BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7558
(508 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Length = 493
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 143/290 (49%), Gaps = 44/290 (15%)
Query: 68 ESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALE 127
+ AT A+ +R+ I+ E+++A I ++ VNP +NA++ + +A E+
Sbjct: 8 QDATAQAELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRES---------- 57
Query: 128 EDISDKPYLGVPFTSKESTAC-KGLSNTLGL--LARKGKKADADAYIVERVKTAGGILLG 184
+++ P+ GVP+ K+ T +G NT + + G +AD DAY V+R++ AG +LLG
Sbjct: 58 -ELASGPFAGVPYLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLG 116
Query: 185 NTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNR 243
TN PE+ + +G + NP+NL R+ G SSGG V+A S + G D GS R
Sbjct: 117 KTNTPEMGNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGSVR 176
Query: 244 IPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKL 303
IPA CGV G K T G ++ GP+V ++++ + +
Sbjct: 177 IPASVCGVVGLKPTRGRISP-----------------GPLVTDSDNVAGAAHEGL----- 214
Query: 304 PAYNFDKSV-DLAK-LKVFYVEEPGDMKVSPM-SKDMIQAIRKCVNALKV 350
F +SV D+A L V PGD +P S+ Q I + +L+V
Sbjct: 215 ----FARSVRDIAALLDVVSGHRPGDTFCAPTASRPYAQGISENPGSLRV 260
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 480 FNILDFPVTNVPVGLDGKGLPLGVQVIAS 508
FN+ P ++P+G+ G+P+GVQ++A+
Sbjct: 428 FNVSGQPAISLPIGMSSDGMPIGVQIVAA 456
>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Complexed With Substrate
Length = 493
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 143/290 (49%), Gaps = 44/290 (15%)
Query: 68 ESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALE 127
+ AT A+ +R+ I+ E+++A I ++ VNP +NA++ + +A E+
Sbjct: 8 QDATAQAELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRES---------- 57
Query: 128 EDISDKPYLGVPFTSKESTAC-KGLSNTLGL--LARKGKKADADAYIVERVKTAGGILLG 184
+++ P+ GVP+ K+ T +G NT + + G +AD DAY V+R++ AG +LLG
Sbjct: 58 -ELASGPFAGVPYLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLG 116
Query: 185 NTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNR 243
TN PE+ + +G + NP+NL R+ G SSGG V+A S + G D G+ R
Sbjct: 117 KTNTPEMGNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGAVR 176
Query: 244 IPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKL 303
IPA CGV G K T G ++ GP+V ++++ + +
Sbjct: 177 IPASVCGVVGLKPTRGRISP-----------------GPLVTDSDNVAGAAHEGL----- 214
Query: 304 PAYNFDKSV-DLAK-LKVFYVEEPGDMKVSPM-SKDMIQAIRKCVNALKV 350
F +SV D+A L V PGD +P S+ Q I + +L+V
Sbjct: 215 ----FARSVRDIAALLDVVSGHRPGDTFCAPTASRPYAQGISENPGSLRV 260
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 480 FNILDFPVTNVPVGLDGKGLPLGVQVIAS 508
FN+ P ++P+G+ G+P+GVQ++A+
Sbjct: 428 FNVSGQPAISLPIGMSSDGMPIGVQIVAA 456
>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
Length = 478
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 107/200 (53%), Gaps = 9/200 (4%)
Query: 68 ESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALE 127
+S +++ + ++ ++ EVV++F +R Q + A + Y +AL++A++ ++
Sbjct: 5 KSLSELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLKER---- 60
Query: 128 EDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTN 187
+ P G+P K++ +G T + A DA ++ER+K AG +++G TN
Sbjct: 61 ----ELPLFGIPIAVKDNILVEGEKTTCASKILENFVAPYDATVIERLKKAGALIVGKTN 116
Query: 188 IPEL-LWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPA 246
+ E + S + + + NP++L R G SSGG A V+ + + LG+D GGS R PA
Sbjct: 117 LDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVSLGSDTGGSIRQPA 176
Query: 247 LYCGVYGHKLTTGSVNSRGI 266
+CGV G K T G V+ G+
Sbjct: 177 SFCGVIGIKPTYGRVSRYGL 196
>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome
pdb|3KFU|H Chain H, Crystal Structure Of The Transamidosome
Length = 471
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 120/241 (49%), Gaps = 15/241 (6%)
Query: 70 ATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEED 129
A +I ++ ++ +EV QA+++R+++++P L A + LEEA+A D +
Sbjct: 3 AHEIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLN-ERLLEEAEAVDPGL----- 56
Query: 130 ISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIP 189
P G+ K++ A +GL T G + +A V R+K G ++LG TN+
Sbjct: 57 ----PLAGLVVAVKDNIATRGLRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLD 112
Query: 190 EL-LWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALY 248
E + S + + + + NP++ R G SSGG A ++A + L LG+D GGS R PA +
Sbjct: 113 EFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQPAAF 172
Query: 249 CGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPAYNF 308
CGVYG K T G V+ G+ S+ GP+ + DL PD L A +
Sbjct: 173 CGVYGLKPTYGRVSRFGLIAY----ASSLDQIGPMARSVRDLALLMDAAAGPDPLDATSL 228
Query: 309 D 309
D
Sbjct: 229 D 229
>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M21|B Chain B, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M22|A Chain A, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
pdb|1M22|B Chain B, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
Length = 503
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 105/205 (51%), Gaps = 17/205 (8%)
Query: 73 IAKKIRNKNITSVEVVQAFIERI---EQVNPYLNAMVDTRYTEALEEAKAADQKIALEED 129
+ ++ + S + QA+++RI ++ P L A+++ +AL+EA A++ +
Sbjct: 16 LQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELN-PDALKEA--AERDRERRDG 72
Query: 130 ISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIP 189
P G+P K++ ++ + G LA +G + D DAY+V R++ AG ++LG TN+
Sbjct: 73 RLRGPLHGIPLLLKDNINAAPMATSAGSLALQGFRPD-DAYLVRRLRDAGAVVLGKTNLS 131
Query: 190 ELLWSESR--------NMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGS 241
E W+ R + GQ+ NPY + + SS G A V+A + + +GT+ GS
Sbjct: 132 E--WANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAIGTETDGS 189
Query: 242 NRIPALYCGVYGHKLTTGSVNSRGI 266
PA GV G K T G V+ GI
Sbjct: 190 IVCPAAINGVVGLKPTVGLVSRDGI 214
>pdb|2WAP|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
pdb|2WAP|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
Length = 543
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 92/153 (60%), Gaps = 1/153 (0%)
Query: 137 GVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELLWS-E 195
GVP + KE + KG +TLGL +G +++D +V+ +K G + +TN+P+ ++S +
Sbjct: 106 GVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYD 165
Query: 196 SRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHK 255
N ++GQ+ NP+ ++ G SSGGE L+ + GS LGLGTD+GGS R P+ +CG+ G K
Sbjct: 166 CSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLK 225
Query: 256 LTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAE 288
T ++ G+ G + L+ GP+ + E
Sbjct: 226 PTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVE 258
>pdb|2WJ1|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ1|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|3K7F|A Chain A, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K7F|B Chain B, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K83|A Chain A, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K83|B Chain B, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|A Chain A, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|B Chain B, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3LJ6|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ6|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ7|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3LJ7|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3OJ8|A Chain A, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3OJ8|B Chain B, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3PPM|A Chain A, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PPM|B Chain B, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|A Chain A, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|B Chain B, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
Length = 573
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 122/254 (48%), Gaps = 33/254 (12%)
Query: 68 ESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLN------------------------ 103
+ A A + R K S+E + ++R NP L+
Sbjct: 29 QKARGAATRARQKQRASLETMDKAVQRFRLQNPDLDSEALLTLPLLQLVQKLQSGELSPE 88
Query: 104 AMVDTRYTEALEEAKAADQKIA----LEEDISDKP----YLGVPFTSKESTACKGLSNTL 155
A+ T +A E K + + E +S P GVP + KE + KG +TL
Sbjct: 89 AVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQAPRQGLLYGVPVSLKECFSYKGHDSTL 148
Query: 156 GLLARKGKKADADAYIVERVKTAGGILLGNTNIPELLWS-ESRNMVYGQSNNPYNLCRTT 214
GL +G +++D +V+ +K G + +TN+P+ ++S + N ++GQ+ NP+ ++
Sbjct: 149 GLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSP 208
Query: 215 GASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEG 274
G SSGGE L+ + GS LGLGTD+GGS R P+ +CG+ G K T ++ G+ G +
Sbjct: 209 GGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQT 268
Query: 275 KSMLAAGPIVKHAE 288
L+ GP+ + E
Sbjct: 269 AVQLSLGPMARDVE 282
>pdb|2VYA|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
pdb|2VYA|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
Length = 587
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 92/153 (60%), Gaps = 1/153 (0%)
Query: 137 GVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELLWS-E 195
GVP + KE + KG +TLGL +G +++D +V+ +K G + +TN+P+ ++S +
Sbjct: 144 GVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYD 203
Query: 196 SRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHK 255
N ++GQ+ NP+ ++ G SSGGE L+ + GS LGLGTD+GGS R P+ +CG+ G K
Sbjct: 204 CSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLK 263
Query: 256 LTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAE 288
T ++ G+ G + L+ GP+ + E
Sbjct: 264 PTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVE 296
>pdb|4HBP|A Chain A, Crystal Structure Of Faah In Complex With Inhibitor
pdb|4HBP|B Chain B, Crystal Structure Of Faah In Complex With Inhibitor
Length = 550
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 91/153 (59%), Gaps = 1/153 (0%)
Query: 137 GVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELLWS-E 195
GVP + KE + KG +TLGL +G +++D +V+ +K G + +TN+P+ + S +
Sbjct: 107 GVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFD 166
Query: 196 SRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHK 255
N ++GQ+ NP+ ++ G SSGGE L+ + GS LGLGTD+GGS R P+ +CG+ G K
Sbjct: 167 CSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLK 226
Query: 256 LTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAE 288
T ++ G+ G + L+ GP+ + E
Sbjct: 227 PTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVE 259
>pdb|1MT5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|C Chain C, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|D Chain D, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|E Chain E, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|F Chain F, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|G Chain G, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|H Chain H, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|I Chain I, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|J Chain J, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|K Chain K, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|L Chain L, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|M Chain M, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|N Chain N, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|O Chain O, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|P Chain P, Crystal Structure Of Fatty Acid Amide Hydrolase
Length = 537
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 91/153 (59%), Gaps = 1/153 (0%)
Query: 137 GVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELLWS-E 195
GVP + KE + KG +TLGL +G +++D +V+ +K G + +TN+P+ + S +
Sbjct: 100 GVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFD 159
Query: 196 SRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHK 255
N ++GQ+ NP+ ++ G SSGGE L+ + GS LGLGTD+GGS R P+ +CG+ G K
Sbjct: 160 CSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLK 219
Query: 256 LTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAE 288
T ++ G+ G + L+ GP+ + E
Sbjct: 220 PTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVE 252
>pdb|4DO3|A Chain A, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
pdb|4DO3|B Chain B, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
Length = 571
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 121/254 (47%), Gaps = 33/254 (12%)
Query: 68 ESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLN------------------------ 103
+ A A + R K S+E + ++R NP L+
Sbjct: 25 QKARGAATRARQKQRASLETMDKAVQRFRLQNPDLDSEALLTLPLLQLVQKLQSGELSPE 84
Query: 104 AMVDTRYTEALEEAKAADQKIA----LEEDISDKP----YLGVPFTSKESTACKGLSNTL 155
A+ T +A E K + + E +S P GVP + KE + KG +TL
Sbjct: 85 AVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQAPRQGLLYGVPVSLKECFSYKGHDSTL 144
Query: 156 GLLARKGKKADADAYIVERVKTAGGILLGNTNIPELLWS-ESRNMVYGQSNNPYNLCRTT 214
GL +G +++D +V+ +K G + +TN+P+ + S + N ++GQ+ NP+ ++
Sbjct: 145 GLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFDCSNPLFGQTMNPWKSSKSP 204
Query: 215 GASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEG 274
G SSGGE L+ + GS LGLGTD+GGS R P+ +CG+ G K T ++ G+ G +
Sbjct: 205 GGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQT 264
Query: 275 KSMLAAGPIVKHAE 288
L+ GP+ + E
Sbjct: 265 AVQLSLGPMARDVE 278
>pdb|3QK5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QK5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ8|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ8|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ9|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ9|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QKV|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
pdb|3QKV|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
Length = 587
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 121/254 (47%), Gaps = 33/254 (12%)
Query: 68 ESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLN------------------------ 103
+ A A + R K S+E + ++R NP L+
Sbjct: 43 QKARGAATRARQKQRASLETMDKAVQRFRLQNPDLDSEALLTLPLLQLVQKLQSGELSPE 102
Query: 104 AMVDTRYTEALEEAKAADQKIA----LEEDISDKP----YLGVPFTSKESTACKGLSNTL 155
A+ T +A E K + + E +S P GVP + KE + KG +TL
Sbjct: 103 AVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQAPRQGLLYGVPVSLKECFSYKGHDSTL 162
Query: 156 GLLARKGKKADADAYIVERVKTAGGILLGNTNIPELLWS-ESRNMVYGQSNNPYNLCRTT 214
GL +G +++D +V+ +K G + +TN+P+ + S + N ++GQ+ NP+ ++
Sbjct: 163 GLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFDCSNPLFGQTMNPWKSSKSP 222
Query: 215 GASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEG 274
G SSGGE L+ + GS LGLGTD+GGS R P+ +CG+ G K T ++ G+ G +
Sbjct: 223 GGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQT 282
Query: 275 KSMLAAGPIVKHAE 288
L+ GP+ + E
Sbjct: 283 AVQLSLGPMARDVE 296
>pdb|2DC0|A Chain A, Crystal Structure Of Amidase
pdb|2DC0|B Chain B, Crystal Structure Of Amidase
Length = 434
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 88/205 (42%), Gaps = 20/205 (9%)
Query: 95 IEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDK----PYLGVPFTSKESTACKG 150
+E+ A D L+E A + +AL E++ P G+P T K+ KG
Sbjct: 21 LEEALERAKAFQDRNALAYLDEEAARKEALALTEELRRGQVRGPLHGLPLTVKDLFPVKG 80
Query: 151 LSNTLGLLARKGKKAD-----ADAYIVERVKTAGGILLGNTNIPEL-LWSESRNMVYGQS 204
+ R G KA +A V R++ AG +L TN E+ L N G
Sbjct: 81 MPT------RAGTKAPLPPLPEEARAVRRLREAGALLFAKTNXHEIALGITGENPWTGPV 134
Query: 205 NNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSR 264
N + R G SSGG A V+ + LGTD GGS RIPA + GV G K + G V+
Sbjct: 135 RNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDTGGSIRIPAGFNGVVGFKPSYGRVSLE 194
Query: 265 GIYGRDGKEGKSMLAAGPIVKHAED 289
G +S AGP+ + D
Sbjct: 195 GAL----PLSRSTDHAGPLTRSVRD 215
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Mn2+
pdb|2DQN|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Asn
pdb|2G5H|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
pdb|2G5I|A Chain A, Structure Of Trna-dependent Amidotransferase Gatcab
Complexed With Adp-alf4
pdb|3IP4|A Chain A, The High Resolution Structure Of Gatcab
pdb|2F2A|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Gln
Length = 485
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 134/292 (45%), Gaps = 13/292 (4%)
Query: 65 IVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKI 124
I ES + I++K I +VV+ + IE+ +P + + + A+++A+ D+
Sbjct: 3 IRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQ 62
Query: 125 ALEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLG 184
A +D D G+P K++ GL T +G ++ ++E++ +L+G
Sbjct: 63 A--KDQMDGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIG 120
Query: 185 NTNIPELLWSESRNMVY-GQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNR 243
N+ E S Y ++ NP++ G SSGG A V+A L LG+D GGS R
Sbjct: 121 KLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIR 180
Query: 244 IPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPD-- 301
PA YCGV G K T G V+ G+ S+ GP+ ++ +D + + D
Sbjct: 181 QPAAYCGVVGMKPTYGRVSRFGLVAF----ASSLDQIGPLTRNVKDNAIVLEAISGADVN 236
Query: 302 ---KLPAYNFDKSVDLAK-LKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALK 349
P + D + ++ K +K V P + ++ D+ +A++ V LK
Sbjct: 237 DSTSAPVDDVDFTSEIGKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLK 288
>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 475
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 119/252 (47%), Gaps = 26/252 (10%)
Query: 64 KIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQK 123
K+ +E +++++ R K + Q +E I++++P++ A + R ++E+
Sbjct: 8 KLTIEECLKLSEEEREK------LPQLSLETIKRLDPHVKAFISVRENVSVEKKGK---- 57
Query: 124 IALEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILL 183
+ G+P K++ G+ T + ++ DA +V+++K AG +++
Sbjct: 58 -----------FWGIPVAIKDNILTLGMRTTCASRILENYESVFDATVVKKMKEAGFVVV 106
Query: 184 GNTNIPEL-LWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSN 242
G N+ E + S + + + NP++L R G SSGG A VSA V LG+D GGS
Sbjct: 107 GKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSV 166
Query: 243 RIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDK 302
R PA CGV G+K T G V+ G+ S+ GPI K D + + D+
Sbjct: 167 RQPASLCGVVGYKPTYGLVSRYGLVAF----ASSLDQIGPITKTVRDAAILMEIISGRDE 222
Query: 303 LPAYNFDKSVDL 314
A ++ VD
Sbjct: 223 NDATTVNRKVDF 234
>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase
Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A
Resolution
Length = 476
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 116/252 (46%), Gaps = 26/252 (10%)
Query: 64 KIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQK 123
K+ +E +++++ R K + Q +E I++++P++ A + R ++E+
Sbjct: 9 KLTIEECLKLSEEEREK------LPQLSLETIKRLDPHVKAFISVRENVSVEKKGK---- 58
Query: 124 IALEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILL 183
+ G+P K++ G T + ++ DA +V++ K AG +++
Sbjct: 59 -----------FWGIPVAIKDNILTLGXRTTCASRILENYESVFDATVVKKXKEAGFVVV 107
Query: 184 GNTNIPEL-LWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSN 242
G N+ E S + + + NP++L R G SSGG A VSA V LG+D GGS
Sbjct: 108 GKANLDEFAXGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGXVVAALGSDTGGSV 167
Query: 243 RIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDK 302
R PA CGV G+K T G V+ G+ S+ GPI K D + + D+
Sbjct: 168 RQPASLCGVVGYKPTYGLVSRYGLVAF----ASSLDQIGPITKTVRDAAILXEIISGRDE 223
Query: 303 LPAYNFDKSVDL 314
A ++ VD
Sbjct: 224 NDATTVNRKVDF 235
>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYR|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYS|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
pdb|4GYS|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
Length = 621
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 94/201 (46%), Gaps = 27/201 (13%)
Query: 84 SVEVVQAFIERIEQVNPYLNAMVD--TRY------------TEALEEAKAADQKIALEED 129
++E +QAF+ + + + D TRY E L EA+A D A
Sbjct: 35 TLEGIQAFLAQGGTIEQVVTEAYDRITRYGDKAVWIALRPREEVLAEARALDASPA---- 90
Query: 130 ISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIP 189
+ KP GVPF K++ GL + A + D DA +V R++ AG I+LG TN+
Sbjct: 91 -TGKPLYGVPFAVKDNIDVAGLPCSAACPAFT-YEPDRDATVVARLRAAGAIVLGKTNLD 148
Query: 190 E----LLWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIP 245
+ L+ + S +G ++ +G SS G A V+A LGTD GS R+P
Sbjct: 149 QFATGLVGTRSP---FGAPRCVFDQDYISGGSSSGSAVAVAAGLVAFSLGTDTAGSGRVP 205
Query: 246 ALYCGVYGHKLTTGSVNSRGI 266
A + + G K T G +++ G+
Sbjct: 206 AAFNNLVGVKPTKGLLSTSGV 226
>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase
Length = 521
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 72/160 (45%), Gaps = 5/160 (3%)
Query: 131 SDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPE 190
SD G K++ G+ G +G DA +V R+ AG + G +
Sbjct: 84 SDGVLTGRRVAIKDNVTVAGVPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAGKAVCED 143
Query: 191 LLWSESR-NMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYC 249
L +S S G NP++ R G SSGG A LV+ +G D GGS RIPA +C
Sbjct: 144 LCFSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGSIRIPAAFC 203
Query: 250 GVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAED 289
GV GHK T G V G + + +++ GPI + D
Sbjct: 204 GVVGHKPTFGLVPYTGAFPIE----RTIDHLGPITRTVHD 239
>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase
Complexed With Benzamide
Length = 521
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 72/160 (45%), Gaps = 5/160 (3%)
Query: 131 SDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPE 190
SD G K++ G+ G +G DA +V R+ AG + G +
Sbjct: 84 SDGVLTGRRVAIKDNVTVAGVPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAGKAVCED 143
Query: 191 LLWSESR-NMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYC 249
L +S S G NP++ R G SSGG A LV+ +G D GG+ RIPA +C
Sbjct: 144 LCFSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGAIRIPAAFC 203
Query: 250 GVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAED 289
GV GHK T G V G + + +++ GPI + D
Sbjct: 204 GVVGHKPTFGLVPYTGAFPIE----RTIDHLGPITRTVHD 239
>pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1OBL|B Chain B, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 35.0 bits (79), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 93/390 (23%), Positives = 151/390 (38%), Gaps = 67/390 (17%)
Query: 134 PYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELLW 193
P G+ K+ + +G +G + +DA +V +K AG ++G T
Sbjct: 53 PLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAF-- 110
Query: 194 SESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCG--- 250
SR+ + NP+N + G SS G A V A L LGT GGS PA YCG
Sbjct: 111 -ASRDPT--ATLNPHNTGHSPGGSSAGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGTAA 167
Query: 251 ---------VYGHKLTTGSVNSRGIYGRDGKE-GKSMLAAGPIVKHAEDLLPYSKCLILP 300
G K + ++++ G++G ++ + +LA + +E +S I+P
Sbjct: 168 IKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLA---MTGRSE----FSG--IVP 218
Query: 301 DKLPAYNFDKSVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVN--ALKVVSHSEPED 358
K P ++ V E G V P ++ +QA K V + PE
Sbjct: 219 AKAP-----------RIGVVRQEFAG--AVEPAAEQGLQAAIKAAERAGASVQAIDLPEA 265
Query: 359 LSHIKQFRLGYDVWRYWVSKEKDDFCKMLYDFKGEAVWWKELIKLPLGMCTITFSSILKL 418
+ ++ WR ++ DF+ E + + + +S+
Sbjct: 266 V---------HEAWR---------IHPIIQDFEAHRALAWEFSEHHDEIAPMLRASLDAT 307
Query: 419 IDMQLPLPSDQWAXXXXXXXXXXXXXXXGDNGVLVFPAAPESAPYH-YATFFRPYNFTYW 477
+ + P D+ G + +L + +AP +AP A+ P W
Sbjct: 308 VGLT-PKEYDEARRIGRRGRRELGEVFEGVDVLLTY-SAPGTAPAKALASTGDPRYNRLW 365
Query: 478 ALFNILDFPVTNVPVGLDGKGLPLGVQVIA 507
L + P NVPV L GLP+GVQVIA
Sbjct: 366 TL---MGNPCVNVPV-LKVGGLPIGVQVIA 391
>pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9O|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9P|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1O9P|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 35.0 bits (79), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 92/390 (23%), Positives = 151/390 (38%), Gaps = 67/390 (17%)
Query: 134 PYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELLW 193
P G+ K+ + +G +G + +DA +V +K AG ++G T
Sbjct: 53 PLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAF-- 110
Query: 194 SESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCG--- 250
SR+ + NP+N + G +S G A V A L LGT GGS PA YCG
Sbjct: 111 -ASRDPT--ATLNPHNTGHSPGGASSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGTAA 167
Query: 251 ---------VYGHKLTTGSVNSRGIYGRDGKE-GKSMLAAGPIVKHAEDLLPYSKCLILP 300
G K + ++++ G++G ++ + +LA + +E +S I+P
Sbjct: 168 IKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLA---MTGRSE----FSG--IVP 218
Query: 301 DKLPAYNFDKSVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVN--ALKVVSHSEPED 358
K P ++ V E G V P ++ +QA K V + PE
Sbjct: 219 AKAP-----------RIGVVRQEFAG--AVEPAAEQGLQAAIKAAERAGASVQAIDLPEA 265
Query: 359 LSHIKQFRLGYDVWRYWVSKEKDDFCKMLYDFKGEAVWWKELIKLPLGMCTITFSSILKL 418
+ ++ WR ++ DF+ E + + + +S+
Sbjct: 266 V---------HEAWR---------IHPIIQDFEAHRALAWEFSEHHDEIAPMLRASLDAT 307
Query: 419 IDMQLPLPSDQWAXXXXXXXXXXXXXXXGDNGVLVFPAAPESAPYH-YATFFRPYNFTYW 477
+ + P D+ G + +L + +AP +AP A+ P W
Sbjct: 308 VGLT-PKEYDEARRIGRRGRRELGEVFEGVDVLLTY-SAPGTAPAKALASTGDPRYNRLW 365
Query: 478 ALFNILDFPVTNVPVGLDGKGLPLGVQVIA 507
L + P NVPV L GLP+GVQVIA
Sbjct: 366 TL---MGNPCVNVPV-LKVGGLPIGVQVIA 391
>pdb|1OBK|A Chain A, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBK|B Chain B, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 93/390 (23%), Positives = 151/390 (38%), Gaps = 67/390 (17%)
Query: 134 PYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELLW 193
P G+ K+ + +G +G + +DA +V +K AG ++G T
Sbjct: 53 PLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAF-- 110
Query: 194 SESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCG--- 250
SR+ + NP+N + G SS G A V A L LGT GGS PA YCG
Sbjct: 111 -ASRDPT--ATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSVIQPAAYCGTAA 167
Query: 251 ---------VYGHKLTTGSVNSRGIYGRDGKE-GKSMLAAGPIVKHAEDLLPYSKCLILP 300
G K + ++++ G++G ++ + +LA + +E +S I+P
Sbjct: 168 IKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLA---MTGRSE----FSG--IVP 218
Query: 301 DKLPAYNFDKSVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVN--ALKVVSHSEPED 358
K P ++ V E G V P ++ +QA K V + PE
Sbjct: 219 AKAP-----------RIGVVRQEFAG--AVEPAAEQGLQAAIKAAERAGASVQAIDLPEA 265
Query: 359 LSHIKQFRLGYDVWRYWVSKEKDDFCKMLYDFKGEAVWWKELIKLPLGMCTITFSSILKL 418
+ ++ WR ++ DF+ E + + + +S+
Sbjct: 266 V---------HEAWR---------IHPIIQDFEAHRALAWEFSEHHDEIAPMLRASLDAT 307
Query: 419 IDMQLPLPSDQWAXXXXXXXXXXXXXXXGDNGVLVFPAAPESAPYH-YATFFRPYNFTYW 477
+ + P D+ G + +L + +AP +AP A+ P W
Sbjct: 308 VGLT-PKEYDEARRIGRRGRRELGEVFEGVDVLLTY-SAPGTAPAKALASTGDPRYNRLW 365
Query: 478 ALFNILDFPVTNVPVGLDGKGLPLGVQVIA 507
L + P NVPV L GLP+GVQVIA
Sbjct: 366 TL---MGNPCVNVPV-LKVGGLPIGVQVIA 391
>pdb|1OCK|A Chain A, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCK|B Chain B, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCL|A Chain A, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCL|B Chain B, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCM|A Chain A, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
pdb|1OCM|B Chain B, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
Length = 412
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 93/390 (23%), Positives = 151/390 (38%), Gaps = 67/390 (17%)
Query: 134 PYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELLW 193
P G+ K+ + +G +G + +DA +V +K AG ++G T
Sbjct: 53 PLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAF-- 110
Query: 194 SESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCG--- 250
SR+ + NP+N + G SS G A V A L LGT GGS PA YCG
Sbjct: 111 -ASRDPT--ATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGTAA 167
Query: 251 ---------VYGHKLTTGSVNSRGIYGRDGKE-GKSMLAAGPIVKHAEDLLPYSKCLILP 300
G K + ++++ G++G ++ + +LA + +E +S I+P
Sbjct: 168 IKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLA---MTGRSE----FSG--IVP 218
Query: 301 DKLPAYNFDKSVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVN--ALKVVSHSEPED 358
K P ++ V E G V P ++ +QA K V + PE
Sbjct: 219 AKAP-----------RIGVVRQEFAG--AVEPAAEQGLQAAIKAAERAGASVQAIDLPEA 265
Query: 359 LSHIKQFRLGYDVWRYWVSKEKDDFCKMLYDFKGEAVWWKELIKLPLGMCTITFSSILKL 418
+ ++ WR ++ DF+ E + + + +S+
Sbjct: 266 V---------HEAWR---------IHPIIQDFEAHRALAWEFSEHHDEIAPMLRASLDAT 307
Query: 419 IDMQLPLPSDQWAXXXXXXXXXXXXXXXGDNGVLVFPAAPESAPYH-YATFFRPYNFTYW 477
+ + P D+ G + +L + +AP +AP A+ P W
Sbjct: 308 VGLT-PKEYDEARRIGRRGRRELGEVFEGVDVLLTY-SAPGTAPAKALASTGDPRYNRLW 365
Query: 478 ALFNILDFPVTNVPVGLDGKGLPLGVQVIA 507
L + P NVPV L GLP+GVQVIA
Sbjct: 366 TL---MGNPCVNVPV-LKVGGLPIGVQVIA 391
>pdb|1OBI|A Chain A, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBI|B Chain B, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 94/390 (24%), Positives = 152/390 (38%), Gaps = 67/390 (17%)
Query: 134 PYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELLW 193
P G+ K+ + +G +G + +DA +V +K AG ++G T
Sbjct: 53 PLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAF-- 110
Query: 194 SESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCG--- 250
SR+ + NP+N + GASS G A V A L LGT GGS PA YCG
Sbjct: 111 -ASRDPT--ATLNPHNTGHSPGASSSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGTAA 167
Query: 251 ---------VYGHKLTTGSVNSRGIYGRDGKE-GKSMLAAGPIVKHAEDLLPYSKCLILP 300
G K + ++++ G++G ++ + +LA + +E +S I+P
Sbjct: 168 IKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLA---MTGRSE----FSG--IVP 218
Query: 301 DKLPAYNFDKSVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVN--ALKVVSHSEPED 358
K P ++ V E G V P ++ +QA K V + PE
Sbjct: 219 AKAP-----------RIGVVRQEFAG--AVEPAAEQGLQAAIKAAERAGASVQAIDLPEA 265
Query: 359 LSHIKQFRLGYDVWRYWVSKEKDDFCKMLYDFKGEAVWWKELIKLPLGMCTITFSSILKL 418
+ ++ WR ++ DF+ E + + + +S+
Sbjct: 266 V---------HEAWR---------IHPIIQDFEAHRALAWEFSEHHDEIAPMLRASLDAT 307
Query: 419 IDMQLPLPSDQWAXXXXXXXXXXXXXXXGDNGVLVFPAAPESAPYH-YATFFRPYNFTYW 477
+ + P D+ G + +L + +AP +AP A+ P W
Sbjct: 308 VGLT-PKEYDEARRIGRRGRRELGEVFEGVDVLLTY-SAPGTAPAKALASTGDPRYNRLW 365
Query: 478 ALFNILDFPVTNVPVGLDGKGLPLGVQVIA 507
L + P NVPV L GLP+GVQVIA
Sbjct: 366 TL---MGNPCVNVPV-LKVGGLPIGVQVIA 391
>pdb|1O9Q|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9Q|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 92/390 (23%), Positives = 150/390 (38%), Gaps = 67/390 (17%)
Query: 134 PYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELLW 193
P G+ K+ + +G +G + +DA +V +K AG ++G T
Sbjct: 53 PLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAF-- 110
Query: 194 SESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCG--- 250
SR+ + NP+N + G SS G A V A L LGT GG PA YCG
Sbjct: 111 -ASRDPT--ATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGXVIRPAAYCGTAA 167
Query: 251 ---------VYGHKLTTGSVNSRGIYGRDGKE-GKSMLAAGPIVKHAEDLLPYSKCLILP 300
G K + ++++ G++G ++ + +LA + +E +S I+P
Sbjct: 168 IKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLA---MTGRSE----FSG--IVP 218
Query: 301 DKLPAYNFDKSVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVN--ALKVVSHSEPED 358
K P ++ V E G V P ++ +QA K V + PE
Sbjct: 219 AKAP-----------RIGVVRQEFAG--AVEPAAEQGLQAAIKAAERAGASVQAIDLPEA 265
Query: 359 LSHIKQFRLGYDVWRYWVSKEKDDFCKMLYDFKGEAVWWKELIKLPLGMCTITFSSILKL 418
+ ++ WR ++ DF+ E + + + +S+
Sbjct: 266 V---------HEAWR---------IHPIIQDFEAHRALAWEFSEHHDEIAPMLRASLDAT 307
Query: 419 IDMQLPLPSDQWAXXXXXXXXXXXXXXXGDNGVLVFPAAPESAPYH-YATFFRPYNFTYW 477
+ + P D+ G + +L + +AP +AP A+ P W
Sbjct: 308 VGLT-PKEYDEARRIGRRGRRELGEVFEGVDVLLTY-SAPGTAPAKALASTGDPRYNRLW 365
Query: 478 ALFNILDFPVTNVPVGLDGKGLPLGVQVIA 507
L + P NVPV L GLP+GVQVIA
Sbjct: 366 TL---MGNPCVNVPV-LKVGGLPIGVQVIA 391
>pdb|1OBJ|A Chain A, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBJ|B Chain B, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 92/390 (23%), Positives = 150/390 (38%), Gaps = 67/390 (17%)
Query: 134 PYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELLW 193
P G+ K+ + +G +G + +DA +V +K AG ++G T
Sbjct: 53 PLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAF-- 110
Query: 194 SESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCG--- 250
SR+ + NP+N + G SS G A V A L LG GGS PA YCG
Sbjct: 111 -ASRDPT--ATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGAQTGGSVIRPAAYCGTAA 167
Query: 251 ---------VYGHKLTTGSVNSRGIYGRDGKE-GKSMLAAGPIVKHAEDLLPYSKCLILP 300
G K + ++++ G++G ++ + +LA + +E +S I+P
Sbjct: 168 IKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLA---MTGRSE----FSG--IVP 218
Query: 301 DKLPAYNFDKSVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVN--ALKVVSHSEPED 358
K P ++ V E G V P ++ +QA K V + PE
Sbjct: 219 AKAP-----------RIGVVRQEFAG--AVEPAAEQGLQAAIKAAERAGASVQAIDLPEA 265
Query: 359 LSHIKQFRLGYDVWRYWVSKEKDDFCKMLYDFKGEAVWWKELIKLPLGMCTITFSSILKL 418
+ ++ WR ++ DF+ E + + + +S+
Sbjct: 266 V---------HEAWR---------IHPIIQDFEAHRALAWEFSEHHDEIAPMLRASLDAT 307
Query: 419 IDMQLPLPSDQWAXXXXXXXXXXXXXXXGDNGVLVFPAAPESAPYH-YATFFRPYNFTYW 477
+ + P D+ G + +L + +AP +AP A+ P W
Sbjct: 308 VGLT-PKEYDEARRIGRRGRRELGEVFEGVDVLLTY-SAPGTAPAKALASTGDPRYNRLW 365
Query: 478 ALFNILDFPVTNVPVGLDGKGLPLGVQVIA 507
L + P NVPV L GLP+GVQVIA
Sbjct: 366 TL---MGNPCVNVPV-LKVGGLPIGVQVIA 391
>pdb|1O9N|A Chain A, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9N|B Chain B, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 89/363 (24%), Positives = 143/363 (39%), Gaps = 67/363 (18%)
Query: 161 KGKKADADAYIVERVKTAGGILLGNTNIPELLWSESRNMVYGQSNNPYNLCRTTGASSGG 220
+G + +DA +V +K AG ++G T SR+ + NP+N + G SS G
Sbjct: 80 RGWQPRSDAPVVMMLKRAGATIIGKTTTTAF---ASRDPT--ATLNPHNTGHSPGGSSSG 134
Query: 221 EACLVSACGSVLGLGTDLGGSNRIPALYCG------------VYGHKLTTGSVNSRGIYG 268
A V A L LGT GGS PA YCG G K + ++++ G++G
Sbjct: 135 SAAAVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFG 194
Query: 269 RDGKE-GKSMLAAGPIVKHAEDLLPYSKCLILPDKLPAYNFDKSVDLAKLKVFYVEEPGD 327
++ + +LA + +E +S I+P K P ++ V E G
Sbjct: 195 ARAEDLARGLLA---MTGRSE----FSG--IVPAKAP-----------RIGVVRQEFAG- 233
Query: 328 MKVSPMSKDMIQAIRKCVN--ALKVVSHSEPEDLSHIKQFRLGYDVWRYWVSKEKDDFCK 385
V P ++ +QA K V + PE + ++ WR
Sbjct: 234 -AVEPAAEQGLQAAIKAAERAGASVQAIDLPEAV---------HEAWR---------IHP 274
Query: 386 MLYDFKGEAVWWKELIKLPLGMCTITFSSILKLIDMQLPLPSDQWAXXXXXXXXXXXXXX 445
++ DF+ E + + + +S+ + + P D+
Sbjct: 275 IIQDFEAHRALAWEFSEHHDEIAPMLRASLDATVGLT-PKEYDEARRIGRRGRRELGEVF 333
Query: 446 XGDNGVLVFPAAPESAPYH-YATFFRPYNFTYWALFNILDFPVTNVPVGLDGKGLPLGVQ 504
G + +L + +AP +AP A+ P W L + P NVPV L GLP+GVQ
Sbjct: 334 EGVDVLLTY-SAPGTAPAKALASTGDPRYNRLWTL---MGNPCVNVPV-LKVGGLPIGVQ 388
Query: 505 VIA 507
VIA
Sbjct: 389 VIA 391
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,802,930
Number of Sequences: 62578
Number of extensions: 615200
Number of successful extensions: 1373
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1304
Number of HSP's gapped (non-prelim): 46
length of query: 508
length of database: 14,973,337
effective HSP length: 103
effective length of query: 405
effective length of database: 8,527,803
effective search space: 3453760215
effective search space used: 3453760215
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)