RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7558
(508 letters)
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH,
oxazole, oxadiazole, endoca degradation, membrane
protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB:
2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A*
2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A*
3qj9_A* 3qkv_A*
Length = 573
Score = 325 bits (834), Expect = e-105
Identities = 108/497 (21%), Positives = 189/497 (38%), Gaps = 65/497 (13%)
Query: 62 KNKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAAD 121
++ Q+ +K+++ ++ V ++ + +VN N + + ++A
Sbjct: 65 SEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQAPR 124
Query: 122 QKIALEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGI 181
Q GVP + KE + KG +TLGL +G +++D +V+ +K G +
Sbjct: 125 QG----------LLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAV 174
Query: 182 LLGNTNIPE-LLWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGG 240
+TN+P+ + + N ++GQ+ NP+ ++ G SSGGE L+ + GS LGLGTD+GG
Sbjct: 175 PFVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGG 234
Query: 241 SNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILP 300
S R P+ +CG+ G K T ++ G+ G + L+ GP+ + E L K L+
Sbjct: 235 SIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCE 294
Query: 301 DKLPA--------YNFDKSVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALK--- 349
+ + L+V Y E SP M +A+ + L+
Sbjct: 295 HLFTLDPTVPPLPFREEVYRSSRPLRVGYYETDNYTMPSP---AMRRALIETKQRLEAAG 351
Query: 350 --VVSHSEP---EDLSHIKQFRLGYDVWRYWVSKEKDDFCKMLYDFKGEAVWWKELIKLP 404
++ L + L D R ++ K DF + K
Sbjct: 352 HTLIPFLPNNIPYALEVLSTGGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRL 411
Query: 405 LGMCTITFSSILK-LIDMQLPLPSDQWAKEHTEI--LKTKLTELLGDNGV--LVFPAAPE 459
L + L ++ P +++ K EI + + + L+ P
Sbjct: 412 LSLLLKPLFPRLAAFLNNMRPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVLLTPMLG- 470
Query: 460 SAPYHYATFFRPYNFTYWALFNILDFPVTNVPVGL------------------------- 494
A +Y L+N LDFP VPV
Sbjct: 471 PALDLNTPGRATGAVSYTMLYNCLDFPAGVVPVTTVTAEDDAQMELYKGYFGDIWDIILK 530
Query: 495 ----DGKGLPLGVQVIA 507
+ GLP+ VQ +A
Sbjct: 531 KAMKNSVGLPVAVQCVA 547
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon
degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Length = 493
Score = 229 bits (586), Expect = 2e-69
Identities = 112/478 (23%), Positives = 188/478 (39%), Gaps = 70/478 (14%)
Query: 69 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEE 128
AT A+ +R+ I+ E+++A I ++ VNP +NA++ + +A E++ A
Sbjct: 9 DATAQAELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESELASG------ 62
Query: 129 DISDKPYLGVPFTSKESTAC-KGLSNTLG--LLARKGKKADADAYIVERVKTAGGILLGN 185
P+ GVP+ K+ T +G NT + G +AD DAY V+R++ AG +LLG
Sbjct: 63 -----PFAGVPYLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGK 117
Query: 186 TNIPEL-LWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSV-LGLGTDLGGSNR 243
TN PE+ + +G + NP+NL R+ G SSGG V A + G D G+ R
Sbjct: 118 TNTPEMGNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAV-AAALSPVAHGNDAAGAVR 176
Query: 244 IPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAED---LL--------- 291
IPA CGV G K T G + S G D G + D LL
Sbjct: 177 IPASVCGVVGLKPTRGRI-SPGPLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSGHRPG 235
Query: 292 -PYSKCLILPDKLPAYNFDKSVDLAKLKVFYVEEP--GDMKVSPMSKDMIQAIRKCVNAL 348
+ P Y S + L+V + GD + P + A R AL
Sbjct: 236 DTFC----APTASRPYAQGISENPGSLRVGVLTHNPVGDFALDP---ECAAAARGAAAAL 288
Query: 349 K----VVSHSEPEDLSHIKQFRLGYDVWRYWVSKEKDDFCKMLY------DFKGEAVWWK 398
V+ + PE L + + +++E + +++ D + +
Sbjct: 289 AALGHDVNDAYPEALGDRSFLKDYSTICDVAIAREIERNGELIGRPLTEDDVEWTSWEMV 348
Query: 399 ELIKLPLGMCTITFSSILKLIDMQLPLPSDQWAKEHTEILKTKLTELLG--------DNG 450
+ +T + +D +A + + L+ + G
Sbjct: 349 KRADQ------VTGRAFAACVDEL-----RYYAGKVERWWEAGWDLLILPTVTRQTPEIG 397
Query: 451 VLVFPAAPESAPYHYATFFRPYNFTYW-ALFNILDFPVTNVPVGLDGKGLPLGVQVIA 507
L+ + A + FN+ P ++P+G+ G+P+GVQ++A
Sbjct: 398 ELMLAKGTDLEGRQSAFISGSLQMLAFTVPFNVSGQPAISLPIGMSSDGMPIGVQIVA 455
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on
protein structural and functional analyses; 2.00A
{Thermus thermophilus}
Length = 434
Score = 164 bits (417), Expect = 2e-45
Identities = 62/229 (27%), Positives = 94/229 (41%), Gaps = 23/229 (10%)
Query: 69 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEE 128
+ + + T + +++ +ER + NA+ A +EA A +++ +
Sbjct: 2 DLLEAKRLLETGRTTPLALLEEALERAKAFQD-RNALAYLDEEAARKEALALTEELRRGQ 60
Query: 129 DISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNI 188
P G+P T K+ KG+ G A + +A V R++ AG +L TN+
Sbjct: 61 VRG--PLHGLPLTVKDLFPVKGMPTRAGTKAPLPPLPE-EARAVRRLREAGALLFAKTNM 117
Query: 189 PELLW-SESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPAL 247
E+ N G N + R G SSGG A V+ + LGTD GGS RIPA
Sbjct: 118 HEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDTGGSIRIPAG 177
Query: 248 YCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLA-------AGPIVKHAED 289
+ GV G K + G V S G L AGP+ + D
Sbjct: 178 FNGVVGFKPSYGRV-SL--EG--------ALPLSRSTDHAGPLTRSVRD 215
Score = 34.5 bits (80), Expect = 0.081
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 14/68 (20%)
Query: 451 VLVFPAAPESAP-----------YHYATFFRPYNFTYWALFNILDFPVTNVPVGLDGKGL 499
L+ P P AP T F++L P +P G+
Sbjct: 350 ALLLPVQPLPAPPLGTEEVELESGRKGHREAFITLT--LPFSLLGVPTLALPFAKVE-GM 406
Query: 500 PLGVQVIA 507
P+G+QV+
Sbjct: 407 PVGLQVVG 414
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, ATP-binding, nucleotide-bindi protein
biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB:
2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Length = 485
Score = 156 bits (396), Expect = 4e-42
Identities = 62/231 (26%), Positives = 109/231 (47%), Gaps = 25/231 (10%)
Query: 69 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEE 128
S + I++K I +VV+ + IE+ +P + + + A+++A+ D+ A ++
Sbjct: 7 SVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQ 66
Query: 129 DISDKPYLGVPFTSKESTACKGLSNTLG--LLARKGKKADADAYIVERVKTAGGILLGNT 186
G+P K++ GL T +L G ++ ++E++ +L+G
Sbjct: 67 MDG--KLFGIPMGIKDNIITNGLETTCASKMLE--GFVPIYESTVMEKLHKENAVLIGKL 122
Query: 187 NIPEL-LWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIP 245
N+ E + + + ++ NP++ G SSGG A V+A L LG+D GGS R P
Sbjct: 123 NMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQP 182
Query: 246 ALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLA-------AGPIVKHAED 289
A YCGV G K T G V SR +G ++A GP+ ++ +D
Sbjct: 183 AAYCGVVGMKPTYGRV-SR--FG--------LVAFASSLDQIGPLTRNVKD 222
Score = 28.3 bits (64), Expect = 6.3
Identities = 8/18 (44%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 490 VPVGLDGKGLPLGVQVIA 507
VP G G P+G+Q I
Sbjct: 441 VPCGQS-NGRPIGLQFIG 457
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP:
c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A
1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Length = 414
Score = 149 bits (379), Expect = 2e-40
Identities = 54/288 (18%), Positives = 93/288 (32%), Gaps = 46/288 (15%)
Query: 69 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEE 128
S + ++I ++ + IE ++A V +++ A L
Sbjct: 3 SLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFV------RHDKSARAQASGPLR- 55
Query: 129 DISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNI 188
G+ K+ + +G +G + +DA +V +K AG ++G T
Sbjct: 56 --------GIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTT 107
Query: 189 PELLWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALY 248
+ + NP+N + G +S G A V A L LGT GGS PA Y
Sbjct: 108 TAFASRDP-----TATLNPHNTGHSPGGASSGSAAAVGAGMIPLALGTQTGGSVIRPAAY 162
Query: 249 CGVYGHKLTTGSVNSRGIYGRDGKEGKSMLA-------AGPIVKHAEDLLPYSKCLILPD 301
CG K + + G + G AEDL +
Sbjct: 163 CGTAAIKPSFRML-PT--VG--------VKCYSWALDTVGLFGARAEDLARGLLAMTGRS 211
Query: 302 KLPAYNFDKSVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALK 349
+ V ++ V + V P Q ++ + A +
Sbjct: 212 EF-----SGIVPAKAPRIGVVRQEFAGAVEP---AAEQGLQAAIKAAE 251
Score = 41.4 bits (98), Expect = 5e-04
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 431 AKEHTEILKTKLTELLGDNGVLVFPAAPESAPYHYATFFRPYNFTYWALFNILDFPVTNV 490
A+ + +L E+ VL+ +AP +AP + L+ ++ P NV
Sbjct: 318 ARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALASTGDPRYNR--LWTLMGNPCVNV 375
Query: 491 PVGLDGKGLPLGVQVIA 507
PV G GLP+GVQVIA
Sbjct: 376 PVLKVG-GLPIGVQVIA 391
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double
layers of alpha helices on TOP and bottom, hydrolase;
HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP:
c.117.1.1 PDB: 1m21_A*
Length = 503
Score = 151 bits (383), Expect = 3e-40
Identities = 67/239 (28%), Positives = 112/239 (46%), Gaps = 35/239 (14%)
Query: 69 SATQIAKKIRNKNITSVEVVQAFIERIEQVN---PYLNAMVDTRYTEALEEAKAADQKIA 125
+ ++ + S + QA+++RI ++ P L A++ +AL+EA D++
Sbjct: 12 DVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVI-ELNPDALKEAAERDRERR 70
Query: 126 LEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGN 185
P G+P K++ ++ + G LA +G + D DAY+V R++ AG ++LG
Sbjct: 71 DGRLRG--PLHGIPLLLKDNINAAPMATSAGSLALQGFRPD-DAYLVRRLRDAGAVVLGK 127
Query: 186 TNIPELLW-----SESRNM---VYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTD 237
TN+ E W ++S + GQ+ NPY + + SS G A V+A + + +GT+
Sbjct: 128 TNLSE--WANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAIGTE 185
Query: 238 LGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLA-------AGPIVKHAED 289
GS PA GV G K T G V SR G ++ AGP+ + D
Sbjct: 186 TDGSIVCPAAINGVVGLKPTVGLV-SR--DG--------IIPISFSQDTAGPMARSVAD 233
Score = 34.5 bits (80), Expect = 0.080
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 451 VLVFPAAPESAPYHYATFFRPYNFTYWALFNILDFPVTNVPVGLDGKGLPLGVQVIA 507
LV P + P P A + +P VP+G GLP+G+ +
Sbjct: 412 ALVAPTTGVAWPIRSEGDDFPGESYSAA--AVAGYPSLTVPMGQI-DGLPVGLLFMG 465
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, protein biosynthesis; HET: ADP; 2.30A
{Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Length = 478
Score = 150 bits (381), Expect = 3e-40
Identities = 68/231 (29%), Positives = 114/231 (49%), Gaps = 31/231 (13%)
Query: 69 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEE 128
S +++ + ++ ++ EVV++F +R Q + A + Y +AL++A++ ++
Sbjct: 6 SLSELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLKEREL--- 62
Query: 129 DISDKPYLGVPFTSKESTACKGLSNTLG--LLARKGKKADADAYIVERVKTAGGILLGNT 186
P G+P K++ +G T +L A DA ++ER+K AG +++G T
Sbjct: 63 -----PLFGIPIAVKDNILVEGEKTTCASKILE--NFVAPYDATVIERLKKAGALIVGKT 115
Query: 187 NIPEL-LWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIP 245
N+ E + S + + + NP++L R G SSGG A V+ + + LG+D GGS R P
Sbjct: 116 NLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVSLGSDTGGSIRQP 175
Query: 246 ALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLA-------AGPIVKHAED 289
A +CGV G K T G V SR YG ++A G + ED
Sbjct: 176 ASFCGVIGIKPTYGRV-SR--YG--------LVAFASSLDQIGVFGRRTED 215
Score = 29.0 bits (66), Expect = 3.8
Identities = 7/18 (38%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 490 VPVGLDGKGLPLGVQVIA 507
+P+ GLP+G Q+I
Sbjct: 434 IPIAWK-DGLPVGGQLIG 450
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab,
ATP-binding, aminoacyl-tRNA synthetase, ligas
nucleotide-binding, protein biosynthesis, ligase-RNA
comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Length = 471
Score = 149 bits (380), Expect = 4e-40
Identities = 73/231 (31%), Positives = 117/231 (50%), Gaps = 33/231 (14%)
Query: 69 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEE 128
A +I ++ ++ +EV QA+++R+++++P L A + + LEEA+A D + L
Sbjct: 2 LAHEIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFL-SLNERLLEEAEAVDPGLPLA- 59
Query: 129 DISDKPYLGVPFTSKESTACKGLSNTLG--LLARKGKKADADAYIVERVKTAGGILLGNT 186
G+ K++ A +GL T G LL +A V R+K G ++LG T
Sbjct: 60 --------GLVVAVKDNIATRGLRTTAGSRLLE--NFVPPYEATAVARLKALGALVLGKT 109
Query: 187 NIPEL-LWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIP 245
N+ E + S + + + + NP++ R G SSGG A ++A + L LG+D GGS R P
Sbjct: 110 NLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQP 169
Query: 246 ALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLA-------AGPIVKHAED 289
A +CGVYG K T G V SR +G ++A GP+ + D
Sbjct: 170 AAFCGVYGLKPTYGRV-SR--FG--------LIAYASSLDQIGPMARSVRD 209
Score = 29.4 bits (67), Expect = 2.8
Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 486 PVTNVPVGLDGKGLPLGVQVIA 507
P + P G +G LP+G+Q++A
Sbjct: 419 PALSFPAGFEG-HLPVGLQLLA 439
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural
genomics, joint center for structura genomics, JCSG;
HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP:
c.117.1.1 PDB: 3al0_A*
Length = 476
Score = 135 bits (342), Expect = 7e-35
Identities = 65/231 (28%), Positives = 107/231 (46%), Gaps = 38/231 (16%)
Query: 69 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEE 128
I + ++ ++ Q +E I++++P++ A + R ++E+
Sbjct: 8 RKLTIEECLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVEKKG---------- 57
Query: 129 DISDKPYLGVPFTSKESTACKGLSNTLG--LLARKGKKADADAYIVERVKTAGGILLGNT 186
+ G+P K++ G+ T +L ++ DA +V+++K AG +++G
Sbjct: 58 -----KFWGIPVAIKDNILTLGMRTTCASRILE--NYESVFDATVVKKMKEAGFVVVGKA 110
Query: 187 NIPEL-LWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIP 245
N+ E + S + + + NP++L R G SSGG A VSA V LG+D GGS R P
Sbjct: 111 NLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQP 170
Query: 246 ALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLA-------AGPIVKHAED 289
A CGV G+K T G V SR YG ++A GPI K D
Sbjct: 171 ASLCGVVGYKPTYGLV-SR--YG--------LVAFASSLDQIGPITKTVRD 210
Score = 29.0 bits (66), Expect = 3.9
Identities = 10/18 (55%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 490 VPVGLDGKGLPLGVQVIA 507
VP G LP+GVQVI
Sbjct: 426 VPFGFS-NNLPVGVQVIG 442
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB:
3a1i_A
Length = 521
Score = 128 bits (323), Expect = 5e-32
Identities = 57/239 (23%), Positives = 81/239 (33%), Gaps = 23/239 (9%)
Query: 63 NKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQ 122
+ + K R + ++ + ++Q+ T A+ A
Sbjct: 12 DAAARHYGITLDKTARLEWPALIDGALGSYDVVDQLYADEATPPTTSREHAVPSASENPL 71
Query: 123 KIALEEDI----SDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTA 178
SD G K++ G+ G +G DA +V R+ A
Sbjct: 72 SAWYVTTSIPPTSDGVLTGRRVAIKDNVTVAGVPMMNGSRTVEGFTPSRDATVVTRLLAA 131
Query: 179 GGILLGNTNIPEL-LWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTD 237
G + G +L S G NP++ R G SSGG A LV+ +G D
Sbjct: 132 GATVAGKAVCEDLCFSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGD 191
Query: 238 LGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLA-------AGPIVKHAED 289
GGS RIPA +CGV GHK T G V G GPI + D
Sbjct: 192 QGGSIRIPAAFCGVVGHKPTFGLV-PY--TG--------AFPIERTIDHLGPITRTVHD 239
Score = 33.0 bits (76), Expect = 0.23
Identities = 18/67 (26%), Positives = 24/67 (35%), Gaps = 13/67 (19%)
Query: 451 VLVFPAAPESAP----------YHYATFFRPYNFTYWALFNILDFPVTNVPVGLDGKGLP 500
VLV P P A T A F++ P +VP GL GLP
Sbjct: 419 VLVMPTLPYVASELPAKDVDRATFITKALGMIANT--APFDVTGHPSLSVPAGLV-NGLP 475
Query: 501 LGVQVIA 507
+G+ +
Sbjct: 476 VGMMITG 482
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.2 bits (150), Expect = 3e-10
Identities = 72/443 (16%), Positives = 120/443 (27%), Gaps = 163/443 (36%)
Query: 128 EDISDKPYLGVPFTSKE-------STACKGLSNTLGLLARKGKK--------ADADAY-- 170
+D+ D P + + +E A G L K ++ Y
Sbjct: 36 KDVQDMP-KSI-LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF 93
Query: 171 IVERVKTAGGILLGNTNIPEL---LWSESRNMVY--GQSNNPYNLCRTTGASSGGEACLV 225
++ +KT P + ++ E R+ +Y Q YN+ R
Sbjct: 94 LMSPIKT-------EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ----------- 135
Query: 226 SACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVK 285
L L L PA + G GS GK+ +A
Sbjct: 136 ----PYLKLRQAL--LELRPAKNVLIDGVL---GS-------------GKTWVAL----- 168
Query: 286 HAEDLLPYSKCLILPDK-----LPAYNFDKSVDLAKLKVFYVEEPGDMKVSPMSKDMIQA 340
+ L Y + K L N ++V L L+ + + D
Sbjct: 169 --DVCLSYKVQCKMDFKIFWLNLKNCNSPETV-LEMLQKLLYQIDPNWTSRS---DHSSN 222
Query: 341 IRKCVNALKVVSHSEPEDLSHIKQFRLGY----DVWRYWVSKEKDDFCKML--------Y 388
I+ +++++ +E L K + +V + CK+L
Sbjct: 223 IKLRIHSIQ----AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 389 DF-------------------KGEAVWWKELI---------KLPLGMCTI---TFSSI-L 416
DF E K L+ LP + T S I
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEV---KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 417 KLIDMQLPLPSDQW----AKEHTEILKTKLTELLGDNGVLVFPAAPESAPYHYATFFRPY 472
+ D D W + T I+++ L L P Y R
Sbjct: 336 SIRDG--LATWDNWKHVNCDKLTTIIESSLNVL---------------EPAEY----RKM 374
Query: 473 NFTYWALFNILDFPV-TNVPVGL 494
+ L + FP ++P L
Sbjct: 375 ---FDRLS-V--FPPSAHIPTIL 391
Score = 56.4 bits (135), Expect = 2e-08
Identities = 92/558 (16%), Positives = 156/558 (27%), Gaps = 152/558 (27%)
Query: 13 DQSSRRHSSKNRLTFLRTFL-IFVR--VCFD--SFINIIFSFIYKDEAFPLPPVKNKIVL 67
+ ++ K+ L F FV C D I S D + +
Sbjct: 10 ETGEHQYQYKD---ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 68 ESATQIAKKIRNKNITSVEVVQAFIERIEQVN-PYLNAMVDTRYTE-ALEEAKAADQKIA 125
+ + +K E+VQ F+E + ++N +L + + T + ++ +Q+
Sbjct: 67 -----LFWTLLSKQ---EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 126 LEEDISDKPYLGVPFTSKESTACKGLSN-------TL-GLLARKGKK--ADADAYIVERV 175
L D V + L + G+L GK A D + +V
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG-SGKTWVA-LDVCLSYKV 176
Query: 176 KTA--GGIL---LGNTNIPELLWSESRNMVY-----------GQSNNPYNL------CRT 213
+ I L N N PE + + ++Y SN + R
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 214 TGASSGGEACLVSACGSVLGLGTDLGGSNRIPA--LYCGVYGHKLTTGSVN--------- 262
S E CL+ VL ++ + A L C + LTT
Sbjct: 237 LLKSKPYENCLL-----VL---LNVQNAKAWNAFNLSCKIL---LTTRFKQVTDFLSAAT 285
Query: 263 ---SRGIYGRDG---KEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPAYNFDKSVDLAK 316
+ E KS+L + LP P +L S+
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLK--YLDCRPQDLPREVLTTNPRRL-------SIIAES 336
Query: 317 LKVF-----YVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIKQFR-LG-- 368
++ + K++ I +N L EP + K F L
Sbjct: 337 IRDGLATWDNWKHVNCDKLT-------TIIESSLNVL------EPAEYR--KMFDRLSVF 381
Query: 369 -YDVW-------RYWVSKEKDDFCKMLYDFKGEAV---WWKELIKLPLGMCTITFSSILK 417
W K D ++ ++ KE T S +
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES----------TIS--IP 429
Query: 418 LIDMQLPLPSDQWAKEHTEILKTKLTELLGDNGVLVFPAAPESAPYH--YATFFRPYNFT 475
I ++L + + H I+ N F + PY Y ++
Sbjct: 430 SIYLELKVKLENEYALHRSIVDH-------YNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 476 ------YWALFNI--LDF 485
LF + LDF
Sbjct: 483 NIEHPERMTLFRMVFLDF 500
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.6 bits (123), Expect = 5e-07
Identities = 96/591 (16%), Positives = 165/591 (27%), Gaps = 231/591 (39%)
Query: 13 DQSSRRHSSKNRLT-FLRTFLIFVRVCFDSFINIIFSFIYK-DEAFPLPPVKNKIVLES- 69
LT F +L N I + K + VK K ++++
Sbjct: 76 KVGQFDQVLNLCLTEFENCYL---------EGNDIHALAAKLLQENDTTLVKTKELIKNY 126
Query: 70 --ATQIAKKIRNKNITSVEVVQAFIERIE------------Q--VNPYLNAMVD--TRYT 111
A +AK+ +K S A + Q + Y + D Y
Sbjct: 127 ITARIMAKRPFDKKSNS-----ALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYH 181
Query: 112 EALEE--AKAADQKIALEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADA 169
+ + +A+ L D + FT +GL N L L D D
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKV---FT-------QGL-NILEWLENPSNTPDKD- 229
Query: 170 YIVERVKTAGGI---LLGNTNIPELLWSESRNMVYGQSNNPYNLCRTTG----------- 215
Y++ + I L+G ++ Q + + G
Sbjct: 230 YLL----SIP-ISCPLIG------VI----------QLAHYVVTAKLLGFTPGELRSYLK 268
Query: 216 ASSGGEACLVSACGSVLGLGTDLGGS---NRIPAL----YCGVYGHKLT-TGSVNSRGI- 266
++G LV+A + S + A+ + GV ++ S+ +
Sbjct: 269 GATGHSQGLVTA--VAIAETDS-WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE 325
Query: 267 YGRDGKEGK--SMLA-AGPIVKHAEDL-------LPYSKCLIL-----PDKL-----PA- 305
+ EG ML+ + + +D LP K + + L P
Sbjct: 326 DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS 385
Query: 306 -YNFDKSVDLAKLKVFYVEEPGDMKVS--PMSKDMIQAIRKCVNALKVVS---------H 353
Y + + L K K P + S P S+ RK LK + H
Sbjct: 386 LYGLNLT--LRKAKA-----PSGLDQSRIPFSE------RK----LKFSNRFLPVASPFH 428
Query: 354 SE--PEDLSHIKQFRLGYDVWRYWVSKEKDDFCKMLYDFKGEAVWWKELIKLPL-----G 406
S I + D+ + VS + + I++P+ G
Sbjct: 429 SHLLVPASDLINK-----DLVKNNVS------------------FNAKDIQIPVYDTFDG 465
Query: 407 --MCTITFSSILKLIDMQLPLPSDQWAKEHTEILKTKLTELLGDNGVLVFPAAPESAPYH 464
+ ++ S +++D + LP W + H
Sbjct: 466 SDLRVLSGSISERIVDCIIRLPVK-W------------------------ETTTQFKATH 500
Query: 465 YATFFRPYNFTYWALFNILDF-PVTNVPVG------LDGKGLPLGVQVIAS 508
ILDF P +G DG GV+VI +
Sbjct: 501 -----------------ILDFGPGGASGLGVLTHRNKDGT----GVRVIVA 530
Score = 44.7 bits (105), Expect = 9e-05
Identities = 61/342 (17%), Positives = 98/342 (28%), Gaps = 137/342 (40%)
Query: 7 ASSNTPDQSSRRHSSKNRLTFLRTFLIFVRVCFDSFINIIFSFIYKDEAFP---LPPVKN 63
A +++ + S S + +T L F I VR C EA+P LPP
Sbjct: 284 AETDSWE--SFFVSVRKAITVL--FFIGVR-C--------------YEAYPNTSLPP--- 321
Query: 64 KIVLESATQIAKK------IRNKNITSVEVVQAFIERIEQVNPYL-----------NA-- 104
I+ +S I N V+ + + + N +L N
Sbjct: 322 SILEDSLENNEGVPSPMLSISNLTQEQVQ------DYVNKTNSHLPAGKQVEISLVNGAK 375
Query: 105 -MVDTRYTEAL-------EEAKAA---DQ-KIALEEDISDKP-----YL--GVPFTSKES 145
+V + ++L +AKA DQ +I E K +L PF S
Sbjct: 376 NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE---RKLKFSNRFLPVASPFHSH-- 430
Query: 146 TACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNT-NIPELLWSESRNMVYGQS 204
LL A I + + IP VY
Sbjct: 431 -----------LL------VPASDLINKDLVKNNVSFNAKDIQIP----------VYDTF 463
Query: 205 NNPYNLCRTTGASSGG-------------EACLVSACGSVLGLGTDLGGSNRIPALYCGV 251
+ +L R S E +L G GG++ + L
Sbjct: 464 DG-SDL-RVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGP--GGASGLGVLT--- 516
Query: 252 YGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPY 293
H+ G G+ ++ AG + + +D +
Sbjct: 517 --HRNKDG----TGV---------RVIVAGTLDINPDDDYGF 543
Score = 34.6 bits (79), Expect = 0.089
Identities = 7/32 (21%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 67 LESATQIAKKIRNKNITSVEVVQAF-IERIEQ 97
L++ T + I+ + I +E+ ++ +E +E
Sbjct: 1862 LDTVTNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
Score = 30.0 bits (67), Expect = 2.3
Identities = 33/147 (22%), Positives = 47/147 (31%), Gaps = 57/147 (38%)
Query: 71 TQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTR----------YTEALEEAKAA 120
TQ A +T +E A E ++ ++ Y AL A A
Sbjct: 1732 TQPA-------LTLMEK--AAFEDLKS-----KGLIPADATFAGHSLGEYA-AL--ASLA 1774
Query: 121 DQKIALEEDISDKPYL----G------VPFTSKESTACKGLSNTLGLLA----RKGKKAD 166
D + I + G VP G SN G++A R
Sbjct: 1775 D---VM--SIESLVEVVFYRGMTMQVAVPRDEL------GRSNY-GMIAINPGRVAASFS 1822
Query: 167 ADA--YIVERVKTAGGILLG--NTNIP 189
+A Y+VERV G L+ N N+
Sbjct: 1823 QEALQYVVERVGKRTGWLVEIVNYNVE 1849
>3rva_A Organophosphorus acid anhydrolase; PITA-bread fold, binuclea
center, BI-functional, prolidase, nerve agents, XAA-Pro
DIP hydrolase; 1.80A {Alteromonas macleodii}
Length = 451
Score = 32.3 bits (74), Expect = 0.39
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 9/54 (16%)
Query: 431 AKEHTEILKTKLTELL---GDNGVLVFPAAPESAPY---HYATFFRPY-NFTYW 477
++H E L+ + E L G +G+++ + HY F+ F W
Sbjct: 8 YQQHIEELQARTREALQREGLDGLVIHSGQGKRLFLDDNHYP--FKVNPQFKAW 59
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.43
Identities = 6/31 (19%), Positives = 12/31 (38%), Gaps = 6/31 (19%)
Query: 284 VKHAEDLL-PYSKCLILPDKLPAYNFDKSVD 313
+K + L Y+ D PA +++
Sbjct: 22 LKKLQASLKLYA-----DDSAPALAIKATME 47
Score = 31.1 bits (69), Expect = 0.43
Identities = 9/30 (30%), Positives = 11/30 (36%), Gaps = 9/30 (30%)
Query: 433 EHTEILKTKLTELLGDNGVLVFPAAPESAP 462
E + K KL L A +SAP
Sbjct: 18 EKQAL-K-KLQASLK-------LYADDSAP 38
Score = 29.1 bits (64), Expect = 2.0
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Query: 339 QAIRKCVNALKVVS-HSEPEDLSHIK 363
QA++K +LK+ + S P L+ IK
Sbjct: 20 QALKKLQASLKLYADDSAPA-LA-IK 43
>3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase,
manganese, metal-binding, metalloprotease, protease;
2.30A {Alteromonas SP} PDB: 3l7g_A*
Length = 517
Score = 31.3 bits (71), Expect = 0.74
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 9/54 (16%)
Query: 431 AKEHTEILKT---KLTELLGDNGVLVFPAAPESAPY---HYATFFRPY-NFTYW 477
EH L+ ++ E +GV+ + +Y F+ F W
Sbjct: 8 YAEHIATLQKRTREIIERENLDGVVFHSGQAKRQFLDDMYYP--FKVNPQFKAW 59
>2e0w_A Gamma-glutamyltranspeptidase; NTN hydrolase, precursor, gamma-GTP,
post-translational PROC maturation, transferase; 2.55A
{Escherichia coli K12} SCOP: d.153.1.6
Length = 556
Score = 31.0 bits (71), Expect = 1.1
Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
Query: 151 LSNTLGLLARKGKKA-----DADAYIVERVKTAGGIL 182
L+ +L ++A G A+ I + ++ GG++
Sbjct: 203 LAKSLEMIAENGPDEFYKGTIAEQ-IAQEMQKNGGLI 238
>2dg5_A Gamma-glutamyltranspeptidase; gamma-glutamyltransferase, GGT,
gamma-GT, glutathione; HET: GLU; 1.60A {Escherichia coli
K12} SCOP: d.153.1.6 PDB: 2dbu_A 2dbw_A* 2dbx_A* 2e0x_A
2e0y_A 2z8i_A* 2z8j_A* 2z8k_A*
Length = 366
Score = 30.6 bits (70), Expect = 1.1
Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
Query: 151 LSNTLGLLARKGKKA-----DADAYIVERVKTAGGIL 182
L+ +L ++A G A+ I + ++ GG++
Sbjct: 203 LAKSLEMIAENGPDEFYKGTIAEQ-IAQEMQKNGGLI 238
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center
for structural genomics of infectious DISE; HET: SO4;
2.89A {Bacillus anthracis}
Length = 427
Score = 30.7 bits (70), Expect = 1.2
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 6/40 (15%)
Query: 441 KLTELLGDNGVLVFPAAPE---SAPYHYATFFRPY-NFTY 476
+L L D + + A SA HY F P NF Y
Sbjct: 12 RLVNTLPDESITILFAGQAPHMSADAHYK--FVPNRNFYY 49
>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific
enzyme, aminopeptidas manganese enzyme, protease,
manganese; HET: CSO; 1.56A {Escherichia coli} SCOP:
c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A*
1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A*
2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A*
2bwu_A* 2bww_A* ...
Length = 440
Score = 30.7 bits (70), Expect = 1.4
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 6/40 (15%)
Query: 441 KLTELLGDNGVLVFPAAPE---SAPYHYATFFRPY-NFTY 476
L E + + AAPE SA Y +R +F Y
Sbjct: 14 ALVEQMQPGSAALIFAAPEVTRSADSEYP--YRQNSDFWY 51
>2v36_A Gamma-glutamyltranspeptidase large chain; transferase, glutathione
biosynthesis, gamma-glutamyl transferase,
acyltransferase, zymogen; 1.85A {Bacillus subtilis} PDB:
3a75_A*
Length = 376
Score = 30.6 bits (70), Expect = 1.4
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
Query: 151 LSNTLGLLARKGKKA-----DADAYIVERVKTAGGIL 182
L+ T L+ KG A A + + V+ GG +
Sbjct: 199 LAKTFKLIRSKGTDAFYKGKFAKT-LSDTVQDFGGSM 234
>2qmc_A GGT, gamma-glutamyltranspeptidase; NTN-hydrolase, transferase; HET:
GTB; 1.55A {Helicobacter pylori} PDB: 2qm6_A* 3fnm_A*
2nqo_A
Length = 377
Score = 30.3 bits (69), Expect = 1.6
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Query: 151 LSNTLGLLARKGKKA-----DADAYIVERVKTAGGIL 182
L+ TL + G K A+ I + +K GGI+
Sbjct: 214 LAKTLNQIKTLGAKGFYQGQVAEL-IEKDMKKNGGII 249
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase,
aminoglycoside, phosphorylation, transferase-antibiotic
complex; HET: TOY; 1.80A {Enterococcus casseliflavus}
PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A*
3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A*
4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Length = 304
Score = 29.4 bits (66), Expect = 2.7
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 7/59 (11%)
Query: 407 MCTITFSSILKLIDMQLPLPSDQWAKEHTEILKT---KLTELLGDNGVLVFPAAPESAP 462
M T TF + K I+ P + EI + + + + FP +
Sbjct: 1 MRTYTFDQVEKAIEQLYP----DFTINTIEISGEGNDCIAYEINRDFIFKFPKHSRGST 55
>2i3o_A Gamma-glutamyltransferase related protein; structural genomics,
PSI, protein structure initiative; 2.03A {Thermoplasma
acidophilum} SCOP: d.153.1.6
Length = 516
Score = 29.0 bits (66), Expect = 3.8
Identities = 8/39 (20%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 149 KGLSNTLGLLARKGKKA-----DADAYIVERVKTAGGIL 182
L+ + L++ +G ++ AD I+ ++ G L
Sbjct: 186 PDLAESFRLMSEEGFRSFYDGSLADI-IIAGLEGTGSPL 223
>1nm8_A Carnitine O-acetyltransferase; two equally sized domains,
anti-parallel beta-strand; 1.60A {Homo sapiens} SCOP:
c.43.1.3 c.43.1.3 PDB: 1s5o_A* 2h3u_A* 2h3p_A* 1t7q_A*
1t7n_A 1t7o_A* 1ndb_A 1ndf_A* 1ndi_A* 2h3w_A*
Length = 616
Score = 29.0 bits (64), Expect = 4.2
Identities = 42/261 (16%), Positives = 74/261 (28%), Gaps = 62/261 (23%)
Query: 173 ERVKTAGGILLGNTNIPELLWSESRNMVYGQSNNPYNLCRTTGA-----------SSGGE 221
+ K GIL T+ W+++ N + N ++ + +
Sbjct: 221 QTNKEPVGIL---TSNHRNSWAKAYNTLIKDKVNRDSVRSIQKSIFTVCLDATMPRVSED 277
Query: 222 ACLVSACGSVL-GLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYG-------RDG-- 271
G +L G G+ L NR + K V G G +G
Sbjct: 278 VYRSHVAGQMLHGGGSRLNSGNR--------WFDKTLQFIVAEDGSCGLVYEHAAAEGPP 329
Query: 272 -----KEGKSMLAAGPIVKHAEDLLPYSKCL--ILPDKLPAY------NFDKSVDLAKLK 318
+V+ LP K L + ++ + N + +
Sbjct: 330 IVTLLDYVIEYTKKPELVRSPMVPLPMPKKLRFNITPEIKSDIEKAKQNLSIMIQDLDIT 389
Query: 319 VFYVEEPG-----DMKVSPMSKDMIQ-----AIRKCVNALKVVSHSEPEDLSHIKQFRLG 368
V G K+SP + IQ A + + + E + ++ F LG
Sbjct: 390 VMVFHHFGKDFPKSEKLSPDA--FIQMALQLAYYRIYG--QACATYES---ASLRMFHLG 442
Query: 369 YDVWRYWVSKEKDDFCKMLYD 389
S + F K + D
Sbjct: 443 RTDTIRSASMDSLTFVKAMDD 463
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family,
transferase-D complex; HET: DNA MSE ADI; 1.70A
{Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB:
1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A*
1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A*
2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Length = 352
Score = 28.7 bits (65), Expect = 4.5
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 53 DEAFPLPPVKNKIVLESATQIAKKIRNK 80
DEA+ L A + +I+NK
Sbjct: 105 DEAY-LDISDKVRDYREAYNLGLEIKNK 131
>3ce2_A Putative peptidase; structural genomics, unknown function, P
protein structure initiative; 2.60A {Chlamydophila
abortus}
Length = 618
Score = 28.5 bits (64), Expect = 5.7
Identities = 9/65 (13%), Positives = 21/65 (32%), Gaps = 11/65 (16%)
Query: 83 TSVEVVQAFIERIEQ-----------VNPYLNAMVDTRYTEALEEAKAADQKIALEEDIS 131
+ + A ++ I V P L ++ ++ + L A + LE+
Sbjct: 98 ITNQEGIADLKSITHLHTLFAEETSWVQPALTSLSESLIAQHLSAPCLAPYRFYLEKIFR 157
Query: 132 DKPYL 136
+
Sbjct: 158 LSIHT 162
>2nlz_A Cephalosporin acylase; structural genomics, protein structure
initiative, PSI, nysgxrc; 2.70A {Bacillus halodurans}
SCOP: d.153.1.6
Length = 547
Score = 28.6 bits (65), Expect = 5.9
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 6/39 (15%)
Query: 149 KGLSNTLGLLARKGKKA-----DADAYIVERVKTAGGIL 182
+G ++TL +A ++ AD I GG L
Sbjct: 202 QGHADTLRSIAESNGESFYRGELADQ-IHAFFDKHGGYL 239
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide
3-kinase gamma, secondary messenger generation, PI3K, PI
3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP:
a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A*
1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A*
3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A*
3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Length = 961
Score = 28.3 bits (62), Expect = 7.3
Identities = 9/62 (14%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 395 VWWKELIKLPLGMCTITFSSIL--KLIDMQLPLPSDQWAKEHTEILKTKLTELLGDNGVL 452
V W ++ + + + ++L ++ P S + + E +LL +L
Sbjct: 267 VLWNVWLEFSIKIKDLPKGALLNLQIYCGAKPALSGKTSAEMPSPESKGKAQLLYYVNLL 326
Query: 453 VF 454
+
Sbjct: 327 LI 328
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor;
hydrolase, KH, metallo-beta-lactamase; 3.10A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 636
Score = 28.0 bits (63), Expect = 8.1
Identities = 4/23 (17%), Positives = 10/23 (43%)
Query: 277 MLAAGPIVKHAEDLLPYSKCLIL 299
ML G +++ + L ++
Sbjct: 509 MLTGGNSLEYFKWLCEDPDNSLV 531
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit;
metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J
recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10
PDB: 2i7v_A
Length = 459
Score = 28.0 bits (63), Expect = 8.6
Identities = 3/23 (13%), Positives = 9/23 (39%)
Query: 277 MLAAGPIVKHAEDLLPYSKCLIL 299
M+ +G + E + ++
Sbjct: 331 MMQSGLSRELFESWCTDKRNGVI 353
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp
family, KH domain, ribonuclease, ME beta-lactamase
superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB:
3af6_A*
Length = 651
Score = 28.1 bits (63), Expect = 8.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 277 MLAAGPIVKHAEDLLPYSKCLIL 299
ML GP V++ + L P K I+
Sbjct: 524 MLVGGPSVEYFKQLAPDPKNSII 546
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit;
hydrolase, metallo-beta-lactamase, beta-CAsp, RNA
processing; 2.59A {Methanosarcina mazei}
Length = 640
Score = 28.0 bits (63), Expect = 8.9
Identities = 3/23 (13%), Positives = 12/23 (52%)
Query: 277 MLAAGPIVKHAEDLLPYSKCLIL 299
M+ GP++++ + + ++
Sbjct: 513 MMNGGPVMEYFKAFAEDPRNTLV 535
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease,
hydrolase, metal- nuclease, RNA-binding, rRNA
processing; HET: FLC; 2.05A {Thermus thermophilus} PDB:
2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A*
2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Length = 431
Score = 27.8 bits (63), Expect = 9.8
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 277 MLAAGPIVKHAEDLLPYSKCLIL 299
MLA G I+ H + L + ++
Sbjct: 315 MLAGGRILHHLKHGLSDPRNALV 337
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.408
Gapped
Lambda K H
0.267 0.0638 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,825,655
Number of extensions: 477233
Number of successful extensions: 1217
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1178
Number of HSP's successfully gapped: 58
Length of query: 508
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 410
Effective length of database: 3,965,535
Effective search space: 1625869350
Effective search space used: 1625869350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.7 bits)