGGVD 133
Query: 722 ILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTS 781
ILIATPGRL D S+ L V +VLDEADRMLD+GF P + + ++P RQT+ S
Sbjct: 134 ILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFS 193
Query: 782 ATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEE 841
AT++ ++ VA + M +P++V V + A TV Q + +D+ K++ L + + +
Sbjct: 194 ATFDSKIKAVAYRIMRDPIEVQVTPSNSTA-ETVQQMVYPVDKKRKRELLSYLIGSKNWQ 252
Query: 842 RDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDV 901
+ V+VF + A++ +L K+ S+ GD SQ R+ AL+D +G R +ATDV
Sbjct: 253 Q--VLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDV 310
Query: 902 ASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
A+RGLD+ L V+NYD P E+YVHR+GRTG
Sbjct: 311 AARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTG 343
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 600 (216.3 bits), Expect = 5.3e-58, P = 5.3e-58
Identities = 142/349 (40%), Positives = 205/349 (58%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 146
+L L L P+PIQ QA P ++ G D++ AQTGTGKT AF LP LI ++ P
Sbjct: 17 LLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLP-LIQRFIEQ-PWQ 74
Query: 147 ERAGPS---VLVMAPTRELATQIEREVNKIDYKG--LKAVCVYGGKEIEPQLEKIREGCH 201
A LV+ PTRELA Q+ + KG LK V VYGG ++ QL +R G
Sbjct: 75 REANSKEIRALVLVPTRELAQQVLDSLQAYA-KGTELKIVAVYGGTSMKVQLNHLRGGVD 133
Query: 202 ILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTS 261
ILIATPGRL D S+ L V +VLDEADRMLD+GF P + + ++P RQT+ S
Sbjct: 134 ILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFS 193
Query: 262 ATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEE 321
AT++ ++ VA + M +P++V V + A TV Q + +D+ K++ L + + +
Sbjct: 194 ATFDSKIKAVAYRIMRDPIEVQVTPSNSTA-ETVQQMVYPVDKKRKRELLSYLIGSKNWQ 252
Query: 322 RDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDV 381
+ V+VF + A++ +L K+ S+ GD SQ R+ AL+D +G R +ATDV
Sbjct: 253 Q--VLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDV 310
Query: 382 ASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430
A+RGLD+ L V+NYD P E+YVHR+GRTGRAG +G +++L++ +
Sbjct: 311 AARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDE 359
Score = 571 (206.1 bits), Expect = 8.9e-55, P = 8.9e-55
Identities = 137/333 (41%), Positives = 193/333 (57%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 666
+L L L P+PIQ QA P ++ G D++ AQTGTGKT AF LP LI ++ P
Sbjct: 17 LLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLP-LIQRFIEQ-PWQ 74
Query: 667 ERAGPS---VLVMAPTRELATQIEREVNKIDYKG--LKAVCVYGGKELEPQLEKIREGCH 721
A LV+ PTRELA Q+ + KG LK V VYGG ++ QL +R G
Sbjct: 75 REANSKEIRALVLVPTRELAQQVLDSLQAYA-KGTELKIVAVYGGTSMKVQLNHLRGGVD 133
Query: 722 ILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTS 781
ILIATPGRL D S+ L V +VLDEADRMLD+GF P + + ++P RQT+ S
Sbjct: 134 ILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFS 193
Query: 782 ATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEE 841
AT++ ++ VA + M +P++V V + A TV Q + +D+ K++ L + + +
Sbjct: 194 ATFDSKIKAVAYRIMRDPIEVQVTPSNSTA-ETVQQMVYPVDKKRKRELLSYLIGSKNWQ 252
Query: 842 RDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDV 901
+ V+VF + A++ +L K+ S+ GD SQ R+ AL+D +G R +ATDV
Sbjct: 253 Q--VLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDV 310
Query: 902 ASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
A+RGLD+ L V+NYD P E+YVHR+GRTG
Sbjct: 311 AARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTG 343
>ASPGD|ASPL0000051195 [details] [associations]
symbol:AN1634 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 EMBL:BN001307
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000026 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:P09052
HOGENOM:HOG000268796 OMA:PIRNWKE RefSeq:XP_659238.1
ProteinModelPortal:Q5BCU6 EnsemblFungi:CADANIAT00008272
GeneID:2874876 KEGG:ani:AN1634.2 OrthoDB:EOG4KPXK0 Uniprot:Q5BCU6
Length = 782
Score = 351 (128.6 bits), Expect = 5.9e-58, Sum P(2) = 5.9e-58
Identities = 80/184 (43%), Positives = 109/184 (59%)
Query: 70 IPNPVTSFKQAFQHYPEILRQL-ENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTF 128
+PNP+ S+ ++ P+ L +L + + + P+PIQ A PI M D+IG+A TG+GKT
Sbjct: 341 VPNPMRSWDES--GLPKRLLELVDRVGYKEPTPIQRAAIPIAMQSRDLIGVAVTGSGKTA 398
Query: 129 AFLLPALIHTHLQTTPISE-----RAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVC 182
AFLLP L + + I E GP +V+APTRELA QIE E K + G V
Sbjct: 399 AFLLPLLCYI-AELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKFTEPLGFNVVS 457
Query: 183 VYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEP 242
+ GG E Q +R G I+IATPGRL D + R + L +V++DEADRM+DLGFE
Sbjct: 458 IVGGHSFEEQAYSLRNGAEIIIATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEE 517
Query: 243 QINK 246
+NK
Sbjct: 518 PVNK 521
Score = 351 (128.6 bits), Expect = 3.2e-53, Sum P(2) = 3.2e-53
Identities = 80/184 (43%), Positives = 109/184 (59%)
Query: 590 IPNPVTSFKQAFQHYPEILRQL-ENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTF 648
+PNP+ S+ ++ P+ L +L + + + P+PIQ A PI M D+IG+A TG+GKT
Sbjct: 341 VPNPMRSWDES--GLPKRLLELVDRVGYKEPTPIQRAAIPIAMQSRDLIGVAVTGSGKTA 398
Query: 649 AFLLPALIHTHLQTTPISE-----RAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVC 702
AFLLP L + + I E GP +V+APTRELA QIE E K + G V
Sbjct: 399 AFLLPLLCYI-AELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKFTEPLGFNVVS 457
Query: 703 VYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEP 762
+ GG E Q +R G I+IATPGRL D + R + L +V++DEADRM+DLGFE
Sbjct: 458 IVGGHSFEEQAYSLRNGAEIIIATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEE 517
Query: 763 QINK 766
+NK
Sbjct: 518 PVNK 521
Score = 330 (121.2 bits), Expect = 5.9e-58, Sum P(2) = 5.9e-58
Identities = 73/177 (41%), Positives = 111/177 (62%)
Query: 255 RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKI-IILDEDEKKDWLME 313
RQT+M +AT V+R+A+KY+ P V +GS A TV Q++ +I ED++K L E
Sbjct: 555 RQTMMYTATMPTAVERIARKYLRRPAIVTIGSAG-EAVDTVEQRVEMIAGEDKRKKRLGE 613
Query: 314 FFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYA 373
+ D R ++VF+ K + A++ ++ S +L+G +QE RE AL + +G
Sbjct: 614 ILSSGDF-RPPIIVFVNIKRNCDAIAREIKQWGFSSVTLHGSKTQEQREAALASVRNGST 672
Query: 374 RICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430
+ VATD+A RG+DVPD++ VIN++ + IE Y HR+GRTGRAGKSG +IT + +D
Sbjct: 673 DVLVATDLAGRGIDVPDVSLVINFNMATSIESYTHRIGRTGRAGKSGVAITFLGNED 729
Score = 285 (105.4 bits), Expect = 3.2e-53, Sum P(2) = 3.2e-53
Identities = 64/161 (39%), Positives = 99/161 (61%)
Query: 775 RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKI-IILDEDEKKDWLME 833
RQT+M +AT V+R+A+KY+ P V +GS A TV Q++ +I ED++K L E
Sbjct: 555 RQTMMYTATMPTAVERIARKYLRRPAIVTIGSAG-EAVDTVEQRVEMIAGEDKRKKRLGE 613
Query: 834 FFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYA 893
+ D R ++VF+ K + A++ ++ S +L+G +QE RE AL + +G
Sbjct: 614 ILSSGDF-RPPIIVFVNIKRNCDAIAREIKQWGFSSVTLHGSKTQEQREAALASVRNGST 672
Query: 894 RICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
+ VATD+A RG+DVPD++ VIN++ + IE Y HR+GRTG
Sbjct: 673 DVLVATDLAGRGIDVPDVSLVINFNMATSIESYTHRIGRTG 713
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 598 (215.6 bits), Expect = 8.9e-58, P = 8.9e-58
Identities = 138/374 (36%), Positives = 219/374 (58%)
Query: 86 EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIH----THL- 140
++L+ ++ + +PIQ +A P++ G D++ AQTGTGKT AF LP L H
Sbjct: 11 DLLKAVKACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPILDAIAKANHAA 70
Query: 141 --QTTPISERA-------GPSV--LVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKE 188
TT E + G ++ L++ PTRELA Q+ + + Y +K+ VYGG +
Sbjct: 71 KSSTTSTDENSAEEKSASGQAIRALILTPTRELANQVADNIKQFSQYLPIKSGVVYGGGK 130
Query: 189 IEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTS 248
+ Q + +++G +L+ATPGRL + ++ ++DL V F+VLDEADRMLD+GF I K
Sbjct: 131 MASQTKMLKQGLDVLVATPGRLLEHLALRNVDLSQVKFLVLDEADRMLDMGFLTDIEKLL 190
Query: 249 IYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKK 308
+ + QT+M SAT++ V+ +A + + +P ++V S + + + Q + + E+ K+
Sbjct: 191 LAVKHKHQTLMFSATFSDRVKSLANQLLKSPKTISV-SKENTTSGKIKQAVYWVTEERKR 249
Query: 309 DWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDI 368
+ L E + ++ V+VF G K S + ++ +L K+ +GD +Q R ALE
Sbjct: 250 ELLSELIGVNNWQQ--VLVFAGTKESANTLAKELKLDGIKAALCHGDKTQGARNKALEQF 307
Query: 369 TSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTR 428
+ G R+ VATDVA+RGLD+PDL V+N+ P E+YVHRVGRTGRAGKSG +I+L++
Sbjct: 308 SEGKVRVLVATDVAARGLDIPDLAFVVNFHLPFLPEDYVHRVGRTGRAGKSGTAISLVSP 367
Query: 429 KDWSHAHEIIPILE 442
KD I ++E
Sbjct: 368 KDERFLENIEQLIE 381
Score = 472 (171.2 bits), Expect = 3.7e-54, Sum P(2) = 3.7e-54
Identities = 100/262 (38%), Positives = 160/262 (61%)
Query: 674 LVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLND 732
L++ PTRELA Q+ + + Y +K+ VYGG ++ Q + +++G +L+ATPGRL +
Sbjct: 95 LILTPTRELANQVADNIKQFSQYLPIKSGVVYGGGKMASQTKMLKQGLDVLVATPGRLLE 154
Query: 733 FVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVA 792
++ ++DL V F+VLDEADRMLD+GF I K + + QT+M SAT++ V+ +A
Sbjct: 155 HLALRNVDLSQVKFLVLDEADRMLDMGFLTDIEKLLLAVKHKHQTLMFSATFSDRVKSLA 214
Query: 793 KKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRK 852
+ + +P ++V S + + + Q + + E+ K++ L E + ++ V+VF G K
Sbjct: 215 NQLLKSPKTISV-SKENTTSGKIKQAVYWVTEERKRELLSELIGVNNWQQ--VLVFAGTK 271
Query: 853 ASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLT 912
S + ++ +L K+ +GD +Q R ALE + G R+ VATDVA+RGLD+PDL
Sbjct: 272 ESANTLAKELKLDGIKAALCHGDKTQGARNKALEQFSEGKVRVLVATDVAARGLDIPDLA 331
Query: 913 HVINYDFPSHIEEYVHRVGRTG 934
V+N+ P E+YVHRVGRTG
Sbjct: 332 FVVNFHLPFLPEDYVHRVGRTG 353
Score = 122 (48.0 bits), Expect = 3.7e-54, Sum P(2) = 3.7e-54
Identities = 34/103 (33%), Positives = 54/103 (52%)
Query: 606 EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIH----THL- 660
++L+ ++ + +PIQ +A P++ G D++ AQTGTGKT AF LP L H
Sbjct: 11 DLLKAVKACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPILDAIAKANHAA 70
Query: 661 --QTTPISERA-------GPSV--LVMAPTRELATQIEREVNK 692
TT E + G ++ L++ PTRELA Q+ + +
Sbjct: 71 KSSTTSTDENSAEEKSASGQAIRALILTPTRELANQVADNIKQ 113
>UNIPROTKB|Q9KLE2 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000910 "cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 597 (215.2 bits), Expect = 1.1e-57, P = 1.1e-57
Identities = 134/343 (39%), Positives = 197/343 (57%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 146
IL L + F +P+PIQA A P+L+ G D +G AQTGTGKT AF LP L +L
Sbjct: 37 ILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLS----- 91
Query: 147 ERAGPSVLVMAPTRELATQIEREVNKI--DYKGLKAVCVYGGKEIEPQLEKIREGCHILI 204
+ P +VMAPTRELA Q+ E+ + + KGLK + +YGG I Q+ ++ G HI++
Sbjct: 92 -QYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVV 150
Query: 205 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 264
TPGR+ D ++R + L +LDEAD ML +GF + + Q V+ SAT
Sbjct: 151 GTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATM 210
Query: 265 NKDVQRVAKKYMVNPVKVNV-GSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERD 323
V+ + ++++ NP V+V GS A V Q+ ++ EK + + + EE D
Sbjct: 211 PPMVKEIVERFLRNPECVDVAGSNQTVAK--VEQQYWVVKGVEKDEAMARLLET--EETD 266
Query: 324 KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 383
+VF+ + ++ L + K+ +L+GD+ Q RE ++ I G I VATDV +
Sbjct: 267 ASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVA 326
Query: 384 RGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLM 426
RGLDVP +THV NYD P +E Y+HR+GRTGRAG+ G++I L+
Sbjct: 327 RGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLV 369
Score = 562 (202.9 bits), Expect = 8.8e-54, P = 8.8e-54
Identities = 127/331 (38%), Positives = 187/331 (56%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 666
IL L + F +P+PIQA A P+L+ G D +G AQTGTGKT AF LP L +L
Sbjct: 37 ILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLS----- 91
Query: 667 ERAGPSVLVMAPTRELATQIEREVNKI--DYKGLKAVCVYGGKELEPQLEKIREGCHILI 724
+ P +VMAPTRELA Q+ E+ + + KGLK + +YGG + Q+ ++ G HI++
Sbjct: 92 -QYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVV 150
Query: 725 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 784
TPGR+ D ++R + L +LDEAD ML +GF + + Q V+ SAT
Sbjct: 151 GTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATM 210
Query: 785 NKDVQRVAKKYMVNPVKVNV-GSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERD 843
V+ + ++++ NP V+V GS A V Q+ ++ EK + + + EE D
Sbjct: 211 PPMVKEIVERFLRNPECVDVAGSNQTVAK--VEQQYWVVKGVEKDEAMARLLET--EETD 266
Query: 844 KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 903
+VF+ + ++ L + K+ +L+GD+ Q RE ++ I G I VATDV +
Sbjct: 267 ASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVA 326
Query: 904 RGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
RGLDVP +THV NYD P +E Y+HR+GRTG
Sbjct: 327 RGLDVPRITHVYNYDIPFDVESYIHRIGRTG 357
>TIGR_CMR|VC_A0804 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0016070 "RNA metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 597 (215.2 bits), Expect = 1.1e-57, P = 1.1e-57
Identities = 134/343 (39%), Positives = 197/343 (57%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 146
IL L + F +P+PIQA A P+L+ G D +G AQTGTGKT AF LP L +L
Sbjct: 37 ILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLS----- 91
Query: 147 ERAGPSVLVMAPTRELATQIEREVNKI--DYKGLKAVCVYGGKEIEPQLEKIREGCHILI 204
+ P +VMAPTRELA Q+ E+ + + KGLK + +YGG I Q+ ++ G HI++
Sbjct: 92 -QYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVV 150
Query: 205 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 264
TPGR+ D ++R + L +LDEAD ML +GF + + Q V+ SAT
Sbjct: 151 GTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATM 210
Query: 265 NKDVQRVAKKYMVNPVKVNV-GSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERD 323
V+ + ++++ NP V+V GS A V Q+ ++ EK + + + EE D
Sbjct: 211 PPMVKEIVERFLRNPECVDVAGSNQTVAK--VEQQYWVVKGVEKDEAMARLLET--EETD 266
Query: 324 KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 383
+VF+ + ++ L + K+ +L+GD+ Q RE ++ I G I VATDV +
Sbjct: 267 ASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVA 326
Query: 384 RGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLM 426
RGLDVP +THV NYD P +E Y+HR+GRTGRAG+ G++I L+
Sbjct: 327 RGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLV 369
Score = 562 (202.9 bits), Expect = 8.8e-54, P = 8.8e-54
Identities = 127/331 (38%), Positives = 187/331 (56%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 666
IL L + F +P+PIQA A P+L+ G D +G AQTGTGKT AF LP L +L
Sbjct: 37 ILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLS----- 91
Query: 667 ERAGPSVLVMAPTRELATQIEREVNKI--DYKGLKAVCVYGGKELEPQLEKIREGCHILI 724
+ P +VMAPTRELA Q+ E+ + + KGLK + +YGG + Q+ ++ G HI++
Sbjct: 92 -QYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVV 150
Query: 725 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 784
TPGR+ D ++R + L +LDEAD ML +GF + + Q V+ SAT
Sbjct: 151 GTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATM 210
Query: 785 NKDVQRVAKKYMVNPVKVNV-GSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERD 843
V+ + ++++ NP V+V GS A V Q+ ++ EK + + + EE D
Sbjct: 211 PPMVKEIVERFLRNPECVDVAGSNQTVAK--VEQQYWVVKGVEKDEAMARLLET--EETD 266
Query: 844 KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 903
+VF+ + ++ L + K+ +L+GD+ Q RE ++ I G I VATDV +
Sbjct: 267 ASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVA 326
Query: 904 RGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
RGLDVP +THV NYD P +E Y+HR+GRTG
Sbjct: 327 RGLDVPRITHVYNYDIPFDVESYIHRIGRTG 357
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 596 (214.9 bits), Expect = 1.5e-57, P = 1.5e-57
Identities = 134/346 (38%), Positives = 203/346 (58%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI- 145
++R +E +T P+P+Q +A P ++ G D++ AQTGTGKT F LP L P
Sbjct: 12 LVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDK 71
Query: 146 SERAGPS---VLVMAPTRELATQIEREVNKIDYKGLKAV--CVYGGKEIEPQLEKIREGC 200
S+R GP VLV+ PTRELA Q+ E K+ + LK V C++GG + PQ++ + G
Sbjct: 72 SQRHGPRQPRVLVLTPTRELAAQVH-ESFKLYARDLKFVSACIFGGVGMNPQVQAMSRGV 130
Query: 201 HILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMT 260
+L+A PGRL D + S+DL V +VLDEADRMLD+GF + K + RQ ++
Sbjct: 131 DVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLF 190
Query: 261 SATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDE 320
SAT++ D+ +A K + NP ++ V + + Q++ L + K+ L
Sbjct: 191 SATFSNDITSLAGKLLHNPERIEVTPPN-TTVERIEQRVFRLAANHKRSLLAHLITVGAW 249
Query: 321 ERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATD 380
E+ V+VF K + ++ L + +++G+ SQ R AL D +G RI VATD
Sbjct: 250 EQ--VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATD 307
Query: 381 VASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLM 426
+A+RGLD+ L HV+N++ P+ E+YVHR+GRTGRAG+SGE+I+L+
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353
Score = 554 (200.1 bits), Expect = 6.7e-53, P = 6.7e-53
Identities = 126/334 (37%), Positives = 191/334 (57%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI- 665
++R +E +T P+P+Q +A P ++ G D++ AQTGTGKT F LP L P
Sbjct: 12 LVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDK 71
Query: 666 SERAGPS---VLVMAPTRELATQIEREVNKIDYKGLKAV--CVYGGKELEPQLEKIREGC 720
S+R GP VLV+ PTRELA Q+ E K+ + LK V C++GG + PQ++ + G
Sbjct: 72 SQRHGPRQPRVLVLTPTRELAAQVH-ESFKLYARDLKFVSACIFGGVGMNPQVQAMSRGV 130
Query: 721 HILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMT 780
+L+A PGRL D + S+DL V +VLDEADRMLD+GF + K + RQ ++
Sbjct: 131 DVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLF 190
Query: 781 SATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDE 840
SAT++ D+ +A K + NP ++ V + + Q++ L + K+ L
Sbjct: 191 SATFSNDITSLAGKLLHNPERIEVTPPN-TTVERIEQRVFRLAANHKRSLLAHLITVGAW 249
Query: 841 ERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATD 900
E+ V+VF K + ++ L + +++G+ SQ R AL D +G RI VATD
Sbjct: 250 EQ--VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATD 307
Query: 901 VASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
+A+RGLD+ L HV+N++ P+ E+YVHR+GRTG
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTG 341
>ZFIN|ZDB-GENE-030131-1927 [details] [associations]
symbol:ddx41 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490
ZFIN:ZDB-GENE-030131-1927 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
EMBL:CABZ01072950 EMBL:CABZ01072951 EMBL:CABZ01072952
IPI:IPI00961669 Ensembl:ENSDART00000061987 Bgee:F1QQ09
Uniprot:F1QQ09
Length = 473
Score = 595 (214.5 bits), Expect = 1.9e-57, P = 1.9e-57
Identities = 138/371 (37%), Positives = 212/371 (57%)
Query: 70 IPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTF 128
IP P+ SF++ +P+ IL+ L+ P+PIQ Q P ++SG DMIGIA TG+GKT
Sbjct: 32 IPAPIKSFRE--MKFPQAILKGLKKKGIVHPTPIQIQGIPTILSGRDMIGIAFTGSGKTL 89
Query: 129 AFLLPALIHTHLQTT--PISERAGPSVLVMAPTRELATQ-----IEREVNKIDYKGLK-- 179
F LP ++ Q P +R GP L++ P+ +A IE ++ +G
Sbjct: 90 VFTLPIIMFCLEQEKRLPFCKREGPYGLIICPSVNVAKHTHHGIIEYYCKLLEDEGAPQM 149
Query: 180 --AVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLD 237
A+C+ GG ++ Q+E ++ +ATPGRL D +++ + L ++ LDEADRM+D
Sbjct: 150 RCALCI-GGMSVKEQMEVVK------LATPGRLMDLLNKKMVSLDICRYLALDEADRMID 202
Query: 238 LGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQ 297
+GFE I Y RQT++ SAT K +Q AK +V P+ +NVG AA+ V Q
Sbjct: 203 MGFEEDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPITINVGRAG-AASLDVIQ 261
Query: 298 KIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLS 357
++ + E+ K +L+E + + V++F +KA V A+ L + ++ +++G
Sbjct: 262 EVEYVKEEAKMVYLLEC---LQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKD 318
Query: 358 QEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAG 417
QE+R A+E G + VATDVAS+GLD P + HV+NYD P IE YVHR+GRTGR+G
Sbjct: 319 QEERTKAIEAFKEGKKDVLVATDVASKGLDFPAIQHVVNYDMPEEIENYVHRIGRTGRSG 378
Query: 418 KSGESITLMTR 428
K+G + T + +
Sbjct: 379 KTGIATTFINK 389
Score = 564 (203.6 bits), Expect = 5.3e-54, P = 5.3e-54
Identities = 133/357 (37%), Positives = 202/357 (56%)
Query: 590 IPNPVTSFKQAFQHYPE-ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTF 648
IP P+ SF++ +P+ IL+ L+ P+PIQ Q P ++SG DMIGIA TG+GKT
Sbjct: 32 IPAPIKSFRE--MKFPQAILKGLKKKGIVHPTPIQIQGIPTILSGRDMIGIAFTGSGKTL 89
Query: 649 AFLLPALIHTHLQTT--PISERAGPSVLVMAPTRELATQ-----IEREVNKIDYKGLK-- 699
F LP ++ Q P +R GP L++ P+ +A IE ++ +G
Sbjct: 90 VFTLPIIMFCLEQEKRLPFCKREGPYGLIICPSVNVAKHTHHGIIEYYCKLLEDEGAPQM 149
Query: 700 --AVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLD 757
A+C+ GG ++ Q+E ++ +ATPGRL D +++ + L ++ LDEADRM+D
Sbjct: 150 RCALCI-GGMSVKEQMEVVK------LATPGRLMDLLNKKMVSLDICRYLALDEADRMID 202
Query: 758 LGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQ 817
+GFE I Y RQT++ SAT K +Q AK +V P+ +NVG AA+ V Q
Sbjct: 203 MGFEEDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPITINVGRAG-AASLDVIQ 261
Query: 818 KIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLS 877
++ + E+ K +L+E + + V++F +KA V A+ L + ++ +++G
Sbjct: 262 EVEYVKEEAKMVYLLEC---LQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKD 318
Query: 878 QEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
QE+R A+E G + VATDVAS+GLD P + HV+NYD P IE YVHR+GRTG
Sbjct: 319 QEERTKAIEAFKEGKKDVLVATDVASKGLDFPAIQHVVNYDMPEEIENYVHRIGRTG 375
>TAIR|locus:2057640 [details] [associations]
symbol:AT2G33730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:U78721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE EMBL:AY065194 EMBL:AY093244 IPI:IPI00525282 PIR:H84748
RefSeq:NP_180929.1 UniGene:At.27506 ProteinModelPortal:P93008
SMR:P93008 STRING:P93008 PaxDb:P93008 PRIDE:P93008
EnsemblPlants:AT2G33730.1 GeneID:817938 KEGG:ath:AT2G33730
GeneFarm:938 TAIR:At2g33730 InParanoid:P93008 PhylomeDB:P93008
ProtClustDB:CLSN2683508 Genevestigator:P93008 GermOnline:AT2G33730
Uniprot:P93008
Length = 733
Score = 568 (205.0 bits), Expect = 2.3e-57, Sum P(2) = 2.3e-57
Identities = 132/304 (43%), Positives = 180/304 (59%)
Query: 146 SERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKEIEPQLEKIREGCHILI 204
+E GP +VMAPTRELA QIE E K Y G + + GG+ IE Q KI +GC I+I
Sbjct: 385 NETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVI 444
Query: 205 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT-----SIYINPN----- 254
ATPGRL D + R L ++VVLDEADRM+D+GFEPQ+ S + P
Sbjct: 445 ATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEEE 504
Query: 255 -------RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEK 307
R T M SAT V+R+A+KY+ NPV V +G+ T ++Q +I++ E EK
Sbjct: 505 LDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAG-KTTDLISQHVIMMKESEK 563
Query: 308 KDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDL-ACQYRKSCSLYGDLSQEDREIALE 366
L + D + E+ +VF+ K + +++ +L YR + +L+G SQE REI+LE
Sbjct: 564 FFRLQKLLDELGEKT--AIVFVNTKKNCDSIAKNLDKAGYRVT-TLHGGKSQEQREISLE 620
Query: 367 DITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLM 426
+ + VATDV RG+D+PD+ HVINYD P HIE Y HR+GRTGRAGKSG + + +
Sbjct: 621 GFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSFL 680
Query: 427 TRKD 430
T D
Sbjct: 681 TLHD 684
Score = 527 (190.6 bits), Expect = 2.9e-50, Sum P(2) = 2.9e-50
Identities = 123/288 (42%), Positives = 169/288 (58%)
Query: 666 SERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKELEPQLEKIREGCHILI 724
+E GP +VMAPTRELA QIE E K Y G + + GG+ +E Q KI +GC I+I
Sbjct: 385 NETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVI 444
Query: 725 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT-----SIYINPN----- 774
ATPGRL D + R L ++VVLDEADRM+D+GFEPQ+ S + P
Sbjct: 445 ATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEEE 504
Query: 775 -------RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEK 827
R T M SAT V+R+A+KY+ NPV V +G+ T ++Q +I++ E EK
Sbjct: 505 LDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAG-KTTDLISQHVIMMKESEK 563
Query: 828 KDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDL-ACQYRKSCSLYGDLSQEDREIALE 886
L + D + E+ +VF+ K + +++ +L YR + +L+G SQE REI+LE
Sbjct: 564 FFRLQKLLDELGEKT--AIVFVNTKKNCDSIAKNLDKAGYRVT-TLHGGKSQEQREISLE 620
Query: 887 DITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
+ + VATDV RG+D+PD+ HVINYD P HIE Y HR+GRTG
Sbjct: 621 GFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTG 668
Score = 387 (141.3 bits), Expect = 1.7e-32, P = 1.7e-32
Identities = 85/180 (47%), Positives = 117/180 (65%)
Query: 69 QIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTF 128
+IP P+ S++++ + E+L+ +E + PSPIQ A P+ + D+IGIA+TG+GKT
Sbjct: 307 RIPRPMRSWEES-KLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTA 365
Query: 129 AFLLPALIHTHLQTTPISER---AGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVY 184
AF+LP L + + P+SE GP +VMAPTRELA QIE E K Y G + +
Sbjct: 366 AFVLPMLAYIS-RLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIV 424
Query: 185 GGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQI 244
GG+ IE Q KI +GC I+IATPGRL D + R L ++VVLDEADRM+D+GFEPQ+
Sbjct: 425 GGQSIEEQGLKITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQV 484
Score = 385 (140.6 bits), Expect = 1.2e-32, Sum P(2) = 1.2e-32
Identities = 84/180 (46%), Positives = 117/180 (65%)
Query: 589 QIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTF 648
+IP P+ S++++ + E+L+ +E + PSPIQ A P+ + D+IGIA+TG+GKT
Sbjct: 307 RIPRPMRSWEES-KLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTA 365
Query: 649 AFLLPALIHTHLQTTPISER---AGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVY 704
AF+LP L + + P+SE GP +VMAPTRELA QIE E K Y G + +
Sbjct: 366 AFVLPMLAYIS-RLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIV 424
Query: 705 GGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQI 764
GG+ +E Q KI +GC I+IATPGRL D + R L ++VVLDEADRM+D+GFEPQ+
Sbjct: 425 GGQSIEEQGLKITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQV 484
Score = 51 (23.0 bits), Expect = 2.3e-57, Sum P(2) = 2.3e-57
Identities = 23/98 (23%), Positives = 43/98 (43%)
Query: 9 DRKERDKWAREPKIIKNVYKE-DPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPD 67
DR+ERD REP +N KE + EV +VE ++ + + + + P
Sbjct: 119 DRRERD---REPDR-RNREKEREEEVKAREKARVEKLVEREKEKELDAIKEQYLGGKKPK 174
Query: 68 FQIPNPVTSFKQAF--QHYPEILRQLENLSFTTPSPIQ 103
++ P F+ +F ++ + R + N+ + P Q
Sbjct: 175 KRVIRPSEKFRFSFDWENTEDTSRDM-NVLYQNPHEAQ 211
Score = 51 (23.0 bits), Expect = 2.9e-50, Sum P(2) = 2.9e-50
Identities = 23/98 (23%), Positives = 43/98 (43%)
Query: 529 DRKERDKWAREPKIIKNVYKE-DPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPD 587
DR+ERD REP +N KE + EV +VE ++ + + + + P
Sbjct: 119 DRRERD---REPDR-RNREKEREEEVKAREKARVEKLVEREKEKELDAIKEQYLGGKKPK 174
Query: 588 FQIPNPVTSFKQAF--QHYPEILRQLENLSFTTPSPIQ 623
++ P F+ +F ++ + R + N+ + P Q
Sbjct: 175 KRVIRPSEKFRFSFDWENTEDTSRDM-NVLYQNPHEAQ 211
>GENEDB_PFALCIPARUM|PFE0430w [details] [associations]
symbol:PFE0430w "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K12811
RefSeq:XP_001351645.1 ProteinModelPortal:Q8I416 IntAct:Q8I416
MINT:MINT-1560531 EnsemblProtists:PFE0430w:mRNA GeneID:812854
KEGG:pfa:PFE0430w EuPathDB:PlasmoDB:PF3D7_0508700
HOGENOM:HOG000284107 ProtClustDB:CLSZ2433224 Uniprot:Q8I416
Length = 1490
Score = 618 (222.6 bits), Expect = 3.2e-57, Sum P(2) = 3.2e-57
Identities = 150/427 (35%), Positives = 233/427 (54%)
Query: 22 IIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAF 81
I KN+Y + E+ NM V+ FRK N +I V G+ P PV F Q
Sbjct: 682 IKKNIYVQVKEITNMKDSDVDMFRKNNGNIIVR-----GK-------NCPRPVQYFYQC- 728
Query: 82 QHYP-EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHL 140
P +IL+ LE +F IQ Q P LM G D+I IA+TG+GKT ++L P + H L
Sbjct: 729 -GLPSKILQILEKKNFKKMYNIQMQTIPALMCGRDVIAIAETGSGKTLSYLFPVIRHV-L 786
Query: 141 QTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG--LKAVCVYGGKEIEPQLEKIRE 198
P+ GP +++ PTREL+ Q++ E KI K ++ + VYGG I QL+ +++
Sbjct: 787 HQEPLRNNDGPISIILTPTRELSIQVKNEA-KIYCKAVNIEILAVYGGSNIARQLKVLKK 845
Query: 199 GCHILIATPGRLNDF--VSRASI-DLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNR 255
G IL+ TPGR+ D +S + +L VSFVVLDEADR+LDLGFE QI ++
Sbjct: 846 GVEILVGTPGRIIDILTISNCKVTNLNRVSFVVLDEADRLLDLGFESQIYNILRNCRKDK 905
Query: 256 QTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFF 315
QT M SAT+ +Q +AKK + P+++ VG + + Q + I++E +K L++
Sbjct: 906 QTAMISATFPNYIQNMAKKLLYKPIEIIVGEKG-KTNNNIYQFVEIIEESKKVFRLLKLL 964
Query: 316 DNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARI 375
+ V++F+ ++ + +L L+G Q DR+ LE ++
Sbjct: 965 GEWIKY-GLVLIFVNKQIEADLLYLELYKYDYNLLVLHGGQDQTDRQFTLEKFKKEENKV 1023
Query: 376 CVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAH 435
+AT V +RG+D+ ++ VINY P HIE+Y+HR+GRTGR+ G + T + +++ A+
Sbjct: 1024 LIATSVMARGIDIKNIILVINYQCPDHIEDYIHRIGRTGRSNNIGYAYTFILPNEYTKAY 1083
Query: 436 EIIPILE 442
+I +L+
Sbjct: 1084 DIYNLLK 1090
Score = 585 (211.0 bits), Expect = 3.0e-53, Sum P(2) = 3.0e-53
Identities = 143/399 (35%), Positives = 217/399 (54%)
Query: 542 IIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAF 601
I KN+Y + E+ NM V+ FRK N +I V G+ P PV F Q
Sbjct: 682 IKKNIYVQVKEITNMKDSDVDMFRKNNGNIIVR-----GK-------NCPRPVQYFYQC- 728
Query: 602 QHYP-EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHL 660
P +IL+ LE +F IQ Q P LM G D+I IA+TG+GKT ++L P + H L
Sbjct: 729 -GLPSKILQILEKKNFKKMYNIQMQTIPALMCGRDVIAIAETGSGKTLSYLFPVIRHV-L 786
Query: 661 QTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG--LKAVCVYGGKELEPQLEKIRE 718
P+ GP +++ PTREL+ Q++ E KI K ++ + VYGG + QL+ +++
Sbjct: 787 HQEPLRNNDGPISIILTPTRELSIQVKNEA-KIYCKAVNIEILAVYGGSNIARQLKVLKK 845
Query: 719 GCHILIATPGRLNDF--VSRASI-DLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNR 775
G IL+ TPGR+ D +S + +L VSFVVLDEADR+LDLGFE QI ++
Sbjct: 846 GVEILVGTPGRIIDILTISNCKVTNLNRVSFVVLDEADRLLDLGFESQIYNILRNCRKDK 905
Query: 776 QTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFF 835
QT M SAT+ +Q +AKK + P+++ VG + + Q + I++E +K L++
Sbjct: 906 QTAMISATFPNYIQNMAKKLLYKPIEIIVGEKG-KTNNNIYQFVEIIEESKKVFRLLKLL 964
Query: 836 DNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARI 895
+ V++F+ ++ + +L L+G Q DR+ LE ++
Sbjct: 965 GEWIKY-GLVLIFVNKQIEADLLYLELYKYDYNLLVLHGGQDQTDRQFTLEKFKKEENKV 1023
Query: 896 CVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
+AT V +RG+D+ ++ VINY P HIE+Y+HR+GRTG
Sbjct: 1024 LIATSVMARGIDIKNIILVINYQCPDHIEDYIHRIGRTG 1062
Score = 47 (21.6 bits), Expect = 3.2e-57, Sum P(2) = 3.2e-57
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 18 REPKI-IKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQI 62
RE I I + KE+ E+ ++++ + K N +V V+T + +
Sbjct: 321 REKSININKISKENQEICEENKKEIQ--KVKENMSNVKVITENNNL 364
Score = 47 (21.6 bits), Expect = 3.0e-53, Sum P(2) = 3.0e-53
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 538 REPKI-IKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQI 582
RE I I + KE+ E+ ++++ + K N +V V+T + +
Sbjct: 321 REKSININKISKENQEICEENKKEIQ--KVKENMSNVKVITENNNL 364
>UNIPROTKB|Q8I416 [details] [associations]
symbol:PFE0430w "ATP-dependent RNA Helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K12811
RefSeq:XP_001351645.1 ProteinModelPortal:Q8I416 IntAct:Q8I416
MINT:MINT-1560531 EnsemblProtists:PFE0430w:mRNA GeneID:812854
KEGG:pfa:PFE0430w EuPathDB:PlasmoDB:PF3D7_0508700
HOGENOM:HOG000284107 ProtClustDB:CLSZ2433224 Uniprot:Q8I416
Length = 1490
Score = 618 (222.6 bits), Expect = 3.2e-57, Sum P(2) = 3.2e-57
Identities = 150/427 (35%), Positives = 233/427 (54%)
Query: 22 IIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAF 81
I KN+Y + E+ NM V+ FRK N +I V G+ P PV F Q
Sbjct: 682 IKKNIYVQVKEITNMKDSDVDMFRKNNGNIIVR-----GK-------NCPRPVQYFYQC- 728
Query: 82 QHYP-EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHL 140
P +IL+ LE +F IQ Q P LM G D+I IA+TG+GKT ++L P + H L
Sbjct: 729 -GLPSKILQILEKKNFKKMYNIQMQTIPALMCGRDVIAIAETGSGKTLSYLFPVIRHV-L 786
Query: 141 QTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG--LKAVCVYGGKEIEPQLEKIRE 198
P+ GP +++ PTREL+ Q++ E KI K ++ + VYGG I QL+ +++
Sbjct: 787 HQEPLRNNDGPISIILTPTRELSIQVKNEA-KIYCKAVNIEILAVYGGSNIARQLKVLKK 845
Query: 199 GCHILIATPGRLNDF--VSRASI-DLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNR 255
G IL+ TPGR+ D +S + +L VSFVVLDEADR+LDLGFE QI ++
Sbjct: 846 GVEILVGTPGRIIDILTISNCKVTNLNRVSFVVLDEADRLLDLGFESQIYNILRNCRKDK 905
Query: 256 QTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFF 315
QT M SAT+ +Q +AKK + P+++ VG + + Q + I++E +K L++
Sbjct: 906 QTAMISATFPNYIQNMAKKLLYKPIEIIVGEKG-KTNNNIYQFVEIIEESKKVFRLLKLL 964
Query: 316 DNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARI 375
+ V++F+ ++ + +L L+G Q DR+ LE ++
Sbjct: 965 GEWIKY-GLVLIFVNKQIEADLLYLELYKYDYNLLVLHGGQDQTDRQFTLEKFKKEENKV 1023
Query: 376 CVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAH 435
+AT V +RG+D+ ++ VINY P HIE+Y+HR+GRTGR+ G + T + +++ A+
Sbjct: 1024 LIATSVMARGIDIKNIILVINYQCPDHIEDYIHRIGRTGRSNNIGYAYTFILPNEYTKAY 1083
Query: 436 EIIPILE 442
+I +L+
Sbjct: 1084 DIYNLLK 1090
Score = 585 (211.0 bits), Expect = 3.0e-53, Sum P(2) = 3.0e-53
Identities = 143/399 (35%), Positives = 217/399 (54%)
Query: 542 IIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAF 601
I KN+Y + E+ NM V+ FRK N +I V G+ P PV F Q
Sbjct: 682 IKKNIYVQVKEITNMKDSDVDMFRKNNGNIIVR-----GK-------NCPRPVQYFYQC- 728
Query: 602 QHYP-EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHL 660
P +IL+ LE +F IQ Q P LM G D+I IA+TG+GKT ++L P + H L
Sbjct: 729 -GLPSKILQILEKKNFKKMYNIQMQTIPALMCGRDVIAIAETGSGKTLSYLFPVIRHV-L 786
Query: 661 QTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG--LKAVCVYGGKELEPQLEKIRE 718
P+ GP +++ PTREL+ Q++ E KI K ++ + VYGG + QL+ +++
Sbjct: 787 HQEPLRNNDGPISIILTPTRELSIQVKNEA-KIYCKAVNIEILAVYGGSNIARQLKVLKK 845
Query: 719 GCHILIATPGRLNDF--VSRASI-DLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNR 775
G IL+ TPGR+ D +S + +L VSFVVLDEADR+LDLGFE QI ++
Sbjct: 846 GVEILVGTPGRIIDILTISNCKVTNLNRVSFVVLDEADRLLDLGFESQIYNILRNCRKDK 905
Query: 776 QTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFF 835
QT M SAT+ +Q +AKK + P+++ VG + + Q + I++E +K L++
Sbjct: 906 QTAMISATFPNYIQNMAKKLLYKPIEIIVGEKG-KTNNNIYQFVEIIEESKKVFRLLKLL 964
Query: 836 DNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARI 895
+ V++F+ ++ + +L L+G Q DR+ LE ++
Sbjct: 965 GEWIKY-GLVLIFVNKQIEADLLYLELYKYDYNLLVLHGGQDQTDRQFTLEKFKKEENKV 1023
Query: 896 CVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
+AT V +RG+D+ ++ VINY P HIE+Y+HR+GRTG
Sbjct: 1024 LIATSVMARGIDIKNIILVINYQCPDHIEDYIHRIGRTG 1062
Score = 47 (21.6 bits), Expect = 3.2e-57, Sum P(2) = 3.2e-57
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 18 REPKI-IKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQI 62
RE I I + KE+ E+ ++++ + K N +V V+T + +
Sbjct: 321 REKSININKISKENQEICEENKKEIQ--KVKENMSNVKVITENNNL 364
Score = 47 (21.6 bits), Expect = 3.0e-53, Sum P(2) = 3.0e-53
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 538 REPKI-IKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQI 582
RE I I + KE+ E+ ++++ + K N +V V+T + +
Sbjct: 321 REKSININKISKENQEICEENKKEIQ--KVKENMSNVKVITENNNL 364
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 591 (213.1 bits), Expect = 5.4e-57, P = 5.4e-57
Identities = 129/364 (35%), Positives = 222/364 (60%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPAL--IHTHLQTTP 144
IL + +L +T P+ IQ +A P++++G D+I AQTGTGKT +F+LP L +++ + T
Sbjct: 12 ILNAIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLLEQLNSQYKETG 71
Query: 145 ISERAGP-SVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKEIEPQLEKIREGCHI 202
RA L++ PTRELA Q+E +++ Y + ++ +YGG + + Q +++ G I
Sbjct: 72 KKLRAKRIRALILVPTRELAVQVEASISQYAKYLDISSMAMYGGVDAQEQKQRLIWGVDI 131
Query: 203 LIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSA 262
L+ATPGRL D + + + +VLDEADRMLD+GF INK + +RQ ++ SA
Sbjct: 132 LVATPGRLLDMTHQRVLHFDELDMLVLDEADRMLDMGFIDDINKIIERLPEHRQNLLFSA 191
Query: 263 TWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEER 322
T +++V+ +AK+ + PV++++G+ D A+ + Q ++ +D+ K L + ++
Sbjct: 192 TMSEEVRGLAKRTIHKPVEISIGA-DKASKPKIEQWLVTVDKANKSALLSHIITTQNWQQ 250
Query: 323 DKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVA 382
++F+ K + + S L + + S++ +Q+ RE L D SG + VAT +A
Sbjct: 251 --ALIFIETKHGAAKLVSQLEKRGIVAESIHSGRAQDIREKILNDFKSGKIKFLVATAIA 308
Query: 383 SRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILE 442
+RGLD+ +L+ VINYD P+ +++Y+HR+GRTGRAG SGE+I+L+++ ++ E+ I
Sbjct: 309 ARGLDIGELSRVINYDLPAQVDDYIHRIGRTGRAGASGEAISLVSKDNF---RELCAIES 365
Query: 443 EGGH 446
GH
Sbjct: 366 RLGH 369
Score = 544 (196.6 bits), Expect = 8.3e-52, P = 8.3e-52
Identities = 117/332 (35%), Positives = 202/332 (60%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPAL--IHTHLQTTP 664
IL + +L +T P+ IQ +A P++++G D+I AQTGTGKT +F+LP L +++ + T
Sbjct: 12 ILNAIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLLEQLNSQYKETG 71
Query: 665 ISERAGP-SVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKELEPQLEKIREGCHI 722
RA L++ PTRELA Q+E +++ Y + ++ +YGG + + Q +++ G I
Sbjct: 72 KKLRAKRIRALILVPTRELAVQVEASISQYAKYLDISSMAMYGGVDAQEQKQRLIWGVDI 131
Query: 723 LIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSA 782
L+ATPGRL D + + + +VLDEADRMLD+GF INK + +RQ ++ SA
Sbjct: 132 LVATPGRLLDMTHQRVLHFDELDMLVLDEADRMLDMGFIDDINKIIERLPEHRQNLLFSA 191
Query: 783 TWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEER 842
T +++V+ +AK+ + PV++++G+ D A+ + Q ++ +D+ K L + ++
Sbjct: 192 TMSEEVRGLAKRTIHKPVEISIGA-DKASKPKIEQWLVTVDKANKSALLSHIITTQNWQQ 250
Query: 843 DKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVA 902
++F+ K + + S L + + S++ +Q+ RE L D SG + VAT +A
Sbjct: 251 --ALIFIETKHGAAKLVSQLEKRGIVAESIHSGRAQDIREKILNDFKSGKIKFLVATAIA 308
Query: 903 SRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
+RGLD+ +L+ VINYD P+ +++Y+HR+GRTG
Sbjct: 309 ARGLDIGELSRVINYDLPAQVDDYIHRIGRTG 340
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 591 (213.1 bits), Expect = 5.4e-57, P = 5.4e-57
Identities = 130/353 (36%), Positives = 207/353 (58%)
Query: 86 EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI 145
E+++ +E + F +PIQA+ P+ + D+IG AQTGTGKT AF +P + +++ + +
Sbjct: 12 EVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEKVNVKNSAV 71
Query: 146 SERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILI 204
LV+APTRELA Q+ E+ KI K ++ + +YGG++IE Q+ +++ H+++
Sbjct: 72 Q------ALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKHPHVIV 125
Query: 205 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 264
TPGR+ D ++R ++ L+ V VVLDEAD ML++GF I ++ RQT++ SAT
Sbjct: 126 GTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTLLFSATM 185
Query: 265 NKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDK 324
++R+A+++M P V V + ++ + + Q + + E +K D L D E
Sbjct: 186 PDPIRRIAERFMNEPELVKVKAKEMTVPN-IQQYYLEVHEKKKFDILTRLLDIQAPEL-- 242
Query: 325 VMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASR 384
+VF K V ++ L + + ++GDLSQ R L G I VATDVA+R
Sbjct: 243 AIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVATDVAAR 302
Query: 385 GLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEI 437
GLD+ +THV N+D P E YVHR+GRTGRAGK+G ++T +T ++ H I
Sbjct: 303 GLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHI 355
Score = 541 (195.5 bits), Expect = 1.8e-51, P = 1.8e-51
Identities = 120/330 (36%), Positives = 192/330 (58%)
Query: 606 EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI 665
E+++ +E + F +PIQA+ P+ + D+IG AQTGTGKT AF +P + +++ + +
Sbjct: 12 EVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEKVNVKNSAV 71
Query: 666 SERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILI 724
LV+APTRELA Q+ E+ KI K ++ + +YGG+++E Q+ +++ H+++
Sbjct: 72 Q------ALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKHPHVIV 125
Query: 725 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 784
TPGR+ D ++R ++ L+ V VVLDEAD ML++GF I ++ RQT++ SAT
Sbjct: 126 GTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTLLFSATM 185
Query: 785 NKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDK 844
++R+A+++M P V V + ++ + + Q + + E +K D L D E
Sbjct: 186 PDPIRRIAERFMNEPELVKVKAKEMTVPN-IQQYYLEVHEKKKFDILTRLLDIQAPEL-- 242
Query: 845 VMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASR 904
+VF K V ++ L + + ++GDLSQ R L G I VATDVA+R
Sbjct: 243 AIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVATDVAAR 302
Query: 905 GLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
GLD+ +THV N+D P E YVHR+GRTG
Sbjct: 303 GLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 590 (212.7 bits), Expect = 7.0e-57, P = 7.0e-57
Identities = 127/345 (36%), Positives = 204/345 (59%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 146
+L+ + +L F P+PIQ +A P+++ GH+++G A TGTGKT A+LLP L Q
Sbjct: 13 LLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVL-----QRIQRG 67
Query: 147 ERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIA 205
++A VL++ PTRELA Q+ EV K+ Y ++A+ VYGG+ IE Q+ +R+G +++
Sbjct: 68 KKA--QVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQGVEVIVG 125
Query: 206 TPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWN 265
TPGR+ D + R + + V+LDEAD MLD+GF I + +QT++ SAT
Sbjct: 126 TPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLLFSATLP 185
Query: 266 KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKV 325
++ + KK++ V + + + Q L E EK + L+ ++ E +
Sbjct: 186 APIKTIIKKFLGGYKTVKLVGREKTVP-AIRQVYYELPETEKIEGLVSILNS--ELPIQA 242
Query: 326 MVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRG 385
+VF K V + L + + L+GD+SQ +R ++ +G + VATDVA+RG
Sbjct: 243 IVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATDVAARG 302
Query: 386 LDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430
LD+PD++HVIN+D P + E Y+HR+GRTGRAG+ G++ITL+ ++
Sbjct: 303 LDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRE 347
Score = 547 (197.6 bits), Expect = 3.9e-52, P = 3.9e-52
Identities = 119/329 (36%), Positives = 191/329 (58%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 666
+L+ + +L F P+PIQ +A P+++ GH+++G A TGTGKT A+LLP L Q
Sbjct: 13 LLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVL-----QRIQRG 67
Query: 667 ERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIA 725
++A VL++ PTRELA Q+ EV K+ Y ++A+ VYGG+ +E Q+ +R+G +++
Sbjct: 68 KKA--QVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQGVEVIVG 125
Query: 726 TPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWN 785
TPGR+ D + R + + V+LDEAD MLD+GF I + +QT++ SAT
Sbjct: 126 TPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLLFSATLP 185
Query: 786 KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKV 845
++ + KK++ V + + + Q L E EK + L+ ++ E +
Sbjct: 186 APIKTIIKKFLGGYKTVKLVGREKTVP-AIRQVYYELPETEKIEGLVSILNS--ELPIQA 242
Query: 846 MVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRG 905
+VF K V + L + + L+GD+SQ +R ++ +G + VATDVA+RG
Sbjct: 243 IVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATDVAARG 302
Query: 906 LDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
LD+PD++HVIN+D P + E Y+HR+GRTG
Sbjct: 303 LDIPDVSHVINFDIPQNPESYIHRIGRTG 331
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 590 (212.7 bits), Expect = 7.0e-57, P = 7.0e-57
Identities = 127/345 (36%), Positives = 204/345 (59%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 146
+L+ + +L F P+PIQ +A P+++ GH+++G A TGTGKT A+LLP L Q
Sbjct: 13 LLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVL-----QRIQRG 67
Query: 147 ERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIA 205
++A VL++ PTRELA Q+ EV K+ Y ++A+ VYGG+ IE Q+ +R+G +++
Sbjct: 68 KKA--QVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQGVEVIVG 125
Query: 206 TPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWN 265
TPGR+ D + R + + V+LDEAD MLD+GF I + +QT++ SAT
Sbjct: 126 TPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLLFSATLP 185
Query: 266 KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKV 325
++ + KK++ V + + + Q L E EK + L+ ++ E +
Sbjct: 186 APIKTIIKKFLGGYKTVKLVGREKTVP-AIRQVYYELPETEKIEGLVSILNS--ELPIQA 242
Query: 326 MVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRG 385
+VF K V + L + + L+GD+SQ +R ++ +G + VATDVA+RG
Sbjct: 243 IVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATDVAARG 302
Query: 386 LDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430
LD+PD++HVIN+D P + E Y+HR+GRTGRAG+ G++ITL+ ++
Sbjct: 303 LDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRE 347
Score = 547 (197.6 bits), Expect = 3.9e-52, P = 3.9e-52
Identities = 119/329 (36%), Positives = 191/329 (58%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 666
+L+ + +L F P+PIQ +A P+++ GH+++G A TGTGKT A+LLP L Q
Sbjct: 13 LLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVL-----QRIQRG 67
Query: 667 ERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIA 725
++A VL++ PTRELA Q+ EV K+ Y ++A+ VYGG+ +E Q+ +R+G +++
Sbjct: 68 KKA--QVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQGVEVIVG 125
Query: 726 TPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWN 785
TPGR+ D + R + + V+LDEAD MLD+GF I + +QT++ SAT
Sbjct: 126 TPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLLFSATLP 185
Query: 786 KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKV 845
++ + KK++ V + + + Q L E EK + L+ ++ E +
Sbjct: 186 APIKTIIKKFLGGYKTVKLVGREKTVP-AIRQVYYELPETEKIEGLVSILNS--ELPIQA 242
Query: 846 MVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRG 905
+VF K V + L + + L+GD+SQ +R ++ +G + VATDVA+RG
Sbjct: 243 IVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATDVAARG 302
Query: 906 LDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
LD+PD++HVIN+D P + E Y+HR+GRTG
Sbjct: 303 LDIPDVSHVINFDIPQNPESYIHRIGRTG 331
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 589 (212.4 bits), Expect = 9.0e-57, P = 9.0e-57
Identities = 133/342 (38%), Positives = 199/342 (58%)
Query: 91 LENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI-SERA 149
+E +T P+P+Q +A P ++ G D++ AQTGTGKT F LP L P S+R
Sbjct: 16 IEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGHPDKSQRH 75
Query: 150 GPS---VLVMAPTRELATQIEREVNKIDYKGLKAV--CVYGGKEIEPQLEKIREGCHILI 204
GP VLV+ PTRELA Q+ K+ + LK V C++GG + PQ++ + G +L+
Sbjct: 76 GPRQPRVLVLTPTRELAAQVHDSF-KLYARDLKFVSACIFGGVGMNPQVQAMARGVDVLV 134
Query: 205 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 264
A PGRL D + S+DL V +VLDEADRMLD+GF + K + RQ ++ SAT+
Sbjct: 135 ACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATF 194
Query: 265 NKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDK 324
+KD+ +A K + NP ++ V + + Q++ L K+ L E+
Sbjct: 195 SKDITDLAGKLLHNPERIEVTPPN-TTVERIEQRVFRLPASHKRALLAHLITAGAWEQ-- 251
Query: 325 VMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASR 384
V+VF K + ++ L + +++G+ SQ R AL D +G RI VATD+A+R
Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKAGEVRILVATDIAAR 311
Query: 385 GLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLM 426
GLD+ L HV+N++ P+ E+YVHR+GRTGRAG+SGE+I+L+
Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353
Score = 547 (197.6 bits), Expect = 3.9e-52, P = 3.9e-52
Identities = 125/330 (37%), Positives = 187/330 (56%)
Query: 611 LENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI-SERA 669
+E +T P+P+Q +A P ++ G D++ AQTGTGKT F LP L P S+R
Sbjct: 16 IEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGHPDKSQRH 75
Query: 670 GPS---VLVMAPTRELATQIEREVNKIDYKGLKAV--CVYGGKELEPQLEKIREGCHILI 724
GP VLV+ PTRELA Q+ K+ + LK V C++GG + PQ++ + G +L+
Sbjct: 76 GPRQPRVLVLTPTRELAAQVHDSF-KLYARDLKFVSACIFGGVGMNPQVQAMARGVDVLV 134
Query: 725 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 784
A PGRL D + S+DL V +VLDEADRMLD+GF + K + RQ ++ SAT+
Sbjct: 135 ACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATF 194
Query: 785 NKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDK 844
+KD+ +A K + NP ++ V + + Q++ L K+ L E+
Sbjct: 195 SKDITDLAGKLLHNPERIEVTPPN-TTVERIEQRVFRLPASHKRALLAHLITAGAWEQ-- 251
Query: 845 VMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASR 904
V+VF K + ++ L + +++G+ SQ R AL D +G RI VATD+A+R
Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKAGEVRILVATDIAAR 311
Query: 905 GLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
GLD+ L HV+N++ P+ E+YVHR+GRTG
Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTG 341
>UNIPROTKB|Q47Z59 [details] [associations]
symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
"ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 571 (206.1 bits), Expect = 1.2e-56, Sum P(2) = 1.2e-56
Identities = 126/365 (34%), Positives = 213/365 (58%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 146
++ +E++ F P+ IQ QA P M+GHD+I ++TG+GKT AF++PAL + +S
Sbjct: 12 LMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQRLS-KNRALS 70
Query: 147 ERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGGKEIEPQLEKIREGCHILIA 205
+R P V+++ PTRELA Q+ ++ KAV + GG+ Q++ +++ ++A
Sbjct: 71 KR-DPRVVILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQVKVLQKEPEFIVA 129
Query: 206 TPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEP---QINKTSIYINPNRQTVMTSA 262
TPGRL D +++ L + ++LDEADRMLDLGF QINK + + RQT++ SA
Sbjct: 130 TPGRLADHLTQGHFHLNGLELLILDEADRMLDLGFSKELTQINKAADH--RKRQTLLFSA 187
Query: 263 TWNK-DVQRVAKKYMVNP--VKVNVGSLDLAATHT-VTQKIIILDEDEKKDWLMEFFDNM 318
T + V A + + P + +N G + H + ++ + D +K+ L++ F +
Sbjct: 188 TLDHAQVNEFATELLTKPKRIAINAGHSE----HVDIAKRFYLADNLTQKEALLQHF-LV 242
Query: 319 DEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVA 378
E+ ++++F ++ ++ L Q + +L G+L+Q R +E + G +I V
Sbjct: 243 TEKSQQIIIFTATRSDTDRLAKLLTEQNLNAVALSGELNQGQRNQIMESFSKGQHKILVT 302
Query: 379 TDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEII 438
TD+ASRGLD+ +++HVIN+D P H EE+VHR+GRTGRAG G++I+L+ DW +
Sbjct: 303 TDLASRGLDLINVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLVGPNDWLSLKNVE 362
Query: 439 PILEE 443
L++
Sbjct: 363 AFLQQ 367
Score = 523 (189.2 bits), Expect = 1.6e-49, P = 1.6e-49
Identities = 117/336 (34%), Positives = 197/336 (58%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 666
++ +E++ F P+ IQ QA P M+GHD+I ++TG+GKT AF++PAL + +S
Sbjct: 12 LMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQRLS-KNRALS 70
Query: 667 ERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGGKELEPQLEKIREGCHILIA 725
+R P V+++ PTRELA Q+ ++ KAV + GG+ Q++ +++ ++A
Sbjct: 71 KR-DPRVVILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQVKVLQKEPEFIVA 129
Query: 726 TPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEP---QINKTSIYINPNRQTVMTSA 782
TPGRL D +++ L + ++LDEADRMLDLGF QINK + + RQT++ SA
Sbjct: 130 TPGRLADHLTQGHFHLNGLELLILDEADRMLDLGFSKELTQINKAADH--RKRQTLLFSA 187
Query: 783 TWNK-DVQRVAKKYMVNP--VKVNVGSLDLAATHT-VTQKIIILDEDEKKDWLMEFFDNM 838
T + V A + + P + +N G + H + ++ + D +K+ L++ F +
Sbjct: 188 TLDHAQVNEFATELLTKPKRIAINAGHSE----HVDIAKRFYLADNLTQKEALLQHF-LV 242
Query: 839 DEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVA 898
E+ ++++F ++ ++ L Q + +L G+L+Q R +E + G +I V
Sbjct: 243 TEKSQQIIIFTATRSDTDRLAKLLTEQNLNAVALSGELNQGQRNQIMESFSKGQHKILVT 302
Query: 899 TDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
TD+ASRGLD+ +++HVIN+D P H EE+VHR+GRTG
Sbjct: 303 TDLASRGLDLINVSHVINFDMPKHTEEFVHRIGRTG 338
Score = 41 (19.5 bits), Expect = 1.2e-56, Sum P(2) = 1.2e-56
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 527 LSDRKERDKWAREP-KIIKNVYKEDPEVANM--------TPEQVEAFRKKNND 570
+S K++ + +P K+IK + + + M TP+Q+E KK D
Sbjct: 396 VSVAKDKKAVSNKPRKVIKKTFLDIEDAGAMKIIKRKKLTPDQIEDATKKEQD 448
>TIGR_CMR|CPS_3215 [details] [associations]
symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 571 (206.1 bits), Expect = 1.2e-56, Sum P(2) = 1.2e-56
Identities = 126/365 (34%), Positives = 213/365 (58%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 146
++ +E++ F P+ IQ QA P M+GHD+I ++TG+GKT AF++PAL + +S
Sbjct: 12 LMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQRLS-KNRALS 70
Query: 147 ERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGGKEIEPQLEKIREGCHILIA 205
+R P V+++ PTRELA Q+ ++ KAV + GG+ Q++ +++ ++A
Sbjct: 71 KR-DPRVVILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQVKVLQKEPEFIVA 129
Query: 206 TPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEP---QINKTSIYINPNRQTVMTSA 262
TPGRL D +++ L + ++LDEADRMLDLGF QINK + + RQT++ SA
Sbjct: 130 TPGRLADHLTQGHFHLNGLELLILDEADRMLDLGFSKELTQINKAADH--RKRQTLLFSA 187
Query: 263 TWNK-DVQRVAKKYMVNP--VKVNVGSLDLAATHT-VTQKIIILDEDEKKDWLMEFFDNM 318
T + V A + + P + +N G + H + ++ + D +K+ L++ F +
Sbjct: 188 TLDHAQVNEFATELLTKPKRIAINAGHSE----HVDIAKRFYLADNLTQKEALLQHF-LV 242
Query: 319 DEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVA 378
E+ ++++F ++ ++ L Q + +L G+L+Q R +E + G +I V
Sbjct: 243 TEKSQQIIIFTATRSDTDRLAKLLTEQNLNAVALSGELNQGQRNQIMESFSKGQHKILVT 302
Query: 379 TDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEII 438
TD+ASRGLD+ +++HVIN+D P H EE+VHR+GRTGRAG G++I+L+ DW +
Sbjct: 303 TDLASRGLDLINVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLVGPNDWLSLKNVE 362
Query: 439 PILEE 443
L++
Sbjct: 363 AFLQQ 367
Score = 523 (189.2 bits), Expect = 1.6e-49, P = 1.6e-49
Identities = 117/336 (34%), Positives = 197/336 (58%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 666
++ +E++ F P+ IQ QA P M+GHD+I ++TG+GKT AF++PAL + +S
Sbjct: 12 LMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQRLS-KNRALS 70
Query: 667 ERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAVCVYGGKELEPQLEKIREGCHILIA 725
+R P V+++ PTRELA Q+ ++ KAV + GG+ Q++ +++ ++A
Sbjct: 71 KR-DPRVVILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQVKVLQKEPEFIVA 129
Query: 726 TPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEP---QINKTSIYINPNRQTVMTSA 782
TPGRL D +++ L + ++LDEADRMLDLGF QINK + + RQT++ SA
Sbjct: 130 TPGRLADHLTQGHFHLNGLELLILDEADRMLDLGFSKELTQINKAADH--RKRQTLLFSA 187
Query: 783 TWNK-DVQRVAKKYMVNP--VKVNVGSLDLAATHT-VTQKIIILDEDEKKDWLMEFFDNM 838
T + V A + + P + +N G + H + ++ + D +K+ L++ F +
Sbjct: 188 TLDHAQVNEFATELLTKPKRIAINAGHSE----HVDIAKRFYLADNLTQKEALLQHF-LV 242
Query: 839 DEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVA 898
E+ ++++F ++ ++ L Q + +L G+L+Q R +E + G +I V
Sbjct: 243 TEKSQQIIIFTATRSDTDRLAKLLTEQNLNAVALSGELNQGQRNQIMESFSKGQHKILVT 302
Query: 899 TDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
TD+ASRGLD+ +++HVIN+D P H EE+VHR+GRTG
Sbjct: 303 TDLASRGLDLINVSHVINFDMPKHTEEFVHRIGRTG 338
Score = 41 (19.5 bits), Expect = 1.2e-56, Sum P(2) = 1.2e-56
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 527 LSDRKERDKWAREP-KIIKNVYKEDPEVANM--------TPEQVEAFRKKNND 570
+S K++ + +P K+IK + + + M TP+Q+E KK D
Sbjct: 396 VSVAKDKKAVSNKPRKVIKKTFLDIEDAGAMKIIKRKKLTPDQIEDATKKEQD 448
>TIGR_CMR|GSU_0491 [details] [associations]
symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
Length = 450
Score = 588 (212.0 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 126/354 (35%), Positives = 199/354 (56%)
Query: 85 PEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTP 144
P IL+ + +T P+P+QA A P + D++ AQTGTGKT AF+LPAL L + P
Sbjct: 10 PHILKAVAACGYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPAL--QRLSSPP 67
Query: 145 ISERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHIL 203
GP VLV+ PTRELA Q+ V + +++ + GG QL + +
Sbjct: 68 QGPGRGPRVLVLTPTRELAQQVTDAVRTYGAFMRVRSGAILGGMPYHAQLRLLSAPVDFI 127
Query: 204 IATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSAT 263
+ATPGRL D + R S+DL + +VLDEADRMLD+GF +++ + RQT++ +AT
Sbjct: 128 VATPGRLVDLLDRRSLDLSRLELLVLDEADRMLDMGFSDDVDRIAAASPATRQTLLFTAT 187
Query: 264 WNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERD 323
+ + R+A + + P ++++ H + Q++ + D+ K+ L+ DE
Sbjct: 188 MDSAMARLAGRLLREPERIDIAGTKTTHEH-IEQRLHVADDLHHKNRLLRHLIT-DESLR 245
Query: 324 KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 383
+ ++F K ++ +L Q + +L+GD+ Q R + + G R+ VATDVA+
Sbjct: 246 RAIIFSATKRDAENLALELKAQGHSAAALHGDMPQNARNRTIAAMKQGRIRLLVATDVAA 305
Query: 384 RGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEI 437
RGLDV ++HVIN+D P E+YVHR+GRTGRAG SG +I+ + + ++ I
Sbjct: 306 RGLDVTGISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFASLNEVNYLARI 359
Score = 560 (202.2 bits), Expect = 1.5e-53, P = 1.5e-53
Identities = 119/331 (35%), Positives = 186/331 (56%)
Query: 605 PEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTP 664
P IL+ + +T P+P+QA A P + D++ AQTGTGKT AF+LPAL L + P
Sbjct: 10 PHILKAVAACGYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPAL--QRLSSPP 67
Query: 665 ISERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHIL 723
GP VLV+ PTRELA Q+ V + +++ + GG QL + +
Sbjct: 68 QGPGRGPRVLVLTPTRELAQQVTDAVRTYGAFMRVRSGAILGGMPYHAQLRLLSAPVDFI 127
Query: 724 IATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSAT 783
+ATPGRL D + R S+DL + +VLDEADRMLD+GF +++ + RQT++ +AT
Sbjct: 128 VATPGRLVDLLDRRSLDLSRLELLVLDEADRMLDMGFSDDVDRIAAASPATRQTLLFTAT 187
Query: 784 WNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERD 843
+ + R+A + + P ++++ H + Q++ + D+ K+ L+ DE
Sbjct: 188 MDSAMARLAGRLLREPERIDIAGTKTTHEH-IEQRLHVADDLHHKNRLLRHLIT-DESLR 245
Query: 844 KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 903
+ ++F K ++ +L Q + +L+GD+ Q R + + G R+ VATDVA+
Sbjct: 246 RAIIFSATKRDAENLALELKAQGHSAAALHGDMPQNARNRTIAAMKQGRIRLLVATDVAA 305
Query: 904 RGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
RGLDV ++HVIN+D P E+YVHR+GRTG
Sbjct: 306 RGLDVTGISHVINFDLPKFAEDYVHRIGRTG 336
>UNIPROTKB|Q65N62 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
PATRIC:18946609 ProtClustDB:CLSK886742
BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
Length = 487
Score = 588 (212.0 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 136/361 (37%), Positives = 210/361 (58%)
Query: 79 QAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHT 138
Q FQ ++ + ++ + F +PIQAQ P+ ++ D+IG AQTGTGKT AF +P L+
Sbjct: 6 QDFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIP-LVE- 63
Query: 139 HLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDY-KGLKAVCVYGGKEIEPQLEKIR 197
+ P E +V+APTRELA Q+ E+ KI K + + +YGG++I Q+ ++
Sbjct: 64 --KINP--ESPNIQAIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRALK 119
Query: 198 EGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQT 257
+ HI++ TPGRL D ++R ++ L+ V+ VVLDEAD ML++GF I + QT
Sbjct: 120 KNPHIIVGTPGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQT 179
Query: 258 VMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDN 317
++ SAT ++R+A+++M NP V V + ++ ++ + Q + + E +K D L D
Sbjct: 180 LLFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSN-IQQFYLEVHERKKFDTLTRLLDI 238
Query: 318 MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICV 377
E +VF K V ++ L + + ++GDL+Q R +AL G + V
Sbjct: 239 QSPEL--AIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLV 296
Query: 378 ATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMT--RKDWSHAH 435
ATDVA+RGLD+ +THV N+D P E YVHR+GRTGRAGK+G ++T +T KD A
Sbjct: 297 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAI 356
Query: 436 E 436
E
Sbjct: 357 E 357
Score = 545 (196.9 bits), Expect = 6.5e-52, P = 6.5e-52
Identities = 124/337 (36%), Positives = 195/337 (57%)
Query: 599 QAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHT 658
Q FQ ++ + ++ + F +PIQAQ P+ ++ D+IG AQTGTGKT AF +P L+
Sbjct: 6 QDFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIP-LVE- 63
Query: 659 HLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDY-KGLKAVCVYGGKELEPQLEKIR 717
+ P E +V+APTRELA Q+ E+ KI K + + +YGG+++ Q+ ++
Sbjct: 64 --KINP--ESPNIQAIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRALK 119
Query: 718 EGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQT 777
+ HI++ TPGRL D ++R ++ L+ V+ VVLDEAD ML++GF I + QT
Sbjct: 120 KNPHIIVGTPGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQT 179
Query: 778 VMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDN 837
++ SAT ++R+A+++M NP V V + ++ ++ + Q + + E +K D L D
Sbjct: 180 LLFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSN-IQQFYLEVHERKKFDTLTRLLDI 238
Query: 838 MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICV 897
E +VF K V ++ L + + ++GDL+Q R +AL G + V
Sbjct: 239 QSPEL--AIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLV 296
Query: 898 ATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
ATDVA+RGLD+ +THV N+D P E YVHR+GRTG
Sbjct: 297 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTG 333
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 586 (211.3 bits), Expect = 1.9e-56, P = 1.9e-56
Identities = 129/350 (36%), Positives = 206/350 (58%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 146
+LR L+ L + P+PIQ+ + LM+G D++G AQTGTGKT AF LP L QTTP
Sbjct: 17 LLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVTSQTTP-- 74
Query: 147 ERAGPSVLVMAPTRELATQIEREVNKID--YKGLKAVCVYGGKEIEPQLEKIREGCHILI 204
+LV+APTRELA Q+ + K + +YGG+ ++ QL ++ G +++
Sbjct: 75 -----QILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALKRGPQVIV 129
Query: 205 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 264
TPGR+ D + R ++ L+ + +VLDEAD ML +GF I + P RQ + SAT
Sbjct: 130 GTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPPQRQLALFSATM 189
Query: 265 NKDVQRVAKKYMVNPVKVNVGSLDLAATHT----VTQKIIILDEDEKKDWLMEFFDNMDE 320
+ ++RVA K++ N +++ AA+HT + Q+ + + + K + L+ + E
Sbjct: 190 PEQIKRVANKHLKNATNISI-----AASHTTVDSIEQRFVQVSQHNKLEALVRVLEV--E 242
Query: 321 ERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATD 380
+ +++F+ + S ++ L + S L+GD++Q+ RE A+E + +G I +ATD
Sbjct: 243 NTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDILIATD 302
Query: 381 VASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430
VA+RGLDV + HV+NYD P E YVHR+GRTGRAG++G +I +T ++
Sbjct: 303 VAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSRE 352
Score = 552 (199.4 bits), Expect = 1.1e-52, P = 1.1e-52
Identities = 123/334 (36%), Positives = 194/334 (58%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 666
+LR L+ L + P+PIQ+ + LM+G D++G AQTGTGKT AF LP L QTTP
Sbjct: 17 LLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVTSQTTP-- 74
Query: 667 ERAGPSVLVMAPTRELATQIEREVNKID--YKGLKAVCVYGGKELEPQLEKIREGCHILI 724
+LV+APTRELA Q+ + K + +YGG+ ++ QL ++ G +++
Sbjct: 75 -----QILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALKRGPQVIV 129
Query: 725 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 784
TPGR+ D + R ++ L+ + +VLDEAD ML +GF I + P RQ + SAT
Sbjct: 130 GTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPPQRQLALFSATM 189
Query: 785 NKDVQRVAKKYMVNPVKVNVGSLDLAATHT----VTQKIIILDEDEKKDWLMEFFDNMDE 840
+ ++RVA K++ N +++ AA+HT + Q+ + + + K + L+ + E
Sbjct: 190 PEQIKRVANKHLKNATNISI-----AASHTTVDSIEQRFVQVSQHNKLEALVRVLEV--E 242
Query: 841 ERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATD 900
+ +++F+ + S ++ L + S L+GD++Q+ RE A+E + +G I +ATD
Sbjct: 243 NTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDILIATD 302
Query: 901 VASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
VA+RGLDV + HV+NYD P E YVHR+GRTG
Sbjct: 303 VAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTG 336
>UNIPROTKB|Q9KNA4 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0016070 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT ProtClustDB:CLSK869483
PIR:C82506 RefSeq:NP_232462.1 ProteinModelPortal:Q9KNA4
DNASU:2612119 GeneID:2612119 KEGG:vch:VCA0061 PATRIC:20084709
Uniprot:Q9KNA4
Length = 452
Score = 584 (210.6 bits), Expect = 3.3e-56, P = 3.3e-56
Identities = 131/361 (36%), Positives = 209/361 (57%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 146
+L+ L + +F + IQ QA P+ ++G D++ ++TG+GKT AF+LP ++H L+T S
Sbjct: 16 LLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLP-MLHKSLKTKAFS 74
Query: 147 ERAGPSVLVMAPTRELATQIEREVNKIDYKGLK--AVCVYGGKEIEPQLEKIREGCHILI 204
+ P L++ PTRELA Q+ E+ + GL A + GG+ Q++ + G ++
Sbjct: 75 AK-DPRGLILVPTRELAKQVYGELRSM-LGGLSYTATLITGGENFNDQVKALARGPRFIV 132
Query: 205 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT-SIYINPNRQTVMTSAT 263
ATPGRL D + S+ L+ + +VLDEADRMLDLGF ++ + + + RQT+M SAT
Sbjct: 133 ATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMFSAT 192
Query: 264 WNK-DVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEER 322
+ DV +A + + P ++ +G + +TQ + D + K+ L++ D E
Sbjct: 193 LDHADVNDMAMELLNEPKRIAIG-VGSEEHKDITQHFYLCDHLDHKEALLDRI-LADAEY 250
Query: 323 DKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVA 382
+V++F +A ++ L K+ +L G+L+Q R + +I V TDVA
Sbjct: 251 RQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKILVTTDVA 310
Query: 383 SRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILE 442
SRGLD+P +THVIN+D P H EEYVHRVGRTGRAG G++++L+ KDW + L+
Sbjct: 311 SRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFLQ 370
Query: 443 E 443
+
Sbjct: 371 Q 371
Score = 532 (192.3 bits), Expect = 1.7e-50, P = 1.7e-50
Identities = 122/332 (36%), Positives = 192/332 (57%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 666
+L+ L + +F + IQ QA P+ ++G D++ ++TG+GKT AF+LP ++H L+T S
Sbjct: 16 LLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLP-MLHKSLKTKAFS 74
Query: 667 ERAGPSVLVMAPTRELATQIEREVNKIDYKGLK--AVCVYGGKELEPQLEKIREGCHILI 724
+ P L++ PTRELA Q+ E+ + GL A + GG+ Q++ + G ++
Sbjct: 75 AK-DPRGLILVPTRELAKQVYGELRSM-LGGLSYTATLITGGENFNDQVKALARGPRFIV 132
Query: 725 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT-SIYINPNRQTVMTSAT 783
ATPGRL D + S+ L+ + +VLDEADRMLDLGF ++ + + + RQT+M SAT
Sbjct: 133 ATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMFSAT 192
Query: 784 WNK-DVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEER 842
+ DV +A + + P ++ +G + +TQ + D + K+ L++ D E
Sbjct: 193 LDHADVNDMAMELLNEPKRIAIG-VGSEEHKDITQHFYLCDHLDHKEALLDRI-LADAEY 250
Query: 843 DKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVA 902
+V++F +A ++ L K+ +L G+L+Q R + +I V TDVA
Sbjct: 251 RQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKILVTTDVA 310
Query: 903 SRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
SRGLD+P +THVIN+D P H EEYVHRVGRTG
Sbjct: 311 SRGLDIPAVTHVINFDMPKHTEEYVHRVGRTG 342
>TIGR_CMR|VC_A0061 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT
ProtClustDB:CLSK869483 PIR:C82506 RefSeq:NP_232462.1
ProteinModelPortal:Q9KNA4 DNASU:2612119 GeneID:2612119
KEGG:vch:VCA0061 PATRIC:20084709 Uniprot:Q9KNA4
Length = 452
Score = 584 (210.6 bits), Expect = 3.3e-56, P = 3.3e-56
Identities = 131/361 (36%), Positives = 209/361 (57%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 146
+L+ L + +F + IQ QA P+ ++G D++ ++TG+GKT AF+LP ++H L+T S
Sbjct: 16 LLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLP-MLHKSLKTKAFS 74
Query: 147 ERAGPSVLVMAPTRELATQIEREVNKIDYKGLK--AVCVYGGKEIEPQLEKIREGCHILI 204
+ P L++ PTRELA Q+ E+ + GL A + GG+ Q++ + G ++
Sbjct: 75 AK-DPRGLILVPTRELAKQVYGELRSM-LGGLSYTATLITGGENFNDQVKALARGPRFIV 132
Query: 205 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT-SIYINPNRQTVMTSAT 263
ATPGRL D + S+ L+ + +VLDEADRMLDLGF ++ + + + RQT+M SAT
Sbjct: 133 ATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMFSAT 192
Query: 264 WNK-DVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEER 322
+ DV +A + + P ++ +G + +TQ + D + K+ L++ D E
Sbjct: 193 LDHADVNDMAMELLNEPKRIAIG-VGSEEHKDITQHFYLCDHLDHKEALLDRI-LADAEY 250
Query: 323 DKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVA 382
+V++F +A ++ L K+ +L G+L+Q R + +I V TDVA
Sbjct: 251 RQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKILVTTDVA 310
Query: 383 SRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILE 442
SRGLD+P +THVIN+D P H EEYVHRVGRTGRAG G++++L+ KDW + L+
Sbjct: 311 SRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFLQ 370
Query: 443 E 443
+
Sbjct: 371 Q 371
Score = 532 (192.3 bits), Expect = 1.7e-50, P = 1.7e-50
Identities = 122/332 (36%), Positives = 192/332 (57%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 666
+L+ L + +F + IQ QA P+ ++G D++ ++TG+GKT AF+LP ++H L+T S
Sbjct: 16 LLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLP-MLHKSLKTKAFS 74
Query: 667 ERAGPSVLVMAPTRELATQIEREVNKIDYKGLK--AVCVYGGKELEPQLEKIREGCHILI 724
+ P L++ PTRELA Q+ E+ + GL A + GG+ Q++ + G ++
Sbjct: 75 AK-DPRGLILVPTRELAKQVYGELRSM-LGGLSYTATLITGGENFNDQVKALARGPRFIV 132
Query: 725 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT-SIYINPNRQTVMTSAT 783
ATPGRL D + S+ L+ + +VLDEADRMLDLGF ++ + + + RQT+M SAT
Sbjct: 133 ATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMFSAT 192
Query: 784 WNK-DVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEER 842
+ DV +A + + P ++ +G + +TQ + D + K+ L++ D E
Sbjct: 193 LDHADVNDMAMELLNEPKRIAIG-VGSEEHKDITQHFYLCDHLDHKEALLDRI-LADAEY 250
Query: 843 DKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVA 902
+V++F +A ++ L K+ +L G+L+Q R + +I V TDVA
Sbjct: 251 RQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKILVTTDVA 310
Query: 903 SRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
SRGLD+P +THVIN+D P H EEYVHRVGRTG
Sbjct: 311 SRGLDIPAVTHVINFDMPKHTEEYVHRVGRTG 342
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 581 (209.6 bits), Expect = 7.0e-56, P = 7.0e-56
Identities = 130/346 (37%), Positives = 201/346 (58%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 146
IL L +L + PSPIQA+ P L++G D++G+AQTG+GKT AF LP L +L P
Sbjct: 17 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL--QNLD--P-- 70
Query: 147 ERAGPSVLVMAPTRELATQIEREVNKID--YKGLKAVCVYGGKEIEPQLEKIREGCHILI 204
E P +LV+APTRELA Q+ + +G+ V +YGG+ + QL +R+G I++
Sbjct: 71 ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130
Query: 205 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 264
TPGRL D + R ++DL +S +VLDEAD ML +GF + I QT + SAT
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190
Query: 265 NKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDK 324
+ ++R+ +++M P +V + S + ++Q + K + L+ F + E+ D
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQS-SVTTRPDISQSYWTVWGMRKNEALVRFLEA--EDFDA 247
Query: 325 VMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASR 384
++F+ K + ++ L S +L GD++Q RE LE + G I +ATDVA+R
Sbjct: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307
Query: 385 GLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430
GLDV ++ V+NYD P E YVHR+GRTGRAG++G ++ + ++
Sbjct: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRE 353
Score = 551 (199.0 bits), Expect = 1.4e-52, P = 1.4e-52
Identities = 126/330 (38%), Positives = 190/330 (57%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 666
IL L +L + PSPIQA+ P L++G D++G+AQTG+GKT AF LP L +L P
Sbjct: 17 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL--QNLD--P-- 70
Query: 667 ERAGPSVLVMAPTRELATQIEREVNKID--YKGLKAVCVYGGKELEPQLEKIREGCHILI 724
E P +LV+APTRELA Q+ + +G+ V +YGG+ + QL +R+G I++
Sbjct: 71 ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130
Query: 725 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 784
TPGRL D + R ++DL +S +VLDEAD ML +GF + I QT + SAT
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190
Query: 785 NKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDK 844
+ ++R+ +++M P +V + S + ++Q + K + L+ F + E+ D
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQS-SVTTRPDISQSYWTVWGMRKNEALVRFLEA--EDFDA 247
Query: 845 VMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASR 904
++F+ K + ++ L S +L GD++Q RE LE + G I +ATDVA+R
Sbjct: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307
Query: 905 GLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
GLDV ++ V+NYD P E YVHR+GRTG
Sbjct: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTG 337
>UNIPROTKB|Q8EGU0 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 564 (203.6 bits), Expect = 9.3e-56, Sum P(2) = 9.3e-56
Identities = 135/358 (37%), Positives = 200/358 (55%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 146
+L + + + +Q Q P+ + G D++ AQTGTGKT AF LP L L P +
Sbjct: 12 LLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVL--EQLAAKP-A 68
Query: 147 ERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIA 205
++ LVM PTRELA Q+ + K + LK + VYGG + PQ + + +G IL+A
Sbjct: 69 DKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGVEQGVDILVA 128
Query: 206 TPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWN 265
TPGRL D + + ++DL +V+ +V+DEADRMLDLGF I K I P QT++ SAT++
Sbjct: 129 TPGRLFDIIGQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVHQTMLFSATYS 188
Query: 266 KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKV 325
V++++ K + P VNV A+T V Q + +D+ K + L E + + V
Sbjct: 189 DAVKQLSHKMLNQPQWVNVAENTTAST--VEQLVYRVDKRRKAELLSELVGRNNWRQ--V 244
Query: 326 MVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRG 385
+VF K + +L + +GD +Q R L+D +G R+ VATDVA+RG
Sbjct: 245 LVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLVATDVAARG 304
Query: 386 LDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEE 443
LD+ L VIN + P E+YVHR+GRTGRAG SG +I+ ++ D EI ++ E
Sbjct: 305 LDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEIEALIGE 362
Score = 528 (190.9 bits), Expect = 4.7e-50, P = 4.7e-50
Identities = 125/329 (37%), Positives = 184/329 (55%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 666
+L + + + +Q Q P+ + G D++ AQTGTGKT AF LP L L P +
Sbjct: 12 LLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVL--EQLAAKP-A 68
Query: 667 ERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIA 725
++ LVM PTRELA Q+ + K + LK + VYGG + PQ + + +G IL+A
Sbjct: 69 DKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGVEQGVDILVA 128
Query: 726 TPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWN 785
TPGRL D + + ++DL +V+ +V+DEADRMLDLGF I K I P QT++ SAT++
Sbjct: 129 TPGRLFDIIGQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVHQTMLFSATYS 188
Query: 786 KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKV 845
V++++ K + P VNV A+T V Q + +D+ K + L E + + V
Sbjct: 189 DAVKQLSHKMLNQPQWVNVAENTTAST--VEQLVYRVDKRRKAELLSELVGRNNWRQ--V 244
Query: 846 MVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRG 905
+VF K + +L + +GD +Q R L+D +G R+ VATDVA+RG
Sbjct: 245 LVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLVATDVAARG 304
Query: 906 LDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
LD+ L VIN + P E+YVHR+GRTG
Sbjct: 305 LDIQALPLVINLELPFLAEDYVHRIGRTG 333
Score = 40 (19.1 bits), Expect = 9.3e-56, Sum P(2) = 9.3e-56
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 852 KASVSAMSSDLACQYRKSCSLYGDLSQEDREIA 884
K+S SS+ + RKS S G S++ +++
Sbjct: 406 KSSAGGKSSESQARARKSPSREGKYSKDKAKVS 438
>TIGR_CMR|SO_1501 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 564 (203.6 bits), Expect = 9.3e-56, Sum P(2) = 9.3e-56
Identities = 135/358 (37%), Positives = 200/358 (55%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 146
+L + + + +Q Q P+ + G D++ AQTGTGKT AF LP L L P +
Sbjct: 12 LLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVL--EQLAAKP-A 68
Query: 147 ERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIA 205
++ LVM PTRELA Q+ + K + LK + VYGG + PQ + + +G IL+A
Sbjct: 69 DKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGVEQGVDILVA 128
Query: 206 TPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWN 265
TPGRL D + + ++DL +V+ +V+DEADRMLDLGF I K I P QT++ SAT++
Sbjct: 129 TPGRLFDIIGQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVHQTMLFSATYS 188
Query: 266 KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKV 325
V++++ K + P VNV A+T V Q + +D+ K + L E + + V
Sbjct: 189 DAVKQLSHKMLNQPQWVNVAENTTAST--VEQLVYRVDKRRKAELLSELVGRNNWRQ--V 244
Query: 326 MVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRG 385
+VF K + +L + +GD +Q R L+D +G R+ VATDVA+RG
Sbjct: 245 LVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLVATDVAARG 304
Query: 386 LDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEE 443
LD+ L VIN + P E+YVHR+GRTGRAG SG +I+ ++ D EI ++ E
Sbjct: 305 LDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEIEALIGE 362
Score = 528 (190.9 bits), Expect = 4.7e-50, P = 4.7e-50
Identities = 125/329 (37%), Positives = 184/329 (55%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 666
+L + + + +Q Q P+ + G D++ AQTGTGKT AF LP L L P +
Sbjct: 12 LLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVL--EQLAAKP-A 68
Query: 667 ERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIA 725
++ LVM PTRELA Q+ + K + LK + VYGG + PQ + + +G IL+A
Sbjct: 69 DKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGVEQGVDILVA 128
Query: 726 TPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWN 785
TPGRL D + + ++DL +V+ +V+DEADRMLDLGF I K I P QT++ SAT++
Sbjct: 129 TPGRLFDIIGQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVHQTMLFSATYS 188
Query: 786 KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKV 845
V++++ K + P VNV A+T V Q + +D+ K + L E + + V
Sbjct: 189 DAVKQLSHKMLNQPQWVNVAENTTAST--VEQLVYRVDKRRKAELLSELVGRNNWRQ--V 244
Query: 846 MVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRG 905
+VF K + +L + +GD +Q R L+D +G R+ VATDVA+RG
Sbjct: 245 LVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLVATDVAARG 304
Query: 906 LDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
LD+ L VIN + P E+YVHR+GRTG
Sbjct: 305 LDIQALPLVINLELPFLAEDYVHRIGRTG 333
Score = 40 (19.1 bits), Expect = 9.3e-56, Sum P(2) = 9.3e-56
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 852 KASVSAMSSDLACQYRKSCSLYGDLSQEDREIA 884
K+S SS+ + RKS S G S++ +++
Sbjct: 406 KSSAGGKSSESQARARKSPSREGKYSKDKAKVS 438
>UNIPROTKB|P96614 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI] [GO:0010501 "RNA secondary
structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
GO:GO:0010501 Uniprot:P96614
Length = 494
Score = 577 (208.2 bits), Expect = 1.9e-55, P = 1.9e-55
Identities = 132/355 (37%), Positives = 206/355 (58%)
Query: 79 QAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHT 138
Q F ++++ + + F +PIQAQ P+ +S D+IG AQTGTGKT AF +P L+
Sbjct: 6 QDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIP-LVE- 63
Query: 139 HLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDY-KGLKAVCVYGGKEIEPQLEKIR 197
+ P E +V+APTRELA Q+ E+ KI K K + +YGG++I Q+ ++
Sbjct: 64 --KINP--ESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALK 119
Query: 198 EGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQT 257
+ +I++ TPGRL D ++R +I L V+ VV+DEAD ML++GF I + QT
Sbjct: 120 KNPNIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQT 179
Query: 258 VMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDN 317
++ SAT ++R+A+++M P V V + ++ ++ + Q + + E +K D L D
Sbjct: 180 LLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSN-IQQFYLEVQERKKFDTLTRLLDI 238
Query: 318 MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICV 377
E +VF K V ++ L + + ++GDL+Q R +AL G + V
Sbjct: 239 QSPEL--AIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLV 296
Query: 378 ATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWS 432
ATDVA+RGLD+ +THV N+D P E YVHR+GRTGRAGK+G ++T +T ++ S
Sbjct: 297 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKS 351
Score = 534 (193.0 bits), Expect = 1.0e-50, P = 1.0e-50
Identities = 123/337 (36%), Positives = 192/337 (56%)
Query: 599 QAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHT 658
Q F ++++ + + F +PIQAQ P+ +S D+IG AQTGTGKT AF +P L+
Sbjct: 6 QDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIP-LVE- 63
Query: 659 HLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDY-KGLKAVCVYGGKELEPQLEKIR 717
+ P E +V+APTRELA Q+ E+ KI K K + +YGG+++ Q+ ++
Sbjct: 64 --KINP--ESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALK 119
Query: 718 EGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQT 777
+ +I++ TPGRL D ++R +I L V+ VV+DEAD ML++GF I + QT
Sbjct: 120 KNPNIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQT 179
Query: 778 VMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDN 837
++ SAT ++R+A+++M P V V + ++ ++ + Q + + E +K D L D
Sbjct: 180 LLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSN-IQQFYLEVQERKKFDTLTRLLDI 238
Query: 838 MDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICV 897
E +VF K V ++ L + + ++GDL+Q R +AL G + V
Sbjct: 239 QSPEL--AIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLV 296
Query: 898 ATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
ATDVA+RGLD+ +THV N+D P E YVHR+GRTG
Sbjct: 297 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTG 333
>UNIPROTKB|E1BXX5 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:AADN02033796 IPI:IPI00587299
RefSeq:XP_422189.2 ProteinModelPortal:E1BXX5
Ensembl:ENSGALT00000003389 GeneID:424346 KEGG:gga:424346
NextBio:20826688 Uniprot:E1BXX5
Length = 625
Score = 563 (203.2 bits), Expect = 2.5e-55, Sum P(2) = 2.5e-55
Identities = 124/362 (34%), Positives = 208/362 (57%)
Query: 69 QIPNPVTSFKQAFQHYPEILRQ-LENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKT 127
Q+P P+ F+ +PE L L+N + P+PIQ Q P+ + G D++ A TG+GKT
Sbjct: 203 QVPRPIIEFEHC--GFPETLNSNLKNSGYEVPTPIQMQMIPVGLLGRDIVASADTGSGKT 260
Query: 128 FAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI--DYKGLKAVCVYG 185
AFLLP ++ ++E PS L++APTRELA QIER+ ++ ++ V + G
Sbjct: 261 AAFLLPVIMKV------LNETETPSALILAPTRELAIQIERQAKELMAGLPNMRTVLLVG 314
Query: 186 GKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQIN 245
G + PQL ++++ ++IATPGRL + + ++S+ L + VV+DE D ML +GF+ Q+
Sbjct: 315 GLPLPPQLHRLKQSVKVIIATPGRLLEILRQSSVQLHGIKIVVVDEVDTMLKMGFQQQVL 374
Query: 246 KTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDED 305
I+ + QT++ SAT ++ +A + + N V++ +G +L ++ V Q I+ ++E
Sbjct: 375 DILEDISHDHQTILVSATIPVGIEHLANQLLHNFVRITIGEKNLPCSN-VRQIILWVEEP 433
Query: 306 EKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSC-SLYGDLSQEDREIA 364
KK L E ++ + V+VF+ K +S + C S++ + SQ +R
Sbjct: 434 SKKKKLFEILNDKKLFKPPVLVFVDCKLGADLLSDAVHKITGLQCTSMHSEKSQVERTAI 493
Query: 365 LEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESIT 424
L+ + + V+T V RGLD+ ++ V+N+D PS ++EYVH+VGR GR G SG +IT
Sbjct: 494 LQGLLQEKYEVIVSTGVLGRGLDLVNVKLVVNFDMPSSMDEYVHQVGRAGRLGHSGTAIT 553
Query: 425 LM 426
+
Sbjct: 554 FI 555
Score = 536 (193.7 bits), Expect = 2.8e-52, Sum P(2) = 2.8e-52
Identities = 119/350 (34%), Positives = 200/350 (57%)
Query: 589 QIPNPVTSFKQAFQHYPEILRQ-LENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKT 647
Q+P P+ F+ +PE L L+N + P+PIQ Q P+ + G D++ A TG+GKT
Sbjct: 203 QVPRPIIEFEHC--GFPETLNSNLKNSGYEVPTPIQMQMIPVGLLGRDIVASADTGSGKT 260
Query: 648 FAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI--DYKGLKAVCVYG 705
AFLLP ++ ++E PS L++APTRELA QIER+ ++ ++ V + G
Sbjct: 261 AAFLLPVIMKV------LNETETPSALILAPTRELAIQIERQAKELMAGLPNMRTVLLVG 314
Query: 706 GKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQIN 765
G L PQL ++++ ++IATPGRL + + ++S+ L + VV+DE D ML +GF+ Q+
Sbjct: 315 GLPLPPQLHRLKQSVKVIIATPGRLLEILRQSSVQLHGIKIVVVDEVDTMLKMGFQQQVL 374
Query: 766 KTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDED 825
I+ + QT++ SAT ++ +A + + N V++ +G +L ++ V Q I+ ++E
Sbjct: 375 DILEDISHDHQTILVSATIPVGIEHLANQLLHNFVRITIGEKNLPCSN-VRQIILWVEEP 433
Query: 826 EKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSC-SLYGDLSQEDREIA 884
KK L E ++ + V+VF+ K +S + C S++ + SQ +R
Sbjct: 434 SKKKKLFEILNDKKLFKPPVLVFVDCKLGADLLSDAVHKITGLQCTSMHSEKSQVERTAI 493
Query: 885 LEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
L+ + + V+T V RGLD+ ++ V+N+D PS ++EYVH+VGR G
Sbjct: 494 LQGLLQEKYEVIVSTGVLGRGLDLVNVKLVVNFDMPSSMDEYVHQVGRAG 543
Score = 37 (18.1 bits), Expect = 2.5e-55, Sum P(2) = 2.5e-55
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 52 SVSVVTSDGQIDENPDFQIPNPVTS 76
S TS + D N Q PVT+
Sbjct: 44 SAGTATSTSKCDSNEVVQHTEPVTA 68
Score = 37 (18.1 bits), Expect = 2.8e-52, Sum P(2) = 2.8e-52
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 572 SVSVVTSDGQIDENPDFQIPNPVTS 596
S TS + D N Q PVT+
Sbjct: 44 SAGTATSTSKCDSNEVVQHTEPVTA 68
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 576 (207.8 bits), Expect = 2.5e-55, P = 2.5e-55
Identities = 129/371 (34%), Positives = 216/371 (58%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 146
+L+ + + + TPSPIQAQA P ++SG D++ AQTGTGKT F LP L L ++ +
Sbjct: 17 LLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLL--QRLSSSKGN 74
Query: 147 ERAGPSV--LVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHIL 203
+ + +V L++ PTRELA QI + Y L ++ V+GG +I PQ+ ++R+G +L
Sbjct: 75 KVSSNNVRALILTPTRELAAQISESIEVYGKYLNLHSMVVFGGVKINPQIARLRQGVDVL 134
Query: 204 IATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSAT 263
+ATPGRL D ++ ++ + +LDEADRMLD+GF I K + +RQ ++ SAT
Sbjct: 135 VATPGRLLDLYNQRAVKFSQLEVFILDEADRMLDMGFIRDIKKLMTALPKDRQNLLFSAT 194
Query: 264 WNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERD 323
++ +++ +AK + NP++++V + + A VTQ + +D+ K L +
Sbjct: 195 FSPEIRALAKGMVNNPLEISVDAENSTA-EKVTQWLTAVDKKRKPAVLTHLIK--ENNWQ 251
Query: 324 KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 383
+V+VF K + ++ L + + +++G+ SQ R AL G +I VATD+A+
Sbjct: 252 QVLVFTKTKHGANKLTKHLEAEGLTAAAIHGNKSQGARTKALAAFKDGSVKILVATDIAA 311
Query: 384 RGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD----WSHAHEIIP 439
RG+D+ L V+N+D P+ E+YVHR+GRT RAG +G++++L+ + W H I
Sbjct: 312 RGIDIDLLPQVVNFDLPNVPEDYVHRIGRTARAGNTGQALSLVCADELDLLWGIEHVIQQ 371
Query: 440 ILEEGGHESYM 450
+E E ++
Sbjct: 372 HIERKVIEKFI 382
Score = 539 (194.8 bits), Expect = 2.9e-51, P = 2.9e-51
Identities = 118/330 (35%), Positives = 196/330 (59%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 666
+L+ + + + TPSPIQAQA P ++SG D++ AQTGTGKT F LP L L ++ +
Sbjct: 17 LLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLL--QRLSSSKGN 74
Query: 667 ERAGPSV--LVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHIL 723
+ + +V L++ PTRELA QI + Y L ++ V+GG ++ PQ+ ++R+G +L
Sbjct: 75 KVSSNNVRALILTPTRELAAQISESIEVYGKYLNLHSMVVFGGVKINPQIARLRQGVDVL 134
Query: 724 IATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSAT 783
+ATPGRL D ++ ++ + +LDEADRMLD+GF I K + +RQ ++ SAT
Sbjct: 135 VATPGRLLDLYNQRAVKFSQLEVFILDEADRMLDMGFIRDIKKLMTALPKDRQNLLFSAT 194
Query: 784 WNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERD 843
++ +++ +AK + NP++++V + + A VTQ + +D+ K L +
Sbjct: 195 FSPEIRALAKGMVNNPLEISVDAENSTA-EKVTQWLTAVDKKRKPAVLTHLIK--ENNWQ 251
Query: 844 KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 903
+V+VF K + ++ L + + +++G+ SQ R AL G +I VATD+A+
Sbjct: 252 QVLVFTKTKHGANKLTKHLEAEGLTAAAIHGNKSQGARTKALAAFKDGSVKILVATDIAA 311
Query: 904 RGLDVPDLTHVINYDFPSHIEEYVHRVGRT 933
RG+D+ L V+N+D P+ E+YVHR+GRT
Sbjct: 312 RGIDIDLLPQVVNFDLPNVPEDYVHRIGRT 341
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 575 (207.5 bits), Expect = 3.2e-55, P = 3.2e-55
Identities = 125/347 (36%), Positives = 204/347 (58%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 146
+L+ + ++ P+ IQ Q+ P++++ HD++ AQTGTGKT AF LP ++ + P
Sbjct: 16 LLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALP-ILQQLISVQPCK 74
Query: 147 ERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKEIEPQLEKIREGCHILIA 205
LV+ PTRELA Q+ + + + YGG + Q+ +++ G ILIA
Sbjct: 75 PEL--RALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELKVGVDILIA 132
Query: 206 TPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWN 265
TPGRL D + S+ L + +V DEADRMLD+GF+ +I++ + Y+ +QT++ SAT+
Sbjct: 133 TPGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTKQTLLFSATFA 192
Query: 266 KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKV 325
D+ +++K +V P V + + AA V Q + +D D K++ L F + +V
Sbjct: 193 DDIYKMSKNILVEPKMVEIDEKNKAADD-VEQLVYGVDADRKRE-LTSFLIGSRNWK-QV 249
Query: 326 MVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRG 385
+VF K ++ ++ KS +++GD SQ RE AL + G R +ATDVA+RG
Sbjct: 250 LVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRALIATDVAARG 309
Query: 386 LDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTR-KDW 431
+D+ L+HVINY+ P + E+YVHR+GRT RAG SG +++L++ ++W
Sbjct: 310 IDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGEEW 356
Score = 539 (194.8 bits), Expect = 2.9e-51, P = 2.9e-51
Identities = 118/328 (35%), Positives = 190/328 (57%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 666
+L+ + ++ P+ IQ Q+ P++++ HD++ AQTGTGKT AF LP ++ + P
Sbjct: 16 LLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALP-ILQQLISVQPCK 74
Query: 667 ERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKELEPQLEKIREGCHILIA 725
LV+ PTRELA Q+ + + + YGG + Q+ +++ G ILIA
Sbjct: 75 PEL--RALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELKVGVDILIA 132
Query: 726 TPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWN 785
TPGRL D + S+ L + +V DEADRMLD+GF+ +I++ + Y+ +QT++ SAT+
Sbjct: 133 TPGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTKQTLLFSATFA 192
Query: 786 KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKV 845
D+ +++K +V P V + + AA V Q + +D D K++ L F + +V
Sbjct: 193 DDIYKMSKNILVEPKMVEIDEKNKAADD-VEQLVYGVDADRKRE-LTSFLIGSRNWK-QV 249
Query: 846 MVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRG 905
+VF K ++ ++ KS +++GD SQ RE AL + G R +ATDVA+RG
Sbjct: 250 LVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRALIATDVAARG 309
Query: 906 LDVPDLTHVINYDFPSHIEEYVHRVGRT 933
+D+ L+HVINY+ P + E+YVHR+GRT
Sbjct: 310 IDIKGLSHVINYELPYNAEDYVHRIGRT 337
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 575 (207.5 bits), Expect = 3.2e-55, P = 3.2e-55
Identities = 125/347 (36%), Positives = 204/347 (58%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 146
+L+ + ++ P+ IQ Q+ P++++ HD++ AQTGTGKT AF LP ++ + P
Sbjct: 16 LLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALP-ILQQLISVQPCK 74
Query: 147 ERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKEIEPQLEKIREGCHILIA 205
LV+ PTRELA Q+ + + + YGG + Q+ +++ G ILIA
Sbjct: 75 PEL--RALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELKVGVDILIA 132
Query: 206 TPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWN 265
TPGRL D + S+ L + +V DEADRMLD+GF+ +I++ + Y+ +QT++ SAT+
Sbjct: 133 TPGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTKQTLLFSATFA 192
Query: 266 KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKV 325
D+ +++K +V P V + + AA V Q + +D D K++ L F + +V
Sbjct: 193 DDIYKMSKNILVEPKMVEIDEKNKAADD-VEQLVYGVDADRKRE-LTSFLIGSRNWK-QV 249
Query: 326 MVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRG 385
+VF K ++ ++ KS +++GD SQ RE AL + G R +ATDVA+RG
Sbjct: 250 LVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRALIATDVAARG 309
Query: 386 LDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTR-KDW 431
+D+ L+HVINY+ P + E+YVHR+GRT RAG SG +++L++ ++W
Sbjct: 310 IDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGEEW 356
Score = 539 (194.8 bits), Expect = 2.9e-51, P = 2.9e-51
Identities = 118/328 (35%), Positives = 190/328 (57%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 666
+L+ + ++ P+ IQ Q+ P++++ HD++ AQTGTGKT AF LP ++ + P
Sbjct: 16 LLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALP-ILQQLISVQPCK 74
Query: 667 ERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKELEPQLEKIREGCHILIA 725
LV+ PTRELA Q+ + + + YGG + Q+ +++ G ILIA
Sbjct: 75 PEL--RALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELKVGVDILIA 132
Query: 726 TPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWN 785
TPGRL D + S+ L + +V DEADRMLD+GF+ +I++ + Y+ +QT++ SAT+
Sbjct: 133 TPGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTKQTLLFSATFA 192
Query: 786 KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKV 845
D+ +++K +V P V + + AA V Q + +D D K++ L F + +V
Sbjct: 193 DDIYKMSKNILVEPKMVEIDEKNKAADD-VEQLVYGVDADRKRE-LTSFLIGSRNWK-QV 249
Query: 846 MVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRG 905
+VF K ++ ++ KS +++GD SQ RE AL + G R +ATDVA+RG
Sbjct: 250 LVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRALIATDVAARG 309
Query: 906 LDVPDLTHVINYDFPSHIEEYVHRVGRT 933
+D+ L+HVINY+ P + E+YVHR+GRT
Sbjct: 310 IDIKGLSHVINYELPYNAEDYVHRIGRT 337
>UNIPROTKB|E2RRQ7 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AAEX03026295
Ensembl:ENSCAFT00000022643 Uniprot:E2RRQ7
Length = 706
Score = 572 (206.4 bits), Expect = 6.9e-55, P = 6.9e-55
Identities = 121/303 (39%), Positives = 184/303 (60%)
Query: 151 PSVLVMAPTRELATQIEREVNKIDYKGLKAVCV-YGGKEIEPQLEKIREGCHILIATPGR 209
P LV+APTRELA QI E K Y+ CV YGG +I Q+ + GCH+L+ATPGR
Sbjct: 309 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 368
Query: 210 LNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT--SIYINPN--RQTVMTSATWN 265
L D + R I L ++VLDEADRMLD+GFEPQI + + P R T+M SAT+
Sbjct: 369 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFP 428
Query: 266 KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKV 325
K++Q +A+ ++ + + VG + + + +TQK++ ++E +K+ +L++ + + +D +
Sbjct: 429 KEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEESDKRSFLLDLLNATESGKDSL 487
Query: 326 -MVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASR 384
+VF+ K ++ L + S++GD SQ DRE AL SG + I VAT VA+R
Sbjct: 488 TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAAR 547
Query: 385 GLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEG 444
GLD+ ++ HVIN+D PS IEEYVHR+GRTGR G G + + ++ + +++ +L E
Sbjct: 548 GLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEA 607
Query: 445 GHE 447
E
Sbjct: 608 KQE 610
Score = 543 (196.2 bits), Expect = 1.1e-51, P = 1.1e-51
Identities = 114/270 (42%), Positives = 169/270 (62%)
Query: 671 PSVLVMAPTRELATQIEREVNKIDYKGLKAVCV-YGGKELEPQLEKIREGCHILIATPGR 729
P LV+APTRELA QI E K Y+ CV YGG ++ Q+ + GCH+L+ATPGR
Sbjct: 309 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 368
Query: 730 LNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT--SIYINPN--RQTVMTSATWN 785
L D + R I L ++VLDEADRMLD+GFEPQI + + P R T+M SAT+
Sbjct: 369 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFP 428
Query: 786 KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKV 845
K++Q +A+ ++ + + VG + + + +TQK++ ++E +K+ +L++ + + +D +
Sbjct: 429 KEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEESDKRSFLLDLLNATESGKDSL 487
Query: 846 -MVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASR 904
+VF+ K ++ L + S++GD SQ DRE AL SG + I VAT VA+R
Sbjct: 488 TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAAR 547
Query: 905 GLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
GLD+ ++ HVIN+D PS IEEYVHR+GRTG
Sbjct: 548 GLDISNVKHVINFDLPSDIEEYVHRIGRTG 577
Score = 356 (130.4 bits), Expect = 3.9e-29, P = 3.9e-29
Identities = 87/255 (34%), Positives = 137/255 (53%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH------- 139
I+ +E +T P+P+Q A PI+ D++ AQTG+GKT AFLLP L +
Sbjct: 233 IMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEA 292
Query: 140 LQTTPISERAG-----PSVLVMAPTRELATQIEREVNKIDYKGLKAVCV-YGGKEIEPQL 193
L+ + R G P LV+APTRELA QI E K Y+ CV YGG +I Q+
Sbjct: 293 LRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQI 352
Query: 194 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINP 253
+ GCH+L+ATPGRL D + R I L ++VLDEADRMLD+GFEPQI +
Sbjct: 353 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTM 412
Query: 254 NRQTVMTSATWNKDVQRVAKKYMVNPVK--VNVGSLDLAAT-HTVTQKIIILDEDEKKDW 310
+ V + ++ + + + + + + + +T +TQK++ ++E +K+ +
Sbjct: 413 PPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSF 472
Query: 311 LMEFFDNMDEERDKV 325
L++ + + +D +
Sbjct: 473 LLDLLNATESGKDSL 487
Score = 354 (129.7 bits), Expect = 6.5e-29, P = 6.5e-29
Identities = 86/255 (33%), Positives = 137/255 (53%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH------- 659
I+ +E +T P+P+Q A PI+ D++ AQTG+GKT AFLLP L +
Sbjct: 233 IMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEA 292
Query: 660 LQTTPISERAG-----PSVLVMAPTRELATQIEREVNKIDYKGLKAVCV-YGGKELEPQL 713
L+ + R G P LV+APTRELA QI E K Y+ CV YGG ++ Q+
Sbjct: 293 LRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQI 352
Query: 714 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINP 773
+ GCH+L+ATPGRL D + R I L ++VLDEADRMLD+GFEPQI +
Sbjct: 353 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTM 412
Query: 774 NRQTVMTSATWNKDVQRVAKKYMVNPVK--VNVGSLDLAAT-HTVTQKIIILDEDEKKDW 830
+ V + ++ + + + + + + + +T +TQK++ ++E +K+ +
Sbjct: 413 PPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSF 472
Query: 831 LMEFFDNMDEERDKV 845
L++ + + +D +
Sbjct: 473 LLDLLNATESGKDSL 487
>UNIPROTKB|Q8EE19 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 572 (206.4 bits), Expect = 6.9e-55, P = 6.9e-55
Identities = 127/356 (35%), Positives = 206/356 (57%)
Query: 77 FKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALI 136
F Q H +++ + L + +P+PIQ QA P +++G +++ AQTGTGKT +F+LP L+
Sbjct: 3 FSQLGLH-SALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLP-LL 60
Query: 137 HTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKEIEPQLEK 195
H I + S+ ++ PTRELA Q+E+ +N+ Y L A+ +YGG + PQ ++
Sbjct: 61 HRFADAPKIRPKRVRSI-ILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQKKR 119
Query: 196 IREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNR 255
+ EG +L+ATPGRL D ++ +I VS +VLDEADRMLD+GF IN + R
Sbjct: 120 LIEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQR 179
Query: 256 QTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFF 315
Q ++ SAT +K V+ +AK + + +++ + + A+T + Q + +D+D K L
Sbjct: 180 QNLLFSATLSKQVKALAKTAIPDAIEIEISRKNAASTQ-IDQWLTTVDKDRKSALLSHLI 238
Query: 316 DNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARI 375
+ + ++F+ K + + S L + + + + SQ RE L D +G
Sbjct: 239 K--ENNWAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKVPF 296
Query: 376 CVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDW 431
VAT V SRG+D+ L VINYD P ++Y+HR+GRTGRAG GE+I+ +++ D+
Sbjct: 297 LVATGVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDF 352
Score = 530 (191.6 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 120/339 (35%), Positives = 193/339 (56%)
Query: 597 FKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALI 656
F Q H +++ + L + +P+PIQ QA P +++G +++ AQTGTGKT +F+LP L+
Sbjct: 3 FSQLGLH-SALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLP-LL 60
Query: 657 HTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKELEPQLEK 715
H I + S+ ++ PTRELA Q+E+ +N+ Y L A+ +YGG + PQ ++
Sbjct: 61 HRFADAPKIRPKRVRSI-ILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQKKR 119
Query: 716 IREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNR 775
+ EG +L+ATPGRL D ++ +I VS +VLDEADRMLD+GF IN + R
Sbjct: 120 LIEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQR 179
Query: 776 QTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFF 835
Q ++ SAT +K V+ +AK + + +++ + + A+T + Q + +D+D K L
Sbjct: 180 QNLLFSATLSKQVKALAKTAIPDAIEIEISRKNAASTQ-IDQWLTTVDKDRKSALLSHLI 238
Query: 836 DNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARI 895
+ + ++F+ K + + S L + + + + SQ RE L D +G
Sbjct: 239 K--ENNWAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKVPF 296
Query: 896 CVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
VAT V SRG+D+ L VINYD P ++Y+HR+GRTG
Sbjct: 297 LVATGVVSRGIDIDALERVINYDLPDEADDYIHRIGRTG 335
>TIGR_CMR|SO_2571 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 572 (206.4 bits), Expect = 6.9e-55, P = 6.9e-55
Identities = 127/356 (35%), Positives = 206/356 (57%)
Query: 77 FKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALI 136
F Q H +++ + L + +P+PIQ QA P +++G +++ AQTGTGKT +F+LP L+
Sbjct: 3 FSQLGLH-SALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLP-LL 60
Query: 137 HTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKEIEPQLEK 195
H I + S+ ++ PTRELA Q+E+ +N+ Y L A+ +YGG + PQ ++
Sbjct: 61 HRFADAPKIRPKRVRSI-ILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQKKR 119
Query: 196 IREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNR 255
+ EG +L+ATPGRL D ++ +I VS +VLDEADRMLD+GF IN + R
Sbjct: 120 LIEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQR 179
Query: 256 QTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFF 315
Q ++ SAT +K V+ +AK + + +++ + + A+T + Q + +D+D K L
Sbjct: 180 QNLLFSATLSKQVKALAKTAIPDAIEIEISRKNAASTQ-IDQWLTTVDKDRKSALLSHLI 238
Query: 316 DNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARI 375
+ + ++F+ K + + S L + + + + SQ RE L D +G
Sbjct: 239 K--ENNWAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKVPF 296
Query: 376 CVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDW 431
VAT V SRG+D+ L VINYD P ++Y+HR+GRTGRAG GE+I+ +++ D+
Sbjct: 297 LVATGVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDF 352
Score = 530 (191.6 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 120/339 (35%), Positives = 193/339 (56%)
Query: 597 FKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALI 656
F Q H +++ + L + +P+PIQ QA P +++G +++ AQTGTGKT +F+LP L+
Sbjct: 3 FSQLGLH-SALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLP-LL 60
Query: 657 HTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKELEPQLEK 715
H I + S+ ++ PTRELA Q+E+ +N+ Y L A+ +YGG + PQ ++
Sbjct: 61 HRFADAPKIRPKRVRSI-ILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQKKR 119
Query: 716 IREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNR 775
+ EG +L+ATPGRL D ++ +I VS +VLDEADRMLD+GF IN + R
Sbjct: 120 LIEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQR 179
Query: 776 QTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFF 835
Q ++ SAT +K V+ +AK + + +++ + + A+T + Q + +D+D K L
Sbjct: 180 QNLLFSATLSKQVKALAKTAIPDAIEIEISRKNAASTQ-IDQWLTTVDKDRKSALLSHLI 238
Query: 836 DNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARI 895
+ + ++F+ K + + S L + + + + SQ RE L D +G
Sbjct: 239 K--ENNWAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKVPF 296
Query: 896 CVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
VAT V SRG+D+ L VINYD P ++Y+HR+GRTG
Sbjct: 297 LVATGVVSRGIDIDALERVINYDLPDEADDYIHRIGRTG 335
>UNIPROTKB|Q9BQ39 [details] [associations]
symbol:DDX50 "ATP-dependent RNA helicase DDX50"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005730
EMBL:CH471083 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:AL359844 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OrthoDB:EOG46143T EMBL:AF334103 EMBL:BC000210
EMBL:BC000272 EMBL:BC018637 IPI:IPI00031554 RefSeq:NP_076950.1
UniGene:Hs.522984 PDB:2E29 PDBsum:2E29 ProteinModelPortal:Q9BQ39
SMR:Q9BQ39 IntAct:Q9BQ39 STRING:Q9BQ39 PhosphoSite:Q9BQ39
DMDM:55976580 SWISS-2DPAGE:Q9BQ39 PaxDb:Q9BQ39 PeptideAtlas:Q9BQ39
PRIDE:Q9BQ39 DNASU:79009 Ensembl:ENST00000373585 GeneID:79009
KEGG:hsa:79009 UCSC:uc001jou.3 CTD:79009 GeneCards:GC10P070661
HGNC:HGNC:17906 HPA:HPA037388 MIM:610373 neXtProt:NX_Q9BQ39
PharmGKB:PA134948525 InParanoid:Q9BQ39 KO:K13183 OMA:GDTEEGC
PhylomeDB:Q9BQ39 ChiTaRS:DDX50 EvolutionaryTrace:Q9BQ39
GenomeRNAi:79009 NextBio:67657 ArrayExpress:Q9BQ39 Bgee:Q9BQ39
CleanEx:HS_DDX50 Genevestigator:Q9BQ39 Uniprot:Q9BQ39
Length = 737
Score = 554 (200.1 bits), Expect = 7.8e-55, Sum P(2) = 7.8e-55
Identities = 138/394 (35%), Positives = 213/394 (54%)
Query: 41 VEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQ--AFQHYP---EILRQLENLS 95
++ + KK+ +S S+ TS + +N ++ +T ++ AF ++P E ++ L+
Sbjct: 101 IDEYEKKSKRVS-SLDTSTHKSSDN---KLEETLTREQKEGAFSNFPISEETIKLLKGRG 156
Query: 96 FTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLV 155
T PIQ + + + G D+I A+TGTGKTF+F +P + I + P VLV
Sbjct: 157 VTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLV 216
Query: 156 MAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVS 215
+APTRELA Q+ ++ I K L C YGG + Q+ IR G IL+ TPGR+ D +
Sbjct: 217 LAPTRELANQVAKDFKDITRK-LSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQ 275
Query: 216 RASIDLKAVSFVVLDEADRMLDLGFEPQIN-------KTSIYINPNRQTVMTSATWNKDV 268
+DL + VVLDE D+MLDLGF Q+ KT NP QT++ SAT + V
Sbjct: 276 SGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNP--QTLLFSATCPQWV 333
Query: 269 QRVAKKYMVNPVK-VN-VGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVM 326
+VAKKYM + + V+ VG + A TV I ++ + + + +
Sbjct: 334 YKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAI 393
Query: 327 VFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGL 386
+F K +V+ M+ + + C L+GD++Q REI L+ G ++ VAT+VA+RGL
Sbjct: 394 IFCETKKNVTEMAMNPHIKQNAQC-LHGDIAQSQREITLKGFREGSFKVLVATNVAARGL 452
Query: 387 DVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSG 420
D+P++ VI P +E Y+HR GRTGRAG++G
Sbjct: 453 DIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTG 486
Score = 530 (191.6 bits), Expect = 5.1e-49, P = 5.1e-49
Identities = 134/388 (34%), Positives = 207/388 (53%)
Query: 561 VEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQ--AFQHYP---EILRQLENLS 615
++ + KK+ +S S+ TS + +N ++ +T ++ AF ++P E ++ L+
Sbjct: 101 IDEYEKKSKRVS-SLDTSTHKSSDN---KLEETLTREQKEGAFSNFPISEETIKLLKGRG 156
Query: 616 FTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLV 675
T PIQ + + + G D+I A+TGTGKTF+F +P + I + P VLV
Sbjct: 157 VTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLV 216
Query: 676 MAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVS 735
+APTRELA Q+ ++ I K L C YGG + Q+ IR G IL+ TPGR+ D +
Sbjct: 217 LAPTRELANQVAKDFKDITRK-LSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQ 275
Query: 736 RASIDLKAVSFVVLDEADRMLDLGFEPQIN-------KTSIYINPNRQTVMTSATWNKDV 788
+DL + VVLDE D+MLDLGF Q+ KT NP QT++ SAT + V
Sbjct: 276 SGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNP--QTLLFSATCPQWV 333
Query: 789 QRVAKKYMVNPVK-VN-VGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVM 846
+VAKKYM + + V+ VG + A TV I ++ + + + +
Sbjct: 334 YKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAI 393
Query: 847 VFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGL 906
+F K +V+ M+ + + C L+GD++Q REI L+ G ++ VAT+VA+RGL
Sbjct: 394 IFCETKKNVTEMAMNPHIKQNAQC-LHGDIAQSQREITLKGFREGSFKVLVATNVAARGL 452
Query: 907 DVPDLTHVINYDFPSHIEEYVHRVGRTG 934
D+P++ VI P +E Y+HR GRTG
Sbjct: 453 DIPEVDLVIQSSPPQDVESYIHRSGRTG 480
Score = 42 (19.8 bits), Expect = 7.8e-55, Sum P(2) = 7.8e-55
Identities = 7/10 (70%), Positives = 10/10 (100%)
Query: 411 GRTGRAGKSG 420
GR+GR+G+SG
Sbjct: 685 GRSGRSGRSG 694
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 571 (206.1 bits), Expect = 8.9e-55, P = 8.9e-55
Identities = 142/436 (32%), Positives = 235/436 (53%)
Query: 2 EELMALSDRKERDKWAREPKII---KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTS 58
+EL +L+++ + K+I K E + T E+ + + K+ +V T
Sbjct: 14 DELTSLAEKIRAKALENQKKLIEAEKEGGSESDSEEDATAEKKKVLKSKSKS---TVSTQ 70
Query: 59 DGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIG 118
+ +E+ F+ SF + PE+++ +NL+++ P+PIQ++A P + GHD+IG
Sbjct: 71 NENTNEDESFE------SFSE-LNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIG 123
Query: 119 IAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI-DYKG 177
+AQTG+GKT AF +P L P ++APTRELA QI+ + + G
Sbjct: 124 LAQTGSGKTAAFAIPILNRLWHDQEPYY------ACILAPTRELAQQIKETFDSLGSLMG 177
Query: 178 LKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRAS-IDLKAVSFVVLDEADRML 236
+++ C+ GG + Q + HI+IATPGRL D + L+ + F+V+DEADR+L
Sbjct: 178 VRSTCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLL 237
Query: 237 DLGFEPQINKT-SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTV 295
D+ F P +++ I R T + SAT + ++ + + NPVK V + T+
Sbjct: 238 DMEFGPVLDRILKIIPTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSN-KYQTVDTL 296
Query: 296 TQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGR-KASVSAMSSDLACQYRKSCSLYG 354
Q ++++ K +L+ ++E K M+ R KA+ +S + +L+G
Sbjct: 297 VQTLMVVPGGLKNTYLIYL---LNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHG 353
Query: 355 DLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 414
DL+Q R +L+ +G I VATDVA+RGLD+P + V+NYD P + Y+HRVGRT
Sbjct: 354 DLNQNQRMGSLDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTA 413
Query: 415 RAGKSGESITLMTRKD 430
RAG+SG+SI+L+++ D
Sbjct: 414 RAGRSGKSISLVSQYD 429
Score = 524 (189.5 bits), Expect = 1.3e-49, P = 1.3e-49
Identities = 133/419 (31%), Positives = 220/419 (52%)
Query: 522 EELMALSDRKERDKWAREPKII---KNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTS 578
+EL +L+++ + K+I K E + T E+ + + K+ +V T
Sbjct: 14 DELTSLAEKIRAKALENQKKLIEAEKEGGSESDSEEDATAEKKKVLKSKSKS---TVSTQ 70
Query: 579 DGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIG 638
+ +E+ F+ SF + PE+++ +NL+++ P+PIQ++A P + GHD+IG
Sbjct: 71 NENTNEDESFE------SFSE-LNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIG 123
Query: 639 IAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI-DYKG 697
+AQTG+GKT AF +P L P ++APTRELA QI+ + + G
Sbjct: 124 LAQTGSGKTAAFAIPILNRLWHDQEPYY------ACILAPTRELAQQIKETFDSLGSLMG 177
Query: 698 LKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRAS-IDLKAVSFVVLDEADRML 756
+++ C+ GG + Q + HI+IATPGRL D + L+ + F+V+DEADR+L
Sbjct: 178 VRSTCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLL 237
Query: 757 DLGFEPQINKT-SIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTV 815
D+ F P +++ I R T + SAT + ++ + + NPVK V + T+
Sbjct: 238 DMEFGPVLDRILKIIPTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSN-KYQTVDTL 296
Query: 816 TQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGR-KASVSAMSSDLACQYRKSCSLYG 874
Q ++++ K +L+ ++E K M+ R KA+ +S + +L+G
Sbjct: 297 VQTLMVVPGGLKNTYLIYL---LNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHG 353
Query: 875 DLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRT 933
DL+Q R +L+ +G I VATDVA+RGLD+P + V+NYD P + Y+HRVGRT
Sbjct: 354 DLNQNQRMGSLDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRT 412
>UNIPROTKB|Q9NR30 [details] [associations]
symbol:DDX21 "Nucleolar RNA helicase 2" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0009615 "response
to virus" evidence=IEA] [GO:0043330 "response to exogenous dsRNA"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:CH471083 GO:GO:0009615 GO:GO:0003725
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0043330 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:U41387 EMBL:AF261903 EMBL:AF261917 EMBL:AF261904 EMBL:AF261905
EMBL:AF261906 EMBL:AF261907 EMBL:AF261908 EMBL:AF261909
EMBL:AF261910 EMBL:AF261911 EMBL:AF261912 EMBL:AF261913
EMBL:AF261914 EMBL:AF261915 EMBL:AF261916 EMBL:AK315585
EMBL:CR749598 EMBL:AL359844 EMBL:BC008071 IPI:IPI00015953
IPI:IPI00477179 PIR:PC6010 RefSeq:NP_001243839.1 RefSeq:NP_004719.2
UniGene:Hs.223141 ProteinModelPortal:Q9NR30 SMR:Q9NR30
IntAct:Q9NR30 MINT:MINT-231639 STRING:Q9NR30 PhosphoSite:Q9NR30
DMDM:76803555 SWISS-2DPAGE:Q9NR30 PaxDb:Q9NR30 PeptideAtlas:Q9NR30
PRIDE:Q9NR30 DNASU:9188 Ensembl:ENST00000354185 GeneID:9188
KEGG:hsa:9188 UCSC:uc001jov.1 CTD:9188 GeneCards:GC10P070715
H-InvDB:HIX0008880 HGNC:HGNC:2744 HPA:HPA036592 MIM:606357
neXtProt:NX_Q9NR30 PharmGKB:PA27210 HOGENOM:HOG000268805
HOVERGEN:HBG051331 InParanoid:Q9NR30 OMA:EILCVAY OrthoDB:EOG46143T
PhylomeDB:Q9NR30 ChiTaRS:DDX21 GenomeRNAi:9188 NextBio:34453
ArrayExpress:Q9NR30 Bgee:Q9NR30 CleanEx:HS_DDX21
Genevestigator:Q9NR30 GermOnline:ENSG00000165732 Uniprot:Q9NR30
Length = 783
Score = 564 (203.6 bits), Expect = 9.8e-55, Sum P(2) = 9.8e-55
Identities = 144/439 (32%), Positives = 229/439 (52%)
Query: 17 AREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTS 76
A +PK +K + + E +P+ F D + S S+ + N + + PV
Sbjct: 127 APKPKKMKKEKEMNGETREKSPKLKNGFPHPEPDCNPSEAASE---ESNSEIEQEIPVEQ 183
Query: 77 FKQAFQHYP---EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLP 133
+ AF ++P E ++ L+ T PIQA+ + + SG D+I A+TGTGKTF+F +P
Sbjct: 184 KEGAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIP 243
Query: 134 ALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQL 193
+ H + P VLV+APTRELA Q+ ++ + I K L C YGG Q
Sbjct: 244 LIEKLHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKK-LSVACFYGGTPYGGQF 302
Query: 194 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT-SI-Y- 250
E++R G IL+ TPGR+ D + +DL + VVLDE D+MLD+GF Q+ + S+ Y
Sbjct: 303 ERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYK 362
Query: 251 --INPNRQTVMTSATWNKDVQRVAKKYMVNPVK-VN-VGSLDLAATHTVTQKIIILDEDE 306
N QT++ SAT V VAKKYM + + V+ +G TV I +
Sbjct: 363 KDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQ 422
Query: 307 KKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALE 366
+ + + + + ++F K +S + A + + + SL+GD+ Q+ REI L+
Sbjct: 423 RAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIK-QDAQSLHGDIPQKQREITLK 481
Query: 367 DITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLM 426
+G + VAT+VA+RGLD+P++ VI P +E Y+HR GRTGRAG++G I
Sbjct: 482 GFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFY 541
Query: 427 TRKDWSHAHEIIPILEEGG 445
K+ ++++ + ++ G
Sbjct: 542 QHKE---EYQLVQVEQKAG 557
Score = 532 (192.3 bits), Expect = 2.7e-50, Sum P(2) = 2.7e-50
Identities = 137/408 (33%), Positives = 212/408 (51%)
Query: 537 AREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTS 596
A +PK +K + + E +P+ F D + S S+ + N + + PV
Sbjct: 127 APKPKKMKKEKEMNGETREKSPKLKNGFPHPEPDCNPSEAASE---ESNSEIEQEIPVEQ 183
Query: 597 FKQAFQHYP---EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLP 653
+ AF ++P E ++ L+ T PIQA+ + + SG D+I A+TGTGKTF+F +P
Sbjct: 184 KEGAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIP 243
Query: 654 ALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQL 713
+ H + P VLV+APTRELA Q+ ++ + I K L C YGG Q
Sbjct: 244 LIEKLHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKK-LSVACFYGGTPYGGQF 302
Query: 714 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKT-SI-Y- 770
E++R G IL+ TPGR+ D + +DL + VVLDE D+MLD+GF Q+ + S+ Y
Sbjct: 303 ERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYK 362
Query: 771 --INPNRQTVMTSATWNKDVQRVAKKYMVNPVK-VN-VGSLDLAATHTVTQKIIILDEDE 826
N QT++ SAT V VAKKYM + + V+ +G TV I +
Sbjct: 363 KDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQ 422
Query: 827 KKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALE 886
+ + + + + ++F K +S + A + + + SL+GD+ Q+ REI L+
Sbjct: 423 RAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIK-QDAQSLHGDIPQKQREITLK 481
Query: 887 DITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
+G + VAT+VA+RGLD+P++ VI P +E Y+HR GRTG
Sbjct: 482 GFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTG 529
Score = 56 (24.8 bits), Expect = 2.7e-50, Sum P(2) = 2.7e-50
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 519 PTMEELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTS 578
P +++ ++ E D PK K KE+P +++P+ ++ RKK I VV+S
Sbjct: 53 PKAKQVKKKAEPSEVDM--NSPKSKKAKKKEEPSQNDISPK-TKSLRKKKEPIEKKVVSS 109
Score = 54 (24.1 bits), Expect = 9.8e-55, Sum P(2) = 9.8e-55
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 20 PKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTS 58
PK K KE+P +++P+ ++ RKK I VV+S
Sbjct: 72 PKSKKAKKKEEPSQNDISPK-TKSLRKKKEPIEKKVVSS 109
>UNIPROTKB|F1SUG8 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 OMA:GDTEEGC
EMBL:CU468175 Ensembl:ENSSSCT00000011216 Uniprot:F1SUG8
Length = 737
Score = 553 (199.7 bits), Expect = 1.0e-54, Sum P(2) = 1.0e-54
Identities = 136/392 (34%), Positives = 207/392 (52%)
Query: 41 VEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYP---EILRQLENLSFT 97
+E + KK+ +S ++ D P+ + + AF ++P E ++ L+ T
Sbjct: 101 IEEYGKKSKRVSSLDSSTHKSSDNKPEESLTREQK--EGAFSNFPISEETIKLLKGRGVT 158
Query: 98 TPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMA 157
PIQ + + + G D+I A+TGTGKTF+F +P + I + P VLV+A
Sbjct: 159 YLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLA 218
Query: 158 PTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRA 217
PTRELA Q+ ++ I K L C YGG + Q+ IR G IL+ TPGR+ D +
Sbjct: 219 PTRELANQVAKDFKDITKK-LSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSG 277
Query: 218 SIDLKAVSFVVLDEADRMLDLGFEPQIN-------KTSIYINPNRQTVMTSATWNKDVQR 270
+DL + VVLDE D+MLDLGF Q+ KT NP QT++ SAT + V +
Sbjct: 278 RLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNP--QTLLFSATCPQWVYK 335
Query: 271 VAKKYMVNPVK-VN-VGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVF 328
VAKKYM + + V+ VG + A TV I ++ + + + ++F
Sbjct: 336 VAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIF 395
Query: 329 MGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDV 388
K +V+ M+ + + C L+GD++Q REI L+ G ++ VAT+VA+RGLD+
Sbjct: 396 CETKKNVTEMAMNPHIKQNAQC-LHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDI 454
Query: 389 PDLTHVINYDFPSHIEEYVHRVGRTGRAGKSG 420
P++ VI P +E Y+HR GRTGRAG++G
Sbjct: 455 PEVDLVIQSSPPQDVESYIHRSGRTGRAGRTG 486
Score = 529 (191.3 bits), Expect = 6.9e-49, P = 6.9e-49
Identities = 132/386 (34%), Positives = 201/386 (52%)
Query: 561 VEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYP---EILRQLENLSFT 617
+E + KK+ +S ++ D P+ + + AF ++P E ++ L+ T
Sbjct: 101 IEEYGKKSKRVSSLDSSTHKSSDNKPEESLTREQK--EGAFSNFPISEETIKLLKGRGVT 158
Query: 618 TPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMA 677
PIQ + + + G D+I A+TGTGKTF+F +P + I + P VLV+A
Sbjct: 159 YLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLA 218
Query: 678 PTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRA 737
PTRELA Q+ ++ I K L C YGG + Q+ IR G IL+ TPGR+ D +
Sbjct: 219 PTRELANQVAKDFKDITKK-LSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSG 277
Query: 738 SIDLKAVSFVVLDEADRMLDLGFEPQIN-------KTSIYINPNRQTVMTSATWNKDVQR 790
+DL + VVLDE D+MLDLGF Q+ KT NP QT++ SAT + V +
Sbjct: 278 RLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNP--QTLLFSATCPQWVYK 335
Query: 791 VAKKYMVNPVK-VN-VGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVF 848
VAKKYM + + V+ VG + A TV I ++ + + + ++F
Sbjct: 336 VAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIF 395
Query: 849 MGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDV 908
K +V+ M+ + + C L+GD++Q REI L+ G ++ VAT+VA+RGLD+
Sbjct: 396 CETKKNVTEMAMNPHIKQNAQC-LHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDI 454
Query: 909 PDLTHVINYDFPSHIEEYVHRVGRTG 934
P++ VI P +E Y+HR GRTG
Sbjct: 455 PEVDLVIQSSPPQDVESYIHRSGRTG 480
Score = 42 (19.8 bits), Expect = 1.0e-54, Sum P(2) = 1.0e-54
Identities = 7/10 (70%), Positives = 10/10 (100%)
Query: 411 GRTGRAGKSG 420
GR+GR+G+SG
Sbjct: 685 GRSGRSGRSG 694
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 570 (205.7 bits), Expect = 1.2e-54, P = 1.2e-54
Identities = 132/358 (36%), Positives = 198/358 (55%)
Query: 74 VTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLP 133
++ FK AF I+ ++ + P+PIQ + P L++G+D++GIAQTGTGKT AF LP
Sbjct: 1 MSEFK-AFSLLESIIDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLP 59
Query: 134 ALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKEIEPQ 192
+ I ++ S L++ PTRELA+QI + ++ D GLK VYGG + Q
Sbjct: 60 IINKFGRNKIDIKAKSTRS-LILTPTRELASQIMQNIDDYSDGLGLKTKVVYGGVGRQAQ 118
Query: 193 LEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYIN 252
++ I G IL+ATPGRL D + I+ KA+ VLDEAD MLD+GF + +
Sbjct: 119 VDSIELGLDILVATPGRLLDLIETGDINFKALEVFVLDEADTMLDMGFFKDVQSIISKLP 178
Query: 253 PNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLM 312
+RQT++ SAT +++ +A+ + +P K+ + + + V Q + LD+ K L
Sbjct: 179 KSRQTLLFSATMPAEIEILAEAILTDPTKIQI-TAETVTIDLVNQSVYHLDKSNKVPLLF 237
Query: 313 EFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGY 372
D E KV++F K + L + SL+ +Q RE AL++
Sbjct: 238 NILTKADYE--KVLIFCKTKYGADIIVKALEKASITAASLHSGKTQAVREEALQNFKDST 295
Query: 373 ARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430
R+ VATDVA+RG+DV ++T VINY+ P Y+HR+GRT RAGKSG +I+ D
Sbjct: 296 LRVLVATDVAARGIDVDNITLVINYNLPEDPRNYIHRIGRTARAGKSGMAISFAVEND 353
Score = 532 (192.3 bits), Expect = 1.7e-50, P = 1.7e-50
Identities = 124/341 (36%), Positives = 188/341 (55%)
Query: 594 VTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLP 653
++ FK AF I+ ++ + P+PIQ + P L++G+D++GIAQTGTGKT AF LP
Sbjct: 1 MSEFK-AFSLLESIIDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLP 59
Query: 654 ALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKELEPQ 712
+ I ++ S L++ PTRELA+QI + ++ D GLK VYGG + Q
Sbjct: 60 IINKFGRNKIDIKAKSTRS-LILTPTRELASQIMQNIDDYSDGLGLKTKVVYGGVGRQAQ 118
Query: 713 LEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYIN 772
++ I G IL+ATPGRL D + I+ KA+ VLDEAD MLD+GF + +
Sbjct: 119 VDSIELGLDILVATPGRLLDLIETGDINFKALEVFVLDEADTMLDMGFFKDVQSIISKLP 178
Query: 773 PNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLM 832
+RQT++ SAT +++ +A+ + +P K+ + + + V Q + LD+ K L
Sbjct: 179 KSRQTLLFSATMPAEIEILAEAILTDPTKIQI-TAETVTIDLVNQSVYHLDKSNKVPLLF 237
Query: 833 EFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGY 892
D E KV++F K + L + SL+ +Q RE AL++
Sbjct: 238 NILTKADYE--KVLIFCKTKYGADIIVKALEKASITAASLHSGKTQAVREEALQNFKDST 295
Query: 893 ARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRT 933
R+ VATDVA+RG+DV ++T VINY+ P Y+HR+GRT
Sbjct: 296 LRVLVATDVAARGIDVDNITLVINYNLPEDPRNYIHRIGRT 336
>SGD|S000002428 [details] [associations]
symbol:FAL1 "Nucleolar protein required for maturation of 18S
rRNA" species:4932 "Saccharomyces cerevisiae" [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000462 "maturation of SSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0097078 "FAl1-SGD1 complex" evidence=IPI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002428 GO:GO:0005524
GO:GO:0005730 EMBL:BK006938 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 EMBL:X95966
EMBL:Z49770 GeneTree:ENSGT00680000100003 GO:GO:0000462 KO:K13025
OrthoDB:EOG4HTD1W EMBL:Z74317 EMBL:AY723767 PIR:S54644
RefSeq:NP_010304.3 RefSeq:NP_010309.3 ProteinModelPortal:Q12099
SMR:Q12099 DIP:DIP-4516N IntAct:Q12099 MINT:MINT-503789
STRING:Q12099 PaxDb:Q12099 PeptideAtlas:Q12099 EnsemblFungi:YDR021W
GeneID:851584 GeneID:851590 KEGG:sce:YDR021W KEGG:sce:YDR026C
CYGD:YDR021w KO:K09424 OMA:IFGKQPF NextBio:969055
Genevestigator:Q12099 GermOnline:YDR021W GO:GO:0097078
Uniprot:Q12099
Length = 399
Score = 568 (205.0 bits), Expect = 1.9e-54, P = 1.9e-54
Identities = 129/369 (34%), Positives = 214/369 (57%)
Query: 74 VTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLP 133
V+S ++ ++LR + + F PS IQ++A ++SG D+I AQ+GTGKT F +
Sbjct: 21 VSSTFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIG 80
Query: 134 ALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKEIEPQ 192
L L+ + L+++PTRELA+QI + V + DY + A + GGK ++
Sbjct: 81 LLQAIDLRKKDLQ------ALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDD 134
Query: 193 LEKIRE-GCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLD--LGFEPQINKTSI 249
L+K+++ GC + TPGR+ D + + + + V +VLDEAD +L LGF+ QI
Sbjct: 135 LKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFA 194
Query: 250 YINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKK- 308
+ N Q V+ SAT NKD+ V +K+M +PVK+ V D + + Q ++ +D++E K
Sbjct: 195 KLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILV-KRDEISLEGIKQYVVNVDKEEWKF 253
Query: 309 DWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDI 368
D L + +D++ + ++F K V +S L S++GD+ QE+R+ + D
Sbjct: 254 DTLCDIYDSLTITQ--CVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDF 311
Query: 369 TSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTR 428
+G++R+ ++TDV +RG+DV ++ VINYD P IE Y+HR+GR+GR G+ G +I +T+
Sbjct: 312 RTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITK 371
Query: 429 KDWSHAHEI 437
D + EI
Sbjct: 372 ADLAKLREI 380
Score = 537 (194.1 bits), Expect = 4.9e-51, P = 4.9e-51
Identities = 123/348 (35%), Positives = 202/348 (58%)
Query: 594 VTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLP 653
V+S ++ ++LR + + F PS IQ++A ++SG D+I AQ+GTGKT F +
Sbjct: 21 VSSTFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIG 80
Query: 654 ALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKELEPQ 712
L L+ + L+++PTRELA+QI + V + DY + A + GGK L+
Sbjct: 81 LLQAIDLRKKDLQ------ALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDD 134
Query: 713 LEKIRE-GCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLD--LGFEPQINKTSI 769
L+K+++ GC + TPGR+ D + + + + V +VLDEAD +L LGF+ QI
Sbjct: 135 LKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFA 194
Query: 770 YINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKK- 828
+ N Q V+ SAT NKD+ V +K+M +PVK+ V D + + Q ++ +D++E K
Sbjct: 195 KLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILV-KRDEISLEGIKQYVVNVDKEEWKF 253
Query: 829 DWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDI 888
D L + +D++ + ++F K V +S L S++GD+ QE+R+ + D
Sbjct: 254 DTLCDIYDSLTITQ--CVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDF 311
Query: 889 TSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936
+G++R+ ++TDV +RG+DV ++ VINYD P IE Y+HR+GR+G F
Sbjct: 312 RTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRF 359
>TAIR|locus:2087852 [details] [associations]
symbol:PMH2 "putative mitochondrial RNA helicase 2"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
Uniprot:Q9LUW5
Length = 616
Score = 567 (204.7 bits), Expect = 2.5e-54, P = 2.5e-54
Identities = 136/356 (38%), Positives = 195/356 (54%)
Query: 85 PEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTP 144
PEI++ L + PIQ M G DMIG A+TGTGKT AF +P +
Sbjct: 113 PEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAK 172
Query: 145 ISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILI 204
P LV+APTRELA Q+E+E + L +C+YGG I Q+ ++ G + +
Sbjct: 173 HGRGRNPLCLVLAPTRELARQVEKEFRE-SAPSLDTICLYGGTPIGQQMRQLDYGVDVAV 231
Query: 205 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 264
TPGR+ D + R +++L V FVVLDEAD+ML +GF + + RQ++M SAT
Sbjct: 232 GTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATM 291
Query: 265 NKDVQRVAKKYMVNPVKVN-VGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERD 323
++ + KKY+ NP+ V+ VG D +T II D + + +
Sbjct: 292 PSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVTE-HAKGG 350
Query: 324 KVMVFMGRKASVSAMSSDLACQYRKSC-SLYGDLSQEDREIALEDITSGYARICVATDVA 382
K +VF K +S LA ++ C +L+GD+SQ RE L G+ I VATDVA
Sbjct: 351 KCIVFTQTKRDADRLSYALARSFK--CEALHGDISQSQRERTLAGFRDGHFNILVATDVA 408
Query: 383 SRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEII 438
+RGLDVP++ +I+Y+ P++ E +VHR GRTGRAGK G +I L+ +D S A +II
Sbjct: 409 ARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAI-LIYSQDQSRAVKII 463
Score = 522 (188.8 bits), Expect = 2.1e-49, P = 2.1e-49
Identities = 123/332 (37%), Positives = 179/332 (53%)
Query: 605 PEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTP 664
PEI++ L + PIQ M G DMIG A+TGTGKT AF +P +
Sbjct: 113 PEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAK 172
Query: 665 ISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREGCHILI 724
P LV+APTRELA Q+E+E + L +C+YGG + Q+ ++ G + +
Sbjct: 173 HGRGRNPLCLVLAPTRELARQVEKEFRE-SAPSLDTICLYGGTPIGQQMRQLDYGVDVAV 231
Query: 725 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 784
TPGR+ D + R +++L V FVVLDEAD+ML +GF + + RQ++M SAT
Sbjct: 232 GTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATM 291
Query: 785 NKDVQRVAKKYMVNPVKVN-VGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERD 843
++ + KKY+ NP+ V+ VG D +T II D + + +
Sbjct: 292 PSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVTE-HAKGG 350
Query: 844 KVMVFMGRKASVSAMSSDLACQYRKSC-SLYGDLSQEDREIALEDITSGYARICVATDVA 902
K +VF K +S LA ++ C +L+GD+SQ RE L G+ I VATDVA
Sbjct: 351 KCIVFTQTKRDADRLSYALARSFK--CEALHGDISQSQRERTLAGFRDGHFNILVATDVA 408
Query: 903 SRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
+RGLDVP++ +I+Y+ P++ E +VHR GRTG
Sbjct: 409 ARGLDVPNVDLIIHYELPNNTETFVHRTGRTG 440
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 567 (204.7 bits), Expect = 2.5e-54, P = 2.5e-54
Identities = 142/407 (34%), Positives = 229/407 (56%)
Query: 28 KEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEI 87
++ E N Q E+ ++ + S +T+ ID PD ++ +FK+ P++
Sbjct: 83 QKQQEQENANHNQTESSLSSSSSTTSSSITT---ID--PDAELK--FKTFKE-LNLVPDL 134
Query: 88 LRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHT-HLQTTPIS 146
L +E++ FT P+PIQ++A P + G D+IG+AQTG+GKT AF +P L H Q +
Sbjct: 135 LESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWHAQQPYFA 194
Query: 147 ERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEIEPQLEKIREGCHILIA 205
LV+APTREL QI+ + + GL++ C+ GG ++ Q + H+++A
Sbjct: 195 -------LVLAPTRELTFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPHVIVA 247
Query: 206 TPGRLNDFVSRAS-IDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 264
TPGR+ D + LK + ++V+DEADR+LD+ F P ++K I R T + SAT
Sbjct: 248 TPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRTTYLFSATM 307
Query: 265 NKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDK 324
++++ + + NPV+V V S A + V Q ++++++ K L+ ++E K
Sbjct: 308 TNKIEKLQRASLHNPVRVAVSSKYQTADNLV-QSMMLVNDGYKNTILIHL---LNEFMGK 363
Query: 325 VMVFMGRKASVSAMSSDLACQYR-KSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 383
++ R + + ++ LA + L+G LSQ R +L S A I VATDVA+
Sbjct: 364 SIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILVATDVAA 423
Query: 384 RGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430
RGLD+P + VINYD P+ + Y+HRVGRT RAG+SG+SI+L+T+ D
Sbjct: 424 RGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYD 470
Score = 516 (186.7 bits), Expect = 9.5e-49, P = 9.5e-49
Identities = 132/390 (33%), Positives = 214/390 (54%)
Query: 548 KEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEI 607
++ E N Q E+ ++ + S +T+ ID PD ++ +FK+ P++
Sbjct: 83 QKQQEQENANHNQTESSLSSSSSTTSSSITT---ID--PDAELK--FKTFKE-LNLVPDL 134
Query: 608 LRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHT-HLQTTPIS 666
L +E++ FT P+PIQ++A P + G D+IG+AQTG+GKT AF +P L H Q +
Sbjct: 135 LESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWHAQQPYFA 194
Query: 667 ERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKELEPQLEKIREGCHILIA 725
LV+APTREL QI+ + + GL++ C+ GG ++ Q + H+++A
Sbjct: 195 -------LVLAPTRELTFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPHVIVA 247
Query: 726 TPGRLNDFVSRAS-IDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATW 784
TPGR+ D + LK + ++V+DEADR+LD+ F P ++K I R T + SAT
Sbjct: 248 TPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRTTYLFSATM 307
Query: 785 NKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDK 844
++++ + + NPV+V V S A + V Q ++++++ K L+ ++E K
Sbjct: 308 TNKIEKLQRASLHNPVRVAVSSKYQTADNLV-QSMMLVNDGYKNTILIHL---LNEFMGK 363
Query: 845 VMVFMGRKASVSAMSSDLACQYR-KSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 903
++ R + + ++ LA + L+G LSQ R +L S A I VATDVA+
Sbjct: 364 SIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILVATDVAA 423
Query: 904 RGLDVPDLTHVINYDFPSHIEEYVHRVGRT 933
RGLD+P + VINYD P+ + Y+HRVGRT
Sbjct: 424 RGLDIPSVDVVINYDIPTDSKAYIHRVGRT 453
>UNIPROTKB|E2R4Y9 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:AAEX03005031
Ensembl:ENSCAFT00000017696 Uniprot:E2R4Y9
Length = 623
Score = 566 (204.3 bits), Expect = 3.2e-54, P = 3.2e-54
Identities = 130/370 (35%), Positives = 211/370 (57%)
Query: 81 FQH--YPEILRQ-LENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIH 137
F+H +PE L L+ + P+PIQ Q P+ + G D++ A TG+GKT AFLLP +
Sbjct: 206 FEHCGFPEALNHNLKTSGYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPVI-- 263
Query: 138 THLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGL---KAVCVYGGKEIEPQLE 194
T + E PS L++ PTRELA QIE + ++ GL K V + GG + PQL
Sbjct: 264 ----TRALCESKTPSALILTPTRELAIQIENQAKEL-MSGLPRMKTVLLVGGLPLPPQLY 318
Query: 195 KIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPN 254
++R+ ++IATPGRL D + ++S++L + VV+DEAD ML +GF+ Q+ ++ +
Sbjct: 319 RLRQHVKVIIATPGRLLDIIKQSSVELCGIKIVVVDEADTMLKMGFQQQVLDILEHVPND 378
Query: 255 RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEF 314
QT++ SAT ++++A + + NPV++ G +L + +V Q I+ ++E KK L E
Sbjct: 379 SQTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCS-SVRQIILWVEEPAKKKKLFEI 437
Query: 315 FDNMDEERDKVMVFMGRKASVSAMSSDLA-CQYRKSCSLYGDLSQEDREIALEDITSGYA 373
++ + V+VF+ K +S + KS S++ + SQ +R+ L+ + G
Sbjct: 438 LNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSVSIHSEKSQTERKNILKGLLEGDY 497
Query: 374 RICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD--- 430
+ V+T V RGLD+ + V+N+D PS ++EYVH+VGR GR G++G +IT +
Sbjct: 498 EVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRL 557
Query: 431 -WSHAHEIIP 439
W A + P
Sbjct: 558 FWDIAKRVKP 567
Score = 537 (194.1 bits), Expect = 4.9e-51, P = 4.9e-51
Identities = 123/341 (36%), Positives = 198/341 (58%)
Query: 601 FQH--YPEILRQ-LENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIH 657
F+H +PE L L+ + P+PIQ Q P+ + G D++ A TG+GKT AFLLP +
Sbjct: 206 FEHCGFPEALNHNLKTSGYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPVI-- 263
Query: 658 THLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGL---KAVCVYGGKELEPQLE 714
T + E PS L++ PTRELA QIE + ++ GL K V + GG L PQL
Sbjct: 264 ----TRALCESKTPSALILTPTRELAIQIENQAKEL-MSGLPRMKTVLLVGGLPLPPQLY 318
Query: 715 KIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPN 774
++R+ ++IATPGRL D + ++S++L + VV+DEAD ML +GF+ Q+ ++ +
Sbjct: 319 RLRQHVKVIIATPGRLLDIIKQSSVELCGIKIVVVDEADTMLKMGFQQQVLDILEHVPND 378
Query: 775 RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEF 834
QT++ SAT ++++A + + NPV++ G +L + +V Q I+ ++E KK L E
Sbjct: 379 SQTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCS-SVRQIILWVEEPAKKKKLFEI 437
Query: 835 FDNMDEERDKVMVFMGRKASVSAMSSDLA-CQYRKSCSLYGDLSQEDREIALEDITSGYA 893
++ + V+VF+ K +S + KS S++ + SQ +R+ L+ + G
Sbjct: 438 LNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSVSIHSEKSQTERKNILKGLLEGDY 497
Query: 894 RICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
+ V+T V RGLD+ + V+N+D PS ++EYVH+VGR G
Sbjct: 498 EVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQVGRVG 538
Score = 150 (57.9 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 44/154 (28%), Positives = 73/154 (47%)
Query: 513 RHIDPEPTMEELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDIS 572
+H+ EE + LS + + P VYKE P + N+ +Q+E +++
Sbjct: 135 KHLLQVKEKEERLKLSAPHKANSEPESPLNTLYVYKEHPFILNLQEDQIENLKRQ----- 189
Query: 573 VSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQ-LENLSFTTPSPIQAQAWPILM 631
+ +V GQ + P+ F+ +PE L L+ + P+PIQ Q P+ +
Sbjct: 190 LGIVVQ-GQ-------DVTRPIIDFEHC--GFPEALNHNLKTSGYEVPTPIQMQMIPVGL 239
Query: 632 SGHDMIGIAQTGTGKTFAFLLPALIHTHLQT-TP 664
G D++ A TG+GKT AFLLP + ++ TP
Sbjct: 240 LGRDVLASADTGSGKTAAFLLPVITRALCESKTP 273
Score = 148 (57.2 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 43/145 (29%), Positives = 70/145 (48%)
Query: 2 EELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQ 61
EE + LS + + P VYKE P + N+ +Q+E +++ + +V GQ
Sbjct: 144 EERLKLSAPHKANSEPESPLNTLYVYKEHPFILNLQEDQIENLKRQ-----LGIVVQ-GQ 197
Query: 62 IDENPDFQIPNPVTSFKQAFQHYPEILRQ-LENLSFTTPSPIQAQAWPILMSGHDMIGIA 120
+ P+ F+ +PE L L+ + P+PIQ Q P+ + G D++ A
Sbjct: 198 -------DVTRPIIDFEHC--GFPEALNHNLKTSGYEVPTPIQMQMIPVGLLGRDVLASA 248
Query: 121 QTGTGKTFAFLLPALIHTHLQT-TP 144
TG+GKT AFLLP + ++ TP
Sbjct: 249 DTGSGKTAAFLLPVITRALCESKTP 273
>UNIPROTKB|E2QTT0 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 OMA:GDTEEGC EMBL:AAEX03002786
Ensembl:ENSCAFT00000021867 NextBio:20898308 Uniprot:E2QTT0
Length = 738
Score = 549 (198.3 bits), Expect = 3.6e-54, Sum P(2) = 3.6e-54
Identities = 135/394 (34%), Positives = 211/394 (53%)
Query: 41 VEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQ--AFQHYP---EILRQLENLS 95
++ + KK+ +S + D ++ D ++ +T ++ AF ++P E ++ L+
Sbjct: 102 IDEYEKKSKRVS----SLDSSTHKSSDNKLEETLTREQKEGAFSNFPISEETIKLLKGRG 157
Query: 96 FTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLV 155
+ PIQ + + + G D+I A+TGTGKTF+F +P + I + P VLV
Sbjct: 158 VSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLV 217
Query: 156 MAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVS 215
+APTRELA Q+ ++ I K L C YGG + Q+ IR G IL+ TPGR+ D +
Sbjct: 218 LAPTRELANQVAKDFKDITRK-LSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQ 276
Query: 216 RASIDLKAVSFVVLDEADRMLDLGFEPQIN-------KTSIYINPNRQTVMTSATWNKDV 268
+DL + VVLDE D+MLDLGF Q+ KT NP QT++ SAT + V
Sbjct: 277 SGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNP--QTLLFSATCPQWV 334
Query: 269 QRVAKKYMVNPVK-VN-VGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVM 326
+VAKKYM + + V+ VG + A TV I ++ + + + +
Sbjct: 335 YKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAI 394
Query: 327 VFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGL 386
+F K +V+ M+ + + C L+GD++Q REI L+ G ++ VAT+VA+RGL
Sbjct: 395 IFCETKKNVTEMAMNPHIKQNAQC-LHGDIAQSQREITLKGFREGSFKVLVATNVAARGL 453
Query: 387 DVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSG 420
D+P++ VI P +E Y+HR GRTGRAG++G
Sbjct: 454 DIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTG 487
Score = 525 (189.9 bits), Expect = 2.6e-48, P = 2.6e-48
Identities = 131/388 (33%), Positives = 205/388 (52%)
Query: 561 VEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQ--AFQHYP---EILRQLENLS 615
++ + KK+ +S + D ++ D ++ +T ++ AF ++P E ++ L+
Sbjct: 102 IDEYEKKSKRVS----SLDSSTHKSSDNKLEETLTREQKEGAFSNFPISEETIKLLKGRG 157
Query: 616 FTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLV 675
+ PIQ + + + G D+I A+TGTGKTF+F +P + I + P VLV
Sbjct: 158 VSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLV 217
Query: 676 MAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVS 735
+APTRELA Q+ ++ I K L C YGG + Q+ IR G IL+ TPGR+ D +
Sbjct: 218 LAPTRELANQVAKDFKDITRK-LSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQ 276
Query: 736 RASIDLKAVSFVVLDEADRMLDLGFEPQIN-------KTSIYINPNRQTVMTSATWNKDV 788
+DL + VVLDE D+MLDLGF Q+ KT NP QT++ SAT + V
Sbjct: 277 SGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNP--QTLLFSATCPQWV 334
Query: 789 QRVAKKYMVNPVK-VN-VGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVM 846
+VAKKYM + + V+ VG + A TV I ++ + + + +
Sbjct: 335 YKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAI 394
Query: 847 VFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGL 906
+F K +V+ M+ + + C L+GD++Q REI L+ G ++ VAT+VA+RGL
Sbjct: 395 IFCETKKNVTEMAMNPHIKQNAQC-LHGDIAQSQREITLKGFREGSFKVLVATNVAARGL 453
Query: 907 DVPDLTHVINYDFPSHIEEYVHRVGRTG 934
D+P++ VI P +E Y+HR GRTG
Sbjct: 454 DIPEVDLVIQSSPPQDVESYIHRSGRTG 481
Score = 41 (19.5 bits), Expect = 3.6e-54, Sum P(2) = 3.6e-54
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 411 GRTGRAGKSG 420
GR GR+G+SG
Sbjct: 686 GRAGRSGRSG 695
Score = 38 (18.4 bits), Expect = 7.5e-54, Sum P(2) = 7.5e-54
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 413 TGRAGKSGES 422
+GRAG+SG S
Sbjct: 685 SGRAGRSGRS 694
Score = 38 (18.4 bits), Expect = 7.5e-54, Sum P(2) = 7.5e-54
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 409 RVGRTGRAG-KSG 420
R GR+GR+G +SG
Sbjct: 687 RAGRSGRSGGRSG 699
>UNIPROTKB|A0R8U6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
"RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
ProteinModelPortal:A0R8U6 STRING:A0R8U6
EnsemblBacteria:EBBACT00000069056 GeneID:4546566
GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
Length = 528
Score = 564 (203.6 bits), Expect = 5.3e-54, P = 5.3e-54
Identities = 129/347 (37%), Positives = 202/347 (58%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPAL--IHTHLQTTP 144
+L+ +E++ F +PIQA+ P + G D+IG AQTGTGKT AF LP L + TH ++
Sbjct: 13 LLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ 72
Query: 145 ISERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHIL 203
G +V+APTRELA Q+ E+ KI +K ++ + +YGG++I Q+ +++ HI+
Sbjct: 73 -----G---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHII 124
Query: 204 IATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSAT 263
+ TPGR+ D ++R ++ L+ V VVLDEAD ML++GF I + QT++ SAT
Sbjct: 125 VGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSAT 184
Query: 264 WNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERD 323
++R+A+++M P + V + ++ + + Q + + E +K D L D E
Sbjct: 185 MPDPIRRIAERFMTEPQHIKVKAKEVTMPN-IQQFYLEVQEKKKFDVLTRLLDIQSPEL- 242
Query: 324 KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 383
+VF K V +S L + + ++GDL+Q R L G + VATDVA+
Sbjct: 243 -AIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAA 301
Query: 384 RGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430
RGLD+ +THV N+D P E YVHR+GRTGRAGK G ++ +T ++
Sbjct: 302 RGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE 348
Score = 530 (191.6 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 122/331 (36%), Positives = 191/331 (57%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPAL--IHTHLQTTP 664
+L+ +E++ F +PIQA+ P + G D+IG AQTGTGKT AF LP L + TH ++
Sbjct: 13 LLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ 72
Query: 665 ISERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHIL 723
G +V+APTRELA Q+ E+ KI +K ++ + +YGG+++ Q+ +++ HI+
Sbjct: 73 -----G---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHII 124
Query: 724 IATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSAT 783
+ TPGR+ D ++R ++ L+ V VVLDEAD ML++GF I + QT++ SAT
Sbjct: 125 VGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSAT 184
Query: 784 WNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERD 843
++R+A+++M P + V + ++ + + Q + + E +K D L D E
Sbjct: 185 MPDPIRRIAERFMTEPQHIKVKAKEVTMPN-IQQFYLEVQEKKKFDVLTRLLDIQSPEL- 242
Query: 844 KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 903
+VF K V +S L + + ++GDL+Q R L G + VATDVA+
Sbjct: 243 -AIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAA 301
Query: 904 RGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
RGLD+ +THV N+D P E YVHR+GRTG
Sbjct: 302 RGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
>UNIPROTKB|Q63GX5 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
"bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
ProteinModelPortal:Q63GX5 STRING:Q63GX5
EnsemblBacteria:EBBACT00000041470 GeneID:3022962
GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
Length = 528
Score = 564 (203.6 bits), Expect = 5.3e-54, P = 5.3e-54
Identities = 129/347 (37%), Positives = 202/347 (58%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPAL--IHTHLQTTP 144
+L+ +E++ F +PIQA+ P + G D+IG AQTGTGKT AF LP L + TH ++
Sbjct: 13 LLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ 72
Query: 145 ISERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHIL 203
G +V+APTRELA Q+ E+ KI +K ++ + +YGG++I Q+ +++ HI+
Sbjct: 73 -----G---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHII 124
Query: 204 IATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSAT 263
+ TPGR+ D ++R ++ L+ V VVLDEAD ML++GF I + QT++ SAT
Sbjct: 125 VGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSAT 184
Query: 264 WNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERD 323
++R+A+++M P + V + ++ + + Q + + E +K D L D E
Sbjct: 185 MPDPIRRIAERFMTEPQHIKVKAKEVTMPN-IQQFYLEVQEKKKFDVLTRLLDIQSPEL- 242
Query: 324 KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 383
+VF K V +S L + + ++GDL+Q R L G + VATDVA+
Sbjct: 243 -AIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAA 301
Query: 384 RGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430
RGLD+ +THV N+D P E YVHR+GRTGRAGK G ++ +T ++
Sbjct: 302 RGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE 348
Score = 530 (191.6 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 122/331 (36%), Positives = 191/331 (57%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPAL--IHTHLQTTP 664
+L+ +E++ F +PIQA+ P + G D+IG AQTGTGKT AF LP L + TH ++
Sbjct: 13 LLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ 72
Query: 665 ISERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHIL 723
G +V+APTRELA Q+ E+ KI +K ++ + +YGG+++ Q+ +++ HI+
Sbjct: 73 -----G---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHII 124
Query: 724 IATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSAT 783
+ TPGR+ D ++R ++ L+ V VVLDEAD ML++GF I + QT++ SAT
Sbjct: 125 VGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSAT 184
Query: 784 WNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERD 843
++R+A+++M P + V + ++ + + Q + + E +K D L D E
Sbjct: 185 MPDPIRRIAERFMTEPQHIKVKAKEVTMPN-IQQFYLEVQEKKKFDVLTRLLDIQSPEL- 242
Query: 844 KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 903
+VF K V +S L + + ++GDL+Q R L G + VATDVA+
Sbjct: 243 -AIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAA 301
Query: 904 RGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
RGLD+ +THV N+D P E YVHR+GRTG
Sbjct: 302 RGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
>UNIPROTKB|Q6HPE6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:281309 "Bacillus thuringiensis serovar konkukian str.
97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
Length = 528
Score = 564 (203.6 bits), Expect = 5.3e-54, P = 5.3e-54
Identities = 129/347 (37%), Positives = 202/347 (58%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPAL--IHTHLQTTP 144
+L+ +E++ F +PIQA+ P + G D+IG AQTGTGKT AF LP L + TH ++
Sbjct: 13 LLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ 72
Query: 145 ISERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHIL 203
G +V+APTRELA Q+ E+ KI +K ++ + +YGG++I Q+ +++ HI+
Sbjct: 73 -----G---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHII 124
Query: 204 IATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSAT 263
+ TPGR+ D ++R ++ L+ V VVLDEAD ML++GF I + QT++ SAT
Sbjct: 125 VGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSAT 184
Query: 264 WNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERD 323
++R+A+++M P + V + ++ + + Q + + E +K D L D E
Sbjct: 185 MPDPIRRIAERFMTEPQHIKVKAKEVTMPN-IQQFYLEVQEKKKFDVLTRLLDIQSPEL- 242
Query: 324 KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 383
+VF K V +S L + + ++GDL+Q R L G + VATDVA+
Sbjct: 243 -AIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAA 301
Query: 384 RGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430
RGLD+ +THV N+D P E YVHR+GRTGRAGK G ++ +T ++
Sbjct: 302 RGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE 348
Score = 530 (191.6 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 122/331 (36%), Positives = 191/331 (57%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPAL--IHTHLQTTP 664
+L+ +E++ F +PIQA+ P + G D+IG AQTGTGKT AF LP L + TH ++
Sbjct: 13 LLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ 72
Query: 665 ISERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHIL 723
G +V+APTRELA Q+ E+ KI +K ++ + +YGG+++ Q+ +++ HI+
Sbjct: 73 -----G---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHII 124
Query: 724 IATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSAT 783
+ TPGR+ D ++R ++ L+ V VVLDEAD ML++GF I + QT++ SAT
Sbjct: 125 VGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSAT 184
Query: 784 WNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERD 843
++R+A+++M P + V + ++ + + Q + + E +K D L D E
Sbjct: 185 MPDPIRRIAERFMTEPQHIKVKAKEVTMPN-IQQFYLEVQEKKKFDVLTRLLDIQSPEL- 242
Query: 844 KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 903
+VF K V +S L + + ++GDL+Q R L G + VATDVA+
Sbjct: 243 -AIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAA 301
Query: 904 RGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
RGLD+ +THV N+D P E YVHR+GRTG
Sbjct: 302 RGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
>UNIPROTKB|Q73EU1 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
Uniprot:Q73EU1
Length = 525
Score = 564 (203.6 bits), Expect = 5.3e-54, P = 5.3e-54
Identities = 129/347 (37%), Positives = 202/347 (58%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPAL--IHTHLQTTP 144
+L+ +E++ F +PIQA+ P + G D+IG AQTGTGKT AF LP L + TH ++
Sbjct: 13 LLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ 72
Query: 145 ISERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHIL 203
G +V+APTRELA Q+ E+ KI +K ++ + +YGG++I Q+ +++ HI+
Sbjct: 73 -----G---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHII 124
Query: 204 IATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSAT 263
+ TPGR+ D ++R ++ L+ V VVLDEAD ML++GF I + QT++ SAT
Sbjct: 125 VGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSAT 184
Query: 264 WNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERD 323
++R+A+++M P + V + ++ + + Q + + E +K D L D E
Sbjct: 185 MPDPIRRIAERFMTEPQHIKVKAKEVTMPN-IQQFYLEVQEKKKFDVLTRLLDIQSPEL- 242
Query: 324 KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 383
+VF K V +S L + + ++GDL+Q R L G + VATDVA+
Sbjct: 243 -AIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAA 301
Query: 384 RGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430
RGLD+ +THV N+D P E YVHR+GRTGRAGK G ++ +T ++
Sbjct: 302 RGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE 348
Score = 530 (191.6 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 122/331 (36%), Positives = 191/331 (57%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPAL--IHTHLQTTP 664
+L+ +E++ F +PIQA+ P + G D+IG AQTGTGKT AF LP L + TH ++
Sbjct: 13 LLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ 72
Query: 665 ISERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHIL 723
G +V+APTRELA Q+ E+ KI +K ++ + +YGG+++ Q+ +++ HI+
Sbjct: 73 -----G---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHII 124
Query: 724 IATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSAT 783
+ TPGR+ D ++R ++ L+ V VVLDEAD ML++GF I + QT++ SAT
Sbjct: 125 VGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSAT 184
Query: 784 WNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERD 843
++R+A+++M P + V + ++ + + Q + + E +K D L D E
Sbjct: 185 MPDPIRRIAERFMTEPQHIKVKAKEVTMPN-IQQFYLEVQEKKKFDVLTRLLDIQSPEL- 242
Query: 844 KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 903
+VF K V +S L + + ++GDL+Q R L G + VATDVA+
Sbjct: 243 -AIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAA 301
Query: 904 RGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
RGLD+ +THV N+D P E YVHR+GRTG
Sbjct: 302 RGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
>UNIPROTKB|Q81IT9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
Length = 533
Score = 564 (203.6 bits), Expect = 5.3e-54, P = 5.3e-54
Identities = 129/347 (37%), Positives = 202/347 (58%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPAL--IHTHLQTTP 144
+L+ +E++ F +PIQA+ P + G D+IG AQTGTGKT AF LP L + TH ++
Sbjct: 13 LLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ 72
Query: 145 ISERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHIL 203
G +V+APTRELA Q+ E+ KI +K ++ + +YGG++I Q+ +++ HI+
Sbjct: 73 -----G---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHII 124
Query: 204 IATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSAT 263
+ TPGR+ D ++R ++ L+ V VVLDEAD ML++GF I + QT++ SAT
Sbjct: 125 VGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSAT 184
Query: 264 WNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERD 323
++R+A+++M P + V + ++ + + Q + + E +K D L D E
Sbjct: 185 MPDPIRRIAERFMTEPQHIKVKAKEVTMPN-IQQFYLEVQEKKKFDVLTRLLDIQSPEL- 242
Query: 324 KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 383
+VF K V +S L + + ++GDL+Q R L G + VATDVA+
Sbjct: 243 -AIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAA 301
Query: 384 RGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430
RGLD+ +THV N+D P E YVHR+GRTGRAGK G ++ +T ++
Sbjct: 302 RGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE 348
Score = 530 (191.6 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 122/331 (36%), Positives = 191/331 (57%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPAL--IHTHLQTTP 664
+L+ +E++ F +PIQA+ P + G D+IG AQTGTGKT AF LP L + TH ++
Sbjct: 13 LLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ 72
Query: 665 ISERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHIL 723
G +V+APTRELA Q+ E+ KI +K ++ + +YGG+++ Q+ +++ HI+
Sbjct: 73 -----G---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHII 124
Query: 724 IATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSAT 783
+ TPGR+ D ++R ++ L+ V VVLDEAD ML++GF I + QT++ SAT
Sbjct: 125 VGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSAT 184
Query: 784 WNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERD 843
++R+A+++M P + V + ++ + + Q + + E +K D L D E
Sbjct: 185 MPDPIRRIAERFMTEPQHIKVKAKEVTMPN-IQQFYLEVQEKKKFDVLTRLLDIQSPEL- 242
Query: 844 KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 903
+VF K V +S L + + ++GDL+Q R L G + VATDVA+
Sbjct: 243 -AIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAA 301
Query: 904 RGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
RGLD+ +THV N+D P E YVHR+GRTG
Sbjct: 302 RGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
>UNIPROTKB|Q81VG0 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 564 (203.6 bits), Expect = 5.3e-54, P = 5.3e-54
Identities = 129/347 (37%), Positives = 202/347 (58%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPAL--IHTHLQTTP 144
+L+ +E++ F +PIQA+ P + G D+IG AQTGTGKT AF LP L + TH ++
Sbjct: 13 LLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ 72
Query: 145 ISERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHIL 203
G +V+APTRELA Q+ E+ KI +K ++ + +YGG++I Q+ +++ HI+
Sbjct: 73 -----G---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHII 124
Query: 204 IATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSAT 263
+ TPGR+ D ++R ++ L+ V VVLDEAD ML++GF I + QT++ SAT
Sbjct: 125 VGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSAT 184
Query: 264 WNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERD 323
++R+A+++M P + V + ++ + + Q + + E +K D L D E
Sbjct: 185 MPDPIRRIAERFMTEPQHIKVKAKEVTMPN-IQQFYLEVQEKKKFDVLTRLLDIQSPEL- 242
Query: 324 KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 383
+VF K V +S L + + ++GDL+Q R L G + VATDVA+
Sbjct: 243 -AIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAA 301
Query: 384 RGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430
RGLD+ +THV N+D P E YVHR+GRTGRAGK G ++ +T ++
Sbjct: 302 RGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE 348
Score = 530 (191.6 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 122/331 (36%), Positives = 191/331 (57%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPAL--IHTHLQTTP 664
+L+ +E++ F +PIQA+ P + G D+IG AQTGTGKT AF LP L + TH ++
Sbjct: 13 LLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ 72
Query: 665 ISERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHIL 723
G +V+APTRELA Q+ E+ KI +K ++ + +YGG+++ Q+ +++ HI+
Sbjct: 73 -----G---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHII 124
Query: 724 IATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSAT 783
+ TPGR+ D ++R ++ L+ V VVLDEAD ML++GF I + QT++ SAT
Sbjct: 125 VGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSAT 184
Query: 784 WNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERD 843
++R+A+++M P + V + ++ + + Q + + E +K D L D E
Sbjct: 185 MPDPIRRIAERFMTEPQHIKVKAKEVTMPN-IQQFYLEVQEKKKFDVLTRLLDIQSPEL- 242
Query: 844 KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 903
+VF K V +S L + + ++GDL+Q R L G + VATDVA+
Sbjct: 243 -AIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAA 301
Query: 904 RGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
RGLD+ +THV N+D P E YVHR+GRTG
Sbjct: 302 RGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
>TIGR_CMR|BA_0247 [details] [associations]
symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 564 (203.6 bits), Expect = 5.3e-54, P = 5.3e-54
Identities = 129/347 (37%), Positives = 202/347 (58%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPAL--IHTHLQTTP 144
+L+ +E++ F +PIQA+ P + G D+IG AQTGTGKT AF LP L + TH ++
Sbjct: 13 LLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ 72
Query: 145 ISERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHIL 203
G +V+APTRELA Q+ E+ KI +K ++ + +YGG++I Q+ +++ HI+
Sbjct: 73 -----G---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHII 124
Query: 204 IATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSAT 263
+ TPGR+ D ++R ++ L+ V VVLDEAD ML++GF I + QT++ SAT
Sbjct: 125 VGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSAT 184
Query: 264 WNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERD 323
++R+A+++M P + V + ++ + + Q + + E +K D L D E
Sbjct: 185 MPDPIRRIAERFMTEPQHIKVKAKEVTMPN-IQQFYLEVQEKKKFDVLTRLLDIQSPEL- 242
Query: 324 KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 383
+VF K V +S L + + ++GDL+Q R L G + VATDVA+
Sbjct: 243 -AIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAA 301
Query: 384 RGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430
RGLD+ +THV N+D P E YVHR+GRTGRAGK G ++ +T ++
Sbjct: 302 RGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE 348
Score = 530 (191.6 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 122/331 (36%), Positives = 191/331 (57%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPAL--IHTHLQTTP 664
+L+ +E++ F +PIQA+ P + G D+IG AQTGTGKT AF LP L + TH ++
Sbjct: 13 LLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ 72
Query: 665 ISERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHIL 723
G +V+APTRELA Q+ E+ KI +K ++ + +YGG+++ Q+ +++ HI+
Sbjct: 73 -----G---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHII 124
Query: 724 IATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSAT 783
+ TPGR+ D ++R ++ L+ V VVLDEAD ML++GF I + QT++ SAT
Sbjct: 125 VGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSAT 184
Query: 784 WNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERD 843
++R+A+++M P + V + ++ + + Q + + E +K D L D E
Sbjct: 185 MPDPIRRIAERFMTEPQHIKVKAKEVTMPN-IQQFYLEVQEKKKFDVLTRLLDIQSPEL- 242
Query: 844 KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVAS 903
+VF K V +S L + + ++GDL+Q R L G + VATDVA+
Sbjct: 243 -AIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAA 301
Query: 904 RGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
RGLD+ +THV N+D P E YVHR+GRTG
Sbjct: 302 RGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
>UNIPROTKB|P0A8J8 [details] [associations]
symbol:rhlB "RhlB" species:83333 "Escherichia coli K-12"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006401 "RNA
catabolic process" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0006401 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:M87049 GO:GO:0004004 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:M83316 EMBL:X56310
PIR:G65181 RefSeq:NP_418227.1 RefSeq:YP_491659.1
ProteinModelPortal:P0A8J8 SMR:P0A8J8 DIP:DIP-35644N IntAct:P0A8J8
PaxDb:P0A8J8 PRIDE:P0A8J8 EnsemblBacteria:EBESCT00000001927
EnsemblBacteria:EBESCT00000015978 GeneID:12934326 GeneID:948290
KEGG:ecj:Y75_p3395 KEGG:eco:b3780 PATRIC:32123051 EchoBASE:EB0837
EcoGene:EG10844 HOGENOM:HOG000268807 KO:K03732 OMA:HIDGIKY
ProtClustDB:PRK04837 BioCyc:EcoCyc:EG10844-MONOMER
BioCyc:ECOL316407:JW3753-MONOMER Genevestigator:P0A8J8
Uniprot:P0A8J8
Length = 421
Score = 564 (203.6 bits), Expect = 5.3e-54, P = 5.3e-54
Identities = 138/350 (39%), Positives = 193/350 (55%)
Query: 81 FQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHL 140
F +P+++ LE F +PIQA A P+ ++G D+ G AQTGTGKT AFL + H L
Sbjct: 14 FALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLT-STFHYLL 72
Query: 141 QTTPISERA--GPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKEIEPQLEKIR 197
I++R P L+MAPTRELA QI + + + GLK YGG + QL+ +
Sbjct: 73 SHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLE 132
Query: 198 EGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQ- 256
G ILI T GRL D+ + I+L A+ VVLDEADRM DLGF I + P Q
Sbjct: 133 SGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQR 192
Query: 257 -TVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFF 315
++ SAT + V+ +A + M N + V + H + +++ +EK L
Sbjct: 193 LNMLFSATLSYRVRELAFEQMNNAEYIEVEP-EQKTGHRIKEELFYPSNEEKMRLLQTLI 251
Query: 316 DNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARI 375
+ +E D+ ++F K + LA + L GD++Q+ R L++ T G I
Sbjct: 252 E--EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDI 309
Query: 376 CVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITL 425
VATDVA+RGL +P +THV NYD P E+YVHR+GRTGRAG SG SI+L
Sbjct: 310 LVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISL 359
Score = 527 (190.6 bits), Expect = 6.0e-50, P = 6.0e-50
Identities = 130/339 (38%), Positives = 184/339 (54%)
Query: 601 FQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHL 660
F +P+++ LE F +PIQA A P+ ++G D+ G AQTGTGKT AFL + H L
Sbjct: 14 FALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLT-STFHYLL 72
Query: 661 QTTPISERA--GPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKELEPQLEKIR 717
I++R P L+MAPTRELA QI + + + GLK YGG + QL+ +
Sbjct: 73 SHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLE 132
Query: 718 EGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQ- 776
G ILI T GRL D+ + I+L A+ VVLDEADRM DLGF I + P Q
Sbjct: 133 SGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQR 192
Query: 777 -TVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFF 835
++ SAT + V+ +A + M N + V + H + +++ +EK L
Sbjct: 193 LNMLFSATLSYRVRELAFEQMNNAEYIEVEP-EQKTGHRIKEELFYPSNEEKMRLLQTLI 251
Query: 836 DNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARI 895
+ +E D+ ++F K + LA + L GD++Q+ R L++ T G I
Sbjct: 252 E--EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDI 309
Query: 896 CVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
VATDVA+RGL +P +THV NYD P E+YVHR+GRTG
Sbjct: 310 LVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTG 348
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 564 (203.6 bits), Expect = 5.3e-54, P = 5.3e-54
Identities = 128/362 (35%), Positives = 210/362 (58%)
Query: 86 EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI 145
+++ L L + P+PIQ +A P +++ D++ AQTGTGKT AF LP L L
Sbjct: 11 QLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPIL--QLLMADNQ 68
Query: 146 SERAGPSV--LVMAPTRELATQIEREVNKIDYKG--LKAVCVYGGKEIEPQLEKIREGCH 201
S+ A ++ LV+ PTRELA Q+++ K KG ++ YGG IE Q G
Sbjct: 69 SDHAAKAIRALVLVPTRELALQVQQSFVKYA-KGTDIRVGIAYGGVSIEAQQAVFNAGID 127
Query: 202 ILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTS 261
+LIATPGRL D + + +++L ++ +V DEADRMLD+GF +I + RQT++ S
Sbjct: 128 VLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQRQTLLFS 187
Query: 262 ATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEE 321
AT + + +K + +P ++ V + A + Q++ +D D K +++ + + +
Sbjct: 188 ATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQ-IEQRVYAIDSDRKTEFVSHLVRSKNWQ 246
Query: 322 RDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDV 381
+ V++F K V +++ L + S +GDLSQ RE L++ G ++ VATDV
Sbjct: 247 Q--VLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVLVATDV 304
Query: 382 ASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPIL 441
A+RGLD+ +L +VIN++ P E+Y+HR+GRTGRAG +G +ITL +++D E+ +L
Sbjct: 305 AARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEVETLL 364
Query: 442 EE 443
++
Sbjct: 365 DK 366
Score = 516 (186.7 bits), Expect = 9.5e-49, P = 9.5e-49
Identities = 117/333 (35%), Positives = 191/333 (57%)
Query: 606 EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI 665
+++ L L + P+PIQ +A P +++ D++ AQTGTGKT AF LP L L
Sbjct: 11 QLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPIL--QLLMADNQ 68
Query: 666 SERAGPSV--LVMAPTRELATQIEREVNKIDYKG--LKAVCVYGGKELEPQLEKIREGCH 721
S+ A ++ LV+ PTRELA Q+++ K KG ++ YGG +E Q G
Sbjct: 69 SDHAAKAIRALVLVPTRELALQVQQSFVKYA-KGTDIRVGIAYGGVSIEAQQAVFNAGID 127
Query: 722 ILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTS 781
+LIATPGRL D + + +++L ++ +V DEADRMLD+GF +I + RQT++ S
Sbjct: 128 VLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQRQTLLFS 187
Query: 782 ATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEE 841
AT + + +K + +P ++ V + A + Q++ +D D K +++ + + +
Sbjct: 188 ATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQ-IEQRVYAIDSDRKTEFVSHLVRSKNWQ 246
Query: 842 RDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDV 901
+ V++F K V +++ L + S +GDLSQ RE L++ G ++ VATDV
Sbjct: 247 Q--VLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVLVATDV 304
Query: 902 ASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
A+RGLD+ +L +VIN++ P E+Y+HR+GRTG
Sbjct: 305 AARGLDIAELQYVINFELPFIAEDYIHRIGRTG 337
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 564 (203.6 bits), Expect = 5.3e-54, P = 5.3e-54
Identities = 128/362 (35%), Positives = 210/362 (58%)
Query: 86 EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI 145
+++ L L + P+PIQ +A P +++ D++ AQTGTGKT AF LP L L
Sbjct: 11 QLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPIL--QLLMADNQ 68
Query: 146 SERAGPSV--LVMAPTRELATQIEREVNKIDYKG--LKAVCVYGGKEIEPQLEKIREGCH 201
S+ A ++ LV+ PTRELA Q+++ K KG ++ YGG IE Q G
Sbjct: 69 SDHAAKAIRALVLVPTRELALQVQQSFVKYA-KGTDIRVGIAYGGVSIEAQQAVFNAGID 127
Query: 202 ILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTS 261
+LIATPGRL D + + +++L ++ +V DEADRMLD+GF +I + RQT++ S
Sbjct: 128 VLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQRQTLLFS 187
Query: 262 ATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEE 321
AT + + +K + +P ++ V + A + Q++ +D D K +++ + + +
Sbjct: 188 ATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQ-IEQRVYAIDSDRKTEFVSHLVRSKNWQ 246
Query: 322 RDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDV 381
+ V++F K V +++ L + S +GDLSQ RE L++ G ++ VATDV
Sbjct: 247 Q--VLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVLVATDV 304
Query: 382 ASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPIL 441
A+RGLD+ +L +VIN++ P E+Y+HR+GRTGRAG +G +ITL +++D E+ +L
Sbjct: 305 AARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEVETLL 364
Query: 442 EE 443
++
Sbjct: 365 DK 366
Score = 516 (186.7 bits), Expect = 9.5e-49, P = 9.5e-49
Identities = 117/333 (35%), Positives = 191/333 (57%)
Query: 606 EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI 665
+++ L L + P+PIQ +A P +++ D++ AQTGTGKT AF LP L L
Sbjct: 11 QLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPIL--QLLMADNQ 68
Query: 666 SERAGPSV--LVMAPTRELATQIEREVNKIDYKG--LKAVCVYGGKELEPQLEKIREGCH 721
S+ A ++ LV+ PTRELA Q+++ K KG ++ YGG +E Q G
Sbjct: 69 SDHAAKAIRALVLVPTRELALQVQQSFVKYA-KGTDIRVGIAYGGVSIEAQQAVFNAGID 127
Query: 722 ILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTS 781
+LIATPGRL D + + +++L ++ +V DEADRMLD+GF +I + RQT++ S
Sbjct: 128 VLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQRQTLLFS 187
Query: 782 ATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEE 841
AT + + +K + +P ++ V + A + Q++ +D D K +++ + + +
Sbjct: 188 ATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQ-IEQRVYAIDSDRKTEFVSHLVRSKNWQ 246
Query: 842 RDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDV 901
+ V++F K V +++ L + S +GDLSQ RE L++ G ++ VATDV
Sbjct: 247 Q--VLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVLVATDV 304
Query: 902 ASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
A+RGLD+ +L +VIN++ P E+Y+HR+GRTG
Sbjct: 305 AARGLDIAELQYVINFELPFIAEDYIHRIGRTG 337
>MGI|MGI:1915247 [details] [associations]
symbol:Ddx59 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 59"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915247
GO:GO:0005524 GO:GO:0046872 GO:GO:0003723 GO:GO:0005622
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
GeneTree:ENSGT00610000086076 CTD:83479 HOGENOM:HOG000006599
HOVERGEN:HBG106120 OMA:VTRPIID EMBL:AK004833 EMBL:AK013179
EMBL:AK076462 EMBL:BC023840 IPI:IPI00119928 IPI:IPI00226119
RefSeq:NP_080776.1 UniGene:Mm.385462 UniGene:Mm.486546
ProteinModelPortal:Q9DBN9 SMR:Q9DBN9 PhosphoSite:Q9DBN9
PRIDE:Q9DBN9 Ensembl:ENSMUST00000027655 GeneID:67997 KEGG:mmu:67997
UCSC:uc007cut.1 UCSC:uc007cuu.2 InParanoid:Q9DBN9 OrthoDB:EOG4K9BBZ
ChiTaRS:DDX59 NextBio:326168 Bgee:Q9DBN9 CleanEx:MM_DDX59
Genevestigator:Q9DBN9 Uniprot:Q9DBN9
Length = 619
Score = 562 (202.9 bits), Expect = 8.8e-54, P = 8.8e-54
Identities = 130/370 (35%), Positives = 208/370 (56%)
Query: 81 FQH--YPEILRQ-LENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIH 137
F+H +PE L Q L+ + P+PIQ Q P+ + G D++ A TG+GKT AFLLP +I
Sbjct: 205 FEHCGFPETLNQNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIIR 264
Query: 138 THLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGL---KAVCVYGGKEIEPQLE 194
SE PS L++ PTRELA QIER+ ++ GL K V + GG + PQL
Sbjct: 265 A------FSEDKTPSALILTPTRELAIQIERQAKEL-MSGLPRMKTVLLVGGLPLPPQLY 317
Query: 195 KIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPN 254
++R+ ++IATPGRL D + ++S+ L + VV+DEAD ML +GF+ Q+ + +
Sbjct: 318 RLRQHVKVIIATPGRLLDIIKQSSVSLSGIKIVVVDEADTMLKMGFQQQVLDVLEHTPGD 377
Query: 255 RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEF 314
QT++ SAT ++++ + + NPV++ G +L +V Q I+ +++ KK L E
Sbjct: 378 CQTILVSATIPDSIEQLTDQLLHNPVRIITGDKNLPCA-SVRQIILWVEDPAKKKKLFEI 436
Query: 315 FDNMDEERDKVMVFMGRKASVSAMSSDLA-CQYRKSCSLYGDLSQEDREIALEDITSGYA 373
++ + V+VF+ K +S + S S++ + SQ +R L+ + G
Sbjct: 437 LNDQKLFKPPVLVFVDCKLGADLLSEAVQKITGLNSTSIHSEKSQVERRDILKGLLEGDY 496
Query: 374 RICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD--- 430
+ V+T V RGLD+ ++ V+N+D PS ++EYVH+VGR GR G++G +IT +
Sbjct: 497 EVVVSTGVLGRGLDLVNVKLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRL 556
Query: 431 -WSHAHEIIP 439
W A + P
Sbjct: 557 FWDVAKRVKP 566
Score = 533 (192.7 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 123/341 (36%), Positives = 195/341 (57%)
Query: 601 FQH--YPEILRQ-LENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIH 657
F+H +PE L Q L+ + P+PIQ Q P+ + G D++ A TG+GKT AFLLP +I
Sbjct: 205 FEHCGFPETLNQNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIIR 264
Query: 658 THLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGL---KAVCVYGGKELEPQLE 714
SE PS L++ PTRELA QIER+ ++ GL K V + GG L PQL
Sbjct: 265 A------FSEDKTPSALILTPTRELAIQIERQAKEL-MSGLPRMKTVLLVGGLPLPPQLY 317
Query: 715 KIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPN 774
++R+ ++IATPGRL D + ++S+ L + VV+DEAD ML +GF+ Q+ + +
Sbjct: 318 RLRQHVKVIIATPGRLLDIIKQSSVSLSGIKIVVVDEADTMLKMGFQQQVLDVLEHTPGD 377
Query: 775 RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEF 834
QT++ SAT ++++ + + NPV++ G +L +V Q I+ +++ KK L E
Sbjct: 378 CQTILVSATIPDSIEQLTDQLLHNPVRIITGDKNLPCA-SVRQIILWVEDPAKKKKLFEI 436
Query: 835 FDNMDEERDKVMVFMGRKASVSAMSSDLA-CQYRKSCSLYGDLSQEDREIALEDITSGYA 893
++ + V+VF+ K +S + S S++ + SQ +R L+ + G
Sbjct: 437 LNDQKLFKPPVLVFVDCKLGADLLSEAVQKITGLNSTSIHSEKSQVERRDILKGLLEGDY 496
Query: 894 RICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
+ V+T V RGLD+ ++ V+N+D PS ++EYVH+VGR G
Sbjct: 497 EVVVSTGVLGRGLDLVNVKLVVNFDMPSSMDEYVHQVGRVG 537
Score = 152 (58.6 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 40/121 (33%), Positives = 63/121 (52%)
Query: 26 VYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYP 85
VYKE P + + +Q+E +++ + +SV GQ + P+ F+ +P
Sbjct: 167 VYKEHPFIVTLKEDQIETLKQQ---LGISV---QGQ-------DVARPIIDFEHC--GFP 211
Query: 86 EILRQ-LENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQT-T 143
E L Q L+ + P+PIQ Q P+ + G D++ A TG+GKT AFLLP +I + T
Sbjct: 212 ETLNQNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIIRAFSEDKT 271
Query: 144 P 144
P
Sbjct: 272 P 272
Score = 152 (58.6 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 40/121 (33%), Positives = 63/121 (52%)
Query: 546 VYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYP 605
VYKE P + + +Q+E +++ + +SV GQ + P+ F+ +P
Sbjct: 167 VYKEHPFIVTLKEDQIETLKQQ---LGISV---QGQ-------DVARPIIDFEHC--GFP 211
Query: 606 EILRQ-LENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQT-T 663
E L Q L+ + P+PIQ Q P+ + G D++ A TG+GKT AFLLP +I + T
Sbjct: 212 ETLNQNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIIRAFSEDKT 271
Query: 664 P 664
P
Sbjct: 272 P 272
>UNIPROTKB|F1MMK3 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 CTD:79009 KO:K13183
OMA:GDTEEGC EMBL:DAAA02061828 IPI:IPI00689334 RefSeq:NP_001192982.1
UniGene:Bt.55841 PRIDE:F1MMK3 Ensembl:ENSBTAT00000022002
GeneID:534331 KEGG:bta:534331 NextBio:20876363 ArrayExpress:F1MMK3
Uniprot:F1MMK3
Length = 737
Score = 546 (197.3 bits), Expect = 1.0e-53, Sum P(2) = 1.0e-53
Identities = 136/404 (33%), Positives = 216/404 (53%)
Query: 31 PEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQ--AFQHYP--- 85
P +++ ++ K++ +S S+ +S + +N ++ +T ++ AF ++P
Sbjct: 91 PRRKDLSNGDIDEHEKRSKRVS-SLNSSTHKSSDN---KVEETLTREQKEGAFSNFPISE 146
Query: 86 EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI 145
E ++ L+ T PIQ + + + G D+I A+TGTGKTF+F +P + I
Sbjct: 147 ETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETI 206
Query: 146 SERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIA 205
+ P VLV+APTRELA Q+ ++ + K L C YGG + Q+ IR G IL+
Sbjct: 207 KKSRSPKVLVLAPTRELANQVAKDFKDVTRK-LSVACFYGGTSYQSQINHIRNGIDILVG 265
Query: 206 TPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQIN-------KTSIYINPNRQTV 258
TPGR+ D + +DL + VVLDE D+MLDLGF Q+ KT NP QT+
Sbjct: 266 TPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDILHESYKTDSEDNP--QTL 323
Query: 259 MTSATWNKDVQRVAKKYMVNPVK-VN-VGSLDLAATHTVTQKIIILDEDEKKDWLMEFFD 316
+ SAT + V +VAKKYM + + V+ VG + A TV I ++ + +
Sbjct: 324 LFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQ 383
Query: 317 NMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARIC 376
+ ++F K +V+ M+ + + C L+GD++Q REI L+ G ++
Sbjct: 384 VYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQC-LHGDIAQSQREITLKGFREGSFKVL 442
Query: 377 VATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSG 420
VAT+VA+RGLD+P++ VI P +E Y+HR GRTGRAG++G
Sbjct: 443 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTG 486
Score = 522 (188.8 bits), Expect = 6.1e-48, P = 6.1e-48
Identities = 132/398 (33%), Positives = 210/398 (52%)
Query: 551 PEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQ--AFQHYP--- 605
P +++ ++ K++ +S S+ +S + +N ++ +T ++ AF ++P
Sbjct: 91 PRRKDLSNGDIDEHEKRSKRVS-SLNSSTHKSSDN---KVEETLTREQKEGAFSNFPISE 146
Query: 606 EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI 665
E ++ L+ T PIQ + + + G D+I A+TGTGKTF+F +P + I
Sbjct: 147 ETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETI 206
Query: 666 SERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREGCHILIA 725
+ P VLV+APTRELA Q+ ++ + K L C YGG + Q+ IR G IL+
Sbjct: 207 KKSRSPKVLVLAPTRELANQVAKDFKDVTRK-LSVACFYGGTSYQSQINHIRNGIDILVG 265
Query: 726 TPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQIN-------KTSIYINPNRQTV 778
TPGR+ D + +DL + VVLDE D+MLDLGF Q+ KT NP QT+
Sbjct: 266 TPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDILHESYKTDSEDNP--QTL 323
Query: 779 MTSATWNKDVQRVAKKYMVNPVK-VN-VGSLDLAATHTVTQKIIILDEDEKKDWLMEFFD 836
+ SAT + V +VAKKYM + + V+ VG + A TV I ++ + +
Sbjct: 324 LFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQ 383
Query: 837 NMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARIC 896
+ ++F K +V+ M+ + + C L+GD++Q REI L+ G ++
Sbjct: 384 VYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQC-LHGDIAQSQREITLKGFREGSFKVL 442
Query: 897 VATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
VAT+VA+RGLD+P++ VI P +E Y+HR GRTG
Sbjct: 443 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTG 480
Score = 40 (19.1 bits), Expect = 1.0e-53, Sum P(2) = 1.0e-53
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 411 GRTGRAGKSG 420
GR GR+G+SG
Sbjct: 685 GRLGRSGRSG 694
Score = 39 (18.8 bits), Expect = 1.3e-53, Sum P(2) = 1.3e-53
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 409 RVGRTGRAG-KSG 420
R+GR+GR+G +SG
Sbjct: 686 RLGRSGRSGGRSG 698
>UNIPROTKB|I3LV06 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:FP312674 RefSeq:XP_003357711.1
Ensembl:ENSSSCT00000031167 GeneID:100621580 KEGG:ssc:100621580
Uniprot:I3LV06
Length = 607
Score = 560 (202.2 bits), Expect = 1.5e-53, P = 1.5e-53
Identities = 129/378 (34%), Positives = 209/378 (55%)
Query: 70 IPNPVTSFKQAFQHYPEILR-QLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTF 128
+P P+ F +PE L L+ + P+PIQ Q P+ + G D++ A TG+GKT
Sbjct: 186 VPRPIIDFGHC--GFPETLNFNLKTAGYEVPTPIQMQMIPVGLLGRDLLASADTGSGKTA 243
Query: 129 AFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI--DYKGLKAVCVYGG 186
AFLLP + T + + PS LV+ PTRELA QIER+ ++ ++ + GG
Sbjct: 244 AFLLPVI------TRALVQSKAPSALVLTPTRELAIQIERQAKELMGGLPRMRTALLVGG 297
Query: 187 KEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINK 246
PQL ++R+ ++IATPGRL D + ++S+DL + VV+DEAD ML +GF+ Q+
Sbjct: 298 LPAPPQLHRLRQRVQVIIATPGRLLDIMKQSSVDLGNIKIVVVDEADTMLKMGFQEQVLD 357
Query: 247 TSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDE 306
+ + QT++ SAT ++++A + + +PV+V G +L +V Q ++ ++E
Sbjct: 358 VLENVPQDCQTILVSATIPTRIEQLASRLLHDPVRVLAGEKNLPCP-SVRQIVLWVEEPA 416
Query: 307 KKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLA-CQYRKSCSLYGDLSQEDREIAL 365
KK L E ++ + V+VF+ K +S + KS S++ + SQ +R+ L
Sbjct: 417 KKKKLFEILNDKKLFKPPVLVFVDCKLGADLLSEAVEKITGLKSTSMHSEKSQIERKTIL 476
Query: 366 EDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITL 425
E + G + V+T V RGLD+ + V+N+D PS ++EYVH+VGR GR G++G +IT
Sbjct: 477 EGLLEGDYDVVVSTGVLGRGLDLISVKLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITF 536
Query: 426 MTRKD----WSHAHEIIP 439
+ W A + P
Sbjct: 537 INNNSKRLFWDIAKRVKP 554
Score = 529 (191.3 bits), Expect = 8.0e-52, Sum P(2) = 8.0e-52
Identities = 121/349 (34%), Positives = 196/349 (56%)
Query: 590 IPNPVTSFKQAFQHYPEILR-QLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTF 648
+P P+ F +PE L L+ + P+PIQ Q P+ + G D++ A TG+GKT
Sbjct: 186 VPRPIIDFGHC--GFPETLNFNLKTAGYEVPTPIQMQMIPVGLLGRDLLASADTGSGKTA 243
Query: 649 AFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI--DYKGLKAVCVYGG 706
AFLLP + T + + PS LV+ PTRELA QIER+ ++ ++ + GG
Sbjct: 244 AFLLPVI------TRALVQSKAPSALVLTPTRELAIQIERQAKELMGGLPRMRTALLVGG 297
Query: 707 KELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINK 766
PQL ++R+ ++IATPGRL D + ++S+DL + VV+DEAD ML +GF+ Q+
Sbjct: 298 LPAPPQLHRLRQRVQVIIATPGRLLDIMKQSSVDLGNIKIVVVDEADTMLKMGFQEQVLD 357
Query: 767 TSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDE 826
+ + QT++ SAT ++++A + + +PV+V G +L +V Q ++ ++E
Sbjct: 358 VLENVPQDCQTILVSATIPTRIEQLASRLLHDPVRVLAGEKNLPCP-SVRQIVLWVEEPA 416
Query: 827 KKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLA-CQYRKSCSLYGDLSQEDREIAL 885
KK L E ++ + V+VF+ K +S + KS S++ + SQ +R+ L
Sbjct: 417 KKKKLFEILNDKKLFKPPVLVFVDCKLGADLLSEAVEKITGLKSTSMHSEKSQIERKTIL 476
Query: 886 EDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
E + G + V+T V RGLD+ + V+N+D PS ++EYVH+VGR G
Sbjct: 477 EGLLEGDYDVVVSTGVLGRGLDLISVKLVVNFDMPSSMDEYVHQVGRVG 525
Score = 136 (52.9 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 37/118 (31%), Positives = 58/118 (49%)
Query: 26 VYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYP 85
VY E ++N+ +Q+E R + + VV G +P P+ F +P
Sbjct: 155 VYTEHAFISNLREDQIENLR---GQLGI-VVEGRG---------VPRPIIDFGHC--GFP 199
Query: 86 EILR-QLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQT 142
E L L+ + P+PIQ Q P+ + G D++ A TG+GKT AFLLP + +Q+
Sbjct: 200 ETLNFNLKTAGYEVPTPIQMQMIPVGLLGRDLLASADTGSGKTAAFLLPVITRALVQS 257
Score = 136 (52.9 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 37/118 (31%), Positives = 58/118 (49%)
Query: 546 VYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYP 605
VY E ++N+ +Q+E R + + VV G +P P+ F +P
Sbjct: 155 VYTEHAFISNLREDQIENLR---GQLGI-VVEGRG---------VPRPIIDFGHC--GFP 199
Query: 606 EILR-QLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQT 662
E L L+ + P+PIQ Q P+ + G D++ A TG+GKT AFLLP + +Q+
Sbjct: 200 ETLNFNLKTAGYEVPTPIQMQMIPVGLLGRDLLASADTGSGKTAAFLLPVITRALVQS 257
Score = 40 (19.1 bits), Expect = 8.0e-52, Sum P(2) = 8.0e-52
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 416 AGKSGESITLMTRKDWSHAHEIIPILE 442
AG G ++T R+ +H H P+ E
Sbjct: 36 AGGFGPAVTSDPREPAAHPHPAGPVAE 62
>UNIPROTKB|I3LNN1 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:PIRNWKE Ensembl:ENSSSCT00000027880 Uniprot:I3LNN1
Length = 801
Score = 379 (138.5 bits), Expect = 7.9e-49, Sum P(4) = 7.9e-49
Identities = 95/255 (37%), Positives = 145/255 (56%)
Query: 521 MEELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDI---SVSVVT 577
ME+ L ++++ + AR K+ K K+ + + + ++++ ++ I S+ T
Sbjct: 324 MEKRRTLEEKEQEE--ARLRKLRKKEAKQRWDDRHWSQKKLDEMTDRDWRIFREDYSITT 381
Query: 578 SDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMI 637
G+I PNP+ S+K + P IL ++ + P+PIQ QA PI + D+I
Sbjct: 382 KGGKI--------PNPIRSWKDSSLP-PHILEVIDKCGYKEPTPIQRQAIPIGLQNRDII 432
Query: 638 GIAQTGTGKTFAFLLPALIHTHLQTTPISERA-----GPSVLVMAPTRELATQIEREVNK 692
G+A+TG+GKT AFL+P L+ + T P +R GP +++APTRELA QIE E K
Sbjct: 433 GVAETGSGKTAAFLIPLLVW--ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIK 490
Query: 693 IDYK-GLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDE 751
G++ V V GG E Q ++R GC I+IATPGRL D + + L ++VVLDE
Sbjct: 491 FGKPLGIRPVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDE 550
Query: 752 ADRMLDLGFEPQINK 766
ADRM+D+GFEP + K
Sbjct: 551 ADRMIDMGFEPDVQK 565
Score = 378 (138.1 bits), Expect = 2.4e-53, Sum P(2) = 2.4e-53
Identities = 95/255 (37%), Positives = 145/255 (56%)
Query: 1 MEELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDI---SVSVVT 57
ME+ L ++++ + AR K+ K K+ + + + ++++ ++ I S+ T
Sbjct: 324 MEKRRTLEEKEQEE--ARLRKLRKKEAKQRWDDRHWSQKKLDEMTDRDWRIFREDYSITT 381
Query: 58 SDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMI 117
G+I PNP+ S+K + P IL ++ + P+PIQ QA PI + D+I
Sbjct: 382 KGGKI--------PNPIRSWKDSSLP-PHILEVIDKCGYKEPTPIQRQAIPIGLQNRDII 432
Query: 118 GIAQTGTGKTFAFLLPALIHTHLQTTPISERA-----GPSVLVMAPTRELATQIEREVNK 172
G+A+TG+GKT AFL+P L+ + T P +R GP +++APTRELA QIE E K
Sbjct: 433 GVAETGSGKTAAFLIPLLVW--ITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIK 490
Query: 173 IDYK-GLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDE 231
G++ V V GG E Q ++R GC I+IATPGRL D + + L ++VVLDE
Sbjct: 491 FGKPLGIRPVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDE 550
Query: 232 ADRMLDLGFEPQINK 246
ADRM+D+GFEP + K
Sbjct: 551 ADRMIDMGFEPDVQK 565
Score = 258 (95.9 bits), Expect = 2.4e-53, Sum P(2) = 2.4e-53
Identities = 50/106 (47%), Positives = 74/106 (69%)
Query: 332 KASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDL 391
+A S +S QY +C+L+G QE RE AL ++ +G I VATDVA RG+D+ D+
Sbjct: 656 RAHCSFFTSPFFQQYN-ACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDV 714
Query: 392 THVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEI 437
+ V+NYD +IE+Y+HR+GRTGRAGKSG +IT +T++D + +E+
Sbjct: 715 SMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYEL 760
Score = 202 (76.2 bits), Expect = 7.9e-49, Sum P(4) = 7.9e-49
Identities = 39/83 (46%), Positives = 56/83 (67%)
Query: 852 KASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDL 911
+A S +S QY +C+L+G QE RE AL ++ +G I VATDVA RG+D+ D+
Sbjct: 656 RAHCSFFTSPFFQQYN-ACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDV 714
Query: 912 THVINYDFPSHIEEYVHRVGRTG 934
+ V+NYD +IE+Y+HR+GRTG
Sbjct: 715 SMVVNYDMAKNIEDYIHRIGRTG 737
Score = 65 (27.9 bits), Expect = 1.2e-32, Sum P(3) = 1.2e-32
Identities = 34/117 (29%), Positives = 51/117 (43%)
Query: 652 LPALIHTHLQTTPISERAGPSVLVMAPT--RELATQIERE----VNKIDYKGLKAVCVYG 705
LP+L H + P S P +L +P+ R L + R ++ A ++G
Sbjct: 618 LPSLSSAHPSSPPSSPSPSPLLLCASPSLSRSLCCVLPRAHCSFFTSPFFQQYNACTLHG 677
Query: 706 GKELEPQ---LEKIREGCH-ILIATPGRLNDFVSRASIDLKAVSFVV-LDEADRMLD 757
GK E + L ++ G IL+AT D R ID++ VS VV D A + D
Sbjct: 678 GKGQEQREFALSNLKAGAKDILVAT-----DVAGRG-IDIQDVSMVVNYDMAKNIED 728
Score = 56 (24.8 bits), Expect = 7.9e-49, Sum P(4) = 7.9e-49
Identities = 26/121 (21%), Positives = 57/121 (47%)
Query: 255 RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEF 314
RQ + +K++ + ++Y+ +K T + + + + D +D +++
Sbjct: 234 RQKIREEKDKSKELHAIKERYL-GGIKKR------RRTRHLNDRKFVFEWDASEDTSIDY 286
Query: 315 FDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYAR 374
+ + +ER +V + +GR ++ + DL Q R+ YGDL ++ R LE+ AR
Sbjct: 287 -NPLYKERHQVQL-LGR-GFIAGI--DLKQQKREQSRFYGDLMEKRR--TLEEKEQEEAR 339
Query: 375 I 375
+
Sbjct: 340 L 340
Score = 45 (20.9 bits), Expect = 6.2e-13, Sum P(5) = 6.2e-13
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 419 SGESITLMTRKDWSHAHEIIPILEEGGHESYMI--WRRDSRIALHVI 463
S + + MT +DW E I +GG I W+ DS + H++
Sbjct: 358 SQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWK-DSSLPPHIL 403
Score = 41 (19.5 bits), Expect = 7.9e-49, Sum P(4) = 7.9e-49
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 206 TPGRLNDFVSRASIDLK 222
+PGR DF SR D K
Sbjct: 109 SPGRGKDFKSRKDRDFK 125
Score = 41 (19.5 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 726 TPGRLNDFVSRASIDLK 742
+PGR DF SR D K
Sbjct: 109 SPGRGKDFKSRKDRDFK 125
Score = 40 (19.1 bits), Expect = 7.8e-11, Sum P(3) = 7.8e-11
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 510 DLGRHIDPEPTMEELMALSDRKERDKWAREPKIIKNVYKEDPE 552
DLGR + +P E +R ER+ E + + +E+ +
Sbjct: 200 DLGRKMLEDPQERERRERRERMERETNGNEDEEGRQKIREEKD 242
Score = 39 (18.8 bits), Expect = 6.7e-47, Sum P(3) = 6.7e-47
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 509 IDLGRHIDPEPTMEELMALSDRKERDKWAREP-KIIKN 545
ID+G D + +E + + + + D+ A +P K++ N
Sbjct: 555 IDMGFEPDVQKILEHMPVSNQKPDTDE-AEDPEKMLAN 591
>UNIPROTKB|Q5T1V6 [details] [associations]
symbol:DDX59 "Probable ATP-dependent RNA helicase DDX59"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 PROSITE:PS51083
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AL136611 EMBL:AL445483 EMBL:BC014183 EMBL:BC041801
IPI:IPI00010449 IPI:IPI00217157 RefSeq:NP_001026895.2
UniGene:Hs.497332 PDB:2YQP PDBsum:2YQP ProteinModelPortal:Q5T1V6
SMR:Q5T1V6 PhosphoSite:Q5T1V6 DMDM:74762230 PaxDb:Q5T1V6
PRIDE:Q5T1V6 DNASU:83479 Ensembl:ENST00000331314
Ensembl:ENST00000447706 GeneID:83479 KEGG:hsa:83479 UCSC:uc009wzk.3
CTD:83479 GeneCards:GC01M200594 HGNC:HGNC:25360 HPA:HPA047166
neXtProt:NX_Q5T1V6 PharmGKB:PA142672000 HOGENOM:HOG000006599
HOVERGEN:HBG106120 InParanoid:Q5T1V6 OMA:VTRPIID PhylomeDB:Q5T1V6
EvolutionaryTrace:Q5T1V6 GenomeRNAi:83479 NextBio:72419
ArrayExpress:Q5T1V6 Bgee:Q5T1V6 CleanEx:HS_DDX59
Genevestigator:Q5T1V6 Uniprot:Q5T1V6
Length = 619
Score = 557 (201.1 bits), Expect = 3.1e-53, P = 3.1e-53
Identities = 132/382 (34%), Positives = 215/382 (56%)
Query: 69 QIPNPVTSFKQAFQHYPEILRQ-LENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKT 127
++ P+ F+ PE+L L+ + P+PIQ Q P+ + G D++ A TG+GKT
Sbjct: 197 EVTRPIIDFEHC--SLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKT 254
Query: 128 FAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGL---KAVCVY 184
AFLLP ++ + E PS L++ PTRELA QIER+ ++ GL K V +
Sbjct: 255 AAFLLPVIMRA------LFESKTPSALILTPTRELAIQIERQAKEL-MSGLPRMKTVLLV 307
Query: 185 GGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQI 244
GG + PQL ++++ ++IATPGRL D + ++S++L V VV+DEAD ML +GF+ Q+
Sbjct: 308 GGLPLPPQLYRLQQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQV 367
Query: 245 NKTSIYIN-PNR-QTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIIL 302
I N PN QT++ SAT ++++A + + NPV++ G +L + V Q I+ +
Sbjct: 368 --LDILENIPNDCQTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCAN-VRQIILWV 424
Query: 303 DEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLA-CQYRKSCSLYGDLSQEDR 361
++ KK L E ++ + V+VF+ K +S + KS S++ + SQ +R
Sbjct: 425 EDPAKKKKLFEILNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIER 484
Query: 362 EIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGE 421
+ L+ + G + V+T V RGLD+ + V+N+D PS ++EYVH++GR GR G++G
Sbjct: 485 KNILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGT 544
Query: 422 SITLMTRKD----WSHAHEIIP 439
+IT + W A + P
Sbjct: 545 AITFINNNSKRLFWDIAKRVKP 566
Score = 528 (190.9 bits), Expect = 4.7e-50, P = 4.7e-50
Identities = 125/353 (35%), Positives = 202/353 (57%)
Query: 589 QIPNPVTSFKQAFQHYPEILRQ-LENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKT 647
++ P+ F+ PE+L L+ + P+PIQ Q P+ + G D++ A TG+GKT
Sbjct: 197 EVTRPIIDFEHC--SLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKT 254
Query: 648 FAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGL---KAVCVY 704
AFLLP ++ + E PS L++ PTRELA QIER+ ++ GL K V +
Sbjct: 255 AAFLLPVIMRA------LFESKTPSALILTPTRELAIQIERQAKEL-MSGLPRMKTVLLV 307
Query: 705 GGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQI 764
GG L PQL ++++ ++IATPGRL D + ++S++L V VV+DEAD ML +GF+ Q+
Sbjct: 308 GGLPLPPQLYRLQQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQV 367
Query: 765 NKTSIYIN-PNR-QTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIIL 822
I N PN QT++ SAT ++++A + + NPV++ G +L + V Q I+ +
Sbjct: 368 --LDILENIPNDCQTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCAN-VRQIILWV 424
Query: 823 DEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLA-CQYRKSCSLYGDLSQEDR 881
++ KK L E ++ + V+VF+ K +S + KS S++ + SQ +R
Sbjct: 425 EDPAKKKKLFEILNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIER 484
Query: 882 EIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
+ L+ + G + V+T V RGLD+ + V+N+D PS ++EYVH++GR G
Sbjct: 485 KNILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVG 537
Score = 163 (62.4 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 45/154 (29%), Positives = 76/154 (49%)
Query: 513 RHIDPEPTMEELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDIS 572
+H+ EE LS+ ++ D P VYKE P + N+ +Q+E +++ +
Sbjct: 134 KHLLQVKEKEEKSKLSNPQKADSEPESPLNASYVYKEHPFILNLQEDQIENLKQQ---LG 190
Query: 573 VSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQ-LENLSFTTPSPIQAQAWPILM 631
+ V GQ ++ P+ F+ PE+L L+ + P+PIQ Q P+ +
Sbjct: 191 ILV---QGQ-------EVTRPIIDFEHC--SLPEVLNHNLKKSGYEVPTPIQMQMIPVGL 238
Query: 632 SGHDMIGIAQTGTGKTFAFLLPALIHTHLQT-TP 664
G D++ A TG+GKT AFLLP ++ ++ TP
Sbjct: 239 LGRDILASADTGSGKTAAFLLPVIMRALFESKTP 272
Score = 161 (61.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 44/145 (30%), Positives = 73/145 (50%)
Query: 2 EELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQ 61
EE LS+ ++ D P VYKE P + N+ +Q+E +++ + + V GQ
Sbjct: 143 EEKSKLSNPQKADSEPESPLNASYVYKEHPFILNLQEDQIENLKQQ---LGILV---QGQ 196
Query: 62 IDENPDFQIPNPVTSFKQAFQHYPEILRQ-LENLSFTTPSPIQAQAWPILMSGHDMIGIA 120
++ P+ F+ PE+L L+ + P+PIQ Q P+ + G D++ A
Sbjct: 197 -------EVTRPIIDFEHC--SLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASA 247
Query: 121 QTGTGKTFAFLLPALIHTHLQT-TP 144
TG+GKT AFLLP ++ ++ TP
Sbjct: 248 DTGSGKTAAFLLPVIMRALFESKTP 272
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 556 (200.8 bits), Expect = 4.0e-53, P = 4.0e-53
Identities = 121/348 (34%), Positives = 207/348 (59%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 146
+++ + L + P+ IQ QA P+++ G D+I AQTGTGKT +F+LP L T
Sbjct: 12 LVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKLRQGQTQRK 71
Query: 147 ERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEIEPQLEKIREGCHILIA 205
+R L++ PTRELA Q+ +V + GLK++ V+GG + + Q +++ +G +L+A
Sbjct: 72 KRV--RALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVDVLVA 129
Query: 206 TPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWN 265
TPGRL D + ++ + + VVLDEADRMLD+GF INK + Q ++ SAT +
Sbjct: 130 TPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFSATLS 189
Query: 266 KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKV 325
+ V+ +AK + +P ++++ + + A+ ++Q +I +D+D K L + +++ D+
Sbjct: 190 RKVRELAKTAVRDPHEISIAA-NQASKSNISQWLITVDKDTKSALLSHLIN--EQQWDQA 246
Query: 326 MVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRG 385
++F+ K + + S L + + + + SQ R LED SG + VAT VA+RG
Sbjct: 247 LIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAARG 306
Query: 386 LDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSH 433
+D+ L+ V+NYD P +EYVHR+GRTGRA GE+I+ +++ ++ +
Sbjct: 307 IDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKN 354
Score = 529 (191.3 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 116/329 (35%), Positives = 194/329 (58%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 666
+++ + L + P+ IQ QA P+++ G D+I AQTGTGKT +F+LP L T
Sbjct: 12 LVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKLRQGQTQRK 71
Query: 667 ERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKELEPQLEKIREGCHILIA 725
+R L++ PTRELA Q+ +V + GLK++ V+GG + + Q +++ +G +L+A
Sbjct: 72 KRV--RALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVDVLVA 129
Query: 726 TPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWN 785
TPGRL D + ++ + + VVLDEADRMLD+GF INK + Q ++ SAT +
Sbjct: 130 TPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFSATLS 189
Query: 786 KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKV 845
+ V+ +AK + +P ++++ + + A+ ++Q +I +D+D K L + +++ D+
Sbjct: 190 RKVRELAKTAVRDPHEISIAA-NQASKSNISQWLITVDKDTKSALLSHLIN--EQQWDQA 246
Query: 846 MVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRG 905
++F+ K + + S L + + + + SQ R LED SG + VAT VA+RG
Sbjct: 247 LIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAARG 306
Query: 906 LDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
+D+ L+ V+NYD P +EYVHR+GRTG
Sbjct: 307 IDIDQLSRVVNYDLPFPADEYVHRIGRTG 335
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 556 (200.8 bits), Expect = 4.0e-53, P = 4.0e-53
Identities = 121/348 (34%), Positives = 207/348 (59%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 146
+++ + L + P+ IQ QA P+++ G D+I AQTGTGKT +F+LP L T
Sbjct: 12 LVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKLRQGQTQRK 71
Query: 147 ERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEIEPQLEKIREGCHILIA 205
+R L++ PTRELA Q+ +V + GLK++ V+GG + + Q +++ +G +L+A
Sbjct: 72 KRV--RALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVDVLVA 129
Query: 206 TPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWN 265
TPGRL D + ++ + + VVLDEADRMLD+GF INK + Q ++ SAT +
Sbjct: 130 TPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFSATLS 189
Query: 266 KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKV 325
+ V+ +AK + +P ++++ + + A+ ++Q +I +D+D K L + +++ D+
Sbjct: 190 RKVRELAKTAVRDPHEISIAA-NQASKSNISQWLITVDKDTKSALLSHLIN--EQQWDQA 246
Query: 326 MVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRG 385
++F+ K + + S L + + + + SQ R LED SG + VAT VA+RG
Sbjct: 247 LIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAARG 306
Query: 386 LDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSH 433
+D+ L+ V+NYD P +EYVHR+GRTGRA GE+I+ +++ ++ +
Sbjct: 307 IDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKN 354
Score = 529 (191.3 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 116/329 (35%), Positives = 194/329 (58%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPIS 666
+++ + L + P+ IQ QA P+++ G D+I AQTGTGKT +F+LP L T
Sbjct: 12 LVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKLRQGQTQRK 71
Query: 667 ERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKELEPQLEKIREGCHILIA 725
+R L++ PTRELA Q+ +V + GLK++ V+GG + + Q +++ +G +L+A
Sbjct: 72 KRV--RALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVDVLVA 129
Query: 726 TPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWN 785
TPGRL D + ++ + + VVLDEADRMLD+GF INK + Q ++ SAT +
Sbjct: 130 TPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFSATLS 189
Query: 786 KDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKV 845
+ V+ +AK + +P ++++ + + A+ ++Q +I +D+D K L + +++ D+
Sbjct: 190 RKVRELAKTAVRDPHEISIAA-NQASKSNISQWLITVDKDTKSALLSHLIN--EQQWDQA 246
Query: 846 MVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRG 905
++F+ K + + S L + + + + SQ R LED SG + VAT VA+RG
Sbjct: 247 LIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAARG 306
Query: 906 LDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
+D+ L+ V+NYD P +EYVHR+GRTG
Sbjct: 307 IDIDQLSRVVNYDLPFPADEYVHRIGRTG 335
>UNIPROTKB|Q11039 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A homolog"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
ProtClustDB:CLSK791051 Uniprot:Q11039
Length = 563
Score = 556 (200.8 bits), Expect = 4.0e-53, P = 4.0e-53
Identities = 126/367 (34%), Positives = 203/367 (55%)
Query: 66 PDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTG 125
P++ +F Q +P +LR + ++ + +P+ IQA P LM+G D++G+AQTGTG
Sbjct: 4 PEYSPAASAATFAD-LQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTG 62
Query: 126 KTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID-YKG-LKAVCV 183
KT AF +P L + T+ + P LV+ PTRELA Q+ + Y L + +
Sbjct: 63 KTAAFAIPMLSKIDI-TSKV-----PQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPI 116
Query: 184 YGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQ 243
YGG QL +R G +++ TPGR+ D + RA++DL V F+VLDEAD ML +GF
Sbjct: 117 YGGSSYAVQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADD 176
Query: 244 INKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD 303
+ + +Q + SAT +++++ KY+ +P +V + A ++Q I +
Sbjct: 177 VERILSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKA-KTAVAENISQSYIQVA 235
Query: 304 EDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREI 363
K D L + E + ++VF+ K + ++ L + + ++ GD+ Q RE
Sbjct: 236 R--KMDALTRVLEV--EPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRER 291
Query: 364 ALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESI 423
+ + G I VATDVA+RGLDV ++HV+NYD P E YVHR+GRTGRAG+SG ++
Sbjct: 292 TITALRDGDIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAAL 351
Query: 424 TLMTRKD 430
++ ++
Sbjct: 352 IFVSPRE 358
Score = 524 (189.5 bits), Expect = 1.3e-49, P = 1.3e-49
Identities = 121/351 (34%), Positives = 191/351 (54%)
Query: 586 PDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTG 645
P++ +F Q +P +LR + ++ + +P+ IQA P LM+G D++G+AQTGTG
Sbjct: 4 PEYSPAASAATFAD-LQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTG 62
Query: 646 KTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKID-YKG-LKAVCV 703
KT AF +P L + T+ + P LV+ PTRELA Q+ + Y L + +
Sbjct: 63 KTAAFAIPMLSKIDI-TSKV-----PQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPI 116
Query: 704 YGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQ 763
YGG QL +R G +++ TPGR+ D + RA++DL V F+VLDEAD ML +GF
Sbjct: 117 YGGSSYAVQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADD 176
Query: 764 INKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILD 823
+ + +Q + SAT +++++ KY+ +P +V + A ++Q I +
Sbjct: 177 VERILSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKA-KTAVAENISQSYIQVA 235
Query: 824 EDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREI 883
K D L + E + ++VF+ K + ++ L + + ++ GD+ Q RE
Sbjct: 236 R--KMDALTRVLEV--EPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRER 291
Query: 884 ALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
+ + G I VATDVA+RGLDV ++HV+NYD P E YVHR+GRTG
Sbjct: 292 TITALRDGDIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTG 342
>TAIR|locus:2087832 [details] [associations]
symbol:PMH1 "putative mitochondrial RNA helicase 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IMP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0043234 GO:GO:0003677 GO:GO:0009651
GO:GO:0009409 GO:GO:0009414 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268800 ProtClustDB:CLSN2684125 EMBL:AY091091
EMBL:AJ010461 IPI:IPI00517476 PIR:T51341 RefSeq:NP_188870.1
UniGene:At.25190 ProteinModelPortal:Q9LUW6 SMR:Q9LUW6 IntAct:Q9LUW6
STRING:Q9LUW6 PaxDb:Q9LUW6 PRIDE:Q9LUW6 EnsemblPlants:AT3G22310.1
GeneID:821800 KEGG:ath:AT3G22310 GeneFarm:922 TAIR:At3g22310
InParanoid:Q9LUW6 OMA:VSQGRQV PhylomeDB:Q9LUW6
Genevestigator:Q9LUW6 GermOnline:AT3G22310 Uniprot:Q9LUW6
Length = 610
Score = 555 (200.4 bits), Expect = 5.2e-53, P = 5.2e-53
Identities = 135/357 (37%), Positives = 197/357 (55%)
Query: 85 PEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTP 144
PEI++ L+ PIQ M G DMIG A+TGTGKT AF +P +I ++
Sbjct: 125 PEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIP-IIDKIIKFNA 183
Query: 145 ISERA-GPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCHIL 203
R P LV+APTRELA Q+E+E + L +C+YGG I Q+ ++ G +
Sbjct: 184 KHGRGKNPQCLVLAPTRELARQVEKEFRE-SAPSLDTICLYGGTPIGQQMRELNYGIDVA 242
Query: 204 IATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSAT 263
+ TPGR+ D + R +++L V FVVLDEAD+ML +GF + + RQ++M SAT
Sbjct: 243 VGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMFSAT 302
Query: 264 WNKDVQRVAKKYMVNPVKVN-VGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEER 322
++ + KKY+ NP+ ++ VG D +T I D + + +
Sbjct: 303 MPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVKEHGKG- 361
Query: 323 DKVMVFMGRKASVSAMSSDLACQYRKSC-SLYGDLSQEDREIALEDITSGYARICVATDV 381
K +VF K ++ LA Y+ C +L+GD+SQ RE L G I VATDV
Sbjct: 362 GKCIVFTQTKRDADRLAFGLAKSYK--CEALHGDISQAQRERTLAGFRDGNFSILVATDV 419
Query: 382 ASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEII 438
A+RGLDVP++ VI+Y+ P++ E +VHR GRTGRAGK G +I L+ +D + A ++I
Sbjct: 420 AARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAI-LIHGQDQTRAVKMI 475
Score = 517 (187.1 bits), Expect = 7.4e-49, P = 7.4e-49
Identities = 124/333 (37%), Positives = 181/333 (54%)
Query: 605 PEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTP 664
PEI++ L+ PIQ M G DMIG A+TGTGKT AF +P +I ++
Sbjct: 125 PEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIP-IIDKIIKFNA 183
Query: 665 ISERA-GPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREGCHIL 723
R P LV+APTRELA Q+E+E + L +C+YGG + Q+ ++ G +
Sbjct: 184 KHGRGKNPQCLVLAPTRELARQVEKEFRE-SAPSLDTICLYGGTPIGQQMRELNYGIDVA 242
Query: 724 IATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSAT 783
+ TPGR+ D + R +++L V FVVLDEAD+ML +GF + + RQ++M SAT
Sbjct: 243 VGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMFSAT 302
Query: 784 WNKDVQRVAKKYMVNPVKVN-VGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEER 842
++ + KKY+ NP+ ++ VG D +T I D + + +
Sbjct: 303 MPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVKEHGKG- 361
Query: 843 DKVMVFMGRKASVSAMSSDLACQYRKSC-SLYGDLSQEDREIALEDITSGYARICVATDV 901
K +VF K ++ LA Y+ C +L+GD+SQ RE L G I VATDV
Sbjct: 362 GKCIVFTQTKRDADRLAFGLAKSYK--CEALHGDISQAQRERTLAGFRDGNFSILVATDV 419
Query: 902 ASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
A+RGLDVP++ VI+Y+ P++ E +VHR GRTG
Sbjct: 420 AARGLDVPNVDLVIHYELPNNTETFVHRTGRTG 452
>GENEDB_PFALCIPARUM|PF08_0096 [details] [associations]
symbol:PF08_0096 "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0003724 "RNA helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 KO:K11594
HSSP:P10081 EMBL:AL844507 RefSeq:XP_001349420.1
ProteinModelPortal:Q8IAU1 IntAct:Q8IAU1 MINT:MINT-1660402
EnsemblProtists:PF08_0096:mRNA GeneID:2655295 KEGG:pfa:PF08_0096
EuPathDB:PlasmoDB:PF3D7_0810600 HOGENOM:HOG000280970 OMA:NNPFNNN
ProtClustDB:CLSZ2432713 Uniprot:Q8IAU1
Length = 941
Score = 327 (120.2 bits), Expect = 7.6e-53, Sum P(2) = 7.6e-53
Identities = 84/213 (39%), Positives = 123/213 (57%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTP-- 144
+L ++ +++ +PIQ + I+M+ +D+IG+AQTG+GKT +LLP + H + P
Sbjct: 373 LLSNIKKVNYDKTTPIQKYSLNIIMNRNDLIGVAQTGSGKTAGYLLPIINHMLINDPPKH 432
Query: 145 -ISERAG------------PSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEIE 190
E+ P L++APTRELA QI + K ++ G+K V +YGG I+
Sbjct: 433 TYYEQNNKTSNYYFNRVCLPICLILAPTRELAVQIFYDAKKFCFETGIKPVVLYGGNNIK 492
Query: 191 PQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINK-TSI 249
QL + +G I++ATPGRLND + + I L +F+VLDEADRMLD+GF PQI +
Sbjct: 493 TQLSNLDKGADIIVATPGRLNDILEKGKIKLFLTTFLVLDEADRMLDMGFSPQIRSIVND 552
Query: 250 YINP-NRQTVMTSATWNKDVQRVAKKYMVNPVK 281
Y P N V TS NK V+ KKY + +K
Sbjct: 553 YDMPGNDNDVHTSE--NK-VEY--KKYCNDIIK 580
Score = 325 (119.5 bits), Expect = 1.1e-49, Sum P(2) = 1.1e-49
Identities = 83/213 (38%), Positives = 123/213 (57%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTP-- 664
+L ++ +++ +PIQ + I+M+ +D+IG+AQTG+GKT +LLP + H + P
Sbjct: 373 LLSNIKKVNYDKTTPIQKYSLNIIMNRNDLIGVAQTGSGKTAGYLLPIINHMLINDPPKH 432
Query: 665 -ISERAG------------PSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKELE 710
E+ P L++APTRELA QI + K ++ G+K V +YGG ++
Sbjct: 433 TYYEQNNKTSNYYFNRVCLPICLILAPTRELAVQIFYDAKKFCFETGIKPVVLYGGNNIK 492
Query: 711 PQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINK-TSI 769
QL + +G I++ATPGRLND + + I L +F+VLDEADRMLD+GF PQI +
Sbjct: 493 TQLSNLDKGADIIVATPGRLNDILEKGKIKLFLTTFLVLDEADRMLDMGFSPQIRSIVND 552
Query: 770 YINP-NRQTVMTSATWNKDVQRVAKKYMVNPVK 801
Y P N V TS NK V+ KKY + +K
Sbjct: 553 YDMPGNDNDVHTSE--NK-VEY--KKYCNDIIK 580
Score = 310 (114.2 bits), Expect = 7.6e-53, Sum P(2) = 7.6e-53
Identities = 64/189 (33%), Positives = 113/189 (59%)
Query: 255 RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEF 314
RQT+M SAT+ K++Q +AK+Y+ + VG + + + Q ++ ++E+ K ++L+
Sbjct: 581 RQTIMFSATFRKEIQVLAKEYLCKYTFLLVGKVG-STNEYIKQNLVFVEEENKCNYLLNL 639
Query: 315 FDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYAR 374
+ ++F+ K + L+ Q + ++GD SQ++RE AL+ G
Sbjct: 640 L--AENNNGLTILFVETKRKADIIERFLSNQKLNAVCIHGDKSQDERERALKLFKRGIKN 697
Query: 375 ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHA 434
I VATDVA+RGLD+ ++ HVIN+D PS+I++Y+HR+GRTGRAG G + + + + +
Sbjct: 698 ILVATDVAARGLDISNIKHVINFDLPSNIDDYIHRIGRTGRAGNIGIATSFVNEDNKNIF 757
Query: 435 HEIIPILEE 443
+++ LEE
Sbjct: 758 KDLLATLEE 766
Score = 282 (104.3 bits), Expect = 6.7e-50, Sum P(2) = 6.7e-50
Identities = 57/160 (35%), Positives = 98/160 (61%)
Query: 775 RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEF 834
RQT+M SAT+ K++Q +AK+Y+ + VG + + + Q ++ ++E+ K ++L+
Sbjct: 581 RQTIMFSATFRKEIQVLAKEYLCKYTFLLVGKVG-STNEYIKQNLVFVEEENKCNYLLNL 639
Query: 835 FDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYAR 894
+ ++F+ K + L+ Q + ++GD SQ++RE AL+ G
Sbjct: 640 L--AENNNGLTILFVETKRKADIIERFLSNQKLNAVCIHGDKSQDERERALKLFKRGIKN 697
Query: 895 ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
I VATDVA+RGLD+ ++ HVIN+D PS+I++Y+HR+GRTG
Sbjct: 698 ILVATDVAARGLDISNIKHVINFDLPSNIDDYIHRIGRTG 737
Score = 60 (26.2 bits), Expect = 1.3e-26, Sum P(2) = 1.3e-26
Identities = 24/88 (27%), Positives = 43/88 (48%)
Query: 665 ISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGK---ELEPQLEKIREGC- 720
++E ++ T+ A IER ++ + L AVC++G K E E L+ + G
Sbjct: 640 LAENNNGLTILFVETKRKADIIERFLSN---QKLNAVCIHGDKSQDERERALKLFKRGIK 696
Query: 721 HILIATPGRLNDFVSRASIDLKAVSFVV 748
+IL+AT D +R +D+ + V+
Sbjct: 697 NILVAT-----DVAARG-LDISNIKHVI 718
>UNIPROTKB|Q8IAU1 [details] [associations]
symbol:PF08_0096 "RNA helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0003724 "RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 KO:K11594
HSSP:P10081 EMBL:AL844507 RefSeq:XP_001349420.1
ProteinModelPortal:Q8IAU1 IntAct:Q8IAU1 MINT:MINT-1660402
EnsemblProtists:PF08_0096:mRNA GeneID:2655295 KEGG:pfa:PF08_0096
EuPathDB:PlasmoDB:PF3D7_0810600 HOGENOM:HOG000280970 OMA:NNPFNNN
ProtClustDB:CLSZ2432713 Uniprot:Q8IAU1
Length = 941
Score = 327 (120.2 bits), Expect = 7.6e-53, Sum P(2) = 7.6e-53
Identities = 84/213 (39%), Positives = 123/213 (57%)
Query: 87 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTP-- 144
+L ++ +++ +PIQ + I+M+ +D+IG+AQTG+GKT +LLP + H + P
Sbjct: 373 LLSNIKKVNYDKTTPIQKYSLNIIMNRNDLIGVAQTGSGKTAGYLLPIINHMLINDPPKH 432
Query: 145 -ISERAG------------PSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEIE 190
E+ P L++APTRELA QI + K ++ G+K V +YGG I+
Sbjct: 433 TYYEQNNKTSNYYFNRVCLPICLILAPTRELAVQIFYDAKKFCFETGIKPVVLYGGNNIK 492
Query: 191 PQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINK-TSI 249
QL + +G I++ATPGRLND + + I L +F+VLDEADRMLD+GF PQI +
Sbjct: 493 TQLSNLDKGADIIVATPGRLNDILEKGKIKLFLTTFLVLDEADRMLDMGFSPQIRSIVND 552
Query: 250 YINP-NRQTVMTSATWNKDVQRVAKKYMVNPVK 281
Y P N V TS NK V+ KKY + +K
Sbjct: 553 YDMPGNDNDVHTSE--NK-VEY--KKYCNDIIK 580
Score = 325 (119.5 bits), Expect = 1.1e-49, Sum P(2) = 1.1e-49
Identities = 83/213 (38%), Positives = 123/213 (57%)
Query: 607 ILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTP-- 664
+L ++ +++ +PIQ + I+M+ +D+IG+AQTG+GKT +LLP + H + P
Sbjct: 373 LLSNIKKVNYDKTTPIQKYSLNIIMNRNDLIGVAQTGSGKTAGYLLPIINHMLINDPPKH 432
Query: 665 -ISERAG------------PSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKELE 710
E+ P L++APTRELA QI + K ++ G+K V +YGG ++
Sbjct: 433 TYYEQNNKTSNYYFNRVCLPICLILAPTRELAVQIFYDAKKFCFETGIKPVVLYGGNNIK 492
Query: 711 PQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINK-TSI 769
QL + +G I++ATPGRLND + + I L +F+VLDEADRMLD+GF PQI +
Sbjct: 493 TQLSNLDKGADIIVATPGRLNDILEKGKIKLFLTTFLVLDEADRMLDMGFSPQIRSIVND 552
Query: 770 YINP-NRQTVMTSATWNKDVQRVAKKYMVNPVK 801
Y P N V TS NK V+ KKY + +K
Sbjct: 553 YDMPGNDNDVHTSE--NK-VEY--KKYCNDIIK 580
Score = 310 (114.2 bits), Expect = 7.6e-53, Sum P(2) = 7.6e-53
Identities = 64/189 (33%), Positives = 113/189 (59%)
Query: 255 RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEF 314
RQT+M SAT+ K++Q +AK+Y+ + VG + + + Q ++ ++E+ K ++L+
Sbjct: 581 RQTIMFSATFRKEIQVLAKEYLCKYTFLLVGKVG-STNEYIKQNLVFVEEENKCNYLLNL 639
Query: 315 FDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYAR 374
+ ++F+ K + L+ Q + ++GD SQ++RE AL+ G
Sbjct: 640 L--AENNNGLTILFVETKRKADIIERFLSNQKLNAVCIHGDKSQDERERALKLFKRGIKN 697
Query: 375 ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHA 434
I VATDVA+RGLD+ ++ HVIN+D PS+I++Y+HR+GRTGRAG G + + + + +
Sbjct: 698 ILVATDVAARGLDISNIKHVINFDLPSNIDDYIHRIGRTGRAGNIGIATSFVNEDNKNIF 757
Query: 435 HEIIPILEE 443
+++ LEE
Sbjct: 758 KDLLATLEE 766
Score = 282 (104.3 bits), Expect = 6.7e-50, Sum P(2) = 6.7e-50
Identities = 57/160 (35%), Positives = 98/160 (61%)
Query: 775 RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEF 834
RQT+M SAT+ K++Q +AK+Y+ + VG + + + Q ++ ++E+ K ++L+
Sbjct: 581 RQTIMFSATFRKEIQVLAKEYLCKYTFLLVGKVG-STNEYIKQNLVFVEEENKCNYLLNL 639
Query: 835 FDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYAR 894
+ ++F+ K + L+ Q + ++GD SQ++RE AL+ G
Sbjct: 640 L--AENNNGLTILFVETKRKADIIERFLSNQKLNAVCIHGDKSQDERERALKLFKRGIKN 697
Query: 895 ICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
I VATDVA+RGLD+ ++ HVIN+D PS+I++Y+HR+GRTG
Sbjct: 698 ILVATDVAARGLDISNIKHVINFDLPSNIDDYIHRIGRTG 737
Score = 60 (26.2 bits), Expect = 1.3e-26, Sum P(2) = 1.3e-26
Identities = 24/88 (27%), Positives = 43/88 (48%)
Query: 665 ISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGK---ELEPQLEKIREGC- 720
++E ++ T+ A IER ++ + L AVC++G K E E L+ + G
Sbjct: 640 LAENNNGLTILFVETKRKADIIERFLSN---QKLNAVCIHGDKSQDERERALKLFKRGIK 696
Query: 721 HILIATPGRLNDFVSRASIDLKAVSFVV 748
+IL+AT D +R +D+ + V+
Sbjct: 697 NILVAT-----DVAARG-LDISNIKHVI 718
WARNING: HSPs involving 716 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.134 0.388 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 936 905 0.00089 122 3 11 22 0.40 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 966
No. of states in DFA: 623 (66 KB)
Total size of DFA: 410 KB (2191 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 83.46u 0.14s 83.60t Elapsed: 00:00:19
Total cpu time: 83.64u 0.14s 83.78t Elapsed: 00:00:20
Start: Thu Aug 15 11:45:19 2013 End: Thu Aug 15 11:45:39 2013
WARNINGS ISSUED: 2