Query psy7558
Match_columns 508
No_of_seqs 409 out of 1674
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 21:28:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7558.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7558hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ip4_A Glutamyl-tRNA(Gln) amid 100.0 1E-100 3E-105 818.1 37.8 432 64-508 2-458 (485)
2 2dc0_A Probable amidase; struc 100.0 2.1E-99 7E-104 796.6 34.7 402 68-508 1-415 (434)
3 3h0l_A Glutamyl-tRNA(Gln) amid 100.0 1.3E-98 5E-103 798.5 34.2 426 65-508 2-451 (478)
4 3kfu_E Glutamyl-tRNA(Gln) amid 100.0 2.9E-97 1E-101 786.3 33.9 417 68-508 1-440 (471)
5 3a2q_A 6-aminohexanoate-cyclic 100.0 6.5E-97 2E-101 790.5 36.4 414 64-508 5-456 (493)
6 1m22_A Peptide amidase, PAM; e 100.0 5.6E-97 2E-101 792.4 35.9 426 64-508 7-466 (503)
7 3ppm_A Fatty-acid amide hydrol 100.0 4.3E-94 1.5E-98 774.2 38.9 430 58-508 60-548 (573)
8 2gi3_A Glutamyl-tRNA(Gln) amid 100.0 1.4E-95 5E-100 777.1 26.4 418 61-508 3-443 (476)
9 1o9p_A Malonamidase E2; malona 100.0 1.6E-93 5.5E-98 747.2 33.6 387 68-508 2-392 (414)
10 3a1k_A Amidase; AS family enzy 100.0 5.7E-92 2E-96 754.3 16.7 436 59-508 4-483 (521)
11 3shg_B VBHA; ampylation, adeny 60.4 11 0.00036 27.2 4.0 28 70-97 32-59 (61)
12 2lz1_A Nuclear factor erythroi 24.9 56 0.0019 25.4 3.1 39 58-98 33-71 (90)
13 1nha_A TFIIF-alpha, transcript 21.5 1.1E+02 0.0038 23.4 4.2 33 69-101 34-68 (82)
14 2j6y_A Phosphoserine phosphata 20.3 1.5E+02 0.005 24.1 4.9 35 68-102 28-62 (111)
No 1
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Probab=100.00 E-value=9.6e-101 Score=818.08 Aligned_cols=432 Identities=24% Similarity=0.327 Sum_probs=360.6
Q ss_pred hhcccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCcccEEEecChHHHHHHHHHHhHHH-HccCCCCCCCCCCcceEe
Q psy7558 64 KIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKI-ALEEDISDKPYLGVPFTS 142 (508)
Q Consensus 64 ~l~~~sa~~l~~~i~~g~~t~~evv~a~l~ri~~~n~~lna~~~~~~~~Al~~A~~~D~~~-~~g~~l~~~PL~GvPi~v 142 (508)
++..+|+++|+++|++|++|++||+++||+||+++|+.+|||+++++|+|+++|+++|+++ ++|+. ||||||||+|
T Consensus 2 ~l~~~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~~~~~g~~---gpL~GvPi~v 78 (485)
T 3ip4_A 2 SIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMD---GKLFGIPMGI 78 (485)
T ss_dssp CGGGCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHTTCCC---STTTTCEEEE
T ss_pred CcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHHHHHHHHHHhcCCC---CCcCCCEEEE
Confidence 4778999999999999999999999999999999999999999999999999999999998 77765 9999999999
Q ss_pred ecCcCCCCcccccccccccCCCCCCcHHHHHHHHHcCCeEEEEeCccccC-CCCCCCCCCCCCCCCCCCCCCCCCCChhh
Q psy7558 143 KESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGGE 221 (508)
Q Consensus 143 KD~~~v~G~~tt~Gs~~~~~~~~~~da~~V~rLr~aGAIilgkTn~~E~~-~~~t~n~~~G~t~NP~d~~~t~GGSSgGs 221 (508)
||+|+++|++||+||..++++++.+||++|+|||+|||||+||||||||+ +++|.|++||+|+||||++|+||||||||
T Consensus 79 KD~~~v~G~~tt~Gs~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~t~n~~~G~t~NP~~~~~~pGGSSgGs 158 (485)
T 3ip4_A 79 KDNIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGS 158 (485)
T ss_dssp ETTBCBTTBCCCTTSGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHH
T ss_pred EcCcccCCCccCCCChhhcCCCCCCCcHHHHHHHHCCCEEEEecCCcccccCCCCCCCCCCCcCCccccCcCCCCCccHH
Confidence 99999999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHhcCCCccccccccccccchhhhccCcccccCCCCcccCCCCCCCCCCCCCCceeecccCCCcchHHHHHHHhcCCC
Q psy7558 222 ACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPD 301 (508)
Q Consensus 222 aaaVAag~~~~aiGsD~gGSIRiPAa~cGv~G~KPT~G~vs~~G~~p~~~~~~~~~~~~GpmaR~v~Dl~~ll~vl~g~~ 301 (508)
||+||+|++++|+|||||||||+||+||||||||||+|+||+.|++|+++ ++|++|||||||+|+++++++|+|+|
T Consensus 159 AaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~p~~~----sld~~Gp~aRsv~D~a~~l~vl~g~d 234 (485)
T 3ip4_A 159 AAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFAS----SLDQIGPLTRNVKDNAIVLEAISGAD 234 (485)
T ss_dssp HHHHHTTSCSEEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCT----TTCCEEEEESSHHHHHHHHHHHBSCC
T ss_pred HHHhhcCCCceeeeccCCcchhhhHHHhCCeeecCCCCcccCCCCCCccc----ccceeccccCCHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999887 89999999999999999999999998
Q ss_pred CCCCCCCCccC---------cCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCeeeecCCCCchhhHHHHH
Q psy7558 302 KLPAYNFDKSV---------DLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIKQFRLGYDVW 372 (508)
Q Consensus 302 ~~d~~~~~~~~---------~~~~lrIg~~~~~g~~~~~~v~~~v~~a~~~av~~L~~~lG~~V~~~v~lp~~~~~~~~~ 372 (508)
+.|+.+.+.+. +++++||||+.+. +...++++++++++++++.|+++ |++|++ +++|.+++....|
T Consensus 235 ~~d~~~~~~~~~~~~~~~~~~~~~lrigv~~~~---~~~~~~~~v~~a~~~a~~~L~~~-G~~v~~-~~~p~~~~~~~~~ 309 (485)
T 3ip4_A 235 VNDSTSAPVDDVDFTSEIGKDIKGLKVALPKEY---LGEGVADDVKEAVQNAVETLKSL-GAVVEE-VSLPNTKFGIPSY 309 (485)
T ss_dssp TTCTTSCCCCCCCCSTTTTCCCTTCEEEEEGGG---GSTTSCHHHHHHHHHHHHHHHHT-TCEEEE-ECCTTGGGHHHHH
T ss_pred cccccccccCccchhhhhccCccCcEEEEECCc---ccCCCCHHHHHHHHHHHHHHHHC-CCEEEE-eCCCcHHHHHHHH
Confidence 87766543321 4688999999763 23578999999999999999995 999999 9999887777666
Q ss_pred HHHHHhhhhh-HHHHHh---hc-ccchhhHHHHHhhhc--CCCcchHHHHHH-HHH--hCCChHHHHHHHHHHHHHHHHH
Q psy7558 373 RYWVSKEKDD-FCKMLY---DF-KGEAVWWKELIKLPL--GMCTITFSSILK-LID--MQLPLPSDQWAKEHTEILKTKL 442 (508)
Q Consensus 373 ~~~~~~~~~~-~~~~l~---~~-~~~~~~~~e~~~~~~--~~~~~~~~~~~~-l~~--~~~s~~~y~~a~~~r~~~~~~~ 442 (508)
..++..+... +..+.. .. ......+.+.+.... .........+.. ... ......+|.++++.|.++++++
T Consensus 310 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~ 389 (485)
T 3ip4_A 310 YVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDF 389 (485)
T ss_dssp HHHHHHHHHHHTTTCSSSSSSCCCTTCCSHHHHHHHHHHHHSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhccccccccccHHHHHHhhhhhhcCHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 5544432210 100000 00 001111222221110 111111111111 101 2233456899999999999999
Q ss_pred HHHhcCCcEEEeCCCCCCCCCCCccccCC----CCchhhHHhhhhcCcceeEcccCCCCCCCeeEEEEcC
Q psy7558 443 TELLGDNGVLVFPAAPESAPYHYATFFRP----YNFTYWALFNILDFPVTNVPVGLDGKGLPLGVQVIAS 508 (508)
Q Consensus 443 ~~~l~~~dvll~Pt~p~~Ap~~~~~~~~~----~~~~yt~l~N~lG~PaisvP~G~~~~GLPvGvQlvg~ 508 (508)
.++|+++|+||+||+|.+||++++....+ ....||.+||++|+|+++||+|++ +|||+||||||+
T Consensus 390 ~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvGlqlvg~ 458 (485)
T 3ip4_A 390 DKVFENYDVVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQS-NGRPIGLQFIGK 458 (485)
T ss_dssp HHHHTTCSEEEEESSSSSCCBTTTSTTCHHHHHGGGTTTHHHHHHTCCEEEEEEEEE-TTEEEEEEEECS
T ss_pred HHHHhcCCEEEeCCCCCCCCCcccccCChHHHhhhhhhhhhhHhhCCCeEEEeCCcC-CCCCEeEEEEcC
Confidence 99999999999999999999998643221 123489999999999999999996 999999999985
No 2
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=100.00 E-value=2.1e-99 Score=796.63 Aligned_cols=402 Identities=23% Similarity=0.282 Sum_probs=349.8
Q ss_pred cCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCcccEEEecChHHHHHHHHHHhHHHHccCCCCCCCCCCcceEeecCcC
Q psy7558 68 ESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSKESTA 147 (508)
Q Consensus 68 ~sa~~l~~~i~~g~~t~~evv~a~l~ri~~~n~~lna~~~~~~~~Al~~A~~~D~~~~~g~~l~~~PL~GvPi~vKD~~~ 147 (508)
+|+.+|+++|++|++|++||+++||+||+++|+ +|||+++++|+|+++|+++|+++++|+. .||||||||+|||+|+
T Consensus 1 ~~~~~l~~~~~~g~~s~~el~~a~l~ri~~~~~-lna~~~~~~~~Al~~A~~~d~~~~~g~~--~gpL~GvPi~vKD~~~ 77 (434)
T 2dc0_A 1 MDLLEAKRLLETGRTTPLALLEEALERAKAFQD-RNALAYLDEEAARKEALALTEELRRGQV--RGPLHGLPLTVKDLFP 77 (434)
T ss_dssp CCHHHHHHHHHTTSCCHHHHHHHHHHHHHHTGG-GCCEEEECHHHHHHHHHHHHHHHHTTCC--CSTTTTCEEEEETTSC
T ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-CcEEEEcCHHHHHHHHHHHHHHHhcCCC--CCCcCCeeEEEEeccc
Confidence 489999999999999999999999999999999 9999999999999999999999999887 5999999999999999
Q ss_pred CCCcccccccccccCCCC-CCcHHHHHHHHHcCCeEEEEeCccccC-CCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHH
Q psy7558 148 CKGLSNTLGLLARKGKKA-DADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGGEACLV 225 (508)
Q Consensus 148 v~G~~tt~Gs~~~~~~~~-~~da~~V~rLr~aGAIilgkTn~~E~~-~~~t~n~~~G~t~NP~d~~~t~GGSSgGsaaaV 225 (508)
++|++||+||..+ +++ .+||++|+|||+||||++||||||||+ +.+|+|++||+|+||||+.|+||||||||||+|
T Consensus 78 v~G~~tt~Gs~~~--~~~a~~dA~vV~rL~~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaaV 155 (434)
T 2dc0_A 78 VKGMPTRAGTKAP--LPPLPEEARAVRRLREAGALLFAKTNMHEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAV 155 (434)
T ss_dssp BTTBCCCTTCSSC--CCCCCSSCHHHHHHHHTTCEEEEEECCSGGGCCSSCCCTTTCCCBCSSCTTBBCCSSSHHHHHHH
T ss_pred cCCcccCCCCccc--CCCCCCCHHHHHHHHHCCCEEEEEeChhHHhcCCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHH
Confidence 9999999999999 666 899999999999999999999999999 999999999999999999999999999999999
Q ss_pred hcCCCccccccccccccchhhhccCcccccCCCCcccCCCCCCCCCCCCCCceeecccCCCcchHHHHHHHhcCCCCCCC
Q psy7558 226 SACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPA 305 (508)
Q Consensus 226 Aag~~~~aiGsD~gGSIRiPAa~cGv~G~KPT~G~vs~~G~~p~~~~~~~~~~~~GpmaR~v~Dl~~ll~vl~g~~~~d~ 305 (508)
|+|++++|+|||||||||+||+||||||||||+|+||+.|++|+++ ++|++|||||+|+|+++++++|+|+ +.|+
T Consensus 156 Aag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~g~~~~~~----s~d~~Gp~arsv~D~a~~l~~l~g~-~~d~ 230 (434)
T 2dc0_A 156 ALGIGLASLGTDTGGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSR----STDHAGPLTRSVRDAHFLTEILAGE-SIPL 230 (434)
T ss_dssp HHTSSSCEEEECSSSTTHHHHHHHTCEEEECSTTSSCCTTSCCSCT----TTCCEEEEESSHHHHHHHHHHHHTS-CCCC
T ss_pred HcCCCceeeecCCChhhhhhHHhCCCEEEECCCCCCCCCCCCCCCC----ccCeeCcccCCHHHHHHHHHHHhCC-CCCc
Confidence 9999999999999999999999999999999999999999999887 9999999999999999999999998 5343
Q ss_pred CCCCccCcCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCeeeecCCCCchhhHHHHHHHHHHhhhhhHHH
Q psy7558 306 YNFDKSVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIKQFRLGYDVWRYWVSKEKDDFCK 385 (508)
Q Consensus 306 ~~~~~~~~~~~lrIg~~~~~g~~~~~~v~~~v~~a~~~av~~L~~~lG~~V~~~v~lp~~~~~~~~~~~~~~~~~~~~~~ 385 (508)
. +++++||||+.+++ +.+++++++++++++++.|+++ |++|++ +++| +++....+..++..+...
T Consensus 231 ~------~~~~lrig~~~~~~---~~~~~~~v~~a~~~a~~~L~~~-G~~v~~-~~~p-~~~~~~~~~~~~~~e~~~--- 295 (434)
T 2dc0_A 231 E------GVQNPVFGVPLDFL---EGRLGVEVRKAFTRLLEDLPAL-RAEVRE-VSLP-LEGVYEVYTRLVRYEAAR--- 295 (434)
T ss_dssp C------CCCSCEEEECHHHH---TTCSCHHHHHHHHHHHHHTTTT-TCEEEE-CCCC-CTTHHHHHHHHHHHHHHH---
T ss_pred c------cccCCEEEEECccc---cCCCCHHHHHHHHHHHHHHHHC-CCEEEE-eCCC-cHHHHHHHHHHHHHHHHH---
Confidence 2 46789999987643 4568999999999999999995 999999 9988 766666554444322110
Q ss_pred HHhhcccchhhHHHHHhhhcCCCcchHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCCC
Q psy7558 386 MLYDFKGEAVWWKELIKLPLGMCTITFSSILKLID--MQLPLPSDQWAKEHTEILKTKLTELLGDNGVLVFPAAPESAPY 463 (508)
Q Consensus 386 ~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~--~~~s~~~y~~a~~~r~~~~~~~~~~l~~~dvll~Pt~p~~Ap~ 463 (508)
.+ .+.++. ......+.+...++ ..++..+|.++++.|+++++++.++|+++|+||+||+|.+||+
T Consensus 296 ~~----------~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~ 362 (434)
T 2dc0_A 296 IH----------EKALKE---HPEGFSPQVREALLAGLALTEKDYRDAVAEREALRLELVKALRGVDALLLPVQPLPAPP 362 (434)
T ss_dssp HS----------HHHHHH---CGGGSCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEESCSSSCCB
T ss_pred HH----------HHHHHh---chhhcCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEECCCCCCCcc
Confidence 00 001110 01111133333223 6788999999999999999999999999999999999999999
Q ss_pred CCccccC--------CCC-chhhHHhhhhcCcceeEcccCCCCCCCeeEEEEcC
Q psy7558 464 HYATFFR--------PYN-FTYWALFNILDFPVTNVPVGLDGKGLPLGVQVIAS 508 (508)
Q Consensus 464 ~~~~~~~--------~~~-~~yt~l~N~lG~PaisvP~G~~~~GLPvGvQlvg~ 508 (508)
+++.... ... ..||.+||++|+|+++||+|+ .+|||+||||||+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGvqlvg~ 415 (434)
T 2dc0_A 363 LGTEEVELESGRKGHREAFITLTLPFSLLGVPTLALPFAK-VEGMPVGLQVVGA 415 (434)
T ss_dssp TTCCEEEETTEEEEHHHHHHTTTHHHHHTTCCEEEEEEEE-ETTEEEEEEEECC
T ss_pred CcccccccccchhhhhhhhhhhhhhhhhhCCCeEEEecCC-CCCCCeEEEEECC
Confidence 8764210 011 468999999999999999999 8999999999985
No 3
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Probab=100.00 E-value=1.3e-98 Score=798.49 Aligned_cols=426 Identities=21% Similarity=0.304 Sum_probs=355.4
Q ss_pred hcccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCcccEEEecChHHHHHHHHHHhHHHHccCCCCCCCCCCcceEeec
Q psy7558 65 IVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSKE 144 (508)
Q Consensus 65 l~~~sa~~l~~~i~~g~~t~~evv~a~l~ri~~~n~~lna~~~~~~~~Al~~A~~~D~~~~~g~~l~~~PL~GvPi~vKD 144 (508)
+..+|+.+|+++|++|++|++||+++||+||+++|+.+|||+++++|+|+++|+++|++ .||||||||+|||
T Consensus 2 l~~~sa~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~--------~gpL~GvPi~vKD 73 (478)
T 3h0l_A 2 LWKKSLSELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLKER--------ELPLFGIPIAVKD 73 (478)
T ss_dssp CTTSCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHTCCCT--------TSTTTTCEEEEET
T ss_pred CCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCcCcEEEEeChHHHHHHHHhhchh--------cCCcCCceEEEEc
Confidence 45689999999999999999999999999999999999999999999999999999965 3999999999999
Q ss_pred CcCCCCcccccccccccCCCCCCcHHHHHHHHHcCCeEEEEeCccccC-CCCCCCCCCCCCCCCCCCCCCCCCCChhhHH
Q psy7558 145 STACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGGEAC 223 (508)
Q Consensus 145 ~~~v~G~~tt~Gs~~~~~~~~~~da~~V~rLr~aGAIilgkTn~~E~~-~~~t~n~~~G~t~NP~d~~~t~GGSSgGsaa 223 (508)
+|+++|++||+||..++++++.+||++|+|||+||||++||||||||+ +.+|.|++||+|+||||++|+||||||||||
T Consensus 74 ~~~~~G~~tt~Gs~~~~~~~~~~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaa 153 (478)
T 3h0l_A 74 NILVEGEKTTCASKILENFVAPYDATVIERLKKAGALIVGKTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAA 153 (478)
T ss_dssp TBCCTTSBCCTTCGGGTTCBCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCCTTCTTBCCCSSSHHHHH
T ss_pred CccCCCCCcCCcCHhhcCCCCCCCHHHHHHHHHCCCEEEEEeCchhhhcCCCCCCCCCCCcCCCccCCCCCCcchHHHHH
Confidence 999999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHhcCCCccccccccccccchhhhccCcccccCCCCcccCCCCCCCCCCCCCCceeecccCCCcchHHHHHHHhcCCCCC
Q psy7558 224 LVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKL 303 (508)
Q Consensus 224 aVAag~~~~aiGsD~gGSIRiPAa~cGv~G~KPT~G~vs~~G~~p~~~~~~~~~~~~GpmaR~v~Dl~~ll~vl~g~~~~ 303 (508)
+||+|++++|+|||||||||+||+||||||||||+|+||+.|++|+++ ++|++|||||+|+|+++++++|+|+|+.
T Consensus 154 aVAag~~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~----~~d~~Gp~arsv~D~a~~l~vl~g~d~~ 229 (478)
T 3h0l_A 154 SVAVLSAPVSLGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFAS----SLDQIGVFGRRTEDVALVLEVISGWDEK 229 (478)
T ss_dssp HHHHTSSSCEEEECSSSTTHHHHHHHTCEEEECCTTSBCCTTBCCSCT----TTCCEEEEESSHHHHHHHHHHHBSCCTT
T ss_pred HHHCCCCceeeecCCCCcchhhhHHhCCeeEeCCCCcccCCCCCCCcc----CCCeecceeCCHHHHHHHHHHhcCCCcc
Confidence 999999999999999999999999999999999999999999999887 8999999999999999999999999987
Q ss_pred CCCCCCccC---------cCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCeeeecCCCCchhhHHHHHHH
Q psy7558 304 PAYNFDKSV---------DLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIKQFRLGYDVWRY 374 (508)
Q Consensus 304 d~~~~~~~~---------~~~~lrIg~~~~~g~~~~~~v~~~v~~a~~~av~~L~~~lG~~V~~~v~lp~~~~~~~~~~~ 374 (508)
|+.+.+.+. +++++||||+.+. +...++++++++++++++.|+++ |++|++ +++|.+.+....|..
T Consensus 230 d~~~~~~p~~~~~~~~~~~~~~lrIgv~~~~---~~~~~~p~v~~a~~~a~~~L~~~-G~~v~~-v~~p~~~~~~~~~~~ 304 (478)
T 3h0l_A 230 DSTSAKVPVPEWSEEVKKEVKGLKIGLPKEF---FEYELQPQVKEAFENFIKELEKE-GFEIKE-VSLPHVKYSIPTYYI 304 (478)
T ss_dssp CTTSCCCCCCCHHHHTTCCCTTCEEEEEGGG---GGSCCCHHHHHHHHHHHHHHHHT-TCEEEE-ECCTTGGGHHHHHHH
T ss_pred cccccccCccchhhhhccCCCCCEEEEECCc---ccCCCCHHHHHHHHHHHHHHHHC-CCEEEE-eCCCcHHHHHHHHHH
Confidence 776554321 4689999999763 24568999999999999999995 999999 999987777766655
Q ss_pred HHHhhhhh-HHHHHh---hcc-cchhhHHHHHhhhc--CCCcchHHHHHH-HHH--hCCChHHHHHHHHHHHHHHHHHHH
Q psy7558 375 WVSKEKDD-FCKMLY---DFK-GEAVWWKELIKLPL--GMCTITFSSILK-LID--MQLPLPSDQWAKEHTEILKTKLTE 444 (508)
Q Consensus 375 ~~~~~~~~-~~~~l~---~~~-~~~~~~~e~~~~~~--~~~~~~~~~~~~-l~~--~~~s~~~y~~a~~~r~~~~~~~~~ 444 (508)
++..+... +..+.. ... .....+.+.+.... .........+.. ... ......+|.++++.|+.+++++.+
T Consensus 305 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~ 384 (478)
T 3h0l_A 305 IAPSEASSNLARYDGVRYGYRAKEYKDIFEMYARTRDEGFGPEVKRRIMLGTFALSAGYYDAYYLKAQKVRRLITNDFLK 384 (478)
T ss_dssp HHHHHHHHHTTTCSSSSSSCCCSCCSSHHHHHHHHHHHHSCHHHHHHHHHHHHHTSTTTTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccHHHHHHHhhhhhcCHHHHHHHHhhchhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 44332110 110000 000 00112222222110 011111111111 001 223345789999999999999999
Q ss_pred HhcCCcEEEeCCCCCCCCCCCccccCC----CCchhhHHhhhhcCcceeEcccCCCCCCCeeEEEEcC
Q psy7558 445 LLGDNGVLVFPAAPESAPYHYATFFRP----YNFTYWALFNILDFPVTNVPVGLDGKGLPLGVQVIAS 508 (508)
Q Consensus 445 ~l~~~dvll~Pt~p~~Ap~~~~~~~~~----~~~~yt~l~N~lG~PaisvP~G~~~~GLPvGvQlvg~ 508 (508)
+|+++|+||+||+|.+||++++....+ ....||.+||++|+|+++||+|+ .+|||+||||||+
T Consensus 385 ~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGlQlvg~ 451 (478)
T 3h0l_A 385 AFEEVDVIASPTTPTLPFKFGERLENPIEMYLSDILTVPANLAGLPAISIPIAW-KDGLPVGGQLIGK 451 (478)
T ss_dssp HTTTCSEEEEESCSSSCCBTTTTSSSHHHHHGGGTTTHHHHHHTCCEEEEEEEE-ETTEEEEEEEEEC
T ss_pred HHhcCCEEEcCCCCCCCCCcccccCChHhhhhhhhhhhhhHhhCCCeEEEeCCC-CCCCCeEEEEECC
Confidence 999999999999999999998643221 12248999999999999999999 8999999999985
No 4
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=100.00 E-value=2.9e-97 Score=786.27 Aligned_cols=417 Identities=24% Similarity=0.334 Sum_probs=349.7
Q ss_pred cCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCcccEEEecChHHHHHHHHHHhHHHHccCCCCCCCCCCcceEeecCcC
Q psy7558 68 ESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSKESTA 147 (508)
Q Consensus 68 ~sa~~l~~~i~~g~~t~~evv~a~l~ri~~~n~~lna~~~~~~~~Al~~A~~~D~~~~~g~~l~~~PL~GvPi~vKD~~~ 147 (508)
|+++||+++|++|++|++||+++||+||+++|+.+|||++++ |+|+++|+++|++ .|||||||+|||+|+
T Consensus 1 ~~a~~l~~~~~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~-~~al~~A~~~d~~---------~pL~GvPi~vKD~~~ 70 (471)
T 3kfu_E 1 MLAHEIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLN-ERLLEEAEAVDPG---------LPLAGLVVAVKDNIA 70 (471)
T ss_dssp -CHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEEC-CTTTHHHHTSCCS---------CTTTTCEEEEETTBC
T ss_pred CcHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEEeC-HHHHHHHHhcCcc---------CCcCCCeEEEECCcc
Confidence 579999999999999999999999999999999999999999 9999999999853 499999999999999
Q ss_pred CCCcccccccccccCCCCCCcHHHHHHHHHcCCeEEEEeCccccC-CCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHh
Q psy7558 148 CKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGGEACLVS 226 (508)
Q Consensus 148 v~G~~tt~Gs~~~~~~~~~~da~~V~rLr~aGAIilgkTn~~E~~-~~~t~n~~~G~t~NP~d~~~t~GGSSgGsaaaVA 226 (508)
++|++||+||..++++++.+||++|+|||+||||++||||||||+ +.+|.|++||+|+||||++|+||||||||||+||
T Consensus 71 ~~G~~tt~Gs~~~~~~~~~~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVA 150 (471)
T 3kfu_E 71 TRGLRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALA 150 (471)
T ss_dssp CTTSCCCTTCSTTTTCCCSSCCHHHHHHHTTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHH
T ss_pred cCCccccccCHhHcCCCCCCChHHHHHHHHCCCEEEeecCcCchhcCCCCCCCCCCCcCCCCccCcCCCCCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred cCCCccccccccccccchhhhccCcccccCCCCcccCCCCCCCCCCCCCCceeecccCCCcchHHHHHHHhcCCCCCCCC
Q psy7558 227 ACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPAY 306 (508)
Q Consensus 227 ag~~~~aiGsD~gGSIRiPAa~cGv~G~KPT~G~vs~~G~~p~~~~~~~~~~~~GpmaR~v~Dl~~ll~vl~g~~~~d~~ 306 (508)
+|++++|+|||||||||+||+||||||||||+|+||+.|++|+++ ++|++|||||+|+|+++++++|+|+|+.|+.
T Consensus 151 ag~~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~----~~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~ 226 (471)
T 3kfu_E 151 ADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYAS----SLDQIGPMARSVRDLALLMDAAAGPDPLDAT 226 (471)
T ss_dssp TTSCSEEEEEESSSTTHHHHHHTTCEEEECCTTSSCCTTBCCSCT----TTCEEEEEESSHHHHHHHHHHHCSCCTTCTT
T ss_pred CCCCccccccCCCCccccChhhcCceeeeCCCCCccCCCCCCccc----ccCeecceeCCHHHHHHHHHHhcCCCccccc
Confidence 999999999999999999999999999999999999999999887 8999999999999999999999999887765
Q ss_pred CCCcc--------CcCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCeeeecCCCCchhhHHHHHHHHHHh
Q psy7558 307 NFDKS--------VDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIKQFRLGYDVWRYWVSK 378 (508)
Q Consensus 307 ~~~~~--------~~~~~lrIg~~~~~g~~~~~~v~~~v~~a~~~av~~L~~~lG~~V~~~v~lp~~~~~~~~~~~~~~~ 378 (508)
..+.+ .+++++||||+.++ + ..++++++++++++++.|+++ |++|++ +++|.+.+..+.|..++..
T Consensus 227 ~~~~~~~~~~~~~~~~~~lrIgv~~~~---~-~~~~p~v~~a~~~a~~~L~~~-G~~v~~-v~~p~~~~~~~~~~~~~~~ 300 (471)
T 3kfu_E 227 SLDLPPRFQEALEGPLPPLRLGVVREA---L-AGNSPGVERALEEALKVFREL-GLSVRE-VSWPSLPQALAAYYILAPA 300 (471)
T ss_dssp CCCCCCCTTCCSCCCCSSCEEEEEGGG---T-TTCCHHHHHHHHHHHHHHHTT-TCEEEE-ECCTTGGGHHHHHHHHHHH
T ss_pred ccCCCcchhhhhccCCCCCEEEEECCc---c-CCCCHHHHHHHHHHHHHHHHc-CCeeee-ecCccHHHHHHHHHHHHHH
Confidence 54322 14689999999763 2 578999999999999999995 999999 9999887777766554443
Q ss_pred hhhh-HHHHHh---hcccchhhHHHHHhhhcCCCcchHHHHHH-HHH------hCCChHHHHHHHHHHHHHHHHHHHHhc
Q psy7558 379 EKDD-FCKMLY---DFKGEAVWWKELIKLPLGMCTITFSSILK-LID------MQLPLPSDQWAKEHTEILKTKLTELLG 447 (508)
Q Consensus 379 ~~~~-~~~~l~---~~~~~~~~~~e~~~~~~~~~~~~~~~~~~-l~~------~~~s~~~y~~a~~~r~~~~~~~~~~l~ 447 (508)
+... +..+.. ........+.+.+...... . .+.+.. +.. ...+..+|.++++.|.++++++.++|+
T Consensus 301 e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~ 377 (471)
T 3kfu_E 301 EASSNLARYDGTLYGRRAAGEEVEGMMEATRAL--F-GLEVKRRVLVGTFVLSSGYYEAYYGRAQAFRRRLKAEAQALFR 377 (471)
T ss_dssp HHHHHGGGCSTTTTSCCCCCSSSHHHHHHHHTT--S-CHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhccccccchhhHHHHHHhhhhh--c-CHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2110 111100 0000001122222111110 1 022222 111 234456899999999999999999999
Q ss_pred CCcEEEeCCCCCCCCCCCcccc---CCCCchhhHHhhhhcCcceeEcccCCCCCCCeeEEEEcC
Q psy7558 448 DNGVLVFPAAPESAPYHYATFF---RPYNFTYWALFNILDFPVTNVPVGLDGKGLPLGVQVIAS 508 (508)
Q Consensus 448 ~~dvll~Pt~p~~Ap~~~~~~~---~~~~~~yt~l~N~lG~PaisvP~G~~~~GLPvGvQlvg~ 508 (508)
++|+||+||+|.+||++++... ......||.+||++|+|+++||+|+ .+|||+||||||+
T Consensus 378 ~~Dvll~Pt~~~~a~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGlQlvg~ 440 (471)
T 3kfu_E 378 EVDLLLLPTTPHPAFPFGARRDPLAMYREDLYTVGANLTGLPALSFPAGF-EGHLPVGLQLLAP 440 (471)
T ss_dssp TCSEEEEESCSSSCCBTTTTCSHHHHHGGGTTTHHHHHHCCCEEEEEEEE-ETTEEEEEEEECS
T ss_pred cCCEEEeCCcCCCCCccccccchHHHHHHhhhhhcchhhCCCeEEEeCCC-CCCCCeEEEEECC
Confidence 9999999999999999876321 0112348999999999999999999 9999999999985
No 5
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Probab=100.00 E-value=6.5e-97 Score=790.55 Aligned_cols=414 Identities=24% Similarity=0.345 Sum_probs=350.0
Q ss_pred hhcccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCcccEEEecChHHHHHHHHHHhHHHHccCCCCCCCCCCcceEee
Q psy7558 64 KIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSK 143 (508)
Q Consensus 64 ~l~~~sa~~l~~~i~~g~~t~~evv~a~l~ri~~~n~~lna~~~~~~~~Al~~A~~~D~~~~~g~~l~~~PL~GvPi~vK 143 (508)
++.. |+.||+++|++|++|++||+++||+||+++|+.+|||+++++|+|+++|++ | . ||||||||+||
T Consensus 5 ~~~~-~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~-d-------~---gpL~GvPi~vK 72 (493)
T 3a2q_A 5 DLWQ-DATAQAELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESEL-A-------S---GPFAGVPYLLK 72 (493)
T ss_dssp CTTS-CHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHH-C-------C---STTTTCEEEEE
T ss_pred hhhh-hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCeEEecCHHHHHHHhhh-c-------C---CCcCCcEEEEe
Confidence 4666 999999999999999999999999999999999999999999999999999 8 1 89999999999
Q ss_pred cCc-CCCCccccccccccc--CCCCCCcHHHHHHHHHcCCeEEEEeCccccC-CCCCCCCCCCCCCCCCCCCCCCCCCCh
Q psy7558 144 EST-ACKGLSNTLGLLARK--GKKADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSG 219 (508)
Q Consensus 144 D~~-~v~G~~tt~Gs~~~~--~~~~~~da~~V~rLr~aGAIilgkTn~~E~~-~~~t~n~~~G~t~NP~d~~~t~GGSSg 219 (508)
|+| +++|++||+||..++ ++++.+||++|+|||+|||||+||||||||+ +.+|+|++||+|+||||++|+||||||
T Consensus 73 D~~~~v~G~~Tt~Gs~~~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSg 152 (493)
T 3a2q_A 73 DLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQVTTEPEAWGATRNPWNLGRSVGGSSG 152 (493)
T ss_dssp SSSSCCTTSBCCTTCHHHHHHTCBCSSCCHHHHHHHHHTCEEEEEECCSGGGCSSSCCCTTTCCCCBTTBTTBCCCSSSH
T ss_pred cCCcCcCCCcccccChhhhhcCCCCCCCHHHHHHHHHCCCceEEEcChhhhhcCCCCCCCCCCCCCCCCCCCCCCCcCcH
Confidence 999 999999999999999 9999999999999999999999999999999 999999999999999999999999999
Q ss_pred hhHHHHhcCCCccccccccccccchhhhccCcccccCCCCcccCCCC--C-CCCCCCCCCceeecccCCCcchHHHHHHH
Q psy7558 220 GEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGI--Y-GRDGKEGKSMLAAGPIVKHAEDLLPYSKC 296 (508)
Q Consensus 220 GsaaaVAag~~~~aiGsD~gGSIRiPAa~cGv~G~KPT~G~vs~~G~--~-p~~~~~~~~~~~~GpmaR~v~Dl~~ll~v 296 (508)
||||+||+|++++|+|||||||||+||+||||||||||+|+||+.|+ . |.++ ++|++|||||+|+|+++++++
T Consensus 153 GsAAAVAaG~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~g~~~~~~~~~----sld~~Gp~arsv~D~a~~l~~ 228 (493)
T 3a2q_A 153 GSGAAVAAALSPVAHGNDAAGAVRIPASVCGVVGLKPTRGRISPGPLVTDSDNVA----GAAHEGLFARSVRDIAALLDV 228 (493)
T ss_dssp HHHHHHHTTSCSEEEEEESSSTTHHHHHHHTSEEEECSTTSBCCCSSCCHHHHHH----TTCEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHcCCCceeeecCCCcccccchhhcCcceEEcCCCccCCCCCcccccccc----cCceecCccCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987 4 6555 899999999999999999999
Q ss_pred hcCCCCCCCCCCCcc---------CcCCCcEEEEECCCCCCC-CCCCCHHHHHHHHHHHHHHHhcCCCeeeecCCCCchh
Q psy7558 297 LILPDKLPAYNFDKS---------VDLAKLKVFYVEEPGDMK-VSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIKQFR 366 (508)
Q Consensus 297 l~g~~~~d~~~~~~~---------~~~~~lrIg~~~~~g~~~-~~~v~~~v~~a~~~av~~L~~~lG~~V~~~v~lp~~~ 366 (508)
|+|+++.|+...+.+ .+++++||||+.+++ + ..+++++++++++++++.|+++ |++|++ +++|.+.
T Consensus 229 l~g~d~~d~~~~~~p~~~~~~~~~~~~~~lrIgv~~~~~--~~~~~~~~~v~~a~~~a~~~L~~~-G~~v~~-~~~~~~~ 304 (493)
T 3a2q_A 229 VSGHRPGDTFCAPTASRPYAQGISENPGSLRVGVLTHNP--VGDFALDPECAAAARGAAAALAAL-GHDVND-AYPEALG 304 (493)
T ss_dssp HBSCCTTCSCCCCCCSSCHHHHTTSCCCSCEEEECCSCT--TCSSCCCHHHHHHHHHHHHHHHHT-TCEEEE-CCCGGGG
T ss_pred HcCCCCCCcccccCCCcchhhhcccCCCCCEEEEECCcc--ccCCCCCHHHHHHHHHHHHHHHHC-CCEEEE-eCCCccC
Confidence 999988776544322 136889999997643 2 3568999999999999999995 999999 9987444
Q ss_pred --hHHHHHHHHHHhhhhhHHHHHhhcccchhhHHHHHhhhcCCCcchHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHH
Q psy7558 367 --LGYDVWRYWVSKEKDDFCKMLYDFKGEAVWWKELIKLPLGMCTITFSSILKLID--MQLPLPSDQWAKEHTEILKTKL 442 (508)
Q Consensus 367 --~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~--~~~s~~~y~~a~~~r~~~~~~~ 442 (508)
.....+..++..+.. ..+ ..+.+.+.... ......+.+...++ ..++..+|.++++.|+++++++
T Consensus 305 ~~~~~~~~~~~~~~e~~---~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~ 373 (493)
T 3a2q_A 305 DRSFLKDYSTICDVAIA---REI-------ERNGELIGRPL-TEDDVEWTSWEMVKRADQVTGRAFAACVDELRYYAGKV 373 (493)
T ss_dssp CCTHHHHHHHHHHHHHH---HHH-------HHHHHHHTSCC-CTTTSCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHH-------HHHHHHhcCcc-ChhhcCHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHH
Confidence 344444433332211 000 01111111000 01111123333333 7889999999999999999999
Q ss_pred HHHh-cCCcEEEeCCCCCCCCCCCccccC-C--------------C-CchhhHHhhhhcCcceeEcccCCCCCCCeeEEE
Q psy7558 443 TELL-GDNGVLVFPAAPESAPYHYATFFR-P--------------Y-NFTYWALFNILDFPVTNVPVGLDGKGLPLGVQV 505 (508)
Q Consensus 443 ~~~l-~~~dvll~Pt~p~~Ap~~~~~~~~-~--------------~-~~~yt~l~N~lG~PaisvP~G~~~~GLPvGvQl 505 (508)
.++| +++|+||+||+|.+||++++.... . . ...||.+||++|+|+++||+|++.+|||+||||
T Consensus 374 ~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGvQl 453 (493)
T 3a2q_A 374 ERWWEAGWDLLILPTVTRQTPEIGELMLAKGTDLEGRQSAFISGSLQMLAFTVPFNVSGQPAISLPIGMSSDGMPIGVQI 453 (493)
T ss_dssp HHHHHTTCCEEEEESCSSCCCBTTTTCCCTTCCCCSSCGGGSHHHHHHHTTTTHHHHHCCCEEEEEEEECTTSCEEEEEE
T ss_pred HHHHhcCCCEEEcCCCCCCCCCCcccccccccccccccchhhhhhhhhhcccccccccCCCceeccCCcCCCCCCeEEEE
Confidence 9999 999999999999999998764311 0 0 135899999999999999999989999999999
Q ss_pred EcC
Q psy7558 506 IAS 508 (508)
Q Consensus 506 vg~ 508 (508)
||+
T Consensus 454 vg~ 456 (493)
T 3a2q_A 454 VAA 456 (493)
T ss_dssp EES
T ss_pred ecC
Confidence 985
No 6
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*
Probab=100.00 E-value=5.6e-97 Score=792.36 Aligned_cols=426 Identities=22% Similarity=0.282 Sum_probs=350.1
Q ss_pred hhcccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHC---CcccEEEecChHHHHHHHHHHhHHHHccCCCCCCCCCCcce
Q psy7558 64 KIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVN---PYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPF 140 (508)
Q Consensus 64 ~l~~~sa~~l~~~i~~g~~t~~evv~a~l~ri~~~n---~~lna~~~~~~~~Al~~A~~~D~~~~~g~~l~~~PL~GvPi 140 (508)
++..+|+.+|+++|++|++|++||+++||+||+++| |.+|||+++++| |+++|+++|+++++|+. .||||||||
T Consensus 7 ~~~~~~~~~l~~~l~~g~~s~~el~~a~l~ri~~~~~~~~~lna~~~~~~~-Al~~A~~~d~~~~~g~~--~gpL~GvPi 83 (503)
T 1m22_A 7 PYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD-ALKEAAERDRERRDGRL--RGPLHGIPL 83 (503)
T ss_dssp TTTTCCHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTT-HHHHHHHHHHHHHTTCC--CSTTTTCEE
T ss_pred CcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceEEEEECCHH-HHHHHHHHHHHHHcCCC--CCCcCCcee
Confidence 567789999999999999999999999999999999 999999999988 99999999999998877 599999999
Q ss_pred EeecCcCCCCcccccccccccCCCCCCcHHHHHHHHHcCCeEEEEeCccccC-C-----CCCCCCCCCCCCCCCCCCCCC
Q psy7558 141 TSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-W-----SESRNMVYGQSNNPYNLCRTT 214 (508)
Q Consensus 141 ~vKD~~~v~G~~tt~Gs~~~~~~~~~~da~~V~rLr~aGAIilgkTn~~E~~-~-----~~t~n~~~G~t~NP~d~~~t~ 214 (508)
+|||||+++|++||+||..++++++ +||++|+|||+|||||+||||||||+ + .+|+|++||+|+||||++|+|
T Consensus 84 ~vKD~~~v~G~~Tt~Gs~~~~~~~~-~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~~~n~~~G~t~NP~~~~~~p 162 (503)
T 1m22_A 84 LLKDNINAAPMATSAGSLALQGFRP-DDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSP 162 (503)
T ss_dssp EEETTBCCTTSCCCTTCGGGTTCCC-CCCHHHHHHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTSTTBCC
T ss_pred EeecccccCCCCcCCCCHhhcCCCC-CCcHHHHHHHHCCCEEEeccCHHHHhcccCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 9999999999999999999999999 99999999999999999999999998 3 478899999999999999999
Q ss_pred CCCChhhHHHHhcCCCccccccccccccchhhhccCcccccCCCCcccCCCCCCCCCCCCCCceeecccCCCcchHHHHH
Q psy7558 215 GASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYS 294 (508)
Q Consensus 215 GGSSgGsaaaVAag~~~~aiGsD~gGSIRiPAa~cGv~G~KPT~G~vs~~G~~p~~~~~~~~~~~~GpmaR~v~Dl~~ll 294 (508)
||||||||||||+|++++|+|||||||||+||+||||||||||+|+||+.|++|+++ ++|++|||||+|+|+++++
T Consensus 163 GGSSgGsAaAVAag~~~~alGtDtgGSIRiPAa~cGvvGlKPT~Grvs~~G~~p~~~----sld~~Gp~arsv~D~a~~l 238 (503)
T 1m22_A 163 CGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISF----SQDTAGPMARSVADAAAVL 238 (503)
T ss_dssp CSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCT----TTCEEEEEESSHHHHHHHH
T ss_pred CccHHHHHHHHHcCCCceeeecCCCchhhhhHHHhCceEEECCCCCcCCCCcCCccC----CCCeeCcccCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999887 8999999999999999999
Q ss_pred HHhcCCCCCCCCCCCcc-------------CcCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCeeeecCC
Q psy7558 295 KCLILPDKLPAYNFDKS-------------VDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSH 361 (508)
Q Consensus 295 ~vl~g~~~~d~~~~~~~-------------~~~~~lrIg~~~~~g~~~~~~v~~~v~~a~~~av~~L~~~lG~~V~~~v~ 361 (508)
++|+|+|+.|+...+.+ .+++++||||+.++ + .++++++++++++++.|+++ |++|++ ++
T Consensus 239 ~vl~g~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~lrIgv~~~~----~-~~~~~v~~a~~~a~~~L~~~-G~~v~~-~~ 311 (503)
T 1m22_A 239 TAIAGRDDADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTP----L-LKYRGMPPLIEQAATELRRA-GAVVVP-VE 311 (503)
T ss_dssp HHHCCCCTTCGGGGGCTTCCCCCGGGGCCTTTTTTCEEEEECSG----G-GGSTTHHHHHHHHHHHHHHT-TCEEEE-EC
T ss_pred HHHcCCCCCCccccccccccccchhhhccccCCCCCEEEEECcc----c-cCCHHHHHHHHHHHHHHHHc-CCEEEE-eC
Confidence 99999988665433221 13678999999752 2 37999999999999999996 999999 99
Q ss_pred CCchhhHHHHHHHHHHhhhh-hHHHHHhhcccchhhHHHHHhhhcCC-----CcchHHHHHH-HHH-hCCChHHHHHHHH
Q psy7558 362 IKQFRLGYDVWRYWVSKEKD-DFCKMLYDFKGEAVWWKELIKLPLGM-----CTITFSSILK-LID-MQLPLPSDQWAKE 433 (508)
Q Consensus 362 lp~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~e~~~~~~~~-----~~~~~~~~~~-l~~-~~~s~~~y~~a~~ 433 (508)
+|.+.+....+...+..+.. .+..++.........+.+++.+.... ..+. +.+.. +.. ..++..+|.++++
T Consensus 312 ~p~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~ 390 (503)
T 1m22_A 312 LPNQGAWAEAERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQELGLFG-QELLVEADATAGLADPAYIRARS 390 (503)
T ss_dssp CTTTTTTHHHHHHHHHHHHHHHHHHHHHHTTCSCCSHHHHHHHHHHTHHHHSSSSC-CHHHHHHHTCCCTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHhhhcchhcccccC-HHHHHHHHhcCCCCHHHHHHHHH
Confidence 88765333333333322211 13333322111111222222211100 0011 22222 222 4678899999999
Q ss_pred HHHHHHHH--HHHHhcC--CcEEEeCCCCCCCCCCCccccCCCCchhhHHhhhhcCcceeEcccCCCCCCCeeEEEEcC
Q psy7558 434 HTEILKTK--LTELLGD--NGVLVFPAAPESAPYHYATFFRPYNFTYWALFNILDFPVTNVPVGLDGKGLPLGVQVIAS 508 (508)
Q Consensus 434 ~r~~~~~~--~~~~l~~--~dvll~Pt~p~~Ap~~~~~~~~~~~~~yt~l~N~lG~PaisvP~G~~~~GLPvGvQlvg~ 508 (508)
.+++++++ +.++|++ +|+||+||+ .++|+++... ......||.+||++|+|+++||+|++ +|||+||||||+
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~D~ll~Pt~-~~a~~~~~~~-~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvGvqlvg~ 466 (503)
T 1m22_A 391 DARRLAGPEGIDAALAAHQLDALVAPTT-GVAWPIRSEG-DDFPGESYSAAAVAGYPSLTVPMGQI-DGLPVGLLFMGT 466 (503)
T ss_dssp HHHHHHTTTTHHHHHHHTTCSEEEEECC-CCCCBTTC----CCTTCCHHHHHHHTCCEEEEEEEEE-TTEEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHhhcCCCEEEeCCC-ccCccccccc-CcccccccccchhhCCCeEEeccccC-CCCCeEEEEECC
Confidence 98888776 9999975 899999999 5677765221 11225689999999999999999995 899999999985
No 7
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*
Probab=100.00 E-value=4.3e-94 Score=774.17 Aligned_cols=430 Identities=24% Similarity=0.335 Sum_probs=352.9
Q ss_pred CCCcc-chhcccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCcccEEEecChHHHHHHHHHHhHHHHccCCCCCCCCC
Q psy7558 58 LPPVK-NKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYL 136 (508)
Q Consensus 58 ~p~~~-~~l~~~sa~~l~~~i~~g~~t~~evv~a~l~ri~~~n~~lna~~~~~~~~Al~~A~~~D~~~~~g~~l~~~PL~ 136 (508)
.|+++ ++|+.+|+.+|+++|++|++|++||+++|++||+++|+.+||++++.++ ++++|+++|+ .||||
T Consensus 60 ~~~~~~~~i~~~~~~~l~~~l~~g~~s~~ev~~a~l~ri~~~~~~~na~~~~~~~-a~~~a~~~~~---------~gpL~ 129 (573)
T 3ppm_A 60 NPDLDSEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTD-CETQLSQAPR---------QGLLY 129 (573)
T ss_dssp CTTCCHHHHHHSCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTT-HHHHHHHCCT---------TCTTT
T ss_pred CCCCChhhhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCEEEEECHH-HHHHHHhhhh---------cCCcC
Confidence 46654 7799999999999999999999999999999999999999999998765 5666665542 39999
Q ss_pred CcceEeecCcCCCCcccccccccccCCCCCCcHHHHHHHHHcCCeEEEEeCccccC-CCCCCCCCCCCCCCCCCCCCCCC
Q psy7558 137 GVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTG 215 (508)
Q Consensus 137 GvPi~vKD~~~v~G~~tt~Gs~~~~~~~~~~da~~V~rLr~aGAIilgkTn~~E~~-~~~t~n~~~G~t~NP~d~~~t~G 215 (508)
||||+|||+|+++|++||+||..+.++++.+||++|++||+||||++||||||||+ +++|.|++||+|+||||++|+||
T Consensus 130 GvPi~vKD~~~~~G~~tt~Gs~~~~~~~~~~da~vV~~L~~aGAv~~gKTn~pe~~~~~~~~n~~~G~t~NP~~~~~~~G 209 (573)
T 3ppm_A 130 GVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPG 209 (573)
T ss_dssp TCEEEEETTBCCBTCCCCTTCGGGTTCCBSSCCHHHHHHHHTTCEEEEEECCCTTSCSSSCEETTTEECCCTTCTTBCCC
T ss_pred CCeEEEEcccCCCCCCcCCcChhhcCCCCCcchHHHHHHHHCCCEEEEecCCccccccCCCCCCCCCCcCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred CCChhhHHHHhcCCCccccccccccccchhhhccCcccccCCCCcccCCCCCCCCCCCCCCceeecccCCCcchHHHHHH
Q psy7558 216 ASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSK 295 (508)
Q Consensus 216 GSSgGsaaaVAag~~~~aiGsD~gGSIRiPAa~cGv~G~KPT~G~vs~~G~~p~~~~~~~~~~~~GpmaR~v~Dl~~ll~ 295 (508)
||||||||+||+|++++|+|||||||||+||+||||||||||+||||+.|++|.+.+....+|++|||||+|+|++++++
T Consensus 210 GSSgGsaaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~~~~~~~~~~~~~~Gp~arsv~D~a~~l~ 289 (573)
T 3ppm_A 210 GSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLK 289 (573)
T ss_dssp SSSHHHHHHHHTTSCSEEEEEESSSTTHHHHHHHTCEEEECCGGGSCCTTBCCSCCSCCSSCCEEEEEESSHHHHHHHHH
T ss_pred CCCchHHHHHHcCCCcEEEecCCCcchhhhhHHhCeeEEeCCCCcccCCCCCCcccccCcccccccceeCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999875333369999999999999999999
Q ss_pred HhcCCCC--CCCCCCCcc------CcCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCeeeecCCCCchhh
Q psy7558 296 CLILPDK--LPAYNFDKS------VDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIKQFRL 367 (508)
Q Consensus 296 vl~g~~~--~d~~~~~~~------~~~~~lrIg~~~~~g~~~~~~v~~~v~~a~~~av~~L~~~lG~~V~~~v~lp~~~~ 367 (508)
+|+|.++ .|+...+.+ ...+++||||+.+++ +..++|+++++++++++.|+++ ||+|++ +++|.+.+
T Consensus 290 ~l~~~d~~~~d~~~~~~~~~~~~~~~~~~lrigv~~~~~---~~~~~p~v~~a~~~a~~~L~~~-G~~v~~-~~~p~~~~ 364 (573)
T 3ppm_A 290 ALLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYETDN---YTMPSPAMRRALIETKQRLEAA-GHTLIP-FLPNNIPY 364 (573)
T ss_dssp HHSSHHHHHHCTTSCCCCCCHHHHTCCCCCEEEECSCCS---SSCCCHHHHHHHHHHHHHHHHT-TCEEEE-CCCTTHHH
T ss_pred HHhcccccccCCCCCccccchhhcccCCCCEEEEEcccC---CCCCCHHHHHHHHHHHHHHHHC-CCEEEE-ecCccHHH
Confidence 9998652 232221111 246899999998765 4567999999999999999996 999999 99998877
Q ss_pred HHHHHH-HHHHhhhhh-HHHHHhhcccch--------------hhHHHHHhhhcCCCcchHHHHHHHHH--hCCChHHHH
Q psy7558 368 GYDVWR-YWVSKEKDD-FCKMLYDFKGEA--------------VWWKELIKLPLGMCTITFSSILKLID--MQLPLPSDQ 429 (508)
Q Consensus 368 ~~~~~~-~~~~~~~~~-~~~~l~~~~~~~--------------~~~~e~~~~~~~~~~~~~~~~~~l~~--~~~s~~~y~ 429 (508)
....++ ..+..+++. +...+. ++.. ..+..++.+....- .+.+..+++ ...+..+|+
T Consensus 365 ~~~~~~~~~~~~dg~~~~~~~~~--~e~~~p~~~~~~~~~~lp~~l~~~~~~~~~~~---~p~~~~~~~~~~~~s~~e~~ 439 (573)
T 3ppm_A 365 ALEVLSTGGLFSDGGRSFLQNFK--GDFVDPCLGDLILILRLPSWFKRLLSLLLKPL---FPRLAAFLNNMRPRSAEKLW 439 (573)
T ss_dssp HHHTHHHHHHTTBTTHHHHGGGT--TSCCCGGGTTHHHHHTSCHHHHHHHHHHHTTT---CHHHHHHHHHTSBCBHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHhc--cCcccHHHHHHhhhccchHHHHHHHHHHhhhc---chHHHHHHhhcccccHHHHH
Confidence 665333 344333332 222221 1100 01111222221111 122222333 567889999
Q ss_pred HHHHHHHHHHHHHHHHhc--CCcEEEeCCCCCCCCCCCccccCCCCchhhHHhhhhcCcceeEcccCC------------
Q psy7558 430 WAKEHTEILKTKLTELLG--DNGVLVFPAAPESAPYHYATFFRPYNFTYWALFNILDFPVTNVPVGLD------------ 495 (508)
Q Consensus 430 ~a~~~r~~~~~~~~~~l~--~~dvll~Pt~p~~Ap~~~~~~~~~~~~~yt~l~N~lG~PaisvP~G~~------------ 495 (508)
++..++++++++|.+.|. ++|+||+|+ +.+|++|+.+........||.+||++|+|+++||+|+.
T Consensus 440 ~~~~~r~~~r~~~~~~w~~~~lDaLL~Pt-~~pA~~h~~~~~~~~~~~YT~l~NLLDyPA~vVPvg~v~~~~d~~~~~~~ 518 (573)
T 3ppm_A 440 KLQHEIEMYRQSVIAQWKAMNLDVLLTPM-LGPALDLNTPGRATGAVSYTMLYNCLDFPAGVVPVTTVTAEDDAQMELYK 518 (573)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEEEEEC-CCSCCBTTCGGGCGGGGHHHHHHHHTTCCEEEEEEEECCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCEeeCCC-CCCCcCCccccccccccchhhhhHhhCCCeEEEecccccccccccccccc
Confidence 999999999999999995 589999999 56889988644333457899999999999999999963
Q ss_pred -----------------CCCCCeeEEEEcC
Q psy7558 496 -----------------GKGLPLGVQVIAS 508 (508)
Q Consensus 496 -----------------~~GLPvGvQlvg~ 508 (508)
.+||||||||||+
T Consensus 519 ~~~~~~~d~~~~~~~~~~~GlPVgVQiVGr 548 (573)
T 3ppm_A 519 GYFGDIWDIILKKAMKNSVGLPVAVQCVAL 548 (573)
T ss_dssp CSSCSHHHHHHHHHTCSCTTCEEEEEEECC
T ss_pred cccchhhhhhhhhhhhccCCCceEEEEeCC
Confidence 3799999999985
No 8
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*
Probab=100.00 E-value=1.4e-95 Score=777.08 Aligned_cols=418 Identities=21% Similarity=0.272 Sum_probs=340.2
Q ss_pred ccchhcccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCcccEEEecChHHHHHHHHHHhHHHHccCCCCCCCCCCcce
Q psy7558 61 VKNKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPF 140 (508)
Q Consensus 61 ~~~~l~~~sa~~l~~~i~~g~~t~~evv~a~l~ri~~~n~~lna~~~~~~~~Al~~A~~~D~~~~~g~~l~~~PL~GvPi 140 (508)
++.++..+|+.|| |++|++|++||+++||+||+++|+.+|||+++++|+|+ |+ . ||||||||
T Consensus 3 ~~~~~~~~s~~~l---i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~al------d~------~---gpL~GvPi 64 (476)
T 2gi3_A 3 IDLDFRKLTIEEC---LKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSV------EK------K---GKFWGIPV 64 (476)
T ss_dssp SCSCGGGCCHHHH---TTSCHHHHTTHHHHHHHHHHHHHHHHCCEEEECCCCCC------CC------C---STTTTCEE
T ss_pred CccccccCCHHHH---HHcCCCCHHHHHHHHHHHHHHhCCceeEEEecChhhhh------hc------c---CCcCCceE
Confidence 3456788899999 99999999999999999999999999999999998887 32 1 89999999
Q ss_pred EeecCcCCCCcccccccccccCCCCCCcHHHHHHHHHcCCeEEEEeCccccC-CCCCCCCCCCCCCCCCCCCCCCCCCCh
Q psy7558 141 TSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSG 219 (508)
Q Consensus 141 ~vKD~~~v~G~~tt~Gs~~~~~~~~~~da~~V~rLr~aGAIilgkTn~~E~~-~~~t~n~~~G~t~NP~d~~~t~GGSSg 219 (508)
+|||+|+++|++||+||..++++++.+||++|+|||+|||||+||||||||+ +.+|.|++||+|+||||+.|+||||||
T Consensus 65 ~vKD~~~v~G~~Tt~Gs~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSg 144 (476)
T 2gi3_A 65 AIKDNILTLGMRTTCASRILENYESVFDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSG 144 (476)
T ss_dssp EEETTBCCSSSCCCTTCGGGTTCCCCSCCHHHHHHHHHTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSH
T ss_pred EEEcCccCCCCccCccChhhcCCCCCCChHHHHHHHHCCCEEEEecCchhhhcCCCCCCCCCCCCCCCCCCCCCCCcchH
Confidence 9999999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred hhHHHHhcCCCccccccccccccchhhhccCcccccCCCCcccCCCCCCCCCCCCCCceeecccCCCcchHHHHHHHhcC
Q psy7558 220 GEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLIL 299 (508)
Q Consensus 220 GsaaaVAag~~~~aiGsD~gGSIRiPAa~cGv~G~KPT~G~vs~~G~~p~~~~~~~~~~~~GpmaR~v~Dl~~ll~vl~g 299 (508)
|||||||+|++++|+|||||||||+||+||||||||||+|+||+.|++|+++ ++|++|||||+|+|+++++++|+|
T Consensus 145 GsAaAVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~p~~~----sld~~Gp~arsv~D~a~~l~~l~g 220 (476)
T 2gi3_A 145 GSAAAVSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFAS----SLDQIGPITKTVRDAAILMEIISG 220 (476)
T ss_dssp HHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECCTTSBCCTTBCCSCT----TTCEEEEEESSHHHHHHHHHHHBS
T ss_pred HHHHHHHcCCCceEeecCCCchhhhhHHHcCCeEEeCCCCcCCCCCCCCccc----CCCeeeeeeCCHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999987 999999999999999999999999
Q ss_pred CCCCCCCCCCccC--------cCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCeeeecCCCCchhhHHHH
Q psy7558 300 PDKLPAYNFDKSV--------DLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIKQFRLGYDV 371 (508)
Q Consensus 300 ~~~~d~~~~~~~~--------~~~~lrIg~~~~~g~~~~~~v~~~v~~a~~~av~~L~~~lG~~V~~~v~lp~~~~~~~~ 371 (508)
+|+.|+...+.+. +++++||||+.+. +...++++++++++++++.|+++ |++|++ +++|.+......
T Consensus 221 ~d~~d~~~~~~p~~~~~~~~~~~~~lrig~~~~~---~~~~~~~~v~~a~~~a~~~L~~~-G~~v~~-~~~p~~~~~~~~ 295 (476)
T 2gi3_A 221 RDENDATTVNRKVDFLSEIEEGVSGMKFAVPEEI---YEHDIEEGVSERFEEALKLLERL-GAKVER-VKIPHIKYSVAT 295 (476)
T ss_dssp CBTTBTTCCSCCCCSSTTTTSCCTTCEEEEEGGG---GGSCCCHHHHHHHHHHHHHHHHT-TCEEEE-ECCTTGGGHHHH
T ss_pred CCCCCccccCCCcchhhhhhcCCCCCEEEEECcc---ccCCCCHHHHHHHHHHHHHHHHC-CCEEEE-eCCCchHHHHHH
Confidence 9886665433221 4678999999763 23568999999999999999995 999999 999877666555
Q ss_pred HHHHHHhhhhh-HHHHHhh-cccch--hhHHHHHhhhcCCCcchHHHHHH-HHH-h-----CCChHHHHHHHHHHHHHHH
Q psy7558 372 WRYWVSKEKDD-FCKMLYD-FKGEA--VWWKELIKLPLGMCTITFSSILK-LID-M-----QLPLPSDQWAKEHTEILKT 440 (508)
Q Consensus 372 ~~~~~~~~~~~-~~~~l~~-~~~~~--~~~~e~~~~~~~~~~~~~~~~~~-l~~-~-----~~s~~~y~~a~~~r~~~~~ 440 (508)
|..++..+... +..+... ..... ..+.+.+... ......+.+.. +.. . .....+|.++++.|+++++
T Consensus 296 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~ 373 (476)
T 2gi3_A 296 YYVIAPAEASSNLARFDGVKYGLRIKEKGLREMYMKT--RNVGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISD 373 (476)
T ss_dssp HHHHHHHHHHTC------------------------C--CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccccccccccHHHHHHhh--hhhhcCHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHH
Confidence 54443322111 1111100 00000 0111111110 11111122222 111 1 1223478999999999999
Q ss_pred HHHHHhcCCcEEEeCCCCCCCCCCCccc---cCCCCchhhHHhhhhcCcceeEcccCCCCCCCeeEEEEcC
Q psy7558 441 KLTELLGDNGVLVFPAAPESAPYHYATF---FRPYNFTYWALFNILDFPVTNVPVGLDGKGLPLGVQVIAS 508 (508)
Q Consensus 441 ~~~~~l~~~dvll~Pt~p~~Ap~~~~~~---~~~~~~~yt~l~N~lG~PaisvP~G~~~~GLPvGvQlvg~ 508 (508)
++.++|+++|+||+||+|.+||++++.. .......||.+||++|+|+++||+|++ +|||+||||||+
T Consensus 374 ~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvGvqlvg~ 443 (476)
T 2gi3_A 374 ELNEVLSQYDAILTPTSPVTAFKIGEIKDPLTYYLMDIFTIPANLAGLPAISVPFGFS-NNLPVGVQVIGR 443 (476)
T ss_dssp HHHHHHHHSSEEEEESCSSCCCBTTTCCCHHHHHTTTTTTHHHHHHTCCEEEEEEEEE-TTEEEEEEEECC
T ss_pred HHHHHHhcCCEEEeCCCCCCCCcccccccchhhhhccceeccccccCCceEEEecccC-CCCCeEEEEEcC
Confidence 9999999999999999999999987611 011234689999999999999999995 899999999985
No 9
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Probab=100.00 E-value=1.6e-93 Score=747.18 Aligned_cols=387 Identities=21% Similarity=0.232 Sum_probs=328.8
Q ss_pred cCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCcccEEEecChHHHHHHHHHHhHHHHccCCCCCCCCCCcceEeecCcC
Q psy7558 68 ESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSKESTA 147 (508)
Q Consensus 68 ~sa~~l~~~i~~g~~t~~evv~a~l~ri~~~n~~lna~~~~~~~~Al~~A~~~D~~~~~g~~l~~~PL~GvPi~vKD~~~ 147 (508)
+|+.+|+++|++|++|++||+++||+||+++|+.+|||+++++|+| + +. .||||||||+|||+|+
T Consensus 2 ~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~a-~------------~~--~gpL~GvPi~vKD~~~ 66 (414)
T 1o9p_A 2 ISLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSAR-A------------QA--SGPLRGIAVGIKDIID 66 (414)
T ss_dssp CCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTCC-C------------CS--SSTTTTCEEEEETTBC
T ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCccccEEEEeCHHHh-c------------cc--CCCcCCCEEEEEcccc
Confidence 5899999999999999999999999999999999999999998877 2 22 4999999999999999
Q ss_pred CCCcccccccccccCCCCCCcHHHHHHHHHcCCeEEEEeCccccCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHhc
Q psy7558 148 CKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELLWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSA 227 (508)
Q Consensus 148 v~G~~tt~Gs~~~~~~~~~~da~~V~rLr~aGAIilgkTn~~E~~~~~t~n~~~G~t~NP~d~~~t~GGSSgGsaaaVAa 227 (508)
++|++||+||..++++++.+||++|+|||+||||++||||||||+. .|+ |+|+||||++|+||||||||||+||+
T Consensus 67 v~G~~tt~Gs~~~~~~~~~~dA~~V~rL~~aGAii~GKTn~~Efa~---~n~--G~t~NP~~~~~~pGGSSgGsAaaVAa 141 (414)
T 1o9p_A 67 TANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFAS---RDP--TATLNPHNTGHSPGGASSGSAAAVGA 141 (414)
T ss_dssp CSSSCCCTTSGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCCGGGS---SCC--CSCCBTTBTTBCCCSSSHHHHHHHHT
T ss_pred cCCcccCcCCHhhccCCCCCCHHHHHHHHHCCCEEEEecCCchhhc---CCC--CCCCCCCCCCCCCCcchHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999994 455 99999999999999999999999999
Q ss_pred CCCccccccccccccchhhhccCcccccCCCCcccCCCCCCCCCCCCCCceeecccCCCcchHHHHHHHhcCCCCCCCCC
Q psy7558 228 CGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPAYN 307 (508)
Q Consensus 228 g~~~~aiGsD~gGSIRiPAa~cGv~G~KPT~G~vs~~G~~p~~~~~~~~~~~~GpmaR~v~Dl~~ll~vl~g~~~~d~~~ 307 (508)
|++++|+|||||||||+||+||||||||||+|+||+.|++|+++ ++|++|||||+|+|+++++++|.|++. +.
T Consensus 142 g~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~~~~~----s~d~~Gp~arsv~D~a~~~~~l~g~~~--~~- 214 (414)
T 1o9p_A 142 GMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSW----ALDTVGLFGARAEDLARGLLAMTGRSE--FS- 214 (414)
T ss_dssp TSCSEEEEEESSSTTHHHHHHHTCEEEECSTTSSCCTTBCCSCT----TTCEEEEEESSHHHHHHHHHHHHCCGG--GS-
T ss_pred CCCceEEeeCCchhhhHhHHHhCCeeEECCCCCCCCCCCCCCCC----ccCeeccccCCHHHHHHHHHHhcCCCc--cc-
Confidence 99999999999999999999999999999999999999999887 999999999999999999999999752 11
Q ss_pred CCccCcCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCeeeecCCCCch-hhHHHHHHHHHHhhhhh-HHH
Q psy7558 308 FDKSVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIKQF-RLGYDVWRYWVSKEKDD-FCK 385 (508)
Q Consensus 308 ~~~~~~~~~lrIg~~~~~g~~~~~~v~~~v~~a~~~av~~L~~~lG~~V~~~v~lp~~-~~~~~~~~~~~~~~~~~-~~~ 385 (508)
.+.+++++||||+.+++ +..++++++++++++++.|+++ |++|++ +++|.. ......+..++..+... +..
T Consensus 215 --~~~~~~~lrig~~~~~~---~~~~~~~v~~a~~~a~~~L~~~-G~~v~~-~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 287 (414)
T 1o9p_A 215 --GIVPAKAPRIGVVRQEF---AGAVEPAAEQGLQAAIKAAERA-GASVQA-IDLPEAVHEAWRIHPIIQDFEAHRALAW 287 (414)
T ss_dssp --SCCCCSSCEEEECCCGG---GCCCCHHHHHHHHHHHHHHHHT-TCEEEE-CCCCHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred --cccCCCCCEEEEECccc---cCCCCHHHHHHHHHHHHHHHHC-CCEEEE-ecCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 12246889999987653 4678999999999999999995 999999 998753 22222222222222110 111
Q ss_pred HHhhcccchhhHHHHHhhhcCCCcchHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCCC
Q psy7558 386 MLYDFKGEAVWWKELIKLPLGMCTITFSSILKLID--MQLPLPSDQWAKEHTEILKTKLTELLGDNGVLVFPAAPESAPY 463 (508)
Q Consensus 386 ~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~--~~~s~~~y~~a~~~r~~~~~~~~~~l~~~dvll~Pt~p~~Ap~ 463 (508)
++ +. ......+.+...++ ..++..+|.++++.|+++++++.++|+++|+||+||+|.+||+
T Consensus 288 ~~--------------~~---~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~ 350 (414)
T 1o9p_A 288 EF--------------SE---HHDEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPA 350 (414)
T ss_dssp HH--------------HH---SGGGSCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTTTCSEEEEESSSSSCCB
T ss_pred HH--------------Hh---ChhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCc
Confidence 11 10 00111133333333 6788999999999999999999999999999999999999999
Q ss_pred CCccccCCCCchhhHHhhhhcCcceeEcccCCCCCCCeeEEEEcC
Q psy7558 464 HYATFFRPYNFTYWALFNILDFPVTNVPVGLDGKGLPLGVQVIAS 508 (508)
Q Consensus 464 ~~~~~~~~~~~~yt~l~N~lG~PaisvP~G~~~~GLPvGvQlvg~ 508 (508)
++... .....||.+||++|+|+++||+|++. |||+||||||+
T Consensus 351 ~~~~~--~~~~~~t~~~nl~G~PaisvP~g~~~-GlPvGvqlvg~ 392 (414)
T 1o9p_A 351 KALAS--TGDPRYNRLWTLMGNPCVNVPVLKVG-GLPIGVQVIAR 392 (414)
T ss_dssp GGGCC--CCCGGGTHHHHHHCCCEEEEEEEEET-TEEEEEEEEES
T ss_pred ccccC--CcccchhhhhHhcCCCeEEeeCCCCC-CCCeEEEEECC
Confidence 86532 12347999999999999999999977 99999999985
No 10
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A
Probab=100.00 E-value=5.7e-92 Score=754.34 Aligned_cols=436 Identities=21% Similarity=0.247 Sum_probs=350.1
Q ss_pred CCccchhcccCHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHCCcccEEE-ecChHHHHHHHHHHhHH---------HHcc
Q psy7558 59 PPVKNKIVLESATQIAKKIRNKNITS-VEVVQAFIERIEQVNPYLNAMV-DTRYTEALEEAKAADQK---------IALE 127 (508)
Q Consensus 59 p~~~~~l~~~sa~~l~~~i~~g~~t~-~evv~a~l~ri~~~n~~lna~~-~~~~~~Al~~A~~~D~~---------~~~g 127 (508)
++++.+-+.+++.++...|.++++++ +|++++++++++++++.+|+++ .+.++++ .+|.+.|+. ..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~g 82 (521)
T 3a1k_A 4 IRPDDKAIDAAARHYGITLDKTARLEWPALIDGALGSYDVVDQLYADEATPPTTSRE-HAVPSASENPLSAWYVTTSIPP 82 (521)
T ss_dssp CCCCHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHTHHHHHHHHHHHHHSCCCCCCCC-EECCCTTTCTTSCEEEEEEECC
T ss_pred CCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHhhhcccccccCchhh-hhccccccchhhhhHHHHhhcC
Confidence 44555666778999999999999999 9999999999999988887777 6677777 666666651 1124
Q ss_pred CCCCCCCCCCcceEeecCcCCCCcccccccccccCCCCCCcHHHHHHHHHcCCeEEEEeCccccC-CCCCCCCCCCCCCC
Q psy7558 128 EDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNN 206 (508)
Q Consensus 128 ~~l~~~PL~GvPi~vKD~~~v~G~~tt~Gs~~~~~~~~~~da~~V~rLr~aGAIilgkTn~~E~~-~~~t~n~~~G~t~N 206 (508)
+. +||||||||+|||||+++|++||+||..++++++.+||++|+|||+||||++||||||||+ +.+|+|++||+|+|
T Consensus 83 ~~--~gpL~GvPi~vKD~i~v~G~~Tt~Gs~~~~~~~~~~DA~vV~rLr~AGAvilGKTn~~Efa~~~~~~n~~~G~t~N 160 (521)
T 3a1k_A 83 TS--DGVLTGRRVAIKDNVTVAGVPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAGKAVCEDLCFSGSSFTPASGPVRN 160 (521)
T ss_dssp SS--CCTTTTCEEEEETTBCCTTSCBCTTCTTTTTBCCSSCCHHHHHHHHTTCEEEEEECCCGGGCCSSSSCCTTCCCEE
T ss_pred CC--CCCCCCCEEEEEcCcccCCcccCCCChhhcCCCCCCchHHHHHHHHCCCEEEEeeChhhHhhCCCCCCCCCCCcCC
Confidence 44 5999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCCCCCCCCCCChhhHHHHhcCCCccccccccccccchhhhccCcccccCCCCcccCCCCCCCCCCCCCCceeecccCCC
Q psy7558 207 PYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKH 286 (508)
Q Consensus 207 P~d~~~t~GGSSgGsaaaVAag~~~~aiGsD~gGSIRiPAa~cGv~G~KPT~G~vs~~G~~p~~~~~~~~~~~~GpmaR~ 286 (508)
|||++|+|||||||||||||+|++++|+|||||||||+||+||||||||||+|+||+.|++|+++ ++|++||||||
T Consensus 161 P~~~~~~pGGSSgGSAAAVAag~~~~alGtDtgGSIR~PAa~cGvvGlKPT~Grvs~~G~~p~~~----sld~~Gp~aRs 236 (521)
T 3a1k_A 161 PWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIER----TIDHLGPITRT 236 (521)
T ss_dssp TTEEEEECCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECSTTTSCCTTBCCSCG----GGCEEEEEESS
T ss_pred CCCCCCCCCCCCchHHHHHhcCCcceecccCCCCCCCcChHHcCCeeEecCCCcCCCCCCCCccc----ccCeeCceeCc
Confidence 99999999999999999999999999999999999999999999999999999999999999887 99999999999
Q ss_pred cchHHHHHHHhcCCCCCCCCCCC-cc---------CcCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCee
Q psy7558 287 AEDLLPYSKCLILPDKLPAYNFD-KS---------VDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEP 356 (508)
Q Consensus 287 v~Dl~~ll~vl~g~~~~d~~~~~-~~---------~~~~~lrIg~~~~~g~~~~~~v~~~v~~a~~~av~~L~~~lG~~V 356 (508)
|+|+++++++|+|+|+.|+.... .+ .+++++|||++.+.. ....++++++++++++++.|+++ |++|
T Consensus 237 v~D~a~~l~vlag~d~~D~~~~~~~~~~~~~~~l~~~~~~lrIgv~~~~~--~~~~~~~~v~~a~~~a~~~L~~~-Ga~v 313 (521)
T 3a1k_A 237 VHDAALMLSVIAGRDGNDPRQADSVEAGDYLSTLDSDVDGLRIGIVREGF--GHAVSQPEVDDAVRAAAHSLTEI-GCTV 313 (521)
T ss_dssp HHHHHHHHHHHCSCCSSCTTSCTTCCCCCSSTTTTSCCTTCEEEEEGGGS--CCSSSCHHHHHHHHHHHHGGGGG-TCEE
T ss_pred HHHHHHHHHHHhCCCCCCccccccCCCcchhhhhccCccCcEEEEECccc--cccCCCHHHHHHHHHHHHHHHHC-CCEE
Confidence 99999999999998876665421 11 136889999986521 12467999999999999999996 9999
Q ss_pred eecCCCCchhhHHHHHHHHHHhhhhhHHHHHh-h-----cc-cchhhHHHHH-hhhcCCCcchHHHHHH-HHH-----hC
Q psy7558 357 EDLSHIKQFRLGYDVWRYWVSKEKDDFCKMLY-D-----FK-GEAVWWKELI-KLPLGMCTITFSSILK-LID-----MQ 422 (508)
Q Consensus 357 ~~~v~lp~~~~~~~~~~~~~~~~~~~~~~~l~-~-----~~-~~~~~~~e~~-~~~~~~~~~~~~~~~~-l~~-----~~ 422 (508)
++ +++|...+....|..+.... . ...++. + .. .....+.+.+ .+.........+.+.. ++. ..
T Consensus 314 ~e-v~~p~~~~~~~~~~~~~~~~-~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~ 390 (521)
T 3a1k_A 314 EE-VNIPWHLHAFHIWNVIATDG-G-AYQMLDGNGYGMNAEGLYDPELMAHFASRRIQHADALSETVKLVALTGHHGITT 390 (521)
T ss_dssp EE-ECCTHHHHHHHHHHHHHHHH-H-HHHTTTTTTTCSSSCSCCCHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHTT
T ss_pred EE-eCCCchHhHHHHHHHHHHHH-H-HhhhhhccccccchhhhhhHHHHHHHHHHhhhhhhhcCHHHHHHHHhchhhhcc
Confidence 99 99987766555554333211 1 011100 0 00 0001111111 1110011111122222 211 35
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCCCCCCCccccCC--------CCchhhHHhhhhcCcceeEcccC
Q psy7558 423 LPLPSDQWAKEHTEILKTKLTELLGDNGVLVFPAAPESAPYHYATFFRP--------YNFTYWALFNILDFPVTNVPVGL 494 (508)
Q Consensus 423 ~s~~~y~~a~~~r~~~~~~~~~~l~~~dvll~Pt~p~~Ap~~~~~~~~~--------~~~~yt~l~N~lG~PaisvP~G~ 494 (508)
++..+|.++++.|++++++|.++|+++|+||+||+|.+||++++..... ....||.+||++|+|+++||+|+
T Consensus 391 ~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~ 470 (521)
T 3a1k_A 391 LGGASYGKARNLVPLARAAYDTALRQFDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAGL 470 (521)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHCSEEEEESCSSCCCBCCCTTCCHHHHHHHHHTTCTTTHHHHHHCCCEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCCcccccccCchhhHHHHHHhhhcccccchhcCCCcEEeeccc
Confidence 6778999999999999999999999999999999999999998632110 12467999999999999999999
Q ss_pred CCCCCCeeEEEEcC
Q psy7558 495 DGKGLPLGVQVIAS 508 (508)
Q Consensus 495 ~~~GLPvGvQlvg~ 508 (508)
.+|||+||||||+
T Consensus 471 -~~GlPvGlQlvg~ 483 (521)
T 3a1k_A 471 -VNGLPVGMMITGR 483 (521)
T ss_dssp -ETTEEEEEEEECS
T ss_pred -CCCCCeeEEEEcC
Confidence 8999999999985
No 11
>3shg_B VBHA; ampylation, adenylylation, toxin-antitoxin complex, FIC fold transfer, transferase-protein binding complex; HET: TLA; 1.50A {Bartonella schoenbuchensis R1}
Probab=60.35 E-value=11 Score=27.17 Aligned_cols=28 Identities=14% Similarity=0.394 Sum_probs=25.0
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy7558 70 ATQIAKKIRNKNITSVEVVQAFIERIEQ 97 (508)
Q Consensus 70 a~~l~~~i~~g~~t~~evv~a~l~ri~~ 97 (508)
+.++.+.+-+|++|..++++.|.+||++
T Consensus 32 ~l~~~erwv~GEis~~e~i~~~~~r~~~ 59 (61)
T 3shg_B 32 VVAQMERVVVGELETSDVIKDLMERIKR 59 (61)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHc
Confidence 4567889999999999999999999975
No 12
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=24.89 E-value=56 Score=25.38 Aligned_cols=39 Identities=13% Similarity=0.265 Sum_probs=33.1
Q ss_pred CCCccchhcccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q psy7558 58 LPPVKNKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQV 98 (508)
Q Consensus 58 ~p~~~~~l~~~sa~~l~~~i~~g~~t~~evv~a~l~ri~~~ 98 (508)
+|...++|..++..|+.++++.-.+|.+|+. +|.-|.+.
T Consensus 33 LPFsvdqIvnLpv~eFn~lL~~~~Lt~~Ql~--lIrdiRRR 71 (90)
T 2lz1_A 33 IPFPVEKIINLPVVDFNEMMSKEQFNEAQLA--LIRDIRRR 71 (90)
T ss_dssp CSSCHHHHHHSCHHHHHHHHHHSCCCHHHHH--HHHHHHHH
T ss_pred CCCCHHHHHHCCHHHHHHHHHHcCCCHHHHH--HHHHHHHh
Confidence 8888999999999999999999999999974 45555544
No 13
>1nha_A TFIIF-alpha, transcription initiation factor IIF, alpha subunit; transcription factor, human general transcription factor TFIIF, RAP74; NMR {Homo sapiens} SCOP: a.4.5.30 PDB: 1onv_A
Probab=21.54 E-value=1.1e+02 Score=23.37 Aligned_cols=33 Identities=21% Similarity=0.457 Sum_probs=27.5
Q ss_pred CHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHCCc
Q psy7558 69 SATQIAKKIRNKN--ITSVEVVQAFIERIEQVNPY 101 (508)
Q Consensus 69 sa~~l~~~i~~g~--~t~~evv~a~l~ri~~~n~~ 101 (508)
+..||.++++.+. +++.|.++.+.+=+++.||.
T Consensus 34 TT~dLl~KFK~r~~~~~~~e~v~~~a~ILKki~p~ 68 (82)
T 1nha_A 34 TTKDLLKKFQTKKTGLSSEQTVNVLAQILKRLNPE 68 (82)
T ss_dssp CHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHCCE
T ss_pred cHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCHH
Confidence 5789999998875 79999999988888888774
No 14
>2j6y_A Phosphoserine phosphatase RSBU; hydrolase, partner switching, protein phosphatase, RSBT, stress; 1.85A {Bacillus subtilis} PDB: 2j70_A 2j6z_A
Probab=20.32 E-value=1.5e+02 Score=24.13 Aligned_cols=35 Identities=17% Similarity=0.315 Sum_probs=31.5
Q ss_pred cCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCcc
Q psy7558 68 ESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYL 102 (508)
Q Consensus 68 ~sa~~l~~~i~~g~~t~~evv~a~l~ri~~~n~~l 102 (508)
..+.++.+.+-..+++|+|+|.-..+-+++.+|.+
T Consensus 28 y~aq~fsr~liek~I~PEeiV~iHk~~i~~l~~~l 62 (111)
T 2j6y_A 28 YQAQKFSRKTIEHQIPPEEIISIHRKVLKELYPSL 62 (111)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCC
Confidence 36788889999999999999999999999999875
Done!