RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7560
(507 letters)
>gnl|CDD|216494 pfam01425, Amidase, Amidase.
Length = 431
Score = 207 bits (530), Expect = 1e-61
Identities = 100/291 (34%), Positives = 146/291 (50%), Gaps = 24/291 (8%)
Query: 205 EVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSKES 264
E+V+A+++R E NP LNA V + EAL +AKAAD++ A +E P GVP + K++
Sbjct: 1 ELVEAYLDRAEAANPKLNAFVTVFFEEALAQAKAADKRRARKEKG---PLHGVPISLKDN 57
Query: 265 TACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPEL-LWSESRNMVYGQS 323
KG+ T G A +G DA +VER++ AG ++LG TN+ E + S + N +G +
Sbjct: 58 IDVKGVPTTAGSKALEGYPPPYDATVVERLRAAGAVILGKTNMDEFAMGSTTENSAFGPT 117
Query: 324 NNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSR 383
NP++L RT G SSGG A V+A L +GTD GGS RIPA +CG+ G K T G V+
Sbjct: 118 RNPWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIPAAFCGLVGLKPTYGRVSRY 177
Query: 384 GIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKL---------PAYNFDKSVDLA 434
G+ S+ GP+ + ED + D P + L
Sbjct: 178 GVVPY----SSSLDHVGPLARTVEDAALLLDVIAGYDPADPTSAPSPVPDFAEPLKKSLK 233
Query: 435 KLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALK----VVSHSEPEDLSHI 481
L++ E + P ++ +A+RK AL+ V EP L H
Sbjct: 234 GLRIGVPREDFYFSLDP---EVQRAVRKAAAALEALGHEVVEVEPPSLKHA 281
Score = 36.9 bits (86), Expect = 0.025
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 7/59 (11%)
Query: 38 VLVFPAAPESAP------YHYATFFRPYNFTYW-ALFNILDFPVTNVPVGLDGKGLPLG 89
VL+ P P AP + +FT N+ P ++P G GLP+G
Sbjct: 359 VLLSPTTPTPAPRLGEAADSPTVLYNLLDFTANTVPANLAGLPAISLPAGFSEDGLPVG 417
>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
and related amidases [Translation, ribosomal structure
and biogenesis].
Length = 475
Score = 201 bits (513), Expect = 9e-59
Identities = 106/307 (34%), Positives = 151/307 (49%), Gaps = 24/307 (7%)
Query: 188 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEAL--EEAKAADQKIAL 245
+A ++A +R K +++VE+V+A++ RIE +NP LNA V AL EA AAD ++A
Sbjct: 8 TAAELAALLRAKELSAVELVEAYLARIEALNPDLNAFVAVDPEAALALAEAAAADARLAA 67
Query: 246 EEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNT 305
E + P GVP K++ GL T G A + DA +VER++ AG ++LG T
Sbjct: 68 GEPLG--PLAGVPIAVKDNIDTAGLPTTAGSKALEDYVPPYDATVVERLRAAGAVILGKT 125
Query: 306 NIPEL-LWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIP 364
N+ E + S + N +G + NP+NL R G SSGG A V+A L LG+D GGS RIP
Sbjct: 126 NMDEFAMGSSTENSAFGPTRNPWNLERVPGGSSGGSAAAVAAGLVPLALGSDTGGSIRIP 185
Query: 365 ALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLL--------PYSKCL 416
A +CG+ G K T G V+ G+ S+ GP+ + D P +
Sbjct: 186 AAFCGLVGLKPTYGRVSRYGVVPL----ASSLDQIGPLARTVRDAALLLDVIAGPDPRDS 241
Query: 417 ILPDKLPAYNFDKSVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALK-----VVS 471
LP P DL L++ +E G P+ D+ A V AL+ VV
Sbjct: 242 PLPPPPPVPPALAGKDLKGLRIGVPKELGG--GGPLDPDVRAAFEAAVKALEAAGAEVVE 299
Query: 472 HSEPEDL 478
S P
Sbjct: 300 VSLPLLS 306
Score = 42.3 bits (100), Expect = 5e-04
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 24 ILKTKLTELLGDNGVLVFPAAPESAP---YHYATFFRPYNFTYW----ALFNILDFPVTN 76
+++ +L + VL+ P P AP + P N+ P +
Sbjct: 371 LIRRAFDKLFEEVDVLLTPTTPTPAPKIGESESDGDDPLEMYLLDVFTVPANLAGLPAIS 430
Query: 77 VPVGLDGKGLPLG 89
VP G GLP+G
Sbjct: 431 VPAGFTADGLPVG 443
>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional.
Length = 490
Score = 195 bits (498), Expect = 2e-56
Identities = 96/249 (38%), Positives = 132/249 (53%), Gaps = 9/249 (3%)
Query: 179 PVKNKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKA 238
++ AT++A + ++SVE+ I RIE+ + +NA+V + A A+A
Sbjct: 4 KAADEWSFLPATELAAALAAGEVSSVELTDLAIARIERHDGKINAIVVRDFDRARAAARA 63
Query: 239 ADQKIALEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAG 298
AD A E P LG+P T KES GL T G + DA V R+K AG
Sbjct: 64 ADAARARGER---GPLLGIPVTVKESFNVAGLPTTWGFPDLRDYVPAEDAVAVARLKAAG 120
Query: 299 GILLGNTNIPELL--WSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTD 356
++LG TN+P L W +S N +YG +NNP++L RT G SSGG A ++A L +G+D
Sbjct: 121 AVILGKTNVPLGLQDW-QSYNEIYGTTNNPWDLARTPGGSSGGSAAALAAGFGALSIGSD 179
Query: 357 LGGSNRIPALYCGVYGHKLTTGSVNSRG--IYGRDGKEGKSMLA-AGPIVKHAEDLLPYS 413
+GGS R+PA YCGVY HK T G V RG G++ LA AGP+ + A DL
Sbjct: 180 IGGSLRVPAHYCGVYAHKPTLGLVPLRGHIPPPAPALPGQADLAVAGPMARSARDLALLL 239
Query: 414 KCLILPDKL 422
+ PD L
Sbjct: 240 DVMAGPDPL 248
>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional.
Length = 469
Score = 158 bits (401), Expect = 8e-43
Identities = 95/317 (29%), Positives = 154/317 (48%), Gaps = 24/317 (7%)
Query: 188 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEE 247
SA ++A +R++++++ E +A + R++ VNP +NA+VD R EAL +A A D A +
Sbjct: 9 SAAELAAAVRSRDVSAREAAEAALARLDAVNPAINAVVDHRPEEALAQADAVDAARARGD 68
Query: 248 DISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNI 307
D P GVP T K + G + T G+ +K A AD+ +V+ ++ AG +++G TN
Sbjct: 69 DPG--PLAGVPVTVKVNVDQAGFATTNGVRLQKDLIAPADSPVVDNLRKAGAVIIGRTNT 126
Query: 308 PE--LLWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPA 365
P W N ++G++ NP++ T G SSGG A V+A + GTD+GGS R PA
Sbjct: 127 PAFSYRWFTD-NPLHGRTLNPWDPSLTPGGSSGGAAAAVAAGIGAIAHGTDIGGSIRYPA 185
Query: 366 LYCGVYGHKLTTGSV---NS----RGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLIL 418
CGV+G + T G V N+ R I + M GP+ + DL +
Sbjct: 186 YACGVHGLRPTLGRVPAYNASSPERPI------GAQLMSVQGPLARTVADLRLALAAMAA 239
Query: 419 PDKLPAYNFDKSVDLAKL--KVFYVEEPGDMKVSPMSKD-MIQAIRKCVNALKVVSHSEP 475
PD + ++ +V P + V P + + A R+ +A V E
Sbjct: 240 PDPRDPWWVPAPLEGPPRPKRVALCVRPDGLDVDPEVEAALRDAARRLEDAGWTV--EEV 297
Query: 476 EDLSHIKQ-FRLGYDVW 491
+D +++ L +W
Sbjct: 298 DDTPPLREAAELQERLW 314
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional.
Length = 484
Score = 153 bits (388), Expect = 5e-41
Identities = 77/207 (37%), Positives = 113/207 (54%), Gaps = 4/207 (1%)
Query: 176 PLPPVKNKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEAL-E 234
P P + IV SA +++ IR + ++ VEV++A++ IE+VNP +NA+V R +AL
Sbjct: 1 PASPPPDPIVRLSAHALSRAIRRRQVSCVEVMRAYLAHIERVNPAVNAIVALRDRDALLA 60
Query: 235 EAKAADQKIALEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERV 294
EA D +A E G+P K+ KG+ TLG + DA +VER+
Sbjct: 61 EAAEKDAALARGE--YRGWLHGMPQAPKDLAPTKGIRTTLGSPIFADQVPQEDAIVVERM 118
Query: 295 KTAGGILLGNTNIPEL-LWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGL 353
+ AG I +G TN PE L S + N VYG + NPY+ R+ G SSGG A ++ +
Sbjct: 119 RAAGAIFIGKTNTPEFGLGSHTYNPVYGATRNPYDPSRSAGGSSGGAAAALALRMLPVAD 178
Query: 354 GTDLGGSNRIPALYCGVYGHKLTTGSV 380
G+D+ GS R PA + VYG + + G V
Sbjct: 179 GSDMMGSLRNPAAFNNVYGFRPSQGRV 205
Score = 28.8 bits (65), Expect = 8.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 73 PVTNVPVGLDGKGLPLG 89
P +VPVG + GLP+G
Sbjct: 431 PAISVPVGFNAAGLPMG 447
>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated.
Length = 472
Score = 147 bits (374), Expect = 5e-39
Identities = 77/228 (33%), Positives = 106/228 (46%), Gaps = 17/228 (7%)
Query: 188 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEE 247
S T+ A +R+ ++ +E+V+A + R LNA AL A+ D + A
Sbjct: 12 SLTEAAAALRSGRLSCLELVEALLARAAA-LAPLNAFTTVDAEGALAAARRIDAQRAAGA 70
Query: 248 DISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNI 307
GVP K++ G+ T G A G DA +V+R+ AG + LG N+
Sbjct: 71 A---LLLAGVPIVIKDNINTAGMPTTAGTPALLGFVPATDAPVVQRLLDAGAVPLGKANM 127
Query: 308 PELLWS-ESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPAL 366
EL + S N +G NPY+ R G SSGG A V+A + GLGTD GGS RIPA
Sbjct: 128 HELAFGITSNNGAFGAVRNPYDPARIAGGSSGGTAAAVAARLAPAGLGTDTGGSVRIPAA 187
Query: 367 YCGVYGHKLTTGSVNSRGI----YGRDGKEGKSMLAAGPIVKHAEDLL 410
CGV G + T G + G+ + RD GPI + DL
Sbjct: 188 LCGVVGLRPTVGRYSGDGVVPISHTRD--------TVGPIARSVADLA 227
>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A;
Reviewed.
Length = 459
Score = 143 bits (363), Expect = 2e-37
Identities = 96/307 (31%), Positives = 143/307 (46%), Gaps = 68/307 (22%)
Query: 196 IRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYL 255
++NK I++VE+ QA+++RIE+V+P LNA + EAL +AKAAD K+A E P
Sbjct: 1 LKNKEISAVELTQAYLDRIEEVDPKLNAFITVTEEEALAQAKAADAKLAAGEA---GPLA 57
Query: 256 GVPFTSK--------ESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNI 307
G+P K +T S L + DA +VE++K AG ++LG TN+
Sbjct: 58 GIPIAIKDNICTKGIRTTCA---SKIL-----ENYVPPYDATVVEKLKAAGAVILGKTNM 109
Query: 308 PEL-LWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPAL 366
E + S + N +G + NP++L R G SSGG A V+A + LG+D GGS R PA
Sbjct: 110 DEFAMGSSTENSAFGPTKNPWDLERVPGGSSGGSAAAVAAGLAPAALGSDTGGSIRQPAA 169
Query: 367 YCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLA-------AGPIVKHAEDLLPYSKCLIL- 418
+CGV G K T G V SR YG ++A GP + ED +L
Sbjct: 170 FCGVVGLKPTYGRV-SR--YG--------LIAFASSLDQIGPFARTVED------AALLL 212
Query: 419 --------------PDKLPAYNFDKSVDLAKLKVFYVEE---PGDMKVSPMSKDMIQAIR 461
+P Y D+ LK+ +E G + ++ +A+
Sbjct: 213 NAIAGHDPKDSTSADVPVPDYTAALGKDIKGLKIGVPKEYFGEG------LDPEVKEAVE 266
Query: 462 KCVNALK 468
+ L+
Sbjct: 267 AAIKKLE 273
>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase,
A subunit. In many species, Gln--tRNA ligase is
missing. tRNA(Gln) is misacylated with Glu after which a
heterotrimeric amidotransferase converts Glu to Gln.
This model represents the amidase chain of that
heterotrimer, encoded by the gatA gene. In the Archaea,
Asn--tRNA ligase is also missing. This amidase subunit
may also function in the conversion of Asp-tRNA(Asn) to
Asn-tRNA(Asn), presumably with a different recognition
unit to replace gatB. Both Methanococcus jannaschii and
Methanobacterium thermoautotrophicum have both authentic
gatB and a gatB-related gene, but only one gene like
gatA. It has been shown that gatA can be expressed only
when gatC is also expressed. In most species expressing
the amidotransferase, the gatC ortholog is about 90
residues in length, but in Mycoplasma genitalium and
Mycoplasma pneumoniae the gatC equivalent is as the
C-terminal domain of a much longer protein. Not
surprisingly, the Mycoplasmas also represent the most
atypical lineage of gatA orthology. This orthology group
is more narrowly defined here than in Proc Natl Acad Aci
USA 94, 11819-11826 (1997). In particular, a Rhodococcus
homolog found in association with nitrile hydratase
genes and described as an enantiomer-selective amidase
active on several 2-aryl propionamides, is excluded
here. It is likely, however, that the amidase subunit
GatA is not exclusively a part of the Glu-tRNA(Gln)
amidotransferase heterotrimer and restricted to that
function in all species [Protein synthesis, tRNA
aminoacylation].
Length = 460
Score = 137 bits (346), Expect = 2e-35
Identities = 84/287 (29%), Positives = 137/287 (47%), Gaps = 29/287 (10%)
Query: 192 IAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISD 251
+ + ++ K I+ EV++A ++RIE +NA ++ +AL++AK D+ I
Sbjct: 1 LRQLLKKKEISIKEVLEASLDRIEANKDKINAFLEVTVEKALKQAKKLDKAILT------ 54
Query: 252 KPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPEL- 310
P G+P K++ + KG+ T + DA ++ER+K AG +++G TN+ E
Sbjct: 55 -PLAGIPIAVKDNISTKGIVTTCASKILENYIPPYDATVIERLKQAGALIIGKTNMDEFA 113
Query: 311 LWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGV 370
+ S + +G + NP+NL R G SSGG A V+A + LG+D GGS R PA +CGV
Sbjct: 114 MGSSTETSAFGPTKNPWNLDRVPGGSSGGSAAAVAADLAPFSLGSDTGGSIRQPASFCGV 173
Query: 371 YGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDK--------- 421
G K T G V+ G+ S+ GP + ED+ + DK
Sbjct: 174 VGFKPTYGRVSRYGLVAY----ASSLDQIGPFARTVEDIALLLDVISGHDKRDSTSAKVP 229
Query: 422 LPAYNFDKSVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALK 468
P + + DL LKV V+E S++M + +++
Sbjct: 230 DPEFFEELKKDLKGLKVGVVKE--------FSEEMDKEVQEKFENAL 268
>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional.
Length = 462
Score = 136 bits (343), Expect = 5e-35
Identities = 64/189 (33%), Positives = 110/189 (58%), Gaps = 5/189 (2%)
Query: 193 AKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDK 252
A+ + + +T+ +++ +++RIE+++ +L A + A EA+AA Q++ E +
Sbjct: 15 ARMLADGELTAPMLLEVYLQRIERLDSHLRAYRVVLFDRARAEAEAAQQRLDAGERL--- 71
Query: 253 PYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPEL-L 311
P LGVP K+ G T G A G A +DA +V R++ AG +++G TN+PEL +
Sbjct: 72 PLLGVPIAIKDDVDVAGEVTTYGS-AGHGPAATSDAEVVRRLRAAGAVIIGKTNVPELMI 130
Query: 312 WSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGVY 371
+ ++ +G + NP++ RT G SSGG A V+A + + LG+D GGS RIP+ +CG++
Sbjct: 131 MPFTESLAFGATRNPWDPNRTPGGSSGGSAAAVAAGLAPVALGSDGGGSIRIPSTWCGLF 190
Query: 372 GHKLTTGSV 380
G K +
Sbjct: 191 GLKPQRDRI 199
Score = 29.9 bits (67), Expect = 3.5
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 63 YWALFNILDFPVTNVPVGLDGKGLPLGDRVFFSTAGTVTGVRLDSIPEQARRF 115
Y+ ++N+ P VP DG GLP+ ++ T + L + E AR +
Sbjct: 402 YFQVWNLTGQPAAVVPWDFDGDGLPMSVQLVGRPYDEATLLALAAQIESARPW 454
>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional.
Length = 482
Score = 131 bits (332), Expect = 2e-33
Identities = 94/303 (31%), Positives = 143/303 (47%), Gaps = 32/303 (10%)
Query: 184 IVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKI 243
+ + AT +A+ ++ +T +E+V I + +++NP LNA+V RY EALEEAK
Sbjct: 1 MTYKDATAMAQAVQQGQVTPLELVTQAIYKAKKLNPTLNAIVSERYEEALEEAK------ 54
Query: 244 ALEEDISDKPYLGVPFTSKE-STACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILL 302
+ D S KP+ GVP K+ KG +T G K +A V+R++ G I+L
Sbjct: 55 --QRDFSGKPFAGVPIFLKDLGQELKGQLSTSGSRLFKNYQATKTDLYVKRLEDLGFIIL 112
Query: 303 GNTNIPELLWSE-SRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSN 361
G +N PE + S + ++G N P++ R G SSGG A LVS+ L +D GGS
Sbjct: 113 GRSNTPEFGFKNISDSSLHGPVNLPFDNSRNAGGSSGGAAALVSSGIVALAAASDGGGSI 172
Query: 362 RIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSM-LAAGPIVKHAEDLLPYSKCLILPD 420
RIPA + G+ G K + G + G G +G S+ A V+ LL Y
Sbjct: 173 RIPASFNGLIGLKPSRGRIPV-GPGSYRGWQGASVHFALTKSVRDTRRLLYY-------- 223
Query: 421 KLPAYNFDKSVDLAKLKVFYVEEPGDMKV-----------SPMSKDMIQAIRKCVNALKV 469
L Y + LA L + + + SP+S D +A+++ V L+
Sbjct: 224 -LQMYQMESPFPLATLSKESLFQSLQRPLKIAFYQRSPDGSPVSLDAAKALKQAVTFLRE 282
Query: 470 VSH 472
H
Sbjct: 283 QGH 285
>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional.
Length = 465
Score = 129 bits (326), Expect = 1e-32
Identities = 77/208 (37%), Positives = 104/208 (50%), Gaps = 18/208 (8%)
Query: 188 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEE 247
SA +IA +R +++ V QA + RI + NP LNA AL EA D A E
Sbjct: 8 SAAEIAAAVRAGELSARAVAQATLARIARANPQLNAFTAVTAERALAEAARIDAARAAGE 67
Query: 248 DISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKK-------ADADAYIVERVKTAGGI 300
+ P GVPF A K L + GL G K A DA V R++ AG +
Sbjct: 68 PLG--PLAGVPF------AVKNLFDVAGLTTLAGSKINRDRPPATRDATAVRRLEAAGAV 119
Query: 301 LLGNTNIPELLWS-ESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSV-LGLGTDLG 358
L+G N+ E + + N YG + NP++L R G SSGG A V+A G V LG+D
Sbjct: 120 LVGALNMDEYAYGFTTENSHYGATRNPHDLTRIAGGSSGGSAAAVAA-GLVPFTLGSDTN 178
Query: 359 GSNRIPALYCGVYGHKLTTGSVNSRGIY 386
GS R+PA CG++G K T G ++ G +
Sbjct: 179 GSIRVPASLCGIFGLKPTYGRLSRAGSF 206
>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional.
Length = 466
Score = 128 bits (324), Expect = 2e-32
Identities = 68/201 (33%), Positives = 102/201 (50%), Gaps = 16/201 (7%)
Query: 188 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEE 247
+A ++ R ++ VE QA ++RI++ +P +NA AL A+A++++ E
Sbjct: 8 TAVELLAAYRRGELSPVEATQAVLDRIDRRDPAVNAFCLVDAEGALAAARASEERWRRGE 67
Query: 248 DISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKA-------DADAYIVERVKTAGGI 300
GVP + K+ + T G +G +A D DA V R++ AG +
Sbjct: 68 PCG--LLDGVPVSIKD------IFLTRGWPTLRGSRAIDADGPWDVDAPAVARLREAGAV 119
Query: 301 LLGNTNIPELLWSE-SRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGG 359
LLG T PE W + + +YG + NP++ T G SSGG A V+ L +GTD GG
Sbjct: 120 LLGKTTTPEFGWKGVTDSPLYGITRNPWDTRLTAGGSSGGAAAAVALGMGPLSVGTDGGG 179
Query: 360 SNRIPALYCGVYGHKLTTGSV 380
S RIPA +CG +G K T G V
Sbjct: 180 SVRIPASFCGTFGFKPTFGRV 200
Score = 30.4 bits (69), Expect = 2.5
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 61 FTYWALFNILDFPVTNVPVGLDGKGLPLG 89
FTY FN+ P +VP G GLP+G
Sbjct: 406 FTY--PFNLTQQPAASVPCGFTAAGLPVG 432
>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional.
Length = 464
Score = 125 bits (315), Expect = 4e-31
Identities = 85/283 (30%), Positives = 137/283 (48%), Gaps = 22/283 (7%)
Query: 188 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEE 247
SA ++ R ++++ VEV +A + I + P+LNA+ A A+A+ + A E
Sbjct: 8 SAVELLAGYRARSLSPVEVTEAVLAHIARWEPHLNALYAFDPEAARAAARASTARWAKGE 67
Query: 248 DISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNI 307
+ P GVP T KE+ A +G+ LG A A ADA R++ AG ++L T +
Sbjct: 68 PLG--PLDGVPVTIKENIATRGVPVPLGTAATDLPPAAADAPPAARLREAGAVILAKTTM 125
Query: 308 PEL-LWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPAL 366
P+ + S + +G + NP++L + G SS G +A L LGTD+GGS R+PA
Sbjct: 126 PDYGMLSSGLSSFHGLTRNPWDLDQNPGGSSAGAGAAAAAGYGPLHLGTDIGGSVRLPAG 185
Query: 367 YCGVYGHKLTTGSVNSRGIY-GRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDK---- 421
+CG+ G K + G + Y GR AGP+ + +D L PD
Sbjct: 186 WCGIVGLKPSLGRIPIDPPYTGR---------CAGPMTRTVDDAALLMSVLSRPDARDGT 236
Query: 422 -LPAYNFDKS---VDLAKLKVFYVEEPG-DMKVSPMSKDMIQA 459
LP + D S +D+ L++ + + G + V P + ++A
Sbjct: 237 SLPPQDIDWSDLDIDVRGLRIGLMLDAGCGLAVDPEVRAAVEA 279
>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family. Members of
this protein family are aminohydrolases related to, but
distinct from, glutamyl-tRNA(Gln) amidotransferase
subunit A. The best characterized member is the biuret
hydrolase of Pseudomonas sp. ADP, which hydrolyzes
ammonia from the three-nitrogen compound biuret to yield
allophanate. Allophanate is also an intermediate in urea
degradation by the urea carboxylase/allophanate
hydrolase pathway, an alternative to urease [Unknown
function, Enzymes of unknown specificity].
Length = 452
Score = 122 bits (309), Expect = 2e-30
Identities = 72/207 (34%), Positives = 104/207 (50%), Gaps = 16/207 (7%)
Query: 188 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEE 247
S +IA IR+ +++ V +A + RI Q + LNA AL +A D +A
Sbjct: 1 SIVEIAGAIRSGRVSARAVAEATLARINQADGGLNAFTAVTAERALADAARIDADLAAGS 60
Query: 248 DISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKK-------ADADAYIVERVKTAGGI 300
+ P GVPF A K L + GL G K A DA +V+R+ AG +
Sbjct: 61 PLG--PLAGVPF------AVKNLFDVAGLTTLAGAKINRDLAPAKRDATLVQRLSAAGAV 112
Query: 301 LLGNTNIPELLWS-ESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGG 359
L+G N+ E + + N YG + NP++L R G SSGG A V+A LG+D G
Sbjct: 113 LVGALNMDEFAYGFTTENAHYGPTRNPHDLTRIAGGSSGGSAAAVAAGLVPFSLGSDTNG 172
Query: 360 SNRIPALYCGVYGHKLTTGSVNSRGIY 386
S R+PA CGV+G K T G ++ +G++
Sbjct: 173 SIRVPASLCGVFGLKPTYGRLSRQGVF 199
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional.
Length = 483
Score = 111 bits (280), Expect = 2e-26
Identities = 67/184 (36%), Positives = 98/184 (53%), Gaps = 7/184 (3%)
Query: 201 ITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFT 260
+TSVE+V+ + RIE P LNA R AL EA AD++ A + + P LGVP
Sbjct: 32 VTSVELVRRSLRRIEASQPTLNAFRVVRAEAALAEAAEADRRRAAGDRL---PLLGVPIA 88
Query: 261 SKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPEL-LWSESRNMV 319
K+ G+ G A + A AD+ +V R++ AG +++G TN EL W +
Sbjct: 89 VKDDVDVAGVPTAFG-TAGEVPPATADSEVVRRLRAAGAVIVGKTNTCELGQWPFTSGPA 147
Query: 320 YGQSNNPYNLCRTTGASSGGEACLVSACGSVLG-LGTDLGGSNRIPALYCGVYGHKLTTG 378
+G + NP++ T G SSGG A V+A G V +G+D GS RIPA + + G K G
Sbjct: 148 FGHTRNPWSRDHTPGGSSGGSAAAVAA-GLVTAAIGSDGAGSVRIPAAWTHLVGIKPQRG 206
Query: 379 SVNS 382
+++
Sbjct: 207 RIST 210
Score = 30.1 bits (68), Expect = 3.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 68 NILDFPVTNVPVGLDGKGLPLG 89
N+L +P NVP G GLP+G
Sbjct: 423 NVLGWPSINVPAGFTSDGLPIG 444
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional.
Length = 468
Score = 110 bits (277), Expect = 5e-26
Identities = 68/192 (35%), Positives = 92/192 (47%), Gaps = 11/192 (5%)
Query: 189 ATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEED 248
A +A+ IR +++ EVV+A I R E VNP LNA+ + A + A
Sbjct: 17 AVGLAEAIRAGRVSAAEVVEAAIARAEAVNPALNALAYAAFDRARDRAARPGS------- 69
Query: 249 ISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIP 308
+ GVP K++ GL G A + A AD+ + G I LG T +P
Sbjct: 70 -QGGFFSGVPTFIKDNVDVAGLPTMHGSDAWTPRPAKADSDFARQFLATGLISLGKTQLP 128
Query: 309 ELLWSES-RNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSV-LGLGTDLGGSNRIPAL 366
E +S S + G NP+N + GASSGG A LV+A G V + D GGS RIPA
Sbjct: 129 EFGFSASTEHPRLGPVRNPWNTDYSAGASSGGSAALVAA-GVVPIAHANDGGGSIRIPAA 187
Query: 367 YCGVYGHKLTTG 378
CG+ G K + G
Sbjct: 188 CCGLVGLKPSRG 199
>gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional.
Length = 497
Score = 107 bits (268), Expect = 7e-25
Identities = 60/211 (28%), Positives = 101/211 (47%), Gaps = 17/211 (8%)
Query: 187 ESATQIAKKIRNKNITSVEVVQAFIERIEQV---NPYLNAMVDTRYTEALEEAKAADQKI 243
E A + + + ++ +A+++RI ++ P LNA+++ +A +A A D +
Sbjct: 6 ERAGALQAAMPAGAAPASQLTRAYLQRIARIDRDGPRLNAVIELN-PDAEADAAALDAE- 63
Query: 244 ALEEDISDKPYLGVPFTSKES-TACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILL 302
+ P G+P K++ A + T G LA G + DA++V R++ AG ++L
Sbjct: 64 -RKAGKVRGPLHGIPVLLKDNIDAADPMPTTAGSLALAGNRPTRDAFLVARLRDAGAVIL 122
Query: 303 GNTNIPELLWSESRNM--------VYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLG 354
G N+ E W+ R+ G + NPY L R+ SS G V+A + + +G
Sbjct: 123 GKANLSE--WANFRSTRSSSGWSARGGLTRNPYALDRSPCGSSSGSGAAVAAGLAAVAIG 180
Query: 355 TDLGGSNRIPALYCGVYGHKLTTGSVNSRGI 385
T+ GS PA G+ G K T G V+ GI
Sbjct: 181 TETDGSITCPAAINGLVGLKPTVGLVSRDGI 211
>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated.
Length = 566
Score = 99.8 bits (249), Expect = 3e-22
Identities = 67/193 (34%), Positives = 103/193 (53%), Gaps = 12/193 (6%)
Query: 201 ITSVEVVQAFIERIEQVN-----PYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYL 255
T+VE+V+A++ RI+ + LNA+V R +AL+EA+A+D + A E + P
Sbjct: 21 TTAVELVKAYLARIDAYDGPATGTALNAVV-VRNPDALKEAEASDARRARGETLG--PLD 77
Query: 256 GVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPELLWSES 315
G+P+T+K+S KGL+ G A K A DA+ +ER++ AG I LG TN+P +
Sbjct: 78 GIPYTAKDSYLVKGLTAASGSPAFKDLVAQRDAFTIERLRAAGAICLGKTNMPPMANGGM 137
Query: 316 RNMVYGQSNNPYNLCRTTGA----SSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGVY 371
+ VYG++ +PYN T SS G +A S GL + S R PA G+
Sbjct: 138 QRGVYGRAESPYNAAYLTAPFASGSSNGAGTATAASFSAFGLAEETWSSGRGPASNNGLC 197
Query: 372 GHKLTTGSVNSRG 384
+ + G ++ RG
Sbjct: 198 AYTPSRGVISVRG 210
>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional.
Length = 502
Score = 85.1 bits (211), Expect = 1e-17
Identities = 54/171 (31%), Positives = 81/171 (47%), Gaps = 20/171 (11%)
Query: 218 NPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSKESTACKGLSNTLGLL 277
NPY A + E K A + +AL+++++ GVP + ST
Sbjct: 69 NPY-GAWYVKTSIKGAAEGKLAGKTVALKDNVA---VAGVPMMNGSSTL----------- 113
Query: 278 ARKGKKADADAYIVERVKTAGGILLGNTNIPELLWSESRNMVY-GQSNNPYNLCRTTGAS 336
+G DA +V R+ AG ++G +L +S + G +NP + + G S
Sbjct: 114 --EGFVPSFDATVVTRLLDAGATIVGKATCEDLCFSGGSHTSDPGPVHNPRDPGYSAGGS 171
Query: 337 SGGEACLVSACGSV-LGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIY 386
S G A LV+A G V + +G D GGS RIP+ +CG+YG K T G V G +
Sbjct: 172 SSGSAALVAA-GEVDMAIGGDQGGSIRIPSAWCGIYGMKPTHGLVPYTGAF 221
>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional.
Length = 536
Score = 83.4 bits (206), Expect = 5e-17
Identities = 80/311 (25%), Positives = 139/311 (44%), Gaps = 41/311 (13%)
Query: 180 VKNKIVLE-SATQIAKKIRNKNITSVEVVQAFIERI---EQVNPYLNAMVDTRYTEALEE 235
+K K V+ + ++ K I + ++ E+ ++ RI +Q LN++ + A+EE
Sbjct: 63 IKEKEVVNATVDELQKMIDDGKLSYEELTSIYLFRIQEHDQNGITLNSVTEIN-PNAMEE 121
Query: 236 AKAADQKIALEEDISDKPYLGVPFTSKES-TACKGLSNTLGLLARKGKKADADAYIVERV 294
A+ DQ+ G+P K++ K + + G K AD DA IV+++
Sbjct: 122 ARKLDQE---RSRNKKSNLYGIPVVVKDNVQTAKVMPTSAGTYVLKDWIADQDATIVKQL 178
Query: 295 KTAGGILLGNTNIPELLWSESRNM------VYGQSNNPYN-LCRTTGASSGGEACLVSAC 347
K G +LG N+ E S M GQ+ NPY + T SS G A +V+A
Sbjct: 179 KEEGAFVLGKANMSEWANYLSFTMPSGYSGKKGQNLNPYGPIKFDTSGSSSGSATVVAAD 238
Query: 348 GSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAE 407
+ L +GT+ GS PA V G + + G V+ GI +++ AGP+ + +
Sbjct: 239 FAPLAVGTETTGSIVAPAAQQSVVGLRPSLGMVSRTGII----PLAETLDTAGPMARTVK 294
Query: 408 D-------LLPYSKCLILPDKLPA-----YNFDKSVDLAKLK----VFYVEEPGDMKVSP 451
D ++ Y + ++ +K+ Y D S+D K K +F V++ + +
Sbjct: 295 DAATLFNAMIGYDEKDVMTEKVKDKERIDYTKDLSIDGLKGKKIGLLFSVDQQDENR--- 351
Query: 452 MSKDMIQAIRK 462
K + + IRK
Sbjct: 352 --KAVAEKIRK 360
>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional.
Length = 454
Score = 80.4 bits (199), Expect = 3e-16
Identities = 63/186 (33%), Positives = 81/186 (43%), Gaps = 17/186 (9%)
Query: 202 TSVEVVQAFIERI-----EQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLG 256
TS +V+A + RI E + + D A A AAD A S P G
Sbjct: 21 TSRALVEAALARIADPAGEGARVFTHVDAD----AARAAADAADALRAAGAAPS--PLAG 74
Query: 257 VPFTSKESTACKGLSNTLGLLARKGKK-ADADAYIVERVKTAGGILLGNTNIPELLWSE- 314
+P + K+ G G A ADA V R++ AG +L+G TN+ E +S
Sbjct: 75 IPVSVKDLFDVAGQVTRAGSRVLADAPPAAADAPAVARLRRAGAVLIGRTNMTEFAFSGL 134
Query: 315 SRNMVYGQSNNPYNLC----RTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGV 370
N YG NP+ R G SS G A V+ + LGTD GGS RIPA CG+
Sbjct: 135 GLNPHYGTPRNPWRRDVGDGRIPGGSSSGAAVSVADGMAAAALGTDTGGSIRIPAALCGL 194
Query: 371 YGHKLT 376
G K T
Sbjct: 195 TGFKPT 200
>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional.
Length = 491
Score = 79.5 bits (196), Expect = 8e-16
Identities = 66/234 (28%), Positives = 111/234 (47%), Gaps = 28/234 (11%)
Query: 192 IAKKIRNKNITSVEVVQAFIERI---EQVNPYLNAMVDTRYTEALEEAKAADQKIALEED 248
I + + +TS E+V ++ RI +Q P +N++++ +A+ A+A D + ++
Sbjct: 18 IQTAMEDGKLTSKELVMYYLHRIAKYDQDGPKINSILEIN-PDAIFIAEALDHERKIKG- 75
Query: 249 ISDKPYLGVPFTSKESTACKG-LSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNI 307
P G+P K++ + + G +A + + DA++V +++ AG ++LG N+
Sbjct: 76 -VRGPLHGIPVLLKDNIETNDSMHTSAGTIALEQHISSEDAFLVTKLREAGAVILGKANM 134
Query: 308 PELLWSESRNMV--Y----GQSNNPYN---LCRTTGASSGGEACLVSACGSVLGLGTDLG 358
EL S M Y GQ+ NPY G SS G A V+A +V+ +GT+
Sbjct: 135 TELANFMSFEMWAGYSARGGQTINPYGTGEDDMFVGGSSTGSAIAVAANFTVVSVGTETD 194
Query: 359 GSNRIPALYCGVYGHKLTTGSVNSRGI----YGRDGKEGKSMLAAGPIVKHAED 408
GS PA+ V G K T G ++ RGI Y +D AGP + D
Sbjct: 195 GSILSPAVQNSVVGIKPTVGLISRRGIIPFTYSQD--------TAGPFARTVTD 240
>gnl|CDD|235698 PRK06102, PRK06102, hypothetical protein; Provisional.
Length = 452
Score = 78.2 bits (193), Expect = 2e-15
Identities = 68/210 (32%), Positives = 99/210 (47%), Gaps = 19/210 (9%)
Query: 188 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTE--ALEEAKAADQKIAL 245
SA Q+A I++ + V+V + ++ I Y + V TE A+ EA+A+ +
Sbjct: 7 SAAQLAVLIQSGALDPVQVAEQALDAIAS---YADQAVFISLTEERAMREAEASSARW-- 61
Query: 246 EEDISDKPYLGVPFTSKESTACKGLSNTLG-LLARKGKKADADAYIVERVKTAGGILLGN 304
S G+P K+ G T G ++ A DA +V + AG + +G
Sbjct: 62 RAGRSLGLLDGIPIAWKDLFDVAGSVTTAGSVVLANAAPASRDAAVVALLARAGMVSIGR 121
Query: 305 TNIPELLWSE-SRNMVYGQSNNPYN--LCRTTGASSGGEACLVSACGSV-LGLGTDLGGS 360
TN+ E +S N YG NP + + R G SS G A V+A G V + +GTD GGS
Sbjct: 122 TNMSEFAFSGLGLNPHYGTPVNPRSTDVPRIPGGSSSGSAVAVAA-GLVPVAMGTDTGGS 180
Query: 361 NRIPALYCGVYGHKLTTGSVNSRGIYGRDG 390
RIPA + G+ G+K T RG Y DG
Sbjct: 181 VRIPAAFNGLVGYKAT------RGRYSMDG 204
Score = 30.8 bits (70), Expect = 2.1
Identities = 19/73 (26%), Positives = 26/73 (35%), Gaps = 9/73 (12%)
Query: 25 LKTKLTELLGDNGVLVFPAAPESAP------YHYATFFRPYNFTY--WALFNILDFPVTN 76
L ++T LG +L P AP FF T N LD +
Sbjct: 354 LIAQVTRELGGA-LLATPTVAHVAPPLAPLEADDDLFFATNLKTLRNTMPGNFLDMCGVS 412
Query: 77 VPVGLDGKGLPLG 89
+P G G+P+G
Sbjct: 413 LPCGTGAAGMPVG 425
>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional.
Length = 600
Score = 77.2 bits (191), Expect = 6e-15
Identities = 63/212 (29%), Positives = 89/212 (41%), Gaps = 51/212 (24%)
Query: 197 RNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEE-DISDKPYL 255
R +T VV A RI V+ + EA A+AA ALE D + P
Sbjct: 17 RAGTLTPRAVVAALYARIAAVDDP--EVWIHLRPEADLLAQAA----ALEARDPAALPLY 70
Query: 256 GVPFTSKE---------STACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTN 306
GVPF K+ + AC + T + DA +V R++ AG I++G TN
Sbjct: 71 GVPFAVKDNIDVAGLPTTAACPAFAYT----------PERDATVVARLRAAGAIVIGKTN 120
Query: 307 I------------PELLWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSV-LGL 353
+ P YG N ++ +G SS G A V+ G V L
Sbjct: 121 LDQFATGLVGTRSP-----------YGAVRNAFDPEYVSGGSSSGSAVAVAL-GLVSFAL 168
Query: 354 GTDLGGSNRIPALYCGVYGHKLTTGSVNSRGI 385
GTD GS R+PA + + G K T G +++RG+
Sbjct: 169 GTDTAGSGRVPAAFNNIVGLKPTLGLLSTRGV 200
>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase. Allophanate
hydrolase catalyzes the second reaction in an
ATP-dependent two-step degradation of urea to ammonia
and C02, following the action of the biotin-containing
urea carboxylase. The yeast enzyme, a fusion of
allophanate hydrolase to urea carboxylase, is designated
urea amidolyase [Central intermediary metabolism,
Nitrogen metabolism].
Length = 561
Score = 74.3 bits (183), Expect = 4e-14
Identities = 50/160 (31%), Positives = 74/160 (46%), Gaps = 11/160 (6%)
Query: 230 TEALEEAKAADQKIALEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAY 289
+ L +A A D + A P GVPF K++ GL T A + DA
Sbjct: 11 EDLLAQAAALDARDA---RPERLPLYGVPFAVKDNIDVAGLPTTAACPAF-AYTPEEDAT 66
Query: 290 IVERVKTAGGILLGNTNIPE----LLWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVS 345
+V ++ AG I++G TN+ + L+ + S YG N ++ +G SS G A V+
Sbjct: 67 VVALLRAAGAIVVGKTNLDQFATGLVGTRSP---YGAVRNAFDPAYISGGSSSGSAVAVA 123
Query: 346 ACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGI 385
LGTD GS R+PA + G K T G V++ G+
Sbjct: 124 RGLVPFALGTDTAGSGRVPAALNNIVGLKPTKGLVSTTGV 163
>gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional.
Length = 395
Score = 70.8 bits (174), Expect = 3e-13
Identities = 40/103 (38%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 284 ADADAYIVERVKTAGGILLGNTNIPELLWSES-RNMVYGQSNNPYNLCRTTGASSGGEAC 342
A A VE++ AG +G T EL +S + +N YG NP R G SS G A
Sbjct: 58 ATRTAPAVEKLLAAGARFVGKTQTDELAFSLNGQNAHYGTPVNPAAPDRVPGGSSSGSAA 117
Query: 343 LVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGI 385
V+ + LGTD GGS R PA +CG+YG + T G ++ G+
Sbjct: 118 AVAGGLADFALGTDTGGSVRAPASFCGLYGLRPTHGRISLEGV 160
Score = 30.0 bits (68), Expect = 3.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 29 LTELLGDNGVLVFPAAPESAPYHYATF 55
L LLG + VL+ P P +AP A F
Sbjct: 306 LAALLGPDAVLLLPTVPGAAPLRGAPF 332
>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated.
Length = 424
Score = 71.0 bits (174), Expect = 4e-13
Identities = 52/151 (34%), Positives = 74/151 (49%), Gaps = 5/151 (3%)
Query: 229 YTE-ALEEAKAADQKIALEEDISDKPYLGVPFTSKESTACKGLSNTLG-LLARKGKKADA 286
Y E A EA AAD + S P G + K+ G G ++ R A A
Sbjct: 22 YAERARAEADAADAR--RRAGRSLGPLDGRIVSIKDLFDVAGEPTLAGSVIRRDAPPAGA 79
Query: 287 DAYIVERVKTAGGILLGNTNIPELLWSE-SRNMVYGQSNNPYNLCRTTGASSGGEACLVS 345
DA IV+R++ AG +++G T++ E ++ N YG+ N + R G SS G A V+
Sbjct: 80 DALIVQRLRNAGAVIIGKTHMTEFAFTPVGLNPHYGEPGNAIDPARIPGGSSSGAAVSVA 139
Query: 346 ACGSVLGLGTDLGGSNRIPALYCGVYGHKLT 376
S + +G+D GGS RIPA G+ G K T
Sbjct: 140 EGTSEIAIGSDTGGSVRIPAALNGLVGFKPT 170
>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional.
Length = 615
Score = 71.6 bits (175), Expect = 4e-13
Identities = 62/214 (28%), Positives = 102/214 (47%), Gaps = 20/214 (9%)
Query: 184 IVLESATQIAKKIRNKNITSVEVVQAFIERI---EQVNPYLNAMVDTRYTEALEEAKAAD 240
I+ T++ + I K ++ E+ ++ RI +Q LNA+ + T + EA+ D
Sbjct: 162 IIGADVTKLQQLIATKQLSYKELAGIYLNRIKKYDQNGLNLNAITEINPT-IIAEAEQLD 220
Query: 241 QKIALEEDISDKPYL-GVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGG 299
+ E+ ++K L G+P K++ K L + G +A K DA IVE +K G
Sbjct: 221 K-----ENTTNKSALYGMPVLLKDNIGTKELPTSAGTVALKDWVIGKDATIVENLKANGA 275
Query: 300 ILLGNTNIPELLWSESRNMVY--------GQSNNPYNLCRTTGASSGGEACLVSACGSVL 351
++LG TN+ E W+ + GQS NPY+ SS G A ++ + +
Sbjct: 276 LILGKTNMSE--WAAGMDEDLPNGYSGKKGQSKNPYSSNLDPSGSSSGSATAATSDFAAI 333
Query: 352 GLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGI 385
+GT+ GS PA G+K + G VN++GI
Sbjct: 334 AIGTETNGSIITPASAQSAVGYKPSQGLVNNKGI 367
>gnl|CDD|166363 PLN02722, PLN02722, indole-3-acetamide amidohydrolase.
Length = 422
Score = 69.1 bits (169), Expect = 1e-12
Identities = 48/139 (34%), Positives = 65/139 (46%), Gaps = 3/139 (2%)
Query: 250 SDKPYLGVPFTSKESTACKGLSNTLGL--LARKGKKADADAYIVERVKTAGGILLGNTNI 307
D P G+ F K+ +G G AR A + A V V G +G T +
Sbjct: 23 HDLPLHGLTFAVKDIFDVEGYVTGFGNPDWARTHSAATSTAPAVLAVLRGGATCVGKTIM 82
Query: 308 PELLWS-ESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPAL 366
E+ +S N YG NP R G SS G A V A LGTD GGS R+PA
Sbjct: 83 DEMAYSINGENAHYGTPTNPIAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPAS 142
Query: 367 YCGVYGHKLTTGSVNSRGI 385
YCG++G + + G+V++ G+
Sbjct: 143 YCGIFGFRPSHGAVSTVGV 161
Score = 33.3 bits (76), Expect = 0.26
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 25 LKTKLTELLGDNGVLVFPAAPESAPYHYAT-----FFRPYNFTYWALFNILDFPVTNVPV 79
L+ LT LLG+ GVLV P P P A FR F+ ++ + F ++P+
Sbjct: 330 LRAALTTLLGEFGVLVIPTVPGPPPKLQADPTTLESFRARAFSLLSIAGVSGFCQVSIPL 389
Query: 80 GLDGKGLPL 88
GL LP+
Sbjct: 390 GLH-DNLPV 397
>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional.
Length = 439
Score = 48.1 bits (115), Expect = 8e-06
Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 19/169 (11%)
Query: 229 YTEALEEAKAADQK----IALEEDISDKPYLGVPFTSKESTA-----CKGLSNTLGLLAR 279
+ +ALEE K + E++ D P FT K++ A S +L
Sbjct: 8 FQKALEELKNDKNNAVSYVFDEKNNKDGPLANCVFTIKDNFATSEGPTHASSKSL----- 62
Query: 280 KGKKADADAYIVERVKTAGGILLGNTNIPEL-LWSESRNMVYGQSNNPYNLCRTTGASSG 338
+ K +A +V+++ AG + + EL L +G NP + + G SS
Sbjct: 63 ENFKPSYNATVVQKLINAGAKPVAKVHCDELGLGGTGLFSAFGLIKNPLDSSKLVGGSSS 122
Query: 339 GEACLVSACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYG 387
G A + S +G+D G S R+PA + G G K + G++ SR YG
Sbjct: 123 GSAATFNKNIS-FAIGSDTGDSVRLPASFIGKVGFKPSYGAI-SR--YG 167
Score = 28.5 bits (64), Expect = 9.9
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 18 AKEHTEILKTKLTELLGDNGVLVFPAAPESAPY 50
AK+ ++K + ++++PA + AP
Sbjct: 337 AKKVRRVIKNYYESIHNKFDIVIYPAYADIAPD 369
>gnl|CDD|198079 smart01011, AMP_N, Aminopeptidase P, N-terminal domain. This
domain is structurally very similar to the creatinase
N-terminal domain. However, little or no sequence
similarity exists between the two families.
Length = 135
Score = 32.2 bits (74), Expect = 0.20
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 18 AKEHTEILKTKLTELLGDNGVLVFPAAPESAPYHYATF-FRPY-NFTY 63
A E+ + +L L V V PA PE + + FR +F Y
Sbjct: 3 AAEYAARRR-RLAAKLFPGSVAVLPAGPEKVRSNDTDYPFRQDSDFYY 49
>gnl|CDD|236388 PRK09133, PRK09133, hypothetical protein; Provisional.
Length = 472
Score = 32.3 bits (74), Expect = 0.67
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 12/80 (15%)
Query: 396 MLAAGPIVKHAEDLLPYS-----KCLILPDKLPAY---NFDKSVDLAKLKVFYVEEPGDM 447
ML G HAE+ LP C I P + V +K+ + +P
Sbjct: 325 MLEGG----HAENALPQRATANVNCRIFPGDTIEAVRATLKQVVADPAIKITRIGDPSPS 380
Query: 448 KVSPMSKDMIQAIRKCVNAL 467
SP+ D+++A+ K A+
Sbjct: 381 PASPLRPDIMKAVEKLTAAM 400
>gnl|CDD|217585 pfam03477, ATP-cone, ATP cone domain.
Length = 88
Score = 29.5 bits (67), Expect = 0.99
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 166 IRRVMTDEAFPLPPVKNKIVLESATQIAKKIRNKNITSVEVVQAFIER 213
IRR + A L PV + E A ++ +++R+ S E +Q +E+
Sbjct: 18 IRRAIEKAARALRPVDPEQAEEIAEEVEEELRDGGEISTEEIQDLVEK 65
>gnl|CDD|114015 pfam05266, DUF724, Protein of unknown function (DUF724). This
family contains several uncharacterized proteins found
in Arabidopsis thaliana and other plants. This region is
often found associated with Agenet domains and may
contain coiled-coil.
Length = 190
Score = 30.9 bits (70), Expect = 1.2
Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 20/91 (21%)
Query: 207 VQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKPYLGVPFTSKESTA 266
VQA R+ ++ + T+ LEE K +++IA E++IS + +
Sbjct: 88 VQALQSRLNKLLSLKD-----DQTKKLEERKGLEKEIA-EKEISRQEL---------DSE 132
Query: 267 CKGLSNTLGLLARKG-----KKADADAYIVE 292
L + L R+ KK D I
Sbjct: 133 IAELERKILELQRQAALLKEKKEAEDKEIAR 163
>gnl|CDD|220932 pfam10996, Beta-Casp, Beta-Casp domain. The beta-CASP domain is
found C terminal to the beta-lactamase domain in
pre-mRNA 3'-end-processing endonuclease. The active site
of this enzyme is located at the interface of these two
domains.
Length = 124
Score = 29.9 bits (68), Expect = 1.2
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 396 MLAAGPIVKHAEDLLPYSKCLIL 418
ML G + + + L P K ++
Sbjct: 88 MLEGGRSLHYLKKLAPDPKNTVI 110
>gnl|CDD|226256 COG3733, TynA, Cu2+-containing amine oxidase [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 654
Score = 31.3 bits (71), Expect = 1.5
Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 16/118 (13%)
Query: 384 GIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPAYNFDKSVDLAKLKVFYVEE 443
G + +G +G+ + ED Y+ P VDL K KV +++
Sbjct: 164 GYFDEEGLKGRRRALKVMWYRDVEDDNYYAH--------PIEGLVAIVDLEKKKVVRIDD 215
Query: 444 PGDMKVSPMSK----DMIQAIRKCVNALKVVSHSEPEDLS-HIKQFRLGYDVWRYWVS 496
V P+ + I K + +K + +PE S I + + WR+ +
Sbjct: 216 HP---VVPLPMKRANYGRERIGKALGPVKPIQIIQPEGKSFTITGDEISWQNWRFRIG 270
>gnl|CDD|227731 COG5444, COG5444, Uncharacterized conserved protein [Function
unknown].
Length = 565
Score = 30.9 bits (70), Expect = 1.8
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Query: 183 KIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQK 242
KI E + I+ + ++ +++ V +AF++ E N Y RY E +EE K A +
Sbjct: 75 KIAFEKS--ISAILEDEPLSNGYVEEAFLKH-ELPNGY------DRYEEIMEEQKKAIKD 125
Query: 243 IALEEDISDKPYLG 256
I D+S LG
Sbjct: 126 IL--SDVSHILDLG 137
>gnl|CDD|238342 cd00619, Terminator_NusB, Transcription termination factor NusB (N
protein-Utilization Substance B). NusB plays a key role
in the regulation of ribosomal RNA biosynthesis in
eubacteria by modulating the efficiency of
transcriptional antitermination. NusB along with other
Nus factors (NusA, NusE/S10 and NusG) forms the core
complex with the boxA element of the nut site of the
rRNA operons. These interactions help RNA polymerase to
counteract polarity during transcription of rRNA operons
and allow stable antitermination. The transcription
antitermination system can be appropriated by some
bacteriophages such as lambda, which use the system to
switch between the lysogenic and lytic modes of phage
propagation.
Length = 130
Score = 29.2 bits (66), Expect = 2.4
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 164 KGIRRVMTDEAFPLPPVKNKIVLESATQIAKK 195
+ I R+ E LP V + +V+ A ++AK+
Sbjct: 78 RAILRLAVYELLFLPDVPHPVVINEAIELAKR 109
>gnl|CDD|214983 smart01027, Beta-Casp, Beta-Casp domain. The beta-CASP domain is
found C terminal to the beta-lactamase domain in
pre-mRNA 3'-end-processing endonuclease. The active site
of this enzyme is located at the interface of these two
domains.
Length = 126
Score = 29.0 bits (66), Expect = 2.5
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 396 MLAAGPIVKHAEDLLPYSKCLIL 418
ML G + + L P + ++
Sbjct: 90 MLTGGRSRHYLKRLAPDPRNTVI 112
>gnl|CDD|222042 pfam13313, DUF4082, Domain of unknown function (DUF4082). This
family appears to be a parallel beta-helix repeated
region that sits between successive Cadherin domains,
pfam00028.
Length = 149
Score = 29.1 bits (66), Expect = 2.7
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 72 FPVTNVPVGL---DGKGLPLGDRVFFSTAGTVTGVR 104
F P DG + LG + S AG +TGVR
Sbjct: 2 FDPAATPAVAASNDGTAVELGVKFTASVAGQITGVR 37
>gnl|CDD|218491 pfam05195, AMP_N, Aminopeptidase P, N-terminal domain. This
domain is structurally very similar to the creatinase
N-terminal domain (pfam01321). However, little or no
sequence similarity exists between the two families.
Length = 134
Score = 29.1 bits (66), Expect = 2.8
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 28 KLTELLGDNGVLVFPAAPE---SAPYHYATFFRPY-NFTY 63
+L LL N + P APE + Y FR +F Y
Sbjct: 12 RLLALLPPNSAAILPGAPEKYRNRDTEYP--FRQDSDFYY 49
>gnl|CDD|151605 pfam11163, DUF2947, Protein of unknown function (DUF2947). This
family of proteins with unknown function appears to be
restricted to Gammaproteobacteria.
Length = 153
Score = 28.8 bits (65), Expect = 3.4
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 6/38 (15%)
Query: 474 EPEDLSHIK---QFRLGYDVWRYWVSKEKD--DFFSDH 506
EDL+ IK Q R VW+ W+S E D FS
Sbjct: 21 SEEDLALIKPLTQARAA-QVWKEWISNESPHADHFSKG 57
>gnl|CDD|232981 TIGR00456, argS, arginyl-tRNA synthetase. This model recognizes
arginyl-tRNA synthetase in every completed genome to
date. An interesting feature of the alignment of all
arginyl-tRNA synthetases is a fairly deep split between
two families. One family includes archaeal, eukaryotic
and organellar, spirochete, E. coli, and Synechocystis
sp. The second, sharing a deletion of about 25 residues
in the central region relative to the first, includes
Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and
Mycobacteria, and the Gram-negative bacterium
Helicobacter pylori [Protein synthesis, tRNA
aminoacylation].
Length = 566
Score = 29.6 bits (67), Expect = 5.0
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 11/73 (15%)
Query: 174 AFPLPPVKNKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVD-TRYTEA 232
AFPL V K A +I K++ I IE++E P++N + + E
Sbjct: 42 AFPLAKVLKKNPRAIAEEIVLKLKTGEI---------IEKVEAAGPFINFFLSPQKLLER 92
Query: 233 LEEAKAADQKIAL 245
L + K QK
Sbjct: 93 LIQ-KILTQKEDY 104
>gnl|CDD|223482 COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and
metabolism].
Length = 539
Score = 29.1 bits (66), Expect = 5.9
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
Query: 268 KGLSNTLGLLARKGKKA-----DADAYIVERVKTAGGIL 301
L+ TL +A KG A ADA IV+ V+ AGG+L
Sbjct: 193 PDLAKTLEEIAEKGPDAFYKGEIADA-IVKAVQKAGGLL 230
>gnl|CDD|184487 PRK14071, PRK14071, 6-phosphofructokinase; Provisional.
Length = 360
Score = 28.9 bits (65), Expect = 7.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 273 TLGLLARKGKKADADAYIVERVKTAGGILLGNTN 306
T GL+AR + + D V+ + GG +LG TN
Sbjct: 45 TQGLMARPPQYIELDLDQVDDLLRMGGTILGTTN 78
>gnl|CDD|217659 pfam03652, UPF0081, Uncharacterized protein family (UPF0081).
Length = 134
Score = 27.4 bits (62), Expect = 8.6
Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 18/97 (18%)
Query: 174 AFPLPPVKNKIVLESATQIAKKIRNKNITSV----------------EVVQAFIERIEQV 217
A PL ++ K ++A+ I+ + + V+ F R+++
Sbjct: 25 ASPLETIRRKNGNPDLEELAELIKEWQPDGIVVGLPLNMDGSEGEMTKRVRKFARRLKKR 84
Query: 218 NPYLNAMVDTRYT--EALEEAKAADQKIALEEDISDK 252
+VD R T EA + A +++ D
Sbjct: 85 FGLPVELVDERLTTVEAERILREAGLSRKKRKEVVDS 121
>gnl|CDD|176521 cd08579, GDPD_memb_like, Glycerophosphodiester phosphodiesterase
domain of uncharacterized bacterial
glycerophosphodiester phosphodiesterases. This
subfamily corresponds to the glycerophosphodiester
phosphodiesterase domain (GDPD) present in
uncharacterized bacterial glycerophosphodiester
phosphodiesterases. In addition to a C-terminal GDPD
domain, most members in this family have an N-terminus
that functions as a membrane anchor.
Length = 220
Score = 28.3 bits (64), Expect = 9.3
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 9/70 (12%)
Query: 183 KIV-LESATQIAKKIRNK--------NITSVEVVQAFIERIEQVNPYLNAMVDTRYTEAL 233
KI L+ +AK ++ K S ++V+ F++ +Q V + +
Sbjct: 81 KIPSLDEYLALAKGLKQKLLIELKPHGHDSPDLVEKFVKLYKQNLIENQHQVHSLDYRVI 140
Query: 234 EEAKAADQKI 243
E+ K D KI
Sbjct: 141 EKVKKLDPKI 150
>gnl|CDD|178206 PLN02596, PLN02596, hexokinase-like.
Length = 490
Score = 28.3 bits (63), Expect = 9.9
Identities = 27/99 (27%), Positives = 35/99 (35%), Gaps = 13/99 (13%)
Query: 33 LGDNGVLVFPAAPESAPYHYATFFRPYNF---TYWALFNILDFPVTNVPVGLDGKGLPLG 89
+G N V PA ++ P + T W FN P+T LD + G
Sbjct: 253 MGTNAAYVEPA--QAIPKWQSPSPESQEIVISTEWGNFNSCHLPITEFDASLDAESSNPG 310
Query: 90 DRVFFS-TAGTVTGVRLDSIPEQARRFFWSKKCEDALRG 127
R+F T+G G E RR E AL G
Sbjct: 311 SRIFEKLTSGMYLG-------EIVRRVLLKMAEETALFG 342
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.417
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,336,182
Number of extensions: 2591793
Number of successful extensions: 2663
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2595
Number of HSP's successfully gapped: 64
Length of query: 507
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 406
Effective length of database: 6,457,848
Effective search space: 2621886288
Effective search space used: 2621886288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.1 bits)