RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7557
(936 letters)
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 165 bits (418), Expect = 4e-47
Identities = 64/202 (31%), Positives = 116/202 (57%), Gaps = 10/202 (4%)
Query: 85 PEILRQLENLSFTTPSPIQAQAWPILMSG-HDMIGIAQTGTGKTFAFLLPALIHTHLQTT 143
IL + N F P+ IQ + P+ ++ ++++ A+TG+GKT +F +P + +
Sbjct: 13 DNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENN- 71
Query: 144 PISERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHI 202
G +++ PTRELA Q+ E+ + K LK +YGGK I PQ++ ++ +I
Sbjct: 72 ------GIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANI 124
Query: 203 LIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSA 262
++ TPGR+ D ++R +++LK V + +LDEAD ML++GF + K N +++ ++ SA
Sbjct: 125 VVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSA 184
Query: 263 TWNKDVQRVAKKYMVNPVKVNV 284
T +++ +AKKYM + +
Sbjct: 185 TMPREILNLAKKYMGDYSFIKA 206
Score = 164 bits (416), Expect = 8e-47
Identities = 63/202 (31%), Positives = 116/202 (57%), Gaps = 10/202 (4%)
Query: 605 PEILRQLENLSFTTPSPIQAQAWPILMSG-HDMIGIAQTGTGKTFAFLLPALIHTHLQTT 663
IL + N F P+ IQ + P+ ++ ++++ A+TG+GKT +F +P + +
Sbjct: 13 DNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENN- 71
Query: 664 PISERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHI 722
G +++ PTRELA Q+ E+ + K LK +YGGK + PQ++ ++ +I
Sbjct: 72 ------GIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANI 124
Query: 723 LIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSA 782
++ TPGR+ D ++R +++LK V + +LDEAD ML++GF + K N +++ ++ SA
Sbjct: 125 VVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSA 184
Query: 783 TWNKDVQRVAKKYMVNPVKVNV 804
T +++ +AKKYM + +
Sbjct: 185 TMPREILNLAKKYMGDYSFIKA 206
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 164 bits (416), Expect = 1e-46
Identities = 96/247 (38%), Positives = 143/247 (57%), Gaps = 17/247 (6%)
Query: 47 KNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQA 106
K + I VSV PD+ N + +F + P I + S+ P+PIQ A
Sbjct: 1 KYDSIPVSV--------TGPDYSATNVIENFDELKLD-PTIRNNILLASYQRPTPIQKNA 51
Query: 107 WPILMSGHDMIGIAQTGTGKTFAF---LLPALIHTHLQTTPISERAGPSVLVMAPTRELA 163
P ++ D++ AQTG+GKT AF ++ L+ L S+ A P L++APTRELA
Sbjct: 52 IPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELA 111
Query: 164 TQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLK 222
QI E K L++ VYGG + Q+ +++ GCH+L+ATPGRL DF+ + I L+
Sbjct: 112 IQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLE 171
Query: 223 AVSFVVLDEADRMLDLGFEPQINK----TSIYINPNRQTVMTSATWNKDVQRVAKKYMVN 278
++VLDEADRMLD+GFEPQI K +++ NRQT+M SAT+ K++Q++A ++ N
Sbjct: 172 FCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYN 231
Query: 279 PVKVNVG 285
+ + VG
Sbjct: 232 YIFMTVG 238
Score = 163 bits (414), Expect = 3e-46
Identities = 96/247 (38%), Positives = 143/247 (57%), Gaps = 17/247 (6%)
Query: 567 KNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQA 626
K + I VSV PD+ N + +F + P I + S+ P+PIQ A
Sbjct: 1 KYDSIPVSV--------TGPDYSATNVIENFDELKLD-PTIRNNILLASYQRPTPIQKNA 51
Query: 627 WPILMSGHDMIGIAQTGTGKTFAF---LLPALIHTHLQTTPISERAGPSVLVMAPTRELA 683
P ++ D++ AQTG+GKT AF ++ L+ L S+ A P L++APTRELA
Sbjct: 52 IPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELA 111
Query: 684 TQIEREVNKID-YKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLK 742
QI E K L++ VYGG + Q+ +++ GCH+L+ATPGRL DF+ + I L+
Sbjct: 112 IQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLE 171
Query: 743 AVSFVVLDEADRMLDLGFEPQINK----TSIYINPNRQTVMTSATWNKDVQRVAKKYMVN 798
++VLDEADRMLD+GFEPQI K +++ NRQT+M SAT+ K++Q++A ++ N
Sbjct: 172 FCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYN 231
Query: 799 PVKVNVG 805
+ + VG
Sbjct: 232 YIFMTVG 238
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 152 bits (385), Expect = 1e-42
Identities = 78/228 (34%), Positives = 112/228 (49%), Gaps = 13/228 (5%)
Query: 60 GQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGI 119
G I+ N V SF +LR + F PS IQ +A + G+D+I
Sbjct: 1 GVIESN----WNEIVDSFDD-MNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQ 55
Query: 120 AQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-L 178
AQ+GTGKT F + L L LV+APTRELA QI++ V +
Sbjct: 56 AQSGTGKTATFAISILQQIELD------LKATQALVLAPTRELAQQIQKVVMALGDYMGA 109
Query: 179 KAVCVYGGKEIEPQLEKIREGC-HILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLD 237
GG + +++K++ HI++ TPGR+ D ++R + K + VLDEAD ML
Sbjct: 110 SCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS 169
Query: 238 LGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVG 285
GF+ QI +N N Q V+ SAT DV V KK+M +P+++ V
Sbjct: 170 RGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVK 217
Score = 151 bits (383), Expect = 2e-42
Identities = 78/228 (34%), Positives = 112/228 (49%), Gaps = 13/228 (5%)
Query: 580 GQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGI 639
G I+ N V SF +LR + F PS IQ +A + G+D+I
Sbjct: 1 GVIESN----WNEIVDSFDD-MNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQ 55
Query: 640 AQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-L 698
AQ+GTGKT F + L L LV+APTRELA QI++ V +
Sbjct: 56 AQSGTGKTATFAISILQQIELD------LKATQALVLAPTRELAQQIQKVVMALGDYMGA 109
Query: 699 KAVCVYGGKELEPQLEKIREGC-HILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLD 757
GG + +++K++ HI++ TPGR+ D ++R + K + VLDEAD ML
Sbjct: 110 SCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS 169
Query: 758 LGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVG 805
GF+ QI +N N Q V+ SAT DV V KK+M +P+++ V
Sbjct: 170 RGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVK 217
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 145 bits (367), Expect = 3e-40
Identities = 72/223 (32%), Positives = 105/223 (47%), Gaps = 11/223 (4%)
Query: 62 IDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQ 121
I N D V F + +LR + F PS IQ +A ++ GHD++ AQ
Sbjct: 1 IQTNYD----KVVYKFDD-MELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQ 55
Query: 122 TGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAV 181
+GTGKT F + + T+ P L++APTRELA QI++ V + + V
Sbjct: 56 SGTGKTGTFSIA--ALQRIDTSV----KAPQALMLAPTRELALQIQKVVMALAFHMDIKV 109
Query: 182 CVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFE 241
G + + I++ TPGR+ D + R + +LDEAD ML GF+
Sbjct: 110 HACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFK 169
Query: 242 PQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNV 284
QI + + P Q V+ SAT DV V K+M NPV++ V
Sbjct: 170 EQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILV 212
Score = 145 bits (367), Expect = 3e-40
Identities = 72/223 (32%), Positives = 105/223 (47%), Gaps = 11/223 (4%)
Query: 582 IDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQ 641
I N D V F + +LR + F PS IQ +A ++ GHD++ AQ
Sbjct: 1 IQTNYD----KVVYKFDD-MELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQ 55
Query: 642 TGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAV 701
+GTGKT F + + T+ P L++APTRELA QI++ V + + V
Sbjct: 56 SGTGKTGTFSIA--ALQRIDTSV----KAPQALMLAPTRELALQIQKVVMALAFHMDIKV 109
Query: 702 CVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFE 761
G + + I++ TPGR+ D + R + +LDEAD ML GF+
Sbjct: 110 HACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFK 169
Query: 762 PQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNV 804
QI + + P Q V+ SAT DV V K+M NPV++ V
Sbjct: 170 EQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILV 212
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 144 bits (363), Expect = 1e-39
Identities = 69/216 (31%), Positives = 113/216 (52%), Gaps = 8/216 (3%)
Query: 71 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 130
+ +F ++LR + F PS IQ +A ++ G D+I +Q+GTGKT F
Sbjct: 13 VDVTPTFDT-MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATF 71
Query: 131 LLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKEI 189
+ L +Q L++APTRELA QI++ + + DY ++ GG +
Sbjct: 72 SISVLQCLDIQVR------ETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNV 125
Query: 190 EPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSI 249
+ K+ G H++ TPGR+ D + R S+ +A+ +VLDEAD ML+ GF+ QI
Sbjct: 126 GEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYR 185
Query: 250 YINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVG 285
Y+ P Q V+ SAT ++ + K+M +P+++ V
Sbjct: 186 YLPPATQVVLISATLPHEILEMTNKFMTDPIRILVK 221
Score = 143 bits (362), Expect = 2e-39
Identities = 69/216 (31%), Positives = 113/216 (52%), Gaps = 8/216 (3%)
Query: 591 PNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAF 650
+ +F ++LR + F PS IQ +A ++ G D+I +Q+GTGKT F
Sbjct: 13 VDVTPTFDT-MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATF 71
Query: 651 LLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGGKEL 709
+ L +Q L++APTRELA QI++ + + DY ++ GG +
Sbjct: 72 SISVLQCLDIQVR------ETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNV 125
Query: 710 EPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSI 769
+ K+ G H++ TPGR+ D + R S+ +A+ +VLDEAD ML+ GF+ QI
Sbjct: 126 GEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYR 185
Query: 770 YINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVG 805
Y+ P Q V+ SAT ++ + K+M +P+++ V
Sbjct: 186 YLPPATQVVLISATLPHEILEMTNKFMTDPIRILVK 221
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 140 bits (354), Expect = 1e-38
Identities = 65/204 (31%), Positives = 106/204 (51%), Gaps = 10/204 (4%)
Query: 85 PEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTP 144
PE+LR + + F PS +Q + P + G D++ A++G GKT F+L L T
Sbjct: 10 PELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTG- 68
Query: 145 ISERAGPSVLVMAPTRELATQIEREVNKI--DYKGLKAVCVYGGKEIEPQLEKI-REGCH 201
SVLVM TRELA QI +E + +K +GG I+ E + + H
Sbjct: 69 -----QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPH 123
Query: 202 ILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLD-LGFEPQINKTSIYINPNRQTVMT 260
I++ TPGR+ S++LK + +LDE D+ML+ L + + +Q +M
Sbjct: 124 IVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMF 183
Query: 261 SATWNKDVQRVAKKYMVNPVKVNV 284
SAT +K+++ V +K+M +P+++ V
Sbjct: 184 SATLSKEIRPVCRKFMQDPMEIFV 207
Score = 139 bits (351), Expect = 3e-38
Identities = 64/204 (31%), Positives = 106/204 (51%), Gaps = 10/204 (4%)
Query: 605 PEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTP 664
PE+LR + + F PS +Q + P + G D++ A++G GKT F+L L T
Sbjct: 10 PELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTG- 68
Query: 665 ISERAGPSVLVMAPTRELATQIEREVNKI--DYKGLKAVCVYGGKELEPQLEKI-REGCH 721
SVLVM TRELA QI +E + +K +GG ++ E + + H
Sbjct: 69 -----QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPH 123
Query: 722 ILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLD-LGFEPQINKTSIYINPNRQTVMT 780
I++ TPGR+ S++LK + +LDE D+ML+ L + + +Q +M
Sbjct: 124 IVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMF 183
Query: 781 SATWNKDVQRVAKKYMVNPVKVNV 804
SAT +K+++ V +K+M +P+++ V
Sbjct: 184 SATLSKEIRPVCRKFMQDPMEIFV 207
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 133 bits (334), Expect = 5e-36
Identities = 58/209 (27%), Positives = 101/209 (48%), Gaps = 5/209 (2%)
Query: 75 TSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPA 134
F+ + E+L + + + PSPIQ ++ PI +SG D++ A+ GTGK+ A+L+P
Sbjct: 3 NEFED-YCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPL 61
Query: 135 LIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLE 194
L L+ I V+V L G K + GG + +
Sbjct: 62 LERLDLKKDNIQ----AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM 117
Query: 195 KIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPN 254
++ + H++IATPGR+ D + + + V +VLDEAD++L F + + + N
Sbjct: 118 RLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKN 177
Query: 255 RQTVMTSATWNKDVQRVAKKYMVNPVKVN 283
RQ ++ SAT+ VQ+ ++ P ++N
Sbjct: 178 RQILLYSATFPLSVQKFMNSHLEKPYEIN 206
Score = 132 bits (333), Expect = 7e-36
Identities = 59/209 (28%), Positives = 101/209 (48%), Gaps = 5/209 (2%)
Query: 595 TSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPA 654
F+ + E+L + + + PSPIQ ++ PI +SG D++ A+ GTGK+ A+L+P
Sbjct: 3 NEFED-YCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPL 61
Query: 655 LIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLE 714
L L+ I V+V L G K + GG L +
Sbjct: 62 LERLDLKKDNIQ----AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM 117
Query: 715 KIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPN 774
++ + H++IATPGR+ D + + + V +VLDEAD++L F + + + N
Sbjct: 118 RLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKN 177
Query: 775 RQTVMTSATWNKDVQRVAKKYMVNPVKVN 803
RQ ++ SAT+ VQ+ ++ P ++N
Sbjct: 178 RQILLYSATFPLSVQKFMNSHLEKPYEIN 206
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 130 bits (328), Expect = 4e-34
Identities = 43/336 (12%), Positives = 92/336 (27%), Gaps = 63/336 (18%)
Query: 109 ILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIER 168
I I G GKT +L + + + G L++APTR +A ++E
Sbjct: 5 IFRKKRLTIMDLHPGAGKTKRYLPAIVRE--------AIKRGLRTLILAPTRVVAAEMEE 56
Query: 169 EVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVV 228
+ + P + G I+ + I + + ++
Sbjct: 57 ALRG-----------LPIRYQTPAIRAEHTGREIVDLMCHATFTMRLLSPIRVPNYNLII 105
Query: 229 LDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLD 288
+DEA + ++ + +AT +
Sbjct: 106 MDEAHFTDPASIAARGYISTRVEMGEAAGIFMTATPPGSRDPFPQSNA------------ 153
Query: 289 LAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRK 348
+ + + E + + + + K + F+ + + +++ L +K
Sbjct: 154 -----PIMDEEREIPERSWNSGH----EWVTDFKGKTVWFVPSIKAGNDIAACLRKNGKK 204
Query: 349 SCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVP---------DLTHVINYDF 399
L + + V TD++ G + + VI D
Sbjct: 205 VIQLSRKTFDSEYIKTRTN----DWDFVVTTDISEMGANFKAERVIDPRRCMKPVILTDG 260
Query: 400 PSHIE----------EYVHRVGRTGRAGKSGESITL 425
+ R GR GR K+ +
Sbjct: 261 EERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYI 296
Score = 120 bits (301), Expect = 2e-30
Identities = 41/325 (12%), Positives = 88/325 (27%), Gaps = 63/325 (19%)
Query: 629 ILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIER 688
I I G GKT +L + + + G L++APTR +A ++E
Sbjct: 5 IFRKKRLTIMDLHPGAGKTKRYLPAIVRE--------AIKRGLRTLILAPTRVVAAEMEE 56
Query: 689 EVNKIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVV 748
+ + P + G I+ + I + + ++
Sbjct: 57 ALRG-----------LPIRYQTPAIRAEHTGREIVDLMCHATFTMRLLSPIRVPNYNLII 105
Query: 749 LDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLD 808
+DEA + ++ + +AT +
Sbjct: 106 MDEAHFTDPASIAARGYISTRVEMGEAAGIFMTATPPGSRDPFPQSNA------------ 153
Query: 809 LAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRK 868
+ + + E + + + + K + F+ + + +++ L +K
Sbjct: 154 -----PIMDEEREIPERSWNSGH----EWVTDFKGKTVWFVPSIKAGNDIAACLRKNGKK 204
Query: 869 SCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVP---------DLTHVINYDF 919
L + + V TD++ G + + VI D
Sbjct: 205 VIQLSRKTFDSEYIKTRTN----DWDFVVTTDISEMGANFKAERVIDPRRCMKPVILTDG 260
Query: 920 PSHIE----------EYVHRVGRTG 934
+ R GR G
Sbjct: 261 EERVILAGPMPVTHSSAAQRRGRVG 285
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 125 bits (315), Expect = 2e-33
Identities = 59/210 (28%), Positives = 102/210 (48%), Gaps = 6/210 (2%)
Query: 76 SFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPAL 135
+F+ F E+L + F PSPIQ +A P+ ++G D++ A+ GTGKT AF++P L
Sbjct: 2 TFED-FYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTL 60
Query: 136 IHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEK 195
+ I ++ + + G+ + GG + + +
Sbjct: 61 EKVKPKLNKIQALI-----MVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR 115
Query: 196 IREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNR 255
+ E HIL+ TPGR+ D SR DL S ++DEAD+ML F+ I + ++ P
Sbjct: 116 LNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTH 175
Query: 256 QTVMTSATWNKDVQRVAKKYMVNPVKVNVG 285
Q+++ SAT+ V+ K++ P ++N+
Sbjct: 176 QSLLFSATFPLTVKEFMVKHLHKPYEINLM 205
Score = 125 bits (314), Expect = 2e-33
Identities = 60/210 (28%), Positives = 102/210 (48%), Gaps = 6/210 (2%)
Query: 596 SFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPAL 655
+F+ F E+L + F PSPIQ +A P+ ++G D++ A+ GTGKT AF++P L
Sbjct: 2 TFED-FYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTL 60
Query: 656 IHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLEK 715
+ I ++ + + G+ + GG L + +
Sbjct: 61 EKVKPKLNKIQALI-----MVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR 115
Query: 716 IREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNR 775
+ E HIL+ TPGR+ D SR DL S ++DEAD+ML F+ I + ++ P
Sbjct: 116 LNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTH 175
Query: 776 QTVMTSATWNKDVQRVAKKYMVNPVKVNVG 805
Q+++ SAT+ V+ K++ P ++N+
Sbjct: 176 QSLLFSATFPLTVKEFMVKHLHKPYEINLM 205
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 121 bits (303), Expect = 2e-31
Identities = 40/225 (17%), Positives = 72/225 (32%), Gaps = 37/225 (16%)
Query: 86 EILRQLENL---SFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQT 142
+L++ P IQ ++ A TG GKT L +L
Sbjct: 28 FLLKEFVEFFRKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALKG- 86
Query: 143 TPISERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGG------KEIEPQLEK 195
V+ PT L Q + K + G+ + G K + +
Sbjct: 87 --------KRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQ 138
Query: 196 IREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLD-----------LGFEPQI 244
I+I T L+ +L F+ +D+ D +L LGF +
Sbjct: 139 NLRNFKIVITTTQFLSKHY----RELGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDL 194
Query: 245 NKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDL 289
S ++++AT K + + ++N ++GS +
Sbjct: 195 KTKSWVGEARGCLMVSTATAKKGKKAELFRQLLN---FDIGSSRI 236
Score = 120 bits (302), Expect = 3e-31
Identities = 40/225 (17%), Positives = 72/225 (32%), Gaps = 37/225 (16%)
Query: 606 EILRQLENL---SFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQT 662
+L++ P IQ ++ A TG GKT L +L
Sbjct: 28 FLLKEFVEFFRKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALKG- 86
Query: 663 TPISERAGPSVLVMAPTRELATQIEREVNKI-DYKGLKAVCVYGG------KELEPQLEK 715
V+ PT L Q + K + G+ + G K + +
Sbjct: 87 --------KRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQ 138
Query: 716 IREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLD-----------LGFEPQI 764
I+I T L+ +L F+ +D+ D +L LGF +
Sbjct: 139 NLRNFKIVITTTQFLSKHY----RELGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDL 194
Query: 765 NKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDL 809
S ++++AT K + + ++N ++GS +
Sbjct: 195 KTKSWVGEARGCLMVSTATAKKGKKAELFRQLLN---FDIGSSRI 236
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 209
Score = 117 bits (294), Expect = 1e-30
Identities = 67/211 (31%), Positives = 112/211 (53%), Gaps = 4/211 (1%)
Query: 75 TSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPA 134
T F + F P I+ ++ L F P+ IQ + P + G M+G +QTGTGKT A+LLP
Sbjct: 1 TQFTR-FPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLP- 58
Query: 135 LIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDY-KGLKAVCVYGGKEIEPQL 193
I ++ +A + ++ + + + + A C+ GG + + L
Sbjct: 59 -IMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL 117
Query: 194 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINP 253
EK+ HI+I TPGR+NDF+ ++D+ +V+DEAD MLD+GF +++ + +
Sbjct: 118 EKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPK 177
Query: 254 NRQTVMTSATWNKDVQRVAKKYMVNPVKVNV 284
+ Q ++ SAT + ++ KKYM NP V+V
Sbjct: 178 DLQMLVFSATIPEKLKPFLKKYMENPTFVHV 208
Score = 117 bits (293), Expect = 2e-30
Identities = 67/211 (31%), Positives = 112/211 (53%), Gaps = 4/211 (1%)
Query: 595 TSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPA 654
T F + F P I+ ++ L F P+ IQ + P + G M+G +QTGTGKT A+LLP
Sbjct: 1 TQFTR-FPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLP- 58
Query: 655 LIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDY-KGLKAVCVYGGKELEPQL 713
I ++ +A + ++ + + + + A C+ GG + + L
Sbjct: 59 -IMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL 117
Query: 714 EKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINP 773
EK+ HI+I TPGR+NDF+ ++D+ +V+DEAD MLD+GF +++ + +
Sbjct: 118 EKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPK 177
Query: 774 NRQTVMTSATWNKDVQRVAKKYMVNPVKVNV 804
+ Q ++ SAT + ++ KKYM NP V+V
Sbjct: 178 DLQMLVFSATIPEKLKPFLKKYMENPTFVHV 208
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 96.1 bits (239), Expect = 3e-22
Identities = 21/132 (15%), Positives = 37/132 (28%), Gaps = 14/132 (10%)
Query: 324 KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREI----------ALEDITSGYA 373
+ ++F K +++ L + + Y L AL +G
Sbjct: 38 RHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDF 97
Query: 374 RICVATDVASRGLDVPDL---THVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKD 430
+ + L + P R GRTGR GK G + +
Sbjct: 98 DSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGR-GKPGIYRFVAPGER 156
Query: 431 WSHAHEIIPILE 442
S + + E
Sbjct: 157 PSGMFDSSVLCE 168
Score = 88.4 bits (219), Expect = 1e-19
Identities = 15/104 (14%), Positives = 27/104 (25%), Gaps = 13/104 (12%)
Query: 844 KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREI----------ALEDITSGYA 893
+ ++F K +++ L + + Y L AL +G
Sbjct: 38 RHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDF 97
Query: 894 RICVATDVASRGLDVPDL---THVINYDFPSHIEEYVHRVGRTG 934
+ + L + P R GRTG
Sbjct: 98 DSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTG 141
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 93.5 bits (231), Expect = 3e-22
Identities = 37/202 (18%), Positives = 70/202 (34%), Gaps = 16/202 (7%)
Query: 85 PEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTP 144
+ L+ P QA+A + SG +++ T GKT + +
Sbjct: 12 SYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKG--- 68
Query: 145 ISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILI 204
L + P R LA + K + GL+ G E + C I++
Sbjct: 69 ------GKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE---HLGDCDIIV 119
Query: 205 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQ---INKTSIYINPNRQTVMTS 261
T + + + + +KAVS +V+DE + + +N + + S
Sbjct: 120 TTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLS 179
Query: 262 ATWNKDVQRVAKKYMVNPVKVN 283
AT +V +A+ + +
Sbjct: 180 ATAP-NVTEIAEWLDADYYVSD 200
Score = 93.1 bits (230), Expect = 4e-22
Identities = 36/202 (17%), Positives = 70/202 (34%), Gaps = 16/202 (7%)
Query: 605 PEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTP 664
+ L+ P QA+A + SG +++ T GKT + +
Sbjct: 12 SYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKG--- 68
Query: 665 ISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREGCHILI 724
L + P R LA + K + GL+ G ++ C I++
Sbjct: 69 ------GKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDY---ESRDEHLGDCDIIV 119
Query: 725 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQ---INKTSIYINPNRQTVMTS 781
T + + + + +KAVS +V+DE + + +N + + S
Sbjct: 120 TTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLS 179
Query: 782 ATWNKDVQRVAKKYMVNPVKVN 803
AT +V +A+ + +
Sbjct: 180 ATAP-NVTEIAEWLDADYYVSD 200
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 92.8 bits (229), Expect = 5e-22
Identities = 30/202 (14%), Positives = 69/202 (34%), Gaps = 21/202 (10%)
Query: 86 EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI 145
++L++ + P Q + ++SG D + + TG GK+ + +PAL+
Sbjct: 15 QVLQET--FGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-------- 64
Query: 146 SERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEIEPQLEKIREGCHILI 204
+V++P L ++ +++E +L
Sbjct: 65 ----NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLY 120
Query: 205 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYI----NPNRQTVMT 260
P RL + + +DEA + G + + ++ P +
Sbjct: 121 IAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMAL 180
Query: 261 SATWNKDVQR--VAKKYMVNPV 280
+AT + ++ V + +P+
Sbjct: 181 TATADDTTRQDIVRLLGLNDPL 202
Score = 92.4 bits (228), Expect = 7e-22
Identities = 31/202 (15%), Positives = 69/202 (34%), Gaps = 21/202 (10%)
Query: 606 EILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPI 665
++L++ + P Q + ++SG D + + TG GK+ + +PAL+
Sbjct: 15 QVLQET--FGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-------- 64
Query: 666 SERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKELEPQLEKIREGCHILI 724
+V++P L ++ ++LE +L
Sbjct: 65 ----NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLY 120
Query: 725 ATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYI----NPNRQTVMT 780
P RL + + +DEA + G + + ++ P +
Sbjct: 121 IAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMAL 180
Query: 781 SATWNKDVQR--VAKKYMVNPV 800
+AT + ++ V + +P+
Sbjct: 181 TATADDTTRQDIVRLLGLNDPL 202
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 88.9 bits (219), Expect = 3e-21
Identities = 52/145 (35%), Positives = 81/145 (55%), Gaps = 3/145 (2%)
Query: 293 HTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSL 352
+ Q + ++E+E+ + L N + +VF K ++S L K+ ++
Sbjct: 2 ANIEQSYVEVNENERFEALCRLLKNKEF---YGLVFCKTKRDTKELASMLRDIGFKAGAI 58
Query: 353 YGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGR 412
+GDLSQ RE + RI +ATDV SRG+DV DL VINY P + E Y+HR+GR
Sbjct: 59 HGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGR 118
Query: 413 TGRAGKSGESITLMTRKDWSHAHEI 437
TGRAGK G++I+++ R+++ I
Sbjct: 119 TGRAGKKGKAISIINRREYKKLRYI 143
Score = 68.8 bits (167), Expect = 3e-14
Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 3/124 (2%)
Query: 813 HTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSL 872
+ Q + ++E+E+ + L N + +VF K ++S L K+ ++
Sbjct: 2 ANIEQSYVEVNENERFEALCRLLKNKEF---YGLVFCKTKRDTKELASMLRDIGFKAGAI 58
Query: 873 YGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGR 932
+GDLSQ RE + RI +ATDV SRG+DV DL VINY P + E Y+HR+GR
Sbjct: 59 HGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGR 118
Query: 933 TGEF 936
TG
Sbjct: 119 TGRA 122
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 91.1 bits (225), Expect = 1e-20
Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 11/142 (7%)
Query: 304 EDEKKDWLMEFFDNM--DEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDR 361
+ K D L E ++ K++VF + + + ++L K+ G S+E+
Sbjct: 141 DHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKEND 200
Query: 362 --------EIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRT 413
++ L++ G + VAT V GLDVP++ V+ Y+ + R GRT
Sbjct: 201 RGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRT 260
Query: 414 GRAGKSGESITLMTRKDWSHAH 435
GR G I LM + A+
Sbjct: 261 GRHMP-GRVIILMAKGTRDEAY 281
Score = 78.8 bits (193), Expect = 2e-16
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 10/121 (8%)
Query: 824 EDEKKDWLMEFFDNM--DEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDR 881
+ K D L E ++ K++VF + + + ++L K+ G S+E+
Sbjct: 141 DHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKEND 200
Query: 882 --------EIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRT 933
++ L++ G + VAT V GLDVP++ V+ Y+ + R GRT
Sbjct: 201 RGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRT 260
Query: 934 G 934
G
Sbjct: 261 G 261
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 86.9 bits (214), Expect = 5e-20
Identities = 27/131 (20%), Positives = 47/131 (35%), Gaps = 7/131 (5%)
Query: 297 QKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDL 356
+ I + K L E + +++ + + ++
Sbjct: 70 ARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELV-------YRISKVFLIPAITHRT 122
Query: 357 SQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRA 416
S+E+RE LE +G R V++ V G+DVPD + EY+ R+GR R
Sbjct: 123 SREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRP 182
Query: 417 GKSGESITLMT 427
K + L
Sbjct: 183 SKGKKEAVLYE 193
Score = 74.9 bits (183), Expect = 8e-16
Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 7/118 (5%)
Query: 817 QKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDL 876
+ I + K L E + +++ + + ++
Sbjct: 70 ARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELV-------YRISKVFLIPAITHRT 122
Query: 877 SQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
S+E+RE LE +G R V++ V G+DVPD + EY+ R+GR
Sbjct: 123 SREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRIL 180
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 86.4 bits (213), Expect = 2e-19
Identities = 29/272 (10%), Positives = 76/272 (27%), Gaps = 35/272 (12%)
Query: 301 ILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQED 360
+ DE L +++ +++ + L ++ +
Sbjct: 7 VAVNDESISTLSSI---LEKLGTGGIIYARTGEEAEEIYESLKNKF------RIGIVTAT 57
Query: 361 REIALEDITSGYARICVAT----DVASRGLDVPD-LTHVINYDFPSHIEEYVHRVGRTGR 415
++ E G + T RGLD+P+ + + P + +
Sbjct: 58 KKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP----SFRVTIEDIDS 113
Query: 416 AGKSGESITLMTRKDWSHAHEIIPILEEGGHESYMIWRRDSRIALHVILEGGEEVVEEEE 475
+ ++ ++P +E E I ++ + ++VV E
Sbjct: 114 LSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKK----VMGKERPQAKDVVVREG 169
Query: 476 GGEDGMEILVGVDLEVVMEGEEEGEVAIQMINKIDLGRHIDPEPTMEELMALSDRKERDK 535
E++ + + + K D + +
Sbjct: 170 ------EVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAF-----IERAKL 218
Query: 536 WAREPKIIKNVYKEDPEVANMTPEQVEAFRKK 567
+ E K I V + +++ E + +R++
Sbjct: 219 YDIEFKSIDEV--DFEKLSRELDESRDRYRRR 248
Score = 67.9 bits (165), Expect = 4e-13
Identities = 13/119 (10%), Positives = 33/119 (27%), Gaps = 18/119 (15%)
Query: 821 ILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQED 880
+ DE L +++ +++ + L ++ +
Sbjct: 7 VAVNDESISTLSSI---LEKLGTGGIIYARTGEEAEEIYESLKNKF------RIGIVTAT 57
Query: 881 REIALEDITSGYARICVAT----DVASRGLDVPD-LTHVINYDFPSHIEEYVHRVGRTG 934
++ E G + T RGLD+P+ + + P + +
Sbjct: 58 KKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP----SFRVTIEDID 112
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 81.5 bits (200), Expect = 1e-18
Identities = 44/150 (29%), Positives = 86/150 (57%), Gaps = 3/150 (2%)
Query: 295 VTQKIIILDEDEKK-DWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLY 353
+ Q + ++E+E K + L + +D++ + ++F + V +++ L ++Y
Sbjct: 1 IKQFYVNVEEEEYKYECLTDLYDSISVT--QAVIFCNTRRKVEELTTKLRNDKFTVSAIY 58
Query: 354 GDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRT 413
DL Q++R+ +++ SG +RI ++TD+ +RG+DV ++ VINYD P++ E Y+HR+GR
Sbjct: 59 SDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRG 118
Query: 414 GRAGKSGESITLMTRKDWSHAHEIIPILEE 443
GR G+ G +I +T +D E+
Sbjct: 119 GRFGRKGVAINFVTNEDVGAMRELEKFYST 148
Score = 63.4 bits (153), Expect = 3e-12
Identities = 38/123 (30%), Positives = 75/123 (60%), Gaps = 3/123 (2%)
Query: 815 VTQKIIILDEDEKK-DWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLY 873
+ Q + ++E+E K + L + +D++ + ++F + V +++ L ++Y
Sbjct: 1 IKQFYVNVEEEEYKYECLTDLYDSISVT--QAVIFCNTRRKVEELTTKLRNDKFTVSAIY 58
Query: 874 GDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRT 933
DL Q++R+ +++ SG +RI ++TD+ +RG+DV ++ VINYD P++ E Y+HR+GR
Sbjct: 59 SDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRG 118
Query: 934 GEF 936
G F
Sbjct: 119 GRF 121
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 78.1 bits (191), Expect = 3e-17
Identities = 45/146 (30%), Positives = 84/146 (57%), Gaps = 3/146 (2%)
Query: 293 HTVTQKIIILDEDEKK-DWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCS 351
+ Q + ++ +E K D L + +D + + ++F K V ++ + S
Sbjct: 6 EGIKQFFVAVEREEWKFDTLCDLYDTLTIT--QAVIFCNTKRKVDWLTEKMREANFTVSS 63
Query: 352 LYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVG 411
++GD+ Q++RE +++ SG +R+ ++TDV +RGLDVP ++ +INYD P++ E Y+HR+G
Sbjct: 64 MHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIG 123
Query: 412 RTGRAGKSGESITLMTRKDWSHAHEI 437
R+GR G+ G +I + D +I
Sbjct: 124 RSGRYGRKGVAINFVKNDDIRILRDI 149
Score = 61.1 bits (147), Expect = 2e-11
Identities = 39/125 (31%), Positives = 75/125 (60%), Gaps = 3/125 (2%)
Query: 813 HTVTQKIIILDEDEKK-DWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCS 871
+ Q + ++ +E K D L + +D + + ++F K V ++ + S
Sbjct: 6 EGIKQFFVAVEREEWKFDTLCDLYDTLTIT--QAVIFCNTKRKVDWLTEKMREANFTVSS 63
Query: 872 LYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVG 931
++GD+ Q++RE +++ SG +R+ ++TDV +RGLDVP ++ +INYD P++ E Y+HR+G
Sbjct: 64 MHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIG 123
Query: 932 RTGEF 936
R+G +
Sbjct: 124 RSGRY 128
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia
coli [TaxId: 562]}
Length = 200
Score = 72.8 bits (177), Expect = 4e-15
Identities = 30/163 (18%), Positives = 68/163 (41%), Gaps = 2/163 (1%)
Query: 298 KIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLS 357
+ +++++ + D LM + ++ +++ +A V ++ L + + + + L
Sbjct: 8 RYMLMEKFKPLDQLMRYVQ--EQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLE 65
Query: 358 QEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAG 417
R E +I VAT G++ P++ V+++D P +IE Y GR GR G
Sbjct: 66 NNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDG 125
Query: 418 KSGESITLMTRKDWSHAHEIIPILEEGGHESYMIWRRDSRIAL 460
E++ D + + +G + + ++ A
Sbjct: 126 LPAEAMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLNAMGAF 168
Score = 63.1 bits (152), Expect = 9e-12
Identities = 24/119 (20%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 818 KIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLS 877
+ +++++ + D LM + ++ +++ +A V ++ L + + + + L
Sbjct: 8 RYMLMEKFKPLDQLMRYVQ--EQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLE 65
Query: 878 QEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF 936
R E +I VAT G++ P++ V+++D P +IE Y GR G
Sbjct: 66 NNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRD 124
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 171
Score = 70.1 bits (170), Expect = 2e-14
Identities = 37/145 (25%), Positives = 70/145 (48%), Gaps = 2/145 (1%)
Query: 293 HTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSL 352
+TQ ++E +K L F + + ++ ++F V ++ +
Sbjct: 5 KGITQYYAFVEERQKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYS 62
Query: 353 YGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGR 412
+ + Q++R + G R V +D+ +RG+D+ + VIN+DFP E Y+HR+GR
Sbjct: 63 HARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGR 122
Query: 413 TGRAGKSGESITLMTRKDWSHAHEI 437
+GR G G +I L+ D + ++I
Sbjct: 123 SGRFGHLGLAINLINWNDRFNLYKI 147
Score = 49.3 bits (116), Expect = 3e-07
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 2/124 (1%)
Query: 813 HTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSL 872
+TQ ++E +K L F + + ++ ++F V ++ +
Sbjct: 5 KGITQYYAFVEERQKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYS 62
Query: 873 YGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGR 932
+ + Q++R + G R V +D+ +RG+D+ + VIN+DFP E Y+HR+GR
Sbjct: 63 HARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGR 122
Query: 933 TGEF 936
+G F
Sbjct: 123 SGRF 126
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25
{Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 68.5 bits (166), Expect = 7e-14
Identities = 34/152 (22%), Positives = 73/152 (48%), Gaps = 9/152 (5%)
Query: 293 HTVTQKIIILDEDEKK-DWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCS 351
+ + Q ++ + + K L + ++ + ++F + + ++ ++ +
Sbjct: 4 NNIRQYYVLCEHRKDKYQALCNIYGSITIG--QAIIFCQTRRNAKWLTVEMIQDGHQVSL 61
Query: 352 LYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSH------IEE 405
L G+L+ E R ++ G ++ + T+V +RG+DV +T V+N+D P E
Sbjct: 62 LSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYET 121
Query: 406 YVHRVGRTGRAGKSGESITLMTRKDWSHAHEI 437
Y+HR+GRTGR GK G + ++ + +I
Sbjct: 122 YLHRIGRTGRFGKKGLAFNMIEVDELPSLMKI 153
Score = 48.5 bits (114), Expect = 5e-07
Identities = 30/131 (22%), Positives = 64/131 (48%), Gaps = 9/131 (6%)
Query: 813 HTVTQKIIILDEDEKK-DWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCS 871
+ + Q ++ + + K L + ++ + ++F + + ++ ++ +
Sbjct: 4 NNIRQYYVLCEHRKDKYQALCNIYGSITIG--QAIIFCQTRRNAKWLTVEMIQDGHQVSL 61
Query: 872 LYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSH------IEE 925
L G+L+ E R ++ G ++ + T+V +RG+DV +T V+N+D P E
Sbjct: 62 LSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYET 121
Query: 926 YVHRVGRTGEF 936
Y+HR+GRTG F
Sbjct: 122 YLHRIGRTGRF 132
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme
UvrB {Bacillus caldotenax [TaxId: 1395]}
Length = 181
Score = 66.0 bits (160), Expect = 7e-13
Identities = 20/120 (16%), Positives = 41/120 (34%)
Query: 298 KIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLS 357
I + + D L+ E ++ +V K ++ L K L+ ++
Sbjct: 7 TIDVRPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIK 66
Query: 358 QEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAG 417
+R + D+ G + V ++ GLD+P+++ V D R
Sbjct: 67 TLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGR 126
Score = 63.3 bits (153), Expect = 5e-12
Identities = 20/116 (17%), Positives = 41/116 (35%)
Query: 818 KIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLS 877
I + + D L+ E ++ +V K ++ L K L+ ++
Sbjct: 7 TIDVRPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIK 66
Query: 878 QEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRT 933
+R + D+ G + V ++ GLD+P+++ V D R
Sbjct: 67 TLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQ 122
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 64.0 bits (155), Expect = 1e-12
Identities = 21/134 (15%), Positives = 40/134 (29%), Gaps = 12/134 (8%)
Query: 300 IILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQE 359
+ L + + + + + ++F K +++ L + + Y L
Sbjct: 13 VALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVS 72
Query: 360 DREIALEDITSGYARICVATDVASRGLDVPD---LTHVINYDFPSHIEEYVHRVGRTGRA 416
+ + VATD G + + P R GRTGR
Sbjct: 73 VI-------PTNGDVVVVATDALMTGFTGDFDSVIDCNTSDGKPQDAVSRTQRRGRTGR- 124
Query: 417 GKSGESITLMTRKD 430
GK G + +
Sbjct: 125 GKPG-IYRFVAPGE 137
Score = 57.8 bits (139), Expect = 2e-10
Identities = 17/118 (14%), Positives = 34/118 (28%), Gaps = 10/118 (8%)
Query: 820 IILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQE 879
+ L + + + + + ++F K +++ L + + Y L
Sbjct: 13 VALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVS 72
Query: 880 DREIALEDITSGYARICVATDVASRGLDVPD---LTHVINYDFPSHIEEYVHRVGRTG 934
+ + VATD G + + P R GRTG
Sbjct: 73 VI-------PTNGDVVVVATDALMTGFTGDFDSVIDCNTSDGKPQDAVSRTQRRGRTG 123
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 63.3 bits (152), Expect = 8e-12
Identities = 33/181 (18%), Positives = 67/181 (37%), Gaps = 9/181 (4%)
Query: 96 FTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLV 155
P Q + + + + TG GKT ++ A + G VL+
Sbjct: 7 LIQPRIYQEVIYAKCK-ETNCLIVLPTGLGKTLIAMMIAEYRLT--------KYGGKVLM 57
Query: 156 MAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVS 215
+APT+ L Q ++ + + G++ + K +++ATP + + +
Sbjct: 58 LAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLL 117
Query: 216 RASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKY 275
I L+ VS +V DEA R + I + N + +A+ +++ +
Sbjct: 118 AGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVI 177
Query: 276 M 276
Sbjct: 178 N 178
Score = 62.9 bits (151), Expect = 1e-11
Identities = 33/181 (18%), Positives = 67/181 (37%), Gaps = 9/181 (4%)
Query: 616 FTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLV 675
P Q + + + + TG GKT ++ A + G VL+
Sbjct: 7 LIQPRIYQEVIYAKCK-ETNCLIVLPTGLGKTLIAMMIAEYRLT--------KYGGKVLM 57
Query: 676 MAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVS 735
+APT+ L Q ++ + + G++ + K +++ATP + + +
Sbjct: 58 LAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLL 117
Query: 736 RASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKY 795
I L+ VS +V DEA R + I + N + +A+ +++ +
Sbjct: 118 AGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVI 177
Query: 796 M 796
Sbjct: 178 N 178
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 58.9 bits (141), Expect = 1e-10
Identities = 38/144 (26%), Positives = 71/144 (49%), Gaps = 2/144 (1%)
Query: 295 VTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYG 354
+ Q + L ++EK L + D E ++V++F+ A++ L Q + +++
Sbjct: 2 LQQYYVKLKDNEKNRKLFDLLDV--LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHR 59
Query: 355 DLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 414
+ QE+R + RI VAT++ RG+D+ + NYD P + Y+HRV R G
Sbjct: 60 GMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAG 119
Query: 415 RAGKSGESITLMTRKDWSHAHEII 438
R G G +IT ++ ++ + +
Sbjct: 120 RFGTKGLAITFVSDENDAKILNDV 143
Score = 43.1 bits (100), Expect = 3e-05
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Query: 815 VTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYG 874
+ Q + L ++EK L + D E ++V++F+ A++ L Q + +++
Sbjct: 2 LQQYYVKLKDNEKNRKLFDLLDV--LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHR 59
Query: 875 DLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTG 934
+ QE+R + RI VAT++ RG+D+ + NYD P + Y+HRV R G
Sbjct: 60 GMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAG 119
Query: 935 EF 936
F
Sbjct: 120 RF 121
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 55.3 bits (132), Expect = 4e-09
Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 10/116 (8%)
Query: 331 RKASVSAMSSDLACQYRKSCSL-YGDLSQEDREIALEDITSGYARICVATDVASRGLDVP 389
+ + MS LA RK + + L R + + G ++ VAT + G+++P
Sbjct: 78 LEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLP 137
Query: 390 DLTHVI-------NYDFPSHIEEYVHRVGRTGRAGK--SGESITLMTRKDWSHAHE 436
++ Y + EY GR GR G GE+I ++ ++D A +
Sbjct: 138 ARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVK 193
Score = 42.6 bits (99), Expect = 7e-05
Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 8/92 (8%)
Query: 851 RKASVSAMSSDLACQYRKSCSL-YGDLSQEDREIALEDITSGYARICVATDVASRGLDVP 909
+ + MS LA RK + + L R + + G ++ VAT + G+++P
Sbjct: 78 LEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLP 137
Query: 910 DLTHVI-------NYDFPSHIEEYVHRVGRTG 934
++ Y + EY GR G
Sbjct: 138 ARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAG 169
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 36.5 bits (84), Expect = 0.010
Identities = 12/99 (12%), Positives = 30/99 (30%), Gaps = 5/99 (5%)
Query: 313 EFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGY 372
D + ++ F+ + + M++ L + L + + I
Sbjct: 27 TGHDWILADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYP----TIKQKK 82
Query: 373 ARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVG 411
+ATD+A G ++ + V++
Sbjct: 83 PDFILATDIAEMGANL-CVERVLDCRTAFKPVLVDEGRK 120
Score = 36.5 bits (84), Expect = 0.010
Identities = 12/99 (12%), Positives = 30/99 (30%), Gaps = 5/99 (5%)
Query: 833 EFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGY 892
D + ++ F+ + + M++ L + L + + I
Sbjct: 27 TGHDWILADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYP----TIKQKK 82
Query: 893 ARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVG 931
+ATD+A G ++ + V++
Sbjct: 83 PDFILATDIAEMGANL-CVERVLDCRTAFKPVLVDEGRK 120
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA,
nucleotide-binding domains {Bacillus subtilis [TaxId:
1423]}
Length = 175
Score = 33.3 bits (76), Expect = 0.061
Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 10/139 (7%)
Query: 300 IILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQE 359
I + K + E V+V + +S L + L +
Sbjct: 12 IYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHER 71
Query: 360 DREIALEDITSGYARICVATDVASRGLDV--------PDLTHVINYDFPSHIEEYVHRVG 411
+ +I E G + +AT++A RG D+ V+ + G
Sbjct: 72 EAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRG 129
Query: 412 RTGRAGKSGESITLMTRKD 430
R+GR G G + ++ +D
Sbjct: 130 RSGRQGDPGITQFYLSMED 148
Score = 28.7 bits (64), Expect = 2.2
Identities = 21/123 (17%), Positives = 38/123 (30%), Gaps = 10/123 (8%)
Query: 820 IILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQE 879
I + K + E V+V + +S L + L +
Sbjct: 12 IYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHER 71
Query: 880 DREIALEDITSGYARICVATDVASRGLDV--------PDLTHVINYDFPSHIEEYVHRVG 931
+ +I E G + +AT++A RG D+ V+ + G
Sbjct: 72 EAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRG 129
Query: 932 RTG 934
R+G
Sbjct: 130 RSG 132
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 346
Score = 34.2 bits (77), Expect = 0.067
Identities = 28/224 (12%), Positives = 71/224 (31%), Gaps = 21/224 (9%)
Query: 307 KKDWLMEFFDNMDEER-DKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIAL 365
K L DKV++ ++ + L G +S + R +
Sbjct: 102 KMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIV 161
Query: 366 EDITSGY---ARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGES 422
E + +++ GL++ ++ +D + + R R G
Sbjct: 162 ERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDG----- 216
Query: 423 ITLMTRKDWSHAHEIIPILEEGGHESYMIWRRDSRIAL-HVILEGGEEVVEEEEGGEDGM 481
+K + + ++ G E ++ R+ + AL +++ ++V E +
Sbjct: 217 -----QKKTCYIYRLLS---TGTIEEKILQRQAHKKALSSCVVDEEQDV--ERHFSLGEL 266
Query: 482 EILVGVDLEVVMEGEEEGEVAIQMINKIDLGRHIDPEPTMEELM 525
L ++ + + + + + N + D +L
Sbjct: 267 RELFSLNEKTLSDTHDRFRCRRCV-NGRQVRPPPDDSDCTCDLS 309
Score = 28.0 bits (61), Expect = 5.5
Identities = 14/111 (12%), Positives = 33/111 (29%), Gaps = 4/111 (3%)
Query: 827 KKDWLMEFFDNMDEER-DKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIAL 885
K L DKV++ ++ + L G +S + R +
Sbjct: 102 KMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIV 161
Query: 886 EDITSGY---ARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRT 933
E + +++ GL++ ++ +D + + R
Sbjct: 162 ERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARV 212
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 31.2 bits (69), Expect = 0.24
Identities = 27/155 (17%), Positives = 50/155 (32%), Gaps = 19/155 (12%)
Query: 109 ILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIER 168
+L G + G GKT FL L + LV+APTR + ++++
Sbjct: 3 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR--------RLRTLVLAPTRVVLSEMKE 54
Query: 169 EVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVV 228
+ +D K G E + P R+ ++ ++
Sbjct: 55 AFHGLDVKFHTQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNW-----------EVII 103
Query: 229 LDEADRMLDLGFEPQINKTSIYINPNRQTVMTSAT 263
+DEA + + T++ +AT
Sbjct: 104 MDEAHFLDPASIAARGWAAHRARANESATILMTAT 138
Score = 30.8 bits (68), Expect = 0.32
Identities = 27/155 (17%), Positives = 50/155 (32%), Gaps = 19/155 (12%)
Query: 629 ILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIER 688
+L G + G GKT FL L + LV+APTR + ++++
Sbjct: 3 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR--------RLRTLVLAPTRVVLSEMKE 54
Query: 689 EVNKIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVV 748
+ +D K G E + P R+ ++ ++
Sbjct: 55 AFHGLDVKFHTQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNW-----------EVII 103
Query: 749 LDEADRMLDLGFEPQINKTSIYINPNRQTVMTSAT 783
+DEA + + T++ +AT
Sbjct: 104 MDEAHFLDPASIAARGWAAHRARANESATILMTAT 138
>d2de6a2 d.129.3.3 (A:143-384) Terminal oxygenase component of
carbazole CarAa {Janthinobacterium sp. j3 [TaxId:
213804]}
Length = 242
Score = 27.5 bits (61), Expect = 7.4
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 451 IWRRDSRIAL---HVILEGGEE---VVEEEEGGEDGMEILVGVDLEVVMEGEEEGEVAIQ 504
I +D+ +AL ++ VV+++ G G+ L+G V EG GEV +
Sbjct: 49 ILVKDNDLALPLGFAPGGDRKQQTRVVDDDVVGRKGVYDLIGEHGVPVFEGTIGGEVVRE 108
>d3thia_ c.94.1.1 (A:) Thiaminase I {Paenibacillus thiaminolyticus
[TaxId: 49283]}
Length = 362
Score = 27.7 bits (60), Expect = 7.5
Identities = 6/52 (11%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 26 VYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDG---QIDENPD-FQIPNP 73
+Y P+ A ++ ++++ + + D ++ D F + +
Sbjct: 7 IYPYVPDPARFQAAVLDQWQRQEPGVKLEFTDWDSYSADPPDDLDVFVLDSI 58
Score = 27.7 bits (60), Expect = 7.5
Identities = 6/52 (11%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 546 VYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDG---QIDENPD-FQIPNP 593
+Y P+ A ++ ++++ + + D ++ D F + +
Sbjct: 7 IYPYVPDPARFQAAVLDQWQRQEPGVKLEFTDWDSYSADPPDDLDVFVLDSI 58
>d2bt6a1 d.15.4.1 (A:5-108) Adrenodoxin {Cow (Bos taurus) [TaxId:
9913]}
Length = 104
Score = 26.1 bits (57), Expect = 7.5
Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 2/84 (2%)
Query: 457 RIALHVILEGGEEVVEEEEGGEDGMEILV--GVDLEVVMEGEEEGEVAIQMINKIDLGRH 514
+I +H I GE + + + G+ ++++V +D++ E + +
Sbjct: 2 KITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFE 61
Query: 515 IDPEPTMEELMALSDRKERDKWAR 538
T EE L +R
Sbjct: 62 KLEAITDEENDMLDLAYGLTDRSR 85
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 27.6 bits (60), Expect = 8.1
Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 14/62 (22%)
Query: 114 HDMIGIAQTGTGKTFAF--LLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVN 171
H ++ TGTGK+ L + G ++++ P ++ ++ R+ +
Sbjct: 52 HLLV-NGATGTGKSVLLRELAYTGL-----------LRGDRMVIVDPNGDMLSKFGRDKD 99
Query: 172 KI 173
I
Sbjct: 100 II 101
Score = 27.6 bits (60), Expect = 8.1
Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 14/62 (22%)
Query: 634 HDMIGIAQTGTGKTFAF--LLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVN 691
H ++ TGTGK+ L + G ++++ P ++ ++ R+ +
Sbjct: 52 HLLV-NGATGTGKSVLLRELAYTGL-----------LRGDRMVIVDPNGDMLSKFGRDKD 99
Query: 692 KI 693
I
Sbjct: 100 II 101
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 206
Score = 27.1 bits (59), Expect = 8.9
Identities = 19/138 (13%), Positives = 34/138 (24%), Gaps = 26/138 (18%)
Query: 98 TPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMA 157
+ Q +A + + TG+GKT + L++
Sbjct: 70 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAA------------INELSTPTLIVV 117
Query: 158 PTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRA 217
PT LA Q + + E E + T + A
Sbjct: 118 PTLALAEQWKERLGIFGE--------------EYVGEFSGRIKELKPLTVSTYDSAYVNA 163
Query: 218 SIDLKAVSFVVLDEADRM 235
++ DE +
Sbjct: 164 EKLGNRFMLLIFDEVHHL 181
Score = 27.1 bits (59), Expect = 8.9
Identities = 19/138 (13%), Positives = 34/138 (24%), Gaps = 26/138 (18%)
Query: 618 TPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMA 677
+ Q +A + + TG+GKT + L++
Sbjct: 70 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAA------------INELSTPTLIVV 117
Query: 678 PTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRA 737
PT LA Q + + E E + T + A
Sbjct: 118 PTLALAEQWKERLGIFGE--------------EYVGEFSGRIKELKPLTVSTYDSAYVNA 163
Query: 738 SIDLKAVSFVVLDEADRM 755
++ DE +
Sbjct: 164 EKLGNRFMLLIFDEVHHL 181
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.386
Gapped
Lambda K H
0.267 0.0405 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,561,039
Number of extensions: 177999
Number of successful extensions: 743
Number of sequences better than 10.0: 1
Number of HSP's gapped: 678
Number of HSP's successfully gapped: 79
Length of query: 936
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 842
Effective length of database: 1,116,976
Effective search space: 940493792
Effective search space used: 940493792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)