Query psy7560
Match_columns 507
No_of_seqs 362 out of 2613
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 21:33:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7560.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7560hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK07487 amidase; Provisional 100.0 1.5E-74 3.3E-79 619.9 32.3 310 184-500 5-319 (469)
2 COG0154 GatA Asp-tRNAAsn/Glu-t 100.0 2.2E-74 4.8E-79 615.4 30.6 294 183-486 3-307 (475)
3 PRK06170 amidase; Provisional 100.0 1.2E-73 2.5E-78 616.6 33.2 306 181-496 6-326 (490)
4 PRK07486 amidase; Provisional 100.0 4.8E-73 1E-77 610.7 33.0 293 180-482 5-309 (484)
5 PRK06169 putative amidase; Pro 100.0 4.8E-73 1E-77 608.0 32.0 288 183-482 3-301 (466)
6 PRK07042 amidase; Provisional 100.0 1E-72 2.3E-77 605.1 32.4 287 184-484 4-299 (464)
7 PRK08137 amidase; Provisional 100.0 1.2E-72 2.7E-77 609.4 30.1 290 183-486 2-313 (497)
8 TIGR00132 gatA glutamyl-tRNA(G 100.0 1.5E-72 3.2E-77 603.8 29.8 285 192-493 1-295 (460)
9 PRK09201 amidase; Provisional 100.0 1.8E-72 3.8E-77 603.3 30.1 300 184-498 4-314 (465)
10 PRK06102 hypothetical protein; 100.0 2.9E-72 6.2E-77 599.7 31.6 289 185-489 4-296 (452)
11 TIGR02715 amido_AtzE amidohydr 100.0 1.9E-72 4.1E-77 601.3 30.1 296 188-498 1-307 (452)
12 PRK00012 gatA aspartyl/glutamy 100.0 1.6E-72 3.5E-77 603.3 29.5 285 196-492 1-295 (459)
13 PRK07056 amidase; Provisional 100.0 2.7E-72 5.8E-77 600.2 30.8 289 187-490 6-301 (454)
14 PRK07488 indole acetimide hydr 100.0 2.8E-72 6.2E-77 603.0 30.4 286 183-486 7-293 (472)
15 PRK07869 amidase; Provisional 100.0 9.2E-72 2E-76 598.6 30.3 287 182-483 10-300 (468)
16 PF01425 Amidase: Amidase; In 100.0 3.8E-72 8.2E-77 592.7 23.2 288 205-502 1-300 (441)
17 PRK12470 amidase; Provisional 100.0 1.2E-70 2.6E-75 588.4 32.2 288 184-482 6-296 (462)
18 PRK06529 amidase; Provisional 100.0 9.9E-71 2.1E-75 592.5 31.4 295 186-496 3-309 (482)
19 PRK06061 amidase; Provisional 100.0 1.4E-70 3.1E-75 590.8 32.1 290 183-482 14-312 (483)
20 PRK11910 amidase; Provisional 100.0 2.5E-70 5.5E-75 591.6 32.7 299 182-500 160-467 (615)
21 PRK08186 allophanate hydrolase 100.0 1.5E-70 3.3E-75 601.3 30.6 285 186-485 6-297 (600)
22 PRK06828 amidase; Provisional 100.0 4.8E-70 1E-74 585.6 31.0 291 186-485 12-328 (491)
23 PRK06707 amidase; Provisional 100.0 6.3E-69 1.4E-73 580.5 32.2 286 183-483 67-377 (536)
24 PRK05962 amidase; Validated 100.0 6.9E-69 1.5E-73 569.3 27.4 262 208-484 2-265 (424)
25 PRK06565 amidase; Validated 100.0 1.5E-68 3.2E-73 573.9 29.9 291 183-483 3-344 (566)
26 PRK07235 amidase; Provisional 100.0 1.5E-68 3.3E-73 576.3 27.4 298 183-492 21-329 (502)
27 TIGR02713 allophanate_hyd allo 100.0 2.6E-64 5.7E-69 547.2 26.6 252 222-485 2-260 (561)
28 PRK07139 amidase; Provisional 100.0 5.4E-62 1.2E-66 518.3 24.8 249 205-483 6-259 (439)
29 KOG1212|consensus 100.0 1.4E-61 3E-66 511.1 24.7 323 177-507 45-377 (560)
30 PRK08310 amidase; Provisional 100.0 4.9E-59 1.1E-63 489.8 23.1 214 251-482 23-239 (395)
31 KOG1211|consensus 100.0 4.4E-59 9.6E-64 488.0 17.0 282 196-489 27-322 (506)
32 PLN02722 indole-3-acetamide am 100.0 3.8E-58 8.3E-63 485.7 21.2 217 251-482 24-243 (422)
33 PRK06061 amidase; Provisional 99.7 8.2E-18 1.8E-22 181.7 11.4 112 4-115 349-470 (483)
34 PRK06169 putative amidase; Pro 99.7 1.1E-17 2.4E-22 180.0 12.3 113 3-115 338-458 (466)
35 PRK07042 amidase; Provisional 99.7 1.1E-17 2.5E-22 179.9 12.0 112 4-115 336-454 (464)
36 COG0154 GatA Asp-tRNAAsn/Glu-t 99.7 1.1E-17 2.3E-22 179.6 11.0 113 3-115 346-469 (475)
37 PRK12470 amidase; Provisional 99.7 2.3E-17 5.1E-22 177.2 12.0 112 4-115 333-454 (462)
38 PRK06529 amidase; Provisional 99.7 3E-17 6.4E-22 177.4 12.8 107 6-112 341-477 (482)
39 PRK07486 amidase; Provisional 99.7 2.6E-17 5.6E-22 178.0 11.1 112 4-115 351-473 (484)
40 PRK07235 amidase; Provisional 99.7 2.9E-17 6.2E-22 178.0 11.1 99 14-113 395-501 (502)
41 PRK06170 amidase; Provisional 99.7 3.2E-17 7E-22 177.5 11.4 106 9-114 363-483 (490)
42 PRK06102 hypothetical protein; 99.7 6.1E-17 1.3E-21 173.6 11.4 109 4-113 332-449 (452)
43 TIGR02715 amido_AtzE amidohydr 99.7 7.8E-17 1.7E-21 172.8 12.1 108 4-112 330-447 (452)
44 PRK09201 amidase; Provisional 99.7 9.9E-17 2.2E-21 172.6 12.3 110 4-114 337-456 (465)
45 PRK07869 amidase; Provisional 99.7 1.1E-16 2.4E-21 172.4 12.5 102 14-115 353-464 (468)
46 PLN02722 indole-3-acetamide am 99.7 8.4E-17 1.8E-21 170.8 11.3 109 2-111 306-420 (422)
47 PRK08310 amidase; Provisional 99.7 9.2E-17 2E-21 169.4 11.2 109 4-113 280-394 (395)
48 PRK07056 amidase; Provisional 99.7 1.6E-16 3.4E-21 170.5 11.5 109 4-113 334-451 (454)
49 PRK07487 amidase; Provisional 99.7 1.8E-16 4E-21 170.7 11.8 107 8-115 345-459 (469)
50 PRK07488 indole acetimide hydr 99.7 2.1E-16 4.5E-21 170.5 12.0 106 10-115 348-467 (472)
51 TIGR00132 gatA glutamyl-tRNA(G 99.7 2E-16 4.4E-21 170.1 11.4 98 15-112 359-460 (460)
52 PRK07139 amidase; Provisional 99.7 3E-16 6.6E-21 167.6 11.3 98 15-113 334-433 (439)
53 TIGR02713 allophanate_hyd allo 99.7 3.4E-16 7.4E-21 171.1 11.8 113 3-115 296-413 (561)
54 PRK05962 amidase; Validated 99.7 3.4E-16 7.4E-21 166.6 11.5 108 4-113 305-421 (424)
55 PRK08137 amidase; Provisional 99.6 4.9E-16 1.1E-20 168.6 11.6 105 9-115 376-485 (497)
56 PRK00012 gatA aspartyl/glutamy 99.6 4.2E-16 9.1E-21 167.6 10.6 96 15-110 360-459 (459)
57 PRK08186 allophanate hydrolase 99.6 7.1E-16 1.5E-20 170.1 11.7 113 3-115 333-450 (600)
58 PRK06828 amidase; Provisional 99.5 1.5E-13 3.3E-18 148.5 10.8 90 8-114 389-483 (491)
59 PF01425 Amidase: Amidase; In 99.4 4.6E-14 1E-18 149.3 4.7 89 15-103 343-441 (441)
60 KOG1212|consensus 99.4 4.3E-13 9.3E-18 143.3 9.6 101 14-114 424-552 (560)
61 PRK06707 amidase; Provisional 99.3 7.2E-12 1.6E-16 136.5 10.3 81 17-114 447-529 (536)
62 PRK11910 amidase; Provisional 99.1 1.2E-10 2.6E-15 127.5 10.3 82 18-114 523-607 (615)
63 KOG1211|consensus 99.0 9.5E-10 2.1E-14 116.9 8.4 97 15-111 390-493 (506)
64 PRK06565 amidase; Validated 99.0 1.6E-09 3.4E-14 118.0 10.1 101 14-114 442-555 (566)
65 PF11268 DUF3071: Protein of u 43.6 1.5E+02 0.0033 27.8 8.5 32 186-218 56-90 (170)
66 COG2306 Predicted RNA-binding 27.4 1.3E+02 0.0027 28.2 5.1 26 186-211 122-147 (183)
67 PRK15468 carboxysome structura 21.9 1.6E+02 0.0035 25.4 4.3 68 397-477 39-107 (111)
68 PF14237 DUF4339: Domain of un 21.5 33 0.00071 24.3 0.1 22 186-207 13-34 (45)
69 COG1049 AcnB Aconitase B [Ener 20.8 47 0.001 37.0 1.1 37 367-410 383-420 (852)
No 1
>PRK07487 amidase; Provisional
Probab=100.00 E-value=1.5e-74 Score=619.85 Aligned_cols=310 Identities=28% Similarity=0.375 Sum_probs=278.7
Q ss_pred ccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCeeEEecCcHHHHHHHHHHHHHHHccCCCCCCCCCCccEEEec
Q psy7560 184 IVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSKE 263 (507)
Q Consensus 184 ~~~~s~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~~~~~~pL~GiP~~vKD 263 (507)
+..+|+.+|+++|++|++|++||++++++||++.|+.+||++++++|+|+++|+++|+++++|+. .+||+||||+|||
T Consensus 5 ~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~~g~~--~gpL~GvPi~vKD 82 (469)
T PRK07487 5 LWRLSAAELAAAVRSRDVSAREAAEAALARLDAVNPAINAVVDHRPEEALAQADAVDAARARGDD--PGPLAGVPVTVKV 82 (469)
T ss_pred hhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHHHHHHHHHHhHHHHhcCCC--CCCcCCCEEEEec
Confidence 56679999999999999999999999999999999999999999999999999999999888776 5999999999999
Q ss_pred CCCCCCCcCCcCcccccCCCCCCcHHHHHHHHHcCCeEEEccccCCcC-CCCCCCCCCCCCCCCCCCCCCCCCCCchhHH
Q psy7560 264 STACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGGEAC 342 (507)
Q Consensus 264 ~~~v~G~~tt~Gs~~~~~~~~~~da~~V~~L~~aGAii~GkTn~~e~~-~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaa 342 (507)
+|+|+|++||+||..+.++++.+||++|+||+++|||++||||||||+ +.++.|++||.|+||||++|+|||||||||+
T Consensus 83 ~~~v~G~~tt~Gs~~~~~~~~~~da~vV~rLr~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~d~~~~~GGSSgGsAa 162 (469)
T PRK07487 83 NVDQAGFATTNGVRLQKDLIAPADSPVVDNLRKAGAVIIGRTNTPAFSYRWFTDNPLHGRTLNPWDPSLTPGGSSGGAAA 162 (469)
T ss_pred ccccCCCccCcchHHhcCCCCCCchHHHHHHHHCCCEEEEecChhhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHH
Confidence 999999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred hhhcCCCceeeeccCCCcccccccccCcceeecCCCCccCCCCCCCCC-CCCCCcceeccccCChhhHHHHHHHhcCCCC
Q psy7560 343 LVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDG-KEGKSMLAAGPIVKHAEDLLPYSKCLILPDK 421 (507)
Q Consensus 343 aVaag~~~~alGtDtgGSiR~PAa~~Gv~G~kPt~G~v~~~G~~p~~~-~~~~~~~~~Gp~ar~v~D~~~~~~~l~~~~~ 421 (507)
+||+|++++|+|||||||||+||+||||||||||+|++|..|+++... ....++|++|||||||+|+++++++|.++++
T Consensus 163 AVAaG~~~~alGtDtgGSIRiPAa~cGvvGlKPT~G~is~~g~~~~~~~l~~~~~~~~Gplarsv~D~a~~~~~l~g~d~ 242 (469)
T PRK07487 163 AVAAGIGAIAHGTDIGGSIRYPAYACGVHGLRPTLGRVPAYNASSPERPIGAQLMSVQGPLARTVADLRLALAAMAAPDP 242 (469)
T ss_pred HHHcCCCceeeecCCCCccccchhhcCceeecCCCCccCCCCCCccccccccccccccCCeeCCHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999999999874211 0112688999999999999999999999988
Q ss_pred CCCCCCCcc--CCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcC-CCCchHHHHHHHHHHHhhc
Q psy7560 422 LPAYNFDKS--VDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLS-HIKQFRLGYDVWRYWVSKE 498 (507)
Q Consensus 422 ~d~~~~~~~--~~~~~lrig~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~G~~v~~~~-~~p~~~~~~~~~~~~~~~d 498 (507)
.|+...+.+ .+.+++|||++.+.+ ...++++++++++++++.|+++ |++|++ + ++|.+.+....|..++..|
T Consensus 243 ~d~~~~~~~~~~~~~~lrig~~~~~~---~~~~~~~v~~a~~~a~~~L~~~-G~~v~~-~~~~~~~~~~~~~~~~~~~~e 317 (469)
T PRK07487 243 RDPWWVPAPLEGPPRPKRVALCVRPD---GLDVDPEVEAALRDAARRLEDA-GWTVEE-VDDTPPLREAAELQERLWLGD 317 (469)
T ss_pred CCCccCCCCccCCCCCcEEEEECCCC---CCCCCHHHHHHHHHHHHHHHHC-CCEEEe-cCCCCchHHHHHHHHHHHHHH
Confidence 777654322 235789999997643 3468999999999999999996 999999 8 8888777766665555544
Q ss_pred Cc
Q psy7560 499 KD 500 (507)
Q Consensus 499 ~~ 500 (507)
..
T Consensus 318 ~~ 319 (469)
T PRK07487 318 GY 319 (469)
T ss_pred HH
Confidence 43
No 2
>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-74 Score=615.40 Aligned_cols=294 Identities=34% Similarity=0.490 Sum_probs=271.2
Q ss_pred cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCeeEEecCcHHHHH--HHHHHHHHHHccCCCCCCCCCCccEE
Q psy7560 183 KIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALE--EAKAADQKIALEEDISDKPYLGVPFT 260 (507)
Q Consensus 183 ~~~~~s~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~al~--~A~~~d~~~~~~~~~~~~pL~GiP~~ 260 (507)
.+..+++.+|+++++++++|++|+++++++||++.|+.+|+++....+.++. +|+++|+++++|.. .+||+||||+
T Consensus 3 ~~~~~~~~~l~~~~~~~~~s~~e~~~~~l~ri~~~~~~~na~~~~~~e~a~~~~~A~~~d~~~~~g~~--~gpL~GvPia 80 (475)
T COG0154 3 ALTELTAAELAALLRAKELSAVELVEAYLARIEALNPDLNAFVAVDPEAALALAEAAAADARLAAGEP--LGPLAGVPIA 80 (475)
T ss_pred chhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCEEEEeChhhcchHHHHHHHHHHHhcCCC--CCCcCCceEE
Confidence 3556799999999999999999999999999999999999999999998865 99999999998855 5999999999
Q ss_pred EecCCCCCCCcCCcCcccccCCCCCCcHHHHHHHHHcCCeEEEccccCCcC-CCCCCCCCCCCCCCCCCCCCCCCCCCch
Q psy7560 261 SKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGG 339 (507)
Q Consensus 261 vKD~~~v~G~~tt~Gs~~~~~~~~~~da~~V~~L~~aGAii~GkTn~~e~~-~~~~~n~~~G~~~NP~~~~~~~GGSSgG 339 (507)
|||||+|+|++||+||+.++++++++||++|+||+++|||++||||||||+ +..+.|++||.|+||||++|+|||||||
T Consensus 81 vKDn~~~~G~~Tt~gS~~l~~~~p~~DA~vV~rL~~aGaviiGKTNm~Efa~g~~~~~s~~G~t~NP~~~~~~pGGSSgG 160 (475)
T COG0154 81 VKDNIDTAGLPTTAGSKALEDYVPPYDATVVERLRAAGAVILGKTNMDEFAMGSSTENSAFGPTRNPWNLERVPGGSSGG 160 (475)
T ss_pred EeeccccCCCccCccChhhccCCCCcCcHHHHHHHHCCCEEEeecCCchhhcCCCCCCCCCCCCCCCCCCCCCCCcCchH
Confidence 999999999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred hHHhhhcCCCceeeeccCCCcccccccccCcceeecCCCCccCCCCCCCCCCCCCCcceeccccCChhhHHHHHHHhcCC
Q psy7560 340 EACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILP 419 (507)
Q Consensus 340 saaaVaag~~~~alGtDtgGSiR~PAa~~Gv~G~kPt~G~v~~~G~~p~~~~~~~~~~~~Gp~ar~v~D~~~~~~~l~~~ 419 (507)
||++||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++ ++|++|||||||+|+++++++|.|+
T Consensus 161 SAaAVAag~~~~alGSDtGGSIR~PAa~cGvvGlKPT~Grvsr~g~~~~a~----sld~~GplartV~D~a~l~~v~~g~ 236 (475)
T COG0154 161 SAAAVAAGLVPLALGSDTGGSIRIPAAFCGLVGLKPTYGRVSRYGVVPLAS----SLDQIGPLARTVRDAALLLDVIAGP 236 (475)
T ss_pred HHHHHHhCCcchhcccCCCCchhhhhhhhCceeeCCCCCccCCCCCccccC----CcCccCcccCCHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999998 8999999999999999999999999
Q ss_pred CCCCC-CCC----C---ccCCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCCchHH
Q psy7560 420 DKLPA-YNF----D---KSVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIKQFRL 486 (507)
Q Consensus 420 ~~~d~-~~~----~---~~~~~~~lrig~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~G~~v~~~~~~p~~~~ 486 (507)
|+.|. ... . ...+++++|||++.+.+ ...+.+++++++++++++.|+++ |++|++ +++|.+..
T Consensus 237 D~~d~~~~~~~~~~~~~~~~~~~~lrigv~~~~~--~~~~~~~~v~~~~~~a~~~l~~~-Ga~v~~-v~lp~~~~ 307 (475)
T COG0154 237 DPRDSPLPPPPPVPPALAGKDLKGLRIGVPKELG--GGGPLDPDVRAAFEAAVKALEAA-GAEVVE-VSLPLLSD 307 (475)
T ss_pred CCcccccccccCccchhhccCCCCcEEEEECccc--ccCCCcHHHHHHHHHHHHHHHHC-CCEEEe-ccCCchhh
Confidence 98773 221 1 11246789999998754 22467899999999999999996 999999 99995443
No 3
>PRK06170 amidase; Provisional
Probab=100.00 E-value=1.2e-73 Score=616.61 Aligned_cols=306 Identities=33% Similarity=0.472 Sum_probs=273.4
Q ss_pred cccccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCeeEEecCcHHHHHHHHHHHHHHHccCCCCCCCCCCccEE
Q psy7560 181 KNKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFT 260 (507)
Q Consensus 181 ~~~~~~~s~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~~~~~~pL~GiP~~ 260 (507)
.+++..+|+.||+++|++|++|++||++++++||+++|+.+||++++++|+|+++|+++|++++++ . .+|||||||+
T Consensus 6 ~~~~~~~s~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~~g-~--~gpL~GvPv~ 82 (490)
T PRK06170 6 ADEWSFLPATELAAALAAGEVSSVELTDLAIARIERHDGKINAIVVRDFDRARAAARAADAARARG-E--RGPLLGIPVT 82 (490)
T ss_pred cchhhhcCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCcCEEEECCHHHHHHHHHHHHHHHhcC-C--CCCcCCceEE
Confidence 345777899999999999999999999999999999999999999999999999999999998877 3 4999999999
Q ss_pred EecCCCCCCCcCCcCcccccCCCCCCcHHHHHHHHHcCCeEEEccccCCcC-CCCCCCCCCCCCCCCCCCCCCCCCCCch
Q psy7560 261 SKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGG 339 (507)
Q Consensus 261 vKD~~~v~G~~tt~Gs~~~~~~~~~~da~~V~~L~~aGAii~GkTn~~e~~-~~~~~n~~~G~~~NP~~~~~~~GGSSgG 339 (507)
|||+|+|+|++||+||..+.++++.+|+++|+||+++|||++||||||||+ +.++.|++||+|+||||++|+|||||||
T Consensus 83 VKD~~~v~G~~tt~Gs~~~~~~~~~~da~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgG 162 (490)
T PRK06170 83 VKESFNVAGLPTTWGFPDLRDYVPAEDAVAVARLKAAGAVILGKTNVPLGLQDWQSYNEIYGTTNNPWDLARTPGGSSGG 162 (490)
T ss_pred EecccccCCcccCCCChhhcCCCCCccHHHHHHHHHCCCEEEEecCChhhccCCCccCCCCCCCCCCCCCCCCCCCChHH
Confidence 999999999999999999999999999999999999999999999999999 8899999999999999999999999999
Q ss_pred hHHhhhcCCCceeeeccCCCcccccccccCcceeecCCCCccCCCCCC-----CCCCCCCCcceeccccCChhhHHHHHH
Q psy7560 340 EACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYG-----RDGKEGKSMLAAGPIVKHAEDLLPYSK 414 (507)
Q Consensus 340 saaaVaag~~~~alGtDtgGSiR~PAa~~Gv~G~kPt~G~v~~~G~~p-----~~~~~~~~~~~~Gp~ar~v~D~~~~~~ 414 (507)
||++||+|++++|+|||||||||+||+||||||||||+|+||+.|++| +.. ..++|++|||||||+|++++++
T Consensus 163 sAaAVAaG~~~~alGtDtgGSiRiPAa~cGvvG~KPT~Grv~~~G~~~~~~~~~~~--~~~~d~~Gp~arsv~D~a~~l~ 240 (490)
T PRK06170 163 SAAALAAGFGALSIGSDIGGSLRVPAHYCGVYAHKPTLGLVPLRGHIPPPAPALPG--QADLAVAGPMARSARDLALLLD 240 (490)
T ss_pred HHHHHHcCCCceeeecCCCCccccChHHhCceeecCCCCcCcCCCcCCcccccccc--ccccccccCccCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988 321 1268999999999999999999
Q ss_pred HhcCCCCCCCC---CCCcc----CCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC--CCchH
Q psy7560 415 CLILPDKLPAY---NFDKS----VDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSH--IKQFR 485 (507)
Q Consensus 415 ~l~~~~~~d~~---~~~~~----~~~~~lrig~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~G~~v~~~~~--~p~~~ 485 (507)
+|.|+|+.|+. ....+ .+.+++|||++.+++ ...++++++++++++++.|+++ |++|++ ++ +|.+.
T Consensus 241 ~l~g~d~~d~~~~~~~~~~~~~~~~~~~lrig~~~~~~---~~~~~~~v~~a~~~a~~~L~~~-G~~v~~-~~~~~~~~~ 315 (490)
T PRK06170 241 VMAGPDPLDGGVAYRLALPPARHGRLKDFRVLVLDEHP---LLPTDAAVRAAIERLAAALADA-GARVVR-HSPLLPDLA 315 (490)
T ss_pred HHhCCCccccccccccCCCcccccccCCCEEEEECCcC---CCCCCHHHHHHHHHHHHHHHHC-CCEEEE-cCCCCCchH
Confidence 99999876622 21111 135789999997643 4568999999999999999996 999999 86 45556
Q ss_pred HHHHHHHHHHh
Q psy7560 486 LGYDVWRYWVS 496 (507)
Q Consensus 486 ~~~~~~~~~~~ 496 (507)
.....|..++.
T Consensus 316 ~~~~~~~~~~~ 326 (490)
T PRK06170 316 ESARLYMRLLF 326 (490)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 4
>PRK07486 amidase; Provisional
Probab=100.00 E-value=4.8e-73 Score=610.73 Aligned_cols=293 Identities=29% Similarity=0.402 Sum_probs=267.1
Q ss_pred ccccccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCeeEEecCc-HHHHHHHHHHHHHHHccCCCCCCCCCCcc
Q psy7560 180 VKNKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRY-TEALEEAKAADQKIALEEDISDKPYLGVP 258 (507)
Q Consensus 180 ~~~~~~~~s~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~-~~al~~A~~~d~~~~~~~~~~~~pL~GiP 258 (507)
..+++..+|+.+|+++|++|++|++||++++++||+++|+.+||+++++. +.++++|+++|+++++|.. .+||||||
T Consensus 5 ~~~~~~~~~~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~~al~~A~~~d~~~~~g~~--~gpL~GvP 82 (484)
T PRK07486 5 PPDPIVRLSAHALSRAIRRRQVSCVEVMRAYLAHIERVNPAVNAIVALRDRDALLAEAAEKDAALARGEY--RGWLHGMP 82 (484)
T ss_pred ChhhhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCceEEEeCccHHHHHHHHHHHHHHhcCCC--CCCcCCCe
Confidence 34567788999999999999999999999999999999999999999876 4569999999999988876 59999999
Q ss_pred EEEecCCCCCCCcCCcCcccccCCCCCCcHHHHHHHHHcCCeEEEccccCCcC-CCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy7560 259 FTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASS 337 (507)
Q Consensus 259 ~~vKD~~~v~G~~tt~Gs~~~~~~~~~~da~~V~~L~~aGAii~GkTn~~e~~-~~~~~n~~~G~~~NP~~~~~~~GGSS 337 (507)
|+|||+|+|+|++||+||..++++++.+||++|+||+++|||++||||||||+ +..+.|++||.|+||||++|+|||||
T Consensus 83 i~vKD~~~v~G~~tt~Gs~~~~~~~~~~dA~vV~rLr~AGaii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSS 162 (484)
T PRK07486 83 QAPKDLAPTKGIRTTLGSPIFADQVPQEDAIVVERMRAAGAIFIGKTNTPEFGLGSHTYNPVYGATRNPYDPSRSAGGSS 162 (484)
T ss_pred EEEecccccCCcCcccccHhhCCCCCCCcHHHHHHHHHCCCeeEEecCchHHhcCCCCCCCCCCCCCCCCCCCCCCCcCc
Confidence 99999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred chhHHhhhcCCCceeeeccCCCcccccccccCcceeecCCCCccCCCCC-CCCCCCCCCcceeccccCChhhHHHHHHHh
Q psy7560 338 GGEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIY-GRDGKEGKSMLAAGPIVKHAEDLLPYSKCL 416 (507)
Q Consensus 338 gGsaaaVaag~~~~alGtDtgGSiR~PAa~~Gv~G~kPt~G~v~~~G~~-p~~~~~~~~~~~~Gp~ar~v~D~~~~~~~l 416 (507)
||||++||+|++++|+|||||||||+||+||||||||||+|+||..|.. ++++ ++|++|||||||+|+++++++|
T Consensus 163 gGsAaaVAaG~~~~aiGtDtgGSIRiPAa~cGvvGlKPT~G~vs~~g~~~~~~~----s~d~~Gp~arsv~D~a~~~~~l 238 (484)
T PRK07486 163 GGAAAALALRMLPVADGSDMMGSLRNPAAFNNVYGFRPSQGRVPHGPGGDVFVQ----QLGTEGPMGRTVEDVALLLAVQ 238 (484)
T ss_pred HHHHHHHHcCCCceEeecCCCCCeecchhhhCceeecCCCCcccCCCCcccccc----cccccCCeeCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999855 5666 8999999999999999999999
Q ss_pred cCCCCCCCCCCCcc---------CCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCC
Q psy7560 417 ILPDKLPAYNFDKS---------VDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIK 482 (507)
Q Consensus 417 ~~~~~~d~~~~~~~---------~~~~~lrig~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~G~~v~~~~~~p 482 (507)
.|+|+.|+.+...+ .+.+++|||++.+.. ....++++++++++++++.|+++ |++|++ +.++
T Consensus 239 ~g~d~~d~~~~~~~~~~~~~~~~~~~~~lrigv~~~~~--~~~~~~~~v~~a~~~a~~~L~~~-G~~v~~-~~~~ 309 (484)
T PRK07486 239 AGYDPRDPLSLAEDPARFAQPLEADLRGKRIAWLGDWG--GYLPMEAGVLELCEAALATLREL-GCDVEA-ALPA 309 (484)
T ss_pred hCCCCCCCccccCCCcchhhHhccCCCCCEEEEeCccc--CCCCCCHHHHHHHHHHHHHHHHC-CCEEEE-eCCC
Confidence 99988777644211 135789999986421 12357999999999999999996 999998 8765
No 5
>PRK06169 putative amidase; Provisional
Probab=100.00 E-value=4.8e-73 Score=608.04 Aligned_cols=288 Identities=27% Similarity=0.385 Sum_probs=265.9
Q ss_pred cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCeeEEecCcHHHHHHHHHHHHHHHccCCCCCCCCCCccEEEe
Q psy7560 183 KIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSK 262 (507)
Q Consensus 183 ~~~~~s~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~~~~~~pL~GiP~~vK 262 (507)
++..+++.+|+++|++|++|++||+++|++||+++|+.+||++++++++|+++|+++|+++++|.. .+|||||||+||
T Consensus 3 ~~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~--~gpL~GvPi~vK 80 (466)
T PRK06169 3 DLADLTAVELLAAYRRGELSPVEATQAVLDRIDRRDPAVNAFCLVDAEGALAAARASEERWRRGEP--CGLLDGVPVSIK 80 (466)
T ss_pred chhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCEEEEeCHHHHHHHHHHHHHHHhcCCC--CCCcCCceEEEe
Confidence 356779999999999999999999999999999999999999999999999999999999988876 599999999999
Q ss_pred cCCCCCCCcCCcCcccccCCCC-CCcHHHHHHHHHcCCeEEEccccCCcC-CCCCCCCCCCCCCCCCCCCCCCCCCCchh
Q psy7560 263 ESTACKGLSNTLGLLARKGKKA-DADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGGE 340 (507)
Q Consensus 263 D~~~v~G~~tt~Gs~~~~~~~~-~~da~~V~~L~~aGAii~GkTn~~e~~-~~~~~n~~~G~~~NP~~~~~~~GGSSgGs 340 (507)
|||+|+|++||+||..+.++.+ .+||++|++|+++|||++||||||||+ +.++.|++||+|+||||++|+||||||||
T Consensus 81 D~~~v~G~~tt~Gs~~~~~~~p~~~da~vV~~Lr~aGAii~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~~~GGSSgGs 160 (466)
T PRK06169 81 DIFLTRGWPTLRGSRAIDADGPWDVDAPAVARLREAGAVLLGKTTTPEFGWKGVTDSPLYGITRNPWDTRLTAGGSSGGA 160 (466)
T ss_pred cccccCCcccCccChhhccCCCCCCCHHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHH
Confidence 9999999999999999987766 699999999999999999999999999 99999999999999999999999999999
Q ss_pred HHhhhcCCCceeeeccCCCcccccccccCcceeecCCCCccCCCCCCCCCCCCCCcceeccccCChhhHHHHHHHhcCCC
Q psy7560 341 ACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPD 420 (507)
Q Consensus 341 aaaVaag~~~~alGtDtgGSiR~PAa~~Gv~G~kPt~G~v~~~G~~p~~~~~~~~~~~~Gp~ar~v~D~~~~~~~l~~~~ 420 (507)
|++||+|++++|+|||||||||+||+|||+||||||+|++|+.|+.+.+ ++|++|||||+|+|+++++++|.|++
T Consensus 161 AaaVAaG~~~~alGtDtgGSiRiPAa~cGv~G~KPT~G~vs~~g~~~~~-----~~d~~Gp~arsv~D~~~~~~~l~g~~ 235 (466)
T PRK06169 161 AAAVALGMGPLSVGTDGGGSVRIPASFCGTFGFKPTFGRVPLYPASPFG-----TLAHVGPMTRTVADAALLLDVIARPD 235 (466)
T ss_pred HHHHHcCCCceeeecCCCCcchhchHhhCceeecCCCCccCCCCCCCCc-----cccccCCeeCCHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999987753 79999999999999999999999988
Q ss_pred CCCCCCCCcc---------CCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCC
Q psy7560 421 KLPAYNFDKS---------VDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIK 482 (507)
Q Consensus 421 ~~d~~~~~~~---------~~~~~lrig~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~G~~v~~~~~~p 482 (507)
+.|+...+.+ .+.+++|||+..+++ ...++++++++++++++.|+++ |++|++ ++++
T Consensus 236 ~~d~~~~~~~~~~~~~~~~~~~~~lrig~~~~~~---~~~~~~~v~~a~~~a~~~L~~~-G~~v~~-~~~~ 301 (466)
T PRK06169 236 ARDWSALPPPTTSFLDALDRDVRGLRIAYSPTLG---YVDVDPEVAALVAQAVQRLAAL-GARVEE-VDPG 301 (466)
T ss_pred CCCCcccCCCCcchhhhhccCCCCCEEEEECCcC---CCCCCHHHHHHHHHHHHHHHHc-CCEEEE-eCCC
Confidence 7776544321 135789999987643 4568999999999999999996 999999 8865
No 6
>PRK07042 amidase; Provisional
Probab=100.00 E-value=1e-72 Score=605.14 Aligned_cols=287 Identities=27% Similarity=0.366 Sum_probs=263.1
Q ss_pred ccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCeeEEecCcHHHHHHHHHHHHHHHccCCCCCCCCCCccEEEec
Q psy7560 184 IVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSKE 263 (507)
Q Consensus 184 ~~~~s~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~~~~~~pL~GiP~~vKD 263 (507)
+..+|+.+|++++++|++|++||+++|++||+++|+.+||++++++++|+++|+++|+++++|.. .+|||||||+|||
T Consensus 4 ~~~~~~~~l~~~~~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~d~al~~A~~~d~~~~~g~~--~gpL~GvPi~vKD 81 (464)
T PRK07042 4 LHDLSAVELLAGYRARSLSPVEVTEAVLAHIARWEPHLNALYAFDPEAARAAARASTARWAKGEP--LGPLDGVPVTIKE 81 (464)
T ss_pred hhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEcCHHHHHHHHHHHHHHHHcCCC--CCCcCCCEEEEEc
Confidence 45679999999999999999999999999999999999999999999999999999999988876 5999999999999
Q ss_pred CCCCCCCcCCcCcccccCCCCCCcHHHHHHHHHcCCeEEEccccCCcC-CCCCCCCCCCCCCCCCCCCCCCCCCCchhHH
Q psy7560 264 STACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGGEAC 342 (507)
Q Consensus 264 ~~~v~G~~tt~Gs~~~~~~~~~~da~~V~~L~~aGAii~GkTn~~e~~-~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaa 342 (507)
+|+|+|++||+||..+.++++.+||++|++|+++|||++||||||||+ +..+.|++||+|+||||++|+|||||||||+
T Consensus 82 ~~~v~G~~tt~Gs~~~~~~~~~~dA~vV~~Lr~aGAiilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAa 161 (464)
T PRK07042 82 NIATRGVPVPLGTAATDLPPAAADAPPAARLREAGAVILAKTTMPDYGMLSSGLSSFHGLTRNPWDLDQNPGGSSAGAGA 161 (464)
T ss_pred ccccCCcccCCCChhhcCCCCCcchHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCcCCCCCCCCCCCCChHHHHH
Confidence 999999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred hhhcCCCceeeeccCCCcccccccccCcceeecCCCCccCCCCCCCCCCCCCCcceeccccCChhhHHHHHHHhcCCCCC
Q psy7560 343 LVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKL 422 (507)
Q Consensus 343 aVaag~~~~alGtDtgGSiR~PAa~~Gv~G~kPt~G~v~~~G~~p~~~~~~~~~~~~Gp~ar~v~D~~~~~~~l~~~~~~ 422 (507)
+||+|++++|+|||||||||+||+||||||||||+|+||..|.. +.|++|||||+|+|+++++++|.++++.
T Consensus 162 aVAaG~~~~alGtDtgGSIRiPAa~cGvvG~KPT~Grv~~~g~~--------~~d~~Gp~arsv~D~a~~l~vl~g~d~~ 233 (464)
T PRK07042 162 AAAAGYGPLHLGTDIGGSVRLPAGWCGIVGLKPSLGRIPIDPPY--------TGRCAGPMTRTVDDAALLMSVLSRPDAR 233 (464)
T ss_pred HHHcCCCceeeecCCCCccccchHhhCceeecCCCCccCCCCCc--------cccccCCccCCHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999988732 4579999999999999999999999887
Q ss_pred CCCCCCcc--------CCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCCch
Q psy7560 423 PAYNFDKS--------VDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIKQF 484 (507)
Q Consensus 423 d~~~~~~~--------~~~~~lrig~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~G~~v~~~~~~p~~ 484 (507)
|+...+.+ ...+++|||++.+++ ....++++++++++++++.|+++ |++|++ ++++..
T Consensus 234 d~~~~~~~~~~~~~~~~~~~~lrigv~~~~~--~~~~~~~~v~~a~~~a~~~L~~~-G~~v~~-~~~~~~ 299 (464)
T PRK07042 234 DGTSLPPQDIDWSDLDIDVRGLRIGLMLDAG--CGLAVDPEVRAAVEAAARRFEAA-GAIVEP-VPPFLT 299 (464)
T ss_pred CccccCCCCcChhhhccCcCCCEEEEECccc--CCCCCCHHHHHHHHHHHHHHHHC-CCEEEE-eCCchh
Confidence 76644321 134779999987533 22368999999999999999996 999999 885543
No 7
>PRK08137 amidase; Provisional
Probab=100.00 E-value=1.2e-72 Score=609.36 Aligned_cols=290 Identities=23% Similarity=0.311 Sum_probs=264.8
Q ss_pred cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHh---CCCCeeEEecCcHHHHHHHHHHHHHHHccCCCCCCCCCCccE
Q psy7560 183 KIVLESATQIAKKIRNKNITSVEVVQAFIERIEQV---NPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPF 259 (507)
Q Consensus 183 ~~~~~s~~~l~~~l~~g~~t~~ev~~~~l~ri~~~---~~~~na~~~~~~~~al~~A~~~d~~~~~~~~~~~~pL~GiP~ 259 (507)
++..+|+.+|+++|++|++|++||++++++||+++ |+.+||+++++. +|+++|+++|+++++|.. ++||+||||
T Consensus 2 ~~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~~~lna~~~~~~-~al~~A~~~d~~~~~g~~--~gpL~GvPi 78 (497)
T PRK08137 2 TALEERAGALQAAMPAGAAPASQLTRAYLQRIARIDRDGPRLNAVIELNP-DAEADAAALDAERKAGKV--RGPLHGIPV 78 (497)
T ss_pred chhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceeEEEEeCH-HHHHHHHHHHHHHhcCCC--CCCcCCcee
Confidence 45678999999999999999999999999999987 678999999876 599999999999888876 599999999
Q ss_pred EEecCCCCC-CCcCCcCcccccCCCCCCcHHHHHHHHHcCCeEEEccccCCcC-CCC-----CCCCCCCCCCCCCCCCCC
Q psy7560 260 TSKESTACK-GLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-WSE-----SRNMVYGQSNNPYNLCRT 332 (507)
Q Consensus 260 ~vKD~~~v~-G~~tt~Gs~~~~~~~~~~da~~V~~L~~aGAii~GkTn~~e~~-~~~-----~~n~~~G~~~NP~~~~~~ 332 (507)
+|||+|+|+ |++||+||..+.++++.+||++|+||+++|||++||||||||+ +.. +.|++||+|+||||++|+
T Consensus 79 ~vKD~~~v~~G~~tt~Gs~~~~~~~~~~DA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~g~n~~~G~t~NP~~~~~~ 158 (497)
T PRK08137 79 LLKDNIDAADPMPTTAGSLALAGNRPTRDAFLVARLRDAGAVILGKANLSEWANFRSTRSSSGWSARGGLTRNPYALDRS 158 (497)
T ss_pred eeecceeecCCCCcCcCcHhhcCCCCCcCcHHHHHHHHCCCEEEeecChHHhhccCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 999999999 9999999999999999999999999999999999999999999 543 479999999999999999
Q ss_pred CCCCCchhHHhhhcCCCceeeeccCCCcccccccccCcceeecCCCCccCCCCCCCCCCCCCCcceeccccCChhhHHHH
Q psy7560 333 TGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPY 412 (507)
Q Consensus 333 ~GGSSgGsaaaVaag~~~~alGtDtgGSiR~PAa~~Gv~G~kPt~G~v~~~G~~p~~~~~~~~~~~~Gp~ar~v~D~~~~ 412 (507)
|||||||||++||+|++++|+|||||||||+||+||||||||||+|++|+.|++|+++ ++|++|||||+|+|++++
T Consensus 159 ~GGSSgGsAaAVAaG~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~Grvs~~G~~~~~~----s~d~~Gp~arsv~D~a~~ 234 (497)
T PRK08137 159 PCGSSSGSGAAVAAGLAAVAIGTETDGSITCPAAINGLVGLKPTVGLVSRDGIVPISH----SQDTAGPMTRTVADAAAV 234 (497)
T ss_pred CCcCccHHHHHHHcCCCceeeecCCCCccccchhhcCeeeecCCCCceeCCCCCCccc----ccCcccCeeCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999887 899999999999999999
Q ss_pred HHHhcCCCCCCCCCCCcc------------CCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Q psy7560 413 SKCLILPDKLPAYNFDKS------------VDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSH 480 (507)
Q Consensus 413 ~~~l~~~~~~d~~~~~~~------------~~~~~lrig~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~G~~v~~~~~ 480 (507)
+++|.|+++.|+.....+ ...+++|||++.+. . .++++++++++++++.|+++ |++|++ ++
T Consensus 235 l~vl~g~d~~d~~~~~~~~~~~~~~~~~~~~~~~~lrIgv~~~~----~-~~~~~v~~a~~~a~~~L~~~-G~~v~~-~~ 307 (497)
T PRK08137 235 LTAIAGGDPADPATASAPAPAVDYVAALDADALRGARLGVARNY----L-GYHPEVDAQFERALAELKAA-GAVVID-VV 307 (497)
T ss_pred HHHHhCCCCCCcccccCCCCccchhhhccccccCCCEEEEEchh----c-cCCHHHHHHHHHHHHHHHHC-CCEEEe-cc
Confidence 999999988776643211 02578999998641 2 47999999999999999996 999999 98
Q ss_pred CCchHH
Q psy7560 481 IKQFRL 486 (507)
Q Consensus 481 ~p~~~~ 486 (507)
+|.+..
T Consensus 308 ~~~~~~ 313 (497)
T PRK08137 308 DLDDGD 313 (497)
T ss_pred CCchhh
Confidence 775443
No 8
>TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit. This orthology group is more narrowly defined here than in Proc Natl Acad Aci USA 94, 11819-11826 (1997). In particular, a Rhodococcus homolog found in association with nitrile hydratase genes and described as an enantiomer-selective amidase active on several 2-aryl propionamides, is excluded here. It is likely, however, that the amidase subunit GatA is not exclusively a part of the Glu-tRNA(Gln) amidotransferase heterotrimer and restricted to that function in all species.
Probab=100.00 E-value=1.5e-72 Score=603.80 Aligned_cols=285 Identities=30% Similarity=0.457 Sum_probs=262.0
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhCCCCeeEEecCcHHHHHHHHHHHHHHHccCCCCCCCCCCccEEEecCCCCCCCc
Q psy7560 192 IAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSKESTACKGLS 271 (507)
Q Consensus 192 l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~~~~~~pL~GiP~~vKD~~~v~G~~ 271 (507)
|+++|++|++|++||+++|++||+++|+.+||++++++|+|+++|+++|++++ +|||||||+|||+|+|+|++
T Consensus 1 l~~~~~~g~~s~~ev~~~~l~ri~~~~~~~na~~~~~~~~al~~A~~~d~~~~-------gpL~GvPv~vKD~~~v~G~~ 73 (460)
T TIGR00132 1 LRQLLKKKEISIKEVLEASLDRIEANKDKINAFLEVTVEKALKQAKKLDKAIL-------TPLAGIPIAVKDNISTKGIV 73 (460)
T ss_pred ChhHHhcCCCCHHHHHHHHHHHHHHhcccCCeEEEcCHHHHHHHHHHHHHhcc-------CCcCCcEEEEecccccCCcc
Confidence 56889999999999999999999999999999999999999999999998643 79999999999999999999
Q ss_pred CCcCcccccCCCCCCcHHHHHHHHHcCCeEEEccccCCcC-CCCCCCCCCCCCCCCCCCCCCCCCCCchhHHhhhcCCCc
Q psy7560 272 NTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSV 350 (507)
Q Consensus 272 tt~Gs~~~~~~~~~~da~~V~~L~~aGAii~GkTn~~e~~-~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVaag~~~ 350 (507)
||+||..++++++.+||++|++|+++|||++||||||||+ +.++.|++||+|+||||++|+|||||||||++||+|+++
T Consensus 74 tt~Gs~~~~~~~~~~dA~vV~~L~~aGAii~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~ 153 (460)
T TIGR00132 74 TTCASKILENYIPPYDATVIERLKQAGALIIGKTNMDEFAMGSSTETSAFGPTKNPWNLDRVPGGSSGGSAAAVAADLAP 153 (460)
T ss_pred cCcCChhhccCCCCCchHHHHHHHHCCCEEEEEechhHHhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred eeeeccCCCcccccccccCcceeecCCCCccCCCCCCCCCCCCCCcceeccccCChhhHHHHHHHhcCCCCCCCCCCCcc
Q psy7560 351 LGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPAYNFDKS 430 (507)
Q Consensus 351 ~alGtDtgGSiR~PAa~~Gv~G~kPt~G~v~~~G~~p~~~~~~~~~~~~Gp~ar~v~D~~~~~~~l~~~~~~d~~~~~~~ 430 (507)
+|+|||||||||+||+||||||||||+|++|+.|++|.++ ++|++|||||||+|+++++++|.+.++.|+.....+
T Consensus 154 ~alGtDtgGSIRiPAa~cGv~G~KPT~G~vs~~G~~~~~~----~~d~~Gp~arsv~D~a~~~~~l~g~~~~d~~~~~~~ 229 (460)
T TIGR00132 154 FSLGSDTGGSIRQPASFCGVVGFKPTYGRVSRYGLVAYAS----SLDQIGPFARTVEDIALLLDVISGHDKRDSTSAKVP 229 (460)
T ss_pred eEeecCCCCcchhhhHhcCceeECCCCCcCCCCCCcCccc----CCCcccCeeCCHHHHHHHHHHHcCCCCCCCcccCCC
Confidence 9999999999999999999999999999999999999887 899999999999999999999999988776543211
Q ss_pred ---------CCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHH
Q psy7560 431 ---------VDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIKQFRLGYDVWRY 493 (507)
Q Consensus 431 ---------~~~~~lrig~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~G~~v~~~~~~p~~~~~~~~~~~ 493 (507)
.+.+++|||+..+.+ ..++++++++++++++.|+++ |++|++ +++|.+......|..
T Consensus 230 ~~~~~~~~~~~~~~lrig~~~~~~----~~~~~~v~~a~~~a~~~L~~~-G~~v~~-~~~p~~~~~~~~~~~ 295 (460)
T TIGR00132 230 DPEFFEELKKDLKGLKVGVVKEFS----EEMDKEVQEKFENALEVLEEL-GAEIVE-VSFPHVKYALPIYYI 295 (460)
T ss_pred ccchhhhhhcccCCCEEEEECccc----ccCCHHHHHHHHHHHHHHHHC-CCEEEE-eCCCcHHHHHHHHHH
Confidence 135789999987532 237999999999999999996 999999 998877655554443
No 9
>PRK09201 amidase; Provisional
Probab=100.00 E-value=1.8e-72 Score=603.28 Aligned_cols=300 Identities=28% Similarity=0.378 Sum_probs=266.8
Q ss_pred ccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCeeEEecCcHHHHHHHHHHHHHHHccCCCCCCCCCCccEEEec
Q psy7560 184 IVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSKE 263 (507)
Q Consensus 184 ~~~~s~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~~~~~~pL~GiP~~vKD 263 (507)
+..+|+.+|+++|++|++|++||++++++||+++|+.+||++++++|+|+++|+++|+++++|+. .+|||||||+|||
T Consensus 4 ~~~~~~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~d~al~~A~~~d~~~~~g~~--~gpL~GvPi~vKD 81 (465)
T PRK09201 4 LSSLSAAEIAAAVRAGELSARAVAQATLARIARANPQLNAFTAVTAERALAEAARIDAARAAGEP--LGPLAGVPFAVKN 81 (465)
T ss_pred cccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCC--CCCcCCceEEEEe
Confidence 45679999999999999999999999999999999999999999999999999999999998876 5999999999999
Q ss_pred CCCCCCCcCCcCcccccCCCC-CCcHHHHHHHHHcCCeEEEccccCCcC-CCCCCCCCCCCCCCCCCCCCCCCCCCchhH
Q psy7560 264 STACKGLSNTLGLLARKGKKA-DADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGGEA 341 (507)
Q Consensus 264 ~~~v~G~~tt~Gs~~~~~~~~-~~da~~V~~L~~aGAii~GkTn~~e~~-~~~~~n~~~G~~~NP~~~~~~~GGSSgGsa 341 (507)
+|+++|++||+||..+.++++ .+||++|++|+++|||++||||||||+ +..+.|++||+|+||||++|+|||||||||
T Consensus 82 ~~~v~G~~tt~Gs~~~~~~~~~~~dA~vV~~Lr~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsA 161 (465)
T PRK09201 82 LFDVAGLTTLAGSKINRDRPPATRDATAVRRLEAAGAVLVGALNMDEYAYGFTTENSHYGATRNPHDLTRIAGGSSGGSA 161 (465)
T ss_pred ccccCCcccCcCChhhccCCCCCCChHHHHHHHHCCCEEEEecChHHHhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHH
Confidence 999999999999999999988 699999999999999999999999999 999999999999999999999999999999
Q ss_pred HhhhcCCCceeeeccCCCcccccccccCcceeecCCCCccCCCCCCCCCCCCCCcceeccccCChhhHHHHHHHhcCCCC
Q psy7560 342 CLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDK 421 (507)
Q Consensus 342 aaVaag~~~~alGtDtgGSiR~PAa~~Gv~G~kPt~G~v~~~G~~p~~~~~~~~~~~~Gp~ar~v~D~~~~~~~l~~~~~ 421 (507)
++||+|++++|+|||||||||+||+|||+||||||+|++|+.|++|+++ ++|++|||||+|+|+++++++|.++++
T Consensus 162 aaVAaG~~~~alGtDtgGSIRiPAa~cGv~G~KPT~Grvs~~G~~~~~~----s~d~~Gp~arsv~D~a~~l~~l~g~d~ 237 (465)
T PRK09201 162 AAVAAGLVPFTLGSDTNGSIRVPASLCGIFGLKPTYGRLSRAGSFPFVA----SLDHIGPFARSVADLALVYDVLQGPDP 237 (465)
T ss_pred HHHHcCCCceEEecCCCCcchhhhHHhCceeeeCCCCccCCCCCCCccc----ccCcccCccCCHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999999999999887 899999999999999999999999988
Q ss_pred CCCCCCCcc---------CCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHH
Q psy7560 422 LPAYNFDKS---------VDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIKQFRLGYDVWR 492 (507)
Q Consensus 422 ~d~~~~~~~---------~~~~~lrig~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~G~~v~~~~~~p~~~~~~~~~~ 492 (507)
.|+...+.+ .+.+++|||+..+. +...++++++++++++++.|+.. + + +++|........++
T Consensus 238 ~d~~~~~~~~~~~~~~~~~~~~~lrig~~~~~---~~~~~~~~v~~a~~~a~~~L~~~---~--~-v~~~~~~~~~~~~~ 308 (465)
T PRK09201 238 QDPFQADRPAEPTAPLLDRGAEGLRIAVLGGY---FAQWADPEARAAVDRVAKALGAT---R--E-VELPEAARARAAAF 308 (465)
T ss_pred CCcccccCCCcchhhhhccCCCCCEEEEECcc---ccCCCCHHHHHHHHHHHHHccCc---e--e-ecCCchhHHHHHHH
Confidence 776644321 12478999999642 23468999999999999998552 2 3 44555444444343
Q ss_pred HHHhhc
Q psy7560 493 YWVSKE 498 (507)
Q Consensus 493 ~~~~~d 498 (507)
.++..|
T Consensus 309 ~~~~~e 314 (465)
T PRK09201 309 IITASE 314 (465)
T ss_pred HHHHHH
Confidence 333333
No 10
>PRK06102 hypothetical protein; Provisional
Probab=100.00 E-value=2.9e-72 Score=599.67 Aligned_cols=289 Identities=24% Similarity=0.286 Sum_probs=265.4
Q ss_pred cccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCeeEEecCcHHHHHHHHHHHHHHHccCCCCCCCCCCccEEEecC
Q psy7560 185 VLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSKES 264 (507)
Q Consensus 185 ~~~s~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~~~~~~pL~GiP~~vKD~ 264 (507)
..+|+.+|+++|++|++|++||++++++||+++|+ +||++++++++|+++|+++|+++++++. .+|||||||+|||+
T Consensus 4 ~~~~~~~l~~~l~~g~~s~~ev~~~~l~ri~~~~~-~na~~~~~~~~al~~A~~~d~~~~~g~~--~gpL~GvPi~vKD~ 80 (452)
T PRK06102 4 GAKSAAQLAVLIQSGALDPVQVAEQALDAIASYAD-QAVFISLTEERAMREAEASSARWRAGRS--LGLLDGIPIAWKDL 80 (452)
T ss_pred cccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCC-CCEEEEeCHHHHHHHHHHHHHHHHCCCC--CCCcCCCeEEEEec
Confidence 35789999999999999999999999999999986 8999999999999999999999988876 59999999999999
Q ss_pred CCCCCCcCCcCcccccCCCC-CCcHHHHHHHHHcCCeEEEccccCCcC-CCCCCCCCCCCCCCCCCC--CCCCCCCCchh
Q psy7560 265 TACKGLSNTLGLLARKGKKA-DADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNL--CRTTGASSGGE 340 (507)
Q Consensus 265 ~~v~G~~tt~Gs~~~~~~~~-~~da~~V~~L~~aGAii~GkTn~~e~~-~~~~~n~~~G~~~NP~~~--~~~~GGSSgGs 340 (507)
|+|+|++||+||..+.++++ .+||++|+||+++|||++||||||||+ +..+.|++||+|+||||+ +|+||||||||
T Consensus 81 ~~v~G~~tt~Gs~~~~~~~~~~~dA~vV~rL~~aGAii~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~~~~~GGSSgGs 160 (452)
T PRK06102 81 FDVAGSVTTAGSVVLANAAPASRDAAVVALLARAGMVSIGRTNMSEFAFSGLGLNPHYGTPVNPRSTDVPRIPGGSSSGS 160 (452)
T ss_pred cccCCCccCcCChhhccCCCCCCCHHHHHHHHHCCCEEEEeechHhHhcCCCCCCCCCCCCCCCCCCCCCcCCCCCcHHH
Confidence 99999999999999999876 699999999999999999999999999 999999999999999996 79999999999
Q ss_pred HHhhhcCCCceeeeccCCCcccccccccCcceeecCCCCccCCCCCCCCCCCCCCcceeccccCChhhHHHHHHHhcCCC
Q psy7560 341 ACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPD 420 (507)
Q Consensus 341 aaaVaag~~~~alGtDtgGSiR~PAa~~Gv~G~kPt~G~v~~~G~~p~~~~~~~~~~~~Gp~ar~v~D~~~~~~~l~~~~ 420 (507)
|++||+|++++|+|||||||||+||+||||||||||+|++|++|++|+++ ++|++|||||||+|+++++++|.+.+
T Consensus 161 AaaVAaG~~~~alGtDtgGSiRiPAa~cGv~G~KPT~G~v~~~G~~~~~~----s~d~~Gp~arsv~D~a~~~~~l~g~~ 236 (452)
T PRK06102 161 AVAVAAGLVPVAMGTDTGGSVRIPAAFNGLVGYKATRGRYSMDGVFPLAK----SLDSLGPLCRSVRDAVWIDAAMRGLT 236 (452)
T ss_pred HHHHHcCCCceEEecCCCCcchhhhHHhCceeEecCCCcccCCCCccccc----ccCcccCccCCHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999887 99999999999999999999999986
Q ss_pred CCCCCCCCccCCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCCchHHHHH
Q psy7560 421 KLPAYNFDKSVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIKQFRLGYD 489 (507)
Q Consensus 421 ~~d~~~~~~~~~~~~lrig~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~G~~v~~~~~~p~~~~~~~ 489 (507)
+.+.. +.+++++||++..+. +...++|+++++++++++.|+++ |++|++ +++|.+.+...
T Consensus 237 ~~~~~----~~~~~~~ri~~~~~~---~~~~~~~~v~~~~~~a~~~L~~~-G~~v~~-~~~~~~~~~~~ 296 (452)
T PRK06102 237 APDVV----RRPLAGLRLVVPETV---VFDDAEPGVRAAFEAAVERLQAA-GALVER-QAFPAFQEILD 296 (452)
T ss_pred Ccccc----ccCCCCCEEEEecch---hcccCCHHHHHHHHHHHHHHHhC-CCEEEe-cCCccHHHHHH
Confidence 53322 123567899997642 23568999999999999999996 999999 99887665544
No 11
>TIGR02715 amido_AtzE amidohydrolase, AtzE family. Members of this protein family are aminohydrolases related to, but distinct from, glutamyl-tRNA(Gln) amidotransferase subunit A. The best characterized member is the biuret hydrolase of Pseudomonas sp. ADP, which hydrolyzes ammonia from the three-nitrogen compound biuret to yield allophanate. Allophanate is also an intermediate in urea degradation by the urea carboxylase/allophanate hydrolase pathway, an alternative to urease.
Probab=100.00 E-value=1.9e-72 Score=601.31 Aligned_cols=296 Identities=28% Similarity=0.392 Sum_probs=263.2
Q ss_pred CHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCeeEEecCcHHHHHHHHHHHHHHHccCCCCCCCCCCccEEEecCCCC
Q psy7560 188 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSKESTAC 267 (507)
Q Consensus 188 s~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~~~~~~pL~GiP~~vKD~~~v 267 (507)
|+.+|+++|++|++|++||++++++||++.|+.+||++++++++|+++|+++|+++++|.. .+|||||||+|||||+|
T Consensus 1 ~~~~l~~~l~~g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~--~gpL~GvPv~vKD~~~v 78 (452)
T TIGR02715 1 SIVEIAGAIRSGRVSARAVAEATLARINQADGGLNAFTAVTAERALADAARIDADLAAGSP--LGPLAGVPFAVKNLFDV 78 (452)
T ss_pred CHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHHHHHHHHHHHHHHHHCCCC--CCCcCCCeEEEEecccc
Confidence 6889999999999999999999999999999999999999999999999999999988876 59999999999999999
Q ss_pred CCCcCCcCcccccCCCC-CCcHHHHHHHHHcCCeEEEccccCCcC-CCCCCCCCCCCCCCCCCCCCCCCCCCchhHHhhh
Q psy7560 268 KGLSNTLGLLARKGKKA-DADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGGEACLVS 345 (507)
Q Consensus 268 ~G~~tt~Gs~~~~~~~~-~~da~~V~~L~~aGAii~GkTn~~e~~-~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVa 345 (507)
+|++||+||..+.++++ .+||++|+||+++|||++||||||||+ +..+.|++||+|+||||++|+|||||||||++||
T Consensus 79 ~G~~tt~Gs~~~~~~~p~~~dA~vV~rL~~AGAii~GkTn~~Ef~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVA 158 (452)
T TIGR02715 79 AGLTTLAGAKINRDLAPAKRDATLVQRLSAAGAVLVGALNMDEFAYGFTTENAHYGPTRNPHDLTRIAGGSSGGSAAAVA 158 (452)
T ss_pred CCceeCcCChhhccCCCCCCCHHHHHHHHHCCCEEEEeccCHhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHH
Confidence 99999999999999987 699999999999999999999999999 9999999999999999999999999999999999
Q ss_pred cCCCceeeeccCCCcccccccccCcceeecCCCCccCCCCCCCCCCCCCCcceeccccCChhhHHHHHHHhcCCCCCCCC
Q psy7560 346 ACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPAY 425 (507)
Q Consensus 346 ag~~~~alGtDtgGSiR~PAa~~Gv~G~kPt~G~v~~~G~~p~~~~~~~~~~~~Gp~ar~v~D~~~~~~~l~~~~~~d~~ 425 (507)
+|++++|+|||||||||+||+||||||||||+|+||+.|++|+++ ++|++|||||||+|+++++++|.++++.|+.
T Consensus 159 ag~~~~alGtDtgGSiRiPAa~cGv~GlKPT~Grvs~~G~~~~~~----s~d~~Gp~arsv~D~a~~l~~l~g~~~~d~~ 234 (452)
T TIGR02715 159 AGLVPFSLGSDTNGSIRVPASLCGVFGLKPTYGRLSRQGVFPFVA----SLDHVGPFARSVEDLALAYDVMQGPDPQDPF 234 (452)
T ss_pred CCCCceEEeeCCCCcchhhHHHhCceeeeCCCCCccCCCCCCCcc----ccCcccCeeCCHHHHHHHHHHhcCCCCCCcc
Confidence 999999999999999999999999999999999999999999887 8999999999999999999999999887765
Q ss_pred CCCcc---------CCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHh
Q psy7560 426 NFDKS---------VDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIKQFRLGYDVWRYWVS 496 (507)
Q Consensus 426 ~~~~~---------~~~~~lrig~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~G~~v~~~~~~p~~~~~~~~~~~~~~ 496 (507)
..+.+ .+.+++|||+..+. +...++++++++++++++.|+.. ++ +++|........++.++.
T Consensus 235 ~~~~p~~~~~~~~~~~~~~lrig~~~~~---~~~~~~~~v~~a~~~a~~~L~~~---~~---v~~~~~~~~~~~~~~~~~ 305 (452)
T TIGR02715 235 CTDRPAEPTVPLLPAGISGLRIAVLGGW---FQQNADPEALAAVGRVAKALGAT---TI---VELPDAERARAAAFVITA 305 (452)
T ss_pred cccCCCcchhhhhhcCCCCCEEEEECcc---ccCCCCHHHHHHHHHHHHhcCCe---ee---ecCCchHHHHHHHHHHHH
Confidence 43221 13578999998642 23468999999999999998552 23 344544444333433443
Q ss_pred hc
Q psy7560 497 KE 498 (507)
Q Consensus 497 ~d 498 (507)
.|
T Consensus 306 ~e 307 (452)
T TIGR02715 306 SE 307 (452)
T ss_pred HH
Confidence 33
No 12
>PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed
Probab=100.00 E-value=1.6e-72 Score=603.30 Aligned_cols=285 Identities=32% Similarity=0.480 Sum_probs=262.1
Q ss_pred HHcCCCCHHHHHHHHHHHHHHhCCCCeeEEecCcHHHHHHHHHHHHHHHccCCCCCCCCCCccEEEecCCCCCCCcCCcC
Q psy7560 196 IRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSKESTACKGLSNTLG 275 (507)
Q Consensus 196 l~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~~~~~~pL~GiP~~vKD~~~v~G~~tt~G 275 (507)
|++|++|++||++++++||++.|+.+||++++++++|+++|+++|++++++. . +|||||||+|||+|+|+|++||+|
T Consensus 1 i~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~-~--gpL~GvPv~vKD~~~v~G~~tt~G 77 (459)
T PRK00012 1 LKNKEISAVELTQAYLDRIEEVDPKLNAFITVTEEEALAQAKAADAKLAAGE-A--GPLAGIPIAIKDNICTKGIRTTCA 77 (459)
T ss_pred CCCCcCCHHHHHHHHHHHHHHhcccCCeEEEeCHHHHHHHHHHHHHHHhcCC-C--CccCCeEEEEecccccCCCccCcc
Confidence 4789999999999999999999999999999999999999999999988766 3 899999999999999999999999
Q ss_pred cccccCCCCCCcHHHHHHHHHcCCeEEEccccCCcC-CCCCCCCCCCCCCCCCCCCCCCCCCCchhHHhhhcCCCceeee
Q psy7560 276 LLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLG 354 (507)
Q Consensus 276 s~~~~~~~~~~da~~V~~L~~aGAii~GkTn~~e~~-~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVaag~~~~alG 354 (507)
|..+.++++.+|+++|+|||++|||++||||||||+ +..+.|++||+|+||||++|+|||||||||++||+|++++|+|
T Consensus 78 s~~~~~~~~~~da~vV~~Lr~aGAiilGkTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~alG 157 (459)
T PRK00012 78 SKILENYVPPYDATVVEKLKAAGAVILGKTNMDEFAMGSSTENSAFGPTKNPWDLERVPGGSSGGSAAAVAAGLAPAALG 157 (459)
T ss_pred CHhhccCCCCcchHHHHHHHHCCCEEEeeccchhhhcCCCCCCCCCCCcCCCCCCCCCCCCCcHHHHHHHHcCCCceEEe
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred ccCCCcccccccccCcceeecCCCCccCCCCCCCCCCCCCCcceeccccCChhhHHHHHHHhcCCCCCCCCCCCcc----
Q psy7560 355 TDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPAYNFDKS---- 430 (507)
Q Consensus 355 tDtgGSiR~PAa~~Gv~G~kPt~G~v~~~G~~p~~~~~~~~~~~~Gp~ar~v~D~~~~~~~l~~~~~~d~~~~~~~---- 430 (507)
||||||||+||+|||+||||||+|++|+.|++|.++ ++|++|||||||+|+++++++|.++++.|+...+.+
T Consensus 158 tDtgGSiRiPAa~cGvvG~KPT~G~vp~~G~~~~~~----~~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~~~~~~~~~~ 233 (459)
T PRK00012 158 SDTGGSIRQPAAFCGVVGLKPTYGRVSRYGLIAFAS----SLDQIGPFARTVEDAALLLNAIAGHDPKDSTSADVPVPDY 233 (459)
T ss_pred eCCCCccchhHHHcCceeecCCCCcccCCCCcCccc----CCCcccCccCCHHHHHHHHHHHhCCCCCCcccccCCCCch
Confidence 999999999999999999999999999999999887 899999999999999999999999988776543211
Q ss_pred -----CCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHH
Q psy7560 431 -----VDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIKQFRLGYDVWR 492 (507)
Q Consensus 431 -----~~~~~lrig~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~G~~v~~~~~~p~~~~~~~~~~ 492 (507)
.+.+++|||++.+. +...++++++++++++++.|+++ |++|++ +++|.+......+.
T Consensus 234 ~~~~~~~~~~lrig~~~~~---~~~~~~~~v~~a~~~a~~~L~~~-G~~v~~-~~~~~~~~~~~~~~ 295 (459)
T PRK00012 234 TAALGKDIKGLKIGVPKEY---FGEGLDPEVKEAVEAAIKKLEDL-GAEIVE-VSLPHTKYALPAYY 295 (459)
T ss_pred hhhhcccccccEEEEEccc---ccccCCHHHHHHHHHHHHHHHHC-CCEEEE-eCCCchHHHHHHHH
Confidence 13578999998752 23568999999999999999996 999999 99887665554443
No 13
>PRK07056 amidase; Provisional
Probab=100.00 E-value=2.7e-72 Score=600.22 Aligned_cols=289 Identities=24% Similarity=0.290 Sum_probs=267.6
Q ss_pred cCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-CCeeEEecCcHHHHHHHHHHHHHHHccCCCCCCCCCCccEEEecCC
Q psy7560 187 ESATQIAKKIRNKNITSVEVVQAFIERIEQVNP-YLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSKEST 265 (507)
Q Consensus 187 ~s~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~-~~na~~~~~~~~al~~A~~~d~~~~~~~~~~~~pL~GiP~~vKD~~ 265 (507)
.|+.+|++++++|++|++||+++|++||+++|+ .+||++++++++|+++|+++|++++++.. .+|||||||+|||+|
T Consensus 6 ~~~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~--~gpL~GvPi~vKD~~ 83 (454)
T PRK07056 6 PTLAALAADLAAGRTTSRALVEAALARIADPAGEGARVFTHVDADAARAAADAADALRAAGAA--PSPLAGIPVSVKDLF 83 (454)
T ss_pred cCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCccEEEEeCHHHHHHHHHHHHHHHhCCCC--CCCcCCCeEEEEeee
Confidence 389999999999999999999999999999997 49999999999999999999998888876 599999999999999
Q ss_pred CCCCCcCCcCcccccCCCC-CCcHHHHHHHHHcCCeEEEccccCCcC-CCCCCCCCCCCCCCCC----CCCCCCCCCCch
Q psy7560 266 ACKGLSNTLGLLARKGKKA-DADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPY----NLCRTTGASSGG 339 (507)
Q Consensus 266 ~v~G~~tt~Gs~~~~~~~~-~~da~~V~~L~~aGAii~GkTn~~e~~-~~~~~n~~~G~~~NP~----~~~~~~GGSSgG 339 (507)
+|+|++||+||..+.++++ .+||++|+||+++|||++||||||||+ +.++.|++||.|+||| |++|+|||||||
T Consensus 84 ~v~G~~tt~Gs~~~~~~~~~~~dA~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~~~~~GGSSgG 163 (454)
T PRK07056 84 DVAGQVTRAGSRVLADAPPAAADAPAVARLRRAGAVLIGRTNMTEFAFSGLGLNPHYGTPRNPWRRDVGDGRIPGGSSSG 163 (454)
T ss_pred ccCCCccCCCChhhccCCCCCCCHHHHHHHHHCCCEEEEeccchhHhhCCCCCCCCCCCCCCCCCCCCCCCcCCCCcchH
Confidence 9999999999999999988 689999999999999999999999999 9999999999999999 899999999999
Q ss_pred hHHhhhcCCCceeeeccCCCcccccccccCcceeecCCCCccCCCCCCCCCCCCCCcceeccccCChhhHHHHHHHhcCC
Q psy7560 340 EACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILP 419 (507)
Q Consensus 340 saaaVaag~~~~alGtDtgGSiR~PAa~~Gv~G~kPt~G~v~~~G~~p~~~~~~~~~~~~Gp~ar~v~D~~~~~~~l~~~ 419 (507)
||++||+|++++|+|||||||||+||+|||+||||||+|++|+.|++|+++ ++|++|||||+|+|+++++++|.++
T Consensus 164 sAaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~~~~~----~~d~~Gp~arsv~D~a~~~~vl~g~ 239 (454)
T PRK07056 164 AAVSVADGMAAAALGTDTGGSIRIPAALCGLTGFKPTARRVPLQGAVPLST----TLDSIGPLARSVACCALVDAVLAGE 239 (454)
T ss_pred HHHHHHcCCCceEEeeCCCCccccchHhhCceeeccCCCccCCCCcccCcc----ccCcccCccCCHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999887 9999999999999999999999998
Q ss_pred CCCCCCCCCccCCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHH
Q psy7560 420 DKLPAYNFDKSVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIKQFRLGYDV 490 (507)
Q Consensus 420 ~~~d~~~~~~~~~~~~lrig~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~G~~v~~~~~~p~~~~~~~~ 490 (507)
++.|+... +.+++|||+..+. +...++++++++++++++.|+++ |++|++ +++|.+.....+
T Consensus 240 d~~d~~~~----~~~~lrig~~~~~---~~~~~~~~v~~~~~~a~~~L~~~-G~~v~~-~~~~~~~~~~~~ 301 (454)
T PRK07056 240 EPVVPAAR----PLEGLRLAVPTTV---VLDGLDATVAAAFERALKRLSAA-GAIIEE-IAFPELAELAEI 301 (454)
T ss_pred CCCCcccc----cccCcEEEEcchh---hccCCCHHHHHHHHHHHHHHHHC-CCEEEE-ecCcchHHHHHH
Confidence 87665432 3578999998652 23468999999999999999996 999999 998876554444
No 14
>PRK07488 indole acetimide hydrolase; Validated
Probab=100.00 E-value=2.8e-72 Score=602.97 Aligned_cols=286 Identities=30% Similarity=0.394 Sum_probs=266.0
Q ss_pred cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCeeEEecCcHHHHHHHHHHHHHHHccCCCCCCCCCCccEEEe
Q psy7560 183 KIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSK 262 (507)
Q Consensus 183 ~~~~~s~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~~~~~~pL~GiP~~vK 262 (507)
++..+|+.||+++|++|++|++||+++|++||++.+ .+||++++++++|+++|+++|++++.|.. .+ ||||||+||
T Consensus 7 ~~~~~~~~~l~~~l~~g~~s~~ev~~~~l~ri~~~~-~lna~~~~~~~~al~~A~~~d~~~~~g~~--~g-L~GvPi~vK 82 (472)
T PRK07488 7 DVASLSLTEAAAALRSGRLSCLELVEALLARAAALA-PLNAFTTVDAEGALAAARRIDAQRAAGAA--LL-LAGVPIVIK 82 (472)
T ss_pred hhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-cCCEEEEcCHHHHHHHHHHHHHHHhcCCC--CC-cCceEEEEE
Confidence 466789999999999999999999999999999986 69999999999999999999999887766 36 999999999
Q ss_pred cCCCCCCCcCCcCcccccCCCCCCcHHHHHHHHHcCCeEEEccccCCcC-CCCCCCCCCCCCCCCCCCCCCCCCCCchhH
Q psy7560 263 ESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGGEA 341 (507)
Q Consensus 263 D~~~v~G~~tt~Gs~~~~~~~~~~da~~V~~L~~aGAii~GkTn~~e~~-~~~~~n~~~G~~~NP~~~~~~~GGSSgGsa 341 (507)
|+|+|+|++||+||..+.++++.+||++|+|||++|||++||||||||+ +.++.|++||+|+||||++++|||||||||
T Consensus 83 D~~~v~G~~tt~Gs~~~~~~~~~~dA~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsA 162 (472)
T PRK07488 83 DNINTAGMPTTAGTPALLGFVPATDAPVVQRLLDAGAVPLGKANMHELAFGITSNNGAFGAVRNPYDPARIAGGSSGGTA 162 (472)
T ss_pred cccccCCCccCcCChhhccCCCCCCHHHHHHHHHCCCeeeeccChhHHhcCCCCCCCCCCCCCCCCCCCCCCCCCchHHH
Confidence 9999999999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HhhhcCCCceeeeccCCCcccccccccCcceeecCCCCccCCCCCCCCCCCCCCcceeccccCChhhHHHHHHHhcCCCC
Q psy7560 342 CLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDK 421 (507)
Q Consensus 342 aaVaag~~~~alGtDtgGSiR~PAa~~Gv~G~kPt~G~v~~~G~~p~~~~~~~~~~~~Gp~ar~v~D~~~~~~~l~~~~~ 421 (507)
++||+|++++|+|||||||||+||+||||||||||+|++|++|++|+++ ++|++|||||||+|+++++++|.|.++
T Consensus 163 aaVAaG~~~~alGtDtgGSIRiPAa~cGvvG~KPT~G~vs~~G~~p~~~----~~d~~Gp~arsv~D~a~~~~vl~g~d~ 238 (472)
T PRK07488 163 AAVAARLAPAGLGTDTGGSVRIPAALCGVVGLRPTVGRYSGDGVVPISH----TRDTVGPIARSVADLALLDAVITGDAA 238 (472)
T ss_pred HHHHcCCCceeeecCCCCCeecChHhhCceeeccCCCCCCCCCcccccc----cCCcccCccCCHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999999999999887 999999999999999999999999876
Q ss_pred CCCCCCCccCCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCCchHH
Q psy7560 422 LPAYNFDKSVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIKQFRL 486 (507)
Q Consensus 422 ~d~~~~~~~~~~~~lrig~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~G~~v~~~~~~p~~~~ 486 (507)
.++ +.+++++|||++.+++ ...++++++++++++++.|+++ |++|++ +++|.+.+
T Consensus 239 ~~~-----~~~~~~lrig~~~~~~---~~~~~~~v~~a~~~a~~~L~~~-G~~v~~-~~~~~~~~ 293 (472)
T PRK07488 239 LPA-----PVALAGLRLGVPAAPF---WDGLDPDVAAVAEAALAKLAAA-GVTFVE-LDLPGLHE 293 (472)
T ss_pred CCC-----CcCcCCCEEEEEcchh---ccCCCHHHHHHHHHHHHHHHHC-CCEEEe-eCCcCHHH
Confidence 321 2246889999997533 4568999999999999999996 999999 99876554
No 15
>PRK07869 amidase; Provisional
Probab=100.00 E-value=9.2e-72 Score=598.64 Aligned_cols=287 Identities=26% Similarity=0.316 Sum_probs=258.4
Q ss_pred ccccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCeeEEecCcHHHHHHHHHHHHHHHccCCCCCCCCCCccEEE
Q psy7560 182 NKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTS 261 (507)
Q Consensus 182 ~~~~~~s~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~~~~~~pL~GiP~~v 261 (507)
+++..+++.+|+++|++|++|++||++++++||+++|+.+||++++++|+|+++|+++|. . .+|||||||+|
T Consensus 10 ~~~~~~~~~~l~~~~~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~e~a~~~A~~~d~------~--~gpL~GvPi~v 81 (468)
T PRK07869 10 DALGDLDAVGLAEAIRAGRVSAAEVVEAAIARAEAVNPALNALAYAAFDRARDRAARPGS------Q--GGFFSGVPTFI 81 (468)
T ss_pred hhhhcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCcCEEEEcCHHHHHHHHHhcCC------C--CCCcCCCeEEE
Confidence 346678999999999999999999999999999999999999999999999999998872 2 48999999999
Q ss_pred ecCCCCCCCcCCcCcccccCCCCCCcHHHHHHHHHcCCeEEEccccCCcC-CCCCCCCCCCCCCCCCCCCCCCCCCCchh
Q psy7560 262 KESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGGE 340 (507)
Q Consensus 262 KD~~~v~G~~tt~Gs~~~~~~~~~~da~~V~~L~~aGAii~GkTn~~e~~-~~~~~n~~~G~~~NP~~~~~~~GGSSgGs 340 (507)
||||+++|++||+||..+.++++.+||++|+||+++|||++||||||||+ +.++.|++||.|+||||++|+||||||||
T Consensus 82 KD~~~v~G~~tt~Gs~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~d~~~~pGGSSgGs 161 (468)
T PRK07869 82 KDNVDVAGLPTMHGSDAWTPRPAKADSDFARQFLATGLISLGKTQLPEFGFSASTEHPRLGPVRNPWNTDYSAGASSGGS 161 (468)
T ss_pred ecCcccCCcccCcccHhhcCCCCCCcHHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCcCCCCCCCCCCCCCchHH
Confidence 99999999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHhhhcCCCceeeeccCCCcccccccccCcceeecCCCCccCCCCCCCCCCCCCCcceeccccCChhhHHHHHHHhcCCC
Q psy7560 341 ACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPD 420 (507)
Q Consensus 341 aaaVaag~~~~alGtDtgGSiR~PAa~~Gv~G~kPt~G~v~~~G~~p~~~~~~~~~~~~Gp~ar~v~D~~~~~~~l~~~~ 420 (507)
|++||+|++++|+|||||||||+||+||||||||||+|++|..|+.|..+ .++|++|||||||+|+++++++|.+.+
T Consensus 162 AaAVAaG~~~~alGTDtgGSiRiPAa~cGvvG~KPT~G~vs~~g~~~~~~---~~~d~~Gp~arsv~D~a~l~~v~~g~~ 238 (468)
T PRK07869 162 AALVAAGVVPIAHANDGGGSIRIPAACCGLVGLKPSRGRLPLDPELRRLP---VNIVANGVLTRTVRDTAAFYREAERYY 238 (468)
T ss_pred HHHHHcCCCceeeecCCCCccccchhhcCeeeecCCCCcccCCCCcccCc---cccceecCeeCcHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999876432 257999999999999999999999987
Q ss_pred CCCCCCCC-c--cCCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCCc
Q psy7560 421 KLPAYNFD-K--SVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIKQ 483 (507)
Q Consensus 421 ~~d~~~~~-~--~~~~~~lrig~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~G~~v~~~~~~p~ 483 (507)
+.+..... . ..+.+++|||++.++. ....++|+++++++++++.|+++ |++|++ +++|.
T Consensus 239 ~~~~~~~~~~~~~~~~~~lrigv~~~~~--~~~~~~p~v~~a~~~a~~~L~~~-G~~v~~-~~~~~ 300 (468)
T PRK07869 239 RNPKLPPIGDVTGPGKQRLRIAVVTDSV--TGREADPEVREAVLATARLLEEL-GHRVEP-VDLPV 300 (468)
T ss_pred ccCCCCchhhhcccCCCCCEEEEECCcc--CCCCCCHHHHHHHHHHHHHHHHC-CCEEEE-eCCCc
Confidence 63321110 0 1135789999997532 11568999999999999999996 999999 88775
No 16
>PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence. They are widespread, being found in both prokaryotes and eukaryotes. AS enzymes catalyse the hydrolysis of amide bonds (CO-NH2), although the family has diverged widely with regard to substrate specificity and function. Nonetheless, these enzymes maintain a core alpha/beta/alpha structure, where the topologies of the N- and C-terminal halves are similar. AS enzymes characteristically have a highly conserved C-terminal region rich in serine and glycine residues, but devoid of aspartic acid and histidine residues, therefore they differ from classical serine hydrolases. These enzymes posses a unique, highly conserved Ser-Ser-Lys catalytic triad used for amide hydrolysis, although the catalytic mechanism for acyl-enzyme intermediate formation can differ between enzymes []. Examples of AS enzymes include: Peptide amidase (Pam) [], which catalyses the hydrolysis of the C-terminal amide bond of peptides. Fatty acid amide hydrolases [], which hydrolyse fatty acid amid substrates (e.g. cannabinoid anandamide and sleep-inducing oleamide), thereby controlling the level and duration of signalling induced by this diverse class of lipid transmitters. Malonamidase E2 [], which catalyses the hydrolysis of malonamate into malonate and ammonia, and which is involved in the transport of fixed nitrogen from bacteroids to plant cells in symbiotic nitrogen metabolism. Subunit A of Glu-tRNA(Gln) amidotransferase [],a heterotrimeric enzyme that catalyses the formation of Gln-tRNA(Gln) by the transamidation of misacylated Glu-tRNA(Gln) via amidolysis of glutamine. ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 1OCL_B 1OBK_A 1OBL_B 1OBJ_A 1OCM_B 1OCH_A 1OCK_B 1OBI_A 1O9Q_A 1O9N_B ....
Probab=100.00 E-value=3.8e-72 Score=592.66 Aligned_cols=288 Identities=33% Similarity=0.514 Sum_probs=246.6
Q ss_pred HHHHHHHHHHHHhCCCCeeEEecCcHHHHHHHHHHHHHHHccCCCCCCCCCCccEEEecCCCCCCCcCCcCcccccCCCC
Q psy7560 205 EVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKA 284 (507)
Q Consensus 205 ev~~~~l~ri~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~~~~~~pL~GiP~~vKD~~~v~G~~tt~Gs~~~~~~~~ 284 (507)
||+++|++||+++|+.+||+++..+++|+++|+++|++++++.. .+|||||||+|||+|+|+|++||+||..+.+.++
T Consensus 1 e~~~~~~~ri~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~--~~pL~Gip~~vKD~~~~~g~~tt~G~~~~~~~~~ 78 (441)
T PF01425_consen 1 ELVEAYLARIEAYNPELNAFVEVDFDEALAQARELDARRARGKP--RGPLHGIPISVKDNIDVAGLPTTAGSPALADNPP 78 (441)
T ss_dssp HHHHHHHHHHHHHHHHH--EEEEEHHHHHHHHHHHHHHHHTTSS--SSTTTT-EEEEETTBSBTTSBB-TTSGGGTTBBB
T ss_pred CHHHHHHHHHHHhCcccCEEEEECcHHHHHHHHHHHHHHhhcCC--CCCCCCCceeccccccccccccccccccccCcCc
Confidence 79999999999999999999999999999999999999987776 5999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHcCCeEEEccccCCcC-CCCCCCCCCCCCCCCCCCCCCCCCCCchhHHhhhcCCCceeeeccCCCcccc
Q psy7560 285 DADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRI 363 (507)
Q Consensus 285 ~~da~~V~~L~~aGAii~GkTn~~e~~-~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVaag~~~~alGtDtgGSiR~ 363 (507)
++||++|++|+++|||++||||||||+ +.++.|+.||+|+||||+.++|||||||||++||+|++++|||||||||||+
T Consensus 79 ~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~Np~~~~~~~GGSS~Gsaaavaag~~~~a~GtDtgGSiR~ 158 (441)
T PF01425_consen 79 TEDAPVVQRLRAAGAIIIGKTNMPEFAMGPTTSNPLYGRTRNPWNPSRTPGGSSGGSAAAVAAGFVPLAIGTDTGGSIRI 158 (441)
T ss_dssp SSS-HHHHHHHHTT-EEEEEE--SGGGCSSSSTTTTTEE-EBTTBTTBE--SSSHHHHHHHHTTSSSEEEEEESSSTTHH
T ss_pred ccccchhhheecccccceeeecccceeccccccccccccccCcccccccccccccccccccceecccccccccccccccC
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcceeecCCCCccCCCCCCCCCCCCCCcceeccccCChhhHHHHHHHhcCCCCCCCCCCCc-----------cCC
Q psy7560 364 PALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPAYNFDK-----------SVD 432 (507)
Q Consensus 364 PAa~~Gv~G~kPt~G~v~~~G~~p~~~~~~~~~~~~Gp~ar~v~D~~~~~~~l~~~~~~d~~~~~~-----------~~~ 432 (507)
||+||||||||||+|+||.+|++|.+. ++|++|||||||+|+++++++|.++++.|+..... ...
T Consensus 159 PAa~~Gv~GlkPT~G~vs~~G~~~~~~----~~d~~GpmaRsv~Dl~~~l~vl~g~~~~d~~~~~~~~~~~~~~~~~~~~ 234 (441)
T PF01425_consen 159 PAAFCGVVGLKPTRGRVSRDGVFPLSP----SFDTVGPMARSVEDLALLLDVLAGPDPWDPDSLPVPPPPPDFDAPLPKS 234 (441)
T ss_dssp HHHHHTSEEEE-STTSS--TTB-CSST----TT-EEEEEESSHHHHHHHHHHHBSCBTTBTTSCSTT--SS-CSTTTTST
T ss_pred chhccccceeccccccccccccccccc----cccccccccCcHHHHHHHHHHhcCCCccCCCcccccccccccccccccc
Confidence 999999999999999999999999987 99999999999999999999999998866544321 124
Q ss_pred CCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHhhcCchh
Q psy7560 433 LAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIKQFRLGYDVWRYWVSKEKDDF 502 (507)
Q Consensus 433 ~~~lrig~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~G~~v~~~~~~p~~~~~~~~~~~~~~~d~~~~ 502 (507)
.+++|||++.+++ ....++++++++++++++.|+++ |++|++ +++|.+.+....+..++..|....
T Consensus 235 ~~~lrIGv~~~~~--~~~~~~~~v~~a~~~a~~~L~~~-G~~vv~-~~~p~~~~~~~~~~~~~~~e~~~~ 300 (441)
T PF01425_consen 235 LKGLRIGVPRDDG--QWVPVDPEVRRAFEEAAEALEAA-GAEVVE-VDLPDLDEAMDAYYRIFVSEGAAN 300 (441)
T ss_dssp TTT-EEEEEGGGG---SSTSSHHHHHHHHHHHHHHHHT-T-EEEE-E--TTGGHHHHHHHHHHHHHHHHH
T ss_pred ccCcccccccccc--ccccccHHHHHHHHHHHHhhccc-cccccc-ccCchHHHHHHHHhhhHHHHHHHH
Confidence 6899999998632 24689999999999999999996 999999 999998888887777776666544
No 17
>PRK12470 amidase; Provisional
Probab=100.00 E-value=1.2e-70 Score=588.42 Aligned_cols=288 Identities=26% Similarity=0.408 Sum_probs=260.8
Q ss_pred ccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCeeEEecCcHHHHHHHHHHHHHHHccCCCCCCCCCCccEEEec
Q psy7560 184 IVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSKE 263 (507)
Q Consensus 184 ~~~~s~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~~~~~~pL~GiP~~vKD 263 (507)
+..+|+.+|++++++|++|++|+++++++||++.|+.+|+++.+++++|+++|+++|+++++|.+ . ||+||||+|||
T Consensus 6 ~~~~s~~~l~~~~~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~a~~~A~~~d~~~~~g~~--~-pL~GvPi~vKD 82 (462)
T PRK12470 6 LAFAGAAAQARMLADGELTAPMLLEVYLQRIERLDSHLRAYRVVLFDRARAEAEAAQQRLDAGER--L-PLLGVPIAIKD 82 (462)
T ss_pred hhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCcCEEEEeCHHHHHHHHHHhHHHHhcCCC--C-CcCCCeEEEec
Confidence 45679999999999999999999999999999999999999999999999999999999888765 5 99999999999
Q ss_pred CCCCCCCcCCcCcccccCCCCCCcHHHHHHHHHcCCeEEEccccCCcC-CCCCCCCCCCCCCCCCCCCCCCCCCCchhHH
Q psy7560 264 STACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGGEAC 342 (507)
Q Consensus 264 ~~~v~G~~tt~Gs~~~~~~~~~~da~~V~~L~~aGAii~GkTn~~e~~-~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaa 342 (507)
+|+++|++||+||..+ ++++.+||++|+||+++|||++||||||||+ +.++.|++||.|+||||++|+|||||||||+
T Consensus 83 ~~~v~G~~tt~Gs~~~-~~~~~~dA~vV~rLr~aGaii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAa 161 (462)
T PRK12470 83 DVDVAGEVTTYGSAGH-GPAATSDAEVVRRLRAAGAVIIGKTNVPELMIMPFTESLAFGATRNPWDPNRTPGGSSGGSAA 161 (462)
T ss_pred CcccCCceeCCCCccc-CCCCCccHHHHHHHHHCCCeEEEEeChHhHhcCCCCCCCCCCCCCCCCCCCCCCCcchhHHHH
Confidence 9999999999999986 6888899999999999999999999999999 9999999999999999999999999999999
Q ss_pred hhhcCCCceeeeccCCCcccccccccCcceeecCCCCccCCCCCCCCCCCCCCcceeccccCChhhHHHHHHHhcCCCCC
Q psy7560 343 LVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKL 422 (507)
Q Consensus 343 aVaag~~~~alGtDtgGSiR~PAa~~Gv~G~kPt~G~v~~~G~~p~~~~~~~~~~~~Gp~ar~v~D~~~~~~~l~~~~~~ 422 (507)
+||+|++++|+|||||||||+||+||||||||||+|++|+.|+.|+++ ++|++|||||+|+|+++++++|.+.+..
T Consensus 162 AVAaG~~~~alGtDtgGSiRiPAa~cGvvG~KPT~G~vs~~g~~~~~~----~ld~~Gp~ar~v~D~a~~~~vl~~~~~~ 237 (462)
T PRK12470 162 AVAAGLAPVALGSDGGGSIRIPSTWCGLFGLKPQRDRISLEPHDGAWQ----GLSVNGPIARSVMDAALLLDATTTVPGP 237 (462)
T ss_pred HHHcCCCceEEecCCCCchhhchhhhCceeecCCCCCcCCCCCCCccc----CccccCCeeCCHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999999999999999999999999999887 8999999999999999999999987542
Q ss_pred CCCCCC--ccCCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCC
Q psy7560 423 PAYNFD--KSVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIK 482 (507)
Q Consensus 423 d~~~~~--~~~~~~~lrig~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~G~~v~~~~~~p 482 (507)
+. .+. .....+++|||++.+....+...++++++++++++++.|++. |++|++ ++++
T Consensus 238 ~~-~~~~~~~~~~~~lrig~~~~~~~~~~~~~~~~v~~a~~~a~~~L~~~-G~~v~~-~~~~ 296 (462)
T PRK12470 238 EG-EFVAAAAREPGRLRIALSTRVPTPLPVRCGKQELAAVHQAGALLRDL-GHDVVV-RDPD 296 (462)
T ss_pred Cc-chhhhhccCCCCCEEEEECCccccCCCCCCHHHHHHHHHHHHHHHhC-CCEEEE-eCCC
Confidence 21 111 112347799999865210012468999999999999999996 999998 8744
No 18
>PRK06529 amidase; Provisional
Probab=100.00 E-value=9.9e-71 Score=592.47 Aligned_cols=295 Identities=29% Similarity=0.351 Sum_probs=259.7
Q ss_pred ccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCeeEEecCcHHHHHHHHHHHHHHHccCCCCCCCCCCccEEEecC-
Q psy7560 186 LESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSKES- 264 (507)
Q Consensus 186 ~~s~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~~~~~~pL~GiP~~vKD~- 264 (507)
.+|+.+|+++|++|++|++||++++++||++.|+.+||++++++++|+++|+++|+. .+|||||||+||||
T Consensus 3 ~~~~~~l~~~~~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~--------~~PL~GvPi~vKD~~ 74 (482)
T PRK06529 3 YKDATAMAQAVQQGQVTPLELVTQAIYKAKKLNPTLNAIVSERYEEALEEAKQRDFS--------GKPFAGVPIFLKDLG 74 (482)
T ss_pred cCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCcccEEEecChHHHHHHHHhcccc--------CCCcCCCeEEEecCC
Confidence 478999999999999999999999999999999999999999999999999998852 25999999999998
Q ss_pred CCCCCCcCCcCcccccCCCCCCcHHHHHHHHHcCCeEEEccccCCcC-CCCCCCCCCCCCCCCCCCCCCCCCCCchhHHh
Q psy7560 265 TACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGGEACL 343 (507)
Q Consensus 265 ~~v~G~~tt~Gs~~~~~~~~~~da~~V~~L~~aGAii~GkTn~~e~~-~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaa 343 (507)
|+|+|++||+||..++++++.+||++|+|||++|||++||||||||+ +.++.|++||.|+||||+.|+|||||||||++
T Consensus 75 ~~v~G~~tt~Gs~~~~~~~~~~Da~vV~rLr~AGAiilGKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaa 154 (482)
T PRK06529 75 QELKGQLSTSGSRLFKNYQATKTDLYVKRLEDLGFIILGRSNTPEFGFKNISDSSLHGPVNLPFDNSRNAGGSSGGAAAL 154 (482)
T ss_pred cccCCCccCcchHHhcCCCCCcchHHHHHHHHCCCeEEEecCchHhhcCCCCCCcCCCCCCCCCCCCCCCCcCcHHHHHH
Confidence 79999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred hhcCCCceeeeccCCCcccccccccCcceeecCCCCccCCCCCCCCCCCCCCccee-ccccCChhhHHHHHHHhcCCCCC
Q psy7560 344 VSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAA-GPIVKHAEDLLPYSKCLILPDKL 422 (507)
Q Consensus 344 Vaag~~~~alGtDtgGSiR~PAa~~Gv~G~kPt~G~v~~~G~~p~~~~~~~~~~~~-Gp~ar~v~D~~~~~~~l~~~~~~ 422 (507)
||+|++++|+|||||||||+||+||||||||||+|+||..+..+.+. +.+++ |||||+|+|+++++++|.|.++.
T Consensus 155 VAaG~~~~aiGtDtgGSIRiPAa~cGvvGlKPT~Grvp~~~~~~~~~----~~~~~~Gpiarsv~D~a~~l~~~~g~~~~ 230 (482)
T PRK06529 155 VSSGIVALAAASDGGGSIRIPASFNGLIGLKPSRGRIPVGPGSYRGW----QGASVHFALTKSVRDTRRLLYYLQMYQME 230 (482)
T ss_pred HHcCCCceeeecCCCCCeecChHhhCceeEccCCCccCCCCCCcccc----ccccccCCccCcHHHHHHHHHHhhCCCCC
Confidence 99999999999999999999999999999999999999866544333 45554 89999999999999999998876
Q ss_pred CCCCCCcc------C-CCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC-CC-chHHHHHHHHH
Q psy7560 423 PAYNFDKS------V-DLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSH-IK-QFRLGYDVWRY 493 (507)
Q Consensus 423 d~~~~~~~------~-~~~~lrig~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~G~~v~~~~~-~p-~~~~~~~~~~~ 493 (507)
|+...... . ..+++|||++.+++ ....++|+++++++++++.|+++ |++|++ ++ +| .+......|..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~lrIg~~~~~~--~~~~~~p~v~~a~~~a~~~L~~~-G~~v~e-v~~~p~~~~~~~~~~~~ 306 (482)
T PRK06529 231 SPFPLATLSKESLFQSLQRPLKIAFYQRSP--DGSPVSLDAAKALKQAVTFLREQ-GHEVVE-LEEFPLDMTEVMRSYYI 306 (482)
T ss_pred CCcccCCcccchhccccCCCCEEEEECCCC--CCCCCCHHHHHHHHHHHHHHHhC-CCEEEE-cCCCCCCHHHHHHHHHH
Confidence 76544210 0 14789999997532 23468999999999999999996 999999 86 45 34555444444
Q ss_pred HHh
Q psy7560 494 WVS 496 (507)
Q Consensus 494 ~~~ 496 (507)
++.
T Consensus 307 ~~~ 309 (482)
T PRK06529 307 MNS 309 (482)
T ss_pred HHH
Confidence 433
No 19
>PRK06061 amidase; Provisional
Probab=100.00 E-value=1.4e-70 Score=590.80 Aligned_cols=290 Identities=26% Similarity=0.333 Sum_probs=260.9
Q ss_pred cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCeeEEecCcHHHHHHHHHHHHHHHccCCCCCCCCCCccEEEe
Q psy7560 183 KIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSK 262 (507)
Q Consensus 183 ~~~~~s~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~~~~~~pL~GiP~~vK 262 (507)
+...+|+.+|+++|++|++|++||++++++||+++|+.+||++++++++|+++|+++|++++++.. +|||||||+||
T Consensus 14 ~~~~~s~~~l~~~l~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~---~pL~GvPv~vK 90 (483)
T PRK06061 14 NDRLPGLTDQAYQLASGAVTSVELVRRSLRRIEASQPTLNAFRVVRAEAALAEAAEADRRRAAGDR---LPLLGVPIAVK 90 (483)
T ss_pred CcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCcCCEEEEeChHHHHHHHHHHHHHHhcCCC---CCcCCCeEEEE
Confidence 455689999999999999999999999999999999999999999999999999999999887765 59999999999
Q ss_pred cCCCCCCCcCCcCcccccCCCCCCcHHHHHHHHHcCCeEEEccccCCcC-CCCCCCCCCCCCCCCCCCCCCCCCCCchhH
Q psy7560 263 ESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGGEA 341 (507)
Q Consensus 263 D~~~v~G~~tt~Gs~~~~~~~~~~da~~V~~L~~aGAii~GkTn~~e~~-~~~~~n~~~G~~~NP~~~~~~~GGSSgGsa 341 (507)
|+|+|+|++||+||... ...+.+||++|++|+++|||++||||||||+ +.++.|++||+|+||||++|+|||||||||
T Consensus 91 D~~~v~G~~tt~Gs~~~-~~~a~~dA~vV~~Lr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsA 169 (483)
T PRK06061 91 DDVDVAGVPTAFGTAGE-VPPATADSEVVRRLRAAGAVIVGKTNTCELGQWPFTSGPAFGHTRNPWSRDHTPGGSSGGSA 169 (483)
T ss_pred cccccCCceecCCCccc-CCCCCCCHHHHHHHHHCCCEEEEecCcchhccCCCCCCCCCCCCCCCCCCCCCCCCChHHHH
Confidence 99999999999999853 2334689999999999999999999999999 999999999999999999999999999999
Q ss_pred HhhhcCCCceeeeccCCCcccccccccCcceeecCCCCccCCCCCCCCCCCCCCcceeccccCChhhHHHHHHHhcCCCC
Q psy7560 342 CLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDK 421 (507)
Q Consensus 342 aaVaag~~~~alGtDtgGSiR~PAa~~Gv~G~kPt~G~v~~~G~~p~~~~~~~~~~~~Gp~ar~v~D~~~~~~~l~~~~~ 421 (507)
++||+|++++|+|||||||||+||+||||||||||+|++|+.|+.+... ++|++|||||||+|+++++++|.++++
T Consensus 170 aAVAaG~~~~alGtDtgGSIRiPAa~cGvvG~KPT~G~vs~~g~~~~~~----~~d~~Gp~arsv~D~a~~~~~l~g~d~ 245 (483)
T PRK06061 170 AAVAAGLVTAAIGSDGAGSVRIPAAWTHLVGIKPQRGRISTWPLPEAFN----GLTVNGPLARTVADAALLLDAASGNHP 245 (483)
T ss_pred HHHHcCCCceEeecCCCCcchhchhhcCceeecCCCCccCCCCCCcccc----cCceeCCEeCCHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999887766 889999999999999999999999887
Q ss_pred CCCCCCCc-------cCCCCCcEEEEECCCCC-CCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCC
Q psy7560 422 LPAYNFDK-------SVDLAKLKVFYVEEPGD-MKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIK 482 (507)
Q Consensus 422 ~d~~~~~~-------~~~~~~lrig~~~~~g~-~~~~~~~~~~~~~~~~~~~~L~~~~G~~v~~~~~~p 482 (507)
.|+..... ....+++|||++.+++. .+...++|+++++++++++.|+++ |++|++ ++++
T Consensus 246 ~d~~~~~~~~~~~~~~~~~~~lrig~~~~~~~~~~~~~~~p~v~~a~~~a~~~L~~~-G~~v~~-~~~~ 312 (483)
T PRK06061 246 GDRHRPPPVTVSDAVGRAPGPLRIALSTRFPFTGFPAKLHPEIRAAVRRVAEQLALL-GHTVVP-ADPD 312 (483)
T ss_pred CCCcccCCccchhhhccCCCCcEEEEECCccccccccCCCHHHHHHHHHHHHHHHHC-CCEEEE-eCCc
Confidence 66543211 11247899999876430 012458999999999999999996 999998 8754
No 20
>PRK11910 amidase; Provisional
Probab=100.00 E-value=2.5e-70 Score=591.62 Aligned_cols=299 Identities=22% Similarity=0.287 Sum_probs=267.2
Q ss_pred ccccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC---CCeeEEecCcHHHHHHHHHHHHHHHccCCCCCCCCCCcc
Q psy7560 182 NKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNP---YLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVP 258 (507)
Q Consensus 182 ~~~~~~s~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~---~~na~~~~~~~~al~~A~~~d~~~~~~~~~~~~pL~GiP 258 (507)
..+.+.++.+|++++++|++|++||+++||+||+++|+ .+||++++++ +|+++|+++|++++.+ ++||||||
T Consensus 160 ~~i~~~ti~~L~~~l~~g~lT~~elv~a~L~RI~~~n~~g~~LnA~i~~~~-~Al~~A~~lD~~~~~~----~gPL~GIP 234 (615)
T PRK11910 160 PLIIGADVTKLQQLIATKQLSYKELAGIYLNRIKKYDQNGLNLNAITEINP-TIIAEAEQLDKENTTN----KSALYGMP 234 (615)
T ss_pred ccchhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCceeEEEEcCH-HHHHHHHHHHHHhccC----CCCcCCCE
Confidence 34677899999999999999999999999999999997 7999999987 4899999999876542 48999999
Q ss_pred EEEecCCCCCCCcCCcCcccccCCCCCCcHHHHHHHHHcCCeEEEccccCCcC-CC-----CCCCCCCCCCCCCCCCCCC
Q psy7560 259 FTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-WS-----ESRNMVYGQSNNPYNLCRT 332 (507)
Q Consensus 259 ~~vKD~~~v~G~~tt~Gs~~~~~~~~~~da~~V~~L~~aGAii~GkTn~~e~~-~~-----~~~n~~~G~~~NP~~~~~~ 332 (507)
|+|||||+++|++||+||..+.++++.+||++|++||++||||+|||||+||+ +. .++|++||+|+||||++++
T Consensus 235 v~VKDni~t~G~pTTaGS~al~~~~p~~DA~vV~rLr~AGAIIlGKTNm~EfA~~~~~~~~~g~s~~~G~t~NP~~~~r~ 314 (615)
T PRK11910 235 VLLKDNIGTKELPTSAGTVALKDWVIGKDATIVENLKANGALILGKTNMSEWAAGMDEDLPNGYSGKKGQSKNPYSSNLD 314 (615)
T ss_pred EEEEcCcccCCCccCcccHhhcCCCCCCCHHHHHHHHHCCCEEEEEeCcchhhhCCCCCCCCCCCCCCCCcCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999 63 4678899999999999999
Q ss_pred CCCCCchhHHhhhcCCCceeeeccCCCcccccccccCcceeecCCCCccCCCCCCCCCCCCCCcceeccccCChhhHHHH
Q psy7560 333 TGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPY 412 (507)
Q Consensus 333 ~GGSSgGsaaaVaag~~~~alGtDtgGSiR~PAa~~Gv~G~kPt~G~v~~~G~~p~~~~~~~~~~~~Gp~ar~v~D~~~~ 412 (507)
|||||||||++||+|++++|+|||||||||+||+||||||||||+|++|+.|++|+++ ++|++|||||||+|++++
T Consensus 315 pGGSSsGSAAAVAaG~a~~AiGTDTgGSIR~PAa~cGvVGlKPT~G~vSr~GviPls~----slDtvGPmaRsV~D~a~l 390 (615)
T PRK11910 315 PSGSSSGSATAATSDFAAIAIGTETNGSIITPASAQSAVGYKPSQGLVNNKGIIPLSS----RFDTPGPLTRTVNDAYLT 390 (615)
T ss_pred CCCCCchHHHHHhcCCceEEeecCCCCccccchHHcCceeEecCCCCCCCCCCcCCcC----CCCeeccccCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 999999999999999999
Q ss_pred HHHhcCCCCCCCCCCCccCCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHH
Q psy7560 413 SKCLILPDKLPAYNFDKSVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIKQFRLGYDVWR 492 (507)
Q Consensus 413 ~~~l~~~~~~d~~~~~~~~~~~~lrig~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~G~~v~~~~~~p~~~~~~~~~~ 492 (507)
+++|.|.+..+++.. ..++++|||++.+ ..++++.++++++++.|+++ |++|++.+++|.+......+.
T Consensus 391 l~vi~g~~~~~~l~~---~~lkglRIGv~~~-------~~~~~v~~a~~~a~~~L~~~-Ga~Vve~~~~p~~~~~~~~~~ 459 (615)
T PRK11910 391 TNALTNTTSNPPLST---DALKGKRIGLLAD-------GESNEETAVIKKIKLDLQKA-GATIIEGIAVGEFEQKDTDYA 459 (615)
T ss_pred HHHhcCCCCcCccCc---ccCCCCEEEEECC-------CCCHHHHHHHHHHHHHHHHC-CCEEEeCCCCccHHHHHHHHH
Confidence 999999876454422 2478899999864 24789999999999999996 999998445666665555555
Q ss_pred HHHhhcCc
Q psy7560 493 YWVSKEKD 500 (507)
Q Consensus 493 ~~~~~d~~ 500 (507)
.++..|..
T Consensus 460 ~l~~~E~~ 467 (615)
T PRK11910 460 SLLNADFK 467 (615)
T ss_pred HHHHHHHH
Confidence 55555443
No 21
>PRK08186 allophanate hydrolase; Provisional
Probab=100.00 E-value=1.5e-70 Score=601.34 Aligned_cols=285 Identities=22% Similarity=0.259 Sum_probs=260.7
Q ss_pred ccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCeeEEecCc-HHHHHHHHHHHHHHHccCCCCCCCCCCccEEEecC
Q psy7560 186 LESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRY-TEALEEAKAADQKIALEEDISDKPYLGVPFTSKES 264 (507)
Q Consensus 186 ~~s~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~-~~al~~A~~~d~~~~~~~~~~~~pL~GiP~~vKD~ 264 (507)
.+|+.+|+++|++|++|++||++++++||++ ++.+|+++.+.. ++++++|+++|++++ . .+||+||||+||||
T Consensus 6 ~~t~~~l~~~~~~g~~t~~evv~a~l~ri~~-~~~~~a~i~~~~~~~a~~~A~~ld~~~~---~--~gPL~GVP~aVKDn 79 (600)
T PRK08186 6 DLTLASLRAAYRAGTLTPRAVVAALYARIAA-VDDPEVWIHLRPEADLLAQAAALEARDP---A--ALPLYGVPFAVKDN 79 (600)
T ss_pred cCCHHHHHHHHHcCCCCHHHHHHHHHHHHHh-cCCCCEEEEeCchHHHHHHHHHHhhhcc---c--cCCCCCCeEEeecc
Confidence 4699999999999999999999999999998 678999999886 689999999998765 2 48999999999999
Q ss_pred CCCCCCcCCcCcccccCCCCCCcHHHHHHHHHcCCeEEEccccCCcC-CCCCCCCCCCCCCCCCCCCCCCCCCCchhHHh
Q psy7560 265 TACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGGEACL 343 (507)
Q Consensus 265 ~~v~G~~tt~Gs~~~~~~~~~~da~~V~~L~~aGAii~GkTn~~e~~-~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaa 343 (507)
|||+|++||+||..+. +.+.+||++|+||+++|||++||||||||+ +..+.|+.||.++||||++|++||||||||++
T Consensus 80 idvaG~pTTaGs~~~~-~~p~~DA~vV~rLr~AGAIilGKTN~~Efa~g~~g~n~~yG~t~NP~~~~~~~GGSSsGSAaA 158 (600)
T PRK08186 80 IDVAGLPTTAACPAFA-YTPERDATVVARLRAAGAIVIGKTNLDQFATGLVGTRSPYGAVRNAFDPEYVSGGSSSGSAVA 158 (600)
T ss_pred eecCCcccCcCCHhHc-CCCCcChHHHHHHHHCCCEEEeeecchhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHH
Confidence 9999999999999985 788999999999999999999999999999 99999999999999999999999999999999
Q ss_pred hhcCCCceeeeccCCCcccccccccCcceeecCCCCccCCCCCCCCCCCCCCcceeccccCChhhHHHHHHHhcCCCCCC
Q psy7560 344 VSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLP 423 (507)
Q Consensus 344 Vaag~~~~alGtDtgGSiR~PAa~~Gv~G~kPt~G~v~~~G~~p~~~~~~~~~~~~Gp~ar~v~D~~~~~~~l~~~~~~d 423 (507)
||+|+++||||||||||||+||+||||||||||+|++|+.|++|.++ ++|++|||||||+|+++++++|.+.|+.|
T Consensus 159 VAaG~~~~alGTDtgGSiRiPAa~cGlvGlKPT~G~vs~~Gv~p~~~----slD~vGp~Arsv~D~~~~l~vl~g~d~~D 234 (600)
T PRK08186 159 VALGLVSFALGTDTAGSGRVPAAFNNIVGLKPTLGLLSTRGVVPACR----TLDCVSVFALTVDDADAVLAVMAGFDPAD 234 (600)
T ss_pred HHcCCcceEeeecCCCcchhhhHHhCceEEeCCCCcccCCCcccccc----cCCceecccCCHHHHHHHHHHhcCCCCCC
Confidence 99999999999999999999999999999999999999999999997 99999999999999999999999999888
Q ss_pred CCCCCcc-----CCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCCchH
Q psy7560 424 AYNFDKS-----VDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIKQFR 485 (507)
Q Consensus 424 ~~~~~~~-----~~~~~lrig~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~G~~v~~~~~~p~~~ 485 (507)
+++.+.+ ...+++|||++.++. .....+++++++++++++.|+++ |++|++ +++|.+.
T Consensus 235 ~~s~~~p~~~~~~~~~~lrIgv~~~~~--~~~~~~~~v~~a~~~a~~~L~~~-G~~v~e-i~~~~~~ 297 (600)
T PRK08186 235 PYSRANPADAPAALPAGPRVGVPRAAQ--LEFFGDAEAEAAFAAALARLEAL-GAELVE-IDFSPFL 297 (600)
T ss_pred cccccCCcccccccCCCCEEEEEcchh--ccccCCHHHHHHHHHHHHHHHHc-CCeEEE-ecchhHH
Confidence 7764322 124679999986432 11225899999999999999996 999999 9987664
No 22
>PRK06828 amidase; Provisional
Probab=100.00 E-value=4.8e-70 Score=585.64 Aligned_cols=291 Identities=23% Similarity=0.304 Sum_probs=262.2
Q ss_pred ccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC---CCCeeEEecCcHHHHHHHHHHHHHHHccCCCCCCCCCCccEEEe
Q psy7560 186 LESATQIAKKIRNKNITSVEVVQAFIERIEQVN---PYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSK 262 (507)
Q Consensus 186 ~~s~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~---~~~na~~~~~~~~al~~A~~~d~~~~~~~~~~~~pL~GiP~~vK 262 (507)
.+++.+|+++|++|++||+||+++|++||+++| +.+|++++++++ ++++|+++|+++++|.. .+||+||||+||
T Consensus 12 ~~~~~~l~~~l~~g~~t~~el~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~g~~--~gpL~GvPv~vK 88 (491)
T PRK06828 12 ELTIHDIQTAMEDGKLTSKELVMYYLHRIAKYDQDGPKINSILEINPD-AIFIAEALDHERKIKGV--RGPLHGIPVLLK 88 (491)
T ss_pred cCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCeeEEEEecCHH-HHHHHHHHHHHHhcCCC--CCCccCceeeee
Confidence 468999999999999999999999999999999 589999998866 89999999999888766 599999999999
Q ss_pred cCCCCCC-CcCCcCcccccCCCCCCcHHHHHHHHHcCCeEEEccccCCcC-C-----CCCCCCCCCCCCCCCCC---CCC
Q psy7560 263 ESTACKG-LSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-W-----SESRNMVYGQSNNPYNL---CRT 332 (507)
Q Consensus 263 D~~~v~G-~~tt~Gs~~~~~~~~~~da~~V~~L~~aGAii~GkTn~~e~~-~-----~~~~n~~~G~~~NP~~~---~~~ 332 (507)
|||+|+| ++||+||..+.++++.+||++|++||++|||++||||||||+ + .++.|++||+|+||||+ +|+
T Consensus 89 D~~~v~gg~~tt~Gs~~~~~~~~~~da~vV~~Lr~aGaii~GKTn~~Efa~~~~~~~~~g~n~~~G~t~NP~d~~~~~r~ 168 (491)
T PRK06828 89 DNIETNDSMHTSAGTIALEQHISSEDAFLVTKLREAGAVILGKANMTELANFMSFEMWAGYSARGGQTINPYGTGEDDMF 168 (491)
T ss_pred eeEEecCCCcCCcCcHHHcCCCCCCChHHHHHHHHCCCEEEeecChHHHhhccCCCCCCCcCCCCCCcCCCCCCccCCcC
Confidence 9999996 999999999999999999999999999999999999999999 5 47889999999999999 689
Q ss_pred CCCCCchhHHhhhcCCCceeeeccCCCcccccccccCcceeecCCCCccCCCCCCCCCCCCCCcceeccccCChhhHHHH
Q psy7560 333 TGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPY 412 (507)
Q Consensus 333 ~GGSSgGsaaaVaag~~~~alGtDtgGSiR~PAa~~Gv~G~kPt~G~v~~~G~~p~~~~~~~~~~~~Gp~ar~v~D~~~~ 412 (507)
|||||||||++||+|++++|+|||||||||+||+||||||||||+|++|+.|++|+++ ++|++|||||+|+|++++
T Consensus 169 pGGSSgGsAaaVAag~~~~aiGtDtgGSiRiPAa~cGvvGlKPT~G~vs~~G~~p~~~----s~d~~Gp~arsv~D~a~~ 244 (491)
T PRK06828 169 VGGSSTGSAIAVAANFTVVSVGTETDGSILSPAVQNSVVGIKPTVGLISRRGIIPFTY----SQDTAGPFARTVTDAAIL 244 (491)
T ss_pred CCcCchHHHHHHHcCCCceEeecCCCCccccchhhcCceeecCCCCCccCCCCCCCcc----CCCeeccccCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 999999999999999999
Q ss_pred HHHhcCCCCCCCCCCCc------c-------CCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcC
Q psy7560 413 SKCLILPDKLPAYNFDK------S-------VDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLS 479 (507)
Q Consensus 413 ~~~l~~~~~~d~~~~~~------~-------~~~~~lrig~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~G~~v~~~~ 479 (507)
+++|.|+++.|+++... . .+++++|||++.++...+. .++++++++++++++.|+++ |++|++.+
T Consensus 245 ~~~l~g~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~lrigv~~~~~~~~~-~~~~~v~~a~~~a~~~L~~~-G~~v~~~~ 322 (491)
T PRK06828 245 LGSLTGVDEKDVVTHKSEGIAEHDYTKYLDANGLNGAKIGVYNNAPKEYY-ESGEYDEKLFKETIEVLRSE-GATVVEDI 322 (491)
T ss_pred HHHHhCCCccCccccccCcCCCCchhhhhccccCCCCEEEEEcCcccccc-CCCHHHHHHHHHHHHHHHhc-CCEEEecc
Confidence 99999998877654321 1 1368899999754110122 58999999999999999996 99998745
Q ss_pred CCCchH
Q psy7560 480 HIKQFR 485 (507)
Q Consensus 480 ~~p~~~ 485 (507)
++|.+.
T Consensus 323 ~~p~~~ 328 (491)
T PRK06828 323 DIPSFH 328 (491)
T ss_pred cCccch
Confidence 566543
No 23
>PRK06707 amidase; Provisional
Probab=100.00 E-value=6.3e-69 Score=580.53 Aligned_cols=286 Identities=24% Similarity=0.299 Sum_probs=258.5
Q ss_pred cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC---CCCeeEEecCcHHHHHHHHHHHHHHHccCCCCCCCCCCccE
Q psy7560 183 KIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVN---PYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPF 259 (507)
Q Consensus 183 ~~~~~s~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~---~~~na~~~~~~~~al~~A~~~d~~~~~~~~~~~~pL~GiP~ 259 (507)
.+.++++.+|++++++|++|++|++++|++||+++| +.+|++++++++ |+++|+++|++++++.. +|||||||
T Consensus 67 ~i~~~~i~~l~~~~~~g~lt~~el~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~~---~pL~GiPi 142 (536)
T PRK06707 67 EVVNATVDELQKMIDDGKLSYEELTSIYLFRIQEHDQNGITLNSVTEINPN-AMEEARKLDQERSRNKK---SNLYGIPV 142 (536)
T ss_pred hhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCceEEEEECCHH-HHHHHHHHHHHHhcCCC---CCcCCCeE
Confidence 356689999999999999999999999999999998 479999999764 99999999998876643 89999999
Q ss_pred EEecCCCC-CCCcCCcCcccccCCCCCCcHHHHHHHHHcCCeEEEccccCCcC-C-----CCCCCCCCCCCCCCCCC-CC
Q psy7560 260 TSKESTAC-KGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-W-----SESRNMVYGQSNNPYNL-CR 331 (507)
Q Consensus 260 ~vKD~~~v-~G~~tt~Gs~~~~~~~~~~da~~V~~L~~aGAii~GkTn~~e~~-~-----~~~~n~~~G~~~NP~~~-~~ 331 (507)
+|||||++ +|++||+||..+.++++.+||++|++||++|||++|||||+||+ . ..++|++||+|+||||+ .+
T Consensus 143 ~vKD~i~~~~g~~TtaGs~~l~~~~~~~DA~vV~rLr~AGAiilGKtnm~E~a~~~~~~~~~g~s~~~G~t~NP~~~~~~ 222 (536)
T PRK06707 143 VVKDNVQTAKVMPTSAGTYVLKDWIADQDATIVKQLKEEGAFVLGKANMSEWANYLSFTMPSGYSGKKGQNLNPYGPIKF 222 (536)
T ss_pred EEecccccCCCCccCcccHhhccCCCCCChHHHHHHHHCCCEEEEecCchhhhccCCCCCCCCCCCCCCCCCCCCCcccC
Confidence 99999999 99999999999999999999999999999999999999999999 4 46788899999999998 68
Q ss_pred CCCCCCchhHHhhhcCCCceeeeccCCCcccccccccCcceeecCCCCccCCCCCCCCCCCCCCcceeccccCChhhHHH
Q psy7560 332 TTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLP 411 (507)
Q Consensus 332 ~~GGSSgGsaaaVaag~~~~alGtDtgGSiR~PAa~~Gv~G~kPt~G~v~~~G~~p~~~~~~~~~~~~Gp~ar~v~D~~~ 411 (507)
+|||||||||++||+|++++|||||||||||+||+||||||||||+|++|+.|++|+++ ++|++|||+|||+|+++
T Consensus 223 ~pGGSSsGSAaAVAag~~~~aiGtDtgGSIr~PAs~~GvvGlKPT~G~vs~~Gv~p~s~----slDt~Gp~artV~D~a~ 298 (536)
T PRK06707 223 DTSGSSSGSATVVAADFAPLAVGTETTGSIVAPAAQQSVVGLRPSLGMVSRTGIIPLAE----TLDTAGPMARTVKDAAT 298 (536)
T ss_pred CCCCCCchHHHHHhCCCCceEEecCCCCcccccHHHcCeEEEeCCCCcccCCCCcCccc----ccCeecCeeCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998 99999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCcc-------------CCCCCcEEEEECCCCCCCCCCCCHHHHHH-HHHHHHHHHhcCCCEEEE
Q psy7560 412 YSKCLILPDKLPAYNFDKS-------------VDLAKLKVFYVEEPGDMKVSPMSKDMIQA-IRKCVNALKVVSHSEPED 477 (507)
Q Consensus 412 ~~~~l~~~~~~d~~~~~~~-------------~~~~~lrig~~~~~g~~~~~~~~~~~~~~-~~~~~~~L~~~~G~~v~~ 477 (507)
++++|.|.|+.|+.+...+ ..++++|||++.+. ..++++.++ ++++++.|+++ |++|++
T Consensus 299 ~l~~~~g~d~~d~~~~~~~~~~~~~~~~~l~~~~l~~~rigv~~~~------~~~~~~~~a~~~~a~~~L~~~-Ga~iv~ 371 (536)
T PRK06707 299 LFNAMIGYDEKDVMTEKVKDKERIDYTKDLSIDGLKGKKIGLLFSV------DQQDENRKAVAEKIRKDLQDA-GAILTD 371 (536)
T ss_pred HHHHHcCCCCCccccccccccCCcchhhhccccCCCCCEEEEECCc------CCCHHHHHHHHHHHHHHHHHc-CCEEEe
Confidence 9999999998776543111 13688999998752 257888888 59999999996 999987
Q ss_pred cCCCCc
Q psy7560 478 LSHIKQ 483 (507)
Q Consensus 478 ~~~~p~ 483 (507)
++++|.
T Consensus 372 ~~~l~~ 377 (536)
T PRK06707 372 YIQLNN 377 (536)
T ss_pred ccCCch
Confidence 455653
No 24
>PRK05962 amidase; Validated
Probab=100.00 E-value=6.9e-69 Score=569.30 Aligned_cols=262 Identities=25% Similarity=0.326 Sum_probs=243.8
Q ss_pred HHHHHHHHHhCCCCeeEEecCcHHHHHHHHHHHHHHHccCCCCCCCCCCccEEEecCCCCCCCcCCcCcccccCCCC-CC
Q psy7560 208 QAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKA-DA 286 (507)
Q Consensus 208 ~~~l~ri~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~~~~~~pL~GiP~~vKD~~~v~G~~tt~Gs~~~~~~~~-~~ 286 (507)
+++++||++.|+.+|++++.++++|+++|+++|+++++|.. .+||+||||+|||||+|+|++||+||..+.++++ .+
T Consensus 2 ~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~--~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~~~~~~~ 79 (424)
T PRK05962 2 EATLARLAARAGEEHVFSKLYAERARAEADAADARRRAGRS--LGPLDGRIVSIKDLFDVAGEPTLAGSVIRRDAPPAGA 79 (424)
T ss_pred HHHHHHHHhhCCcccEEEEECHHHHHHHHHHHHHHHHcCCC--CCCCCCCEEEEEeeeecCCcccCCCChhhhcCCCCcC
Confidence 68999999999999999999999999999999999888876 5999999999999999999999999999999888 68
Q ss_pred cHHHHHHHHHcCCeEEEccccCCcC-CCCCCCCCCCCCCCCCCCCCCCCCCCchhHHhhhcCCCceeeeccCCCcccccc
Q psy7560 287 DAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPA 365 (507)
Q Consensus 287 da~~V~~L~~aGAii~GkTn~~e~~-~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVaag~~~~alGtDtgGSiR~PA 365 (507)
||++|+||+++|||++||||||||+ +.++.|++||+|+||||++|+|||||||||++||+|++++|+|||||||||+||
T Consensus 80 dA~vV~rL~~aGAiilGKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~alGtDtgGSiRiPA 159 (424)
T PRK05962 80 DALIVQRLRNAGAVIIGKTHMTEFAFTPVGLNPHYGEPGNAIDPARIPGGSSSGAAVSVAEGTSEIAIGSDTGGSVRIPA 159 (424)
T ss_pred ChHHHHHHHHCCCEEEEecCchHHhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCceEEeeCCCCcchhhh
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcceeecCCCCccCCCCCCCCCCCCCCcceeccccCChhhHHHHHHHhcCCCCCCCCCCCccCCCCCcEEEEECCCC
Q psy7560 366 LYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPAYNFDKSVDLAKLKVFYVEEPG 445 (507)
Q Consensus 366 a~~Gv~G~kPt~G~v~~~G~~p~~~~~~~~~~~~Gp~ar~v~D~~~~~~~l~~~~~~d~~~~~~~~~~~~lrig~~~~~g 445 (507)
+||||||||||+|++|+.|++|+++ ++|++|||||||+|+++++++|.++++.+.. ....+++|||++.+.+
T Consensus 160 a~cGv~GlKPT~G~v~~~G~~~~~~----s~d~~Gp~arsv~D~~~~~~vl~g~~~~~~~----~~~~~~lrig~~~~~~ 231 (424)
T PRK05962 160 ALNGLVGFKPTARRIPLEGAFPLSP----SLDSIGPLARTVADCAAADAVMAGEKPIPLE----VLPVAGLRIGLPKGYL 231 (424)
T ss_pred HhhCceeeecCCCceeCCCcccCcc----ccCccccccCCHHHHHHHHHHHcCCCCCccc----ccCcCCcEEEEEcccc
Confidence 9999999999999999999999887 8999999999999999999999998764322 1235789999987532
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCCch
Q psy7560 446 DMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIKQF 484 (507)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~L~~~~G~~v~~~~~~p~~ 484 (507)
...++++++++++++++.|+++ |++|++ +++|.+
T Consensus 232 ---~~~~~~~v~~a~~~a~~~L~~~-G~~v~~-~~~~~~ 265 (424)
T PRK05962 232 ---LADMEPDVAAAFEASLAALEKA-GARIAD-LAIDDL 265 (424)
T ss_pred ---cccCCHHHHHHHHHHHHHHHHC-CCEEEE-eccchH
Confidence 4568999999999999999996 999999 988754
No 25
>PRK06565 amidase; Validated
Probab=100.00 E-value=1.5e-68 Score=573.94 Aligned_cols=291 Identities=27% Similarity=0.332 Sum_probs=260.1
Q ss_pred cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-----CCCeeEEecCcHHHHHHHHHHHHHHHccCCCCCCCCCCc
Q psy7560 183 KIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVN-----PYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGV 257 (507)
Q Consensus 183 ~~~~~s~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~-----~~~na~~~~~~~~al~~A~~~d~~~~~~~~~~~~pL~Gi 257 (507)
++.++|+.+|++++++|++|++||+++|++||+++| +.+|+++.++. +|+++|+++|+++++|+. ++|||||
T Consensus 3 ~i~~~si~~L~~~l~~g~~t~~elv~a~l~ri~~~~~~~~~~~lna~~~~~~-~Al~~A~~~D~~~~~g~~--~gpL~GI 79 (566)
T PRK06565 3 EVTEVSIAELRAALESGRTTAVELVKAYLARIDAYDGPATGTALNAVVVRNP-DALKEAEASDARRARGET--LGPLDGI 79 (566)
T ss_pred ccccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCccccCcceEEEEecCH-HHHHHHHHHHHHHhcCCC--CCCCCCC
Confidence 356789999999999999999999999999999999 68999998765 599999999999888876 4999999
Q ss_pred cEEEecCCCCCCCcCCcCcccccCCCCCCcHHHHHHHHHcCCeEEEccccCCcC-CCCCCCCCCCCCCCCCCCCC----C
Q psy7560 258 PFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCR----T 332 (507)
Q Consensus 258 P~~vKD~~~v~G~~tt~Gs~~~~~~~~~~da~~V~~L~~aGAii~GkTn~~e~~-~~~~~n~~~G~~~NP~~~~~----~ 332 (507)
||+|||||+++|++||+||..+.++++.+||++|++||+||||++||||||||+ +..+ |++||+++||||+.+ +
T Consensus 80 Pi~vKD~~~v~G~~TT~Gs~~l~~~~~~~DA~vV~rLr~AGAIilGKTnm~E~a~g~~~-~~~~G~t~NP~n~~~~~~~~ 158 (566)
T PRK06565 80 PYTAKDSYLVKGLTAASGSPAFKDLVAQRDAFTIERLRAAGAICLGKTNMPPMANGGMQ-RGVYGRAESPYNAAYLTAPF 158 (566)
T ss_pred EEEEecccccCCCCcccccHhhcCCCCCCCHHHHHHHHHCCCEEEEecccchhhhCCCC-CCCCCCcCCCcCcccCcCCC
Confidence 999999999999999999999999999999999999999999999999999999 6655 779999999999999 5
Q ss_pred CCCCCchhHHhhhcCCCceeeeccCCCcccccccccCcceeecCCCCccCCCCCCCCCCCCCCcceeccccCChhhHHHH
Q psy7560 333 TGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPY 412 (507)
Q Consensus 333 ~GGSSgGsaaaVaag~~~~alGtDtgGSiR~PAa~~Gv~G~kPt~G~v~~~G~~p~~~~~~~~~~~~Gp~ar~v~D~~~~ 412 (507)
+||||||||++||+|+++||+|||||||||+||+||||||||||+|++|+.|++|+++ ++|++|||+|+|+|++++
T Consensus 159 pGGSSgGsAaAVAag~~~~alGtDtgGSIR~PAa~~GivG~KPT~G~vs~~Gv~p~~~----s~D~vGp~aRsV~D~a~~ 234 (566)
T PRK06565 159 ASGSSNGAGTATAASFSAFGLAEETWSSGRGPASNNGLCAYTPSRGVISVRGNWPLTP----TMDVVVPYARTMADLLEV 234 (566)
T ss_pred CCCCCccHHHHHhCCCCcceeecCCCCchhhhHHHcCeeEEeCCCCccCCCCcccccC----CCCeecceeCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988 899999999999999999
Q ss_pred HHHhcCCCCCCCCC---------CC-----------c----cCCCCCcEEEEECCCC--CC---------------CCCC
Q psy7560 413 SKCLILPDKLPAYN---------FD-----------K----SVDLAKLKVFYVEEPG--DM---------------KVSP 451 (507)
Q Consensus 413 ~~~l~~~~~~d~~~---------~~-----------~----~~~~~~lrig~~~~~g--~~---------------~~~~ 451 (507)
+++|.|.|+.|... .+ . ...++++|||++...- .. ....
T Consensus 235 l~vl~g~D~~d~~~~~~~~~~~~~p~~~~~~~~~y~~~~~~~~~l~g~RIGv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (566)
T PRK06565 235 LDVIVADDPDTRGDLWRLQPWVPIPKASEVRPASYLALAAGADALKGKRFGVPRMYINADPDAGTSENPGIGGPTGQRIH 314 (566)
T ss_pred HHHhcCCCcccccchhhccccccCccccccCccchhhhhccccCCCCCEEEEEChhhccccccccccccccccccccccC
Confidence 99999988765321 00 0 1236789999986410 00 0012
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCEEEEcCCCCc
Q psy7560 452 MSKDMIQAIRKCVNALKVVSHSEPEDLSHIKQ 483 (507)
Q Consensus 452 ~~~~~~~~~~~~~~~L~~~~G~~v~~~~~~p~ 483 (507)
+++++.++++++++.|+++ |++|++ +++|.
T Consensus 315 ~~~~v~~~~~~a~~~L~~~-Ga~vv~-v~~p~ 344 (566)
T PRK06565 315 TRPSVIDLWEAARRALEAA-GAEVIE-VDFPL 344 (566)
T ss_pred CCHHHHHHHHHHHHHHHHC-CCEEEE-eecCC
Confidence 5799999999999999996 999999 98875
No 26
>PRK07235 amidase; Provisional
Probab=100.00 E-value=1.5e-68 Score=576.31 Aligned_cols=298 Identities=21% Similarity=0.286 Sum_probs=270.8
Q ss_pred cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCeeEEecCcHHHHHHHHHHHHHHHccCCCCCCCCCCccEEEe
Q psy7560 183 KIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSK 262 (507)
Q Consensus 183 ~~~~~s~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~~~~~~pL~GiP~~vK 262 (507)
++.++++.+++++++ +++++.|++++++++|+..++..|++.....++++..|.+.+.+ .+|.. .+||+||||+||
T Consensus 21 ~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~g~~--~gpL~GvPiavK 96 (502)
T PRK07235 21 DLTDEELASYLSLMQ-ASLDAYDRIDELPDEIPPVKYPRTPGYRPEAEENPYGAWYVKTS-IKGAA--EGKLAGKTVALK 96 (502)
T ss_pred CCChhhHHHHHHHHH-hccCHHHHHHHHhhcccccCCCcccccccCcccChhcChhhhhc-cCCCC--CCCcCCceEEEe
Confidence 466789999999999 99999999999999999999999999998889998889888876 55665 599999999999
Q ss_pred cCCCCCCCcCCcCcccccCCCCCCcHHHHHHHHHcCCeEEEccccCCcC-CCCCCCCCCCCCCCCCCCCCCCCCCCchhH
Q psy7560 263 ESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGGEA 341 (507)
Q Consensus 263 D~~~v~G~~tt~Gs~~~~~~~~~~da~~V~~L~~aGAii~GkTn~~e~~-~~~~~n~~~G~~~NP~~~~~~~GGSSgGsa 341 (507)
|||+|+|++||+||..++++++.+||++|+||++||||++||||||||+ +..+.|+.||+|+||||++|+|||||||||
T Consensus 97 D~i~v~G~ptt~Gs~~~~~~~p~~DA~vV~rL~~AGAii~GKTn~~Ef~~~~~t~n~~~G~t~NP~~~~~~~GGSSgGsA 176 (502)
T PRK07235 97 DNVAVAGVPMMNGSSTLEGFVPSFDATVVTRLLDAGATIVGKATCEDLCFSGGSHTSDPGPVHNPRDPGYSAGGSSSGSA 176 (502)
T ss_pred cccccCCcccCccChhhcCCCCCCCHHHHHHHHHCCCEEEEEecchhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcHHHH
Confidence 9999999999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HhhhcCCCceeeeccCCCcccccccccCcceeecCCCCccCCCCCCCCCCCCCCcceeccccCChhhHHHHHHHhcCCCC
Q psy7560 342 CLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDK 421 (507)
Q Consensus 342 aaVaag~~~~alGtDtgGSiR~PAa~~Gv~G~kPt~G~v~~~G~~p~~~~~~~~~~~~Gp~ar~v~D~~~~~~~l~~~~~ 421 (507)
++||+|++++|||||||||||+||+||||||||||+|+||+.|++|.++ ++|++|||||||+|+++++++|.|+|+
T Consensus 177 AaVAaG~v~~aiGtDtGGSIRiPAa~cGvvGlKPT~G~vp~~G~~~~~~----sld~~Gpmarsv~D~a~ll~viag~d~ 252 (502)
T PRK07235 177 ALVAAGEVDMAIGGDQGGSIRIPSAWCGIYGMKPTHGLVPYTGAFPIER----TIDHLGPMTATVRDNALLLEVIAGRDG 252 (502)
T ss_pred HHHHcCCCCeEEecCCCCCcCccHHHcCcceecCCCcccCCCCCCCccc----ccCeeeceeCCHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999999999887 899999999999999999999999988
Q ss_pred CCCCCCCcc----------CCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHH
Q psy7560 422 LPAYNFDKS----------VDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIKQFRLGYDVW 491 (507)
Q Consensus 422 ~d~~~~~~~----------~~~~~lrig~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~G~~v~~~~~~p~~~~~~~~~ 491 (507)
.|+.....+ .+.+++|||++.++ +....++++++++++++++.|++. |++|++ +++|.+.....+|
T Consensus 253 ~d~~~~~~~~~~~~~~~l~~~~~~lrIgv~~~~--~~~~~~~~~v~~a~~~a~~~L~~~-G~~V~~-v~~p~~~~~~~~~ 328 (502)
T PRK07235 253 LDPRQPAQPPVDDYTAALDRGVKGLKIGILREG--FGLPNSEPEVDEAVRAAAKRLEDL-GATVEE-VSIPLHRLALAIW 328 (502)
T ss_pred CCccccccCCccchhHHhccCCcCCEEEEeccc--cCCCCCCHHHHHHHHHHHHHHHHC-CCEEEE-eCCCchhhHHHHH
Confidence 787654211 12578999998752 112468999999999999999996 999999 9988765554444
Q ss_pred H
Q psy7560 492 R 492 (507)
Q Consensus 492 ~ 492 (507)
.
T Consensus 329 ~ 329 (502)
T PRK07235 329 N 329 (502)
T ss_pred H
Confidence 4
No 27
>TIGR02713 allophanate_hyd allophanate hydrolase. Allophanate hydrolase catalyzes the second reaction in an ATP-dependent two-step degradation of urea to ammonia and C02, following the action of the biotin-containing urea carboxylase. The yeast enzyme, a fusion of allophanate hydrolase to urea carboxylase, is designated urea amidolyase.
Probab=100.00 E-value=2.6e-64 Score=547.21 Aligned_cols=252 Identities=24% Similarity=0.267 Sum_probs=228.2
Q ss_pred eeEEecCc-HHHHHHHHHHHHHHHccCCCCCCCCCCccEEEecCCCCCCCcCCcCcccccCCCCCCcHHHHHHHHHcCCe
Q psy7560 222 NAMVDTRY-TEALEEAKAADQKIALEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGI 300 (507)
Q Consensus 222 na~~~~~~-~~al~~A~~~d~~~~~~~~~~~~pL~GiP~~vKD~~~v~G~~tt~Gs~~~~~~~~~~da~~V~~L~~aGAi 300 (507)
|+|+++.. |+++++|+++|++++++.. +||+||||+|||||||+|++||+||+.+. +++.+||++|+||+++|||
T Consensus 2 ~a~i~~~~~e~al~~A~~ld~~~~~~~~---~PL~GvP~aVKD~idvaG~pTTaGs~~~~-~~p~~DA~vV~rLr~AGAI 77 (561)
T TIGR02713 2 EAWISLLSEEDLLAQAAALDARDARPER---LPLYGVPFAVKDNIDVAGLPTTAACPAFA-YTPEEDATVVALLRAAGAI 77 (561)
T ss_pred cEEEEeCCHHHHHHHHHHHHHHHhcCCC---CCccCCeEEEEcccccCCCccCcCCHhHc-CCCCcCHHHHHHHHHCCCE
Confidence 67888754 7899999999998876643 89999999999999999999999999986 7889999999999999999
Q ss_pred EEEccccCCcC-CCCCCCCCCCCCCCCCCCCCCCCCCCchhHHhhhcCCCceeeeccCCCcccccccccCcceeecCCCC
Q psy7560 301 LLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGS 379 (507)
Q Consensus 301 i~GkTn~~e~~-~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVaag~~~~alGtDtgGSiR~PAa~~Gv~G~kPt~G~ 379 (507)
++||||||||+ +..+.|++||.|+||||++|++||||||||++||+|+++||+|||||||||+||+|||+||||||+|+
T Consensus 78 iiGKTN~~Efa~g~~g~n~~~G~t~NP~d~~~~~GGSSsGSAaAVAaG~v~~alGTDtgGSiRiPAa~cGlvGlKPT~G~ 157 (561)
T TIGR02713 78 VVGKTNLDQFATGLVGTRSPYGAVRNAFDPAYISGGSSSGSAVAVARGLVPFALGTDTAGSGRVPAALNNIVGLKPTKGL 157 (561)
T ss_pred EEEEeCchHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCCceEEeecCCCcchhhhHHhCceeEecCCCC
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCcceeccccCChhhHHHHHHHhcCCCCCCCCCCCccC-----CCCCcEEEEECCCCCCCCCCCCH
Q psy7560 380 VNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPAYNFDKSV-----DLAKLKVFYVEEPGDMKVSPMSK 454 (507)
Q Consensus 380 v~~~G~~p~~~~~~~~~~~~Gp~ar~v~D~~~~~~~l~~~~~~d~~~~~~~~-----~~~~lrig~~~~~g~~~~~~~~~ 454 (507)
+|..|++|.+. ++||+|||||||+|+++++++|.++|+.|+++.+.+. ..+++|||++..+. .....++
T Consensus 158 vs~~Gv~p~~~----slD~vG~~Arsv~D~~~~l~v~~g~d~~d~~s~~~p~~~~~~~~~~lrigv~~~~~--~~~~~~~ 231 (561)
T TIGR02713 158 VSTTGVVPACR----SLDCVSIFALTVADAEQVLRIAAAPDARDPYSRPLPAAALRRLPPPPRVGVPRAAQ--LEFFGDS 231 (561)
T ss_pred ccCCCcccccc----CCCeeechhCCHHHHHHHHHhhcCCCCcCccccCCCchhhcccCCCCEEEEECchh--cCCCCCH
Confidence 99999999998 9999999999999999999999999988877653321 13679999997432 1112488
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEcCCCCchH
Q psy7560 455 DMIQAIRKCVNALKVVSHSEPEDLSHIKQFR 485 (507)
Q Consensus 455 ~~~~~~~~~~~~L~~~~G~~v~~~~~~p~~~ 485 (507)
+++++++++++.|++. |++|++ +++|.+.
T Consensus 232 ~v~~a~~~a~~~L~~~-G~~v~~-v~~~~~~ 260 (561)
T TIGR02713 232 QAEAAFAAAVERLEAL-GVEVVE-IDFAPFL 260 (561)
T ss_pred HHHHHHHHHHHHHHHC-CCEEEE-ecchhHH
Confidence 9999999999999996 999999 9987643
No 28
>PRK07139 amidase; Provisional
Probab=100.00 E-value=5.4e-62 Score=518.31 Aligned_cols=249 Identities=22% Similarity=0.270 Sum_probs=221.2
Q ss_pred HHHHHHHHHHHHhCCCCeeEEecCcHHHHHHHHHHHHHHHccCCCCCCCCCCccEEEecCCCCCCCcCCcCcccccCCCC
Q psy7560 205 EVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKA 284 (507)
Q Consensus 205 ev~~~~l~ri~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~~~~~~pL~GiP~~vKD~~~v~G~~tt~Gs~~~~~~~~ 284 (507)
-+.++++++++. ..+||+++...+.. .. .+||+||||+|||+|+++|++||+||..+.++++
T Consensus 6 ~~~~~~~~~~~~--~~~~~~~~~~~~~~--------------~~--~gpL~GvPvavKD~~~v~G~~tt~Gs~~l~~~~~ 67 (439)
T PRK07139 6 GNFQKALEELKN--DKNNAVSYVFDEKN--------------NK--DGPLANCVFTIKDNFATSEGPTHASSKSLENFKP 67 (439)
T ss_pred hhHHHHHHHhhc--cccCeEEEEecccC--------------CC--CCCcCCcEEEEEcceecCCCccCcChHHHccCCC
Confidence 356677777765 56889988642221 12 4899999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHcCCeEEEccccCCcC-CCCCCCCCCCCCCCCCCCCCCCCCCCchhHHhhhcCCCceeeeccCCCcccc
Q psy7560 285 DADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRI 363 (507)
Q Consensus 285 ~~da~~V~~L~~aGAii~GkTn~~e~~-~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVaag~~~~alGtDtgGSiR~ 363 (507)
.+||++|+||++||||++||||||||+ +.++.|++||+|+||||++|+|||||||||++||++ +++|+|||||||||+
T Consensus 68 ~~dA~vV~rLr~AGAIilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGSAAaVAag-~~~alGtDtgGSIRi 146 (439)
T PRK07139 68 SYNATVVQKLINAGAKPVAKVHCDELGLGGTGLFSAFGLIKNPLDSSKLVGGSSSGSAATFNKN-ISFAIGSDTGDSVRL 146 (439)
T ss_pred CCchHHHHHHHHCCCEEEEeechhhHhcCCCCCCCCCCCcCCCCCCCCCCCCCchHHHHHHHCC-CCEEEEcCCCcchhh
Confidence 999999999999999999999999999 999999999999999999999999999999999997 799999999999999
Q ss_pred cccccCcceeecCCCCccCCCCCCCCCCCCCCcceeccccCChhhHHHHHHHhcCCCCCCCCCCCccC----CCCCcEEE
Q psy7560 364 PALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPAYNFDKSV----DLAKLKVF 439 (507)
Q Consensus 364 PAa~~Gv~G~kPt~G~v~~~G~~p~~~~~~~~~~~~Gp~ar~v~D~~~~~~~l~~~~~~d~~~~~~~~----~~~~lrig 439 (507)
||+||||||||||+|+||+.|++|+++ ++|++|||||+|+|+++++++|.++++.|+...+.+. ..+++|||
T Consensus 147 PAa~cGvvGlKPT~G~vs~~G~~p~~~----sld~~Gp~arsv~D~a~~~~vl~g~d~~d~~~~~~~~~~~~~~~~lrig 222 (439)
T PRK07139 147 PASFIGKVGFKPSYGAISRYGLFAYAS----SLDTVAYFTHNVNDAIILSKVLFGKDENDLTSVDVKINNVKKTKPKKVA 222 (439)
T ss_pred hHHHcCeEEEeCCCCCcCCCCcccCcc----cCCccccccCCHHHHHHHHHHHcCCCcCCccccccCcccccccCCCEEE
Confidence 999999999999999999999999887 8999999999999999999999999887776543221 24789999
Q ss_pred EECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCCc
Q psy7560 440 YVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIKQ 483 (507)
Q Consensus 440 ~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~G~~v~~~~~~p~ 483 (507)
+... ...++++++++++++++.|+++ |++|++ +++|.
T Consensus 223 ~~~~-----~~~~~~~v~~a~~~a~~~L~~~-G~~v~~-~~~~~ 259 (439)
T PRK07139 223 YLDC-----FKELEEYVAKKYKKLINILKSE-NIEVEK-IKIDE 259 (439)
T ss_pred EECc-----cccCCHHHHHHHHHHHHHHHHC-CCEEEE-eCCCh
Confidence 9743 2357999999999999999996 999999 88773
No 29
>KOG1212|consensus
Probab=100.00 E-value=1.4e-61 Score=511.11 Aligned_cols=323 Identities=36% Similarity=0.534 Sum_probs=291.9
Q ss_pred CCcccccccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCeeEEecCcHHHHHHHHHHHHHHHccCCCCCCCCCC
Q psy7560 177 LPPVKNKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLG 256 (507)
Q Consensus 177 ~~~~~~~~~~~s~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~~~~~~pL~G 256 (507)
+++..+.+..+|+.||+++|++|++|++|++++|++|+.+.|+.+||+++..+|.++.+|+..|..++.... ++||+|
T Consensus 45 ld~~~~~il~~~~~~L~~~L~~~e~~~~~vl~Ay~~Ra~~vn~~lNcV~~~i~e~~~~~a~~~d~~~~~~~~--k~PL~G 122 (560)
T KOG1212|consen 45 LDTTRNAILKLDATELAQALQSGELTSVEVLCAYCHRAIEVNQKLNCVVEFIFEAALQAAALDDEYTAPLYE--KPPLYG 122 (560)
T ss_pred cchHHHHHhhcCHHHHHHHHHhCcCcHHHHHHHHHHHHHHhccCcceeeeehhhHHHHHhhchhhhhchhcc--cCCcee
Confidence 333456799999999999999999999999999999999999999999999999999999888887653322 589999
Q ss_pred ccEEEecCCCCCCCcCCcCcccccCCCCCCcHHHHHHHHHcCCeEEEccccCCcC-CCCCCCCCCCCCCCCCCCCCCCCC
Q psy7560 257 VPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGA 335 (507)
Q Consensus 257 iP~~vKD~~~v~G~~tt~Gs~~~~~~~~~~da~~V~~L~~aGAii~GkTn~~e~~-~~~~~n~~~G~~~NP~~~~~~~GG 335 (507)
|||+|||+|.++|+.+|.|.....+.++++|+.+|+.|+++|||++.+||+||.. +..+.|+.||+|.||||.+|+|||
T Consensus 123 vP~SvKe~~~vkg~d~T~G~~~~~~~~a~~ds~~V~~lk~~GaIpf~~TnvPq~~ls~~tsn~v~G~T~NP~d~~rt~GG 202 (560)
T KOG1212|consen 123 VPFSVKESISVKGYDSTAGLLARTNQPATTDSVIVEFLKKLGAIPFVLTNVPQSLLSYETSNPVYGTTKNPYDLSRTPGG 202 (560)
T ss_pred cceehhhheeecCccccchhhhccCCCCccchHHHHHHHHcCCCceeecCCchhhhhhhhcCCCCCCCCChhhccCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred CCchhHHhhhcCCCceeeeccCCCcccccccccCcceeecCCCCccCCCCCCCCCCCCCCcceeccccCChhhHHHHHHH
Q psy7560 336 SSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKC 415 (507)
Q Consensus 336 SSgGsaaaVaag~~~~alGtDtgGSiR~PAa~~Gv~G~kPt~G~v~~~G~~p~~~~~~~~~~~~Gp~ar~v~D~~~~~~~ 415 (507)
||||+|+++|+|.++||||||+|||||+||+|||++|+|||.+|+|..|..+..++.+..+.++|||+|+++|+.++++.
T Consensus 203 SSGGEaALigaggS~lGiGsDigGSiRiPa~f~Gl~GlKPT~~r~~~~G~~~~~~g~~~~~~~~GPm~r~v~dl~~~L~~ 282 (560)
T KOG1212|consen 203 SSGGEAALLGAGGSLLGIGSDIGGSIRIPAAFCGLFGLKPTPGRVSVKGHHPSVPGRETIMLVIGPMTRDVEDLVLLLRL 282 (560)
T ss_pred CchHHHHHHhCCcceeccccccCCceeechhhccccccCCCCCeeeecCcCCCCCcccccccccCcccccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998777777788999999999999999999
Q ss_pred hcCCCC---CCCCCCCcc------CCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCCchHH
Q psy7560 416 LILPDK---LPAYNFDKS------VDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIKQFRL 486 (507)
Q Consensus 416 l~~~~~---~d~~~~~~~------~~~~~lrig~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~G~~v~~~~~~p~~~~ 486 (507)
+.+... .|+...+.+ ....+++||+..+|| +.++.|.+++++.++++.|++. |+++++ +++|.++.
T Consensus 283 ~i~~~~~~~~~p~~~p~~~~~~~y~~~~~~~ig~~~~dg---~~~~~pa~~RAv~~~~~~l~~~-g~~~~~-f~~~~~~~ 357 (560)
T KOG1212|consen 283 MIGDSGPKLLDPYPVPVKFMEVFYKSSDKLVIGYYVDDG---FFDPSPAMQRAVQETIDLLEKA-GHEVVP-FDLPDLKH 357 (560)
T ss_pred hcCCccccccCCCCCCchhhhhhhhccCCccceEEecCC---CCCcCHHHHHHHHHHHHHHHhc-CcceeE-ecCCcchH
Confidence 999652 222222211 124689999998777 6688999999999999999996 999999 99999999
Q ss_pred HHHHHHHHHhhcCchhhhhcC
Q psy7560 487 GYDVWRYWVSKEKDDFFSDHY 507 (507)
Q Consensus 487 ~~~~~~~~~~~d~~~~~~~~y 507 (507)
..++|.. ...+..+++...|
T Consensus 358 ~~~~~~~-~~~~~~~~~~~~~ 377 (560)
T KOG1212|consen 358 VADMFFR-VMPDDGDYISEMY 377 (560)
T ss_pred HHHHHHH-HcccccchhhHHh
Confidence 9999988 7777777776554
No 30
>PRK08310 amidase; Provisional
Probab=100.00 E-value=4.9e-59 Score=489.76 Aligned_cols=214 Identities=24% Similarity=0.320 Sum_probs=195.4
Q ss_pred CCCCCCccEEEecCCCCCCCcCCcCccccc--CCCCCCcHHHHHHHHHcCCeEEEccccCCcC-CCCCCCCCCCCCCCCC
Q psy7560 251 DKPYLGVPFTSKESTACKGLSNTLGLLARK--GKKADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPY 327 (507)
Q Consensus 251 ~~pL~GiP~~vKD~~~v~G~~tt~Gs~~~~--~~~~~~da~~V~~L~~aGAii~GkTn~~e~~-~~~~~n~~~G~~~NP~ 327 (507)
.+||+||||+|||+|+++|++||+||..+. +.++.+||++|+||+++|||++||||||||+ +.++.|+.||.|+|||
T Consensus 23 ~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~~~~~~~~dA~vV~~L~~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~ 102 (395)
T PRK08310 23 SGPLAGLRFAVKDVFDVAGYVTGCGNPDWLAESPVATRTAPAVEKLLAAGARFVGKTQTDELAFSLNGQNAHYGTPVNPA 102 (395)
T ss_pred CCCcCCCeEEEeeccccCCCccCCCCHHHHhcCCCCCCCHHHHHHHHHCCCEEEEeccchHHhcCCCCCCCCCCCCCCCC
Confidence 589999999999999999999999999884 4677899999999999999999999999999 9999999999999999
Q ss_pred CCCCCCCCCCchhHHhhhcCCCceeeeccCCCcccccccccCcceeecCCCCccCCCCCCCCCCCCCCcceeccccCChh
Q psy7560 328 NLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAE 407 (507)
Q Consensus 328 ~~~~~~GGSSgGsaaaVaag~~~~alGtDtgGSiR~PAa~~Gv~G~kPt~G~v~~~G~~p~~~~~~~~~~~~Gp~ar~v~ 407 (507)
|++++|||||||||++||+|++++|+|||||||||+||+||||||||||+|++|+.|+.|+++ ++|++|||||+|+
T Consensus 103 ~~~~~pGGSSgGsAaaVAag~~~~aiGtDtGGSIRiPAa~cGv~G~KPT~Grvs~~G~~~~~~----~~d~~Gp~arsv~ 178 (395)
T PRK08310 103 APDRVPGGSSSGSAAAVAGGLADFALGTDTGGSVRAPASFCGLYGLRPTHGRISLEGVMPLAP----SFDTVGWFARDIA 178 (395)
T ss_pred CCCCCCCCCchHHHHHHHcCCcceEEecCCCCCeecchHhcCeeEeecCCCcccCCCCccccc----CCCeeeeeeCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999887 8999999999999
Q ss_pred hHHHHHHHhcCCCCCCCCCCCccCCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCC
Q psy7560 408 DLLPYSKCLILPDKLPAYNFDKSVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIK 482 (507)
Q Consensus 408 D~~~~~~~l~~~~~~d~~~~~~~~~~~~lrig~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~G~~v~~~~~~p 482 (507)
|+++++++|.+.++.++ ...+||++..+ ....++++++++++++++.|+++ +.++++ ++.+
T Consensus 179 D~~~~~~~l~g~~~~~~--------~~~~ri~~~~~----~~~~~~~~v~~a~~~a~~~L~~~-~g~vv~-~~~~ 239 (395)
T PRK08310 179 LLERVGEVLLGDDAQEF--------PLTQRLLIPVD----LFALLDPAVRAALEAALARLRPH-LGPAKP-ASVP 239 (395)
T ss_pred HHHHHHHHHcCCCcccC--------CcCceEEEecc----ccccCCHHHHHHHHHHHHHHHHh-CCceee-ecCC
Confidence 99999999999876332 12468988754 13468999999999999999985 447887 7654
No 31
>KOG1211|consensus
Probab=100.00 E-value=4.4e-59 Score=487.98 Aligned_cols=282 Identities=27% Similarity=0.395 Sum_probs=259.1
Q ss_pred HHcCCCCHHHHHHHHHHHHHHhCCCCeeEEecCcHHHHHHHHHHHHHHHccCCCCCCCCCCccEEEecCCCCCCCcC-Cc
Q psy7560 196 IRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSKESTACKGLSN-TL 274 (507)
Q Consensus 196 l~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~~~~~~pL~GiP~~vKD~~~v~G~~t-t~ 274 (507)
+.+|.+++.++++.+++++...++..+.+...+ ++++.+|++.|.+++.+.. .+||+|+||+|||||+++|++| ||
T Consensus 27 l~~~~l~~~~~ie~~l~~~~~~~~~~~~i~~~~-~~~~~~a~~~~~~~~~~~~--~~~L~Gv~i~IKDnf~tk~~~t~t~ 103 (506)
T KOG1211|consen 27 LSSGLLTSKRIIESYLERINKWKPLNAKITVIN-EEALKQAEEVTRRRKNGME--KGPLQGVPIAIKDNFDTKDKPTTTA 103 (506)
T ss_pred hcccccchHHHHHHHHHHHhhcccccceeeecc-HHHHHHhhhccccccCCCc--CCCcCCceEEEeeceecCCccCCch
Confidence 899999999999999999999998888887765 8899999999998877766 5999999999999999999999 88
Q ss_pred CcccccCCCCCCcHHHHHHHHHcCCeEEEccccCCcC-CCCCCCCCCCCCCCCCCCCCCCCCCCchhHHhhhcCCCceee
Q psy7560 275 GLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGL 353 (507)
Q Consensus 275 Gs~~~~~~~~~~da~~V~~L~~aGAii~GkTn~~e~~-~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVaag~~~~al 353 (507)
+|..+.++.++.||++|++|+++|||++|||||+||+ +..+.+.+||+++|||++.+.+||||||||++||+++|+||+
T Consensus 104 ~S~~l~~~~~p~dAtVV~~L~~aGaiilGKTnmdEfamg~~~~~s~~G~t~np~~~~~v~GGSS~GSA~aVaa~l~~~al 183 (506)
T KOG1211|consen 104 ASWMLEHYNPPKDATVVKKLREAGAIILGKTNMDEFAMGSSGENSHYGTTRNPLSLWRVPGGSSSGSAAAVAAGLCDFAL 183 (506)
T ss_pred hhhhhccCCCccccHHHHHHhhcCceEEccccHHHHhhccccccccCCccCCCCcccccCCCCcchhHHHHHhccchhhc
Confidence 8899999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred eccCCCcccccccccCcceeecCCCCccCCCCCCCCCCCCCCcceeccccCChhhHHHHHHHhcCCCCCCCCCCCccC--
Q psy7560 354 GTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPAYNFDKSV-- 431 (507)
Q Consensus 354 GtDtgGSiR~PAa~~Gv~G~kPt~G~v~~~G~~p~~~~~~~~~~~~Gp~ar~v~D~~~~~~~l~~~~~~d~~~~~~~~-- 431 (507)
|||||||+|+||++|||+|||||+|++|+.|++|++. ++|++|++||+|.|+..+++++.+.|..|..+...+.
T Consensus 184 GtDTgGSvR~PAa~~gvvG~KPT~G~~Sr~Gvip~~~----SlD~vGi~a~tv~D~~~v~~~~~g~d~~d~~t~~~p~~~ 259 (506)
T KOG1211|consen 184 GTDTGGSVRVPAAYCGVVGFKPTYGRVSRFGVIPLSN----SLDTVGIFARTVYDAVEVLGAIVGIDELDSTTLAQPAPF 259 (506)
T ss_pred cccCCCCccCcHHhcCccccccCcceecccccchhhh----cccccchhhcccchhHHHhhhhcCCCccCcccccCCccc
Confidence 9999999999999999999999999999999999998 9999999999999999999999999988876543332
Q ss_pred ----------CCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCCchHHHHH
Q psy7560 432 ----------DLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIKQFRLGYD 489 (507)
Q Consensus 432 ----------~~~~lrig~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~G~~v~~~~~~p~~~~~~~ 489 (507)
++.++|+|++.+. .....+.++.+.+++..+.|+.. |..+.+ +.+|.......
T Consensus 260 ~~~~~~~~~~~l~~~r~GIp~~~---~~~~~~~~v~~~~~~~~~~l~~~-~~~~~~-~~lp~~~~~~~ 322 (506)
T KOG1211|consen 260 PIVLELIGSMDLSGLRIGIPKER---LVQGLSSGVLSLWEELADLLGSL-GAKVNE-VSLPTTINGLC 322 (506)
T ss_pred ccchhhcccccccccccCceeec---ccccccHHHHHHHHHHHHHhhcc-ccccee-eecchhhhccc
Confidence 4678999999763 35567789999999999999995 999999 98887654443
No 32
>PLN02722 indole-3-acetamide amidohydrolase
Probab=100.00 E-value=3.8e-58 Score=485.69 Aligned_cols=217 Identities=25% Similarity=0.327 Sum_probs=196.2
Q ss_pred CCCCCCccEEEecCCCCCCCcCCcCcccccC-C-CCCCcHHHHHHHHHcCCeEEEccccCCcC-CCCCCCCCCCCCCCCC
Q psy7560 251 DKPYLGVPFTSKESTACKGLSNTLGLLARKG-K-KADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPY 327 (507)
Q Consensus 251 ~~pL~GiP~~vKD~~~v~G~~tt~Gs~~~~~-~-~~~~da~~V~~L~~aGAii~GkTn~~e~~-~~~~~n~~~G~~~NP~ 327 (507)
.+||+||||+|||+|+|+|++||+||+.+.+ + ++.+||++|+||+++|||++||||||||+ +..+.|++||+|+|||
T Consensus 24 ~gpL~GvPiaVKD~~~v~G~~Tt~GS~~~~~~~~~~~~dA~vV~rL~~AGAiilGKTn~~Efa~~~~g~n~~~G~t~NP~ 103 (422)
T PLN02722 24 DLPLHGLTFAVKDIFDVEGYVTGFGNPDWARTHSAATSTAPAVLAVLRGGATCVGKTIMDEMAYSINGENAHYGTPTNPI 103 (422)
T ss_pred CCCCCCCeEEEEcccccCCCccCCCCHHHHhcCCCCCCChHHHHHHHHCCCEEEEEechhhHhhCCCCCCCCCCCCCCCC
Confidence 5899999999999999999999999998864 4 46789999999999999999999999999 9999999999999999
Q ss_pred CCCCCCCCCCchhHHhhhcCCCceeeeccCCCcccccccccCcceeecCCCCccCCCCCCCCCCCCCCcceeccccCChh
Q psy7560 328 NLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAE 407 (507)
Q Consensus 328 ~~~~~~GGSSgGsaaaVaag~~~~alGtDtgGSiR~PAa~~Gv~G~kPt~G~v~~~G~~p~~~~~~~~~~~~Gp~ar~v~ 407 (507)
|++|+|||||||||++||+|++++|+|||||||||+||+||||||||||+|+||+.|++|+++ ++|++|||||+|+
T Consensus 104 ~~~r~pGGSSsGSAaAVAaG~~p~AlGtDtgGSIRiPAa~cGvvG~KPT~G~vp~~G~~pla~----sld~~G~~ar~v~ 179 (422)
T PLN02722 104 APDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHGAVSTVGVIPMAQ----SFDTVGWFARDPV 179 (422)
T ss_pred CCCCCCCcCcHHHHHHHHcCCCceEeecCCCcccccChhHcceEEEecCCCccCCCCCCcccC----CCCcccceeCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999987 9999999999999
Q ss_pred hHHHHHHHhcCCCCCCCCCCCccCCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCC
Q psy7560 408 DLLPYSKCLILPDKLPAYNFDKSVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIK 482 (507)
Q Consensus 408 D~~~~~~~l~~~~~~d~~~~~~~~~~~~lrig~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~G~~v~~~~~~p 482 (507)
|+++++++|.+.++.|+ ...+||++..+.. ......++++.++++++++.|++. |+++++ ++++
T Consensus 180 D~a~~~~~l~g~~~~d~--------~~~~ri~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~-g~~v~~-~~~~ 243 (422)
T PLN02722 180 ILKRVGHVLLQQPDVNP--------IKPSQIIIAEDCF-QLSSIPHDRLVQVLVKSVEKLFGG-GDIVKH-VNLG 243 (422)
T ss_pred HHHHHHHHHcCCCCCCC--------cCCceEEechhhh-hhcccccHHHHHHHHHHHHHHhcC-CCeeee-cchh
Confidence 99999999999876443 2347999886411 001235689999999999999996 999988 7664
No 33
>PRK06061 amidase; Provisional
Probab=99.73 E-value=8.2e-18 Score=181.69 Aligned_cols=112 Identities=17% Similarity=0.191 Sum_probs=96.0
Q ss_pred HHHHhhccCc-hHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCcccccc---------CccccccccccccCCC
Q psy7560 4 ILCSLCRMVP-SDQWAKEHTEILKTKLTELLGDNGVLVFPAAPESAPYHYATFFR---------PYNFTYWALFNILDFP 73 (507)
Q Consensus 4 ~~~~~~~~~~-~~~~a~~~r~~~~~~~~~~f~~~Dvll~Pt~~~~a~~~~~~~~~---------~~~~~~t~~~Nl~G~P 73 (507)
.+..+..++. +|.++++.|.+++++|.++|+++|+||+||+|.+||+++..... .....||.+||++|+|
T Consensus 349 ~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~p~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~P 428 (483)
T PRK06061 349 NARMGRLLSQAILRLARAAEAAAQRRVGSIFDIVDVVLAPTTAQPPPRVGAFDRLGGWATDRAMIAACPYTWPWNVLGWP 428 (483)
T ss_pred HHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCCCCCCCCcccccccccchhhhhhhhcccccccccccCCC
Confidence 3445556666 89999999999999999999999999999999999998742100 1112489999999999
Q ss_pred eEEeccCcCCCCCceeEEEEcCCCCcHHHHHHHHHHHhcccc
Q psy7560 74 VTNVPVGLDGKGLPLGDRVFFSTAGTVTGVRLDSIPEQARRF 115 (507)
Q Consensus 74 aisvP~g~~~~GLPvGvQlvg~~~~D~~lL~~a~~~E~~~~~ 115 (507)
++|||+|++.+|||+||||+|++++|..||++|++||+..+|
T Consensus 429 aisvP~g~~~~GlPvGlQivg~~~~D~~LL~~A~~le~~~~~ 470 (483)
T PRK06061 429 SINVPAGFTSDGLPIGAQLMGPANSEPLLISLAAQLEAVSGW 470 (483)
T ss_pred eEEEecCcCCCCCCeeeEEECCCCCHHHHHHHHHHHHhhcCc
Confidence 999999998899999999999999999999999999998764
No 34
>PRK06169 putative amidase; Provisional
Probab=99.73 E-value=1.1e-17 Score=180.01 Aligned_cols=113 Identities=19% Similarity=0.160 Sum_probs=97.0
Q ss_pred HHHHHhhccCc-hHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCcccccc-------CccccccccccccCCCe
Q psy7560 3 KILCSLCRMVP-SDQWAKEHTEILKTKLTELLGDNGVLVFPAAPESAPYHYATFFR-------PYNFTYWALFNILDFPV 74 (507)
Q Consensus 3 ~~~~~~~~~~~-~~~~a~~~r~~~~~~~~~~f~~~Dvll~Pt~~~~a~~~~~~~~~-------~~~~~~t~~~Nl~G~Pa 74 (507)
.++..+..++. +|.++++.|..++++|.++|+++|+||+||+|.+||+++..... .....||.+||++|+|+
T Consensus 338 ~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~Pa 417 (466)
T PRK06169 338 RIAERGATYSASDYLDATAVRAALGARMGAFHERYDLLLTPTLPIPAFEAGHDVPPGSGLTDWTQWTPFTYPFNLTQQPA 417 (466)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCCCCccCCCccchhhhhhhhcccccccccCCCe
Confidence 34555566666 89999999999999999999999999999999999988642110 01124899999999999
Q ss_pred EEeccCcCCCCCceeEEEEcCCCCcHHHHHHHHHHHhcccc
Q psy7560 75 TNVPVGLDGKGLPLGDRVFFSTAGTVTGVRLDSIPEQARRF 115 (507)
Q Consensus 75 isvP~g~~~~GLPvGvQlvg~~~~D~~lL~~a~~~E~~~~~ 115 (507)
+|||+|++.+|||+||||+|++++|..||++|++||+..+|
T Consensus 418 isvP~g~~~~GlPvGlQlvg~~~~d~~lL~~a~~le~~~~~ 458 (466)
T PRK06169 418 ASVPCGFTAAGLPVGLQIVGPRHSDDLVLRVARAYEQALPW 458 (466)
T ss_pred EEEecCcCCCCCceEEEEecCCCcHHHHHHHHHHHHhhcCc
Confidence 99999998899999999999999999999999999998764
No 35
>PRK07042 amidase; Provisional
Probab=99.73 E-value=1.1e-17 Score=179.87 Aligned_cols=112 Identities=15% Similarity=0.122 Sum_probs=95.5
Q ss_pred HHHHhhccCc-hHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCcccc------ccCccccccccccccCCCeEE
Q psy7560 4 ILCSLCRMVP-SDQWAKEHTEILKTKLTELLGDNGVLVFPAAPESAPYHYATF------FRPYNFTYWALFNILDFPVTN 76 (507)
Q Consensus 4 ~~~~~~~~~~-~~~~a~~~r~~~~~~~~~~f~~~Dvll~Pt~~~~a~~~~~~~------~~~~~~~~t~~~Nl~G~Pais 76 (507)
++..+..++. +|.+++..|.++++.|.++|+++|+||+||+|.+||+++... .......||.+||++|+|++|
T Consensus 336 ~~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~Pais 415 (464)
T PRK07042 336 WAEGGADLSGVEAVRGFNQTFAMRAAAARLFAEFDYVLSPVAPVPAFPAEWASPTNDPARPFEHIAFTVPWNMSEQPAAS 415 (464)
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCCCCCCCCcccccccccchhhhcccccccceeccCCCeEE
Confidence 3444555666 888999999999999999999999999999999999886311 111223589999999999999
Q ss_pred eccCcCCCCCceeEEEEcCCCCcHHHHHHHHHHHhcccc
Q psy7560 77 VPVGLDGKGLPLGDRVFFSTAGTVTGVRLDSIPEQARRF 115 (507)
Q Consensus 77 vP~g~~~~GLPvGvQlvg~~~~D~~lL~~a~~~E~~~~~ 115 (507)
||+|++.+|||+||||+|++++|..||++|++||+..+|
T Consensus 416 vP~g~~~~GlPvGlQlvg~~~~D~~lL~~a~~le~~~~~ 454 (464)
T PRK07042 416 INCGFTRDGLPIGLQIVGPRFDDLGVLRLAKAFEGWRGP 454 (464)
T ss_pred eecCcCCCCCCeEEEEecCCCcHHHHHHHHHHHHHhccc
Confidence 999998899999999999999999999999999998763
No 36
>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=1.1e-17 Score=179.56 Aligned_cols=113 Identities=20% Similarity=0.227 Sum_probs=96.2
Q ss_pred HHHHHhhccCc-hHHHHHHHHH---HHHHHHHHHhcCCCEEEeCCCCCCCCCCcc-c--c-c---cCccccccccccccC
Q psy7560 3 KILCSLCRMVP-SDQWAKEHTE---ILKTKLTELLGDNGVLVFPAAPESAPYHYA-T--F-F---RPYNFTYWALFNILD 71 (507)
Q Consensus 3 ~~~~~~~~~~~-~~~~a~~~r~---~~~~~~~~~f~~~Dvll~Pt~~~~a~~~~~-~--~-~---~~~~~~~t~~~Nl~G 71 (507)
+++..+...+. +|..+...|. .+++++.++|+++|+||+||+|.+||++++ . . . .+....||.++|++|
T Consensus 346 ~ri~~G~~~~~~~~~~a~~~~~~~~~i~~~~~~~f~~~D~ll~Pt~~~~a~~ig~~~~~~~~~~~~~~~~~~t~~~Nl~G 425 (475)
T COG0154 346 RRIMLGTYLLSAGYYDAYYRRAQKTLIRRAFDKLFEEVDVLLTPTTPTPAPKIGESESDGDDPLEMYLLDVFTVPANLAG 425 (475)
T ss_pred HHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEeCCCCCCCcccccccccccCHHHHhhhccccccccccC
Confidence 45556666666 7888887774 459999999999999999999999999986 1 1 1 122236899999999
Q ss_pred CCeEEeccCcCCCCCceeEEEEcCCCCcHHHHHHHHHHHhcccc
Q psy7560 72 FPVTNVPVGLDGKGLPLGDRVFFSTAGTVTGVRLDSIPEQARRF 115 (507)
Q Consensus 72 ~PaisvP~g~~~~GLPvGvQlvg~~~~D~~lL~~a~~~E~~~~~ 115 (507)
+|++|||+|++.+||||||||+|++++|.+||++|++||++.+|
T Consensus 426 ~PaisvP~g~~~~GlPvGlqlig~~~~d~~LL~~a~~~E~~~~~ 469 (475)
T COG0154 426 LPAISVPAGFTADGLPVGLQLIGPAFDDATLLRLAAALEQALGW 469 (475)
T ss_pred CCeEEeccCCCCCCCCeeEEEecCCCCHHHHHHHHHHHHHhhCC
Confidence 99999999998889999999999999999999999999999885
No 37
>PRK12470 amidase; Provisional
Probab=99.72 E-value=2.3e-17 Score=177.23 Aligned_cols=112 Identities=21% Similarity=0.251 Sum_probs=91.3
Q ss_pred HHHHhhccCc-hHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCcccccc---------CccccccccccccCCC
Q psy7560 4 ILCSLCRMVP-SDQWAKEHTEILKTKLTELLGDNGVLVFPAAPESAPYHYATFFR---------PYNFTYWALFNILDFP 73 (507)
Q Consensus 4 ~~~~~~~~~~-~~~~a~~~r~~~~~~~~~~f~~~Dvll~Pt~~~~a~~~~~~~~~---------~~~~~~t~~~Nl~G~P 73 (507)
.+..+..++. +|..+...+.++++.|.++|+++|+||+||+|.+||+++..... .....||.+||++|+|
T Consensus 333 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~p~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~P 412 (462)
T PRK12470 333 IARLGSFFSDRRMAALRAAEVVLSARIQSIFDDVDVVVTPGTATGPSRIGAYQRRGAVSTLLLVVQRVPYFQVWNLTGQP 412 (462)
T ss_pred HHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCCCCCCCCCCccCCCcchhhhhhhhhccCcCccchhcCCC
Confidence 4445555555 66644444558999999999999999999999999988642110 1113479999999999
Q ss_pred eEEeccCcCCCCCceeEEEEcCCCCcHHHHHHHHHHHhcccc
Q psy7560 74 VTNVPVGLDGKGLPLGDRVFFSTAGTVTGVRLDSIPEQARRF 115 (507)
Q Consensus 74 aisvP~g~~~~GLPvGvQlvg~~~~D~~lL~~a~~~E~~~~~ 115 (507)
++|||+|++.+|||+||||+|++++|..||++|++||+..+|
T Consensus 413 aisvP~g~~~~GlPvGlqlvg~~~~D~~LL~~A~~le~~~~~ 454 (462)
T PRK12470 413 AAVVPWDFDGDGLPMSVQLVGRPYDEATLLALAAQIESARPW 454 (462)
T ss_pred eEEEecCcCCCCCceEEEEECCCCcHHHHHHHHHHHHccCCc
Confidence 999999998899999999999999999999999999998775
No 38
>PRK06529 amidase; Provisional
Probab=99.72 E-value=3e-17 Score=177.43 Aligned_cols=107 Identities=16% Similarity=0.084 Sum_probs=92.4
Q ss_pred HHhhccCc-hHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCcccccc---------------------------
Q psy7560 6 CSLCRMVP-SDQWAKEHTEILKTKLTELLGDNGVLVFPAAPESAPYHYATFFR--------------------------- 57 (507)
Q Consensus 6 ~~~~~~~~-~~~~a~~~r~~~~~~~~~~f~~~Dvll~Pt~~~~a~~~~~~~~~--------------------------- 57 (507)
..+..++. +|.++++.|..++++|.++|+++|+||+||+|.+||+++.....
T Consensus 341 ~~g~~~~~~~~~~a~~~r~~~~~~~~~~f~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (482)
T PRK06529 341 QSGQDIPAKRYSQVLQKWDTYSATMASFHETYDLLLTFTTNTPAPKHGQLDPDSKLMANLAQAEIFSSEEQQNLVETMFE 420 (482)
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCEEEcCCCCCCCCCCCccCcccchhhhccccccccchhhhhhhhhhhh
Confidence 34445566 89999999999999999999999999999999999988641100
Q ss_pred --CccccccccccccCCCeEEeccCcCCCCCceeEEEEcCCCCcHHHHHHHHHHHhc
Q psy7560 58 --PYNFTYWALFNILDFPVTNVPVGLDGKGLPLGDRVFFSTAGTVTGVRLDSIPEQA 112 (507)
Q Consensus 58 --~~~~~~t~~~Nl~G~PaisvP~g~~~~GLPvGvQlvg~~~~D~~lL~~a~~~E~~ 112 (507)
.....||.+||++|+|++|||+|++.+||||||||+|++++|..||++|++||++
T Consensus 421 ~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~D~~lL~~a~~le~~ 477 (482)
T PRK06529 421 KSLAITPYTALANLTGQPAISLPTYETKEGLPMGVQLIAAKGREDLLLGIAEQFEAA 477 (482)
T ss_pred hhhhcccccccccccCCCeEEeecCcCCCCCceeEEEecCCCcHHHHHHHHHHHHhc
Confidence 0112489999999999999999998899999999999999999999999999987
No 39
>PRK07486 amidase; Provisional
Probab=99.71 E-value=2.6e-17 Score=178.00 Aligned_cols=112 Identities=17% Similarity=0.135 Sum_probs=94.4
Q ss_pred HHHHhhccCc-hHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCcccc-----c----cC-ccccccccccccCC
Q psy7560 4 ILCSLCRMVP-SDQWAKEHTEILKTKLTELLGDNGVLVFPAAPESAPYHYATF-----F----RP-YNFTYWALFNILDF 72 (507)
Q Consensus 4 ~~~~~~~~~~-~~~~a~~~r~~~~~~~~~~f~~~Dvll~Pt~~~~a~~~~~~~-----~----~~-~~~~~t~~~Nl~G~ 72 (507)
.+..+..++. +|.++++.|.+++++|.++|+++|+||+||+|.+||+++... . .. ....+|.+||++|+
T Consensus 351 ~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~ 430 (484)
T PRK07486 351 EIEGGLALTAAQVYEASVIRSAWYQALLRLFERYDFLALPTAQVFPFDAEWRWPRAIAGRAMDTYHRWMEVVVPATLAGL 430 (484)
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCCCCCCCccccccccccccchhhhhhhhhcccccccccCC
Confidence 3444555666 899999999999999999999999999999999998775310 0 01 11236789999999
Q ss_pred CeEEeccCcCCCCCceeEEEEcCCCCcHHHHHHHHHHHhcccc
Q psy7560 73 PVTNVPVGLDGKGLPLGDRVFFSTAGTVTGVRLDSIPEQARRF 115 (507)
Q Consensus 73 PaisvP~g~~~~GLPvGvQlvg~~~~D~~lL~~a~~~E~~~~~ 115 (507)
|++|||+|++.+|||+||||+|++++|..||++|++||+..+|
T Consensus 431 PaisvP~g~~~~glPvGlQlvg~~~~D~~lL~~a~~le~~~~~ 473 (484)
T PRK07486 431 PAISVPVGFNAAGLPMGMQIIGPPRADLAVLQLAHAYEQATDW 473 (484)
T ss_pred CeEEEECCcCCCCCceEEEEECCCCCHHHHHHHHHHHHhccCc
Confidence 9999999998899999999999999999999999999998764
No 40
>PRK07235 amidase; Provisional
Probab=99.71 E-value=2.9e-17 Score=178.00 Aligned_cols=99 Identities=24% Similarity=0.225 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCccccc---c-----CccccccccccccCCCeEEeccCcCCCC
Q psy7560 14 SDQWAKEHTEILKTKLTELLGDNGVLVFPAAPESAPYHYATFF---R-----PYNFTYWALFNILDFPVTNVPVGLDGKG 85 (507)
Q Consensus 14 ~~~~a~~~r~~~~~~~~~~f~~~Dvll~Pt~~~~a~~~~~~~~---~-----~~~~~~t~~~Nl~G~PaisvP~g~~~~G 85 (507)
+|.++++.|.+++++|.++|+++|+||+||+|.+||+++.... . .....||.+||++|+|++|||+|+. +|
T Consensus 395 ~y~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PalsvP~g~~-~G 473 (502)
T PRK07235 395 YYAKARNLARRLRAAYDEALRKYDLLVMPTTPMVATPLPAPDASREEYVSRALEMIANTAPFDVTGHPAMSVPCGLV-DG 473 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCEEeeCCCCCCCCCcccccCchHHHHHHHHhhhccCccchhhCCCeEEEECCcC-CC
Confidence 7899999999999999999999999999999999999864211 0 0122479999999999999999995 89
Q ss_pred CceeEEEEcCCCCcHHHHHHHHHHHhcc
Q psy7560 86 LPLGDRVFFSTAGTVTGVRLDSIPEQAR 113 (507)
Q Consensus 86 LPvGvQlvg~~~~D~~lL~~a~~~E~~~ 113 (507)
|||||||||++++|.+||++|++||+..
T Consensus 474 lPvGlQlvg~~~~D~~lL~~A~~~E~~~ 501 (502)
T PRK07235 474 LPVGLMLVGRHFDEATILRAAAAFEASG 501 (502)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999864
No 41
>PRK06170 amidase; Provisional
Probab=99.71 E-value=3.2e-17 Score=177.53 Aligned_cols=106 Identities=21% Similarity=0.289 Sum_probs=91.3
Q ss_pred hccCc-hHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCccccc------c--------CccccccccccccCCC
Q psy7560 9 CRMVP-SDQWAKEHTEILKTKLTELLGDNGVLVFPAAPESAPYHYATFF------R--------PYNFTYWALFNILDFP 73 (507)
Q Consensus 9 ~~~~~-~~~~a~~~r~~~~~~~~~~f~~~Dvll~Pt~~~~a~~~~~~~~------~--------~~~~~~t~~~Nl~G~P 73 (507)
..++. +|.++++.|..++++|.++|+++|+||+||+|.+||+++.... . ...+.||.+||++|+|
T Consensus 363 ~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~P 442 (490)
T PRK06170 363 AVLSHRDWLFADAAREELRAAWRRFFAEFDVVLCPVTPTPAFPHDHAPDPLERRIDIDGVSYPYWDQLVWAGLATLPGLP 442 (490)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCCCCccccccccccccCCcccchhhhhhhcceecccCCC
Confidence 33455 8999999999999999999999999999999999999864210 0 0112478999999999
Q ss_pred eEEeccCcCCCCCceeEEEEcCCCCcHHHHHHHHHHHhccc
Q psy7560 74 VTNVPVGLDGKGLPLGDRVFFSTAGTVTGVRLDSIPEQARR 114 (507)
Q Consensus 74 aisvP~g~~~~GLPvGvQlvg~~~~D~~lL~~a~~~E~~~~ 114 (507)
++|||+|++.+|||+||||+|++++|.+||++|++||+..+
T Consensus 443 aisvP~g~~~~GlPvGlQlig~~~~D~~LL~~a~~lE~~~~ 483 (490)
T PRK06170 443 ATAIPIGLSATGLPVGVQIVGPALEDRTPLRLAELLEEEFG 483 (490)
T ss_pred eEEEECCcCCCCCceeEEEecCCCCHHHHHHHHHHHHHhcC
Confidence 99999999889999999999999999999999999999743
No 42
>PRK06102 hypothetical protein; Provisional
Probab=99.70 E-value=6.1e-17 Score=173.64 Aligned_cols=109 Identities=18% Similarity=0.085 Sum_probs=92.7
Q ss_pred HHHHhhccCc-hHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCcccc--c------cCccccccccccccCCCe
Q psy7560 4 ILCSLCRMVP-SDQWAKEHTEILKTKLTELLGDNGVLVFPAAPESAPYHYATF--F------RPYNFTYWALFNILDFPV 74 (507)
Q Consensus 4 ~~~~~~~~~~-~~~~a~~~r~~~~~~~~~~f~~~Dvll~Pt~~~~a~~~~~~~--~------~~~~~~~t~~~Nl~G~Pa 74 (507)
++..+..++. +|.++++.|.+++++|.++|+ +|+||+||+|.+||+++... . ......||.+||++|+|+
T Consensus 332 ~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~-~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~t~~~nl~g~Pa 410 (452)
T PRK06102 332 RTRLGRKITASDYIALLEARERLIAQVTRELG-GALLATPTVAHVAPPLAPLEADDDLFFATNLKTLRNTMPGNFLDMCG 410 (452)
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHHHHHHc-CCEEEeCCCCCCCCCccccccCchhhhhhhhhhhhcCccccccCCCe
Confidence 3444555666 899999999999999999999 89999999999999886421 0 011124799999999999
Q ss_pred EEeccCcCCCCCceeEEEEcCCCCcHHHHHHHHHHHhcc
Q psy7560 75 TNVPVGLDGKGLPLGDRVFFSTAGTVTGVRLDSIPEQAR 113 (507)
Q Consensus 75 isvP~g~~~~GLPvGvQlvg~~~~D~~lL~~a~~~E~~~ 113 (507)
+|||+|++.+|||+||||+|++++|..||++|++||+..
T Consensus 411 isvP~g~~~~glPvGlQivg~~~~D~~lL~~a~~le~~l 449 (452)
T PRK06102 411 VSLPCGTGAAGMPVGLLLSAPAGRDERLLRAALAVEAVI 449 (452)
T ss_pred EEEecCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 999999988999999999999999999999999999864
No 43
>TIGR02715 amido_AtzE amidohydrolase, AtzE family. Members of this protein family are aminohydrolases related to, but distinct from, glutamyl-tRNA(Gln) amidotransferase subunit A. The best characterized member is the biuret hydrolase of Pseudomonas sp. ADP, which hydrolyzes ammonia from the three-nitrogen compound biuret to yield allophanate. Allophanate is also an intermediate in urea degradation by the urea carboxylase/allophanate hydrolase pathway, an alternative to urease.
Probab=99.69 E-value=7.8e-17 Score=172.84 Aligned_cols=108 Identities=19% Similarity=0.179 Sum_probs=91.6
Q ss_pred HHHHhhccCc-hHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCccccc-----c----CccccccccccccCCC
Q psy7560 4 ILCSLCRMVP-SDQWAKEHTEILKTKLTELLGDNGVLVFPAAPESAPYHYATFF-----R----PYNFTYWALFNILDFP 73 (507)
Q Consensus 4 ~~~~~~~~~~-~~~~a~~~r~~~~~~~~~~f~~~Dvll~Pt~~~~a~~~~~~~~-----~----~~~~~~t~~~Nl~G~P 73 (507)
.+..+..++. +|.++++.|.+++++|.++|+++|+||+||+|.+||+++.... . .....||.+||++|+|
T Consensus 330 ~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~P 409 (452)
T TIGR02715 330 RLLAGALLPASWYAQAQRFRHWFRDAIRELFQRVDVLIAPATPCSAPLIGQETMIIDGVPVPVRANLGIFTQPISFAGLP 409 (452)
T ss_pred HHHcccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCcCcccccccCccchhhhhhHHhcCccchhcCCC
Confidence 3344445566 8999999999999999999999999999999999998864210 0 0112489999999999
Q ss_pred eEEeccCcCCCCCceeEEEEcCCCCcHHHHHHHHHHHhc
Q psy7560 74 VTNVPVGLDGKGLPLGDRVFFSTAGTVTGVRLDSIPEQA 112 (507)
Q Consensus 74 aisvP~g~~~~GLPvGvQlvg~~~~D~~lL~~a~~~E~~ 112 (507)
++|||+|+ .+|||+||||+|++++|.+||++|++||+.
T Consensus 410 aisvP~g~-~~glPvGlQivg~~~~D~~lL~~a~~le~~ 447 (452)
T TIGR02715 410 VLAAPLPR-PGRLPIGVQLIAAPWREDLCLRAAAVLERQ 447 (452)
T ss_pred eEEEeCCC-CCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence 99999998 589999999999999999999999999985
No 44
>PRK09201 amidase; Provisional
Probab=99.69 E-value=9.9e-17 Score=172.57 Aligned_cols=110 Identities=21% Similarity=0.202 Sum_probs=93.5
Q ss_pred HHHHhhccCc-hHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCccccc-----c----CccccccccccccCCC
Q psy7560 4 ILCSLCRMVP-SDQWAKEHTEILKTKLTELLGDNGVLVFPAAPESAPYHYATFF-----R----PYNFTYWALFNILDFP 73 (507)
Q Consensus 4 ~~~~~~~~~~-~~~~a~~~r~~~~~~~~~~f~~~Dvll~Pt~~~~a~~~~~~~~-----~----~~~~~~t~~~Nl~G~P 73 (507)
.+..+..++. +|.++++.|..++++|.++|+++|+||+||+|.+||+++.... . .....||.+||++|+|
T Consensus 337 ~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~P 416 (465)
T PRK09201 337 RLLAGAMLPAAWYVQAQRFRRWFRQAVLELFEHVDVLIAPATPCSAPLIGQETMRIDGVELPVRANLGILTQPISFIGLP 416 (465)
T ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCcccccccccCcchhhhhhhHHHhCccccccCCC
Confidence 4445555666 8999999999999999999999999999999999999864210 0 1112489999999999
Q ss_pred eEEeccCcCCCCCceeEEEEcCCCCcHHHHHHHHHHHhccc
Q psy7560 74 VTNVPVGLDGKGLPLGDRVFFSTAGTVTGVRLDSIPEQARR 114 (507)
Q Consensus 74 aisvP~g~~~~GLPvGvQlvg~~~~D~~lL~~a~~~E~~~~ 114 (507)
++|||+|+ .+|||+||||+|++++|.+||++|++||+..+
T Consensus 417 aisvP~g~-~~GlPvGlQivg~~~~D~~lL~~A~~le~~~~ 456 (465)
T PRK09201 417 VVAVPLRT-PGGLPIGVQLIAAPWREDLALRAAAALEQQGV 456 (465)
T ss_pred eEEEeCCC-CCCcCeEEEEECCCCCHHHHHHHHHHHHhhCc
Confidence 99999996 57999999999999999999999999999764
No 45
>PRK07869 amidase; Provisional
Probab=99.69 E-value=1.1e-16 Score=172.45 Aligned_cols=102 Identities=19% Similarity=0.190 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCcccccc----------CccccccccccccCCCeEEeccCcCC
Q psy7560 14 SDQWAKEHTEILKTKLTELLGDNGVLVFPAAPESAPYHYATFFR----------PYNFTYWALFNILDFPVTNVPVGLDG 83 (507)
Q Consensus 14 ~~~~a~~~r~~~~~~~~~~f~~~Dvll~Pt~~~~a~~~~~~~~~----------~~~~~~t~~~Nl~G~PaisvP~g~~~ 83 (507)
++.++++.|..+++.|.++|+++|+||+||+|.+||+++..... .....||.+||++|+|++|||+|++.
T Consensus 353 ~~~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~ 432 (468)
T PRK07869 353 RLPLAIARLRRLRRVYARFFGTYDVVLTPTLAHTTPEIGYLDPTQDFDTVLDRLISYVAFTPLQNATGEPAISLPLGQSS 432 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCEEecCCCCCCCCCCCccCccccchhhhHHHhcccccCccccccCCCceeeecCcCC
Confidence 56678888889999999999999999999999999998642110 01124799999999999999999988
Q ss_pred CCCceeEEEEcCCCCcHHHHHHHHHHHhcccc
Q psy7560 84 KGLPLGDRVFFSTAGTVTGVRLDSIPEQARRF 115 (507)
Q Consensus 84 ~GLPvGvQlvg~~~~D~~lL~~a~~~E~~~~~ 115 (507)
+|||+||||+|++++|..||++|++||+..+|
T Consensus 433 ~GlPvGlQivg~~~~D~~lL~~A~~le~~~~~ 464 (468)
T PRK07869 433 DGLPVGMMFSADVGDEATLLELAYELEEAQPW 464 (468)
T ss_pred CCCCeeEEEecCCCchHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999998765
No 46
>PLN02722 indole-3-acetamide amidohydrolase
Probab=99.69 E-value=8.4e-17 Score=170.82 Aligned_cols=109 Identities=21% Similarity=0.256 Sum_probs=94.4
Q ss_pred HHHHHHhhccCc-hHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCcccccc---C--ccccccccccccCCCeE
Q psy7560 2 LKILCSLCRMVP-SDQWAKEHTEILKTKLTELLGDNGVLVFPAAPESAPYHYATFFR---P--YNFTYWALFNILDFPVT 75 (507)
Q Consensus 2 ~~~~~~~~~~~~-~~~~a~~~r~~~~~~~~~~f~~~Dvll~Pt~~~~a~~~~~~~~~---~--~~~~~t~~~Nl~G~Pai 75 (507)
++++..+..++. +|.++++.|.++++++.++|+++|+||+||+|.+||+++..... . ....+|.++|++|+|++
T Consensus 306 ~~~~~~g~~~s~~~y~~a~~~r~~~~~~~~~~~~~~D~Ll~Pt~p~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~Pai 385 (422)
T PLN02722 306 SERIWEAVRTTEEKIDACQSVKTELRAALTTLLGEFGVLVIPTVPGPPPKLQADPTTLESFRARAFSLLSIAGVSGFCQV 385 (422)
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCcccCcchHHHHHHHHHHhhhcccccCCCEE
Confidence 456777788888 99999999999999999999999999999999999988632111 0 11247899999999999
Q ss_pred EeccCcCCCCCceeEEEEcCCCCcHHHHHHHHHHHh
Q psy7560 76 NVPVGLDGKGLPLGDRVFFSTAGTVTGVRLDSIPEQ 111 (507)
Q Consensus 76 svP~g~~~~GLPvGvQlvg~~~~D~~lL~~a~~~E~ 111 (507)
|||++++ +|||+||||+|++++|..||++|+.|..
T Consensus 386 svP~g~~-~glPvGlqivg~~~~D~~lL~~a~~l~~ 420 (422)
T PLN02722 386 SIPLGLH-DNLPVSVSLLAKHGSDGFLLNLVESLYG 420 (422)
T ss_pred EEeCCCC-CCCCEEEEEECCCCChHHHHHHHHHHHh
Confidence 9999986 7999999999999999999999999865
No 47
>PRK08310 amidase; Provisional
Probab=99.69 E-value=9.2e-17 Score=169.39 Aligned_cols=109 Identities=19% Similarity=0.305 Sum_probs=92.9
Q ss_pred HHHHhhccCc-hHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCcccccc-----CccccccccccccCCCeEEe
Q psy7560 4 ILCSLCRMVP-SDQWAKEHTEILKTKLTELLGDNGVLVFPAAPESAPYHYATFFR-----PYNFTYWALFNILDFPVTNV 77 (507)
Q Consensus 4 ~~~~~~~~~~-~~~~a~~~r~~~~~~~~~~f~~~Dvll~Pt~~~~a~~~~~~~~~-----~~~~~~t~~~Nl~G~Paisv 77 (507)
.+..+..++. +|.++++.|..++++|.++|+++|+||+||++.+||+++..... .....||.+||++|+|+++|
T Consensus 280 ~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~N~~G~Paisv 359 (395)
T PRK08310 280 RFAAGAEVTADQVEAARARRAAFARELAALLGPDAVLLLPTVPGAAPLRGAPFEALEAYRERALRLLCIAGLAGLPQISL 359 (395)
T ss_pred HHHhhccCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCccCCCccchHHHHHHHHHhhceeehhcCCCeEEE
Confidence 3444555666 89999999999999999999999999999999999998642111 11134799999999999999
Q ss_pred ccCcCCCCCceeEEEEcCCCCcHHHHHHHHHHHhcc
Q psy7560 78 PVGLDGKGLPLGDRVFFSTAGTVTGVRLDSIPEQAR 113 (507)
Q Consensus 78 P~g~~~~GLPvGvQlvg~~~~D~~lL~~a~~~E~~~ 113 (507)
|+|. .+|||+||||+|++++|.+||++|++||++.
T Consensus 360 P~g~-~~glPvglQivg~~~~D~~lL~~a~~le~~~ 394 (395)
T PRK08310 360 PLAS-VDGAPFGLSLIGPRGSDRSLLALAQTIAAAR 394 (395)
T ss_pred ECCC-CCCCCEEEEEECCCCCHHHHHHHHHHHHhhh
Confidence 9996 5899999999999999999999999999873
No 48
>PRK07056 amidase; Provisional
Probab=99.67 E-value=1.6e-16 Score=170.52 Aligned_cols=109 Identities=14% Similarity=-0.019 Sum_probs=91.9
Q ss_pred HHHHhhccCc-hHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCccccc---cC-----ccccccccccccCCCe
Q psy7560 4 ILCSLCRMVP-SDQWAKEHTEILKTKLTELLGDNGVLVFPAAPESAPYHYATFF---RP-----YNFTYWALFNILDFPV 74 (507)
Q Consensus 4 ~~~~~~~~~~-~~~~a~~~r~~~~~~~~~~f~~~Dvll~Pt~~~~a~~~~~~~~---~~-----~~~~~t~~~Nl~G~Pa 74 (507)
.+..+..++. +|.++++.|..+++.|.++|+++|+||+||+|.+||+++.... .. ....||.+||++|+|+
T Consensus 334 ~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~g~Pa 413 (454)
T PRK07056 334 RILRGEPMSAADYIDLLAARAAWIARAAARLARFDALVMPTVPIVPPRIADLEADDAAFFRTNALLLRNPSLINFLDGCA 413 (454)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHccCCEEEECCCCCCCCCcccccccchhhHHHHHHHhhcCccchhcCCCE
Confidence 3444455566 8999999999999999999999999999999999999864210 01 0123799999999999
Q ss_pred EEeccCcCCCCCceeEEEEcCCCCcHHHHHHHHHHHhcc
Q psy7560 75 TNVPVGLDGKGLPLGDRVFFSTAGTVTGVRLDSIPEQAR 113 (507)
Q Consensus 75 isvP~g~~~~GLPvGvQlvg~~~~D~~lL~~a~~~E~~~ 113 (507)
+|||+|+ .+|||+||||+|++++|.+||++|++||+..
T Consensus 414 isvP~g~-~~glPvGlqivg~~~~D~~lL~~a~~le~~l 451 (454)
T PRK07056 414 LSLPCHA-PGEAPVGLMLAGAPGRDDRLLAIALAVEAVL 451 (454)
T ss_pred EEEeCCC-CCCCCEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 9999996 5799999999999999999999999999864
No 49
>PRK07487 amidase; Provisional
Probab=99.67 E-value=1.8e-16 Score=170.71 Aligned_cols=107 Identities=14% Similarity=0.043 Sum_probs=90.6
Q ss_pred hhccCc-hHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCcccccc---C----ccccccccccccCCCeEEecc
Q psy7560 8 LCRMVP-SDQWAKEHTEILKTKLTELLGDNGVLVFPAAPESAPYHYATFFR---P----YNFTYWALFNILDFPVTNVPV 79 (507)
Q Consensus 8 ~~~~~~-~~~~a~~~r~~~~~~~~~~f~~~Dvll~Pt~~~~a~~~~~~~~~---~----~~~~~t~~~Nl~G~PaisvP~ 79 (507)
+..++. +|.++++.|.+++++|.++|+++|+||+||+|.+||+++..... . ....+|.+||++|+|++|||+
T Consensus 345 ~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~ 424 (469)
T PRK07487 345 ARPLDLAGYMNALARRATLTRQWQLFFEDYPLLLMPVSAELPFPDDLDRQGAEGFRRVWEAQLPQIALPFMGLPGLSVPT 424 (469)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCCCCCCCCCCCcCCchhhhhHHHHhhcccccccccCCCeEEEEC
Confidence 344556 89999999999999999999999999999999999988642110 0 011257789999999999999
Q ss_pred CcCCCCCceeEEEEcCCCCcHHHHHHHHHHHhcccc
Q psy7560 80 GLDGKGLPLGDRVFFSTAGTVTGVRLDSIPEQARRF 115 (507)
Q Consensus 80 g~~~~GLPvGvQlvg~~~~D~~lL~~a~~~E~~~~~ 115 (507)
|++ +||||||||+|++++|..||++|++||+..++
T Consensus 425 g~~-~GlPvGlQlvg~~~~D~~lL~~a~~lE~~~~~ 459 (469)
T PRK07487 425 GLV-GGVPVGVQLVAGRFREDLCLAAGEAIEARGGP 459 (469)
T ss_pred ccC-CCcceeEEEeCCCCCHHHHHHHHHHHHHhhCC
Confidence 986 69999999999999999999999999998663
No 50
>PRK07488 indole acetimide hydrolase; Validated
Probab=99.67 E-value=2.1e-16 Score=170.48 Aligned_cols=106 Identities=15% Similarity=0.111 Sum_probs=90.4
Q ss_pred ccCc-hHHHHHHH-HHHHHHHHHHHhc--CCCEEEeCCCCCCCCCCccccc---------cC-ccccccccccccCCCeE
Q psy7560 10 RMVP-SDQWAKEH-TEILKTKLTELLG--DNGVLVFPAAPESAPYHYATFF---------RP-YNFTYWALFNILDFPVT 75 (507)
Q Consensus 10 ~~~~-~~~~a~~~-r~~~~~~~~~~f~--~~Dvll~Pt~~~~a~~~~~~~~---------~~-~~~~~t~~~Nl~G~Pai 75 (507)
.++. +|.++++. |..+++.|.++|+ ++|+||+||+|.+||+++.... .. ....||.++|++|+|++
T Consensus 348 ~~~~~~~~~a~~~~r~~~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~t~~~n~~G~Pai 427 (472)
T PRK07488 348 QISEDAYRAALDVGRPRLQAWYRQAFARHGLDAILFPTTPLTAPPIGDDDTVILNGAAVPTFARVIRNTDPASNAGLPGL 427 (472)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEeCCCCCCCccccccccccccccchhhhhhhhcccccccccCCCeE
Confidence 3455 78889888 9999999999998 6899999999999998864210 00 11236899999999999
Q ss_pred EeccCcCCCCCceeEEEEcCCCCcHHHHHHHHHHHhcccc
Q psy7560 76 NVPVGLDGKGLPLGDRVFFSTAGTVTGVRLDSIPEQARRF 115 (507)
Q Consensus 76 svP~g~~~~GLPvGvQlvg~~~~D~~lL~~a~~~E~~~~~ 115 (507)
|||+|++.+|||+||||+|++++|.+||++|++||+..++
T Consensus 428 svP~g~~~~glPvGlqlig~~~~d~~LL~~A~~lE~~~~~ 467 (472)
T PRK07488 428 SLPAGLTPHGLPVGLELDGPAGSDRRLLAIGRALERVLGR 467 (472)
T ss_pred EEecCCCCCCCCeeEEEeCCCCCHHHHHHHHHHHHHhhCC
Confidence 9999998889999999999999999999999999998653
No 51
>TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit. This orthology group is more narrowly defined here than in Proc Natl Acad Aci USA 94, 11819-11826 (1997). In particular, a Rhodococcus homolog found in association with nitrile hydratase genes and described as an enantiomer-selective amidase active on several 2-aryl propionamides, is excluded here. It is likely, however, that the amidase subunit GatA is not exclusively a part of the Glu-tRNA(Gln) amidotransferase heterotrimer and restricted to that function in all species.
Probab=99.67 E-value=2e-16 Score=170.09 Aligned_cols=98 Identities=21% Similarity=0.211 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCccccc----cCccccccccccccCCCeEEeccCcCCCCCceeE
Q psy7560 15 DQWAKEHTEILKTKLTELLGDNGVLVFPAAPESAPYHYATFF----RPYNFTYWALFNILDFPVTNVPVGLDGKGLPLGD 90 (507)
Q Consensus 15 ~~~a~~~r~~~~~~~~~~f~~~Dvll~Pt~~~~a~~~~~~~~----~~~~~~~t~~~Nl~G~PaisvP~g~~~~GLPvGv 90 (507)
|.++++.|.++++.|.++|+++|+||+||+|.+||+++.... ....+.||.+||++|+|++|||+|+..+|||+||
T Consensus 359 ~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~nl~g~PaisvP~g~~~~GlPvGl 438 (460)
T TIGR00132 359 YLKAQKVRTLIIDDFLKLFEEVDVIVSPTAPTLPFKIGEKLDDPLEMYLSDILTVPANLAGLPAISVPCGVKEKGLPIGL 438 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCCcccccCchHhhhcccceeccccccCCCcEEEecCcCCCCCCeeE
Confidence 778899999999999999999999999999999999864211 1112247999999999999999999889999999
Q ss_pred EEEcCCCCcHHHHHHHHHHHhc
Q psy7560 91 RVFFSTAGTVTGVRLDSIPEQA 112 (507)
Q Consensus 91 Qlvg~~~~D~~lL~~a~~~E~~ 112 (507)
||+|++++|.+||++|++||+.
T Consensus 439 qlig~~~~D~~lL~~A~~le~~ 460 (460)
T TIGR00132 439 QIIGKCFDDKTLLQVSYAFEQA 460 (460)
T ss_pred EEECCCCchHHHHHHHHHHhhC
Confidence 9999999999999999999973
No 52
>PRK07139 amidase; Provisional
Probab=99.66 E-value=3e-16 Score=167.56 Aligned_cols=98 Identities=15% Similarity=0.148 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCcccccc--CccccccccccccCCCeEEeccCcCCCCCceeEEE
Q psy7560 15 DQWAKEHTEILKTKLTELLGDNGVLVFPAAPESAPYHYATFFR--PYNFTYWALFNILDFPVTNVPVGLDGKGLPLGDRV 92 (507)
Q Consensus 15 ~~~a~~~r~~~~~~~~~~f~~~Dvll~Pt~~~~a~~~~~~~~~--~~~~~~t~~~Nl~G~PaisvP~g~~~~GLPvGvQl 92 (507)
|.++++.|.++++.|.++|+++|+||+||+|.+||+++..... .....+|.++|++|+|++|||+| ..+|||+||||
T Consensus 334 ~~~a~~~r~~~~~~~~~~f~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g-~~~glPiGlqi 412 (439)
T PRK07139 334 FLKAKKVRRVIKNYYESIHNKFDIVIYPAYADIAPDIDENENKSDNYMDYILTISNLVGNPSLSIPLG-KYNNLPFNLAI 412 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCcccccccchhhhhhhcccCcccCCCCeEEEeCC-CCCCCCeEEEE
Confidence 7889999999999999999999999999999999988642110 11011478899999999999999 67899999999
Q ss_pred EcCCCCcHHHHHHHHHHHhcc
Q psy7560 93 FFSTAGTVTGVRLDSIPEQAR 113 (507)
Q Consensus 93 vg~~~~D~~lL~~a~~~E~~~ 113 (507)
+|++++|..||++|++||+..
T Consensus 413 vg~~~~D~~LL~~A~~lE~~~ 433 (439)
T PRK07139 413 DSKIYDDEKLLSYSLYIEELI 433 (439)
T ss_pred ECCCCChHHHHHHHHHHHHHh
Confidence 999999999999999999974
No 53
>TIGR02713 allophanate_hyd allophanate hydrolase. Allophanate hydrolase catalyzes the second reaction in an ATP-dependent two-step degradation of urea to ammonia and C02, following the action of the biotin-containing urea carboxylase. The yeast enzyme, a fusion of allophanate hydrolase to urea carboxylase, is designated urea amidolyase.
Probab=99.66 E-value=3.4e-16 Score=171.08 Aligned_cols=113 Identities=24% Similarity=0.265 Sum_probs=94.7
Q ss_pred HHHHHhhccCc-hHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCccccc----cCccccccccccccCCCeEEe
Q psy7560 3 KILCSLCRMVP-SDQWAKEHTEILKTKLTELLGDNGVLVFPAAPESAPYHYATFF----RPYNFTYWALFNILDFPVTNV 77 (507)
Q Consensus 3 ~~~~~~~~~~~-~~~~a~~~r~~~~~~~~~~f~~~Dvll~Pt~~~~a~~~~~~~~----~~~~~~~t~~~Nl~G~Paisv 77 (507)
+++..+..++. ++.++++.|+.+++++.++|+++|+||+||+|.+++..+.... ......||.++|++|+|+++|
T Consensus 296 ~~l~~g~~~sa~~~~~a~~~r~~l~~~~~~~~~~~DvLl~Pt~p~~~~~~~~~~~~~~~~~~~~~yT~~~Nl~glPAisv 375 (561)
T TIGR02713 296 GIITSATRFSAADAFAAQYRLAALRRKAEALLAGVDVLLVPTAPTHPTIEEVLADPVGLNSRLGTYTNFVNLLDLCAVAV 375 (561)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCchhccCCchhhhhhhhcccccccccCCceEEe
Confidence 44555566667 8999999999999999999999999999999998764321110 111124899999999999999
Q ss_pred ccCcCCCCCceeEEEEcCCCCcHHHHHHHHHHHhcccc
Q psy7560 78 PVGLDGKGLPLGDRVFFSTAGTVTGVRLDSIPEQARRF 115 (507)
Q Consensus 78 P~g~~~~GLPvGvQlvg~~~~D~~lL~~a~~~E~~~~~ 115 (507)
|+|+..+|||+||||+|++++|..||++|++||++.+|
T Consensus 376 P~g~~~~GlPvGvqlig~~~~D~~LL~~A~~le~~~~~ 413 (561)
T TIGR02713 376 PAGFRSDGLPFGVTLIGPAFHDAALASLGRRLQAASAL 413 (561)
T ss_pred ecccCCCCCCEEEEEEcCCCChHHHHHHHHHHHhccCc
Confidence 99998899999999999999999999999999998653
No 54
>PRK05962 amidase; Validated
Probab=99.66 E-value=3.4e-16 Score=166.57 Aligned_cols=108 Identities=15% Similarity=0.062 Sum_probs=90.9
Q ss_pred HHHHhhccCc-hHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCcccccc---C---c--cccccccccccCCCe
Q psy7560 4 ILCSLCRMVP-SDQWAKEHTEILKTKLTELLGDNGVLVFPAAPESAPYHYATFFR---P---Y--NFTYWALFNILDFPV 74 (507)
Q Consensus 4 ~~~~~~~~~~-~~~~a~~~r~~~~~~~~~~f~~~Dvll~Pt~~~~a~~~~~~~~~---~---~--~~~~t~~~Nl~G~Pa 74 (507)
.+..+..++. +|.++++.|..+++.|.++|+++|+||+||+|.+||+++..... + . ...||.+||++|+|+
T Consensus 305 ~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~n~~G~Pa 384 (424)
T PRK05962 305 PLSRRIKVPLEAYHRLMRTRAALARAMDERLAGFDMFALPATPIVAPTIASVSEDEEEYDRVENLLLRNTQVANQFDLCS 384 (424)
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCccccccchHHHHHHHHHHHhhCcCccccCCCe
Confidence 3444455666 89999999999999999999999999999999999988642111 1 0 123799999999999
Q ss_pred EEeccCcCCCCCceeEEEEcCCCCcHHHHHHHHHHHhcc
Q psy7560 75 TNVPVGLDGKGLPLGDRVFFSTAGTVTGVRLDSIPEQAR 113 (507)
Q Consensus 75 isvP~g~~~~GLPvGvQlvg~~~~D~~lL~~a~~~E~~~ 113 (507)
+|||++. +|||+||||+|++++|..||++|++||+..
T Consensus 385 ~svP~g~--~glPvGlqlvg~~~~D~~lL~~a~~le~~l 421 (424)
T PRK05962 385 ITLPMPG--MALPAGLMLTARNGSDRRLLAAAASVEKLL 421 (424)
T ss_pred EEEECCC--CCCCEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 9999984 699999999999999999999999999864
No 55
>PRK08137 amidase; Provisional
Probab=99.65 E-value=4.9e-16 Score=168.59 Aligned_cols=105 Identities=18% Similarity=0.083 Sum_probs=84.7
Q ss_pred hccCc-hHHHHHHHHHHH--HHHHHHHhc--CCCEEEeCCCCCCCCCCccccccCccccccccccccCCCeEEeccCcCC
Q psy7560 9 CRMVP-SDQWAKEHTEIL--KTKLTELLG--DNGVLVFPAAPESAPYHYATFFRPYNFTYWALFNILDFPVTNVPVGLDG 83 (507)
Q Consensus 9 ~~~~~-~~~~a~~~r~~~--~~~~~~~f~--~~Dvll~Pt~~~~a~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~ 83 (507)
..++. +|.++++.+..+ +++|.++|+ ++|+||+||++ +||+++..........+|.+||++|+|++|||+|+.
T Consensus 376 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~-~ap~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~- 453 (497)
T PRK08137 376 PGLDDPAYLDALADAKRLAGPEGIDAALKEHRLDALVAPTTG-PAWLIDLINGDSFGGSSSTPAAVAGYPHLTVPMGQV- 453 (497)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEeCCCC-CCcccccccccccccccccccHhhCCCeEEEeCCCC-
Confidence 33445 777777655544 489999997 68999999999 888886421111122478899999999999999996
Q ss_pred CCCceeEEEEcCCCCcHHHHHHHHHHHhcccc
Q psy7560 84 KGLPLGDRVFFSTAGTVTGVRLDSIPEQARRF 115 (507)
Q Consensus 84 ~GLPvGvQlvg~~~~D~~lL~~a~~~E~~~~~ 115 (507)
+||||||||+|++++|..||++|++||+..+|
T Consensus 454 ~GlPvGvQlig~~~~d~~LL~~a~~lE~~~~~ 485 (497)
T PRK08137 454 QGLPVGLSFIGAAWSEARLLELGYAYEQATHA 485 (497)
T ss_pred CCcCeEEEEECCCCCHHHHHHHHHHHHHhcCc
Confidence 89999999999999999999999999998664
No 56
>PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed
Probab=99.65 E-value=4.2e-16 Score=167.58 Aligned_cols=96 Identities=20% Similarity=0.195 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCcccc----ccCccccccccccccCCCeEEeccCcCCCCCceeE
Q psy7560 15 DQWAKEHTEILKTKLTELLGDNGVLVFPAAPESAPYHYATF----FRPYNFTYWALFNILDFPVTNVPVGLDGKGLPLGD 90 (507)
Q Consensus 15 ~~~a~~~r~~~~~~~~~~f~~~Dvll~Pt~~~~a~~~~~~~----~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GLPvGv 90 (507)
|.++++.|.+++++|.++|+++|+||+||+|.+||+++... .....+.||.+||++|+|++|||+|++.+|||+||
T Consensus 360 ~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~n~~G~PaisvP~g~~~~glPvGl 439 (459)
T PRK00012 360 YLKAQKVRTLIKQDFEKAFEKVDVILGPTAPTTAFKIGEKTDDPLAMYLSDIFTVPANLAGLPAISVPAGFDDGGLPVGL 439 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCcccccccCchHhhhccccccccccccCCCcEEEecCCCCCCCCEEE
Confidence 67788899999999999999999999999999999986421 11122348999999999999999999888999999
Q ss_pred EEEcCCCCcHHHHHHHHHHH
Q psy7560 91 RVFFSTAGTVTGVRLDSIPE 110 (507)
Q Consensus 91 Qlvg~~~~D~~lL~~a~~~E 110 (507)
||+|++++|.+||++|++||
T Consensus 440 qlvg~~~~D~~LL~~a~~~E 459 (459)
T PRK00012 440 QLIGKYFDEETLLNVAYAFE 459 (459)
T ss_pred EEECCCCchHHHHHHHHHhC
Confidence 99999999999999999987
No 57
>PRK08186 allophanate hydrolase; Provisional
Probab=99.64 E-value=7.1e-16 Score=170.07 Aligned_cols=113 Identities=19% Similarity=0.213 Sum_probs=94.3
Q ss_pred HHHHHhhccCc-hHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCcccc---c-cCccccccccccccCCCeEEe
Q psy7560 3 KILCSLCRMVP-SDQWAKEHTEILKTKLTELLGDNGVLVFPAAPESAPYHYATF---F-RPYNFTYWALFNILDFPVTNV 77 (507)
Q Consensus 3 ~~~~~~~~~~~-~~~~a~~~r~~~~~~~~~~f~~~Dvll~Pt~~~~a~~~~~~~---~-~~~~~~~t~~~Nl~G~Paisv 77 (507)
+++..+..++. ++.+++..|..+++++.++|+++|+||+||+|.+++..+... . ......||.+||++|+|+++|
T Consensus 333 ~~i~~g~~~sa~~~~~a~~~r~~l~~~~~~~~~~~D~Ll~Pt~p~~~~~~~~~~~~~~~~~~~~~yT~~~Nl~glPAisv 412 (600)
T PRK08186 333 GIIAGAAAFSAADAFRALYRLAELRRAAEAVLAGIDALLVPTAPTHPTIAEVAADPIGLNSRLGTYTNFVNLLDLCALAV 412 (600)
T ss_pred HHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCchhhcCCchhhhhhhhhccccccccCCCeEEE
Confidence 34555566666 899999999999999999999999999999999875322110 0 111124899999999999999
Q ss_pred ccCcCCCCCceeEEEEcCCCCcHHHHHHHHHHHhcccc
Q psy7560 78 PVGLDGKGLPLGDRVFFSTAGTVTGVRLDSIPEQARRF 115 (507)
Q Consensus 78 P~g~~~~GLPvGvQlvg~~~~D~~lL~~a~~~E~~~~~ 115 (507)
|+|+..+|||+||||+|++++|..||++|++||+..+|
T Consensus 413 P~g~~~~GlPvGvqlig~~~~D~~LL~~A~~le~~~~~ 450 (600)
T PRK08186 413 PAGFRADGLPFGVTLIAPAFADQALADLAARLQAALAL 450 (600)
T ss_pred ecccCCCCCCeeEEEEcCCCCHHHHHHHHHHHHhhccc
Confidence 99998899999999999999999999999999998764
No 58
>PRK06828 amidase; Provisional
Probab=99.47 E-value=1.5e-13 Score=148.47 Aligned_cols=90 Identities=18% Similarity=0.185 Sum_probs=77.6
Q ss_pred hhccCc-hHHHHHHHHHHH--HHHHHHHhcC--CCEEEeCCCCCCCCCCccccccCccccccccccccCCCeEEeccCcC
Q psy7560 8 LCRMVP-SDQWAKEHTEIL--KTKLTELLGD--NGVLVFPAAPESAPYHYATFFRPYNFTYWALFNILDFPVTNVPVGLD 82 (507)
Q Consensus 8 ~~~~~~-~~~~a~~~r~~~--~~~~~~~f~~--~Dvll~Pt~~~~a~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~ 82 (507)
+..++. +|.++++.|..+ ++.+.++|++ +|+||+||++.. .++|++|+|++|||+|++
T Consensus 389 g~~~~~~~y~~a~~~r~~~~~~~~~~~~~~~~~~D~ll~Pt~~~~-----------------~~~~~~GlPaisvP~G~~ 451 (491)
T PRK06828 389 PNTLRNPEYLNARLEDIYFSQEQGIDFALEKYNLDAILFPSYIGS-----------------TICAKAGYPSIAIPAGYM 451 (491)
T ss_pred CCCCChHHHHHHHHHHHHhhhHHHHHHHHHhcCCCEEEeCCCCcc-----------------cchhhcCCCeEEeecCCC
Confidence 344455 888888888775 4799999984 899999999754 235799999999999998
Q ss_pred CCCCceeEEEEcCCCCcHHHHHHHHHHHhccc
Q psy7560 83 GKGLPLGDRVFFSTAGTVTGVRLDSIPEQARR 114 (507)
Q Consensus 83 ~~GLPvGvQlvg~~~~D~~lL~~a~~~E~~~~ 114 (507)
.+|||+||||+|++++|.+||++|++||+..+
T Consensus 452 ~~GlPvGlQlig~~~~D~~LL~~A~a~E~~~~ 483 (491)
T PRK06828 452 EGGRPFGITLASTAFSEGTLIKLAYAFEQATK 483 (491)
T ss_pred CCCcCeEEEEECCCCCHHHHHHHHHHHHHhCC
Confidence 88999999999999999999999999999855
No 59
>PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence. They are widespread, being found in both prokaryotes and eukaryotes. AS enzymes catalyse the hydrolysis of amide bonds (CO-NH2), although the family has diverged widely with regard to substrate specificity and function. Nonetheless, these enzymes maintain a core alpha/beta/alpha structure, where the topologies of the N- and C-terminal halves are similar. AS enzymes characteristically have a highly conserved C-terminal region rich in serine and glycine residues, but devoid of aspartic acid and histidine residues, therefore they differ from classical serine hydrolases. These enzymes posses a unique, highly conserved Ser-Ser-Lys catalytic triad used for amide hydrolysis, although the catalytic mechanism for acyl-enzyme intermediate formation can differ between enzymes []. Examples of AS enzymes include: Peptide amidase (Pam) [], which catalyses the hydrolysis of the C-terminal amide bond of peptides. Fatty acid amide hydrolases [], which hydrolyse fatty acid amid substrates (e.g. cannabinoid anandamide and sleep-inducing oleamide), thereby controlling the level and duration of signalling induced by this diverse class of lipid transmitters. Malonamidase E2 [], which catalyses the hydrolysis of malonamate into malonate and ammonia, and which is involved in the transport of fixed nitrogen from bacteroids to plant cells in symbiotic nitrogen metabolism. Subunit A of Glu-tRNA(Gln) amidotransferase [],a heterotrimeric enzyme that catalyses the formation of Gln-tRNA(Gln) by the transamidation of misacylated Glu-tRNA(Gln) via amidolysis of glutamine. ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 1OCL_B 1OBK_A 1OBL_B 1OBJ_A 1OCM_B 1OCH_A 1OCK_B 1OBI_A 1O9Q_A 1O9N_B ....
Probab=99.45 E-value=4.6e-14 Score=149.28 Aligned_cols=89 Identities=24% Similarity=0.296 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCcccccc----------CccccccccccccCCCeEEeccCcCCC
Q psy7560 15 DQWAKEHTEILKTKLTELLGDNGVLVFPAAPESAPYHYATFFR----------PYNFTYWALFNILDFPVTNVPVGLDGK 84 (507)
Q Consensus 15 ~~~a~~~r~~~~~~~~~~f~~~Dvll~Pt~~~~a~~~~~~~~~----------~~~~~~t~~~Nl~G~PaisvP~g~~~~ 84 (507)
|.++++.|..+++++.++|+++|+||+|+++.+||+++..... .....+|.++|++|+|+++||+|+..+
T Consensus 343 ~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~t~~~n~~g~PaisvP~g~~~~ 422 (441)
T PF01425_consen 343 YLQAQRRRARLRRRFDELFEEYDALLTPTTPVPAPPIGEPSPLGPDYTALWNLLDFTAYTSPANLAGLPAISVPVGFDPD 422 (441)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSEEEEESSSSS-BBTTTTCCCTSCHHHHHHHHTTTTTTHHHHHHTHHEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHhhcceecccCCCcCCCccccccccccchhhhhhhhhhhccccccccccCcceeeecCCCCC
Confidence 8899999999999999999999999999999999998864321 111246799999999999999999888
Q ss_pred CCceeEEEEcCCCCcHHHH
Q psy7560 85 GLPLGDRVFFSTAGTVTGV 103 (507)
Q Consensus 85 GLPvGvQlvg~~~~D~~lL 103 (507)
|||+||||+|++++|.+||
T Consensus 423 GlPvGvqlvg~~~~D~~LL 441 (441)
T PF01425_consen 423 GLPVGVQLVGRPGSDEKLL 441 (441)
T ss_dssp TEEEEEEEEESTTBHHHHH
T ss_pred CcCEeEEEECCCCCccCcC
Confidence 9999999999999999997
No 60
>KOG1212|consensus
Probab=99.42 E-value=4.3e-13 Score=143.31 Aligned_cols=101 Identities=33% Similarity=0.481 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHHHHHHH--HHhcCCCEEEeCCCCCCCCCCccccccCccccccccccccCCCeEEeccC-----------
Q psy7560 14 SDQWAKEHTEILKTKLT--ELLGDNGVLVFPAAPESAPYHYATFFRPYNFTYWALFNILDFPVTNVPVG----------- 80 (507)
Q Consensus 14 ~~~~a~~~r~~~~~~~~--~~f~~~Dvll~Pt~~~~a~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g----------- 80 (507)
+..+.+..+..++.++. ....+.||||||+.|++||+|+.+.....++.||.+||++|+||.+||++
T Consensus 424 ~~~~~~~~~e~yrlk~~~~~~~~~~dVll~Ps~~~pA~~h~~P~~~~~~~~Yt~LfN~Ld~Pag~vpvt~v~~~d~~~~~ 503 (560)
T KOG1212|consen 424 ELRQNYEDIESYRLKFILYWLLGKDDVLICPSFPTPAPPHNYPLLLVNGFSYTGLFNVLDFPAGVVPVTTVTQKDEKEEE 503 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCEEEeCCCCCCCCcCCCchhhccchhHHHHHHhccCCcccccccccchhhhcccc
Confidence 33444444555555554 44467899999999999999987766677789999999999999998876
Q ss_pred ---------------cCCCCCceeEEEEcCCCCcHHHHHHHHHHHhccc
Q psy7560 81 ---------------LDGKGLPLGDRVFFSTAGTVTGVRLDSIPEQARR 114 (507)
Q Consensus 81 ---------------~~~~GLPvGvQlvg~~~~D~~lL~~a~~~E~~~~ 114 (507)
.+..|||+|||+||.+++|+.+|++|+.+|+..+
T Consensus 504 ~~~~D~~~~~~~~g~~~s~GlPigVQVVa~p~~delcL~va~~lE~~~g 552 (560)
T KOG1212|consen 504 YPMNDKWATKVPKGSLDSRGLPIGVQVVANPNQDELCLAVARELERKFG 552 (560)
T ss_pred cccccHHHHhCcccccCCCCCceeEEEecCCCchHHHHHHHHHHHHHhC
Confidence 3446999999999999999999999999999864
No 61
>PRK06707 amidase; Provisional
Probab=99.30 E-value=7.2e-12 Score=136.55 Aligned_cols=81 Identities=22% Similarity=0.236 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHhc--CCCEEEeCCCCCCCCCCccccccCccccccccccccCCCeEEeccCcCCCCCceeEEEEc
Q psy7560 17 WAKEHTEILKTKLTELLG--DNGVLVFPAAPESAPYHYATFFRPYNFTYWALFNILDFPVTNVPVGLDGKGLPLGDRVFF 94 (507)
Q Consensus 17 ~a~~~r~~~~~~~~~~f~--~~Dvll~Pt~~~~a~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GLPvGvQlvg 94 (507)
.+++.|..+++.+.++|+ ++|+||+|.. ..+.++|++|+|++|||+|++.+|+|+||||+|
T Consensus 447 ~~~~~r~~~~~~~~~~~~~~~~Dall~p~~-----------------~~t~~an~aG~PaitvP~G~~~~GlP~Glqlig 509 (536)
T PRK06707 447 VVQTSQENAKKELDRYLVEKGLDALVMINN-----------------EEVLLSAVAGYPELAVPAGYDNNGEPVGAVFVG 509 (536)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCEEEecCC-----------------CcchhhHhcCCCeEEEecccCCCCCCeEEEEEC
Confidence 356667788899999998 8999999731 126789999999999999998899999999999
Q ss_pred CCCCcHHHHHHHHHHHhccc
Q psy7560 95 STAGTVTGVRLDSIPEQARR 114 (507)
Q Consensus 95 ~~~~D~~lL~~a~~~E~~~~ 114 (507)
++++|.+||++|++||+..+
T Consensus 510 ~~~~e~~LL~~A~~~E~~~~ 529 (536)
T PRK06707 510 KQFGEKELFNIGYAYEQQSK 529 (536)
T ss_pred CCCChHHHHHHHHHHHHhCc
Confidence 99999999999999999865
No 62
>PRK11910 amidase; Provisional
Probab=99.15 E-value=1.2e-10 Score=127.54 Aligned_cols=82 Identities=16% Similarity=0.186 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHhc--CCCEEEeCCCCCCCCCCccccccCccccccccccccCCCeEEeccCcCC-CCCceeEEEEc
Q psy7560 18 AKEHTEILKTKLTELLG--DNGVLVFPAAPESAPYHYATFFRPYNFTYWALFNILDFPVTNVPVGLDG-KGLPLGDRVFF 94 (507)
Q Consensus 18 a~~~r~~~~~~~~~~f~--~~Dvll~Pt~~~~a~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~-~GLPvGvQlvg 94 (507)
+++.|..+++.+..+|+ ++|+||+|+... ...+ ..+++|+|+++||+|++. +|||+||||+|
T Consensus 523 ~~~~~~~~~~~l~~~~~~~~lDalv~P~~~~-------------~~~~--~~~~aG~PaItVP~G~~~~~GlPvGlqliG 587 (615)
T PRK11910 523 ASNLIQSSQNELDSVLQKDKLDAVVTIGMGG-------------SVMF--LAPIAGNPELTIPAGYDEESNQPISLTFIT 587 (615)
T ss_pred HHHHHHHHHHHHHHHHHHCCCcEEEeCCCCC-------------cchh--hhhhcCCCeEEecccCCCCCCcCeEEEEEC
Confidence 55667778888999996 799999997311 0112 235999999999999986 69999999999
Q ss_pred CCCCcHHHHHHHHHHHhccc
Q psy7560 95 STAGTVTGVRLDSIPEQARR 114 (507)
Q Consensus 95 ~~~~D~~lL~~a~~~E~~~~ 114 (507)
+++.|..||++|++||++..
T Consensus 588 ~~~sE~~LL~~A~a~Eq~t~ 607 (615)
T PRK11910 588 ARNSDKILLNMGYAYEQQSK 607 (615)
T ss_pred CCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999976
No 63
>KOG1211|consensus
Probab=98.99 E-value=9.5e-10 Score=116.85 Aligned_cols=97 Identities=22% Similarity=0.283 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHH---HHhcCCCEEEeCCCCCCCCCCccc----cccCccccccccccccCCCeEEeccCcCCCCCc
Q psy7560 15 DQWAKEHTEILKTKLT---ELLGDNGVLVFPAAPESAPYHYAT----FFRPYNFTYWALFNILDFPVTNVPVGLDGKGLP 87 (507)
Q Consensus 15 ~~~a~~~r~~~~~~~~---~~f~~~Dvll~Pt~~~~a~~~~~~----~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GLP 87 (507)
+++|++.|+.++..+. ..+++.|+|++||.|.+.+..... ......+.++.+.|++|+|++|||+|+..+|+|
T Consensus 390 f~~a~~~rr~i~~~~~~~~~~~~~vD~l~~pt~~~~~~~~~~~~~~~~~~~~~~~~~~~anlaGlP~isiP~G~~~~g~P 469 (506)
T KOG1211|consen 390 FEKALEVRRLIQEDFNRRKAALEGVDYLVTPTAPPPLYREFEKETLFAVSTLDDIFTQPANLAGLPAISIPVGLKNGGLP 469 (506)
T ss_pred HHHHHHHHHHHHHhhhhcccccccCCeeeccCCCCcchhhhhhcccccccccccceeecccccCCCceEEeeeecCCCCc
Confidence 5577788888888888 788899999999954444332221 112344678999999999999999999999999
Q ss_pred eeEEEEcCCCCcHHHHHHHHHHHh
Q psy7560 88 LGDRVFFSTAGTVTGVRLDSIPEQ 111 (507)
Q Consensus 88 vGvQlvg~~~~D~~lL~~a~~~E~ 111 (507)
+|+|++|..++|.+++.++.++|+
T Consensus 470 ~glqi~g~~~~e~~~~~l~~~~~~ 493 (506)
T KOG1211|consen 470 IGLQIMGGAFAEPTLIDLALAIGQ 493 (506)
T ss_pred eEEEeecccccchHHHHHHHhhcc
Confidence 999999999999999999999998
No 64
>PRK06565 amidase; Validated
Probab=98.98 E-value=1.6e-09 Score=118.02 Aligned_cols=101 Identities=15% Similarity=0.151 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHHHH-HHHHHhcC--CCEEEeCCCCCCCCCCccccccC--------ccccc-cccccccCCCeEEeccCc
Q psy7560 14 SDQWAKEHTEILKT-KLTELLGD--NGVLVFPAAPESAPYHYATFFRP--------YNFTY-WALFNILDFPVTNVPVGL 81 (507)
Q Consensus 14 ~~~~a~~~r~~~~~-~~~~~f~~--~Dvll~Pt~~~~a~~~~~~~~~~--------~~~~~-t~~~Nl~G~PaisvP~g~ 81 (507)
.+.++++.+...++ .+.++|+. .|+||.|+.+..++..+...... ..... ....+++|+|++|||+|+
T Consensus 442 ~~~~~~~~l~~~~~~~~e~~~~~~~lDalv~P~~~~~~~~~~~~~~~~~~~~~~~g~~~~ng~~a~~~~G~P~vtVP~G~ 521 (566)
T PRK06565 442 TLPDGLRGLEKTRKLDLEDWMDGLGLDAVLFPTVADVGPADADVNPASADIAWSNGVWVANGNLAIRHLGVPTVTVPMGV 521 (566)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCccccccccchhhhhccccCcccccchhhHHhcCCCeeEeeccc
Confidence 45556666666655 67777764 68999999999888755322110 00112 344589999999999999
Q ss_pred C-CCCCceeEEEEcCCCCcHHHHHHHHHHHhccc
Q psy7560 82 D-GKGLPLGDRVFFSTAGTVTGVRLDSIPEQARR 114 (507)
Q Consensus 82 ~-~~GLPvGvQlvg~~~~D~~lL~~a~~~E~~~~ 114 (507)
. +.|||+||+|+|++|+|.+||++|++||++..
T Consensus 522 ~~~~G~PvGl~~~G~a~~e~~Ll~~A~a~E~~~~ 555 (566)
T PRK06565 522 MADIGMPVGLTFAGRAYDDNALLRFAAAFEATGS 555 (566)
T ss_pred cCCCCCCeeEEeecCCcchHHHHHHHHHHHHHhc
Confidence 7 47999999999999999999999999999864
No 65
>PF11268 DUF3071: Protein of unknown function (DUF3071); InterPro: IPR021421 Some members in this family of proteins are annotated as DNA-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=43.57 E-value=1.5e+02 Score=27.76 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=28.0
Q ss_pred ccCHHHHHHHHHcCCCCHHHHHHHH---HHHHHHhC
Q psy7560 186 LESATQIAKKIRNKNITSVEVVQAF---IERIEQVN 218 (507)
Q Consensus 186 ~~s~~~l~~~l~~g~~t~~ev~~~~---l~ri~~~~ 218 (507)
.++..||++.||+| .|++||.+.+ ++||+.+.
T Consensus 56 ~L~PReIQarIRaG-as~eeVA~~~G~~~~rV~rfa 90 (170)
T PF11268_consen 56 SLRPREIQARIRAG-ASAEEVAEEAGVPVERVRRFA 90 (170)
T ss_pred CCCHHHHHHHHHCC-CCHHHHHHHhCCCHHHhhhcc
Confidence 68999999999999 8999999998 67777653
No 66
>COG2306 Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]
Probab=27.40 E-value=1.3e+02 Score=28.25 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=22.2
Q ss_pred ccCHHHHHHHHHcCCCCHHHHHHHHH
Q psy7560 186 LESATQIAKKIRNKNITSVEVVQAFI 211 (507)
Q Consensus 186 ~~s~~~l~~~l~~g~~t~~ev~~~~l 211 (507)
-++..||..+++.|.+|+.+.-+++-
T Consensus 122 l~DeDEL~~Al~~GlIT~~qf~~Ay~ 147 (183)
T COG2306 122 LLDEDELEDALRYGLITPEQFEKAYR 147 (183)
T ss_pred EecHHHHHHHHHcCCCCHHHHHHHHH
Confidence 37999999999999999999766653
No 67
>PRK15468 carboxysome structural protein EutS; Provisional
Probab=21.88 E-value=1.6e+02 Score=25.39 Aligned_cols=68 Identities=12% Similarity=0.076 Sum_probs=46.1
Q ss_pred ceeccccCChhhHHHHHHHhcCCCCCCCCCCCccCCCCCcEEEEECCCC-CCCCCCCCHHHHHHHHHHHHHHHhcCCCEE
Q psy7560 397 LAAGPIVKHAEDLLPYSKCLILPDKLPAYNFDKSVDLAKLKVFYVEEPG-DMKVSPMSKDMIQAIRKCVNALKVVSHSEP 475 (507)
Q Consensus 397 ~~~Gp~ar~v~D~~~~~~~l~~~~~~d~~~~~~~~~~~~lrig~~~~~g-~~~~~~~~~~~~~~~~~~~~~L~~~~G~~v 475 (507)
+.+|.|+=|....+.+..-++-. ...+.||+.+.+. ......--.+|..+++++++.|++.||..+
T Consensus 39 ~AIGIlTiTP~E~aIIAaDIA~K-------------aa~V~igF~DRFsGslvitGdvs~Ve~Al~~V~~~l~~~L~F~~ 105 (111)
T PRK15468 39 GAIGIMTLTPGETAMIAGDLALK-------------AADVHIGFLDRFSGALVIYGSVGAVEEALSQTVSGLGRLLNYTL 105 (111)
T ss_pred CceEEEEeCcchHHHHHHHhhhh-------------ccCcEEeeeeccceeEEEEccHHHHHHHHHHHHHHHHhhcCccc
Confidence 46777777777776655444322 3456888886542 222223347899999999999999778887
Q ss_pred EE
Q psy7560 476 ED 477 (507)
Q Consensus 476 ~~ 477 (507)
.+
T Consensus 106 ~~ 107 (111)
T PRK15468 106 CE 107 (111)
T ss_pred cc
Confidence 66
No 68
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=21.53 E-value=33 Score=24.35 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=18.4
Q ss_pred ccCHHHHHHHHHcCCCCHHHHH
Q psy7560 186 LESATQIAKKIRNKNITSVEVV 207 (507)
Q Consensus 186 ~~s~~~l~~~l~~g~~t~~ev~ 207 (507)
-.|..||++++++|++++..++
T Consensus 13 P~s~~el~~l~~~g~i~~~tlv 34 (45)
T PF14237_consen 13 PFSLEELRQLISSGEIDPDTLV 34 (45)
T ss_pred CcCHHHHHHHHHcCCCCCCCeE
Confidence 3689999999999999986653
No 69
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=20.77 E-value=47 Score=36.97 Aligned_cols=37 Identities=27% Similarity=0.310 Sum_probs=24.8
Q ss_pred ccCcceeecCCCCccCCCCCCCCCCCCCCcceeccccCC-hhhHH
Q psy7560 367 YCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKH-AEDLL 410 (507)
Q Consensus 367 ~~Gv~G~kPt~G~v~~~G~~p~~~~~~~~~~~~Gp~ar~-v~D~~ 410 (507)
.|||-|++|-.-.-|.-- ..++.|+.|||+|+ ++|++
T Consensus 383 AcGv~girpGtycepkmt-------tVGSQDTTGpMTrdElk~lA 420 (852)
T COG1049 383 ACGVPGIRPGTYCEPKMT-------TVGSQDTTGPMTRDELKDLA 420 (852)
T ss_pred ccCCccccCCCcccceee-------eeccccCCCCccHHHHHHHH
Confidence 589888887655444322 22378999999997 44544
Done!