RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7558
(508 letters)
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Staphylococcus aureus [TaxId: 1280]}
Length = 485
Score = 216 bits (550), Expect = 7e-65
Identities = 110/465 (23%), Positives = 186/465 (40%), Gaps = 32/465 (6%)
Query: 65 IVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKI 124
I ES + I++K I +VV+ + IE+ +P + + + A+++A+ D+
Sbjct: 3 IRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQ 62
Query: 125 ALEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLG 184
A +D D G+P K++ GL T +G ++ ++E++ +L+G
Sbjct: 63 A--KDQMDGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIG 120
Query: 185 NTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNR 243
N+ E + + ++ NP++ G SSGG A V+A L LG+D GGS R
Sbjct: 121 KLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIR 180
Query: 244 IPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDL---------LPYS 294
PA YCGV G K T G V+ G+ S+ GP+ ++ +D +
Sbjct: 181 QPAAYCGVVGMKPTYGRVSRFGLVAF----ASSLDQIGPLTRNVKDNAIVLEAISGADVN 236
Query: 295 KCLILPDKLPAYNFDKSVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHS 354
P + + D+ LKV +E V+ D+ +A++ V LK +
Sbjct: 237 DSTSAPVDDVDFTSEIGKDIKGLKVALPKEYLGEGVAD---DVKEAVQNAVETLKSLGAV 293
Query: 355 -EPEDLSHIKQ-FRLGYDVWRYWVSKEKDDFCKMLYDFKG-EAVWWKELIKL--PLGMCT 409
E L + K Y + S F + Y + EA +EL K+ G
Sbjct: 294 VEEVSLPNTKFGIPSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGK 353
Query: 410 ITFSSILKLIDMQLPLPSDQWAKEHTEI---LKTKLTELLGDNGVLVFPAAPESAPYHYA 466
I D + K+ ++ +K ++ + V+V P AP +A
Sbjct: 354 EVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFENYDVVVGPTAPTTAFNLGE 413
Query: 467 TFFRPY----NFTYWALFNILDFPVTNVPVGLDGKGLPLGVQVIA 507
P N N+ P +VP G G P+G+Q I
Sbjct: 414 EIDDPLTMYANDLLTTPVNLAGLPGISVPCGQS-NGRPIGLQFIG 457
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Thermotoga maritima [TaxId: 2336]}
Length = 475
Score = 190 bits (483), Expect = 3e-55
Identities = 97/455 (21%), Positives = 176/455 (38%), Gaps = 36/455 (7%)
Query: 69 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEE 128
I + ++ ++ Q +E I++++P++ A + R ++E+
Sbjct: 7 RKLTIEECLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVEKKG---------- 56
Query: 129 DISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNI 188
+ G+P K++ G+ T + ++ DA +V+++K AG +++G N+
Sbjct: 57 -----KFWGIPVAIKDNILTLGMRTTCASRILENYESVFDATVVKKMKEAGFVVVGKANL 111
Query: 189 PELLWSESR-NMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPAL 247
E S + + NP++L R G SSGG A VSA V LG+D GGS R PA
Sbjct: 112 DEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPAS 171
Query: 248 YCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPAYN 307
CGV G+K T G V+ G+ S+ GPI K D + + D+ A
Sbjct: 172 LCGVVGYKPTYGLVSRYGLVAF----ASSLDQIGPITKTVRDAAILMEIISGRDENDATT 227
Query: 308 FDKSVD-----LAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHS-EPEDLSH 361
++ VD + P ++ + + + + + + L+ + E + H
Sbjct: 228 VNRKVDFLSEIEEGVSGMKFAVPEEIYEHDIEEGVSERFEEALKLLERLGAKVERVKIPH 287
Query: 362 IKQ-FRLGYDVWRYWVSKEKDDFCKMLYDFKGEAVWWKELIKL--PLGMCTITFSSIL-- 416
IK Y + S F + Y + + +E+ +G I+
Sbjct: 288 IKYSVATYYVIAPAEASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVRRRIMIG 347
Query: 417 -KLIDMQLPLPSDQWAKEHTEILKTKLTELLGDNGVLVFPAAPESAPYH---YATFFRPY 472
+ A + + +L E+L ++ P +P +A
Sbjct: 348 TFTLSAAYYEAYFNKAMKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEIKDPLTYYL 407
Query: 473 NFTYWALFNILDFPVTNVPVGLDGKGLPLGVQVIA 507
+ N+ P +VP G LP+GVQVI
Sbjct: 408 MDIFTIPANLAGLPAISVPFGFS-NNLPVGVQVIG 441
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide
hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 537
Score = 164 bits (414), Expect = 4e-45
Identities = 110/503 (21%), Positives = 194/503 (38%), Gaps = 66/503 (13%)
Query: 57 PLPPVKNKIVLE-SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALE 115
P + ++ +L Q+ +K+++ ++ V ++ + +VN N + +
Sbjct: 29 QNPDLDSEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQ 88
Query: 116 EAKAADQKIALEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERV 175
++A Q GVP + KE + KG +TLGL +G +++D +V+ +
Sbjct: 89 LSQAPRQ----------GLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVL 138
Query: 176 KTAGGILLGNTNIPELLWSESR-NMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGL 234
K G + +TN+P+ + S N ++GQ+ NP+ ++ G SSGGE L+ + GS LGL
Sbjct: 139 KLQGAVPFVHTNVPQSMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGL 198
Query: 235 GTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYS 294
GTD+GGS R P+ +CG+ G K T ++ G+ G + L+ GP+ + E L
Sbjct: 199 GTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCL 258
Query: 295 KCLILPD---------KLPAYNFDKSVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCV 345
K L+ LP +Y + M M + +I+ ++
Sbjct: 259 KALLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYETDNYTMPSPAMRRALIETKQRLE 318
Query: 346 NALKVVSHSEPEDLSHIKQFR--------LGYDVWRYWVSKEKDDFCKMLYDFKGEAVWW 397
A + P ++ + + G + + D L W+
Sbjct: 319 AAGHTLIPFLPNNIPYALEVLSAGGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWF 378
Query: 398 KELIKLPLGMCTITFSSILKLIDMQLPLPSDQWAKEHTEI--LKTKLTELLGDNG--VLV 453
K L+ L L F + ++ P +++ K EI + + VL+
Sbjct: 379 KRLLSLLLKP---LFPRLAAFLNSMRPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVLL 435
Query: 454 FPAAPESAPYHYATFFRPYNFTYWALFNILDFPVTNVPVGL------------------- 494
P A +Y L+N LDFP VPV
Sbjct: 436 TPMLG-PALDLNTPGRATGAISYTVLYNCLDFPAGVVPVTTVTAEDDAQMELYKGYFGDI 494
Query: 495 ----------DGKGLPLGVQVIA 507
+ GLP+ VQ +A
Sbjct: 495 WDIILKKAMKNSVGLPVAVQCVA 517
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas
maltophilia [TaxId: 40324]}
Length = 490
Score = 156 bits (393), Expect = 2e-42
Identities = 84/461 (18%), Positives = 159/461 (34%), Gaps = 29/461 (6%)
Query: 69 SATQIAKKIRNKNITSVEVVQAFIERIE---QVNPYLNAMVDTRYTEALEEAKAADQKIA 125
+ ++ + S + QA+++RI + P L A+++ +AL+EA D++
Sbjct: 8 DVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNP-DALKEAAERDRERR 66
Query: 126 LEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGN 185
P G+P K++ ++ + G LA + DAY+V R++ AG ++LG
Sbjct: 67 DGRLRG--PLHGIPLLLKDNINAAPMATSAGSLALQ-GFRPDDAYLVRRLRDAGAVVLGK 123
Query: 186 TNIPELL------WSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLG 239
TN+ E + GQ+ NPY + + SS G A V+A + + +GT+
Sbjct: 124 TNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAIGTETD 183
Query: 240 GSNRIPALYCGVYGHKLTTGSVNSRGIYGRD------GKEGKSMLAAGPIVKHAEDLLPY 293
GS PA GV G K T G V+ GI G +S+ A ++
Sbjct: 184 GSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAIAGRDDA 243
Query: 294 SKCLILPDKLPAYNFDKSVDLAKLKVFYVEEPGDM-----KVSPMSKDMIQAIRKCVNAL 348
Y++ +D L+ + + P+ + +R+ +
Sbjct: 244 DPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPLLKYRGMPPLIEQAATELRRAGAVV 303
Query: 349 KVVSHSEPEDLSHIKQFRLGYDVWRYWVSKEKDDFCKMLYDFKGEAVWWKELIKLPLGMC 408
V + ++ L Y+ + A +
Sbjct: 304 VPVELPNQGAWAEAERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQELGLFG 363
Query: 409 TITFSSILKLIDMQLPLPSDQWAKEHTEILKTKLTELLGDNGV--LVFPAAPESAPYHYA 466
+ P + + L + + LV P + P
Sbjct: 364 QELLVEADATAGLADPAYIRARSDARRLAGPEGIDAALAAHQLDALVAPTTGVAWPIRSE 423
Query: 467 TFFRPYNFTYWALFNILDFPVTNVPVGLDGKGLPLGVQVIA 507
+ ++ + +P VP+G GLP+G+ +
Sbjct: 424 G--DDFPGESYSAAAVAGYPSLTVPMGQI-DGLPVGLLFMG 461
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum
[TaxId: 375]}
Length = 412
Score = 131 bits (328), Expect = 5e-34
Identities = 85/439 (19%), Positives = 145/439 (33%), Gaps = 50/439 (11%)
Query: 69 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEE 128
S + ++I ++ + IE ++A + + A+A
Sbjct: 3 SLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHA-----FVRHDKSARAQA------- 50
Query: 129 DISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNI 188
P G+ K+ + +G +G + +DA +V +K A G T I
Sbjct: 51 ---SGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRA-----GATII 102
Query: 189 PELLWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALY 248
+ + + + NP+N + G SS G A V A L LGT GGS PA Y
Sbjct: 103 GKTTTTAFASRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSVIRPAAY 162
Query: 249 CGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPAYNF 308
CG K + ++ G AEDL + + F
Sbjct: 163 CGTAAIKPS----FRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSE-----F 213
Query: 309 DKSVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIKQFRLG 368
V ++ V + V P ++ +QA K + + + +R+
Sbjct: 214 SGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVHEAWRIH 273
Query: 369 YDVWRYWVSKEKDDFCKMLYDFKGEAVWWKELIKLPLGMCTITFSSILKLIDMQLPLPSD 428
+ + + +D + + L
Sbjct: 274 PIIQDFEAHRALAWEFSEHHDEIAPMLRASLDATVGLTPKE------------------Y 315
Query: 429 QWAKEHTEILKTKLTELLGDNGVLVFPAAPESAPYHYATFFRPYNFTYWALFNILDFPVT 488
A+ + +L E+ VL+ +AP +AP + Y L+ ++ P
Sbjct: 316 DEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALA--STGDPRYNRLWTLMGNPCV 373
Query: 489 NVPVGLDGKGLPLGVQVIA 507
NVPV G GLP+GVQVIA
Sbjct: 374 NVPVLKVG-GLPIGVQVIA 391
>d2zjrg1 c.21.1.1 (G:30-171) Ribosomal protein L13 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 142
Score = 28.1 bits (62), Expect = 1.4
Identities = 9/51 (17%), Positives = 18/51 (35%)
Query: 62 KNKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTE 112
+ AT IA +IR K+ + + +N A+ + +
Sbjct: 18 SGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDD 68
>d2ebfx1 a.296.1.1 (X:575-874) Dermonecrotic toxin, ToxA
{Pasteurella multocida [TaxId: 747]}
Length = 300
Score = 28.0 bits (62), Expect = 2.9
Identities = 24/162 (14%), Positives = 44/162 (27%), Gaps = 33/162 (20%)
Query: 50 IYKDEAFPLPPVKNKIVLESATQIAKKIR--NKNITSVEVVQAFIERIEQVNPYLNAMVD 107
+ V K + ES +I K++ + + E E +E ++ Y +
Sbjct: 17 WTPEVLKARASVIGKPIGESYKRILAKLQRIHNSNILDERQGLMHELMELIDLYEESQPS 76
Query: 108 TRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADA 167
+ A E L + YL K+ + + KG A
Sbjct: 77 SERLNAFRE---------LRTQLEKALYLPEMEALKKQ---------ILQIPNKGSGAAR 118
Query: 168 DAYIVERVKTAGGILLGNTNIPELLWSESRNMVYGQSN-NPY 208
+ AG SES + + +
Sbjct: 119 FLLRTAMNEMAGK------------TSESTADLIRFALQDTV 148
>d2gych1 c.21.1.1 (H:1-140) Ribosomal protein L13 {Escherichia
coli [TaxId: 562]}
Length = 140
Score = 26.5 bits (58), Expect = 4.9
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 62 KNKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVN 99
K + AT++A+++R K+ + I +N
Sbjct: 21 TGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLN 58
>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 317
Score = 26.7 bits (58), Expect = 8.0
Identities = 18/87 (20%), Positives = 28/87 (32%)
Query: 46 IFSFIYKDEAFPLPPVKNKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAM 105
I S + K E P PP+ V + + E++ F + YL
Sbjct: 222 ISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARDPQRYLVIQ 281
Query: 106 VDTRYTEALEEAKAADQKIALEEDISD 132
D R + + EED+ D
Sbjct: 282 GDERMHLPSPTDSNFYRALMDEEDMDD 308
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.408
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,916,548
Number of extensions: 91660
Number of successful extensions: 263
Number of sequences better than 10.0: 1
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 9
Length of query: 508
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 419
Effective length of database: 1,185,626
Effective search space: 496777294
Effective search space used: 496777294
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.4 bits)