RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7560
(507 letters)
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH,
oxazole, oxadiazole, endoca degradation, membrane
protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB:
2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A*
2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A*
3qj9_A* 3qkv_A*
Length = 573
Score = 282 bits (723), Expect = 8e-89
Identities = 83/344 (24%), Positives = 150/344 (43%), Gaps = 26/344 (7%)
Query: 138 FSSFSKRWF--KGIRRVMTGFGDGQRW-FKGIRRVMTDEAFPLPPV-KNKIVLESATQIA 193
S + RW + R T QR + + + + P + ++ Q+
Sbjct: 18 GSHMASRWTGRQKARGAATRARQKQRASLETMDKAVQRFRLQNPDLDSEALLTLPLLQLV 77
Query: 194 KKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEEDISDKP 253
+K+++ ++ V ++ + +VN N + + ++A Q
Sbjct: 78 QKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQAPRQG----------L 127
Query: 254 YLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNIPE-LLW 312
GVP + KE + KG +TLGL +G +++D +V+ +K G + +TN+P+ +
Sbjct: 128 LYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMFS 187
Query: 313 SESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALYCGVYG 372
+ N ++GQ+ NP+ ++ G SSGGE L+ + GS LGLGTD+GGS R P+ +CG+ G
Sbjct: 188 YDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICG 247
Query: 373 HKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPA-------- 424
K T ++ G+ G + L+ GP+ + E L K L+
Sbjct: 248 LKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDPTVPPLP 307
Query: 425 YNFDKSVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALK 468
+ + L+V Y E SP M +A+ + L+
Sbjct: 308 FREEVYRSSRPLRVGYYETDNYTMPSP---AMRRALIETKQRLE 348
Score = 47.5 bits (113), Expect = 8e-06
Identities = 14/66 (21%), Positives = 21/66 (31%), Gaps = 3/66 (4%)
Query: 23 EILKTKLTELLGDNGV--LVFPAAPESAPYHYATFFRPYNFTYWALFNILDFPVTNVPVG 80
E+ + + + L+ P A +Y L+N LDFP VPV
Sbjct: 446 EMYRQSVIAQWKAMNLDVLLTPMLG-PALDLNTPGRATGAVSYTMLYNCLDFPAGVVPVT 504
Query: 81 LDGKGL 86
Sbjct: 505 TVTAED 510
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon
degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Length = 493
Score = 206 bits (526), Expect = 9e-61
Identities = 88/300 (29%), Positives = 130/300 (43%), Gaps = 40/300 (13%)
Query: 188 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEE 247
AT A+ +R+ I+ E+++A I ++ VNP +NA++ + +A E++ A
Sbjct: 9 DATAQAELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESELASG------ 62
Query: 248 DISDKPYLGVPFTSKESTAC-KGLSNTLG--LLARKGKKADADAYIVERVKTAGGILLGN 304
P+ GVP+ K+ T +G NT + G +AD DAY V+R++ AG +LLG
Sbjct: 63 -----PFAGVPYLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGK 117
Query: 305 TNIPEL-LWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSV-LGLGTDLGGSNR 362
TN PE+ + +G + NP+NL R+ G SSGG V A + G D G+ R
Sbjct: 118 TNTPEMGNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAV-AAALSPVAHGNDAAGAVR 176
Query: 363 IPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAED---LL--------- 410
IPA CGV G K T G + S G D G + D LL
Sbjct: 177 IPASVCGVVGLKPTRGRI-SPGPLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSGHRPG 235
Query: 411 -PYSKCLILPDKLPAYNFDKSVDLAKLKVFYVEEP--GDMKVSPMSKDMIQAIRKCVNAL 467
+ P Y S + L+V + GD + P + A R AL
Sbjct: 236 DTFC----APTASRPYAQGISENPGSLRVGVLTHNPVGDFALDP---ECAAAARGAAAAL 288
Score = 33.7 bits (78), Expect = 0.13
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 37 GVLVFPAAPESAPYHYATFFRPYNFTYW-ALFNILDFPVTNVPVGLDGKGLPLG 89
G L+ + A + FN+ P ++P+G+ G+P+G
Sbjct: 397 GELMLAKGTDLEGRQSAFISGSLQMLAFTVPFNVSGQPAISLPIGMSSDGMPIG 450
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on
protein structural and functional analyses; 2.00A
{Thermus thermophilus}
Length = 434
Score = 163 bits (414), Expect = 4e-45
Identities = 62/229 (27%), Positives = 94/229 (41%), Gaps = 23/229 (10%)
Query: 188 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEE 247
+ + + T + +++ +ER + NA+ A +EA A +++ +
Sbjct: 2 DLLEAKRLLETGRTTPLALLEEALERAKAFQD-RNALAYLDEEAARKEALALTEELRRGQ 60
Query: 248 DISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNI 307
P G+P T K+ KG+ G A + +A V R++ AG +L TN+
Sbjct: 61 VRG--PLHGLPLTVKDLFPVKGMPTRAGTKAPLPPLPE-EARAVRRLREAGALLFAKTNM 117
Query: 308 PELLW-SESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPAL 366
E+ N G N + R G SSGG A V+ + LGTD GGS RIPA
Sbjct: 118 HEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDTGGSIRIPAG 177
Query: 367 YCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLA-------AGPIVKHAED 408
+ GV G K + G V S G L AGP+ + D
Sbjct: 178 FNGVVGFKPSYGRV-SL--EG--------ALPLSRSTDHAGPLTRSVRD 215
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, ATP-binding, nucleotide-bindi protein
biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB:
2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Length = 485
Score = 155 bits (395), Expect = 4e-42
Identities = 62/231 (26%), Positives = 109/231 (47%), Gaps = 25/231 (10%)
Query: 188 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEE 247
S + I++K I +VV+ + IE+ +P + + + A+++A+ D+ A ++
Sbjct: 7 SVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQ 66
Query: 248 DISDKPYLGVPFTSKESTACKGLSNTLG--LLARKGKKADADAYIVERVKTAGGILLGNT 305
G+P K++ GL T +L G ++ ++E++ +L+G
Sbjct: 67 MDG--KLFGIPMGIKDNIITNGLETTCASKMLE--GFVPIYESTVMEKLHKENAVLIGKL 122
Query: 306 NIPEL-LWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIP 364
N+ E + + + ++ NP++ G SSGG A V+A L LG+D GGS R P
Sbjct: 123 NMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQP 182
Query: 365 ALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLA-------AGPIVKHAED 408
A YCGV G K T G V SR +G ++A GP+ ++ +D
Sbjct: 183 AAYCGVVGMKPTYGRV-SR--FG--------LVAFASSLDQIGPLTRNVKD 222
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, protein biosynthesis; HET: ADP; 2.30A
{Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Length = 478
Score = 150 bits (381), Expect = 3e-40
Identities = 68/231 (29%), Positives = 114/231 (49%), Gaps = 31/231 (13%)
Query: 188 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEE 247
S +++ + ++ ++ EVV++F +R Q + A + Y +AL++A++ ++
Sbjct: 6 SLSELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLKEREL--- 62
Query: 248 DISDKPYLGVPFTSKESTACKGLSNTLG--LLARKGKKADADAYIVERVKTAGGILLGNT 305
P G+P K++ +G T +L A DA ++ER+K AG +++G T
Sbjct: 63 -----PLFGIPIAVKDNILVEGEKTTCASKILE--NFVAPYDATVIERLKKAGALIVGKT 115
Query: 306 NIPEL-LWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIP 364
N+ E + S + + + NP++L R G SSGG A V+ + + LG+D GGS R P
Sbjct: 116 NLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVSLGSDTGGSIRQP 175
Query: 365 ALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLA-------AGPIVKHAED 408
A +CGV G K T G V SR YG ++A G + ED
Sbjct: 176 ASFCGVIGIKPTYGRV-SR--YG--------LVAFASSLDQIGVFGRRTED 215
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double
layers of alpha helices on TOP and bottom, hydrolase;
HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP:
c.117.1.1 PDB: 1m21_A*
Length = 503
Score = 150 bits (382), Expect = 3e-40
Identities = 67/239 (28%), Positives = 112/239 (46%), Gaps = 35/239 (14%)
Query: 188 SATQIAKKIRNKNITSVEVVQAFIERIEQVN---PYLNAMVDTRYTEALEEAKAADQKIA 244
+ ++ + S + QA+++RI ++ P L A++ +AL+EA D++
Sbjct: 12 DVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVI-ELNPDALKEAAERDRERR 70
Query: 245 LEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGN 304
P G+P K++ ++ + G LA +G + D DAY+V R++ AG ++LG
Sbjct: 71 DGRLRG--PLHGIPLLLKDNINAAPMATSAGSLALQGFRPD-DAYLVRRLRDAGAVVLGK 127
Query: 305 TNIPELLW-----SESRNM---VYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTD 356
TN+ E W ++S + GQ+ NPY + + SS G A V+A + + +GT+
Sbjct: 128 TNLSE--WANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAIGTE 185
Query: 357 LGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLA-------AGPIVKHAED 408
GS PA GV G K T G V SR G ++ AGP+ + D
Sbjct: 186 TDGSIVCPAAINGVVGLKPTVGLV-SR--DG--------IIPISFSQDTAGPMARSVAD 233
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab,
ATP-binding, aminoacyl-tRNA synthetase, ligas
nucleotide-binding, protein biosynthesis, ligase-RNA
comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Length = 471
Score = 149 bits (380), Expect = 4e-40
Identities = 73/231 (31%), Positives = 117/231 (50%), Gaps = 33/231 (14%)
Query: 188 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEE 247
A +I ++ ++ +EV QA+++R+++++P L A + + LEEA+A D + L
Sbjct: 2 LAHEIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFL-SLNERLLEEAEAVDPGLPLA- 59
Query: 248 DISDKPYLGVPFTSKESTACKGLSNTLG--LLARKGKKADADAYIVERVKTAGGILLGNT 305
G+ K++ A +GL T G LL +A V R+K G ++LG T
Sbjct: 60 --------GLVVAVKDNIATRGLRTTAGSRLLE--NFVPPYEATAVARLKALGALVLGKT 109
Query: 306 NIPEL-LWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIP 364
N+ E + S + + + + NP++ R G SSGG A ++A + L LG+D GGS R P
Sbjct: 110 NLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQP 169
Query: 365 ALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLA-------AGPIVKHAED 408
A +CGVYG K T G V SR +G ++A GP+ + D
Sbjct: 170 AAFCGVYGLKPTYGRV-SR--FG--------LIAYASSLDQIGPMARSVRD 209
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP:
c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A
1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Length = 414
Score = 148 bits (377), Expect = 4e-40
Identities = 54/288 (18%), Positives = 93/288 (32%), Gaps = 46/288 (15%)
Query: 188 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEE 247
S + ++I ++ + IE ++A V +++ A L
Sbjct: 3 SLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFV------RHDKSARAQASGPLR- 55
Query: 248 DISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNI 307
G+ K+ + +G +G + +DA +V +K AG ++G T
Sbjct: 56 --------GIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTT 107
Query: 308 PELLWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALY 367
+ + NP+N + G +S G A V A L LGT GGS PA Y
Sbjct: 108 TAFASRDP-----TATLNPHNTGHSPGGASSGSAAAVGAGMIPLALGTQTGGSVIRPAAY 162
Query: 368 CGVYGHKLTTGSVNSRGIYGRDGKEGKSMLA-------AGPIVKHAEDLLPYSKCLILPD 420
CG K + + G + G AEDL +
Sbjct: 163 CGTAAIKPSFRML-PT--VG--------VKCYSWALDTVGLFGARAEDLARGLLAMTGRS 211
Query: 421 KLPAYNFDKSVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALK 468
+ V ++ V + V P Q ++ + A +
Sbjct: 212 EF-----SGIVPAKAPRIGVVRQEFAGAVEP---AAEQGLQAAIKAAE 251
Score = 31.7 bits (73), Expect = 0.56
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 18 AKEHTEILKTKLTELLGDNGVLVFPAAPESAPYHYATFFRPYNFTYWALFNILDFPVTNV 77
A+ + +L E+ VL+ +AP +AP + L+ ++ P NV
Sbjct: 318 ARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALASTGDPRYNR--LWTLMGNPCVNV 375
Query: 78 PVGLDGKGLPLG 89
PV G GLP+G
Sbjct: 376 PVLKVG-GLPIG 386
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural
genomics, joint center for structura genomics, JCSG;
HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP:
c.117.1.1 PDB: 3al0_A*
Length = 476
Score = 135 bits (342), Expect = 7e-35
Identities = 65/231 (28%), Positives = 107/231 (46%), Gaps = 38/231 (16%)
Query: 188 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEE 247
I + ++ ++ Q +E I++++P++ A + R ++E+
Sbjct: 8 RKLTIEECLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVEKKG---------- 57
Query: 248 DISDKPYLGVPFTSKESTACKGLSNTLG--LLARKGKKADADAYIVERVKTAGGILLGNT 305
+ G+P K++ G+ T +L ++ DA +V+++K AG +++G
Sbjct: 58 -----KFWGIPVAIKDNILTLGMRTTCASRILE--NYESVFDATVVKKMKEAGFVVVGKA 110
Query: 306 NIPEL-LWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIP 364
N+ E + S + + + NP++L R G SSGG A VSA V LG+D GGS R P
Sbjct: 111 NLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQP 170
Query: 365 ALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLA-------AGPIVKHAED 408
A CGV G+K T G V SR YG ++A GPI K D
Sbjct: 171 ASLCGVVGYKPTYGLV-SR--YG--------LVAFASSLDQIGPITKTVRD 210
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB:
3a1i_A
Length = 521
Score = 127 bits (322), Expect = 6e-32
Identities = 57/239 (23%), Positives = 81/239 (33%), Gaps = 23/239 (9%)
Query: 182 NKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQ 241
+ + K R + ++ + ++Q+ T A+ A
Sbjct: 12 DAAARHYGITLDKTARLEWPALIDGALGSYDVVDQLYADEATPPTTSREHAVPSASENPL 71
Query: 242 KIALEEDI----SDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTA 297
SD G K++ G+ G +G DA +V R+ A
Sbjct: 72 SAWYVTTSIPPTSDGVLTGRRVAIKDNVTVAGVPMMNGSRTVEGFTPSRDATVVTRLLAA 131
Query: 298 GGILLGNTNIPEL-LWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTD 356
G + G +L S G NP++ R G SSGG A LV+ +G D
Sbjct: 132 GATVAGKAVCEDLCFSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGD 191
Query: 357 LGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLA-------AGPIVKHAED 408
GGS RIPA +CGV GHK T G V G GPI + D
Sbjct: 192 QGGSIRIPAAFCGVVGHKPTFGLV-PY--TG--------AFPIERTIDHLGPITRTVHD 239
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.5 bits (125), Expect = 2e-07
Identities = 50/319 (15%), Positives = 91/319 (28%), Gaps = 104/319 (32%)
Query: 56 FRPYNFT----YWALFNIL--DFPVTNVPV-GLDGKG---LPLGDRVFFSTAGTVTGVRL 105
F YN + Y L L P NV + G+ G G + V L
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV-------------ALDVCL 172
Query: 106 DSIPEQARRF--FW----SKKCEDALRGMCLRSFWETLFSSFSKRWFKGIRRVMTGFGDG 159
+ F FW + + + M L+ + +++ R +
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEM-LQKLLYQIDPNWTSR-SDHSSNIKLRIHSI 230
Query: 160 QRWFKGIRRVMTDEAFP--LPPVKNKIVLESATQIAKKIRNKNITSVEVVQAF-IE-RIE 215
Q +RR++ + + L +VL N+ + + AF + +I
Sbjct: 231 QAE---LRRLLKSKPYENCL------LVLL------------NVQNAKAWNAFNLSCKI- 268
Query: 216 QVNPYLNAMVDTRY---TEALEEAKAA-----DQKIALEEDISDK---PYLGVPFTSKES 264
++ TR+ T+ L A + L D YL
Sbjct: 269 --------LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 265 TACKGLSNTLGLLA---RKG-------KKADADAYI------VERVKTAG--------GI 300
L ++A R G K + D + ++ A +
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 301 LLGNTNIP----ELLWSES 315
+ +IP L+W +
Sbjct: 381 FPPSAHIPTILLSLIWFDV 399
Score = 48.7 bits (115), Expect = 4e-06
Identities = 65/406 (16%), Positives = 115/406 (28%), Gaps = 116/406 (28%)
Query: 167 RRVMT----DEAFPLPPVKNKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVN-PYL 221
+ +++ D + + + + +K E+VQ F+E + ++N +L
Sbjct: 43 KSILSKEEIDHIIMSKDAVSGTLR-----LFWTLLSKQ---EEMVQKFVEEVLRINYKFL 94
Query: 222 NAMVDTRYTE-ALEEAKAADQKIALEEDISDKPYLGVPFTSKESTACKGLSN-------T 273
+ + T + ++ +Q+ L D V + L
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 274 L-GLLARKGKK--ADADAYIVERVKTA--GGIL---LGNTNIPELLWSESRNMVY----- 320
+ G+L GK A D + +V+ I L N N PE + + ++Y
Sbjct: 155 IDGVLG-SGKTWVA-LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 321 ------GQSNNPYNL------CRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPA--L 366
SN + R S E CL+ VL ++ + A L
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-----VL---LNVQNAKAWNAFNL 264
Query: 367 YCGVYGHKLTTGSVN------------SRGIYGRDG---KEGKSMLAAGPIVKHAEDLLP 411
C + LTT + E KS+L + LP
Sbjct: 265 SCKIL---LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK--YLDCRPQDLP 319
Query: 412 YSKCLILPDKLPAYNFDKSVDLAKLKVF-----YVEEPGDMKVSPMSKDMIQAIRKCVNA 466
P +L S+ ++ + K++ I +N
Sbjct: 320 REVLTTNPRRL-------SIIAESIRDGLATWDNWKHVNCDKLT-------TIIESSLNV 365
Query: 467 LKVVSHSEPEDLSHIKQFR-LG---YDVW-------RYWVSKEKDD 501
L EP + K F L W K D
Sbjct: 366 L------EPAEYR--KMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Score = 44.8 bits (105), Expect = 6e-05
Identities = 44/280 (15%), Positives = 79/280 (28%), Gaps = 88/280 (31%)
Query: 247 EDISDKPYLGVPFTSKE-------STACKGLSNTLGLLARKGKK--------ADADAY-- 289
+D+ D P + + +E A G L K ++ Y
Sbjct: 36 KDVQDMP-KSI-LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF 93
Query: 290 IVERVKTAGGILLGNTNIPEL---LWSESRNMVY--GQSNNPYNLCRTTGASSGGEACLV 344
++ +KT P + ++ E R+ +Y Q YN+ R
Sbjct: 94 LMSPIKT-------EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ----------- 135
Query: 345 SACGSVLGLGTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVK 404
L L L PA + G GS GK+ +A
Sbjct: 136 ----PYLKLRQAL--LELRPAKNVLIDGVL---GS-------------GKTWVA------ 167
Query: 405 HAEDLLPYSKCLILPDK-----LPAYNFDKSVDLAKLKVFYVEEPGDMKVSPMSKDMIQA 459
+ L Y + K L N ++V L L+ + + D
Sbjct: 168 -LDVCLSYKVQCKMDFKIFWLNLKNCNSPETV-LEMLQKLLYQIDPNWTSRS---DHSSN 222
Query: 460 IRKCVNALKVVSHSEPEDLSHIKQFRLGY----DVWRYWV 495
I+ +++++ +E L K + +V
Sbjct: 223 IKLRIHSIQ----AELRRLLKSKPYENCLLVLLNVQNAKA 258
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 2e-04
Identities = 97/569 (17%), Positives = 171/569 (30%), Gaps = 172/569 (30%)
Query: 6 CSLCRMVPSDQWA------KEHTEILKTKLTELLGDNGVLVFPAAPESAPYHYATFFRPY 59
L +VP+ + ++ +IL D+ P + F
Sbjct: 18 HVL--LVPTASFFIASQLQEQFNKILPEPTEGFAADD-------EPTTPAELVGKF---- 64
Query: 60 NFTYWALFNILDF---PVTNVPVGLDGKGLPLGDRVFFST--AG----TVTGVRLDSIPE 110
L + V VG + L L F + G + +L +
Sbjct: 65 ----------LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALA-AKLLQEND 113
Query: 111 --QARRFFWSKKCEDALRGMCLRSFWETLFSSFSKRWFKGIRRVMTGFGDGQ----RWFK 164
+ K A R M R F + S+ + +G +++ FG GQ +F+
Sbjct: 114 TTLVKTKELIKNYITA-RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG-GQGNTDDYFE 171
Query: 165 GIRRVMTDEAFPLPPVKNKIVLESATQIAKKIRNKNITSVEVVQAFIERI-EQVNPYLNA 223
+R + T +V I+ E ++ +
Sbjct: 172 ELRDLYQ------------------------------TYHVLVGDLIKFSAETLSELIRT 201
Query: 224 MVDTR--YTEALEEAKAADQKIALE--EDISDKPYL-GVPFT---------SKESTACKG 269
+D +T+ L + LE + DK YL +P + + K
Sbjct: 202 TLDAEKVFTQGL------NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKL 255
Query: 270 LSNTLGLLARKGKKADADAYIVERVKTAGGILLGNT------NIPE----LLWSESR-NM 318
L T G L K A + + TA I ++ ++ + L + R
Sbjct: 256 LGFTPGELRSYLKGA---TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE 312
Query: 319 VYGQSNNPYNLCRTTGASSGGEAC--LVSACGSVLGLGTD------------LGGSNRIP 364
Y ++ P ++ + ++ G L S+ L + L ++
Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSPML-----SISNLTQEQVQDYVNKTNSHLPAGKQVE 367
Query: 365 -ALYCG-----VYGH--------------KLTTGSVNSRGIY-GRDGKEGKSMLAAGPIV 403
+L G V G K +G SR + R K L P+
Sbjct: 368 ISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL---PVA 424
Query: 404 K--HAEDLLPYSKCLILPDKLPAYNFD-KSVDLAKLKVFYVEEPGDMK-----VSPMSKD 455
H+ L+P S LI D L N + D+ ++ V+ + D++ +S D
Sbjct: 425 SPFHSHLLVPASD-LINKD-LVKNNVSFNAKDI-QIPVYDTFDGSDLRVLSGSISERIVD 481
Query: 456 MIQAIRKCVNALKVVSHSEPEDLSHIKQF 484
I IR V +HI F
Sbjct: 482 CI--IRLPVKWETTTQFKA----THILDF 504
Score = 35.8 bits (82), Expect = 0.035
Identities = 36/187 (19%), Positives = 53/187 (28%), Gaps = 64/187 (34%)
Query: 5 LCSLCRMV-----PS--DQWAKEHTEILKTKLTELLGDNGVLVFPAAPESAPYHYATFFR 57
L L + PS DQ +E KL F P ++P+H
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPFSE---RKLK------FSNRF--LPVASPFH-----S 429
Query: 58 PYNFTYWALFNILDFPVTNVPVGLDGKGL--PLGDRVFFSTAGTVTGVRL----DSIPEQ 111
L D NV + K + P V+ T G L SI E+
Sbjct: 430 HLLVPASDLI-NKDLVKNNVS--FNAKDIQIP----VY----DTFDGSDLRVLSGSISER 478
Query: 112 ARRFFWSKKCEDALRGMCLRSFWETLFSSFSKRWF--------KGIRRVMTGFGDGQRWF 163
+ +R WET + F G+ + DG
Sbjct: 479 I--------VDCIIRLPV---KWETT-TQFKATHILDFGPGGASGLGVLTHRNKDG---- 522
Query: 164 KGIRRVM 170
G+R ++
Sbjct: 523 TGVRVIV 529
Score = 35.8 bits (82), Expect = 0.038
Identities = 52/251 (20%), Positives = 71/251 (28%), Gaps = 100/251 (39%)
Query: 127 GMCL---------RSFW--------ETL-FS--------------SFSKRWFKGIRR--- 151
GM + + W +T FS F K IR
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYS 1689
Query: 152 VMT--GFGDGQRW----FKGIRRVMTDEAFPLPPVKNKIVLESATQIAKKIRNKNITSVE 205
M DG+ FK I T F K + TQ A +T +E
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE--KGLLSATQFTQPA-------LTLME 1740
Query: 206 VVQAFIERIEQVNPYLNAMVDTR----------YTEALEEAKAADQKIALEEDISDKPYL 255
A E ++ ++ Y AL A AD + I +
Sbjct: 1741 K--AAFEDLKS-----KGLIPADATFAGHSLGEYA-AL--ASLAD---VM--SIESLVEV 1785
Query: 256 ----G------VPFTSKESTACKGLSNTLGLLA----RKGKKADADA--YIVERVKTAGG 299
G VP G SN G++A R +A Y+VERV G
Sbjct: 1786 VFYRGMTMQVAVPRDEL------GRSNY-GMIAINPGRVAASFSQEALQYVVERVGKRTG 1838
Query: 300 ILLG--NTNIP 308
L+ N N+
Sbjct: 1839 WLVEIVNYNVE 1849
Score = 34.6 bits (79), Expect = 0.084
Identities = 44/232 (18%), Positives = 70/232 (30%), Gaps = 80/232 (34%)
Query: 19 KEHTEILKTKLTELLGDNGVLVFPAAPESAPYHYATFFRPYNFTYWALF--NILDFPVTN 76
KE E T T + G+L AT FT AL F
Sbjct: 1708 KEINEHS-TSYT-FRSEKGLL------------SAT-----QFTQPALTLMEKAAFED-- 1746
Query: 77 VPVGLDGKGLPLGDRVFFSTAG----------TVTGVRLDSIPEQARRFFWSKKCEDAL- 125
L KGL D F AG ++ V + E +
Sbjct: 1747 ----LKSKGLIPADATF---AGHSLGEYAALASLADV-MS---------I-----ESLVE 1784
Query: 126 ----RGMCLRSFWETLFSSFSKRWFKGIR--RVMTGFG-DGQRWFKGIRRVMTDEAFPLP 178
RGM ++ S I RV F + ++ + RV + +
Sbjct: 1785 VVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV--VERVGKRTGWLVE 1842
Query: 179 PVKN------KIV-------LESATQIAKKIRNKNITSVEVVQAF-IERIEQ 216
V N + V L++ T + I+ + I +E+ ++ +E +E
Sbjct: 1843 IV-NYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.24
Identities = 9/30 (30%), Positives = 11/30 (36%), Gaps = 9/30 (30%)
Query: 20 EHTEILKTKLTELLGDNGVLVFPAAPESAP 49
E + K KL L A +SAP
Sbjct: 18 EKQAL-K-KLQASLK-------LYADDSAP 38
Score = 31.8 bits (71), Expect = 0.25
Identities = 6/31 (19%), Positives = 12/31 (38%), Gaps = 6/31 (19%)
Query: 403 VKHAEDLL-PYSKCLILPDKLPAYNFDKSVD 432
+K + L Y+ D PA +++
Sbjct: 22 LKKLQASLKLYA-----DDSAPALAIKATME 47
Score = 29.9 bits (66), Expect = 1.2
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Query: 458 QAIRKCVNALKVVS-HSEPEDLSHIK 482
QA++K +LK+ + S P L+ IK
Sbjct: 20 QALKKLQASLKLYADDSAPA-LA-IK 43
>3rva_A Organophosphorus acid anhydrolase; PITA-bread fold, binuclea
center, BI-functional, prolidase, nerve agents, XAA-Pro
DIP hydrolase; 1.80A {Alteromonas macleodii}
Length = 451
Score = 31.9 bits (73), Expect = 0.48
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 9/54 (16%)
Query: 18 AKEHTEILKTKLTELL---GDNGVLVFPAAPESAPY---HYATFFRPY-NFTYW 64
++H E L+ + E L G +G+++ + HY F+ F W
Sbjct: 8 YQQHIEELQARTREALQREGLDGLVIHSGQGKRLFLDDNHYP--FKVNPQFKAW 59
>3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase,
manganese, metal-binding, metalloprotease, protease;
2.30A {Alteromonas SP} PDB: 3l7g_A*
Length = 517
Score = 31.3 bits (71), Expect = 0.84
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 9/54 (16%)
Query: 18 AKEHTEILKT---KLTELLGDNGVLVFPAAPESAPY---HYATFFRPY-NFTYW 64
EH L+ ++ E +GV+ + +Y F+ F W
Sbjct: 8 YAEHIATLQKRTREIIERENLDGVVFHSGQAKRQFLDDMYYP--FKVNPQFKAW 59
>2e0w_A Gamma-glutamyltranspeptidase; NTN hydrolase, precursor, gamma-GTP,
post-translational PROC maturation, transferase; 2.55A
{Escherichia coli K12} SCOP: d.153.1.6
Length = 556
Score = 30.6 bits (70), Expect = 1.2
Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
Query: 270 LSNTLGLLARKGKKA-----DADAYIVERVKTAGGIL 301
L+ +L ++A G A+ I + ++ GG++
Sbjct: 203 LAKSLEMIAENGPDEFYKGTIAEQ-IAQEMQKNGGLI 238
>2dg5_A Gamma-glutamyltranspeptidase; gamma-glutamyltransferase, GGT,
gamma-GT, glutathione; HET: GLU; 1.60A {Escherichia coli
K12} SCOP: d.153.1.6 PDB: 2dbu_A 2dbw_A* 2dbx_A* 2e0x_A
2e0y_A 2z8i_A* 2z8j_A* 2z8k_A*
Length = 366
Score = 30.6 bits (70), Expect = 1.2
Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
Query: 270 LSNTLGLLARKGKKA-----DADAYIVERVKTAGGIL 301
L+ +L ++A G A+ I + ++ GG++
Sbjct: 203 LAKSLEMIAENGPDEFYKGTIAEQ-IAQEMQKNGGLI 238
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center
for structural genomics of infectious DISE; HET: SO4;
2.89A {Bacillus anthracis}
Length = 427
Score = 30.7 bits (70), Expect = 1.3
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 6/40 (15%)
Query: 28 KLTELLGDNGVLVFPAAPE---SAPYHYATFFRPY-NFTY 63
+L L D + + A SA HY F P NF Y
Sbjct: 12 RLVNTLPDESITILFAGQAPHMSADAHYK--FVPNRNFYY 49
>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific
enzyme, aminopeptidas manganese enzyme, protease,
manganese; HET: CSO; 1.56A {Escherichia coli} SCOP:
c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A*
1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A*
2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A*
2bwu_A* 2bww_A* ...
Length = 440
Score = 30.3 bits (69), Expect = 1.5
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 6/40 (15%)
Query: 28 KLTELLGDNGVLVFPAAPE---SAPYHYATFFRPY-NFTY 63
L E + + AAPE SA Y +R +F Y
Sbjct: 14 ALVEQMQPGSAALIFAAPEVTRSADSEYP--YRQNSDFWY 51
>2v36_A Gamma-glutamyltranspeptidase large chain; transferase, glutathione
biosynthesis, gamma-glutamyl transferase,
acyltransferase, zymogen; 1.85A {Bacillus subtilis} PDB:
3a75_A*
Length = 376
Score = 30.2 bits (69), Expect = 1.5
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
Query: 270 LSNTLGLLARKGKKA-----DADAYIVERVKTAGGIL 301
L+ T L+ KG A A + + V+ GG +
Sbjct: 199 LAKTFKLIRSKGTDAFYKGKFAKT-LSDTVQDFGGSM 234
>2qmc_A GGT, gamma-glutamyltranspeptidase; NTN-hydrolase, transferase; HET:
GTB; 1.55A {Helicobacter pylori} PDB: 2qm6_A* 3fnm_A*
2nqo_A
Length = 377
Score = 30.3 bits (69), Expect = 1.7
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Query: 270 LSNTLGLLARKGKKA-----DADAYIVERVKTAGGIL 301
L+ TL + G K A+ I + +K GGI+
Sbjct: 214 LAKTLNQIKTLGAKGFYQGQVAEL-IEKDMKKNGGII 249
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein,
targeting factor, ATP-bindi TRC40, ARSA,
nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus
jannaschii} PDB: 3ug6_A*
Length = 349
Score = 29.1 bits (65), Expect = 3.4
Identities = 32/188 (17%), Positives = 64/188 (34%), Gaps = 18/188 (9%)
Query: 90 DRVFFSTAGTVTGVRLDSIPEQARRFFWSKKCEDALRGMCLRSFWETLFSSFSKRWFKGI 149
D V F TA T +R +PE ++ +K + + + L K
Sbjct: 153 DVVIFDTAPTGHTLRFLGMPEVMDKYM-TKLIKLRKQMSGFMKMMKKLLPFGGKDEDIDY 211
Query: 150 RRVMTGFGDGQRWFKGIRRVMTDE---AFPLPPVKNKIVLESATQIAKKIRNKNITSVEV 206
+++ + R +++D AF L + ++ + + + K ++ I V
Sbjct: 212 DKMLEELEKMKERIVRARNILSDPERTAFRLVVIPEEMSILESERAMKALQKYGIPIDAV 271
Query: 207 VQAFIERIEQVNPYLNAMVDTRYTEAL--EEAKAADQKIALEEDISDKPYLGVPFTSKES 264
+ VN + V + A + K + ++E DK VP E+
Sbjct: 272 I---------VNQLIPEDVQCDFCRARRELQLKRLEM---IKEKFGDKVIAYVPLLRTEA 319
Query: 265 TACKGLSN 272
+ L
Sbjct: 320 KGIETLKQ 327
>2i3o_A Gamma-glutamyltransferase related protein; structural genomics,
PSI, protein structure initiative; 2.03A {Thermoplasma
acidophilum} SCOP: d.153.1.6
Length = 516
Score = 29.0 bits (66), Expect = 4.7
Identities = 8/39 (20%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 268 KGLSNTLGLLARKGKKA-----DADAYIVERVKTAGGIL 301
L+ + L++ +G ++ AD I+ ++ G L
Sbjct: 186 PDLAESFRLMSEEGFRSFYDGSLADI-IIAGLEGTGSPL 223
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family,
transferase-D complex; HET: DNA MSE ADI; 1.70A
{Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB:
1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A*
1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A*
2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Length = 352
Score = 28.7 bits (65), Expect = 5.0
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 172 DEAFPLPPVKNKIVLESATQIAKKIRNK 199
DEA+ L A + +I+NK
Sbjct: 105 DEAY-LDISDKVRDYREAYNLGLEIKNK 131
>1vkr_A Mannitol-specific PTS system enzyme iiabc compone;
phosphotransferase, transferase, kinase, sugar
transport; NMR {Escherichia coli} SCOP: c.44.2.1 PDB:
1vrv_A* 2few_B*
Length = 125
Score = 27.5 bits (61), Expect = 5.6
Identities = 16/88 (18%), Positives = 27/88 (30%), Gaps = 23/88 (26%)
Query: 189 ATQIAKKIRNKNITSVEVV-----------------QAFIERIEQVNPYL------NAMV 225
A + KKI++ ++ + V + ER + P N +
Sbjct: 31 AGVLRKKIQDAGLSQISVTNSAINNLPPDVDLVITHRDLTERAMRQVPQAQHISLTNFLD 90
Query: 226 DTRYTEALEEAKAADQKIALEEDISDKP 253
YT E AA + E + D
Sbjct: 91 SGLYTSLTERLVAAQRHTENEVKVKDSL 118
>3ce2_A Putative peptidase; structural genomics, unknown function, P
protein structure initiative; 2.60A {Chlamydophila
abortus}
Length = 618
Score = 28.5 bits (64), Expect = 5.6
Identities = 9/65 (13%), Positives = 21/65 (32%), Gaps = 11/65 (16%)
Query: 202 TSVEVVQAFIERIEQ-----------VNPYLNAMVDTRYTEALEEAKAADQKIALEEDIS 250
+ + A ++ I V P L ++ ++ + L A + LE+
Sbjct: 98 ITNQEGIADLKSITHLHTLFAEETSWVQPALTSLSESLIAQHLSAPCLAPYRFYLEKIFR 157
Query: 251 DKPYL 255
+
Sbjct: 158 LSIHT 162
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A
{Debaryomyces hansenii}
Length = 348
Score = 28.3 bits (63), Expect = 6.8
Identities = 30/181 (16%), Positives = 56/181 (30%), Gaps = 29/181 (16%)
Query: 90 DRVFFSTAGTVTGVRLDSIPEQ----ARRFFWSKKCEDALRGMCLRSFWETLFSSFSKRW 145
+ F TA T +R +P +F + M + +F
Sbjct: 157 KTIIFDTAPTGHTLRFLQLPSTLEKLLSKFKDLSGKLGPMLSMMGGGQQQDIFEKL-NEV 215
Query: 146 FKGIRRVMTGFGDGQRWFKGIRRVMTDEAFPLPPVKNKIVLESATQIAKKIRNKNITSVE 205
K + V F + + V E + L ++ +++ + N+
Sbjct: 216 QKNVSEVNEQFTNPEL--TTFICVCISE---------FLSLYETERMIQELMSYNMD--- 261
Query: 206 VVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALE---EDISDKPYLGVPFTSK 262
V + + VN L A D + E++ QK L+ E D + +P
Sbjct: 262 -VNSIV-----VNQLLFAEGDDHSCKRC-ESRWKMQKKYLDQMGELYEDYHLVKMPLLGC 314
Query: 263 E 263
E
Sbjct: 315 E 315
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane
protein; HET: ADP; 2.11A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 324
Score = 27.9 bits (62), Expect = 7.1
Identities = 38/180 (21%), Positives = 63/180 (35%), Gaps = 22/180 (12%)
Query: 90 DRVFFSTAGTVTGVRLDSIPEQARRFFWSKKCEDALRGMCLRSFWETLFSSFSK-RWFKG 148
D V F TA T +RL S PE W K R + S + + +
Sbjct: 140 DIVIFDTAPTGHTLRLLSFPEIMDS--WVGKMIKIRR--QIGSMAKAFKNILPFMGDEEE 195
Query: 149 IRRVMTGFGDGQRWFKGIRRVMTDE---AFPLPPVKNKIVLESATQIAKKIRNKNITSVE 205
R + ++ R VM+D +F + + ++ + + + K + +I +
Sbjct: 196 EDRALQDMEATKKQINAAREVMSDPERTSFKMVVIPEEMSIYESERAMKALEKYSIHADG 255
Query: 206 VVQAFIERIEQVNPYLNAMVDTRYTEAL--EEAKAADQKIALEEDISDKPYLGVPFTSKE 263
V+ VN L D + A + + Q + E SDK VP KE
Sbjct: 256 VI---------VNQVLPEESDCEFCNARRKLQQERLKQ---IREKFSDKVVAEVPLLKKE 303
>2nlz_A Cephalosporin acylase; structural genomics, protein structure
initiative, PSI, nysgxrc; 2.70A {Bacillus halodurans}
SCOP: d.153.1.6
Length = 547
Score = 28.3 bits (64), Expect = 7.2
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 6/39 (15%)
Query: 268 KGLSNTLGLLARKGKKA-----DADAYIVERVKTAGGIL 301
+G ++TL +A ++ AD I GG L
Sbjct: 202 QGHADTLRSIAESNGESFYRGELADQ-IHAFFDKHGGYL 239
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor;
hydrolase, KH, metallo-beta-lactamase; 3.10A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 636
Score = 28.0 bits (63), Expect = 8.1
Identities = 4/23 (17%), Positives = 10/23 (43%)
Query: 396 MLAAGPIVKHAEDLLPYSKCLIL 418
ML G +++ + L ++
Sbjct: 509 MLTGGNSLEYFKWLCEDPDNSLV 531
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp
family, KH domain, ribonuclease, ME beta-lactamase
superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB:
3af6_A*
Length = 651
Score = 28.1 bits (63), Expect = 8.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 396 MLAAGPIVKHAEDLLPYSKCLIL 418
ML GP V++ + L P K I+
Sbjct: 524 MLVGGPSVEYFKQLAPDPKNSII 546
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit;
metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J
recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10
PDB: 2i7v_A
Length = 459
Score = 28.0 bits (63), Expect = 8.7
Identities = 3/23 (13%), Positives = 9/23 (39%)
Query: 396 MLAAGPIVKHAEDLLPYSKCLIL 418
M+ +G + E + ++
Sbjct: 331 MMQSGLSRELFESWCTDKRNGVI 353
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit;
hydrolase, metallo-beta-lactamase, beta-CAsp, RNA
processing; 2.59A {Methanosarcina mazei}
Length = 640
Score = 28.0 bits (63), Expect = 8.9
Identities = 3/23 (13%), Positives = 12/23 (52%)
Query: 396 MLAAGPIVKHAEDLLPYSKCLIL 418
M+ GP++++ + + ++
Sbjct: 513 MMNGGPVMEYFKAFAEDPRNTLV 535
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease,
hydrolase, metal- nuclease, RNA-binding, rRNA
processing; HET: FLC; 2.05A {Thermus thermophilus} PDB:
2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A*
2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Length = 431
Score = 27.8 bits (63), Expect = 9.9
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 396 MLAAGPIVKHAEDLLPYSKCLIL 418
MLA G I+ H + L + ++
Sbjct: 315 MLAGGRILHHLKHGLSDPRNALV 337
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.417
Gapped
Lambda K H
0.267 0.0611 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,054,694
Number of extensions: 496423
Number of successful extensions: 1326
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1290
Number of HSP's successfully gapped: 50
Length of query: 507
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 409
Effective length of database: 3,965,535
Effective search space: 1621903815
Effective search space used: 1621903815
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.8 bits)