Query psy7560
Match_columns 507
No_of_seqs 362 out of 2613
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 21:34:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7560.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7560hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ip4_A Glutamyl-tRNA(Gln) amid 100.0 5.7E-78 2E-82 647.6 30.7 304 183-498 2-316 (485)
2 2dc0_A Probable amidase; struc 100.0 3.4E-76 1.2E-80 625.4 26.3 292 187-500 1-294 (434)
3 3h0l_A Glutamyl-tRNA(Gln) amid 100.0 9.1E-76 3.1E-80 628.5 27.0 298 184-498 2-309 (478)
4 1m22_A Peptide amidase, PAM; e 100.0 3.2E-75 1.1E-79 628.8 28.3 288 183-485 7-316 (503)
5 3kfu_E Glutamyl-tRNA(Gln) amid 100.0 1.4E-74 4.8E-79 618.0 25.3 292 187-498 1-301 (471)
6 3a2q_A 6-aminohexanoate-cyclic 100.0 1.1E-73 3.7E-78 615.7 25.3 296 183-498 5-319 (493)
7 3ppm_A Fatty-acid amide hydrol 100.0 7E-74 2.4E-78 623.1 22.8 311 181-506 65-385 (573)
8 2gi3_A Glutamyl-tRNA(Gln) amid 100.0 4.6E-73 1.6E-77 608.4 19.9 291 181-498 4-303 (476)
9 1o9p_A Malonamidase E2; malona 100.0 1.7E-70 5.7E-75 578.2 23.4 279 187-499 2-281 (414)
10 3a1k_A Amidase; AS family enzy 100.0 1.5E-69 5.3E-74 585.6 6.8 301 183-494 9-331 (521)
11 3a2q_A 6-aminohexanoate-cyclic 99.7 2.3E-18 7.8E-23 185.1 10.3 113 3-115 346-476 (493)
12 3kfu_E Glutamyl-tRNA(Gln) amid 99.7 1.2E-18 4E-23 186.0 7.1 109 14-123 357-469 (471)
13 2dc0_A Probable amidase; struc 99.7 5.9E-18 2E-22 179.0 8.4 110 3-113 314-433 (434)
14 1o9p_A Malonamidase E2; malona 99.7 8.3E-18 2.8E-22 176.8 9.4 108 3-113 302-410 (414)
15 3h0l_A Glutamyl-tRNA(Gln) amid 99.7 8.2E-18 2.8E-22 179.9 8.9 102 14-116 367-472 (478)
16 3ip4_A Glutamyl-tRNA(Gln) amid 99.7 9.4E-18 3.2E-22 179.9 9.0 102 14-116 374-479 (485)
17 2gi3_A Glutamyl-tRNA(Gln) amid 99.7 1.2E-17 4E-22 178.8 7.1 101 14-115 360-463 (476)
18 3a1k_A Amidase; AS family enzy 99.7 4.1E-17 1.4E-21 176.1 8.5 104 11-115 391-504 (521)
19 1m22_A Peptide amidase, PAM; e 99.6 2.7E-16 9.2E-21 169.3 7.1 102 11-115 380-486 (503)
20 3ppm_A Fatty-acid amide hydrol 99.6 8E-16 2.7E-20 167.3 9.6 105 9-114 431-567 (573)
21 3shg_B VBHA; ampylation, adeny 37.2 41 0.0014 24.8 4.0 28 189-216 32-59 (61)
No 1
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Probab=100.00 E-value=5.7e-78 Score=647.56 Aligned_cols=304 Identities=25% Similarity=0.367 Sum_probs=281.9
Q ss_pred cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCeeEEecCcHHHHHHHHHHHHHH-HccCCCCCCCCCCccEEE
Q psy7560 183 KIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKI-ALEEDISDKPYLGVPFTS 261 (507)
Q Consensus 183 ~~~~~s~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~al~~A~~~d~~~-~~~~~~~~~pL~GiP~~v 261 (507)
++.++|+.+|+++|++|++|++||+++|++||+++|+.+||++++++++|+++|+++|+++ ++|+. +|||||||+|
T Consensus 2 ~l~~~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~~~~~g~~---gpL~GvPi~v 78 (485)
T 3ip4_A 2 SIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMD---GKLFGIPMGI 78 (485)
T ss_dssp CGGGCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHTTCCC---STTTTCEEEE
T ss_pred CcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHHHHHHHHHHhcCCC---CCcCCCEEEE
Confidence 4677899999999999999999999999999999999999999999999999999999998 66654 8999999999
Q ss_pred ecCCCCCCCcCCcCcccccCCCCCCcHHHHHHHHHcCCeEEEccccCCcC-CCCCCCCCCCCCCCCCCCCCCCCCCCchh
Q psy7560 262 KESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGGE 340 (507)
Q Consensus 262 KD~~~v~G~~tt~Gs~~~~~~~~~~da~~V~~L~~aGAii~GkTn~~e~~-~~~~~n~~~G~~~NP~~~~~~~GGSSgGs 340 (507)
||||+++|++||+||..+.++++.+||++|+||+++|||++||||||||+ +.++.|++||+|+||||++++||||||||
T Consensus 79 KD~~~v~G~~tt~Gs~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~t~n~~~G~t~NP~~~~~~pGGSSgGs 158 (485)
T 3ip4_A 79 KDNIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGS 158 (485)
T ss_dssp ETTBCBTTBCCCTTSGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHH
T ss_pred EcCcccCCCccCCCChhhcCCCCCCCcHHHHHHHHCCCEEEEecCCcccccCCCCCCCCCCCcCCccccCcCCCCCccHH
Confidence 99999999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHhhhcCCCceeeeccCCCcccccccccCcceeecCCCCccCCCCCCCCCCCCCCcceeccccCChhhHHHHHHHhcCCC
Q psy7560 341 ACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPD 420 (507)
Q Consensus 341 aaaVaag~~~~alGtDtgGSiR~PAa~~Gv~G~kPt~G~v~~~G~~p~~~~~~~~~~~~Gp~ar~v~D~~~~~~~l~~~~ 420 (507)
|++||+|++++|+|||||||||+||+||||||||||+|+||+.|++|.+. ++|++|||||||+|+++++++|.|+|
T Consensus 159 AaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~p~~~----sld~~Gp~aRsv~D~a~~l~vl~g~d 234 (485)
T 3ip4_A 159 AAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFAS----SLDQIGPLTRNVKDNAIVLEAISGAD 234 (485)
T ss_dssp HHHHHTTSCSEEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCT----TTCCEEEEESSHHHHHHHHHHHBSCC
T ss_pred HHHhhcCCCceeeeccCCcchhhhHHHhCCeeecCCCCcccCCCCCCccc----ccceeccccCCHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999987 89999999999999999999999999
Q ss_pred CCCCCCCCcc---------CCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHH
Q psy7560 421 KLPAYNFDKS---------VDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIKQFRLGYDVW 491 (507)
Q Consensus 421 ~~d~~~~~~~---------~~~~~lrig~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~G~~v~~~~~~p~~~~~~~~~ 491 (507)
+.|+...+.+ .+++++|||++.+. +...++|+++++++++++.|+++ ||+|++ +++|.+......|
T Consensus 235 ~~d~~~~~~~~~~~~~~~~~~~~~lrigv~~~~---~~~~~~~~v~~a~~~a~~~L~~~-G~~v~~-~~~p~~~~~~~~~ 309 (485)
T 3ip4_A 235 VNDSTSAPVDDVDFTSEIGKDIKGLKVALPKEY---LGEGVADDVKEAVQNAVETLKSL-GAVVEE-VSLPNTKFGIPSY 309 (485)
T ss_dssp TTCTTSCCCCCCCCSTTTTCCCTTCEEEEEGGG---GSTTSCHHHHHHHHHHHHHHHHT-TCEEEE-ECCTTGGGHHHHH
T ss_pred cccccccccCccchhhhhccCccCcEEEEECCc---ccCCCCHHHHHHHHHHHHHHHHC-CCEEEE-eCCCcHHHHHHHH
Confidence 8887654322 13588999999752 24578999999999999999996 999999 9999887777777
Q ss_pred HHHHhhc
Q psy7560 492 RYWVSKE 498 (507)
Q Consensus 492 ~~~~~~d 498 (507)
..++..|
T Consensus 310 ~~~~~~e 316 (485)
T 3ip4_A 310 YVIASSE 316 (485)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655544
No 2
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=100.00 E-value=3.4e-76 Score=625.41 Aligned_cols=292 Identities=24% Similarity=0.296 Sum_probs=270.8
Q ss_pred cCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCeeEEecCcHHHHHHHHHHHHHHHccCCCCCCCCCCccEEEecCCC
Q psy7560 187 ESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSKESTA 266 (507)
Q Consensus 187 ~s~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~~~~~~pL~GiP~~vKD~~~ 266 (507)
+|+.+|+++|++|++|++||+++|++||++.|+ +||++++++|+|+++|+++|+++++|+. .+|||||||+|||||+
T Consensus 1 ~~~~~l~~~~~~g~~s~~el~~a~l~ri~~~~~-lna~~~~~~~~Al~~A~~~d~~~~~g~~--~gpL~GvPi~vKD~~~ 77 (434)
T 2dc0_A 1 MDLLEAKRLLETGRTTPLALLEEALERAKAFQD-RNALAYLDEEAARKEALALTEELRRGQV--RGPLHGLPLTVKDLFP 77 (434)
T ss_dssp CCHHHHHHHHHTTSCCHHHHHHHHHHHHHHTGG-GCCEEEECHHHHHHHHHHHHHHHHTTCC--CSTTTTCEEEEETTSC
T ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-CcEEEEcCHHHHHHHHHHHHHHHhcCCC--CCCcCCeeEEEEeccc
Confidence 489999999999999999999999999999999 9999999999999999999999998876 5999999999999999
Q ss_pred CCCCcCCcCcccccCCCC-CCcHHHHHHHHHcCCeEEEccccCCcC-CCCCCCCCCCCCCCCCCCCCCCCCCCchhHHhh
Q psy7560 267 CKGLSNTLGLLARKGKKA-DADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGGEACLV 344 (507)
Q Consensus 267 v~G~~tt~Gs~~~~~~~~-~~da~~V~~L~~aGAii~GkTn~~e~~-~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaV 344 (507)
++|++||+||..+ +++ .+|+++|+||+++|||++||||||||+ +..+.|++||+|+||||+.++|||||||||++|
T Consensus 78 v~G~~tt~Gs~~~--~~~a~~dA~vV~rL~~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaaV 155 (434)
T 2dc0_A 78 VKGMPTRAGTKAP--LPPLPEEARAVRRLREAGALLFAKTNMHEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAV 155 (434)
T ss_dssp BTTBCCCTTCSSC--CCCCCSSCHHHHHHHHTTCEEEEEECCSGGGCCSSCCCTTTCCCBCSSCTTBBCCSSSHHHHHHH
T ss_pred cCCcccCCCCccc--CCCCCCCHHHHHHHHHCCCEEEEEeChhHHhcCCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHH
Confidence 9999999999999 667 899999999999999999999999999 999999999999999999999999999999999
Q ss_pred hcCCCceeeeccCCCcccccccccCcceeecCCCCccCCCCCCCCCCCCCCcceeccccCChhhHHHHHHHhcCCCCCCC
Q psy7560 345 SACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPA 424 (507)
Q Consensus 345 aag~~~~alGtDtgGSiR~PAa~~Gv~G~kPt~G~v~~~G~~p~~~~~~~~~~~~Gp~ar~v~D~~~~~~~l~~~~~~d~ 424 (507)
|+|++++|+|||||||||+||+||||||||||+|++|+.|++|.++ ++|++|||||||+|+++++++|.++ +.|+
T Consensus 156 Aag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~g~~~~~~----s~d~~Gp~arsv~D~a~~l~~l~g~-~~d~ 230 (434)
T 2dc0_A 156 ALGIGLASLGTDTGGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSR----STDHAGPLTRSVRDAHFLTEILAGE-SIPL 230 (434)
T ss_dssp HHTSSSCEEEECSSSTTHHHHHHHTCEEEECSTTSSCCTTSCCSCT----TTCCEEEEESSHHHHHHHHHHHHTS-CCCC
T ss_pred HcCCCceeeecCCChhhhhhHHhCCCEEEECCCCCCCCCCCCCCCC----ccCeeCcccCCHHHHHHHHHHHhCC-CCCc
Confidence 9999999999999999999999999999999999999999999987 9999999999999999999999998 6454
Q ss_pred CCCCccCCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHhhcCc
Q psy7560 425 YNFDKSVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIKQFRLGYDVWRYWVSKEKD 500 (507)
Q Consensus 425 ~~~~~~~~~~~lrig~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~G~~v~~~~~~p~~~~~~~~~~~~~~~d~~ 500 (507)
. +.+++|||++.+++ ...++|+++++++++++.|+++ |++|++ +++| +......|..++..|..
T Consensus 231 ~------~~~~lrig~~~~~~---~~~~~~~v~~a~~~a~~~L~~~-G~~v~~-~~~p-~~~~~~~~~~~~~~e~~ 294 (434)
T 2dc0_A 231 E------GVQNPVFGVPLDFL---EGRLGVEVRKAFTRLLEDLPAL-RAEVRE-VSLP-LEGVYEVYTRLVRYEAA 294 (434)
T ss_dssp C------CCCSCEEEECHHHH---TTCSCHHHHHHHHHHHHHTTTT-TCEEEE-CCCC-CTTHHHHHHHHHHHHHH
T ss_pred c------cccCCEEEEECccc---cCCCCHHHHHHHHHHHHHHHHC-CCEEEE-eCCC-cHHHHHHHHHHHHHHHH
Confidence 3 35789999987533 4568999999999999999996 999999 9988 76666666666555544
No 3
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Probab=100.00 E-value=9.1e-76 Score=628.55 Aligned_cols=298 Identities=24% Similarity=0.372 Sum_probs=276.5
Q ss_pred ccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCeeEEecCcHHHHHHHHHHHHHHHccCCCCCCCCCCccEEEec
Q psy7560 184 IVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSKE 263 (507)
Q Consensus 184 ~~~~s~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~~~~~~pL~GiP~~vKD 263 (507)
+.++|+.+|+++|++|++|++||+++|++||+++|+.+||++++++++|+++|+++|++ .+|||||||+|||
T Consensus 2 l~~~sa~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~--------~gpL~GvPi~vKD 73 (478)
T 3h0l_A 2 LWKKSLSELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLKER--------ELPLFGIPIAVKD 73 (478)
T ss_dssp CTTSCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHTCCCT--------TSTTTTCEEEEET
T ss_pred CCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCcCcEEEEeChHHHHHHHHhhchh--------cCCcCCceEEEEc
Confidence 45689999999999999999999999999999999999999999999999999998864 3899999999999
Q ss_pred CCCCCCCcCCcCcccccCCCCCCcHHHHHHHHHcCCeEEEccccCCcC-CCCCCCCCCCCCCCCCCCCCCCCCCCchhHH
Q psy7560 264 STACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGGEAC 342 (507)
Q Consensus 264 ~~~v~G~~tt~Gs~~~~~~~~~~da~~V~~L~~aGAii~GkTn~~e~~-~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaa 342 (507)
||+++|++||+||..+.++++.+|+++|+||+++|||++||||||||+ +.++.|++||+|+||||++++|||||||||+
T Consensus 74 ~~~~~G~~tt~Gs~~~~~~~~~~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaa 153 (478)
T 3h0l_A 74 NILVEGEKTTCASKILENFVAPYDATVIERLKKAGALIVGKTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAA 153 (478)
T ss_dssp TBCCTTSBCCTTCGGGTTCBCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCCTTCTTBCCCSSSHHHHH
T ss_pred CccCCCCCcCCcCHhhcCCCCCCCHHHHHHHHHCCCEEEEEeCchhhhcCCCCCCCCCCCcCCCccCCCCCCcchHHHHH
Confidence 999999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred hhhcCCCceeeeccCCCcccccccccCcceeecCCCCccCCCCCCCCCCCCCCcceeccccCChhhHHHHHHHhcCCCCC
Q psy7560 343 LVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKL 422 (507)
Q Consensus 343 aVaag~~~~alGtDtgGSiR~PAa~~Gv~G~kPt~G~v~~~G~~p~~~~~~~~~~~~Gp~ar~v~D~~~~~~~l~~~~~~ 422 (507)
+||+|++++|+|||||||||+||+||||||||||+|++|+.|++|.++ ++|++|||||||+|+++++++|.|+|+.
T Consensus 154 aVAag~~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~----~~d~~Gp~arsv~D~a~~l~vl~g~d~~ 229 (478)
T 3h0l_A 154 SVAVLSAPVSLGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFAS----SLDQIGVFGRRTEDVALVLEVISGWDEK 229 (478)
T ss_dssp HHHHTSSSCEEEECSSSTTHHHHHHHTCEEEECCTTSBCCTTBCCSCT----TTCCEEEEESSHHHHHHHHHHHBSCCTT
T ss_pred HHHCCCCceeeecCCCCcchhhhHHhCCeeEeCCCCcccCCCCCCCcc----CCCeecceeCCHHHHHHHHHHhcCCCcc
Confidence 999999999999999999999999999999999999999999999987 8999999999999999999999999998
Q ss_pred CCCCCCccC---------CCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHH
Q psy7560 423 PAYNFDKSV---------DLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIKQFRLGYDVWRY 493 (507)
Q Consensus 423 d~~~~~~~~---------~~~~lrig~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~G~~v~~~~~~p~~~~~~~~~~~ 493 (507)
|+...+.+. +++++|||++.+. ....++|+++++++++++.|+++ ||+|++ +++|.+......|..
T Consensus 230 d~~~~~~p~~~~~~~~~~~~~~lrIgv~~~~---~~~~~~p~v~~a~~~a~~~L~~~-G~~v~~-v~~p~~~~~~~~~~~ 304 (478)
T 3h0l_A 230 DSTSAKVPVPEWSEEVKKEVKGLKIGLPKEF---FEYELQPQVKEAFENFIKELEKE-GFEIKE-VSLPHVKYSIPTYYI 304 (478)
T ss_dssp CTTSCCCCCCCHHHHTTCCCTTCEEEEEGGG---GGSCCCHHHHHHHHHHHHHHHHT-TCEEEE-ECCTTGGGHHHHHHH
T ss_pred cccccccCccchhhhhccCCCCCEEEEECCc---ccCCCCHHHHHHHHHHHHHHHHC-CCEEEE-eCCCcHHHHHHHHHH
Confidence 876554321 4688999999753 24568999999999999999996 999999 999988777777766
Q ss_pred HHhhc
Q psy7560 494 WVSKE 498 (507)
Q Consensus 494 ~~~~d 498 (507)
++..|
T Consensus 305 ~~~~e 309 (478)
T 3h0l_A 305 IAPSE 309 (478)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
No 4
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*
Probab=100.00 E-value=3.2e-75 Score=628.79 Aligned_cols=288 Identities=24% Similarity=0.347 Sum_probs=266.8
Q ss_pred cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC---CCCeeEEecCcHHHHHHHHHHHHHHHccCCCCCCCCCCccE
Q psy7560 183 KIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVN---PYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPF 259 (507)
Q Consensus 183 ~~~~~s~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~---~~~na~~~~~~~~al~~A~~~d~~~~~~~~~~~~pL~GiP~ 259 (507)
++..+|+.+|+++|++|++|++||+++|++||+++| +.+||+++++++ |+++|+++|+++++|.. .+|||||||
T Consensus 7 ~~~~~~~~~l~~~l~~g~~s~~el~~a~l~ri~~~~~~~~~lna~~~~~~~-Al~~A~~~d~~~~~g~~--~gpL~GvPi 83 (503)
T 1m22_A 7 PYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD-ALKEAAERDRERRDGRL--RGPLHGIPL 83 (503)
T ss_dssp TTTTCCHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTT-HHHHHHHHHHHHHTTCC--CSTTTTCEE
T ss_pred CcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceEEEEECCHH-HHHHHHHHHHHHHcCCC--CCCcCCcee
Confidence 466789999999999999999999999999999999 999999999988 99999999999888776 599999999
Q ss_pred EEecCCCCCCCcCCcCcccccCCCCCCcHHHHHHHHHcCCeEEEccccCCcC-C-----CCCCCCCCCCCCCCCCCCCCC
Q psy7560 260 TSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-W-----SESRNMVYGQSNNPYNLCRTT 333 (507)
Q Consensus 260 ~vKD~~~v~G~~tt~Gs~~~~~~~~~~da~~V~~L~~aGAii~GkTn~~e~~-~-----~~~~n~~~G~~~NP~~~~~~~ 333 (507)
+|||||+++|++||+||..+.++++ +||++|+||+++|||++||||||||+ . .++.|++||+|+||||++|+|
T Consensus 84 ~vKD~~~v~G~~Tt~Gs~~~~~~~~-~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~~~n~~~G~t~NP~~~~~~p 162 (503)
T 1m22_A 84 LLKDNINAAPMATSAGSLALQGFRP-DDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSP 162 (503)
T ss_dssp EEETTBCCTTSCCCTTCGGGTTCCC-CCCHHHHHHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTSTTBCC
T ss_pred EeecccccCCCCcCCCCHhhcCCCC-CCcHHHHHHHHCCCEEEeccCHHHHhcccCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 9999999999999999999999999 99999999999999999999999998 3 468899999999999999999
Q ss_pred CCCCchhHHhhhcCCCceeeeccCCCcccccccccCcceeecCCCCccCCCCCCCCCCCCCCcceeccccCChhhHHHHH
Q psy7560 334 GASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYS 413 (507)
Q Consensus 334 GGSSgGsaaaVaag~~~~alGtDtgGSiR~PAa~~Gv~G~kPt~G~v~~~G~~p~~~~~~~~~~~~Gp~ar~v~D~~~~~ 413 (507)
||||||||++||+|++++|+|||||||||+||+||||||||||+|+||+.|++|++. ++|++|||||||+|+++++
T Consensus 163 GGSSgGsAaAVAag~~~~alGtDtgGSIRiPAa~cGvvGlKPT~Grvs~~G~~p~~~----sld~~Gp~arsv~D~a~~l 238 (503)
T 1m22_A 163 CGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISF----SQDTAGPMARSVADAAAVL 238 (503)
T ss_dssp CSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCT----TTCEEEEEESSHHHHHHHH
T ss_pred CccHHHHHHHHHcCCCceeeecCCCchhhhhHHHhCceEEECCCCCcCCCCcCCccC----CCCeeCcccCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987 8999999999999999999
Q ss_pred HHhcCCCCCCCCCCCcc-------------CCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Q psy7560 414 KCLILPDKLPAYNFDKS-------------VDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSH 480 (507)
Q Consensus 414 ~~l~~~~~~d~~~~~~~-------------~~~~~lrig~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~G~~v~~~~~ 480 (507)
++|.|+|+.|+...+.+ ..++++|||++.+. . .++++++++++++++.|+++ |++|++ ++
T Consensus 239 ~vl~g~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~lrIgv~~~~----~-~~~~~v~~a~~~a~~~L~~~-G~~v~~-~~ 311 (503)
T 1m22_A 239 TAIAGRDDADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTP----L-LKYRGMPPLIEQAATELRRA-GAVVVP-VE 311 (503)
T ss_dssp HHHCCCCTTCGGGGGCTTCCCCCGGGGCCTTTTTTCEEEEECSG----G-GGSTTHHHHHHHHHHHHHHT-TCEEEE-EC
T ss_pred HHHcCCCCCCccccccccccccchhhhccccCCCCCEEEEECcc----c-cCCHHHHHHHHHHHHHHHHc-CCEEEE-eC
Confidence 99999998776543221 13578999999752 2 37999999999999999996 999999 99
Q ss_pred CCchH
Q psy7560 481 IKQFR 485 (507)
Q Consensus 481 ~p~~~ 485 (507)
+|.+.
T Consensus 312 ~p~~~ 316 (503)
T 1m22_A 312 LPNQG 316 (503)
T ss_dssp CTTTT
T ss_pred CCcHH
Confidence 88654
No 5
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=100.00 E-value=1.4e-74 Score=617.99 Aligned_cols=292 Identities=28% Similarity=0.415 Sum_probs=271.0
Q ss_pred cCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCeeEEecCcHHHHHHHHHHHHHHHccCCCCCCCCCCccEEEecCCC
Q psy7560 187 ESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSKESTA 266 (507)
Q Consensus 187 ~s~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~~~~~~pL~GiP~~vKD~~~ 266 (507)
|++.+|+++|++|++|++||+++|++||+++|+.+||+++++ ++|+++|+++|++ .|||||||+|||||+
T Consensus 1 ~~a~~l~~~~~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~-~~al~~A~~~d~~---------~pL~GvPi~vKD~~~ 70 (471)
T 3kfu_E 1 MLAHEIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLN-ERLLEEAEAVDPG---------LPLAGLVVAVKDNIA 70 (471)
T ss_dssp -CHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEEC-CTTTHHHHTSCCS---------CTTTTCEEEEETTBC
T ss_pred CcHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEEeC-HHHHHHHHhcCcc---------CCcCCCeEEEECCcc
Confidence 689999999999999999999999999999999999999999 9999999988853 399999999999999
Q ss_pred CCCCcCCcCcccccCCCCCCcHHHHHHHHHcCCeEEEccccCCcC-CCCCCCCCCCCCCCCCCCCCCCCCCCchhHHhhh
Q psy7560 267 CKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGGEACLVS 345 (507)
Q Consensus 267 v~G~~tt~Gs~~~~~~~~~~da~~V~~L~~aGAii~GkTn~~e~~-~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVa 345 (507)
++|++||+||..+.++++.+|+++|+||+++|||++||||||||+ +.++.|++||+|+||||++++|||||||||++||
T Consensus 71 ~~G~~tt~Gs~~~~~~~~~~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVA 150 (471)
T 3kfu_E 71 TRGLRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALA 150 (471)
T ss_dssp CTTSCCCTTCSTTTTCCCSSCCHHHHHHHTTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHH
T ss_pred cCCccccccCHhHcCCCCCCChHHHHHHHHCCCEEEeecCcCchhcCCCCCCCCCCCcCCCCccCcCCCCCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred cCCCceeeeccCCCcccccccccCcceeecCCCCccCCCCCCCCCCCCCCcceeccccCChhhHHHHHHHhcCCCCCCCC
Q psy7560 346 ACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPAY 425 (507)
Q Consensus 346 ag~~~~alGtDtgGSiR~PAa~~Gv~G~kPt~G~v~~~G~~p~~~~~~~~~~~~Gp~ar~v~D~~~~~~~l~~~~~~d~~ 425 (507)
+|++++|+|||||||||+||+||||||||||+|++|+.|++|.+. ++|++|||||||+|+++++++|.|+|+.|+.
T Consensus 151 ag~~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~----~~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~ 226 (471)
T 3kfu_E 151 ADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYAS----SLDQIGPMARSVRDLALLMDAAAGPDPLDAT 226 (471)
T ss_dssp TTSCSEEEEEESSSTTHHHHHHTTCEEEECCTTSSCCTTBCCSCT----TTCEEEEEESSHHHHHHHHHHHCSCCTTCTT
T ss_pred CCCCccccccCCCCccccChhhcCceeeeCCCCCccCCCCCCccc----ccCeecceeCCHHHHHHHHHHhcCCCccccc
Confidence 999999999999999999999999999999999999999999987 8999999999999999999999999988876
Q ss_pred CCCcc--------CCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHhh
Q psy7560 426 NFDKS--------VDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIKQFRLGYDVWRYWVSK 497 (507)
Q Consensus 426 ~~~~~--------~~~~~lrig~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~G~~v~~~~~~p~~~~~~~~~~~~~~~ 497 (507)
..+.+ .+.+++|||++.+. . ..++|+++++++++++.|+++ ||+|++ +++|.+......|..++..
T Consensus 227 ~~~~~~~~~~~~~~~~~~lrIgv~~~~---~-~~~~p~v~~a~~~a~~~L~~~-G~~v~~-v~~p~~~~~~~~~~~~~~~ 300 (471)
T 3kfu_E 227 SLDLPPRFQEALEGPLPPLRLGVVREA---L-AGNSPGVERALEEALKVFREL-GLSVRE-VSWPSLPQALAAYYILAPA 300 (471)
T ss_dssp CCCCCCCTTCCSCCCCSSCEEEEEGGG---T-TTCCHHHHHHHHHHHHHHHTT-TCEEEE-ECCTTGGGHHHHHHHHHHH
T ss_pred ccCCCcchhhhhccCCCCCEEEEECCc---c-CCCCHHHHHHHHHHHHHHHHc-CCeeee-ecCccHHHHHHHHHHHHHH
Confidence 54322 13678999999762 2 578999999999999999996 999999 9999888777777666555
Q ss_pred c
Q psy7560 498 E 498 (507)
Q Consensus 498 d 498 (507)
|
T Consensus 301 e 301 (471)
T 3kfu_E 301 E 301 (471)
T ss_dssp H
T ss_pred H
Confidence 4
No 6
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Probab=100.00 E-value=1.1e-73 Score=615.69 Aligned_cols=296 Identities=27% Similarity=0.374 Sum_probs=267.2
Q ss_pred cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCeeEEecCcHHHHHHHHHHHHHHHccCCCCCCCCCCccEEEe
Q psy7560 183 KIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSK 262 (507)
Q Consensus 183 ~~~~~s~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~~~~~~pL~GiP~~vK 262 (507)
++.. |+.+|+++|++|++|++||+++|++||++.|+.+||++++++++|+++|++ | . +|||||||+||
T Consensus 5 ~~~~-~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~-d-------~---gpL~GvPi~vK 72 (493)
T 3a2q_A 5 DLWQ-DATAQAELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESEL-A-------S---GPFAGVPYLLK 72 (493)
T ss_dssp CTTS-CHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHH-C-------C---STTTTCEEEEE
T ss_pred hhhh-hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCeEEecCHHHHHHHhhh-c-------C---CCcCCcEEEEe
Confidence 4566 999999999999999999999999999999999999999999999999988 7 1 89999999999
Q ss_pred cCC-CCCCCcCCcCccccc--CCCCCCcHHHHHHHHHcCCeEEEccccCCcC-CCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy7560 263 EST-ACKGLSNTLGLLARK--GKKADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSG 338 (507)
Q Consensus 263 D~~-~v~G~~tt~Gs~~~~--~~~~~~da~~V~~L~~aGAii~GkTn~~e~~-~~~~~n~~~G~~~NP~~~~~~~GGSSg 338 (507)
||| +++|++||+||..+. ++++.+||++|+||+++|||++||||||||+ +.++.|++||+|+||||++|+||||||
T Consensus 73 D~~~~v~G~~Tt~Gs~~~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSg 152 (493)
T 3a2q_A 73 DLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQVTTEPEAWGATRNPWNLGRSVGGSSG 152 (493)
T ss_dssp SSSSCCTTSBCCTTCHHHHHHTCBCSSCCHHHHHHHHHTCEEEEEECCSGGGCSSSCCCTTTCCCCBTTBTTBCCCSSSH
T ss_pred cCCcCcCCCcccccChhhhhcCCCCCCCHHHHHHHHHCCCceEEEcChhhhhcCCCCCCCCCCCCCCCCCCCCCCCcCcH
Confidence 999 999999999999999 9999999999999999999999999999999 999999999999999999999999999
Q ss_pred hhHHhhhcCCCceeeeccCCCcccccccccCcceeecCCCCccCCCC--C-CCCCCCCCCcceeccccCChhhHHHHHHH
Q psy7560 339 GEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGI--Y-GRDGKEGKSMLAAGPIVKHAEDLLPYSKC 415 (507)
Q Consensus 339 GsaaaVaag~~~~alGtDtgGSiR~PAa~~Gv~G~kPt~G~v~~~G~--~-p~~~~~~~~~~~~Gp~ar~v~D~~~~~~~ 415 (507)
|||++||+|++++|+|||||||||+||+||||||||||+|+||..|+ . +.+. ++|++|||||||+|+++++++
T Consensus 153 GsAAAVAaG~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~g~~~~~~~~~----sld~~Gp~arsv~D~a~~l~~ 228 (493)
T 3a2q_A 153 GSGAAVAAALSPVAHGNDAAGAVRIPASVCGVVGLKPTRGRISPGPLVTDSDNVA----GAAHEGLFARSVRDIAALLDV 228 (493)
T ss_dssp HHHHHHHTTSCSEEEEEESSSTTHHHHHHHTSEEEECSTTSBCCCSSCCHHHHHH----TTCEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHcCCCceeeecCCCcccccchhhcCcceEEcCCCccCCCCCcccccccc----cCceecCccCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987 4 6655 899999999999999999999
Q ss_pred hcCCCCCCCCCCCcc---------CCCCCcEEEEECCCCCCC-CCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCCchH
Q psy7560 416 LILPDKLPAYNFDKS---------VDLAKLKVFYVEEPGDMK-VSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIKQFR 485 (507)
Q Consensus 416 l~~~~~~d~~~~~~~---------~~~~~lrig~~~~~g~~~-~~~~~~~~~~~~~~~~~~L~~~~G~~v~~~~~~p~~~ 485 (507)
|.|+|+.|++..+.+ .+.+++|||++.+++ + ...++++++++++++++.|+++ |++|++ +++|.+.
T Consensus 229 l~g~d~~d~~~~~~p~~~~~~~~~~~~~~lrIgv~~~~~--~~~~~~~~~v~~a~~~a~~~L~~~-G~~v~~-~~~~~~~ 304 (493)
T 3a2q_A 229 VSGHRPGDTFCAPTASRPYAQGISENPGSLRVGVLTHNP--VGDFALDPECAAAARGAAAALAAL-GHDVND-AYPEALG 304 (493)
T ss_dssp HBSCCTTCSCCCCCCSSCHHHHTTSCCCSCEEEECCSCT--TCSSCCCHHHHHHHHHHHHHHHHT-TCEEEE-CCCGGGG
T ss_pred HcCCCCCCcccccCCCcchhhhcccCCCCCEEEEECCcc--ccCCCCCHHHHHHHHHHHHHHHHC-CCEEEE-eCCCccC
Confidence 999998887654322 136789999987642 1 3468999999999999999996 999999 9987443
Q ss_pred --HHHHHHHHHHhhc
Q psy7560 486 --LGYDVWRYWVSKE 498 (507)
Q Consensus 486 --~~~~~~~~~~~~d 498 (507)
.....|..++..|
T Consensus 305 ~~~~~~~~~~~~~~e 319 (493)
T 3a2q_A 305 DRSFLKDYSTICDVA 319 (493)
T ss_dssp CCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 3444555444444
No 7
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*
Probab=100.00 E-value=7e-74 Score=623.06 Aligned_cols=311 Identities=24% Similarity=0.346 Sum_probs=276.6
Q ss_pred cccccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCeeEEecCcHHHHHHHHHHHHHHHccCCCCCCCCCCccEE
Q psy7560 181 KNKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFT 260 (507)
Q Consensus 181 ~~~~~~~s~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~~~~~~pL~GiP~~ 260 (507)
.+++..+|+.+|+++|++|++|++||+++|++||++.|+.+||++++.++ ++++|+++++ .+|||||||+
T Consensus 65 ~~~i~~~~~~~l~~~l~~g~~s~~ev~~a~l~ri~~~~~~~na~~~~~~~-a~~~a~~~~~---------~gpL~GvPi~ 134 (573)
T 3ppm_A 65 SEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTD-CETQLSQAPR---------QGLLYGVPVS 134 (573)
T ss_dssp HHHHHHSCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTT-HHHHHHHCCT---------TCTTTTCEEE
T ss_pred hhhhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCEEEEECHH-HHHHHHhhhh---------cCCcCCCeEE
Confidence 45688999999999999999999999999999999999999999998755 5555544432 3899999999
Q ss_pred EecCCCCCCCcCCcCcccccCCCCCCcHHHHHHHHHcCCeEEEccccCCcC-CCCCCCCCCCCCCCCCCCCCCCCCCCch
Q psy7560 261 SKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGG 339 (507)
Q Consensus 261 vKD~~~v~G~~tt~Gs~~~~~~~~~~da~~V~~L~~aGAii~GkTn~~e~~-~~~~~n~~~G~~~NP~~~~~~~GGSSgG 339 (507)
|||||+++|++||+||..+.++++.+||++|++|+++|||++||||||||+ +.++.|++||+|+||||++++|||||||
T Consensus 135 vKD~~~~~G~~tt~Gs~~~~~~~~~~da~vV~~L~~aGAv~~gKTn~pe~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgG 214 (573)
T 3ppm_A 135 LKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGG 214 (573)
T ss_dssp EETTBCCBTCCCCTTCGGGTTCCBSSCCHHHHHHHHTTCEEEEEECCCTTSCSSSCEETTTEECCCTTCTTBCCCSSSHH
T ss_pred EEcccCCCCCCcCCcChhhcCCCCCcchHHHHHHHHCCCEEEEecCCccccccCCCCCCCCCCcCCCCCCCCCCCCCCch
Confidence 999999999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred hHHhhhcCCCceeeeccCCCcccccccccCcceeecCCCCccCCCCCCCCCCCCCCcceeccccCChhhHHHHHHHhcCC
Q psy7560 340 EACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILP 419 (507)
Q Consensus 340 saaaVaag~~~~alGtDtgGSiR~PAa~~Gv~G~kPt~G~v~~~G~~p~~~~~~~~~~~~Gp~ar~v~D~~~~~~~l~~~ 419 (507)
||++||+|++++|+|||||||||+||+||||||||||+||+|..|++|.+.+....+|++|||||||+|+++++++|.+.
T Consensus 215 saaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~~~~~~~~~~~~~~Gp~arsv~D~a~~l~~l~~~ 294 (573)
T 3ppm_A 215 EGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCE 294 (573)
T ss_dssp HHHHHHTTSCSEEEEEESSSTTHHHHHHHTCEEEECCGGGSCCTTBCCSCCSCCSSCCEEEEEESSHHHHHHHHHHHSSH
T ss_pred HHHHHHcCCCcEEEecCCCcchhhhhHHhCeeEEeCCCCcccCCCCCCcccccCcccccccceeCcHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999988644456899999999999999999999987
Q ss_pred CC--CCCCCCCcc------CCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCCchHHHHH-H
Q psy7560 420 DK--LPAYNFDKS------VDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIKQFRLGYD-V 490 (507)
Q Consensus 420 ~~--~d~~~~~~~------~~~~~lrig~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~G~~v~~~~~~p~~~~~~~-~ 490 (507)
++ .|+...+.+ ...+++|||++.+++ +..++|+++++++++++.|+++ ||+|++ +++|.+.++.. +
T Consensus 295 d~~~~d~~~~~~~~~~~~~~~~~~lrigv~~~~~---~~~~~p~v~~a~~~a~~~L~~~-G~~v~~-~~~p~~~~~~~~~ 369 (573)
T 3ppm_A 295 HLFTLDPTVPPLPFREEVYRSSRPLRVGYYETDN---YTMPSPAMRRALIETKQRLEAA-GHTLIP-FLPNNIPYALEVL 369 (573)
T ss_dssp HHHHHCTTSCCCCCCHHHHTCCCCCEEEECSCCS---SSCCCHHHHHHHHHHHHHHHHT-TCEEEE-CCCTTHHHHHHTH
T ss_pred cccccCCCCCccccchhhcccCCCCEEEEEcccC---CCCCCHHHHHHHHHHHHHHHHC-CCEEEE-ecCccHHHHHHHH
Confidence 52 233322211 236899999998765 4578999999999999999996 999999 99999888876 4
Q ss_pred HHHHHhhcCchhhhhc
Q psy7560 491 WRYWVSKEKDDFFSDH 506 (507)
Q Consensus 491 ~~~~~~~d~~~~~~~~ 506 (507)
+...+..|+...+.++
T Consensus 370 ~~~~~~~dg~~~~~~~ 385 (573)
T 3ppm_A 370 STGGLFSDGGRSFLQN 385 (573)
T ss_dssp HHHHHTTBTTHHHHGG
T ss_pred HHHHHhhhhHHHHHHH
Confidence 5567888887766543
No 8
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*
Probab=100.00 E-value=4.6e-73 Score=608.38 Aligned_cols=291 Identities=24% Similarity=0.337 Sum_probs=263.8
Q ss_pred cccccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCeeEEecCcHHHHHHHHHHHHHHHccCCCCCCCCCCccEE
Q psy7560 181 KNKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFT 260 (507)
Q Consensus 181 ~~~~~~~s~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~~~~~~pL~GiP~~ 260 (507)
+.++..+|+.+| |++|++|++||+++|++||+++|+.+||++++++++|+ |+ . +|||||||+
T Consensus 4 ~~~~~~~s~~~l---i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~al------d~------~---gpL~GvPi~ 65 (476)
T 2gi3_A 4 DLDFRKLTIEEC---LKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSV------EK------K---GKFWGIPVA 65 (476)
T ss_dssp CSCGGGCCHHHH---TTSCHHHHTTHHHHHHHHHHHHHHHHCCEEEECCCCCC------CC------C---STTTTCEEE
T ss_pred ccccccCCHHHH---HHcCCCCHHHHHHHHHHHHHHhCCceeEEEecChhhhh------hc------c---CCcCCceEE
Confidence 345777899999 99999999999999999999999999999999888776 22 1 799999999
Q ss_pred EecCCCCCCCcCCcCcccccCCCCCCcHHHHHHHHHcCCeEEEccccCCcC-CCCCCCCCCCCCCCCCCCCCCCCCCCch
Q psy7560 261 SKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGG 339 (507)
Q Consensus 261 vKD~~~v~G~~tt~Gs~~~~~~~~~~da~~V~~L~~aGAii~GkTn~~e~~-~~~~~n~~~G~~~NP~~~~~~~GGSSgG 339 (507)
|||||+++|++||+||..+.++++.+||++|+||++||||++||||||||+ +.++.|++||+|+||||+.|+|||||||
T Consensus 66 vKD~~~v~G~~Tt~Gs~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgG 145 (476)
T 2gi3_A 66 IKDNILTLGMRTTCASRILENYESVFDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGG 145 (476)
T ss_dssp EETTBCCSSSCCCTTCGGGTTCCCCSCCHHHHHHHHHTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHH
T ss_pred EEcCccCCCCccCccChhhcCCCCCCChHHHHHHHHCCCEEEEecCchhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHH
Confidence 999999999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred hHHhhhcCCCceeeeccCCCcccccccccCcceeecCCCCccCCCCCCCCCCCCCCcceeccccCChhhHHHHHHHhcCC
Q psy7560 340 EACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILP 419 (507)
Q Consensus 340 saaaVaag~~~~alGtDtgGSiR~PAa~~Gv~G~kPt~G~v~~~G~~p~~~~~~~~~~~~Gp~ar~v~D~~~~~~~l~~~ 419 (507)
||++||+|++++|+|||||||||+||+||||||||||+|+||+.|++|.+. ++|++|||||||+|+++++++|.|+
T Consensus 146 sAaAVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~p~~~----sld~~Gp~arsv~D~a~~l~~l~g~ 221 (476)
T 2gi3_A 146 SAAAVSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFAS----SLDQIGPITKTVRDAAILMEIISGR 221 (476)
T ss_dssp HHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECCTTSBCCTTBCCSCT----TTCEEEEEESSHHHHHHHHHHHBSC
T ss_pred HHHHHHcCCCceEeecCCCchhhhhHHHcCCeEEeCCCCcCCCCCCCCccc----CCCeeeeeeCCHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999999999999999999987 9999999999999999999999999
Q ss_pred CCCCCCCCCccC--------CCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHH
Q psy7560 420 DKLPAYNFDKSV--------DLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIKQFRLGYDVW 491 (507)
Q Consensus 420 ~~~d~~~~~~~~--------~~~~lrig~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~G~~v~~~~~~p~~~~~~~~~ 491 (507)
|+.|+...+.+. ..+++|||++.+. +...++++++++++++++.|+++ |++|++ +++|.+......|
T Consensus 222 d~~d~~~~~~p~~~~~~~~~~~~~lrig~~~~~---~~~~~~~~v~~a~~~a~~~L~~~-G~~v~~-~~~p~~~~~~~~~ 296 (476)
T 2gi3_A 222 DENDATTVNRKVDFLSEIEEGVSGMKFAVPEEI---YEHDIEEGVSERFEEALKLLERL-GAKVER-VKIPHIKYSVATY 296 (476)
T ss_dssp BTTBTTCCSCCCCSSTTTTSCCTTCEEEEEGGG---GGSCCCHHHHHHHHHHHHHHHHT-TCEEEE-ECCTTGGGHHHHH
T ss_pred CCCCccccCCCcchhhhhhcCCCCCEEEEECcc---ccCCCCHHHHHHHHHHHHHHHHC-CCEEEE-eCCCchHHHHHHH
Confidence 887766543221 3578999999752 23568999999999999999996 999999 9998776666555
Q ss_pred HHHHhhc
Q psy7560 492 RYWVSKE 498 (507)
Q Consensus 492 ~~~~~~d 498 (507)
..++..|
T Consensus 297 ~~~~~~e 303 (476)
T 2gi3_A 297 YVIAPAE 303 (476)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544433
No 9
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Probab=100.00 E-value=1.7e-70 Score=578.24 Aligned_cols=279 Identities=19% Similarity=0.215 Sum_probs=249.2
Q ss_pred cCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCeeEEecCcHHHHHHHHHHHHHHHccCCCCCCCCCCccEEEecCCC
Q psy7560 187 ESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSKESTA 266 (507)
Q Consensus 187 ~s~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~al~~A~~~d~~~~~~~~~~~~pL~GiP~~vKD~~~ 266 (507)
+|+.+|+++|++|++|++||+++|++||++.|+.+||+++++++++ + .. .+|||||||+|||||+
T Consensus 2 ~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~a-~------------~~--~gpL~GvPi~vKD~~~ 66 (414)
T 1o9p_A 2 ISLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSAR-A------------QA--SGPLRGIAVGIKDIID 66 (414)
T ss_dssp CCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTCC-C------------CS--SSTTTTCEEEEETTBC
T ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCccccEEEEeCHHHh-c------------cc--CCCcCCCEEEEEcccc
Confidence 6899999999999999999999999999999999999999987766 2 12 4899999999999999
Q ss_pred CCCCcCCcCcccccCCCCCCcHHHHHHHHHcCCeEEEccccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHhhhc
Q psy7560 267 CKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELLWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSA 346 (507)
Q Consensus 267 v~G~~tt~Gs~~~~~~~~~~da~~V~~L~~aGAii~GkTn~~e~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVaa 346 (507)
++|++||+||..+.++++.+||++|+||+++|||++||||||||+. .|+ |+|+||||++|+|||||||||++||+
T Consensus 67 v~G~~tt~Gs~~~~~~~~~~dA~~V~rL~~aGAii~GKTn~~Efa~---~n~--G~t~NP~~~~~~pGGSSgGsAaaVAa 141 (414)
T 1o9p_A 67 TANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFAS---RDP--TATLNPHNTGHSPGGASSGSAAAVGA 141 (414)
T ss_dssp CSSSCCCTTSGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCCGGGS---SCC--CSCCBTTBTTBCCCSSSHHHHHHHHT
T ss_pred cCCcccCcCCHhhccCCCCCCHHHHHHHHHCCCEEEEecCCchhhc---CCC--CCCCCCCCCCCCCCcchHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999994 344 99999999999999999999999999
Q ss_pred CCCceeeeccCCCcccccccccCcceeecCCCCccCCCCCCCCCCCCCCcceeccccCChhhHHHHHHHhcCCCCCCCCC
Q psy7560 347 CGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPAYN 426 (507)
Q Consensus 347 g~~~~alGtDtgGSiR~PAa~~Gv~G~kPt~G~v~~~G~~p~~~~~~~~~~~~Gp~ar~v~D~~~~~~~l~~~~~~d~~~ 426 (507)
|++++|+|||||||||+||+||||||||||+|++|+.|++|+++ ++|++|||||||+|+++++++|.+++. +.
T Consensus 142 g~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~~~~~----s~d~~Gp~arsv~D~a~~~~~l~g~~~--~~- 214 (414)
T 1o9p_A 142 GMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSW----ALDTVGLFGARAEDLARGLLAMTGRSE--FS- 214 (414)
T ss_dssp TSCSEEEEEESSSTTHHHHHHHTCEEEECSTTSSCCTTBCCSCT----TTCEEEEEESSHHHHHHHHHHHHCCGG--GS-
T ss_pred CCCceEEeeCCchhhhHhHHHhCCeeEECCCCCCCCCCCCCCCC----ccCeeccccCCHHHHHHHHHHhcCCCc--cc-
Confidence 99999999999999999999999999999999999999999987 999999999999999999999999752 11
Q ss_pred CCccCCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCCch-HHHHHHHHHHHhhcC
Q psy7560 427 FDKSVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIKQF-RLGYDVWRYWVSKEK 499 (507)
Q Consensus 427 ~~~~~~~~~lrig~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~G~~v~~~~~~p~~-~~~~~~~~~~~~~d~ 499 (507)
...+.+++|||++.+++ +..++|+++++++++++.|+++ |++|++ +++|.. ......+..++..|.
T Consensus 215 --~~~~~~~lrig~~~~~~---~~~~~~~v~~a~~~a~~~L~~~-G~~v~~-~~~~~~~~~~~~~~~~~~~~e~ 281 (414)
T 1o9p_A 215 --GIVPAKAPRIGVVRQEF---AGAVEPAAEQGLQAAIKAAERA-GASVQA-IDLPEAVHEAWRIHPIIQDFEA 281 (414)
T ss_dssp --SCCCCSSCEEEECCCGG---GCCCCHHHHHHHHHHHHHHHHT-TCEEEE-CCCCHHHHHHHHHHHHHHHHHH
T ss_pred --cccCCCCCEEEEECccc---cCCCCHHHHHHHHHHHHHHHHC-CCEEEE-ecCcchHHHHHHHHHHHHHHHH
Confidence 12246789999987643 4578999999999999999996 999999 998753 333344444444444
No 10
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A
Probab=100.00 E-value=1.5e-69 Score=585.62 Aligned_cols=301 Identities=22% Similarity=0.305 Sum_probs=260.0
Q ss_pred cccccCHHHHHHHHHcCCCCH-HHHHHHHHHHHHHhCCCCeeEE-ecCcHHHHHHHHHHHHH---------HHccCCCCC
Q psy7560 183 KIVLESATQIAKKIRNKNITS-VEVVQAFIERIEQVNPYLNAMV-DTRYTEALEEAKAADQK---------IALEEDISD 251 (507)
Q Consensus 183 ~~~~~s~~~l~~~l~~g~~t~-~ev~~~~l~ri~~~~~~~na~~-~~~~~~al~~A~~~d~~---------~~~~~~~~~ 251 (507)
+-+.+++.++...|.+++++. +++++.+++++++.++..|+++ .+.++++ .++.+.|+. ..++.. .
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~g~~--~ 85 (521)
T 3a1k_A 9 KAIDAAARHYGITLDKTARLEWPALIDGALGSYDVVDQLYADEATPPTTSRE-HAVPSASENPLSAWYVTTSIPPTS--D 85 (521)
T ss_dssp HHHHHHHHHTTCCCCTTHHHHHHHHHHHHTHHHHHHHHHHHHHSCCCCCCCC-EECCCTTTCTTSCEEEEEEECCSS--C
T ss_pred HHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHhhhcccccccCchhh-hhccccccchhhhhHHHHhhcCCC--C
Confidence 344568889999999999999 9999999999999887665544 4455555 445444441 112344 5
Q ss_pred CCCCCccEEEecCCCCCCCcCCcCcccccCCCCCCcHHHHHHHHHcCCeEEEccccCCcC-CCCCCCCCCCCCCCCCCCC
Q psy7560 252 KPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELL-WSESRNMVYGQSNNPYNLC 330 (507)
Q Consensus 252 ~pL~GiP~~vKD~~~v~G~~tt~Gs~~~~~~~~~~da~~V~~L~~aGAii~GkTn~~e~~-~~~~~n~~~G~~~NP~~~~ 330 (507)
+|||||||+|||||+++|++||+||..+.++++.+||++|+||++||||++||||||||+ +.++.|++||+|+||||++
T Consensus 86 gpL~GvPi~vKD~i~v~G~~Tt~Gs~~~~~~~~~~DA~vV~rLr~AGAvilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~ 165 (521)
T 3a1k_A 86 GVLTGRRVAIKDNVTVAGVPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAGKAVCEDLCFSGSSFTPASGPVRNPWDRQ 165 (521)
T ss_dssp CTTTTCEEEEETTBCCTTSCBCTTCTTTTTBCCSSCCHHHHHHHHTTCEEEEEECCCGGGCCSSSSCCTTCCCEETTEEE
T ss_pred CCCCCCEEEEEcCcccCCcccCCCChhhcCCCCCCchHHHHHHHHCCCEEEEeeChhhHhhCCCCCCCCCCCcCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred CCCCCCCchhHHhhhcCCCceeeeccCCCcccccccccCcceeecCCCCccCCCCCCCCCCCCCCcceeccccCChhhHH
Q psy7560 331 RTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLL 410 (507)
Q Consensus 331 ~~~GGSSgGsaaaVaag~~~~alGtDtgGSiR~PAa~~Gv~G~kPt~G~v~~~G~~p~~~~~~~~~~~~Gp~ar~v~D~~ 410 (507)
|+|||||||||++||+|++++|+|||||||||+||+||||||||||+|+||+.|++|+++ ++|++|||||||+|++
T Consensus 166 ~~pGGSSgGSAAAVAag~~~~alGtDtgGSIR~PAa~cGvvGlKPT~Grvs~~G~~p~~~----sld~~Gp~aRsv~D~a 241 (521)
T 3a1k_A 166 REAGGSSGGSAALVANGDVDFAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIER----TIDHLGPITRTVHDAA 241 (521)
T ss_dssp EECCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECSTTTSCCTTBCCSCG----GGCEEEEEESSHHHHH
T ss_pred CCCCCCCchHHHHHhcCCcceecccCCCCCCCcChHHcCCeeEecCCCcCCCCCCCCccc----ccCeeCceeCcHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987 9999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCC---c-------cCCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Q psy7560 411 PYSKCLILPDKLPAYNFD---K-------SVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSH 480 (507)
Q Consensus 411 ~~~~~l~~~~~~d~~~~~---~-------~~~~~~lrig~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~G~~v~~~~~ 480 (507)
+++++|.|+|+.|+.... . ..+++++|||++.+. +....++++++++++++++.|+++ |++|++ ++
T Consensus 242 ~~l~vlag~d~~D~~~~~~~~~~~~~~~l~~~~~~lrIgv~~~~--~~~~~~~~~v~~a~~~a~~~L~~~-Ga~v~e-v~ 317 (521)
T 3a1k_A 242 LMLSVIAGRDGNDPRQADSVEAGDYLSTLDSDVDGLRIGIVREG--FGHAVSQPEVDDAVRAAAHSLTEI-GCTVEE-VN 317 (521)
T ss_dssp HHHHHHCSCCSSCTTSCTTCCCCCSSTTTTSCCTTCEEEEEGGG--SCCSSSCHHHHHHHHHHHHGGGGG-TCEEEE-EC
T ss_pred HHHHHHhCCCCCCccccccCCCcchhhhhccCccCcEEEEECcc--ccccCCCHHHHHHHHHHHHHHHHC-CCEEEE-eC
Confidence 999999999887765421 1 013578999998752 112357999999999999999996 999999 99
Q ss_pred CCchHHHHHHHHHH
Q psy7560 481 IKQFRLGYDVWRYW 494 (507)
Q Consensus 481 ~p~~~~~~~~~~~~ 494 (507)
+|.+.....+|..+
T Consensus 318 ~p~~~~~~~~~~~~ 331 (521)
T 3a1k_A 318 IPWHLHAFHIWNVI 331 (521)
T ss_dssp CTHHHHHHHHHHHH
T ss_pred CCchHhHHHHHHHH
Confidence 99776665555543
No 11
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Probab=99.74 E-value=2.3e-18 Score=185.08 Aligned_cols=113 Identities=12% Similarity=0.224 Sum_probs=99.0
Q ss_pred HHHHHhhccCc-hHHHHHHHHHHHHHHHHHHh-cCCCEEEeCCCCCCCCCCcccccc---------------C-cccccc
Q psy7560 3 KILCSLCRMVP-SDQWAKEHTEILKTKLTELL-GDNGVLVFPAAPESAPYHYATFFR---------------P-YNFTYW 64 (507)
Q Consensus 3 ~~~~~~~~~~~-~~~~a~~~r~~~~~~~~~~f-~~~Dvll~Pt~~~~a~~~~~~~~~---------------~-~~~~~t 64 (507)
.++..+..++. +|.++++.|.+++++|.++| +++|+||+||+|.+||+++..... . ....||
T Consensus 346 ~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 425 (493)
T 3a2q_A 346 EMVKRADQVTGRAFAACVDELRYYAGKVERWWEAGWDLLILPTVTRQTPEIGELMLAKGTDLEGRQSAFISGSLQMLAFT 425 (493)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESCSSCCCBTTTTCCCTTCCCCSSCGGGSHHHHHHHTTT
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCCCCCCCcccccccccccccccchhhhhhhhhhccc
Confidence 45566677777 99999999999999999999 999999999999999998753211 0 013589
Q ss_pred ccccccCCCeEEeccCcCCCCCceeEEEEcCCCCcHHHHHHHHHHHhcccc
Q psy7560 65 ALFNILDFPVTNVPVGLDGKGLPLGDRVFFSTAGTVTGVRLDSIPEQARRF 115 (507)
Q Consensus 65 ~~~Nl~G~PaisvP~g~~~~GLPvGvQlvg~~~~D~~lL~~a~~~E~~~~~ 115 (507)
.+||++|+|++|||+|++.+||||||||+|++++|.+||++|++||+..+|
T Consensus 426 ~~~nl~G~PaisvP~g~~~~GlPvGvQlvg~~~~d~~lL~~A~~lE~~~~~ 476 (493)
T 3a2q_A 426 VPFNVSGQPAISLPIGMSSDGMPIGVQIVAAYGREDLLLQVAAQLEGALPW 476 (493)
T ss_dssp THHHHHCCCEEEEEEEECTTSCEEEEEEEESTTCHHHHHHHHHHHHHHSCC
T ss_pred ccccccCCCceeccCCcCCCCCCeEEEEecCCCChHHHHHHHHHHHHhcCc
Confidence 999999999999999998899999999999999999999999999999875
No 12
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=99.74 E-value=1.2e-18 Score=186.01 Aligned_cols=109 Identities=19% Similarity=0.156 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCccccc---cCccccccccccccCCCeEEeccCcCCCCCceeE
Q psy7560 14 SDQWAKEHTEILKTKLTELLGDNGVLVFPAAPESAPYHYATFF---RPYNFTYWALFNILDFPVTNVPVGLDGKGLPLGD 90 (507)
Q Consensus 14 ~~~~a~~~r~~~~~~~~~~f~~~Dvll~Pt~~~~a~~~~~~~~---~~~~~~~t~~~Nl~G~PaisvP~g~~~~GLPvGv 90 (507)
+|.++++.|..++++|.++|+++|+||+||+|.+||+++.... .+....||.+||++|+|++|||+|+ .+||||||
T Consensus 357 ~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~a~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGl 435 (471)
T 3kfu_E 357 YYGRAQAFRRRLKAEAQALFREVDLLLLPTTPHPAFPFGARRDPLAMYREDLYTVGANLTGLPALSFPAGF-EGHLPVGL 435 (471)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTCSEEEEESCSSSCCBTTTTCSHHHHHGGGTTTHHHHHHCCCEEEEEEEE-ETTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCEEEeCCcCCCCCccccccchHHHHHHhhhhhcchhhCCCeEEEeCCC-CCCCCeEE
Confidence 7889999999999999999999999999999999999875321 1122348999999999999999999 89999999
Q ss_pred EEEcCCCCcHHHHHHHHHHHhcc-ccccchhhHh
Q psy7560 91 RVFFSTAGTVTGVRLDSIPEQAR-RFFWSKKCED 123 (507)
Q Consensus 91 Qlvg~~~~D~~lL~~a~~~E~~~-~~~~~~~~~~ 123 (507)
||+|++++|.+||++|++||++. +|..+.+.++
T Consensus 436 Qlvg~~~~D~~LL~~A~~lE~~~g~w~~~~p~~~ 469 (471)
T 3kfu_E 436 QLLAPWGEDERLLRAALAFEEATARAHLKAPLGE 469 (471)
T ss_dssp EEECSTTCHHHHHHHHHHHHHHSSCCCCCTTCCC
T ss_pred EEECCCCCHHHHHHHHHHHHHHhcCcccCCCccc
Confidence 99999999999999999999998 8655444433
No 13
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=99.72 E-value=5.9e-18 Score=179.03 Aligned_cols=110 Identities=20% Similarity=0.193 Sum_probs=96.0
Q ss_pred HHHHHhhccCc-hHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCcccccc--------Ccc-ccccccccccCC
Q psy7560 3 KILCSLCRMVP-SDQWAKEHTEILKTKLTELLGDNGVLVFPAAPESAPYHYATFFR--------PYN-FTYWALFNILDF 72 (507)
Q Consensus 3 ~~~~~~~~~~~-~~~~a~~~r~~~~~~~~~~f~~~Dvll~Pt~~~~a~~~~~~~~~--------~~~-~~~t~~~Nl~G~ 72 (507)
.++..+..++. +|.++++.|..++++|.++|+++|+||+||+|.+||+++..... ... ..||.+||++|+
T Consensus 314 ~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~ 393 (434)
T 2dc0_A 314 EALLAGLALTEKDYRDAVAEREALRLELVKALRGVDALLLPVQPLPAPPLGTEEVELESGRKGHREAFITLTLPFSLLGV 393 (434)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEESCSSSCCBTTCCEEEETTEEEEHHHHHHTTTHHHHHTTC
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEECCCCCCCccCcccccccccchhhhhhhhhhhhhhhhhhCC
Confidence 44566677777 99999999999999999999999999999999999998753210 011 458999999999
Q ss_pred CeEEeccCcCCCCCceeEEEEcCCCCcHHHHHHHHHHHhcc
Q psy7560 73 PVTNVPVGLDGKGLPLGDRVFFSTAGTVTGVRLDSIPEQAR 113 (507)
Q Consensus 73 PaisvP~g~~~~GLPvGvQlvg~~~~D~~lL~~a~~~E~~~ 113 (507)
|++|||+|+ .+|||+||||+|++++|.+||++|++||++.
T Consensus 394 PaisvP~g~-~~GlPvGvqlvg~~~~d~~lL~~A~~lE~~~ 433 (434)
T 2dc0_A 394 PTLALPFAK-VEGMPVGLQVVGAYGEDGKVLALGGWLEARL 433 (434)
T ss_dssp CEEEEEEEE-ETTEEEEEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred CeEEEecCC-CCCCCeEEEEECCCCchHHHHHHHHHHHHhh
Confidence 999999999 8899999999999999999999999999864
No 14
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Probab=99.71 E-value=8.3e-18 Score=176.81 Aligned_cols=108 Identities=24% Similarity=0.266 Sum_probs=95.6
Q ss_pred HHHHHhhccCc-hHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCccccccCccccccccccccCCCeEEeccCc
Q psy7560 3 KILCSLCRMVP-SDQWAKEHTEILKTKLTELLGDNGVLVFPAAPESAPYHYATFFRPYNFTYWALFNILDFPVTNVPVGL 81 (507)
Q Consensus 3 ~~~~~~~~~~~-~~~~a~~~r~~~~~~~~~~f~~~Dvll~Pt~~~~a~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~ 81 (507)
.++..+..++. +|.++++.|..++++|.++|+++|+||+||+|.+||+++... .....||.+||++|+|++|||+|+
T Consensus 302 ~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~--~~~~~~t~~~nl~G~PaisvP~g~ 379 (414)
T 1o9p_A 302 ASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALAS--TGDPRYNRLWTLMGNPCVNVPVLK 379 (414)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTTTCSEEEEESSSSSCCBGGGCC--CCCGGGTHHHHHHCCCEEEEEEEE
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCcccccC--CcccchhhhhHhcCCCeEEeeCCC
Confidence 44556666777 999999999999999999999999999999999999986422 122468999999999999999999
Q ss_pred CCCCCceeEEEEcCCCCcHHHHHHHHHHHhcc
Q psy7560 82 DGKGLPLGDRVFFSTAGTVTGVRLDSIPEQAR 113 (507)
Q Consensus 82 ~~~GLPvGvQlvg~~~~D~~lL~~a~~~E~~~ 113 (507)
+. |||+||||+|++++|.+||++|++||++.
T Consensus 380 ~~-GlPvGvqlvg~~~~d~~lL~~a~~le~~~ 410 (414)
T 1o9p_A 380 VG-GLPIGVQVIARFGNDAHALATAWFLEDAL 410 (414)
T ss_dssp ET-TEEEEEEEEESTTCHHHHHHHHHHHHHHH
T ss_pred CC-CCCeEEEEECCCCChHHHHHHHHHHHHHh
Confidence 77 99999999999999999999999999974
No 15
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Probab=99.71 E-value=8.2e-18 Score=179.90 Aligned_cols=102 Identities=14% Similarity=0.182 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCcccccc----CccccccccccccCCCeEEeccCcCCCCCcee
Q psy7560 14 SDQWAKEHTEILKTKLTELLGDNGVLVFPAAPESAPYHYATFFR----PYNFTYWALFNILDFPVTNVPVGLDGKGLPLG 89 (507)
Q Consensus 14 ~~~~a~~~r~~~~~~~~~~f~~~Dvll~Pt~~~~a~~~~~~~~~----~~~~~~t~~~Nl~G~PaisvP~g~~~~GLPvG 89 (507)
+|.++++.|..++++|.++|+++|+||+||+|.+||+++..... .....||.+||++|+|++|||+|+ .+|||||
T Consensus 367 ~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPvG 445 (478)
T 3h0l_A 367 YYLKAQKVRRLITNDFLKAFEEVDVIASPTTPTLPFKFGERLENPIEMYLSDILTVPANLAGLPAISIPIAW-KDGLPVG 445 (478)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTCSEEEEESCSSSCCBTTTTSSSHHHHHGGGTTTHHHHHHTCCEEEEEEEE-ETTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCEEEcCCCCCCCCCcccccCChHhhhhhhhhhhhhHhhCCCeEEEeCCC-CCCCCeE
Confidence 47789999999999999999999999999999999998753211 112348999999999999999999 7899999
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhccccc
Q psy7560 90 DRVFFSTAGTVTGVRLDSIPEQARRFF 116 (507)
Q Consensus 90 vQlvg~~~~D~~lL~~a~~~E~~~~~~ 116 (507)
|||+|++++|.+||++|++||++.+|.
T Consensus 446 lQlvg~~~~D~~LL~~A~~lE~~~~~~ 472 (478)
T 3h0l_A 446 GQLIGKHWDETTLLQISYLWEQKFKHY 472 (478)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHSCGG
T ss_pred EEEECCCCCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999999998853
No 16
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Probab=99.71 E-value=9.4e-18 Score=179.92 Aligned_cols=102 Identities=19% Similarity=0.166 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCcccccc----CccccccccccccCCCeEEeccCcCCCCCcee
Q psy7560 14 SDQWAKEHTEILKTKLTELLGDNGVLVFPAAPESAPYHYATFFR----PYNFTYWALFNILDFPVTNVPVGLDGKGLPLG 89 (507)
Q Consensus 14 ~~~~a~~~r~~~~~~~~~~f~~~Dvll~Pt~~~~a~~~~~~~~~----~~~~~~t~~~Nl~G~PaisvP~g~~~~GLPvG 89 (507)
.|.++++.|..+++++.++|+++|+||+||+|.+||+++..... +....||.+||++|+|++|||+|++ +|||||
T Consensus 374 ~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvG 452 (485)
T 3ip4_A 374 YYKKSQKVRTLIKNDFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQS-NGRPIG 452 (485)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCSEEEEESSSSSCCBTTTSTTCHHHHHGGGTTTHHHHHHTCCEEEEEEEEE-TTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCCcccccCChHHHhhhhhhhhhhHhhCCCeEEEeCCcC-CCCCEe
Confidence 47889999999999999999999999999999999998753211 1123489999999999999999997 899999
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhccccc
Q psy7560 90 DRVFFSTAGTVTGVRLDSIPEQARRFF 116 (507)
Q Consensus 90 vQlvg~~~~D~~lL~~a~~~E~~~~~~ 116 (507)
|||+|++++|.+||++|++||+..+|.
T Consensus 453 lqlvg~~~~d~~lL~~A~~lE~~~~~~ 479 (485)
T 3ip4_A 453 LQFIGKPFDEKTLYRVAYQYETQYNLH 479 (485)
T ss_dssp EEEECSTTCHHHHHHHHHHHHHHSCCT
T ss_pred EEEEcCCCCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999999998853
No 17
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*
Probab=99.69 E-value=1.2e-17 Score=178.81 Aligned_cols=101 Identities=18% Similarity=0.176 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCcccc---ccCccccccccccccCCCeEEeccCcCCCCCceeE
Q psy7560 14 SDQWAKEHTEILKTKLTELLGDNGVLVFPAAPESAPYHYATF---FRPYNFTYWALFNILDFPVTNVPVGLDGKGLPLGD 90 (507)
Q Consensus 14 ~~~~a~~~r~~~~~~~~~~f~~~Dvll~Pt~~~~a~~~~~~~---~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GLPvGv 90 (507)
+|.++++.|..+++++.++|+++|+||+||+|.+||+++... .......||.+||++|+|++|||+|++ +||||||
T Consensus 360 ~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvGv 438 (476)
T 2gi3_A 360 YFNKAMKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEIKDPLTYYLMDIFTIPANLAGLPAISVPFGFS-NNLPVGV 438 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSEEEEESCSSCCCBTTTCCCHHHHHTTTTTTHHHHHHTCCEEEEEEEEE-TTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCcccccccchhhhhccceeccccccCCceEEEecccC-CCCCeEE
Confidence 467788889999999999999999999999999999987511 011224689999999999999999986 8999999
Q ss_pred EEEcCCCCcHHHHHHHHHHHhcccc
Q psy7560 91 RVFFSTAGTVTGVRLDSIPEQARRF 115 (507)
Q Consensus 91 Qlvg~~~~D~~lL~~a~~~E~~~~~ 115 (507)
||+|++++|.+||++|++||++.+|
T Consensus 439 qlvg~~~~d~~lL~~A~~lE~~~~~ 463 (476)
T 2gi3_A 439 QVIGRRFADGKVFRIARAIEKNSPY 463 (476)
T ss_dssp EEECCTTCHHHHHHHHHHHHHHCTT
T ss_pred EEEcCCCCHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999999875
No 18
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A
Probab=99.67 E-value=4.1e-17 Score=176.13 Aligned_cols=104 Identities=24% Similarity=0.223 Sum_probs=90.9
Q ss_pred cCc-hHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCCcccccc--------CccccccccccccCCCeEEeccCc
Q psy7560 11 MVP-SDQWAKEHTEILKTKLTELLGDNGVLVFPAAPESAPYHYATFFR--------PYNFTYWALFNILDFPVTNVPVGL 81 (507)
Q Consensus 11 ~~~-~~~~a~~~r~~~~~~~~~~f~~~Dvll~Pt~~~~a~~~~~~~~~--------~~~~~~t~~~Nl~G~PaisvP~g~ 81 (507)
... +|.++++.|.+++++|.++|+++|+||+||+|.+||+++..... .....||.+||++|+|++|||+|+
T Consensus 391 ~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~ 470 (521)
T 3a1k_A 391 LGGASYGKARNLVPLARAAYDTALRQFDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAGL 470 (521)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHCSEEEEESCSSCCCBCCCTTCCHHHHHHHHHTTCTTTHHHHHHCCCEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCCcccccccCchhhHHHHHHhhhcccccchhcCCCcEEeeccc
Confidence 344 78899999999999999999999999999999999998752110 112457999999999999999999
Q ss_pred CCCCCceeEEEEcCCCCcHHHHHHHHHHHh-cccc
Q psy7560 82 DGKGLPLGDRVFFSTAGTVTGVRLDSIPEQ-ARRF 115 (507)
Q Consensus 82 ~~~GLPvGvQlvg~~~~D~~lL~~a~~~E~-~~~~ 115 (507)
.+||||||||+|++++|.+||++|++||+ ..+|
T Consensus 471 -~~GlPvGlQlvg~~~~d~~LL~~A~~~E~~~~~~ 504 (521)
T 3a1k_A 471 -VNGLPVGMMITGRHFDDATVLRVGRAFEKLRGAF 504 (521)
T ss_dssp -ETTEEEEEEEECSTTCHHHHHHHHHHHHHHHCCC
T ss_pred -CCCCCeeEEEEcCCCCHHHHHHHHHHHHHhhccc
Confidence 78999999999999999999999999999 6664
No 19
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*
Probab=99.62 E-value=2.7e-16 Score=169.31 Aligned_cols=102 Identities=18% Similarity=0.141 Sum_probs=85.6
Q ss_pred cCc-hHHHHHHHHHHHHHH--HHHHhcC--CCEEEeCCCCCCCCCCccccccCccccccccccccCCCeEEeccCcCCCC
Q psy7560 11 MVP-SDQWAKEHTEILKTK--LTELLGD--NGVLVFPAAPESAPYHYATFFRPYNFTYWALFNILDFPVTNVPVGLDGKG 85 (507)
Q Consensus 11 ~~~-~~~~a~~~r~~~~~~--~~~~f~~--~Dvll~Pt~~~~a~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~G 85 (507)
++. +|.++++.|..++++ +.++|++ +|+||+||+ .++++++.... .....||.+||++|+|++|||+|++ +|
T Consensus 380 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~-~~a~~~~~~~~-~~~~~~t~~~nl~G~PaisvP~g~~-~G 456 (503)
T 1m22_A 380 LADPAYIRARSDARRLAGPEGIDAALAAHQLDALVAPTT-GVAWPIRSEGD-DFPGESYSAAAVAGYPSLTVPMGQI-DG 456 (503)
T ss_dssp TTCHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEEEEECC-CCCCBTTC----CCTTCCHHHHHHHTCCEEEEEEEEE-TT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEeCCC-ccCcccccccC-cccccccccchhhCCCeEEeccccC-CC
Confidence 455 888888888888776 9999985 999999999 56777652211 1125689999999999999999986 89
Q ss_pred CceeEEEEcCCCCcHHHHHHHHHHHhcccc
Q psy7560 86 LPLGDRVFFSTAGTVTGVRLDSIPEQARRF 115 (507)
Q Consensus 86 LPvGvQlvg~~~~D~~lL~~a~~~E~~~~~ 115 (507)
|||||||+|++++|.+||++|++||++.+|
T Consensus 457 lPvGvqlvg~~~~d~~lL~~A~~~E~~~~~ 486 (503)
T 1m22_A 457 LPVGLLFMGTAWSEPKLIEMAYAYEQRTRA 486 (503)
T ss_dssp EEEEEEEECSTTCHHHHHHHHHHHHHHHCC
T ss_pred CCeEEEEECCCCChHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999875
No 20
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*
Probab=99.61 E-value=8e-16 Score=167.26 Aligned_cols=105 Identities=20% Similarity=0.121 Sum_probs=89.3
Q ss_pred hccCc-hHHHHHHHHHHHHHHHHHHhc--CCCEEEeCCCCCCCCCCccccccCccccccccccccCCCeEEeccCcC---
Q psy7560 9 CRMVP-SDQWAKEHTEILKTKLTELLG--DNGVLVFPAAPESAPYHYATFFRPYNFTYWALFNILDFPVTNVPVGLD--- 82 (507)
Q Consensus 9 ~~~~~-~~~~a~~~r~~~~~~~~~~f~--~~Dvll~Pt~~~~a~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~--- 82 (507)
...+. ++.+++..|..++++|.+.|+ ++|+||||+ +.+|++|+..........||.+||++|+|+++||+|+.
T Consensus 431 ~~~s~~e~~~~~~~r~~~r~~~~~~w~~~~lDaLL~Pt-~~pA~~h~~~~~~~~~~~YT~l~NLLDyPA~vVPvg~v~~~ 509 (573)
T 3ppm_A 431 RPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVLLTPM-LGPALDLNTPGRATGAVSYTMLYNCLDFPAGVVPVTTVTAE 509 (573)
T ss_dssp SBCBHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEC-CCSCCBTTCGGGCGGGGHHHHHHHHTTCCEEEEEEEECCHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhhcCCCEeeCCC-CCCCcCCccccccccccchhhhhHhhCCCeEEEeccccccc
Confidence 44445 888899999999999999996 599999999 45888887533223346799999999999999999964
Q ss_pred --------------------------CCCCceeEEEEcCCCCcHHHHHHHHHHHhccc
Q psy7560 83 --------------------------GKGLPLGDRVFFSTAGTVTGVRLDSIPEQARR 114 (507)
Q Consensus 83 --------------------------~~GLPvGvQlvg~~~~D~~lL~~a~~~E~~~~ 114 (507)
.+||||||||||++++|+++|++|+.+|++..
T Consensus 510 ~d~~~~~~~~~~~~~~d~~~~~~~~~~~GlPVgVQiVGrr~~EEklL~~a~~IE~~l~ 567 (573)
T 3ppm_A 510 DDAQMELYKGYFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLMT 567 (573)
T ss_dssp HHHHHTTCCCSSCSHHHHHHHHHTCSCTTCEEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred ccccccccccccchhhhhhhhhhhhccCCCceEEEEeCCCCcHHHHHHHHHHHHHHHh
Confidence 26999999999999999999999999999865
No 21
>3shg_B VBHA; ampylation, adenylylation, toxin-antitoxin complex, FIC fold transfer, transferase-protein binding complex; HET: TLA; 1.50A {Bartonella schoenbuchensis R1}
Probab=37.22 E-value=41 Score=24.78 Aligned_cols=28 Identities=14% Similarity=0.394 Sum_probs=24.8
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy7560 189 ATQIAKKIRNKNITSVEVVQAFIERIEQ 216 (507)
Q Consensus 189 ~~~l~~~l~~g~~t~~ev~~~~l~ri~~ 216 (507)
+.++.+.+-.|++|..++++.+.+||.+
T Consensus 32 ~l~~~erwv~GEis~~e~i~~~~~r~~~ 59 (61)
T 3shg_B 32 VVAQMERVVVGELETSDVIKDLMERIKR 59 (61)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHc
Confidence 4567788999999999999999999975
Done!